Query 006700
Match_columns 635
No_of_seqs 580 out of 3153
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 13:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 7E-129 2E-133 983.4 56.0 622 1-629 1-627 (630)
2 PF12037 DUF3523: Domain of un 100.0 1.4E-64 3E-69 500.9 28.3 259 60-318 18-276 (276)
3 COG1222 RPT1 ATP-dependent 26S 100.0 5.3E-36 1.2E-40 303.7 25.5 242 348-616 141-394 (406)
4 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-33 2.6E-38 274.2 18.3 237 352-615 115-356 (368)
5 KOG0730 AAA+-type ATPase [Post 100.0 2.8E-33 6.2E-38 302.7 20.9 239 350-616 426-676 (693)
6 KOG0734 AAA+-type ATPase conta 100.0 8.9E-33 1.9E-37 290.2 18.4 243 354-624 300-551 (752)
7 PTZ00454 26S protease regulato 100.0 8.7E-30 1.9E-34 273.9 31.4 247 351-624 138-396 (398)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-31 6.7E-36 282.8 19.2 242 351-618 504-773 (802)
9 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-30 2.6E-35 266.0 19.6 242 351-619 205-474 (491)
10 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-30 7.9E-35 282.4 24.0 241 352-618 222-467 (489)
11 KOG0731 AAA+-type ATPase conta 100.0 9E-30 1.9E-34 283.7 21.7 242 351-618 304-557 (774)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 7.3E-30 1.6E-34 272.3 19.7 214 353-594 185-411 (802)
13 KOG0727 26S proteasome regulat 100.0 2.1E-28 4.5E-33 236.7 23.4 242 348-616 145-398 (408)
14 PRK03992 proteasome-activating 100.0 5.1E-28 1.1E-32 261.3 27.9 244 351-621 124-379 (389)
15 TIGR01241 FtsH_fam ATP-depende 100.0 4.1E-28 9E-33 270.5 23.7 239 351-616 48-297 (495)
16 CHL00176 ftsH cell division pr 100.0 1.8E-27 4E-32 268.8 24.2 239 351-616 176-425 (638)
17 PTZ00361 26 proteosome regulat 100.0 8.8E-27 1.9E-31 252.2 28.0 239 351-616 176-426 (438)
18 KOG0739 AAA+-type ATPase [Post 100.0 8.3E-29 1.8E-33 244.6 11.1 210 351-587 126-343 (439)
19 KOG0728 26S proteasome regulat 100.0 4E-27 8.7E-32 227.6 21.9 237 352-615 141-389 (404)
20 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-27 6.8E-32 275.0 23.2 240 352-618 447-714 (733)
21 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-26 4.1E-31 247.8 26.3 237 351-614 115-363 (364)
22 COG0464 SpoVK ATPases of the A 100.0 6.1E-27 1.3E-31 261.7 22.7 242 350-617 234-486 (494)
23 KOG0737 AAA+-type ATPase [Post 99.9 3.4E-27 7.4E-32 241.2 17.6 210 351-589 85-306 (386)
24 COG0465 HflB ATP-dependent Zn 99.9 1.1E-26 2.3E-31 255.4 18.7 245 352-623 144-399 (596)
25 KOG0729 26S proteasome regulat 99.9 8.3E-27 1.8E-31 227.2 15.6 241 351-618 170-422 (435)
26 KOG0736 Peroxisome assembly fa 99.9 1.6E-26 3.4E-31 252.6 19.0 245 347-618 661-936 (953)
27 KOG0735 AAA+-type ATPase [Post 99.9 3E-26 6.5E-31 248.1 17.8 212 355-594 664-885 (952)
28 KOG0652 26S proteasome regulat 99.9 6.4E-26 1.4E-30 220.4 18.0 239 351-616 164-414 (424)
29 COG0542 clpA ATP-binding subun 99.9 1.5E-25 3.2E-30 252.1 21.4 235 275-588 455-748 (786)
30 KOG0726 26S proteasome regulat 99.9 2.5E-26 5.4E-31 226.4 11.1 242 348-616 175-428 (440)
31 PRK10733 hflB ATP-dependent me 99.9 3.7E-25 7.9E-30 252.7 21.8 238 352-616 146-394 (644)
32 TIGR03689 pup_AAA proteasome A 99.9 1.2E-24 2.7E-29 238.4 24.7 252 351-618 175-482 (512)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.3E-24 2.8E-29 257.3 21.1 207 384-621 1627-1884(2281)
34 PRK10865 protein disaggregatio 99.9 1.1E-22 2.4E-27 238.7 31.7 354 155-588 413-822 (857)
35 PLN00020 ribulose bisphosphate 99.9 2.4E-23 5.1E-28 215.3 22.2 151 382-534 143-314 (413)
36 KOG0740 AAA+-type ATPase [Post 99.9 1.5E-23 3.2E-28 222.1 16.8 239 352-617 147-407 (428)
37 KOG0730 AAA+-type ATPase [Post 99.9 2.2E-22 4.7E-27 218.6 19.7 233 358-623 184-425 (693)
38 TIGR03346 chaperone_ClpB ATP-d 99.9 4.3E-21 9.2E-26 226.2 32.0 354 155-588 408-819 (852)
39 TIGR01243 CDC48 AAA family ATP 99.9 3.2E-22 6.9E-27 233.2 22.2 241 352-620 172-441 (733)
40 KOG0651 26S proteasome regulat 99.9 8E-23 1.7E-27 203.8 10.9 232 355-613 129-372 (388)
41 COG2256 MGS1 ATPase related to 99.9 1.3E-21 2.8E-26 202.4 19.4 215 354-616 20-240 (436)
42 KOG0741 AAA+-type ATPase [Post 99.9 8.3E-23 1.8E-27 215.3 10.0 247 348-616 209-492 (744)
43 TIGR03345 VI_ClpV1 type VI sec 99.9 2E-20 4.4E-25 219.0 29.3 199 358-588 566-824 (852)
44 PF05496 RuvB_N: Holliday junc 99.9 2.2E-21 4.7E-26 189.1 15.3 191 354-590 20-225 (233)
45 COG2204 AtoC Response regulato 99.9 3E-21 6.6E-26 207.5 15.2 308 235-609 48-386 (464)
46 CHL00181 cbbX CbbX; Provisiona 99.9 1.9E-20 4.1E-25 194.0 19.6 172 358-536 23-214 (287)
47 PRK14956 DNA polymerase III su 99.9 4.5E-20 9.8E-25 199.8 22.9 210 352-611 12-243 (484)
48 PRK12323 DNA polymerase III su 99.9 3E-20 6.4E-25 205.5 21.5 208 352-609 10-244 (700)
49 TIGR02881 spore_V_K stage V sp 99.8 3.4E-20 7.3E-25 190.4 19.4 171 357-535 5-195 (261)
50 PRK00080 ruvB Holliday junctio 99.8 1.4E-19 3E-24 192.0 24.2 215 354-614 21-250 (328)
51 PRK14962 DNA polymerase III su 99.8 9.9E-20 2.1E-24 200.1 22.7 207 353-614 9-242 (472)
52 TIGR00635 ruvB Holliday juncti 99.8 1.7E-19 3.7E-24 189.4 23.5 212 356-613 2-228 (305)
53 KOG0989 Replication factor C, 99.8 4.5E-20 9.7E-25 184.6 17.7 193 353-595 31-236 (346)
54 COG2255 RuvB Holliday junction 99.8 1.8E-19 3.9E-24 178.6 21.6 215 354-614 22-251 (332)
55 KOG0732 AAA+-type ATPase conta 99.8 4.4E-20 9.5E-25 211.4 18.9 213 351-590 258-485 (1080)
56 PRK07003 DNA polymerase III su 99.8 1.1E-19 2.3E-24 203.4 21.5 209 352-610 10-240 (830)
57 KOG0744 AAA+-type ATPase [Post 99.8 1E-19 2.2E-24 182.5 17.4 251 356-618 140-418 (423)
58 TIGR00763 lon ATP-dependent pr 99.8 1.4E-18 2.9E-23 203.3 29.6 230 358-612 320-584 (775)
59 PRK14958 DNA polymerase III su 99.8 3.3E-19 7.2E-24 197.9 21.8 207 352-613 10-243 (509)
60 PRK14960 DNA polymerase III su 99.8 5.1E-19 1.1E-23 196.3 22.4 206 352-612 9-241 (702)
61 PRK07994 DNA polymerase III su 99.8 6.1E-19 1.3E-23 198.3 22.9 211 352-612 10-242 (647)
62 TIGR02880 cbbX_cfxQ probable R 99.8 2.9E-19 6.3E-24 185.2 18.4 170 359-535 23-212 (284)
63 PLN03025 replication factor C 99.8 6.9E-19 1.5E-23 185.9 21.2 205 353-611 8-220 (319)
64 PRK14949 DNA polymerase III su 99.8 9.3E-19 2E-23 199.4 23.2 191 352-588 10-222 (944)
65 PRK14964 DNA polymerase III su 99.8 8.5E-19 1.8E-23 192.0 22.0 205 352-611 7-238 (491)
66 PRK14961 DNA polymerase III su 99.8 1.4E-18 3.1E-23 186.5 22.6 211 352-612 10-242 (363)
67 PRK06645 DNA polymerase III su 99.8 1.8E-18 3.9E-23 190.9 23.4 215 352-614 15-256 (507)
68 PRK14951 DNA polymerase III su 99.8 1.6E-18 3.5E-23 194.7 22.8 206 352-612 10-247 (618)
69 PRK14959 DNA polymerase III su 99.8 1.6E-18 3.6E-23 193.3 22.1 208 352-611 10-241 (624)
70 PRK14963 DNA polymerase III su 99.8 2.1E-18 4.6E-23 191.1 22.4 206 352-613 8-239 (504)
71 PRK11034 clpA ATP-dependent Cl 99.8 7.4E-19 1.6E-23 202.3 19.4 203 358-588 458-709 (758)
72 PRK14957 DNA polymerase III su 99.8 2.7E-18 5.9E-23 190.5 22.9 210 352-613 10-243 (546)
73 PRK07764 DNA polymerase III su 99.8 2.3E-18 5.1E-23 199.5 23.1 209 352-611 9-243 (824)
74 PRK08691 DNA polymerase III su 99.8 2E-18 4.3E-23 193.4 21.1 213 352-614 10-244 (709)
75 PRK14952 DNA polymerase III su 99.8 3.8E-18 8.2E-23 191.0 23.0 212 352-612 7-242 (584)
76 PRK04195 replication factor C 99.8 3.4E-18 7.3E-23 190.3 21.8 208 353-611 9-222 (482)
77 CHL00095 clpC Clp protease ATP 99.8 9.8E-18 2.1E-22 197.3 26.4 199 358-588 509-775 (821)
78 PF00004 AAA: ATPase family as 99.8 7.7E-19 1.7E-23 160.2 13.3 127 390-517 1-132 (132)
79 TIGR02639 ClpA ATP-dependent C 99.8 1.7E-18 3.6E-23 201.6 19.3 199 358-588 454-705 (731)
80 PRK14969 DNA polymerase III su 99.8 4.2E-18 9.2E-23 190.2 21.1 211 352-612 10-242 (527)
81 PRK05563 DNA polymerase III su 99.8 7.7E-18 1.7E-22 189.4 22.9 210 352-611 10-241 (559)
82 PRK13342 recombination factor 99.8 8E-18 1.7E-22 183.8 22.2 205 354-615 8-220 (413)
83 PRK05896 DNA polymerase III su 99.8 8.5E-18 1.8E-22 186.7 22.0 205 352-611 10-241 (605)
84 PRK14965 DNA polymerase III su 99.8 8.1E-18 1.7E-22 190.1 21.3 204 352-610 10-240 (576)
85 COG0466 Lon ATP-dependent Lon 99.8 1.1E-16 2.5E-21 175.9 29.1 238 358-616 323-586 (782)
86 KOG0735 AAA+-type ATPase [Post 99.8 1.2E-17 2.6E-22 181.9 21.0 241 358-630 408-664 (952)
87 PRK06305 DNA polymerase III su 99.8 2.9E-17 6.4E-22 180.3 23.3 207 353-611 12-243 (451)
88 COG2812 DnaX DNA polymerase II 99.8 7.1E-18 1.5E-22 184.1 17.8 210 352-611 10-241 (515)
89 PRK14953 DNA polymerase III su 99.8 2.7E-17 5.8E-22 181.7 22.4 210 352-612 10-242 (486)
90 PRK08451 DNA polymerase III su 99.8 3.5E-17 7.6E-22 180.8 22.7 203 353-611 9-239 (535)
91 PRK09111 DNA polymerase III su 99.8 3.1E-17 6.7E-22 184.7 22.7 212 352-613 18-256 (598)
92 PHA02544 44 clamp loader, smal 99.8 4.5E-17 9.8E-22 171.9 22.4 214 352-611 15-228 (316)
93 PRK07133 DNA polymerase III su 99.8 3.1E-17 6.7E-22 185.6 22.1 210 352-611 12-240 (725)
94 PRK14970 DNA polymerase III su 99.8 6.5E-17 1.4E-21 174.3 23.2 211 352-612 11-231 (367)
95 KOG2028 ATPase related to the 99.8 1.5E-17 3.3E-22 169.1 16.6 219 354-614 134-368 (554)
96 PRK12402 replication factor C 99.8 5.1E-17 1.1E-21 172.8 21.7 209 353-613 10-248 (337)
97 PRK10787 DNA-binding ATP-depen 99.8 1.3E-16 2.8E-21 185.2 26.3 231 358-614 322-582 (784)
98 TIGR02397 dnaX_nterm DNA polym 99.8 6.5E-17 1.4E-21 173.4 21.9 210 353-612 9-240 (355)
99 PRK14955 DNA polymerase III su 99.7 7.2E-17 1.6E-21 175.3 21.3 210 353-611 11-254 (397)
100 PRK06647 DNA polymerase III su 99.7 1.1E-16 2.3E-21 179.6 22.7 210 352-611 10-241 (563)
101 TIGR02639 ClpA ATP-dependent C 99.7 7.5E-17 1.6E-21 187.8 21.4 225 355-615 179-430 (731)
102 PRK14954 DNA polymerase III su 99.7 1.8E-16 3.8E-21 178.8 23.3 211 352-611 10-254 (620)
103 PTZ00112 origin recognition co 99.7 1.8E-16 3.8E-21 178.1 22.7 221 357-615 754-1007(1164)
104 KOG2004 Mitochondrial ATP-depe 99.7 4.8E-16 1.1E-20 169.9 25.5 171 358-534 411-599 (906)
105 PRK13341 recombination factor 99.7 9.3E-17 2E-21 184.2 21.1 213 354-614 24-247 (725)
106 PRK06893 DNA replication initi 99.7 2.7E-16 5.8E-21 158.3 21.0 211 351-612 9-228 (229)
107 TIGR02902 spore_lonB ATP-depen 99.7 1.4E-16 3.1E-21 178.5 20.9 212 353-613 60-331 (531)
108 PRK00440 rfc replication facto 99.7 2.3E-16 5.1E-21 166.3 20.8 205 354-615 13-227 (319)
109 KOG0736 Peroxisome assembly fa 99.7 1.5E-16 3.3E-21 174.9 19.3 208 387-622 431-661 (953)
110 PRK14948 DNA polymerase III su 99.7 3.9E-16 8.4E-21 176.9 22.9 207 353-610 11-241 (620)
111 PRK14950 DNA polymerase III su 99.7 3.5E-16 7.6E-21 177.6 22.5 210 353-612 11-243 (585)
112 PRK07940 DNA polymerase III su 99.7 1.7E-16 3.7E-21 170.8 18.9 160 356-528 3-186 (394)
113 KOG0742 AAA+-type ATPase [Post 99.7 2.9E-15 6.2E-20 154.5 26.6 213 12-234 5-228 (630)
114 PRK08084 DNA replication initi 99.7 7.7E-16 1.7E-20 155.5 21.1 209 351-612 15-234 (235)
115 KOG0743 AAA+-type ATPase [Post 99.7 1.7E-16 3.8E-21 167.3 16.7 172 354-533 197-385 (457)
116 KOG1051 Chaperone HSP104 and r 99.7 8.4E-17 1.8E-21 183.9 15.1 293 194-581 458-816 (898)
117 PRK05342 clpX ATP-dependent pr 99.7 4.4E-16 9.5E-21 168.4 19.2 234 359-608 72-399 (412)
118 COG3829 RocR Transcriptional r 99.7 8.7E-17 1.9E-21 172.9 13.5 221 351-608 238-491 (560)
119 TIGR00382 clpX endopeptidase C 99.7 3.5E-16 7.6E-21 168.2 17.9 227 358-596 77-387 (413)
120 PRK14971 DNA polymerase III su 99.7 1.1E-15 2.3E-20 173.4 22.7 204 353-611 12-243 (614)
121 PRK00149 dnaA chromosomal repl 99.7 6E-16 1.3E-20 171.0 19.7 225 350-616 114-351 (450)
122 KOG0991 Replication factor C, 99.7 2.8E-16 6.1E-21 151.4 14.5 190 355-596 24-221 (333)
123 TIGR00362 DnaA chromosomal rep 99.7 1E-15 2.2E-20 167.2 20.6 225 350-616 102-339 (405)
124 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.2E-15 2.5E-20 153.1 19.5 205 353-611 10-225 (226)
125 PRK08903 DnaA regulatory inact 99.7 1.7E-15 3.8E-20 152.2 20.6 203 352-612 12-224 (227)
126 TIGR02928 orc1/cdc6 family rep 99.7 3.4E-15 7.3E-20 160.7 23.7 224 352-615 9-275 (365)
127 PRK11034 clpA ATP-dependent Cl 99.7 1.3E-15 2.9E-20 175.6 21.1 225 356-616 184-435 (758)
128 TIGR03345 VI_ClpV1 type VI sec 99.7 3.1E-15 6.6E-20 175.7 23.5 190 355-580 184-391 (852)
129 PRK00411 cdc6 cell division co 99.7 5.8E-15 1.3E-19 160.6 24.2 227 354-616 26-284 (394)
130 PRK06620 hypothetical protein; 99.7 3.6E-15 7.8E-20 148.2 20.5 200 351-611 9-213 (214)
131 PRK12422 chromosomal replicati 99.7 2.4E-15 5.2E-20 164.7 20.5 227 350-616 103-345 (445)
132 PRK14086 dnaA chromosomal repl 99.7 3.8E-15 8.1E-20 165.8 20.8 225 351-616 281-517 (617)
133 TIGR02974 phageshock_pspF psp 99.7 1.7E-15 3.8E-20 160.1 17.0 210 360-606 1-242 (329)
134 TIGR00390 hslU ATP-dependent p 99.6 4.7E-15 1E-19 157.4 18.5 243 358-616 12-432 (441)
135 PRK08727 hypothetical protein; 99.6 1.2E-14 2.7E-19 146.5 20.8 206 352-613 13-230 (233)
136 PRK05201 hslU ATP-dependent pr 99.6 4.4E-15 9.5E-20 157.7 17.8 243 358-616 15-434 (443)
137 PRK14088 dnaA chromosomal repl 99.6 6.4E-15 1.4E-19 161.7 19.5 225 350-616 97-334 (440)
138 COG3604 FhlA Transcriptional r 99.6 1.1E-15 2.5E-20 162.2 12.4 222 348-607 213-465 (550)
139 PRK10865 protein disaggregatio 99.6 3.7E-15 8.1E-20 175.4 17.4 167 355-536 175-359 (857)
140 PRK05642 DNA replication initi 99.6 2.8E-14 6.1E-19 144.0 20.9 213 351-612 12-233 (234)
141 PRK14087 dnaA chromosomal repl 99.6 2.2E-14 4.7E-19 157.7 21.1 226 354-615 111-349 (450)
142 PRK11608 pspF phage shock prot 99.6 1.1E-14 2.5E-19 154.0 16.7 210 356-606 4-249 (326)
143 TIGR02640 gas_vesic_GvpN gas v 99.6 5.8E-14 1.3E-18 144.2 21.5 203 362-616 3-259 (262)
144 TIGR01817 nifA Nif-specific re 99.6 4.7E-15 1E-19 167.4 14.6 220 353-609 191-440 (534)
145 TIGR03346 chaperone_ClpB ATP-d 99.6 1.4E-14 2.9E-19 171.3 18.4 167 355-536 170-354 (852)
146 PF00308 Bac_DnaA: Bacterial d 99.6 3.4E-14 7.3E-19 141.9 18.0 201 352-593 2-215 (219)
147 PRK10820 DNA-binding transcrip 99.6 1.6E-14 3.6E-19 161.9 17.5 215 352-607 198-447 (520)
148 PRK09112 DNA polymerase III su 99.6 5.3E-14 1.1E-18 149.6 20.4 157 353-529 18-211 (351)
149 COG1224 TIP49 DNA helicase TIP 99.6 1.7E-13 3.7E-18 139.9 22.7 132 447-617 292-435 (450)
150 PRK13407 bchI magnesium chelat 99.6 6.5E-14 1.4E-18 147.4 20.6 244 354-615 4-307 (334)
151 PF05673 DUF815: Protein of un 99.6 9.4E-14 2E-18 137.6 19.0 196 354-590 23-245 (249)
152 CHL00095 clpC Clp protease ATP 99.6 2.5E-14 5.3E-19 168.7 16.7 187 356-579 177-381 (821)
153 PRK07471 DNA polymerase III su 99.6 9.2E-14 2E-18 148.5 19.4 159 353-531 14-213 (365)
154 PRK05564 DNA polymerase III su 99.6 1.2E-13 2.6E-18 145.7 20.0 153 356-531 2-165 (313)
155 CHL00081 chlI Mg-protoporyphyr 99.6 3.1E-13 6.7E-18 142.6 22.8 248 351-618 10-326 (350)
156 TIGR02903 spore_lon_C ATP-depe 99.6 1.2E-13 2.7E-18 157.2 20.5 216 354-614 150-430 (615)
157 PRK07399 DNA polymerase III su 99.6 1.3E-13 2.8E-18 144.6 19.0 155 356-531 2-195 (314)
158 COG1474 CDC6 Cdc6-related prot 99.6 1.8E-13 4E-18 146.0 20.3 222 358-616 17-267 (366)
159 PRK05022 anaerobic nitric oxid 99.6 4.7E-14 1E-18 158.1 16.3 211 356-607 185-436 (509)
160 TIGR02329 propionate_PrpR prop 99.6 4.7E-14 1E-18 157.2 15.5 220 352-611 206-467 (526)
161 PRK09087 hypothetical protein; 99.6 2.4E-13 5.3E-18 136.2 19.2 203 351-614 14-222 (226)
162 PRK15429 formate hydrogenlyase 99.5 1.4E-13 3E-18 159.9 18.7 210 354-604 372-616 (686)
163 COG1221 PspF Transcriptional r 99.5 2.8E-14 6E-19 151.5 11.0 209 353-598 73-310 (403)
164 PRK15424 propionate catabolism 99.5 1.2E-13 2.6E-18 153.8 16.2 215 354-608 215-479 (538)
165 TIGR02030 BchI-ChlI magnesium 99.5 6.9E-13 1.5E-17 139.9 21.0 242 356-616 2-311 (337)
166 PRK11388 DNA-binding transcrip 99.5 1.6E-13 3.5E-18 158.3 17.3 216 354-611 321-568 (638)
167 TIGR00678 holB DNA polymerase 99.5 3.6E-13 7.8E-18 131.4 16.7 145 385-577 12-183 (188)
168 KOG2035 Replication factor C, 99.5 1.1E-12 2.3E-17 129.9 19.8 208 354-614 9-258 (351)
169 TIGR02915 PEP_resp_reg putativ 99.5 7.8E-14 1.7E-18 154.2 13.3 215 356-607 137-382 (445)
170 COG0593 DnaA ATPase involved i 99.5 9.6E-13 2.1E-17 140.3 20.7 228 350-619 79-318 (408)
171 TIGR02442 Cob-chelat-sub cobal 99.5 1.1E-12 2.4E-17 150.3 22.7 241 356-619 2-309 (633)
172 PRK04132 replication factor C 99.5 5.9E-13 1.3E-17 153.9 19.2 173 389-610 566-750 (846)
173 PRK05707 DNA polymerase III su 99.5 8.9E-13 1.9E-17 139.1 18.3 134 384-530 19-177 (328)
174 COG0470 HolB ATPase involved i 99.5 6.7E-13 1.5E-17 140.2 17.2 147 359-524 2-174 (325)
175 PF06068 TIP49: TIP49 C-termin 99.5 8E-13 1.7E-17 137.3 16.1 102 447-587 279-392 (398)
176 PRK08058 DNA polymerase III su 99.5 1.5E-12 3.2E-17 138.1 18.0 153 356-528 3-179 (329)
177 TIGR03015 pepcterm_ATPase puta 99.5 1.4E-11 3.1E-16 126.7 24.6 195 389-614 45-266 (269)
178 PRK13531 regulatory ATPase Rav 99.5 4.2E-12 9.1E-17 137.7 20.3 237 358-616 20-285 (498)
179 PRK10923 glnG nitrogen regulat 99.4 4.9E-13 1.1E-17 148.9 13.2 219 356-611 136-385 (469)
180 KOG1969 DNA replication checkp 99.4 3.1E-12 6.8E-17 140.9 19.0 204 353-597 266-518 (877)
181 TIGR01650 PD_CobS cobaltochela 99.4 1.4E-12 3.1E-17 135.5 14.2 133 388-531 65-233 (327)
182 PHA02244 ATPase-like protein 99.4 4.7E-12 1E-16 133.0 18.0 122 389-522 121-265 (383)
183 cd00009 AAA The AAA+ (ATPases 99.4 3.8E-12 8.2E-17 116.9 15.3 122 387-517 19-151 (151)
184 TIGR00602 rad24 checkpoint pro 99.4 6.2E-12 1.3E-16 142.1 19.7 209 352-596 78-330 (637)
185 KOG1942 DNA helicase, TBP-inte 99.4 2.7E-11 5.8E-16 120.7 21.2 131 447-616 297-440 (456)
186 PF07724 AAA_2: AAA domain (Cd 99.4 2.6E-13 5.7E-18 130.0 6.3 112 386-499 2-131 (171)
187 COG3283 TyrR Transcriptional r 99.4 1.8E-12 3.8E-17 132.3 12.6 213 352-605 198-440 (511)
188 PF05621 TniB: Bacterial TniB 99.4 3E-11 6.4E-16 123.5 21.2 222 358-609 34-284 (302)
189 COG0714 MoxR-like ATPases [Gen 99.4 1.1E-11 2.3E-16 131.8 17.8 239 358-616 24-298 (329)
190 PF13177 DNA_pol3_delta2: DNA 99.4 3.4E-12 7.3E-17 121.5 12.2 138 362-519 1-162 (162)
191 smart00350 MCM minichromosome 99.4 1.6E-11 3.4E-16 137.6 19.6 248 358-615 203-505 (509)
192 KOG2680 DNA helicase TIP49, TB 99.4 3.7E-11 8.1E-16 120.1 19.8 134 446-618 288-433 (454)
193 TIGR02031 BchD-ChlD magnesium 99.4 2.2E-11 4.8E-16 138.2 20.3 221 387-618 16-262 (589)
194 PRK11361 acetoacetate metaboli 99.4 4E-12 8.7E-17 141.1 14.1 219 356-611 141-390 (457)
195 PRK15115 response regulator Gl 99.4 6.3E-12 1.4E-16 139.0 15.4 216 359-611 135-381 (444)
196 PRK07993 DNA polymerase III su 99.4 1.8E-11 4E-16 129.5 18.1 133 384-529 21-178 (334)
197 PRK06871 DNA polymerase III su 99.3 4.2E-11 9E-16 125.7 19.2 133 385-530 22-178 (325)
198 KOG0990 Replication factor C, 99.3 9.9E-12 2.1E-16 125.8 13.6 192 353-596 36-239 (360)
199 TIGR01818 ntrC nitrogen regula 99.3 1.2E-11 2.5E-16 137.6 15.7 219 357-611 133-381 (463)
200 PRK08769 DNA polymerase III su 99.3 3.1E-11 6.7E-16 126.4 17.1 132 385-529 24-183 (319)
201 COG1219 ClpX ATP-dependent pro 99.3 2.2E-11 4.7E-16 122.9 15.2 225 358-594 61-367 (408)
202 COG2607 Predicted ATPase (AAA+ 99.3 1.1E-10 2.3E-15 114.0 19.3 164 353-536 55-244 (287)
203 TIGR00764 lon_rel lon-related 99.3 1.2E-10 2.6E-15 132.4 22.5 141 447-616 218-393 (608)
204 PF12037 DUF3523: Domain of un 99.3 6.4E-10 1.4E-14 111.6 24.3 153 62-224 15-171 (276)
205 PRK06964 DNA polymerase III su 99.3 2.3E-11 5E-16 128.5 14.2 133 384-529 18-202 (342)
206 PF01078 Mg_chelatase: Magnesi 99.3 1.6E-12 3.4E-17 126.4 4.8 144 356-521 1-205 (206)
207 TIGR00368 Mg chelatase-related 99.3 7.3E-11 1.6E-15 130.8 18.4 228 355-613 189-498 (499)
208 PRK06090 DNA polymerase III su 99.3 7E-11 1.5E-15 123.7 16.1 133 384-529 22-178 (319)
209 PF00158 Sigma54_activat: Sigm 99.3 1.5E-11 3.1E-16 117.6 9.9 131 360-509 1-162 (168)
210 COG0606 Predicted ATPase with 99.3 2.8E-11 6.1E-16 129.2 12.8 234 354-614 175-485 (490)
211 KOG0745 Putative ATP-dependent 99.3 6.2E-11 1.3E-15 123.9 14.6 190 389-594 228-508 (564)
212 KOG1514 Origin recognition com 99.3 1.5E-10 3.3E-15 127.7 17.5 223 358-619 396-660 (767)
213 PF07728 AAA_5: AAA domain (dy 99.3 3.2E-12 7E-17 118.2 3.8 111 389-509 1-139 (139)
214 COG1220 HslU ATP-dependent pro 99.2 3.3E-10 7.2E-15 115.3 17.0 152 448-615 252-434 (444)
215 PRK10365 transcriptional regul 99.2 6.1E-11 1.3E-15 131.0 12.9 216 359-611 140-386 (441)
216 COG0542 clpA ATP-binding subun 99.2 1.6E-10 3.5E-15 131.4 15.0 166 356-536 168-351 (786)
217 PRK09862 putative ATP-dependen 99.2 4.2E-10 9.1E-15 124.3 17.9 232 355-614 188-492 (506)
218 COG0464 SpoVK ATPases of the A 99.2 6.5E-10 1.4E-14 124.7 19.3 205 384-617 15-229 (494)
219 COG1239 ChlI Mg-chelatase subu 99.2 1.9E-09 4.2E-14 113.8 19.6 247 354-621 13-329 (423)
220 PTZ00111 DNA replication licen 99.2 2.4E-09 5.1E-14 123.7 21.8 218 388-616 493-806 (915)
221 PRK11331 5-methylcytosine-spec 99.1 3.6E-10 7.8E-15 121.9 13.7 139 357-517 174-357 (459)
222 smart00382 AAA ATPases associa 99.1 4.3E-10 9.3E-15 102.1 11.7 122 388-518 3-147 (148)
223 PF07726 AAA_3: ATPase family 99.1 1.5E-11 3.3E-16 110.1 0.8 112 389-509 1-129 (131)
224 PRK05818 DNA polymerase III su 99.1 3.6E-09 7.7E-14 106.7 17.2 120 386-518 6-147 (261)
225 PRK08116 hypothetical protein; 99.1 6.1E-10 1.3E-14 114.6 11.8 163 354-530 81-259 (268)
226 PRK08699 DNA polymerase III su 99.1 1E-09 2.3E-14 115.7 13.2 132 385-529 19-183 (325)
227 KOG0741 AAA+-type ATPase [Post 99.1 2.4E-09 5.3E-14 114.4 15.4 154 373-529 526-684 (744)
228 KOG2227 Pre-initiation complex 99.1 3.3E-09 7.1E-14 112.6 16.2 199 358-594 150-376 (529)
229 PRK05917 DNA polymerase III su 99.1 2.9E-09 6.4E-14 109.5 15.5 123 384-519 16-155 (290)
230 PRK13765 ATP-dependent proteas 99.0 3E-09 6.5E-14 120.8 15.8 137 447-612 227-398 (637)
231 PF14532 Sigma54_activ_2: Sigm 99.0 7.1E-10 1.5E-14 102.6 8.2 126 361-517 1-137 (138)
232 PF03215 Rad17: Rad17 cell cyc 99.0 1.2E-08 2.5E-13 113.8 19.0 210 353-595 14-269 (519)
233 COG3284 AcoR Transcriptional a 99.0 1.4E-09 3E-14 119.8 11.2 205 362-607 317-550 (606)
234 PRK12377 putative replication 99.0 2.6E-09 5.6E-14 108.3 11.0 120 388-519 102-236 (248)
235 PRK07276 DNA polymerase III su 99.0 1.4E-08 3E-13 104.9 15.4 129 384-528 21-172 (290)
236 PRK13406 bchD magnesium chelat 98.9 9.1E-09 2E-13 116.1 14.9 202 386-620 24-256 (584)
237 PRK06835 DNA replication prote 98.9 7.3E-08 1.6E-12 101.8 20.5 120 388-519 184-318 (329)
238 PRK07132 DNA polymerase III su 98.9 4.1E-08 8.9E-13 102.2 18.2 127 384-529 15-160 (299)
239 PF01637 Arch_ATPase: Archaeal 98.9 1E-08 2.2E-13 102.3 12.3 167 387-584 20-232 (234)
240 PRK08181 transposase; Validate 98.9 6.3E-09 1.4E-13 106.7 9.2 121 388-521 107-245 (269)
241 PRK07952 DNA replication prote 98.9 1.3E-08 2.8E-13 102.9 11.2 151 354-519 68-235 (244)
242 COG3267 ExeA Type II secretory 98.9 2E-07 4.3E-12 92.6 19.0 188 389-608 53-267 (269)
243 PF12775 AAA_7: P-loop contain 98.8 4E-08 8.7E-13 101.3 14.3 168 353-535 5-197 (272)
244 KOG0478 DNA replication licens 98.8 1.1E-07 2.3E-12 105.0 17.8 217 389-617 464-727 (804)
245 COG1241 MCM2 Predicted ATPase 98.8 3.6E-08 7.8E-13 111.5 14.4 246 357-616 285-594 (682)
246 smart00763 AAA_PrkA PrkA AAA d 98.8 5.5E-08 1.2E-12 102.5 14.6 63 356-420 48-118 (361)
247 KOG1970 Checkpoint RAD17-RFC c 98.8 3.7E-07 8.1E-12 98.8 20.3 209 354-594 78-320 (634)
248 PF13173 AAA_14: AAA domain 98.8 2.9E-08 6.2E-13 90.6 9.6 118 389-523 4-127 (128)
249 PRK08939 primosomal protein Dn 98.7 5.1E-08 1.1E-12 102.1 10.1 100 386-498 155-261 (306)
250 PRK06526 transposase; Provisio 98.7 2.7E-08 5.8E-13 101.5 7.4 98 388-498 99-201 (254)
251 KOG0480 DNA replication licens 98.7 5.3E-07 1.2E-11 98.9 16.6 248 356-616 343-645 (764)
252 PF00493 MCM: MCM2/3/5 family 98.7 5.2E-09 1.1E-13 111.1 1.2 243 358-615 24-327 (331)
253 KOG2170 ATPase of the AAA+ sup 98.7 6.4E-07 1.4E-11 90.7 15.8 131 358-499 82-226 (344)
254 PF01695 IstB_IS21: IstB-like 98.6 6.5E-09 1.4E-13 100.4 0.8 110 387-509 47-171 (178)
255 PF12774 AAA_6: Hydrolytic ATP 98.6 5E-07 1.1E-11 90.7 14.2 145 358-526 10-175 (231)
256 COG1484 DnaC DNA replication p 98.6 1.2E-07 2.6E-12 96.9 9.7 100 387-498 105-209 (254)
257 COG5271 MDN1 AAA ATPase contai 98.6 7.1E-07 1.5E-11 105.2 16.7 157 357-531 864-1047(4600)
258 PRK06921 hypothetical protein; 98.6 2.7E-07 5.9E-12 94.9 11.9 114 387-508 117-239 (266)
259 COG4650 RtcR Sigma54-dependent 98.6 5.1E-07 1.1E-11 90.6 11.5 195 390-614 211-443 (531)
260 PRK06581 DNA polymerase III su 98.6 1.5E-06 3.2E-11 86.2 14.4 136 386-534 14-164 (263)
261 PF05729 NACHT: NACHT domain 98.5 6.2E-07 1.3E-11 84.6 10.6 140 389-533 2-165 (166)
262 PF13401 AAA_22: AAA domain; P 98.5 2.6E-07 5.7E-12 84.0 7.7 96 388-497 5-125 (131)
263 PRK09183 transposase/IS protei 98.5 2.9E-07 6.3E-12 94.4 8.0 99 388-498 103-206 (259)
264 KOG1968 Replication factor C, 98.5 3.2E-07 7E-12 106.9 9.2 164 390-593 360-535 (871)
265 KOG0482 DNA replication licens 98.4 1E-06 2.3E-11 94.2 9.9 245 358-615 342-639 (721)
266 COG5271 MDN1 AAA ATPase contai 98.4 7.3E-07 1.6E-11 105.1 9.0 135 388-532 1544-1704(4600)
267 cd01120 RecA-like_NTPases RecA 98.4 3E-06 6.6E-11 79.4 11.7 107 390-498 2-137 (165)
268 PF00931 NB-ARC: NB-ARC domain 98.4 3.9E-06 8.4E-11 87.1 13.4 132 385-534 17-173 (287)
269 TIGR02688 conserved hypothetic 98.3 8.5E-06 1.8E-10 87.4 13.9 194 388-617 210-436 (449)
270 PF03969 AFG1_ATPase: AFG1-lik 98.3 2.4E-06 5.1E-11 91.5 9.7 31 383-413 58-88 (362)
271 COG1618 Predicted nucleotide k 98.3 1.1E-05 2.4E-10 74.9 11.7 24 388-411 6-29 (179)
272 PHA00729 NTP-binding motif con 98.2 2E-06 4.3E-11 85.4 6.7 27 388-414 18-44 (226)
273 KOG0481 DNA replication licens 98.2 1.7E-05 3.7E-10 85.2 12.0 251 358-619 331-644 (729)
274 KOG0477 DNA replication licens 98.1 2.2E-05 4.7E-10 86.2 11.5 145 389-535 484-654 (854)
275 PF00910 RNA_helicase: RNA hel 98.1 1.1E-05 2.4E-10 71.1 7.7 23 390-412 1-23 (107)
276 PLN03210 Resistant to P. syrin 98.1 8.7E-05 1.9E-09 91.7 17.5 155 354-532 180-365 (1153)
277 PF12780 AAA_8: P-loop contain 98.1 0.00023 5E-09 73.2 17.8 167 358-535 8-214 (268)
278 PF07693 KAP_NTPase: KAP famil 98.0 0.0004 8.6E-09 73.5 19.8 83 444-536 170-268 (325)
279 PF13191 AAA_16: AAA ATPase do 98.0 4.5E-06 9.8E-11 80.4 4.4 47 360-411 2-48 (185)
280 COG1485 Predicted ATPase [Gene 98.0 1.4E-05 3E-10 83.1 7.6 29 384-412 62-90 (367)
281 PHA02774 E1; Provisional 98.0 3.9E-05 8.4E-10 85.2 11.1 108 387-518 434-555 (613)
282 PRK04841 transcriptional regul 98.0 0.00018 4E-09 86.8 18.0 172 358-580 14-220 (903)
283 PF06309 Torsin: Torsin; Inte 98.0 4.8E-05 1E-09 68.4 9.6 53 358-411 25-77 (127)
284 KOG2543 Origin recognition com 98.0 0.00014 3E-09 76.2 14.2 133 386-529 29-191 (438)
285 PRK08118 topology modulation p 97.9 3.6E-05 7.7E-10 73.7 8.9 103 389-535 3-105 (167)
286 PF05707 Zot: Zonular occluden 97.9 1.3E-05 2.7E-10 78.6 5.9 123 390-518 3-146 (193)
287 TIGR01618 phage_P_loop phage n 97.9 4.6E-05 1E-09 75.8 9.3 71 388-460 13-95 (220)
288 PHA02624 large T antigen; Prov 97.9 3E-05 6.6E-10 86.4 8.2 118 387-517 431-561 (647)
289 cd01124 KaiC KaiC is a circadi 97.9 7.7E-05 1.7E-09 72.1 10.2 30 390-419 2-34 (187)
290 PF14516 AAA_35: AAA-like doma 97.9 0.00076 1.6E-08 71.8 18.2 167 388-590 32-243 (331)
291 PRK12723 flagellar biosynthesi 97.8 0.0001 2.2E-09 79.6 11.0 127 387-525 174-329 (388)
292 KOG0479 DNA replication licens 97.8 0.00073 1.6E-08 74.1 17.1 245 358-613 301-641 (818)
293 COG1373 Predicted ATPase (AAA+ 97.8 0.00014 3.1E-09 79.1 12.0 121 389-526 39-162 (398)
294 KOG2228 Origin recognition com 97.8 0.00029 6.4E-09 72.7 13.2 162 358-531 24-219 (408)
295 KOG3928 Mitochondrial ribosome 97.8 0.00073 1.6E-08 71.5 16.5 120 446-588 315-458 (461)
296 KOG1051 Chaperone HSP104 and r 97.8 0.0002 4.4E-09 83.5 13.6 162 357-534 185-366 (898)
297 PF13604 AAA_30: AAA domain; P 97.8 2.6E-05 5.6E-10 76.7 5.2 96 389-496 20-131 (196)
298 PF13207 AAA_17: AAA domain; P 97.7 2.2E-05 4.7E-10 70.4 3.4 29 390-418 2-30 (121)
299 COG5245 DYN1 Dynein, heavy cha 97.7 0.00044 9.5E-09 82.3 14.4 199 388-597 1495-1719(3164)
300 PF10236 DAP3: Mitochondrial r 97.7 0.0018 3.9E-08 68.2 18.1 129 434-585 142-308 (309)
301 PRK07261 topology modulation p 97.7 0.00016 3.4E-09 69.5 9.3 103 389-534 2-104 (171)
302 PRK15455 PrkA family serine pr 97.7 6.3E-05 1.4E-09 83.5 6.8 64 355-420 73-137 (644)
303 PRK05800 cobU adenosylcobinami 97.7 0.00036 7.9E-09 66.9 11.0 105 389-497 3-125 (170)
304 KOG1808 AAA ATPase containing 97.6 8.9E-05 1.9E-09 91.5 7.5 152 359-529 418-597 (1856)
305 PRK04296 thymidine kinase; Pro 97.6 0.00035 7.6E-09 68.3 10.3 70 389-458 4-90 (190)
306 PRK14700 recombination factor 97.6 0.00085 1.8E-08 69.1 12.7 106 486-615 6-116 (300)
307 PF03266 NTPase_1: NTPase; In 97.6 5.6E-05 1.2E-09 72.3 3.9 23 389-411 1-23 (168)
308 KOG2383 Predicted ATPase [Gene 97.6 0.00033 7.1E-09 73.9 9.7 28 384-411 111-138 (467)
309 COG4088 Predicted nucleotide k 97.6 0.00055 1.2E-08 66.2 10.4 24 389-412 3-26 (261)
310 PF05272 VirE: Virulence-assoc 97.6 0.00067 1.5E-08 66.6 11.2 103 388-517 53-169 (198)
311 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00054 1.2E-08 64.7 10.0 116 389-516 4-153 (159)
312 cd00544 CobU Adenosylcobinamid 97.6 0.0005 1.1E-08 65.8 10.0 103 390-497 2-125 (169)
313 PTZ00202 tuzin; Provisional 97.5 0.0039 8.5E-08 67.3 17.4 61 355-420 259-319 (550)
314 PRK14722 flhF flagellar biosyn 97.5 0.00022 4.7E-09 76.5 8.1 25 387-411 137-161 (374)
315 KOG3347 Predicted nucleotide k 97.5 7.1E-05 1.5E-09 68.5 3.6 31 388-418 8-38 (176)
316 PRK00131 aroK shikimate kinase 97.5 8.8E-05 1.9E-09 70.7 4.5 33 386-418 3-35 (175)
317 PRK13695 putative NTPase; Prov 97.5 0.0011 2.3E-08 63.7 11.9 23 389-411 2-24 (174)
318 PRK08233 hypothetical protein; 97.5 0.00043 9.4E-09 66.5 9.2 24 389-412 5-28 (182)
319 PRK13949 shikimate kinase; Pro 97.5 0.00037 8E-09 66.8 8.2 32 388-419 2-33 (169)
320 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00072 1.6E-08 67.3 10.3 108 388-502 30-158 (213)
321 cd01128 rho_factor Transcripti 97.5 0.0012 2.6E-08 67.2 11.9 26 388-413 17-42 (249)
322 PF00448 SRP54: SRP54-type pro 97.5 0.00057 1.2E-08 67.1 9.3 102 387-498 1-126 (196)
323 PF13479 AAA_24: AAA domain 97.5 0.00053 1.2E-08 68.2 9.2 66 389-458 5-80 (213)
324 COG0563 Adk Adenylate kinase a 97.4 0.00021 4.6E-09 69.0 5.8 27 389-415 2-28 (178)
325 cd01121 Sms Sms (bacterial rad 97.4 0.00073 1.6E-08 72.8 10.5 105 388-495 83-207 (372)
326 PRK08485 DNA polymerase III su 97.4 0.0022 4.8E-08 62.2 12.5 69 449-529 57-137 (206)
327 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00074 1.6E-08 63.6 9.3 102 387-499 25-141 (157)
328 PF05970 PIF1: PIF1-like helic 97.4 0.00053 1.1E-08 74.0 9.2 117 363-496 3-149 (364)
329 PRK04040 adenylate kinase; Pro 97.4 0.0014 3E-08 63.9 11.2 29 387-415 2-32 (188)
330 PRK10536 hypothetical protein; 97.4 0.0015 3.2E-08 66.2 11.6 22 389-410 76-97 (262)
331 COG4619 ABC-type uncharacteriz 97.4 0.0016 3.5E-08 61.2 10.8 24 388-411 30-53 (223)
332 PF04665 Pox_A32: Poxvirus A32 97.4 0.0018 3.9E-08 65.3 12.0 129 389-530 15-169 (241)
333 PRK14531 adenylate kinase; Pro 97.4 0.00094 2E-08 64.8 9.8 29 389-417 4-32 (183)
334 TIGR02237 recomb_radB DNA repa 97.4 0.001 2.3E-08 65.7 10.4 35 388-422 13-50 (209)
335 cd00046 DEXDc DEAD-like helica 97.4 0.00091 2E-08 60.1 8.8 23 389-411 2-24 (144)
336 PRK13947 shikimate kinase; Pro 97.3 0.00019 4.1E-09 68.5 4.4 31 389-419 3-33 (171)
337 PRK14974 cell division protein 97.3 0.0022 4.9E-08 68.0 12.8 34 387-420 140-176 (336)
338 PRK11889 flhF flagellar biosyn 97.3 0.0014 3E-08 70.3 11.1 34 387-420 241-277 (436)
339 PRK00625 shikimate kinase; Pro 97.3 0.00019 4.1E-09 69.1 4.1 31 389-419 2-32 (173)
340 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00062 1.3E-08 69.4 8.1 31 390-420 2-35 (249)
341 PF00519 PPV_E1_C: Papillomavi 97.3 0.0011 2.4E-08 70.1 10.0 107 385-518 260-383 (432)
342 PRK05986 cob(I)alamin adenolsy 97.3 0.0018 3.8E-08 62.8 10.6 118 388-517 23-174 (191)
343 PRK07452 DNA polymerase III su 97.3 0.0073 1.6E-07 64.1 16.5 178 389-613 3-198 (326)
344 COG2909 MalT ATP-dependent tra 97.3 0.0048 1E-07 71.0 15.6 118 358-497 19-169 (894)
345 PRK05703 flhF flagellar biosyn 97.3 0.0013 2.7E-08 72.3 10.8 101 387-498 221-343 (424)
346 COG3854 SpoIIIAA ncharacterize 97.3 0.00095 2.1E-08 65.6 8.6 25 388-412 138-162 (308)
347 PRK14528 adenylate kinase; Pro 97.3 0.0017 3.7E-08 63.2 10.5 31 388-418 2-32 (186)
348 cd03283 ABC_MutS-like MutS-lik 97.3 0.0015 3.2E-08 64.4 10.1 23 388-410 26-48 (199)
349 cd03216 ABC_Carb_Monos_I This 97.3 0.0018 3.9E-08 61.5 10.4 102 386-498 25-142 (163)
350 CHL00195 ycf46 Ycf46; Provisio 97.3 0.019 4.2E-07 64.1 19.9 140 436-616 69-210 (489)
351 KOG0923 mRNA splicing factor A 97.3 0.032 6.9E-07 62.4 20.9 43 444-496 376-418 (902)
352 PRK08533 flagellar accessory p 97.3 0.0026 5.6E-08 64.1 12.0 23 388-410 25-47 (230)
353 PRK05973 replicative DNA helic 97.3 0.0014 3E-08 66.1 9.8 32 388-419 65-99 (237)
354 PRK03839 putative kinase; Prov 97.3 0.00022 4.8E-09 68.8 4.0 30 389-418 2-31 (180)
355 PRK11823 DNA repair protein Ra 97.3 0.0022 4.8E-08 71.0 12.2 105 388-495 81-205 (446)
356 PF04548 AIG1: AIG1 family; I 97.3 0.005 1.1E-07 61.2 13.7 99 389-496 2-126 (212)
357 PF13671 AAA_33: AAA domain; P 97.3 0.00017 3.7E-09 66.5 2.8 26 390-415 2-27 (143)
358 TIGR03499 FlhF flagellar biosy 97.3 0.00073 1.6E-08 70.3 7.8 35 387-421 194-233 (282)
359 cd00464 SK Shikimate kinase (S 97.3 0.00026 5.6E-09 66.2 4.0 30 389-418 1-30 (154)
360 smart00487 DEXDc DEAD-like hel 97.2 0.0013 2.9E-08 62.9 9.1 62 447-518 130-191 (201)
361 PRK09376 rho transcription ter 97.2 0.0022 4.9E-08 68.6 11.3 108 388-495 170-317 (416)
362 TIGR01128 holA DNA polymerase 97.2 0.014 3E-07 61.0 17.3 129 446-615 46-179 (302)
363 cd01131 PilT Pilus retraction 97.2 0.0015 3.3E-08 64.2 9.4 24 389-412 3-26 (198)
364 PF00437 T2SE: Type II/IV secr 97.2 0.00031 6.8E-09 72.4 4.7 97 354-457 100-208 (270)
365 TIGR02858 spore_III_AA stage I 97.2 0.0012 2.5E-08 68.1 8.8 26 387-412 111-136 (270)
366 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0019 4E-08 62.4 9.7 101 388-498 26-132 (177)
367 PRK14532 adenylate kinase; Pro 97.2 0.00028 6.1E-09 68.6 4.0 30 389-418 2-31 (188)
368 cd00983 recA RecA is a bacter 97.2 0.0016 3.5E-08 68.5 9.9 74 388-461 56-148 (325)
369 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0014 3E-08 61.0 8.5 98 387-498 26-127 (144)
370 PRK08154 anaerobic benzoate ca 97.2 0.00064 1.4E-08 71.7 6.9 56 363-418 109-164 (309)
371 cd02027 APSK Adenosine 5'-phos 97.2 0.00097 2.1E-08 62.5 7.4 31 390-420 2-35 (149)
372 PRK06067 flagellar accessory p 97.2 0.0018 3.8E-08 65.4 9.6 24 387-410 25-48 (234)
373 cd03243 ABC_MutS_homologs The 97.2 0.0021 4.6E-08 63.3 9.9 22 388-409 30-51 (202)
374 COG1102 Cmk Cytidylate kinase 97.2 0.0003 6.5E-09 65.5 3.5 28 390-417 3-30 (179)
375 PRK00771 signal recognition pa 97.2 0.0023 4.9E-08 70.3 10.9 35 386-420 94-131 (437)
376 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00033 7.2E-09 67.6 4.0 29 390-418 2-30 (183)
377 PRK14527 adenylate kinase; Pro 97.2 0.0037 8E-08 61.0 11.3 30 388-417 7-36 (191)
378 PLN02674 adenylate kinase 97.2 0.0012 2.5E-08 67.0 7.9 31 387-417 31-61 (244)
379 PRK13948 shikimate kinase; Pro 97.2 0.00045 9.7E-09 67.0 4.7 35 385-419 8-42 (182)
380 COG1936 Predicted nucleotide k 97.1 0.00035 7.5E-09 65.9 3.5 30 389-419 2-31 (180)
381 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0039 8.5E-08 61.3 11.2 20 389-408 30-49 (200)
382 PRK12724 flagellar biosynthesi 97.1 0.0051 1.1E-07 66.7 12.8 103 388-498 224-345 (432)
383 PRK06217 hypothetical protein; 97.1 0.00043 9.4E-09 67.1 4.3 31 389-419 3-33 (183)
384 PRK09361 radB DNA repair and r 97.1 0.0022 4.7E-08 64.3 9.4 34 388-421 24-60 (225)
385 PF09848 DUF2075: Uncharacteri 97.1 0.0016 3.4E-08 70.0 8.9 23 389-411 3-25 (352)
386 cd00227 CPT Chloramphenicol (C 97.1 0.00044 9.5E-09 66.5 4.0 32 388-419 3-34 (175)
387 COG2804 PulE Type II secretory 97.1 0.0024 5.3E-08 69.9 9.9 94 354-457 234-338 (500)
388 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0033 7.2E-08 64.7 10.6 91 356-456 58-159 (264)
389 TIGR02012 tigrfam_recA protein 97.1 0.0025 5.5E-08 67.0 9.8 74 388-461 56-148 (321)
390 PF08303 tRNA_lig_kinase: tRNA 97.1 0.027 5.8E-07 53.1 15.4 130 393-536 5-148 (168)
391 PF08433 KTI12: Chromatin asso 97.1 0.002 4.3E-08 66.5 8.8 83 389-483 3-97 (270)
392 PRK14530 adenylate kinase; Pro 97.1 0.00048 1E-08 68.6 4.1 30 389-418 5-34 (215)
393 COG0703 AroK Shikimate kinase 97.1 0.00044 9.6E-09 65.7 3.6 32 388-419 3-34 (172)
394 cd02020 CMPK Cytidine monophos 97.1 0.00051 1.1E-08 63.4 3.9 30 390-419 2-31 (147)
395 PRK13808 adenylate kinase; Pro 97.1 0.0061 1.3E-07 64.4 12.3 30 389-418 2-31 (333)
396 smart00534 MUTSac ATPase domai 97.1 0.0054 1.2E-07 59.6 11.2 20 390-409 2-21 (185)
397 PF02562 PhoH: PhoH-like prote 97.0 0.00086 1.9E-08 66.0 5.4 23 389-411 21-43 (205)
398 cd01428 ADK Adenylate kinase ( 97.0 0.00052 1.1E-08 66.8 3.9 29 390-418 2-30 (194)
399 PRK05574 holA DNA polymerase I 97.0 0.041 9E-07 58.5 18.8 187 386-616 16-215 (340)
400 cd03228 ABCC_MRP_Like The MRP 97.0 0.0038 8.3E-08 59.7 9.8 104 386-501 27-158 (171)
401 PRK06762 hypothetical protein; 97.0 0.00061 1.3E-08 64.8 4.1 33 388-420 3-35 (166)
402 KOG1029 Endocytic adaptor prot 97.0 0.071 1.5E-06 60.3 20.4 24 127-150 364-387 (1118)
403 PF01745 IPT: Isopentenyl tran 97.0 0.0023 5E-08 62.6 7.9 135 389-536 3-144 (233)
404 cd03247 ABCC_cytochrome_bd The 97.0 0.0038 8.2E-08 60.2 9.6 26 386-411 27-52 (178)
405 cd02022 DPCK Dephospho-coenzym 97.0 0.0026 5.5E-08 61.5 8.4 27 390-417 2-28 (179)
406 TIGR01313 therm_gnt_kin carboh 97.0 0.00053 1.1E-08 65.0 3.5 27 390-416 1-27 (163)
407 PF05872 DUF853: Bacterial pro 97.0 0.0044 9.5E-08 66.9 10.6 73 446-525 255-329 (502)
408 PRK13894 conjugal transfer ATP 97.0 0.0025 5.4E-08 67.3 8.7 68 388-456 149-229 (319)
409 PRK06547 hypothetical protein; 97.0 0.00075 1.6E-08 64.8 4.4 34 385-418 13-46 (172)
410 cd02021 GntK Gluconate kinase 97.0 0.00061 1.3E-08 63.5 3.7 27 390-416 2-28 (150)
411 PTZ00121 MAEBL; Provisional 97.0 0.089 1.9E-06 63.2 21.5 19 511-529 1959-1977(2084)
412 PRK06696 uridine kinase; Valid 97.0 0.0012 2.7E-08 66.1 6.0 37 387-423 22-61 (223)
413 TIGR00708 cobA cob(I)alamin ad 97.0 0.0061 1.3E-07 58.3 10.3 116 389-516 7-155 (173)
414 PRK06585 holA DNA polymerase I 96.9 0.059 1.3E-06 57.6 19.1 179 387-616 20-212 (343)
415 PTZ00088 adenylate kinase 1; P 96.9 0.00079 1.7E-08 67.7 4.3 30 389-418 8-37 (229)
416 PRK13946 shikimate kinase; Pro 96.9 0.00079 1.7E-08 65.4 4.2 32 388-419 11-42 (184)
417 COG1419 FlhF Flagellar GTP-bin 96.9 0.0044 9.6E-08 66.3 10.1 26 386-411 202-227 (407)
418 PF13245 AAA_19: Part of AAA d 96.9 0.0012 2.6E-08 54.4 4.5 22 390-411 13-35 (76)
419 cd01393 recA_like RecA is a b 96.9 0.0044 9.6E-08 61.9 9.6 24 388-411 20-43 (226)
420 cd03246 ABCC_Protease_Secretio 96.9 0.0083 1.8E-07 57.5 11.1 24 388-411 29-52 (173)
421 PLN02200 adenylate kinase fami 96.9 0.00094 2E-08 67.5 4.7 35 387-423 43-77 (234)
422 cd01853 Toc34_like Toc34-like 96.9 0.011 2.3E-07 60.4 12.4 25 386-410 30-54 (249)
423 PRK12608 transcription termina 96.9 0.0067 1.5E-07 64.8 11.2 25 388-412 134-158 (380)
424 PRK03731 aroL shikimate kinase 96.9 0.00091 2E-08 63.9 4.3 30 389-418 4-33 (171)
425 PRK12727 flagellar biosynthesi 96.9 0.0036 7.9E-08 69.5 9.4 24 388-411 351-374 (559)
426 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0069 1.5E-07 59.9 10.6 23 388-410 30-52 (204)
427 cd03214 ABC_Iron-Siderophores_ 96.9 0.0075 1.6E-07 58.2 10.6 25 387-411 25-49 (180)
428 TIGR01420 pilT_fam pilus retra 96.9 0.0013 2.9E-08 70.3 5.9 67 388-456 123-205 (343)
429 PRK05057 aroK shikimate kinase 96.9 0.001 2.2E-08 64.0 4.3 33 388-420 5-37 (172)
430 cd01130 VirB11-like_ATPase Typ 96.9 0.0013 2.7E-08 64.1 5.1 68 388-456 26-110 (186)
431 TIGR00152 dephospho-CoA kinase 96.9 0.0033 7.2E-08 61.2 8.1 28 390-417 2-29 (188)
432 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0068 1.5E-07 57.5 10.0 24 388-411 22-45 (162)
433 PRK13833 conjugal transfer pro 96.9 0.003 6.4E-08 66.7 8.1 68 388-456 145-225 (323)
434 PRK13764 ATPase; Provisional 96.9 0.0015 3.4E-08 74.0 6.3 25 388-412 258-282 (602)
435 TIGR02788 VirB11 P-type DNA tr 96.9 0.0054 1.2E-07 64.6 10.0 68 388-456 145-228 (308)
436 PHA00350 putative assembly pro 96.9 0.0021 4.5E-08 69.4 6.9 117 389-511 3-158 (399)
437 TIGR00064 ftsY signal recognit 96.8 0.015 3.4E-07 60.0 13.0 36 385-420 70-108 (272)
438 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0095 2.1E-07 59.7 11.1 22 388-409 32-53 (222)
439 TIGR01360 aden_kin_iso1 adenyl 96.8 0.00096 2.1E-08 64.5 3.9 29 389-417 5-33 (188)
440 PRK02496 adk adenylate kinase; 96.8 0.001 2.2E-08 64.5 4.0 30 389-418 3-32 (184)
441 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0075 1.6E-07 59.0 10.2 26 386-411 34-59 (194)
442 COG0529 CysC Adenylylsulfate k 96.8 0.0025 5.5E-08 60.3 6.4 37 387-423 23-62 (197)
443 PF01443 Viral_helicase1: Vira 96.8 0.0013 2.9E-08 65.9 5.0 22 390-411 1-22 (234)
444 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.8 0.0066 1.4E-07 59.8 9.9 23 389-411 40-62 (205)
445 PRK14529 adenylate kinase; Pro 96.8 0.0042 9.1E-08 62.1 8.4 28 389-416 2-29 (223)
446 TIGR02782 TrbB_P P-type conjug 96.8 0.0012 2.7E-08 69.1 4.8 68 388-456 133-214 (299)
447 cd03238 ABC_UvrA The excision 96.8 0.018 3.9E-07 55.6 12.5 22 388-409 22-43 (176)
448 PRK03846 adenylylsulfate kinas 96.8 0.0065 1.4E-07 59.6 9.7 36 386-421 23-61 (198)
449 COG4178 ABC-type uncharacteriz 96.8 0.0032 6.9E-08 70.9 8.2 27 385-411 417-443 (604)
450 TIGR01069 mutS2 MutS2 family p 96.8 0.017 3.7E-07 68.1 14.6 23 388-410 323-345 (771)
451 PRK13900 type IV secretion sys 96.8 0.0052 1.1E-07 65.3 9.4 68 388-456 161-245 (332)
452 TIGR01351 adk adenylate kinase 96.8 0.0011 2.3E-08 65.9 3.9 29 390-418 2-30 (210)
453 PRK14730 coaE dephospho-CoA ki 96.8 0.0036 7.9E-08 61.4 7.6 29 389-417 3-31 (195)
454 COG1067 LonB Predicted ATP-dep 96.8 0.02 4.4E-07 65.6 14.5 143 446-616 225-401 (647)
455 cd03223 ABCD_peroxisomal_ALDP 96.8 0.019 4.2E-07 54.6 12.4 26 386-411 26-51 (166)
456 TIGR00767 rho transcription te 96.8 0.0036 7.8E-08 67.4 7.9 28 385-412 166-193 (415)
457 PF06745 KaiC: KaiC; InterPro 96.8 0.0072 1.6E-07 60.5 9.8 123 387-516 19-184 (226)
458 PF01926 MMR_HSR1: 50S ribosom 96.8 0.0051 1.1E-07 54.6 7.8 21 390-410 2-22 (116)
459 PRK00279 adk adenylate kinase; 96.8 0.0012 2.6E-08 65.7 4.1 30 389-418 2-31 (215)
460 PF13238 AAA_18: AAA domain; P 96.8 0.00099 2.1E-08 59.8 3.1 22 390-411 1-22 (129)
461 PF10443 RNA12: RNA12 protein; 96.8 0.074 1.6E-06 57.6 17.6 80 449-534 151-232 (431)
462 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.0082 1.8E-07 64.5 10.5 24 388-411 135-158 (358)
463 PRK10416 signal recognition pa 96.8 0.03 6.4E-07 59.2 14.5 26 386-411 113-138 (318)
464 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0091 2E-07 60.4 10.3 25 386-410 20-44 (237)
465 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.01 2.2E-07 60.9 10.8 24 387-410 36-59 (259)
466 PHA02530 pseT polynucleotide k 96.7 0.0042 9.2E-08 65.0 8.1 23 389-411 4-26 (300)
467 cd02019 NK Nucleoside/nucleoti 96.7 0.0018 4E-08 52.2 3.9 22 390-411 2-23 (69)
468 cd03239 ABC_SMC_head The struc 96.7 0.013 2.9E-07 56.5 10.7 24 389-412 24-47 (178)
469 cd01878 HflX HflX subfamily. 96.7 0.032 7E-07 54.7 13.6 24 387-410 41-64 (204)
470 cd03115 SRP The signal recogni 96.7 0.016 3.4E-07 55.5 11.0 33 389-421 2-37 (173)
471 PTZ00121 MAEBL; Provisional 96.7 0.15 3.3E-06 61.3 20.7 8 522-529 1932-1939(2084)
472 PF10923 DUF2791: P-loop Domai 96.7 0.075 1.6E-06 57.9 17.3 57 349-410 15-72 (416)
473 cd01122 GP4d_helicase GP4d_hel 96.7 0.01 2.3E-07 61.0 10.4 33 387-419 30-66 (271)
474 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.012 2.7E-07 59.1 10.7 23 388-410 20-42 (235)
475 KOG0922 DEAH-box RNA helicase 96.7 0.009 1.9E-07 66.9 10.2 43 444-496 161-203 (674)
476 cd03230 ABC_DR_subfamily_A Thi 96.7 0.015 3.3E-07 55.7 10.7 25 387-411 26-50 (173)
477 cd03233 ABC_PDR_domain1 The pl 96.7 0.016 3.5E-07 57.1 11.1 27 386-412 32-58 (202)
478 PRK09354 recA recombinase A; P 96.7 0.0084 1.8E-07 63.7 9.5 73 388-460 61-152 (349)
479 cd00984 DnaB_C DnaB helicase C 96.7 0.0095 2.1E-07 60.2 9.7 33 387-419 13-49 (242)
480 TIGR00416 sms DNA repair prote 96.7 0.0066 1.4E-07 67.3 9.1 72 388-460 95-184 (454)
481 COG1117 PstB ABC-type phosphat 96.6 0.0061 1.3E-07 59.6 7.6 23 389-411 35-57 (253)
482 TIGR00150 HI0065_YjeE ATPase, 96.6 0.003 6.6E-08 57.8 5.3 27 388-414 23-49 (133)
483 TIGR01425 SRP54_euk signal rec 96.6 0.03 6.5E-07 61.3 13.8 35 386-420 99-136 (429)
484 PRK13851 type IV secretion sys 96.6 0.006 1.3E-07 65.0 8.3 68 388-456 163-246 (344)
485 PRK05629 hypothetical protein; 96.6 0.097 2.1E-06 55.4 17.5 178 388-615 7-193 (318)
486 TIGR01448 recD_rel helicase, p 96.6 0.0033 7.2E-08 73.7 6.8 41 360-411 322-362 (720)
487 PHA00012 I assembly protein 96.6 0.0076 1.7E-07 62.7 8.6 58 445-507 80-137 (361)
488 cd03229 ABC_Class3 This class 96.6 0.016 3.4E-07 55.8 10.4 24 388-411 27-50 (178)
489 PRK14737 gmk guanylate kinase; 96.6 0.0023 5E-08 62.3 4.6 25 387-411 4-28 (186)
490 COG1643 HrpA HrpA-like helicas 96.6 0.01 2.2E-07 69.7 10.7 24 389-412 67-90 (845)
491 PRK10263 DNA translocase FtsK; 96.6 0.021 4.6E-07 69.1 13.3 76 448-530 1142-1219(1355)
492 cd01852 AIG1 AIG1 (avrRpt2-ind 96.6 0.011 2.3E-07 58.0 9.3 22 389-410 2-23 (196)
493 TIGR01613 primase_Cterm phage/ 96.6 0.007 1.5E-07 63.7 8.4 134 363-516 54-202 (304)
494 COG2874 FlaH Predicted ATPases 96.6 0.0081 1.8E-07 58.7 8.0 26 385-410 25-51 (235)
495 cd03232 ABC_PDR_domain2 The pl 96.6 0.028 6E-07 54.9 12.1 23 388-410 34-56 (192)
496 TIGR00455 apsK adenylylsulfate 96.6 0.017 3.6E-07 55.9 10.4 38 385-422 16-56 (184)
497 PRK00081 coaE dephospho-CoA ki 96.6 0.0061 1.3E-07 59.7 7.4 27 389-416 4-30 (194)
498 PLN02840 tRNA dimethylallyltra 96.6 0.01 2.2E-07 64.5 9.7 33 388-420 22-54 (421)
499 PF01583 APS_kinase: Adenylyls 96.6 0.0034 7.4E-08 59.0 5.3 35 389-423 4-41 (156)
500 COG1116 TauB ABC-type nitrate/ 96.6 0.012 2.7E-07 58.9 9.4 23 389-411 31-53 (248)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-129 Score=983.35 Aligned_cols=622 Identities=63% Similarity=0.903 Sum_probs=569.8
Q ss_pred CcccchhhHHHHHHHHHhhhhcccccccCCCCccCCCCCCCCCCCCCC-Ccchh--hhhccC-CCCCCCCCCCCCCchhh
Q 006700 1 MPASKLSSCLAVAAAVASLSTASNRAFADAPSRFSFFSSSPQPTSSGN-DEAEQ--TADAQK-SREPEEPRGSGFDPEAL 76 (635)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~--~~~~~~-~~~~~~~~~~~fd~~~l 76 (635)
||++ +++++.++++++...+-+.+|+||+|.|++||++|++|-||. |++++ +.+... +.+++...+++|||++|
T Consensus 1 Ma~k--c~a~~i~a~~~S~~~~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 1 MAQK--CAAGSISALAMSWLFGINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEAL 78 (630)
T ss_pred Cchh--HHHHHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHH
Confidence 6666 444445556666677777899999999999998876643332 22111 111111 11233345789999999
Q ss_pred hHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006700 77 ERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDE 156 (635)
Q Consensus 77 er~a~~~~~l~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~~~~~d~ 156 (635)
||||||||+||.|||+|++|+++++||+|+|.|++++.++|++++++.++|++|+.+||+||++++|+++++|+++|+|+
T Consensus 79 ERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~ 158 (630)
T KOG0742|consen 79 ERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDK 158 (630)
T ss_pred HHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006700 157 LARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTE 236 (635)
Q Consensus 157 l~r~~~q~e~e~~~~~~e~~~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~k~~~E~~~~~~~~~~~~ 236 (635)
|+|||||.+++.|+..|++.+++||++++|+|++|+.++++++.++++++.+++++++++.+.++++|+++++++++.+.
T Consensus 159 larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~e 238 (630)
T KOG0742|consen 159 LARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNE 238 (630)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhhHHHHHHHHhhhhccccccceeecccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhCCCCc
Q 006700 237 DHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSL 316 (635)
Q Consensus 237 d~~~~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg~p~l 316 (635)
|+++++|+.++.++|++|+++|+++|+++|+||+++++|++++...|+|+|++++|+|++++|+.|+|+||+++||+|+|
T Consensus 239 dvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~LGqPSL 318 (630)
T KOG0742|consen 239 DVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRLGQPSL 318 (630)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcchhHHHHHHHhhhccCCCCCCcccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCC
Q 006700 317 IRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPP 396 (635)
Q Consensus 317 ~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~Gpp 396 (635)
|||+|+..|||.+.++.....+.. .......+.++|++||++|.+..+|++++..+.|++.+..|++||||||||
T Consensus 319 iREsSrg~~pw~gsls~~k~~i~~-----~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPP 393 (630)
T KOG0742|consen 319 IRESSRGRFPWIGSLSALKHPIQG-----SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPP 393 (630)
T ss_pred hhhhccccCCCcccHHHHhchhhh-----hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCC
Confidence 999999999999998877665511 123345667789999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHH
Q 006700 397 GTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 476 (635)
Q Consensus 397 GtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~ 476 (635)
|||||++|+.||.++|++|..++|+|+.++|.+.+..++++|+|++++++|.+|||||+|.|+++|+...|+++.+..||
T Consensus 394 GTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLN 473 (630)
T KOG0742|consen 394 GTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALN 473 (630)
T ss_pred CCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhh
Q 006700 477 ALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556 (635)
Q Consensus 477 ~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (635)
.||..+++.+++|++|++||.|.+||+++.+|||++|+||+|+.+||.+||..||++|.........+..|.++|+...+
T Consensus 474 AlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ 553 (630)
T KOG0742|consen 474 ALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQ 553 (630)
T ss_pred HHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999733333336789999999889
Q ss_pred hhhccC-CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhcccccccCC
Q 006700 557 KITIKD-LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKLAAEGS 629 (635)
Q Consensus 557 ~~~~~~-~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~l~~~~~ 629 (635)
+|.+.+ .++..|.+.|++|+|||||+|.+|+..||+++|++.+|++|..+|++++++++.+|++++.|..++.
T Consensus 554 ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~~La~e~~ 627 (630)
T KOG0742|consen 554 RIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRMWLAAEGS 627 (630)
T ss_pred eeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999887 6668899999999999999999999999999999999999999999999999999999995544443
No 2
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=100.00 E-value=1.4e-64 Score=500.86 Aligned_cols=259 Identities=59% Similarity=0.795 Sum_probs=254.4
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006700 60 SREPEEPRGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNL 139 (635)
Q Consensus 60 ~~~~~~~~~~~fd~~~ler~a~~~~~l~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~ 139 (635)
++.++...++||||++|||||||||+|++|||||+||+|+++||.|||+|+++++++|+++.+|+++++.|+++||+||+
T Consensus 18 ~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~QE~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~Rkt 97 (276)
T PF12037_consen 18 RNDNPRTTASGFDPEALERAAKALRELNSSPHAKKAFELMKKQEETKQAELQAKIAEYEAAQAQAEIERQRVEAEERRKT 97 (276)
T ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHhcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006700 140 VQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRV 219 (635)
Q Consensus 140 ~~~~~~~~~~~~~~~d~l~r~~~q~e~e~~~~~~e~~~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~ 219 (635)
++++++++++++||+|+|+|+||+++++.++.+|++++++||+++.|+|++|+.++++|+.+++++.+++++|++++++.
T Consensus 98 ~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~ 177 (276)
T PF12037_consen 98 LQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERA 177 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhhhhHHHHHHHHhhhhccccccceeecccccchhheehhhhhhhhhhhhccCc
Q 006700 220 KAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREG 299 (635)
Q Consensus 220 k~~~E~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~ 299 (635)
+.++|++++++.+|.|.|+++++|+.++.++|.+||++|+++|+++|+|+..+++|+++++.+|+++|++++|||++++|
T Consensus 178 k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~g 257 (276)
T PF12037_consen 178 KAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREG 257 (276)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhCCCCccc
Q 006700 300 ARVTWGYVNRILGQPSLIR 318 (635)
Q Consensus 300 ~~~~~~~i~~~lg~p~l~r 318 (635)
++|+|+||+++||+|+|||
T Consensus 258 t~v~~~yie~rLGkPsLVR 276 (276)
T PF12037_consen 258 TRVAGRYIEARLGKPSLVR 276 (276)
T ss_pred HHHHHHHHHHHcCCCccCC
Confidence 9999999999999999997
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-36 Score=303.72 Aligned_cols=242 Identities=27% Similarity=0.403 Sum_probs=213.0
Q ss_pred CCcccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC
Q 006700 348 AGPVEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (635)
Q Consensus 348 ~~~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~ 422 (635)
.....|..++++|-|.++..+.|+..+.. +.++ ..+..||++||||||||||||++|+++|++.+..|+.+.|+.
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 33457888999999999999999887753 2222 456689999999999999999999999999999999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCC
Q 006700 423 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNR 497 (635)
Q Consensus 423 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~ 497 (635)
+.. +.|++..-++++|..|+... ||||||||||++..+|.+. +-....+.++..||..++ +..+++-||++||+
T Consensus 221 lVqKYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 875 78899999999999998766 7999999999999988654 335677888888888887 66789999999999
Q ss_pred CCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006700 498 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 575 (635)
Q Consensus 498 ~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 575 (635)
++.|||++++ |||..|+||+|+.+.|.+||+.+..++.. -++.+|+.|+..|
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--------------------------~~dvd~e~la~~~ 353 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--------------------------ADDVDLELLARLT 353 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--------------------------ccCcCHHHHHHhc
Confidence 9999999999 99999999999999999999999988765 4556799999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 576 EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 576 ~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+||||+||+.+|.-+-..|.......+|.+||.++++..+.
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 99999999999998888888878889999999999988764
No 4
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=274.24 Aligned_cols=237 Identities=29% Similarity=0.453 Sum_probs=203.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccC-CCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-cchhh
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQ-APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQ 429 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~-~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~~~~~ 429 (635)
.+...|++||||++.++.-+-+...+.++...+ .-|+|+|||||||||||++|++||.+.+.|++.+....+. ...++
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 456689999999999999999999999985544 6678999999999999999999999999999999887764 47788
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcHHHHc
Q 006700 430 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAITD 507 (635)
Q Consensus 430 ~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~~l~~ 507 (635)
+...++++++.|.... |||+||||+|++.-+|.-.....+...++|.||..++ ..+..++.|++||.|+.||++++|
T Consensus 195 gar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 195 GARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred HHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh
Confidence 9999999999999887 7999999999998777665556677889999999987 455679999999999999999999
Q ss_pred cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH-
Q 006700 508 RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL- 586 (635)
Q Consensus 508 R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L- 586 (635)
||.+.|+|.+|+.++|..|++.|++.+.. --+..+..++..|.|||||||..=
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Pl--------------------------pv~~~~~~~~~~t~g~SgRdikekv 327 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPL--------------------------PVDADLRYLAAKTKGMSGRDIKEKV 327 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCC--------------------------ccccCHHHHHHHhCCCCchhHHHHH
Confidence 99999999999999999999999998765 122348899999999999999763
Q ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 587 MASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 587 ~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
+..+-.-+...+...|+.+|+..+++...
T Consensus 328 lK~aLh~Ai~ed~e~v~~edie~al~k~r 356 (368)
T COG1223 328 LKTALHRAIAEDREKVEREDIEKALKKER 356 (368)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHhhc
Confidence 44444444444667899999999998743
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=302.73 Aligned_cols=239 Identities=27% Similarity=0.424 Sum_probs=207.9
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhc-----ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~-----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~ 424 (635)
...|..+|+++-|.++++..|++.+...-. .+.+..|+++||||||||||||++|++||.+++++|+.+.|.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 346778999999999999999987765322 244558899999999999999999999999999999999999986
Q ss_pred c-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006700 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 425 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l 501 (635)
. +.++++..++.+|+.|+... ||||||||||.+...|++.. +....++|+.||.+++ ...++|+||++||+|+.|
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 5 78899999999999998877 59999999999999997443 4778899999999997 556799999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
|+++++ |||.+|++|+|+.+.|.+||+.+++++.. -.+.++..||..|+|||
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--------------------------~~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF--------------------------SEDVDLEELAQATEGYS 637 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC--------------------------CccccHHHHHHHhccCC
Confidence 999999 99999999999999999999999988765 23357999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC--CCCccCHHHHHHHHHHHHh
Q 006700 580 GREIAKLMASVQAAVYAR--PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s--~~~~lt~~~i~~~l~~~~~ 616 (635)
|+||..+|..+...+... +-..|+..+|.+++....+
T Consensus 638 GAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 638 GAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 999999998666555542 3467899999999987665
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-33 Score=290.24 Aligned_cols=243 Identities=26% Similarity=0.377 Sum_probs=208.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~ 428 (635)
...|++|-|.++.+..|++++..++++ +.++.-|++|||+||||||||+||+++|.+.+.||+...|+.+.. +.+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 446999999999999999999998875 567788899999999999999999999999999999999999876 567
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcHHHH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAIT 506 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~~l~ 506 (635)
.+...++++|..|+... ||||||||||++..+|+..... ...+.||.||..++ ..+..|+||++||.|+.||+++.
T Consensus 380 vGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred ccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 78889999999998777 7999999999999999876644 78899999999997 45668999999999999999999
Q ss_pred c--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHH
Q 006700 507 D--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 584 (635)
Q Consensus 507 ~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 584 (635)
+ |||.+|.+|.||..-|.+||..|+.+... -.+.++.-||+-|.||||+||.
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--------------------------~~~VD~~iiARGT~GFsGAdLa 511 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL--------------------------DEDVDPKIIARGTPGFSGADLA 511 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCc--------------------------ccCCCHhHhccCCCCCchHHHH
Confidence 8 99999999999999999999999988765 2344577889999999999999
Q ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhcccc
Q 006700 585 KLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKL 624 (635)
Q Consensus 585 ~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~l 624 (635)
+|+|.+-..+...+...+|..+++.+-+..+-...++..+
T Consensus 512 NlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~ 551 (752)
T KOG0734|consen 512 NLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMV 551 (752)
T ss_pred HHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccc
Confidence 9998333323334557899999998877776555555433
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=8.7e-30 Score=273.91 Aligned_cols=247 Identities=22% Similarity=0.351 Sum_probs=203.0
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|++|.|.+.+++.|...+.. +.++ ..+..|++++|||||||||||++|+++|..++.+|+.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46788999999999999999987754 2222 233467899999999999999999999999999999998877643
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~ 500 (635)
+.++....+..+|..+.... |+||||||+|.++.++.+. +.+...+..+..++..++. ...+++||+|||.++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 45566778899999887655 7999999999998876432 2335567788888888763 3467999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+|+++++ |||..|+|++|+.++|..||+.++.++.. ..+..+..++..|+||
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--------------------------~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--------------------------SEEVDLEDFVSRPEKI 350 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--------------------------CcccCHHHHHHHcCCC
Confidence 9999997 99999999999999999999999876543 2334688999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhcccc
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKL 624 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~l 624 (635)
||+||..+|..+...+...+...|+.+||.+++......+...+.|
T Consensus 351 sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~~~~ 396 (398)
T PTZ00454 351 SAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRDYDF 396 (398)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccchhc
Confidence 9999999999887777777778999999999999987655544444
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=282.76 Aligned_cols=242 Identities=25% Similarity=0.372 Sum_probs=202.0
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
.-|+.+|++|-+..++...|...+.+ ++.. ..+..+|.+||||||||||||++|+++|++.|.+|+.+.|..+.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 46889999999999999999886654 3322 334566789999999999999999999999999999999999876
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCc
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~ 502 (635)
|.|+++..++.+|..|+.+. ||||||||+|+|.+.|+..+ +.....++|.||.+++ ....+|.||++||+|+.+|
T Consensus 584 kYVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 78899999999999998877 79999999999999998876 6677889999999997 4677899999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--CC
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GF 578 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~ 578 (635)
|++++ |||..+++++|+.++|..||+...+.... + .-+|.+++.||..+. ||
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~---p---------------------l~~dVdl~eia~~~~c~gf 717 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP---P---------------------LSSDVDLDEIARNTKCEGF 717 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC---C---------------------CCcccCHHHHhhcccccCC
Confidence 99999 99999999999999999999999875221 0 135567999997755 99
Q ss_pred CHHHHHHHHHHHHHHH-----HcCC-----------CCccCHHHHHHHHHHHHhhh
Q 006700 579 SGREIAKLMASVQAAV-----YARP-----------DCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa-----~~s~-----------~~~lt~~~i~~~l~~~~~~~ 618 (635)
||+||..||..+-..+ .... .+.+|..+|++++....|.-
T Consensus 718 tGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 718 TGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9999999996333322 2110 23578889999998877643
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=266.02 Aligned_cols=242 Identities=23% Similarity=0.362 Sum_probs=202.4
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHh-c---ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-N---TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~---~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..|...|++|.|..++++.|.+.+..-. . .+....|+++||++||||||||+||+++|.++|..|+.++.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 4567889999999999999988765321 1 2333478999999999999999999999999999999999988865
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC------CCCCEEEEEEeCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD------QSRDIVLVLATNRPG 499 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~------~~~~viiI~ttN~~~ 499 (635)
+-|+++..++-+|+.|+.+. |++|||||||.|+..|++.+..+..+.+=+.||..++- ..+-|+|+++||.|+
T Consensus 285 wRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 78899999999999998887 79999999999999999888889999999999988762 122367777899999
Q ss_pred CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 500 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 500 ~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
+||.+|++||...|++|+|+.+.|..+|+..+..... .++..++.|+..++|||
T Consensus 364 diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~--------------------------~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 364 DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL--------------------------DDPVNLEDLAERSEGYS 417 (491)
T ss_pred chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC--------------------------CCCccHHHHHHHhcCCC
Confidence 9999999999999999999999999999999877654 45567899999999999
Q ss_pred HHHHHHHHHHHHHHHHc-----C------------CCCccCHHHHHHHHHHHHhhhh
Q 006700 580 GREIAKLMASVQAAVYA-----R------------PDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~-----s------------~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
|.||..+|..+-..+.. . ....++..||+.++....+.-+
T Consensus 418 GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 418 GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999999644333222 1 1235889999999998877544
No 10
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.6e-30 Score=282.39 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=201.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhc--ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chh
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATAN--TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 428 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~--~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~ 428 (635)
.+...|++|.|.+.+++.+......+.. ...+..+++++|||||||||||++|+++|..++.+++.++++.+.. +.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 4566789999999999998875544321 2234467789999999999999999999999999999999887653 667
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHc-
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD- 507 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~- 507 (635)
++...+..+|..+.... ||||||||||.++..+...+.+.....++..|+..+.....+++||+|||.++.+|+++++
T Consensus 302 ese~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~ 380 (489)
T CHL00195 302 ESESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRK 380 (489)
T ss_pred hHHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCC
Confidence 78889999999887765 7999999999998765554445667788999998888777889999999999999999997
Q ss_pred -cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH
Q 006700 508 -RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586 (635)
Q Consensus 508 -R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 586 (635)
|||..++|++|+.++|..||+.++.+... ...++..+..|+..|+||||+||..+
T Consensus 381 GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~------------------------~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 381 GRFDEIFFLDLPSLEEREKIFKIHLQKFRP------------------------KSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHhhcCC------------------------CcccccCHHHHHhhcCCCCHHHHHHH
Confidence 99999999999999999999999987542 01345578999999999999999999
Q ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 587 MASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 587 ~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
|..+...++.. +..+|.+++..++...+|..
T Consensus 437 v~eA~~~A~~~-~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 437 IIEAMYIAFYE-KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHc-CCCcCHHHHHHHHHhcCCCc
Confidence 98776666653 45699999999999999853
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9e-30 Score=283.67 Aligned_cols=242 Identities=25% Similarity=0.376 Sum_probs=209.9
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
.+....|.||.|.++++..|.+++..+.|+ ..+..+|+++||+||||||||+||+++|.+.|.||+.++|+++..
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 345578999999999999999999999986 345578999999999999999999999999999999999999876
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcc---cccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN---SIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~---~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+.....++++|..++... |||+||||||++...|. ..+........||++|-+++ ....+++|+++||+++.
T Consensus 384 ~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 34455778999999998766 79999999999999884 23445677789999999997 34567999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+|+++++ |||..|++++|+...|.+|++.++..... ..++.++..||.+|.||
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-------------------------~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-------------------------DDEDVDLSKLASLTPGF 517 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-------------------------CcchhhHHHHHhcCCCC
Confidence 9999998 99999999999999999999999987654 13556777799999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
+|.||.++|+.+...+.......|+..++..+++..+..+
T Consensus 518 ~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 518 SGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred cHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccc
Confidence 9999999999777777777778999999999999665544
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.3e-30 Score=272.29 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=184.3
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-cch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~~~ 427 (635)
+...|.++-|.+.....|..++..+..+ ..+..|+++||||||||||||+||++||.+++.||+.+++..+. .+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 3558999999999999999998887664 45568999999999999999999999999999999999999875 488
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC------CCCCEEEEEEeCCCCCC
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD------QSRDIVLVLATNRPGDL 501 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~------~~~~viiI~ttN~~~~l 501 (635)
|+++..++++|+.|.... ||||||||||++.++|...+ .+-.+.++..||..++. ....|+||++||+|+.|
T Consensus 265 GESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 999999999999998776 79999999999999998744 34456677777777763 24679999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
||++++ |||..|.+..|+...|.+||+..++.+.. -.+.++..||..|.||.
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl--------------------------~g~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRL--------------------------SGDFDFKQLAKLTPGFV 396 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC--------------------------CCCcCHHHHHhcCCCcc
Confidence 999998 99999999999999999999999987655 12346889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAV 594 (635)
Q Consensus 580 grdI~~L~~~~q~aa 594 (635)
|+||..||..+-..+
T Consensus 397 GADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 397 GADLMALCREAAFVA 411 (802)
T ss_pred chhHHHHHHHHHHHH
Confidence 999999996544433
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-28 Score=236.67 Aligned_cols=242 Identities=24% Similarity=0.360 Sum_probs=206.4
Q ss_pred CCcccccccCCccccChHHHHHHHHHHHHHh-----cccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC
Q 006700 348 AGPVEAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (635)
Q Consensus 348 ~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~-----~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~ 422 (635)
.....|..++.++-|.+-.++.++..+..-- ....+..||+++|+|||||||||+|++++|++....|+.+.|+.
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 3446788899999999988888887665311 12456689999999999999999999999999999999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccc--ccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCC
Q 006700 423 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS--IHMSEAQRSALNALLFRTG--DQSRDIVLVLATNR 497 (635)
Q Consensus 423 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~--~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~ 497 (635)
+.. +.+++...++++|..++... |+||||||+|.+..+|-. .+.....+.+|..||..++ +...|+-+||+||+
T Consensus 225 fvqkylgegprmvrdvfrlakena-psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr 303 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR 303 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc
Confidence 864 67788899999999998666 799999999999988754 3445678888999998886 56789999999999
Q ss_pred CCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006700 498 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 575 (635)
Q Consensus 498 ~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 575 (635)
.+.+||++++ |+|..|+||+|+..+++-++..+..++.. -++.+++.+..+-
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l--------------------------s~~vdle~~v~rp 357 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL--------------------------SDEVDLEDLVARP 357 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC--------------------------CcccCHHHHhcCc
Confidence 9999999998 99999999999999999999988877655 3445688888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 576 EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 576 ~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+..||+||..+|..+-..+...+..++...||+++....+.
T Consensus 358 dkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 358 DKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred cccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 89999999999987777777777889999999999887664
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=5.1e-28 Score=261.30 Aligned_cols=244 Identities=25% Similarity=0.391 Sum_probs=199.2
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|++++|.+..++.|...+.. +.+. ..+..+++++|||||||||||++|+++|..++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45677889999999999999887654 2221 334567889999999999999999999999999999999988754
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccC--cHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM--SEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~--~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~ 500 (635)
+.+.....++.+|..+.... |+||||||+|.+++.+..... +...+..+..++..++. ...+++||+|||.++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 45566778888998887655 799999999999877654322 34566777788877652 3458999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+|+++++ |||..|+|++|+.++|.+||+.++..... -.+..+..|+..|+||
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--------------------------~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--------------------------ADDVDLEELAELTEGA 336 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--------------------------CCcCCHHHHHHHcCCC
Confidence 9999997 99999999999999999999998876543 1223578899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhc
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 621 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~ 621 (635)
||+||..+|..+-..+...+...|+.+||.++++...+.+...
T Consensus 337 sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 337 SGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999998877777777778899999999999987755443
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=4.1e-28 Score=270.53 Aligned_cols=239 Identities=24% Similarity=0.394 Sum_probs=197.4
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..|...|++|+|.+.++..+..++..+.+.. .+..+++++|||||||||||++|++||..++.+|+.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 3567789999999999999999888766532 24567789999999999999999999999999999999887654
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDL 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l 501 (635)
+.+.....+..+|..+.... |+||||||+|.++..+... +.......+++.||..++. ...+++||+|||.++.+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 34456678899999987655 7899999999999877642 2234556788889888863 34579999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
|+++++ |||..|+|++|+.++|.+|++.++..... .++..+..++..|.|||
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--------------------------~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--------------------------APDVDLKAVARRTPGFS 260 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--------------------------CcchhHHHHHHhCCCCC
Confidence 999998 99999999999999999999999876433 13456889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
|+||..+|+.+...+...+...||.+++..+++....
T Consensus 261 gadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 261 GADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 9999999986655555556678999999999998764
No 16
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.8e-27 Score=268.78 Aligned_cols=239 Identities=23% Similarity=0.372 Sum_probs=197.9
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccc----cCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..+...|++|+|.+++++.+..++..+..... +..+++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 34567899999999999999999888776544 4566789999999999999999999999999999999988654
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccc--ccCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDL 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~--~~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l 501 (635)
..+.....+..+|..+.... ||||||||+|.+...++. .+.......+++.||..++. ...+++||+|||.++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 33345567888898887655 799999999999877653 22345667789999988763 34579999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
|+++++ |||..|.|++|+.++|..||+.++..... .++..+..++..|.|||
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--------------------------~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--------------------------SPDVSLELIARRTPGFS 388 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--------------------------chhHHHHHHHhcCCCCC
Confidence 999997 99999999999999999999999876332 45667999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
|+||..+++.+-..+...+...||.++|..+++..+.
T Consensus 389 gaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 389 GADLANLLNEAAILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 9999999986554444556678999999999988754
No 17
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=8.8e-27 Score=252.16 Aligned_cols=239 Identities=23% Similarity=0.355 Sum_probs=195.3
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|.+|.|.+..++.+..++.. +.+. ..+..++.++|||||||||||++|+++|..++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45778999999999999999887764 2221 234467789999999999999999999999999999999888754
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~ 500 (635)
+.+.....+..+|..+.... |+||||||||.++.++... +.....+..+..+|..++. ...++.||+|||.++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 45566777889998887654 7999999999999876532 2234556667777777652 3457999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+|+++++ |||..|+|++|+.++|..||..++.++.. -++..+..++..++||
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--------------------------~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--------------------------AEDVDLEEFIMAKDEL 388 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------CcCcCHHHHHHhcCCC
Confidence 9999986 99999999999999999999998876543 2334678899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
||+||..+|..+-..+...+...||.+||..+++..+.
T Consensus 389 sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 389 SGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 99999999987777777767789999999999998754
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.3e-29 Score=244.56 Aligned_cols=210 Identities=28% Similarity=0.460 Sum_probs=179.3
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc---cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~---~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..|...|++|-|.+..+++|...+.. +..+ .....|+++|||||||||||++||+++|.+.+..|+.++.+++.+
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 46788899999999999999886543 2222 223468899999999999999999999999999999999999875
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh---CCCCCCEEEEEEeCCCCCCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT---GDQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~---~~~~~~viiI~ttN~~~~l~ 502 (635)
+.+++..-+..+|..|+..+ |+||||||||.+++.|+.+. ++..+++-..||-.+ +.+...++|+++||.|+.||
T Consensus 206 WmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred HhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH
Confidence 77889999999999998766 79999999998887776544 677777777776665 46777899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
.++++||+..|++|+|....|..+++.++..... .+++.++.+|+.+|+||||.|
T Consensus 284 sAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------------------------~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 284 SAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------------------------VLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred HHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------------------------ccchhhHHHHHhhcCCCCcCc
Confidence 9999999999999999999999999988765433 488999999999999999999
Q ss_pred HHHHH
Q 006700 583 IAKLM 587 (635)
Q Consensus 583 I~~L~ 587 (635)
|.-++
T Consensus 339 isivV 343 (439)
T KOG0739|consen 339 ISIVV 343 (439)
T ss_pred eEEEe
Confidence 97544
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-27 Score=227.56 Aligned_cols=237 Identities=24% Similarity=0.350 Sum_probs=191.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhc-c----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATAN-T----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~-~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
-|+.+++-+-|.+...+.+...+..-.. + ..+...|.++|||||||||||++|+++|++..+.|+.++|+.+..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 3445555566677777777666553211 1 234566789999999999999999999999999999999999875
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l 501 (635)
+.+++...++++|-.++.+. |+|||+||||.+...|..+ +-+...+.....||..++ +...|+-+|++||+.+-+
T Consensus 221 ~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 77888899999999998887 7999999999998876532 224455666666777765 567899999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
||++++ |+|..|+||+|+.+.|.+|++.+-.++.. .....+..||....|.|
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl--------------------------~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAEKMPGAS 353 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--------------------------hcccCHHHHHHhCCCCc
Confidence 999998 99999999999999999999998877654 11125789999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
|+++...|..+-..+.....-.+|.+||+-++....
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999998776666666667899999999887654
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.2e-27 Score=274.99 Aligned_cols=240 Identities=26% Similarity=0.402 Sum_probs=196.4
Q ss_pred cccccCCccccChHHHHHHHHHHHHH-hcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
.|...|++++|.+.+++.|...+... ... ..+..+++++|||||||||||++|+++|..++.+|+.+.++++..
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 46678999999999999998877642 221 224467789999999999999999999999999999999988754
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcH
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 503 (635)
+.+++...++.+|..+.... |+||||||+|.+++.++..........+++.||..++ ....+++||+|||.++.+|+
T Consensus 527 ~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 66778889999999998765 7999999999999888755444556778898998886 35678999999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
++++ |||.+|+|++|+.++|..||+.++.+... .++..+..||..|+||||+
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--------------------------~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--------------------------AEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CccCCHHHHHHHcCCCCHH
Confidence 9997 99999999999999999999988765432 2334689999999999999
Q ss_pred HHHHHHHHHHHHHHcC------------------CCCccCHHHHHHHHHHHHhhh
Q 006700 582 EIAKLMASVQAAVYAR------------------PDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s------------------~~~~lt~~~i~~~l~~~~~~~ 618 (635)
||..+|..+...+... ....|+.+||..++....|..
T Consensus 660 di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 660 DIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 9999997544333220 123689999999998776643
No 21
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.9e-26 Score=247.78 Aligned_cols=237 Identities=27% Similarity=0.394 Sum_probs=190.7
Q ss_pred ccccccCCccccChHHHHHHHHHHHHH-hcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|++++|.+..++.+...+... .+. ..+..+++++|||||||||||++|+++|..++.+|+.+.++.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 457778999999999999998877542 221 223467789999999999999999999999999999988776543
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~ 500 (635)
+.+.....+..+|..+.... |+||||||+|.++..+.... .....+..+..++..++. ...+++||+|||.++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 44456667788888876554 78999999999987665322 234556677788777653 3468999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++++++ |||..|+|++|+.++|..|++.++..... ..+..+..++..|+||
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--------------------------~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--------------------------AEDVDLEAIAKMTEGA 327 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--------------------------CccCCHHHHHHHcCCC
Confidence 9999997 99999999999999999999988765433 1223578999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
||+||..+|..+-..+..++...||.+||..+++..
T Consensus 328 sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 328 SGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999987777777788899999999998763
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-27 Score=261.67 Aligned_cols=242 Identities=26% Similarity=0.390 Sum_probs=206.1
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccc-----cCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKI-----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~-----~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~ 424 (635)
...+...|.++.|.+.++..+...+........ +..++.++|||||||||||++|+++|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 457788999999999999999888776544322 457778999999999999999999999999999999999876
Q ss_pred c-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006700 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 425 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l 501 (635)
+ +.+++...+..+|..|.... ||||||||+|.+++.++.... .....+++.+|..++ +...++++|+|||.++.+
T Consensus 314 sk~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 5 78899999999999998666 799999999999998876542 233678888888885 566789999999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
|+++++ |||..++|++|+..+|..|++.++..... . ...+.++..+++.|+|||
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~------------------~------~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP------------------P------LAEDVDLEELAEITEGYS 447 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC------------------c------chhhhhHHHHHHHhcCCC
Confidence 999999 99999999999999999999999976443 0 145678999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCccCHHHHHHHHHHHHhh
Q 006700 580 GREIAKLMASVQAAVYARP-DCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~-~~~lt~~~i~~~l~~~~~~ 617 (635)
|+||..+|..+...+.... ...+|.++|..++....|.
T Consensus 448 gadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 448 GADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 9999999987776666655 6689999999999985553
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-27 Score=241.23 Aligned_cols=210 Identities=32% Similarity=0.449 Sum_probs=174.5
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhc-------ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN-------TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~-------~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~ 423 (635)
.+....|+++-|.+.+++.+..++..-.. +.. -.|+++||||||||||||++|+++|++.|.+|+.+.++.+
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~L-l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKL-LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhccccc-ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 45566899999999999999987754211 111 2578899999999999999999999999999999999988
Q ss_pred cc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCC
Q 006700 424 AP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----DQSRDIVLVLATNRP 498 (635)
Q Consensus 424 ~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~~~~~viiI~ttN~~ 498 (635)
.+ +.++....+..+|..+.+.. |+||||||+|.++..| ..+..+.....=+.|+..-+ +....|+|+++||+|
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 76 67888899999999998776 7999999999999998 44445555555555554433 333458888899999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
.++|.++++|++..++++.|+..+|.+||+.++..... -++.++..+|..|+||
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~--------------------------e~~vD~~~iA~~t~Gy 295 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL--------------------------EDDVDLDEIAQMTEGY 295 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc--------------------------CcccCHHHHHHhcCCC
Confidence 99999999999999999999999999999999977554 2445799999999999
Q ss_pred CHHHHHHHHHH
Q 006700 579 SGREIAKLMAS 589 (635)
Q Consensus 579 sgrdI~~L~~~ 589 (635)
||+||..+|..
T Consensus 296 SGSDLkelC~~ 306 (386)
T KOG0737|consen 296 SGSDLKELCRL 306 (386)
T ss_pred cHHHHHHHHHH
Confidence 99999999963
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=255.36 Aligned_cols=245 Identities=25% Similarity=0.396 Sum_probs=207.6
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.....|.+|.|.+++++.+.+++..++++. .+...|+++||+||||||||+||+++|.+.+.||+.++|+++.. +
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 456789999999999999999999988753 34567899999999999999999999999999999999999876 4
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCCC--CCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGDQ--SRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~~--~~~viiI~ttN~~~~l~ 502 (635)
.+-+...++++|..+++.. |||+||||+|++...|..+ +-...-.++||.+|..++-. +..+++|++||+|+.+|
T Consensus 224 VGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred cCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 5566778999999999877 6999999999999888532 22345557999999999743 36799999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++ |||..|.++.|+...|.+|++.++..... -.+..+..||+.|.||||
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--------------------------~~~Vdl~~iAr~tpGfsG 356 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--------------------------AEDVDLKKIARGTPGFSG 356 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--------------------------CCcCCHHHHhhhCCCccc
Confidence 99998 99999999999999999999988776544 123346669999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhccc
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 623 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~ 623 (635)
+|+.++++.+-..+..++...+|..+|.++++..+....++..
T Consensus 357 AdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 357 ADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred chHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999999866666666677899999999999998875555443
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.3e-27 Score=227.17 Aligned_cols=241 Identities=24% Similarity=0.336 Sum_probs=202.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHh-----cccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-----~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|+.++.+|-|..+..+.++..+..-- ....+..||.++|+|||||||||++|+++|+..+..|+.+.|+.+..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 4678889999999999999988776422 22456678999999999999999999999999999999999999875
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++++|..++.. +-||||+||||++.+.|-.. +.....+.....++..++ +..+|+-++++||+|+.
T Consensus 250 kyvgegarmvrelf~martk-kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTK-KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhccc-ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 7788899999999999754 47999999999998877543 334566666667777765 56789999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
|||++++ |+|..|+|.+|+.+-|..|++.+.+.+.. -.+.-++.||..|..-
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv--------------------------erdir~ellarlcpns 382 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV--------------------------ERDIRFELLARLCPNS 382 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEecccccc--------------------------ccchhHHHHHhhCCCC
Confidence 9999998 99999999999999999999988766544 2334688899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
+|++|+..|..+-..+......+.|..+|..+++..+...
T Consensus 383 tgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 383 TGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999999998777777776778899999999998877643
No 26
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=252.57 Aligned_cols=245 Identities=22% Similarity=0.328 Sum_probs=195.9
Q ss_pred CCCcccccccCCccccChHHHHHHHHHHHH-Hhcc---cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC
Q 006700 347 TAGPVEAIKNNGDIILHPSLQRRIQHLAKA-TANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (635)
Q Consensus 347 ~~~~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~---~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~ 422 (635)
...+.-|...|+||-|.++++..|.+.+.. +... ..+-.+-.+||||||||||||.+|+++|.++...|+.+.|.+
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 355667888999999999999999887654 1111 111123347999999999999999999999999999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCc-HHHHHHHHHHHHHhC---C-CCCCEEEEEEeC
Q 006700 423 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS-EAQRSALNALLFRTG---D-QSRDIVLVLATN 496 (635)
Q Consensus 423 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~-~~~~~~L~~ll~~~~---~-~~~~viiI~ttN 496 (635)
+.+ +.|+++.+++++|..|+... |||||+||+|.+.++|+..+++ ..+-++...+|.+++ + ...++.||++||
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 876 67899999999999998666 8999999999999999876554 456677888888876 2 567899999999
Q ss_pred CCCCCcHHHHc--cccceEecCCCCH-HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHH
Q 006700 497 RPGDLDSAITD--RIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573 (635)
Q Consensus 497 ~~~~l~~~l~~--R~d~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 573 (635)
+|+.|||++++ |||..+++.++.. +.+..+|+...+++.. -.+..+.+||+
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkL--------------------------dedVdL~eiAk 873 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKL--------------------------DEDVDLVEIAK 873 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccC--------------------------CCCcCHHHHHh
Confidence 99999999999 9999999988764 5667799988877765 23346888998
Q ss_pred HcC-CCCHHHHHHHHHHHHHHHHcC-----C------------CCccCHHHHHHHHHHHHhhh
Q 006700 574 KTE-GFSGREIAKLMASVQAAVYAR-----P------------DCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 574 ~t~-G~sgrdI~~L~~~~q~aa~~s-----~------------~~~lt~~~i~~~l~~~~~~~ 618 (635)
+|. .|||+|+-.||..+..+|..+ + .-+++.+||.++++.+.|+-
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 874 799999999995443333221 1 12689999999999988754
No 27
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3e-26 Score=248.11 Aligned_cols=212 Identities=26% Similarity=0.415 Sum_probs=180.5
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcc-----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chh
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 428 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~-----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~ 428 (635)
..|+++-|..++++.|.+.+..-... ..+-+...+||||||||||||++|-++|..++..|+.+.|.++.. +.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 67899999999999999988753321 122233458999999999999999999999999999999999765 778
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcHHHH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAIT 506 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~~l~ 506 (635)
.++..++.+|..|...+ |||||+||+|.+.++|+-.. +...-++.|.||..++ +.-.++.|+++|.+|+.+||+++
T Consensus 744 aSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred ccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 88999999999997655 89999999999999987544 3445678999999987 44567899999999999999999
Q ss_pred c--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHH
Q 006700 507 D--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 584 (635)
Q Consensus 507 ~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 584 (635)
+ |+|..|+.++|+..+|.+|++...+.... -++.+++.+|.+|+||||+||.
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~--------------------------~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLK--------------------------DTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCC--------------------------ccccchHHHhhhcCCCchhhHH
Confidence 8 99999999999999999999988766544 4667899999999999999999
Q ss_pred HHHHHHHHHH
Q 006700 585 KLMASVQAAV 594 (635)
Q Consensus 585 ~L~~~~q~aa 594 (635)
.|+-.++.++
T Consensus 876 ~ll~~A~l~a 885 (952)
T KOG0735|consen 876 SLLYNAQLAA 885 (952)
T ss_pred HHHHHHHHHH
Confidence 9997666554
No 28
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-26 Score=220.40 Aligned_cols=239 Identities=24% Similarity=0.338 Sum_probs=196.2
Q ss_pred ccccccCCccccChHHHHHHHHHHHHH-----hcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~-----~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...+.++-|.+...+.|...+-.. +.-..+..||+++|+|||||||||++|++.|...+..|..+-|..+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 467788899999887776665543321 112446689999999999999999999999999999999999988776
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++..-++..|..++... |+||||||+|.+..+|..+. -....+.....||..++ .....+-||++||+.+-
T Consensus 244 MfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 56788888999999998655 79999999999998876532 13455666666777765 34557899999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
|||++++ |+|..|+||.|+.+.|.+|++.+..++.. -+|..+++|++.|++|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--------------------------~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--------------------------SDDVNFEELARSTDDF 376 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--------------------------CCCCCHHHHhhccccc
Confidence 9999998 99999999999999999999998877654 3556799999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+|++....|..+-.++...+...++-++|...+-....
T Consensus 377 NGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred CchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 99999999988888888888888999998887766543
No 29
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-25 Score=252.06 Aligned_cols=235 Identities=19% Similarity=0.284 Sum_probs=182.1
Q ss_pred cccchhheehhhhhhhhhhhhccCccchhhHHHHHHhCCCCccccccCCCCCCcchhHHHHHHHhhhccCCCCCCccccc
Q 006700 275 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 354 (635)
Q Consensus 275 d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg~p~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (635)
+++.+..+|..||+++++. +...+.++++..+..+.
T Consensus 455 ~~~~Ia~vv~~~TgIPv~~--------l~~~e~~kll~le~~L~------------------------------------ 490 (786)
T COG0542 455 DEDDIAEVVARWTGIPVAK--------LLEDEKEKLLNLERRLK------------------------------------ 490 (786)
T ss_pred CHHHHHHHHHHHHCCChhh--------hchhhHHHHHHHHHHHh------------------------------------
Confidence 6677777788888776654 44455555553333222
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcc-cccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeecc-----------
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMT----------- 419 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~-~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~----------- 419 (635)
..||||+++...+.+.++..+.+ ..+++|..+|||.||+|+|||.+|++||..+. ..++.++
T Consensus 491 ---~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 ---KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred ---cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 78999999999999988887776 45668889999999999999999999999995 4455544
Q ss_pred ---CCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------C
Q 006700 420 ---GGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------Q 485 (635)
Q Consensus 420 ---~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~ 485 (635)
|++.+++|++..+.+++.+ +.+||+||+||||+ +++.+++|.||+.+++ +
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaV----Rr~PySViLlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAV----RRKPYSVILLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHhCCCCCCceeccccchhHhh----hcCCCeEEEechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 5555667777666655554 88899999999998 5778999999999874 5
Q ss_pred CCCEEEEEEeCCCC----------------------------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCC
Q 006700 486 SRDIVLVLATNRPG----------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 537 (635)
Q Consensus 486 ~~~viiI~ttN~~~----------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~ 537 (635)
++|++||||||... .+.|+|++|+|.+|.|.+.+.+...+|+..++.+...
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~- 710 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAK- 710 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHH-
Confidence 67999999999531 2679999999999999999999999999999988764
Q ss_pred CCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCCHHHHHHHHH
Q 006700 538 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMA 588 (635)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~ 588 (635)
.+..+...+. +++++.++|+..+. .|.+|-|+.++.
T Consensus 711 ------------~L~~~~i~l~---~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 711 ------------RLAERGITLE---LSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred ------------HHHhCCceEE---ECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 4443333443 89999999998854 455667766653
No 30
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-26 Score=226.42 Aligned_cols=242 Identities=23% Similarity=0.344 Sum_probs=197.3
Q ss_pred CCcccccccCCccccChHHHHHHHHHHHHHh-cc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC
Q 006700 348 AGPVEAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (635)
Q Consensus 348 ~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~ 422 (635)
+.-..|..+|.++-|.++..+.+...+..-- ++ .-+..||.+++|||+||||||+||+++|+.....|+.+.|++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 3345678889999998888887776554311 11 234578999999999999999999999999999999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCC
Q 006700 423 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNR 497 (635)
Q Consensus 423 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~ 497 (635)
+.. +.+++..-++++|..|.... |+|+||||||++..+|-+.+ -....++.+..||..++ +..+++-||++||.
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 875 77788899999999998777 79999999999998875432 23455566667777775 55678999999999
Q ss_pred CCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006700 498 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 575 (635)
Q Consensus 498 ~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 575 (635)
.+.|||++++ |+|..|+|+.|+...+..|+..+..++.. -.+..++.+...-
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl--------------------------~~dVnle~li~~k 387 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL--------------------------AEDVNLEELIMTK 387 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccch--------------------------hccccHHHHhhcc
Confidence 9999999998 99999999999999999999887766544 2334577777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 576 EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 576 ~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+.+||+||..+|..+-..+.....-.+|.+||.++.+....
T Consensus 388 ddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 388 DDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred cccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 89999999999988777777766678999999999888765
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=3.7e-25 Score=252.73 Aligned_cols=238 Identities=25% Similarity=0.371 Sum_probs=194.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.....|.++.|.+..+..+.+++...... ..+...++++||+||||||||+++++++..++.+|+.++++++.. +
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34567899999999999999988765542 223345678999999999999999999999999999999987654 3
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l~ 502 (635)
.+.....+..+|..+.... ||||||||+|.+...+... +.......+++.+|..++. ...+++||+|||.++.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 3455667888898886554 7999999999998877542 2334556789999888863 345799999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++ |||..|.|++|+.++|.+||+.++.+... ..+..+..++..|.||||
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l--------------------------~~~~d~~~la~~t~G~sg 358 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--------------------------APDIDAAIIARGTPGFSG 358 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC--------------------------CCcCCHHHHHhhCCCCCH
Confidence 99997 99999999999999999999999876543 122346779999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+||.++|+.+...+...+...||..++..+++....
T Consensus 359 adl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 359 ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 999999987777666667789999999999886654
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=1.2e-24 Score=238.42 Aligned_cols=252 Identities=20% Similarity=0.272 Sum_probs=184.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHHH-hc----ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC----------e
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-AN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------Y 415 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------~ 415 (635)
..|...|++|.|.+..++.+...+... .. ...+..|++++|||||||||||++|+++|+.++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457788999999999999998876532 22 12344678899999999999999999999998654 3
Q ss_pred eeccCCCcc-cchhhHHHHHHHHHHHHhhc---CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCE
Q 006700 416 AMMTGGDVA-PLGAQAVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDI 489 (635)
Q Consensus 416 ~~l~~~~~~-~~~~~~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~--~~~~v 489 (635)
+.+.++++. .+.++....+..+|..+... ..++||||||+|.++++++....+.....+++.||..++. ...++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 444555543 35567777888899887653 3589999999999998876544444556778888888763 33689
Q ss_pred EEEEEeCCCCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 490 VLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+||+|||+++.||+++++ |||..|+|++|+.++|..||+.++..... ... .+.. ..+.+...
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~-l~~---------~l~~------~~g~~~a~ 398 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP-LDA---------DLAE------FDGDREAT 398 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC-chH---------HHHH------hcCCCHHH
Confidence 999999999999999998 99999999999999999999999875322 000 0000 00111111
Q ss_pred HHHH-----------------------------HHHcCCCCHHHHHHHHHHHHHHHHc----CCCCccCHHHHHHHHHHH
Q 006700 568 IQEA-----------------------------ARKTEGFSGREIAKLMASVQAAVYA----RPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 568 l~~l-----------------------------a~~t~G~sgrdI~~L~~~~q~aa~~----s~~~~lt~~~i~~~l~~~ 614 (635)
+..+ ...++.+||+.|.++|..+...+.. .....|+.+++..++..-
T Consensus 399 ~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 399 AAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 1111 2235679999999999877766553 244679999999999887
Q ss_pred Hhhh
Q 006700 615 VEEH 618 (635)
Q Consensus 615 ~~~~ 618 (635)
..++
T Consensus 479 ~~~~ 482 (512)
T TIGR03689 479 FRES 482 (512)
T ss_pred hccc
Confidence 7654
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=1.3e-24 Score=257.31 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=162.8
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccc-------------------------------------
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL------------------------------------- 426 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~------------------------------------- 426 (635)
..|++||||+||||||||+||++||.+++.||+.++++++...
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3578899999999999999999999999999999988776521
Q ss_pred -----hhhHHH--HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----CCCCEEEEEE
Q 006700 427 -----GAQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----QSRDIVLVLA 494 (635)
Q Consensus 427 -----~~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----~~~~viiI~t 494 (635)
.+...+ .++.+|+.|+... ||||||||||.+..+.. ....++.|+..++. ...+|+||+|
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 011222 3788999998876 79999999999975411 11236677766652 3467999999
Q ss_pred eCCCCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHH
Q 006700 495 TNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 572 (635)
Q Consensus 495 tN~~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 572 (635)
||+|+.|||++++ |||..|.++.|+..+|.+++...+..... .+. -+...+..+|
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~----------------------~L~-~~~vdl~~LA 1835 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGF----------------------HLE-KKMFHTNGFG 1835 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCC----------------------CCC-cccccHHHHH
Confidence 9999999999998 99999999999999999988755422111 000 1112478899
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhc
Q 006700 573 RKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 621 (635)
Q Consensus 573 ~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~ 621 (635)
..|.||||+||..||+.+-..+...+...|+.++++.|++..+.....+
T Consensus 1836 ~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1836 SITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999877777777888999999999999988765444
No 34
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.92 E-value=1.1e-22 Score=238.67 Aligned_cols=354 Identities=17% Similarity=0.192 Sum_probs=228.1
Q ss_pred HHHHhHHHHHHHHHHHHhcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006700 155 DELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKL 234 (635)
Q Consensus 155 d~l~r~~~q~e~e~~~~~~e~~~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~k~~~E~~~~~~~~~~ 234 (635)
+.++++..+++.|.+.+.++............++++ .+++.++..++.+|+.++.++....+....+++++.+++....
T Consensus 413 ~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l-~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~ 491 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEEL-SDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR 491 (857)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888877776654322222223333444 4566678889999999999988877777777777777777777
Q ss_pred hcchhHHH-HHhhhhhhHHHHHHHHhhhhccccccceeecccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhCC
Q 006700 235 TEDHNRRM-LIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQ 313 (635)
Q Consensus 235 ~~d~~~~~-l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg~ 313 (635)
+.|..... +++...++....+..+..........+. ...+.+.+..+|+.||+++++ ++..++.+++++.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~i~~vv~~~tgip~~--------~~~~~~~~~l~~l 562 (857)
T PRK10865 492 VGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLR-NKVTDAEIAEVLARWTGIPVS--------RMLESEREKLLRM 562 (857)
T ss_pred hhhhhhHHHhhhhhhHHHHHHHHHHHhhhcccccccc-CccCHHHHHHHHHHHHCCCch--------hhhhhHHHHHHHH
Confidence 77765443 4444433434444443322110011111 123455666666666666554 4555555554321
Q ss_pred CCccccccCCCCCCcchhHHHHHHHhhhccCCCCCCcccccccCCccccChHHHHHHHHHHHHHhccc-ccCCCCceEEE
Q 006700 314 PSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLF 392 (635)
Q Consensus 314 p~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL 392 (635)
.. ..+..|+|++.+...|...+.....+. .+..|..++||
T Consensus 563 ~~---------------------------------------~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf 603 (857)
T PRK10865 563 EQ---------------------------------------ELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLF 603 (857)
T ss_pred HH---------------------------------------HhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEE
Confidence 11 123789999999999988887766443 33456668999
Q ss_pred ecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------------chhhHHHHHHHHHHHHhhcCCcEEEEecCc
Q 006700 393 YGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEA 455 (635)
Q Consensus 393 ~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--------------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEi 455 (635)
+||||||||++|++||..+ +.+++.++++.+.. .+.+. .+.+..+.+..+++||||||+
T Consensus 604 ~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~----~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 604 LGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE----GGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred ECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch----hHHHHHHHHhCCCCeEEEeeh
Confidence 9999999999999999987 35677777766432 11111 123344445667899999999
Q ss_pred hhhhhhcccccCcHHHHHHHHHHHHHh---C-----CCCCCEEEEEEeCCC-------------------------CCCc
Q 006700 456 DAFLCERNSIHMSEAQRSALNALLFRT---G-----DQSRDIVLVLATNRP-------------------------GDLD 502 (635)
Q Consensus 456 d~l~~~r~~~~~~~~~~~~L~~ll~~~---~-----~~~~~viiI~ttN~~-------------------------~~l~ 502 (635)
+.+ +...+..|..++..- + -++++++||+|||.. ..+.
T Consensus 680 eka---------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 680 EKA---------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred hhC---------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 976 233444444444221 0 124677899999973 1367
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC---
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS--- 579 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s--- 579 (635)
|+|++|+|.++.|.+++.++...|+..++..... .+.. .++.+ .++++++..|+.. ||+
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~-------------rl~~--~gi~l-~is~~al~~L~~~--gy~~~~ 812 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYK-------------RLEE--RGYEI-HISDEALKLLSEN--GYDPVY 812 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHH-------------HHHh--CCCcC-cCCHHHHHHHHHc--CCCccC
Confidence 8999999999999999999999999999987543 1211 12333 4899999999976 554
Q ss_pred -HHHHHHHHH
Q 006700 580 -GREIAKLMA 588 (635)
Q Consensus 580 -grdI~~L~~ 588 (635)
.|.|+.++.
T Consensus 813 GARpL~r~I~ 822 (857)
T PRK10865 813 GARPLKRAIQ 822 (857)
T ss_pred ChHHHHHHHH
Confidence 577877764
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.91 E-value=2.4e-23 Score=215.35 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=125.9
Q ss_pred ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chhhHHHHHHHHHHHHhh----cCCcEEEEecCch
Q 006700 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKK----SKKGLLLFIDEAD 456 (635)
Q Consensus 382 ~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~~~~~~l~~~f~~a~~----~~~~~vL~iDEid 456 (635)
.+..+|++++||||||||||++|+++|.++|.+++.++++++.+ +.++++..++++|..|.. ...||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 34578899999999999999999999999999999999998864 888999999999998874 3468999999999
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHhC--------------CCCCCEEEEEEeCCCCCCcHHHHc--cccceEecCCCCH
Q 006700 457 AFLCERNSIHMSEAQRSALNALLFRTG--------------DQSRDIVLVLATNRPGDLDSAITD--RIDEVIEFPLPRE 520 (635)
Q Consensus 457 ~l~~~r~~~~~~~~~~~~L~~ll~~~~--------------~~~~~viiI~ttN~~~~l~~~l~~--R~d~~i~~~~p~~ 520 (635)
.+++.+++.......+-+...|+..++ +...+++||+|||.|+.|+++|++ |||..+ ..|+.
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 999988754323333444456666543 235679999999999999999999 999864 58999
Q ss_pred HHHHHHHHHHHHhh
Q 006700 521 EERFKLLKLYLKKY 534 (635)
Q Consensus 521 ~er~~Il~~~l~~~ 534 (635)
++|..||+.++...
T Consensus 301 e~R~eIL~~~~r~~ 314 (413)
T PLN00020 301 EDRIGVVHGIFRDD 314 (413)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999988764
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=222.08 Aligned_cols=239 Identities=26% Similarity=0.347 Sum_probs=187.9
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhc----ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|+++.|...+++.+..++..... ...-..|++++||.||||||||+|+++||.+++..|+.++.+.+.. +
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 4556889999999999999887765332 1222367789999999999999999999999999999999998875 6
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHH-HHHHh---CCCCCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNA-LLFRT---GDQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~-ll~~~---~~~~~~viiI~ttN~~~~l~ 502 (635)
.|+....++.+|..|+... |+|+||||+|.++.+|.... .+..+..... +++.. .....+|+||+|||.|+.+|
T Consensus 227 ~Ge~eK~vralf~vAr~~q-PsvifidEidslls~Rs~~e-~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKRSDNE-HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred cChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhcCCcc-cccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 7778899999999987655 89999999999999985433 2333333333 33332 23455899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
.++++||...++||+|+.+.|..+|..++.+... .+.+.++..|++.|+||||.|
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------------------------~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------------------------GLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------------------------CccHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999987632 378889999999999999999
Q ss_pred HHHHHHHHHHH-----------HHc--CCCCccCHHHHHHHHHHHHhh
Q 006700 583 IAKLMASVQAA-----------VYA--RPDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 583 I~~L~~~~q~a-----------a~~--s~~~~lt~~~i~~~l~~~~~~ 617 (635)
|..+|..+... .+. ..-..++..++..+++...+.
T Consensus 360 i~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 360 ITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred HHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 99999644321 111 112356777777777766653
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.2e-22 Score=218.64 Aligned_cols=233 Identities=27% Similarity=0.404 Sum_probs=189.8
Q ss_pred CccccChHHHHHHHHHHHHHhc-----ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-cchhhHH
Q 006700 358 GDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAV 431 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~-----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~~~~~~~ 431 (635)
..+.|.......++.++..... ...+..|++++|+|||||||||.+++++|++.+..++.++|+.+. .+.+++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 3556666666666665543221 234457889999999999999999999999999999999999765 4788999
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCcHHHHc-c
Q 006700 432 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAITD-R 508 (635)
Q Consensus 432 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l~~~l~~-R 508 (635)
.+++..|..+.....|++|||||+|.+.+++..... ....+...++..++- ...++++|.+||+|+.||+++++ |
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCC
Confidence 999999999998887899999999999998876553 334444555544442 34789999999999999999997 9
Q ss_pred ccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 006700 509 IDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMA 588 (635)
Q Consensus 509 ~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~ 588 (635)
||..+.+..|+...|.+|++.+++.+.. .++..+..++..|.||.|+|+..+|.
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~--------------------------~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNL--------------------------LSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCC--------------------------cchhhHHHHHHHccchhHHHHHHHHH
Confidence 9999999999999999999999988765 46788999999999999999999998
Q ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhccc
Q 006700 589 SVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 623 (635)
Q Consensus 589 ~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~ 623 (635)
.+...+... |.++|..+.....|...+.+-
T Consensus 396 ea~~~~~r~-----~~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 396 EASLQATRR-----TLEIFQEALMGIRPSALREIL 425 (693)
T ss_pred HHHHHHhhh-----hHHHHHHHHhcCCchhhhhee
Confidence 665555443 778888888888777766654
No 38
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.89 E-value=4.3e-21 Score=226.19 Aligned_cols=354 Identities=18% Similarity=0.208 Sum_probs=216.6
Q ss_pred HHHHhHHHHHHHHHHHHhcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006700 155 DELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKL 234 (635)
Q Consensus 155 d~l~r~~~q~e~e~~~~~~e~~~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~k~~~E~~~~~~~~~~ 234 (635)
+.+++++.+++.+.+++.++.............+++ .+++.++..+...|..++..++........+...+........
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (852)
T TIGR03346 408 DELDRRIIQLEIEREALKKEKDEASKERLEDLEKEL-AELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAER 486 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777775543221112222222333 4566777888888988888777766666555544444444444
Q ss_pred hcchhHHH-HHhhhhhhHHHHHHHHhhhhcc-ccccceeecccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhC
Q 006700 235 TEDHNRRM-LIERINGEREKWLAAINTTFSH-IEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILG 312 (635)
Q Consensus 235 ~~d~~~~~-l~~~~~~~~~~~l~~i~~~~~~-~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg 312 (635)
+.|+.... +......+....+..+...... .+..+.....+++.+..+++.||+++++ .+..+..+++.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~--------~~~~~e~~~l~~ 558 (852)
T TIGR03346 487 EGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVS--------KMLEGEREKLLH 558 (852)
T ss_pred hhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcc--------cccHHHHHHHHH
Confidence 44433322 3332222333333332221111 0111111223556666666666665444 444555554431
Q ss_pred CCCccccccCCCCCCcchhHHHHHHHhhhccCCCCCCcccccccCCccccChHHHHHHHHHHHHHhccc-ccCCCCceEE
Q 006700 313 QPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNML 391 (635)
Q Consensus 313 ~p~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iL 391 (635)
.... -...|+|++.+...|...+.....+. .+..|..++|
T Consensus 559 l~~~---------------------------------------l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~L 599 (852)
T TIGR03346 559 MEEV---------------------------------------LHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFL 599 (852)
T ss_pred HHHH---------------------------------------hhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEE
Confidence 1110 11679999999999998887766543 3446677899
Q ss_pred EecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------------chhhHHHHHHHHHHHHhhcCCcEEEEecC
Q 006700 392 FYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDE 454 (635)
Q Consensus 392 L~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--------------~~~~~~~~l~~~f~~a~~~~~~~vL~iDE 454 (635)
|+||||||||++|++||..+ +.+++.++++.+.. +|.+..+ .+..+.+..+++||||||
T Consensus 600 f~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g----~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGG----QLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccccc----HHHHHHHcCCCcEEEEec
Confidence 99999999999999999987 45778777765422 1111122 233333556789999999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC------------------------
Q 006700 455 ADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVLVLATNRPG------------------------ 499 (635)
Q Consensus 455 id~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~viiI~ttN~~~------------------------ 499 (635)
|+.+ + ..+.+.|++.+++ ++++++||+|||...
T Consensus 676 ieka---------~---~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (852)
T TIGR03346 676 VEKA---------H---PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLR 743 (852)
T ss_pred cccC---------C---HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHH
Confidence 9976 2 3445555555432 256889999999732
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE-- 576 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~-- 576 (635)
.+.|+|++|||.++.|.+++.++..+|+..++..... .+... ++.+ .+++++++.|+....
T Consensus 744 ~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~-------------~l~~~--~~~l-~i~~~a~~~L~~~~~~~ 807 (852)
T TIGR03346 744 AHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRK-------------RLAER--KITL-ELSDAALDFLAEAGYDP 807 (852)
T ss_pred hhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHH-------------HHHHC--CCee-cCCHHHHHHHHHhCCCC
Confidence 2568999999999999999999999999998876432 22211 2222 389999999998732
Q ss_pred CCCHHHHHHHHH
Q 006700 577 GFSGREIAKLMA 588 (635)
Q Consensus 577 G~sgrdI~~L~~ 588 (635)
.+..|.|+.++.
T Consensus 808 ~~gaR~L~~~i~ 819 (852)
T TIGR03346 808 VYGARPLKRAIQ 819 (852)
T ss_pred CCCchhHHHHHH
Confidence 445677776664
No 39
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=3.2e-22 Score=233.17 Aligned_cols=241 Identities=24% Similarity=0.398 Sum_probs=186.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhc-c----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATAN-T----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~-~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
.+..+|++|+|.+..++.+..++..... . ..+..+++++|||||||||||++++++|+.++.+|+.+++.++..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3567899999999999999888764322 1 233467789999999999999999999999999999999887654
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCcH
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l~~ 503 (635)
+.+.....+..+|..+.... |+||||||+|.+.+.++... ......+++.|+..++. ....++||++||.++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 45566778899999887655 68999999999988765432 22334556666666642 3457889999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
++.+ ||+..+.|++|+.++|..||+.++..... ..+..+..++..|.||+++
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--------------------------~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--------------------------AEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------ccccCHHHHHHhCCCCCHH
Confidence 9987 99999999999999999999977654432 2344688999999999999
Q ss_pred HHHHHHHHHHHHHHcC-------------------CCCccCHHHHHHHHHHHHhhhhh
Q 006700 582 EIAKLMASVQAAVYAR-------------------PDCVLDSQLFREVVEYKVEEHHQ 620 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s-------------------~~~~lt~~~i~~~l~~~~~~~~~ 620 (635)
||..++..+...+... ....++.+++..++....|...+
T Consensus 384 dl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 384 DLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccc
Confidence 9999986544333211 12357888999998877765543
No 40
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8e-23 Score=203.83 Aligned_cols=232 Identities=23% Similarity=0.377 Sum_probs=176.7
Q ss_pred ccCCccccChHHHHHHHHHHH-HHhc----ccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chh
Q 006700 355 KNNGDIILHPSLQRRIQHLAK-ATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 428 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~-~~~~----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~ 428 (635)
.+|+++-|.-.....+.+.+. .+.+ .+.+..||.+++||||||||||++|++++..+|.+|+.+..+.+.+ +.+
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 478888888887777776443 2222 3446789999999999999999999999999999999998888764 778
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcHH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 504 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~~ 504 (635)
+....+++.|..|.... +||||+||||+..+.+.+.+ .....+.+|-.|+..++ +....|-+|+|+|.|+.|+|+
T Consensus 209 EsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred cHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 89999999999998877 69999999999988875433 23456677777777775 455689999999999999999
Q ss_pred HHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 505 ITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 505 l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++ |+|..+.+|.|+...|..|++........ ...-..+.+.+.++||+|.|
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~--------------------------~Geid~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF--------------------------HGEIDDEAILKLVDGFNGAD 341 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccc--------------------------cccccHHHHHHHHhccChHH
Confidence 998 99999999999999988876655433221 22223677788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 583 IAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 583 I~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+++.|..+-..+.......+-.+++..++..
T Consensus 342 ~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 342 LRNVCTEAGMFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred HhhhcccccccccchhhHHHhHHHHHHHHHH
Confidence 9988864433232223333444555555443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.3e-21 Score=202.38 Aligned_cols=215 Identities=26% Similarity=0.362 Sum_probs=166.3
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+.+|+++|||+++...-.-+-+.+..+ ...+++|||||||||||+|+.||...+.+|..++... .+...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~-----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAG-----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------SGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcC-----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------ccHHH
Confidence 567899999999885533333333333 3348999999999999999999999999999988754 55678
Q ss_pred HHHHHHHHhhcC---CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCcHHHHcc
Q 006700 434 IHEIFDWAKKSK---KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAITDR 508 (635)
Q Consensus 434 l~~~f~~a~~~~---~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt--N~~~~l~~~l~~R 508 (635)
++.+++.+.... +..|||||||++| ++.+++.|...+ ..+.+++|++| |+.-.++++++||
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRf---------nK~QQD~lLp~v-----E~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRF---------NKAQQDALLPHV-----ENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhc---------Chhhhhhhhhhh-----cCCeEEEEeccCCCCCeeecHHHhhh
Confidence 888888885433 3689999999998 466777776666 46778888866 5666899999999
Q ss_pred ccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 006700 509 IDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMA 588 (635)
Q Consensus 509 ~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~ 588 (635)
+ .++.|.+.+.++...++..-+..... ...-....+++++++.|+..+.| |.+.+++
T Consensus 155 ~-~vf~lk~L~~~di~~~l~ra~~~~~r------------------gl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 155 A-RVFELKPLSSEDIKKLLKRALLDEER------------------GLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred h-heeeeecCCHHHHHHHHHHHHhhhhc------------------CCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 9 99999999999999999984433222 00101113789999999999989 9999999
Q ss_pred HHHHHHHcCCC-CccCHHHHHHHHHHHHh
Q 006700 589 SVQAAVYARPD-CVLDSQLFREVVEYKVE 616 (635)
Q Consensus 589 ~~q~aa~~s~~-~~lt~~~i~~~l~~~~~ 616 (635)
.++.++..... ..++.+++.+++.....
T Consensus 212 ~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 212 LLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 99999887533 35668889888887665
No 42
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.3e-23 Score=215.31 Aligned_cols=247 Identities=23% Similarity=0.338 Sum_probs=189.6
Q ss_pred CCcccccccCCcc--ccCh-HHHHHHHHHH-HHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCC-Ceeec
Q 006700 348 AGPVEAIKNNGDI--ILHP-SLQRRIQHLA-KATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-DYAMM 418 (635)
Q Consensus 348 ~~~~~~~~~~~~v--ig~~-~~~~~l~~l~-~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-~~~~l 418 (635)
.....|.-.|+++ -|.+ +.-..+++.- ..+..+ +.+....+++|||||||||||++||.|...++. +--.+
T Consensus 209 n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV 288 (744)
T KOG0741|consen 209 NSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV 288 (744)
T ss_pred ccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc
Confidence 3445777778775 2332 2222232211 111111 223344578999999999999999999999964 56678
Q ss_pred cCCCccc-chhhHHHHHHHHHHHHhhc-------CCcEEEEecCchhhhhhcccc-cCcHHHHHHHHHHHHHhC--CCCC
Q 006700 419 TGGDVAP-LGAQAVTKIHEIFDWAKKS-------KKGLLLFIDEADAFLCERNSI-HMSEAQRSALNALLFRTG--DQSR 487 (635)
Q Consensus 419 ~~~~~~~-~~~~~~~~l~~~f~~a~~~-------~~~~vL~iDEid~l~~~r~~~-~~~~~~~~~L~~ll~~~~--~~~~ 487 (635)
+|+.+.+ +.++++.+++.+|..|... ..-.||++||||+++..|++. +.+..+-.++|.||..++ +.-.
T Consensus 289 NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN 368 (744)
T KOG0741|consen 289 NGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN 368 (744)
T ss_pred CcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh
Confidence 8888765 7889999999999887531 112589999999999998864 336677889999999987 5677
Q ss_pred CEEEEEEeCCCCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 488 DIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 488 ~viiI~ttN~~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
|++||..||+.+.+|.++++ ||...+++.+|++.-|.+|++.+.+++.. ...+ -+|
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre------------------~~~l----~~d 426 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE------------------NNKL----SAD 426 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh------------------cCCC----CCC
Confidence 99999999999999999999 99999999999999999999998877654 1111 355
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC---------------CCccCHHHHHHHHHHHHh
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYARP---------------DCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~---------------~~~lt~~~i~~~l~~~~~ 616 (635)
.++.+||..|..|||++|..|+.+++..|..+. .-.+|.+||..++++..|
T Consensus 427 Vdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 427 VDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred cCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 679999999999999999999999998887641 125789999999998776
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.87 E-value=2e-20 Score=219.00 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=143.0
Q ss_pred CccccChHHHHHHHHHHHHHhccc-ccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc----------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV---------- 423 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~---------- 423 (635)
..|+||+.+...+...+.....+. .+..|...+||+||||||||++|++||..+ ...++.++++.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 789999999999988887765543 344566679999999999999999999998 345666665543
Q ss_pred ----ccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC-----------CCC
Q 006700 424 ----APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-----------SRD 488 (635)
Q Consensus 424 ----~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~-----------~~~ 488 (635)
+++|....+.+. .+.+..+++||+||||+.+ +..+++.|++.+++. +.+
T Consensus 646 g~~~gyvg~~~~g~L~----~~v~~~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLT----EAVRRKPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred CCCCCcccccccchHH----HHHHhCCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 122322223333 3335577999999999865 345666666666532 478
Q ss_pred EEEEEEeCCCC-----------------------------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCC
Q 006700 489 IVLVLATNRPG-----------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDE 539 (635)
Q Consensus 489 viiI~ttN~~~-----------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 539 (635)
++||+|||... .|.|+|++|++ +|.|.+++.++..+|+...+.....
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~--- 785 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIAR--- 785 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHH---
Confidence 99999999521 26799999996 8999999999999999999877543
Q ss_pred CCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC--CCHHHHHHHHH
Q 006700 540 GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG--FSGREIAKLMA 588 (635)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G--~sgrdI~~L~~ 588 (635)
.+..+ .++.+. +++++++.|+..+.+ |..|.|+.++.
T Consensus 786 ----------rl~~~-~gi~l~-i~d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 786 ----------RLKEN-HGAELV-YSEALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred ----------HHHHh-cCceEE-ECHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 11111 123332 899999999988543 45677777664
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=2.2e-21 Score=189.11 Aligned_cols=191 Identities=29% Similarity=0.453 Sum_probs=132.0
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+..|+++|||++++..+.-++..... .+.++.|+||||||||||||||+.||++++.+|..++++.+... ..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~---r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-----~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK---RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-----GD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC---TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-----HH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh---cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-----HH
Confidence 45889999999999998877766542 23456689999999999999999999999999998888543321 23
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh------CCC---------CCCEEEEEEeCCC
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT------GDQ---------SRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~------~~~---------~~~viiI~ttN~~ 498 (635)
+..++.. ..++.|||||||+.| +..++++|...+... +.. -.+|.+|++|+..
T Consensus 92 l~~il~~---l~~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~ 159 (233)
T PF05496_consen 92 LAAILTN---LKEGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA 159 (233)
T ss_dssp HHHHHHT-----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred HHHHHHh---cCCCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence 3333332 235789999999998 467777777776542 111 1368999999999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
..+.+.+++||..+..+..++.++..+|+......+.. .++++...+||.++.|
T Consensus 160 g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-------------------------~i~~~~~~~Ia~rsrG- 213 (233)
T PF05496_consen 160 GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-------------------------EIDEDAAEEIARRSRG- 213 (233)
T ss_dssp CCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--------------------------EE-HHHHHHHHHCTTT-
T ss_pred cccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-------------------------CcCHHHHHHHHHhcCC-
Confidence 99999999999888899999999999999876554433 3889999999999999
Q ss_pred CHHHHHHHHHHH
Q 006700 579 SGREIAKLMASV 590 (635)
Q Consensus 579 sgrdI~~L~~~~ 590 (635)
++|-...|+..+
T Consensus 214 tPRiAnrll~rv 225 (233)
T PF05496_consen 214 TPRIANRLLRRV 225 (233)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 777666666544
No 45
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=3e-21 Score=207.54 Aligned_cols=308 Identities=19% Similarity=0.257 Sum_probs=236.8
Q ss_pred hcchhHHHHHhhhhhhHHHHHHHHhhhhccccccceeecccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhCCC
Q 006700 235 TEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQP 314 (635)
Q Consensus 235 ~~d~~~~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg~p 314 (635)
..|+.+-+++++ ..++...++.++.. +|+..++++++...+..+|...+.|+ ++|+.|++..+
T Consensus 48 ~~~lvl~Di~mp-~~~Gl~ll~~i~~~-------------~~~~pVI~~Tg~g~i~~AV~A~k~GA---~Dfl~KP~~~~ 110 (464)
T COG2204 48 PFDLVLLDIRMP-GMDGLELLKEIKSR-------------DPDLPVIVMTGHGDIDTAVEALRLGA---FDFLEKPFDLD 110 (464)
T ss_pred CCCEEEEecCCC-CCchHHHHHHHHhh-------------CCCCCEEEEeCCCCHHHHHHHHhcCc---ceeeeCCCCHH
Confidence 678889998888 45788888888876 67788888899999999999999998 89999998776
Q ss_pred CccccccCCCCCCcchhHHHHHHHhhhccCCCCCCcccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEec
Q 006700 315 SLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYG 394 (635)
Q Consensus 315 ~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~G 394 (635)
.++. .+.+++.......... .........+..+||.+..++.|...+..+..+..+ |||+|
T Consensus 111 ~L~~-----------~v~ral~~~~~~~e~~--~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~------VLI~G 171 (464)
T COG2204 111 RLLA-----------IVERALELRELQRENR--RSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDAS------VLITG 171 (464)
T ss_pred HHHH-----------HHHHHHHHhhhhhhhh--hhhhccccccCCceecCHHHHHHHHHHHHHhCCCCC------EEEEC
Confidence 6665 4555554321111110 011222346789999999999999999998887775 99999
Q ss_pred CCCCChHHHHHHHHHHhC---CCeeeccCCCccc--chhhHHHHHHHHHHHHhhcC-------CcEEEEecCchhhhhhc
Q 006700 395 PPGTGKTMVAREIARKSG---LDYAMMTGGDVAP--LGAQAVTKIHEIFDWAKKSK-------KGLLLFIDEADAFLCER 462 (635)
Q Consensus 395 ppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~--~~~~~~~~l~~~f~~a~~~~-------~~~vL~iDEid~l~~~r 462 (635)
++||||.++|++|+..+. .||+.+||+.+.. +..+.+++-.+.|+.|...+ .++.||||||..|
T Consensus 172 ESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m---- 247 (464)
T COG2204 172 ESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM---- 247 (464)
T ss_pred CCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC----
Confidence 999999999999999984 5999999999876 34455565566666555433 4678999999876
Q ss_pred ccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH--
Q 006700 463 NSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK-- 525 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~-- 525 (635)
+-..+..|..+|+.-. ....++.||++||.. ..|.+.+.-|+ .++.+..|...||.+
T Consensus 248 -----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDI 321 (464)
T COG2204 248 -----PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDI 321 (464)
T ss_pred -----CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhH
Confidence 5677777777776522 234579999999963 46788888899 899999999887776
Q ss_pred --HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccC
Q 006700 526 --LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLD 603 (635)
Q Consensus 526 --Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt 603 (635)
|+.+|+.+... ..+.....++++++..|..+ .|.| +++.|-|.++.++..+....|+
T Consensus 322 p~L~~hfl~~~~~------------------~~~~~~~~~s~~a~~~L~~y--~WPG-NVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 322 PLLAEHFLKRFAA------------------ELGRPPKGFSPEALAALLAY--DWPG-NVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred HHHHHHHHHHHHH------------------HcCCCCCCCCHHHHHHHHhC--CCCh-HHHHHHHHHHHHHhcCCccccc
Confidence 77778777654 23344456999999999955 7888 9999999999999998888888
Q ss_pred HHHHHH
Q 006700 604 SQLFRE 609 (635)
Q Consensus 604 ~~~i~~ 609 (635)
.+++..
T Consensus 381 ~~~l~~ 386 (464)
T COG2204 381 VEDLPL 386 (464)
T ss_pred hhhccc
Confidence 777553
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.9e-20 Score=193.95 Aligned_cols=172 Identities=26% Similarity=0.323 Sum_probs=124.9
Q ss_pred CccccChHHHHHHHHHHHHHhcc-------cccCCCCceEEEecCCCCChHHHHHHHHHHhC-------CCeeeccCCCc
Q 006700 358 GDIILHPSLQRRIQHLAKATANT-------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDV 423 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~-------~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-------~~~~~l~~~~~ 423 (635)
.+++|.+.+++.|..++...... .....+..++||+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 47999999999998887543221 11112345799999999999999999998762 24777776665
Q ss_pred cc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---
Q 006700 424 AP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 499 (635)
Q Consensus 424 ~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--- 499 (635)
.. +.+.+......+|..+. ++||||||++.+...++... ....++..|+..+++...+++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~---~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERD---YGSEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 32 33344445556665543 68999999999865433222 234566677777776677888888886432
Q ss_pred --CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 500 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 500 --~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
.++|+|.+||+.+|+|++|+.+++..|+..++.+...
T Consensus 176 ~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 176 FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC
Confidence 3569999999999999999999999999999987643
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=4.5e-20 Score=199.81 Aligned_cols=210 Identities=21% Similarity=0.238 Sum_probs=152.4
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee---------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--------------- 416 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--------------- 416 (635)
..+..|++|||++.+...|...+.. +..++.+||+||||||||++|+.||+.+++...
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 3456899999999999988776552 223345899999999999999999999876310
Q ss_pred -eccCCCcccch---hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 417 -MMTGGDVAPLG---AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 417 -~l~~~~~~~~~---~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
.-...++..+. ......++.+...+. ..+++.|+||||+|.|. ...++.||..+++.+.++
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhhcCCCce
Confidence 00011111111 111233344333332 23457899999999873 346788898899888999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.+..+.+.+++|| .++.|..++.++....+...+..... .++++++.
T Consensus 153 iFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi-------------------------~~e~eAL~ 206 (484)
T PRK14956 153 VFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENV-------------------------QYDQEGLF 206 (484)
T ss_pred EEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 88999999999998888888765432 38999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.|+..++| +++..++.++.++... ...||.+.+..++
T Consensus 207 ~Ia~~S~G----d~RdAL~lLeq~i~~~-~~~it~~~V~~~l 243 (484)
T PRK14956 207 WIAKKGDG----SVRDMLSFMEQAIVFT-DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHcCC----hHHHHHHHHHHHHHhC-CCCcCHHHHHHHh
Confidence 99999988 6666666664433222 2358888887765
No 48
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=3e-20 Score=205.53 Aligned_cols=208 Identities=19% Similarity=0.227 Sum_probs=151.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe----e---eccC----
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY----A---MMTG---- 420 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~----~---~l~~---- 420 (635)
..+..|++|||++.+++.|.+.+.. +..++.+||+||+|||||++|+.|++.+++.- . .-.|
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 4567899999999999988877653 23344589999999999999999999997620 0 0001
Q ss_pred ----------CCcccch---hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 421 ----------GDVAPLG---AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 421 ----------~~~~~~~---~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
.++..+. ......++++++... ...++.|+||||+|.|. ...+|.||..+++
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNALLKTLEE 150 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAMLKTLEE 150 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHHHHhhcc
Confidence 0111111 112344455554433 24457899999999883 3568899999999
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.+++||++||.++.|.+.|+||| ..+.|..++.++....+..++..... .++
T Consensus 151 PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi-------------------------~~d 204 (700)
T PRK12323 151 PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI-------------------------AHE 204 (700)
T ss_pred CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 9999999999999999999999999 99999999999999998888765432 278
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 609 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~ 609 (635)
++.+..|+..+.| +.|+...++. +..+++. +.||.+++..
T Consensus 205 ~eAL~~IA~~A~G-s~RdALsLLd--Qaia~~~--~~It~~~V~~ 244 (700)
T PRK12323 205 VNALRLLAQAAQG-SMRDALSLTD--QAIAYSA--GNVSEEAVRG 244 (700)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc--CCcCHHHHHH
Confidence 8899999999988 6667666665 3333432 3465554443
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=3.4e-20 Score=190.36 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=128.0
Q ss_pred CCccccChHHHHHHHHHHHHHhcc-------cccCCCCceEEEecCCCCChHHHHHHHHHHh-------CCCeeeccCCC
Q 006700 357 NGDIILHPSLQRRIQHLAKATANT-------KIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYAMMTGGD 422 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~-------~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-------~~~~~~l~~~~ 422 (635)
++++||.+.+++.|..++...... ........|+||+||||||||++|+.+|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 478999999999999887665321 1122334689999999999999999999875 23566666666
Q ss_pred ccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 423 VAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 423 ~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
+.. +.++....+.++|..+. ++||||||+|.|..... .......++.++..+++...++++|++++..+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 543 34455566677776553 67999999999853211 12335678888888887778888888775433
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhc
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~ 535 (635)
.++|++.+||+..|.||.|+.+++..|+..++....
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999987643
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=1.4e-19 Score=192.02 Aligned_cols=215 Identities=22% Similarity=0.322 Sum_probs=162.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+..|++++|+++.++.+..++...... +.+++++|||||||||||++|+++|+.++.++..+++..+.. ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-----~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR---GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-----PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc---CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-----hHH
Confidence 347899999999999998777654322 345678999999999999999999999999887776654322 123
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------C---------CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------D---------QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------~---------~~~~viiI~ttN~~ 498 (635)
+..++.. ...++||||||||.+. ......+..++.... . .-.++++|++||.+
T Consensus 93 l~~~l~~---l~~~~vl~IDEi~~l~---------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 93 LAAILTN---LEEGDVLFIDEIHRLS---------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred HHHHHHh---cccCCEEEEecHhhcc---------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 3344433 2357899999999883 223334444433221 1 11347899999999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
..+++.+.+||+.++.|++|+.+++.+|+...+..... .++++.+..|+..+.|
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-------------------------~~~~~~~~~ia~~~~G- 214 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-------------------------EIDEEGALEIARRSRG- 214 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHHHHHHHHcCC-
Confidence 99999999999989999999999999999988776433 3889999999999988
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
++|.+..++..+...+...+...||.+++..+++..
T Consensus 215 ~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 215 TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 557888888877766655455689999999999764
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=9.9e-20 Score=200.08 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=153.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------------------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------ 414 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------ 414 (635)
.+..|+++||++++...|...+.. +..++++|||||||||||++|+.+|+.+++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 456889999999998888765442 3344569999999999999999999998652
Q ss_pred ------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 415 ------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 415 ------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
++.++++. ......++.+...+. ....+.||||||+|.|. ...++.|+..+++.
T Consensus 82 ~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk~LE~p 144 (472)
T PRK14962 82 EGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLKTLEEP 144 (472)
T ss_pred cCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHHHHHhC
Confidence 22332211 111233444443332 22346799999999873 23567778888877
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 486 ~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
+.++++|++|+.+..+++++.+|| .++.|.+|+.++...++...+..... .+++
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi-------------------------~i~~ 198 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGI-------------------------EIDR 198 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 888999999888889999999999 79999999999999998888765432 2899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
+++..|+..+.| |++.+++.++.++...+ ..||.+++..++...
T Consensus 199 eal~~Ia~~s~G----dlR~aln~Le~l~~~~~-~~It~e~V~~~l~~~ 242 (472)
T PRK14962 199 EALSFIAKRASG----GLRDALTMLEQVWKFSE-GKITLETVHEALGLI 242 (472)
T ss_pred HHHHHHHHHhCC----CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcCC
Confidence 999999998877 77777777776543323 349999998887543
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.7e-19 Score=189.39 Aligned_cols=212 Identities=23% Similarity=0.319 Sum_probs=156.6
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH 435 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~ 435 (635)
+|+++||++++++.|..++...... ..++++++|+||||||||++|+++|+.++.++..+.++..... ..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~-----~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP-----GDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----hhHH
Confidence 5799999999999998877654332 2345689999999999999999999999988776665433221 1222
Q ss_pred HHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC---------------CCCCCEEEEEEeCCCCC
Q 006700 436 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---------------DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 436 ~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~---------------~~~~~viiI~ttN~~~~ 500 (635)
..+.. ...+.||||||++.+.+ .....|..++.... ....++++|++||.+..
T Consensus 74 ~~l~~---~~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 74 AILTN---LEEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM 141 (305)
T ss_pred HHHHh---cccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc
Confidence 33322 33468999999998842 23333433332211 11234889999999999
Q ss_pred CcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 501 LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 501 l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++++||..++.|++|+.+++.+++...+..... .++++.+..|+..+.| ++
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-------------------------~~~~~al~~ia~~~~G-~p 195 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-------------------------EIEPEAALEIARRSRG-TP 195 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-------------------------CcCHHHHHHHHHHhCC-Cc
Confidence 999999999888999999999999999987764322 3889999999999988 55
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
|.+..++..+...+...+...+|.+++..++..
T Consensus 196 R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 196 RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 777777776655554445567999999999987
No 53
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.84 E-value=4.5e-20 Score=184.65 Aligned_cols=193 Identities=19% Similarity=0.264 Sum_probs=146.6
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------eeeccCCCccc-
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------YAMMTGGDVAP- 425 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------~~~l~~~~~~~- 425 (635)
.+..|++++|++.++..|...+.. +..+++|||||||||||++|+++|+++.++ +...+.++-..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 456889999999999999876553 223479999999999999999999999652 34444444332
Q ss_pred -chhhHHHHHHHHHHHH-----hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006700 426 -LGAQAVTKIHEIFDWA-----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 499 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a-----~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~ 499 (635)
++.........+.... ..+.++.|++|||+|.|. ......|...+++.++.++||+.||+.+
T Consensus 103 svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------sdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------SDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred cchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh------------HHHHHHHHHHHhccccceEEEEEcCChh
Confidence 1222111222221111 113355899999999873 3455666666777889999999999999
Q ss_pred CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 500 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 500 ~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
.|...+.||+ ..+.|+....+.....|+.+..+... ++++++++.|+..++|
T Consensus 171 rii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v-------------------------~~d~~al~~I~~~S~G-- 222 (346)
T KOG0989|consen 171 RIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGV-------------------------DIDDDALKLIAKISDG-- 222 (346)
T ss_pred hCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHHHcCC--
Confidence 9999999999 88899999998888888888876654 4899999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVY 595 (635)
Q Consensus 580 grdI~~L~~~~q~aa~ 595 (635)
|++..+..+|.++.
T Consensus 223 --dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 223 --DLRRAITTLQSLSL 236 (346)
T ss_pred --cHHHHHHHHHHhhc
Confidence 99999998888877
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.8e-19 Score=178.59 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=171.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+..|.++||++++++.+.-++.+.+. .+..+-|+|||||||.||||+|..+|+++|.++-..+|+-+..- +.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~---r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-----gD 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK---RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-----GD 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh---cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-----hh
Confidence 55789999999999999887776543 35566789999999999999999999999999888777654322 23
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------C---------CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------D---------QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------~---------~~~~viiI~ttN~~ 498 (635)
+..++.. ..++.|||||||+++. ...-++|...+..+. . +-.+|.+|++|.+.
T Consensus 94 laaiLt~---Le~~DVLFIDEIHrl~---------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 94 LAAILTN---LEEGDVLFIDEIHRLS---------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred HHHHHhc---CCcCCeEEEehhhhcC---------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 3344433 3468999999999983 445555555544321 1 22468899999999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
..+...+++||..+..+..++.++...|+......+.. .++++...+||.++.|
T Consensus 162 G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-------------------------~i~~~~a~eIA~rSRG- 215 (332)
T COG2255 162 GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-------------------------EIDEEAALEIARRSRG- 215 (332)
T ss_pred ccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-------------------------CCChHHHHHHHHhccC-
Confidence 99999999999999999999999999999988765544 3889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
++|=-..|+..+...+...++..|+.+....+++..
T Consensus 216 TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 216 TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 787777888888888887788899999888888754
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.4e-20 Score=211.41 Aligned_cols=213 Identities=27% Similarity=0.437 Sum_probs=173.0
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhc-----ccccCCCCceEEEecCCCCChHHHHHHHHHHhC-----CCeeeccC
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTG 420 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~-----~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-----~~~~~l~~ 420 (635)
.....+|++|-|.+.+...|++.+...-. ...+..|++++|||||||||||+.|+++|..+. ..|+.-.|
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34567899999999999999887764322 234567899999999999999999999999983 34566667
Q ss_pred CCcc-cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCC
Q 006700 421 GDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNR 497 (635)
Q Consensus 421 ~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~ 497 (635)
.+.. .+.++....+.-+|..|.+.. |+|+|+||||-+.+.|++.. ...+..+...||..++ +..+.++||++||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 7654 478899999999999998776 79999999999998886643 1233445555665554 45678999999999
Q ss_pred CCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006700 498 PGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 575 (635)
Q Consensus 498 ~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 575 (635)
++.++|++++ |||..++|++|+.+.|..|+..+-.+... .+....+..||..|
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~-------------------------~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP-------------------------PISRELLLWLAEET 470 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC-------------------------CCCHHHHHHHHHhc
Confidence 9999999987 99999999999999999999987654332 26778899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 006700 576 EGFSGREIAKLMASV 590 (635)
Q Consensus 576 ~G~sgrdI~~L~~~~ 590 (635)
.||-|+||+.||..+
T Consensus 471 ~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEA 485 (1080)
T ss_pred cccchHHHHHHHHHH
Confidence 999999999999633
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=1.1e-19 Score=203.39 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=149.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee--eccCC--------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MMTGG-------- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--~l~~~-------- 421 (635)
+-+..|++||||+.+++.|.+.+.. +...+.+||+||+|||||++++.|++.+++..- ...|+
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~-------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG-------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 4567899999999999998876541 233445799999999999999999999875311 00111
Q ss_pred ------Ccccch---hhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 422 ------DVAPLG---AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 422 ------~~~~~~---~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
++..+. ......++.++..+.. ..++.|+||||+|.|. ...+|.||..+++.+.++
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHHhcCCCe
Confidence 111111 1123345555554432 2457899999999883 245788888888888899
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++||.+..|.+.|+||| ..+.|..++.++...+|..++..... .++++.+.
T Consensus 151 ~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI-------------------------~id~eAL~ 204 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERI-------------------------AFEPQALR 204 (830)
T ss_pred EEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 99999999999999999988875433 27899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 610 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~ 610 (635)
.|++.+.| +.|+...|+. +..+++. +.||.+++..+
T Consensus 205 lIA~~A~G-smRdALsLLd--QAia~~~--~~It~~~V~~~ 240 (830)
T PRK07003 205 LLARAAQG-SMRDALSLTD--QAIAYSA--NEVTETAVSGM 240 (830)
T ss_pred HHHHHcCC-CHHHHHHHHH--HHHHhcc--CCcCHHHHHHH
Confidence 99999988 4444444433 3344442 23555554443
No 57
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-19 Score=182.46 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=176.7
Q ss_pred cCCccccChHHHHHHHHHHHHHhc-ccccC-----CCCceEEEecCCCCChHHHHHHHHHHhC---------CCeeeccC
Q 006700 356 NNGDIILHPSLQRRIQHLAKATAN-TKIHQ-----APFRNMLFYGPPGTGKTMVAREIARKSG---------LDYAMMTG 420 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~-~~~~~-----~p~~~iLL~GppGtGKT~lA~~lA~~l~---------~~~~~l~~ 420 (635)
.|+.+|....++++|...+..... +..+. ...+-+|||||||||||+|+++||+.+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 568889999999999876654322 22211 1235699999999999999999999983 34567777
Q ss_pred CCccc-chhhHHHHHHHHHHHHhh----cCCcEEEEecCchhhhhhccc---ccCcHHHHHHHHHHHHHhC--CCCCCEE
Q 006700 421 GDVAP-LGAQAVTKIHEIFDWAKK----SKKGLLLFIDEADAFLCERNS---IHMSEAQRSALNALLFRTG--DQSRDIV 490 (635)
Q Consensus 421 ~~~~~-~~~~~~~~l~~~f~~a~~----~~~~~vL~iDEid~l~~~r~~---~~~~~~~~~~L~~ll~~~~--~~~~~vi 490 (635)
..+.+ +.+++.+.+..+|..... .+.-.+++|||++.+...|.+ ...+.+.-++.|++|..++ ....||+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 77654 667777777777776543 222235779999999887743 2344566789999999987 4667899
Q ss_pred EEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCC--ccchhhhhhhhhhhhhccCCCHHHH
Q 006700 491 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSS--SLKWGHLFKKQQQKITIKDLSDNVI 568 (635)
Q Consensus 491 iI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 568 (635)
+++|+|..+.+|.+|.+|-|.+.++.+|+..-+..|++..+.++....-.... ...|..+ ..+.+...
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~----------i~~~~~~~ 369 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEF----------IKYQKALR 369 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHH----------hHhhHhHH
Confidence 99999999999999999999999999999999999999999887541100000 0011111 11233333
Q ss_pred HHHHHH-cCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 569 QEAARK-TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 569 ~~la~~-t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
..+... +.|.|||-|++|--.+++..... ..+|.+.|..++-..+..+
T Consensus 370 ~~~~~~~~~gLSGRtlrkLP~Laha~y~~~--~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 370 NILIELSTVGLSGRTLRKLPLLAHAEYFRT--FTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred HHHHHHhhcCCccchHhhhhHHHHHhccCC--CccChHHHHHHHHHHHHHH
Confidence 334433 58999999999977666554432 4688888877776665443
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=1.4e-18 Score=203.33 Aligned_cols=230 Identities=19% Similarity=0.235 Sum_probs=151.4
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----------ch
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------~~ 427 (635)
++++|++.+++.+...+........ ....++||+||||||||++|++||..++.+|+.++++.+.. +.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~ 397 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYV 397 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCcee
Confidence 5589999999999876554332111 12237999999999999999999999999999887654321 22
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH---------h-C--CCCCCEEEEEEe
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR---------T-G--DQSRDIVLVLAT 495 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~---------~-~--~~~~~viiI~tt 495 (635)
+...+.+...|..+...+ .||||||||.+.+..... ...+|..++.. . + -+..+++||+||
T Consensus 398 g~~~g~i~~~l~~~~~~~--~villDEidk~~~~~~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 398 GAMPGRIIQGLKKAKTKN--PLFLLDEIDKIGSSFRGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred CCCCchHHHHHHHhCcCC--CEEEEechhhcCCccCCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 333455666777665433 389999999997532211 11222222221 0 0 123578999999
Q ss_pred CCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH-
Q 006700 496 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK- 574 (635)
Q Consensus 496 N~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~- 574 (635)
|..+.++++|++|| .+|.|+.|+.+++..|++.++........+- ....+ .++++++..|+..
T Consensus 471 N~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l------------~~~~~---~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 471 NSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGL------------KPDEL---KITDEALLLLIKYY 534 (775)
T ss_pred CCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCC------------CcceE---EECHHHHHHHHHhc
Confidence 99999999999999 6899999999999999998874322100000 01112 2889999998864
Q ss_pred cCCCCHHHHHHHHHHHHHH-HH-----cCCC------CccCHHHHHHHHH
Q 006700 575 TEGFSGREIAKLMASVQAA-VY-----ARPD------CVLDSQLFREVVE 612 (635)
Q Consensus 575 t~G~sgrdI~~L~~~~q~a-a~-----~s~~------~~lt~~~i~~~l~ 612 (635)
|..+..|+|+..+..+... ++ +... -.++.+++...+.
T Consensus 535 ~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 535 TREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred ChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4456677877766433322 22 1111 3678887777654
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=3.3e-19 Score=197.89 Aligned_cols=207 Identities=18% Similarity=0.204 Sum_probs=155.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
+.+..|++|||++.+.+.|...+.. +..++.+||+||||||||++|+.||+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4567899999999999998877653 2334458999999999999999999998653
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.++++. ......++.+.+.+ ....++.|+||||+|.|. ...++.||..+++
T Consensus 83 ~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk~LEe 145 (509)
T PRK14958 83 DEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLKTLEE 145 (509)
T ss_pred hcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHHHHhc
Confidence 22222211 12233344444433 234467899999999883 3457888998998
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.+++||++|+.+..+.+.+++|| ..+.|.+++..+....+...+..... .++
T Consensus 146 pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi-------------------------~~~ 199 (509)
T PRK14958 146 PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENV-------------------------EFE 199 (509)
T ss_pred cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8899999999999999999999999 88999999999999888888876543 278
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
++++..|+..+.| +.|++..++. +..+|+ .+.||.++|..++..
T Consensus 200 ~~al~~ia~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~lg~ 243 (509)
T PRK14958 200 NAALDLLARAANG-SVRDALSLLD--QSIAYG--NGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHH--HHHhcC--CCCcCHHHHHHHHCC
Confidence 8999999999877 5556555554 345554 456888888877643
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=5.1e-19 Score=196.28 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=154.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|++|||++.+.+.|...+.. +..++.+||+||+|||||++|+.+|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~-------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER-------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 3456899999999999988776652 3344578999999999999999999998762
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.+++++ ......++.+...+. ...++.|+||||+|.|. ...++.|+..+++
T Consensus 82 ~~g~hpDviEIDAAs-----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLKtLEE 144 (702)
T PRK14960 82 NEGRFIDLIEIDAAS-----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLKTLEE 144 (702)
T ss_pred hcCCCCceEEecccc-----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhc
Confidence 22222211 112334455544432 23457899999999873 2357788888888
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.++.||++|+.+..+.+.+++|| .++.|.+++.++....+...+..... .++
T Consensus 145 PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI-------------------------~id 198 (702)
T PRK14960 145 PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQI-------------------------AAD 198 (702)
T ss_pred CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8888999999999999999999999 89999999999999999998876543 389
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
++++..|+..+.| +.|++..++. ++.+++ .+.||.+++..++.
T Consensus 199 ~eAL~~IA~~S~G-dLRdALnLLD--QaIayg--~g~IT~edV~~lLG 241 (702)
T PRK14960 199 QDAIWQIAESAQG-SLRDALSLTD--QAIAYG--QGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHhc
Confidence 9999999999877 5556555554 444554 45688888877654
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=6.1e-19 Score=198.35 Aligned_cols=211 Identities=20% Similarity=0.240 Sum_probs=152.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee--eccCC--------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MMTGG-------- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--~l~~~-------- 421 (635)
+.+..|++|||++.+.+.|...+.. +..++.+||+||+|||||++|+.||+.+++... ...|+
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 3457899999999999988776653 223345799999999999999999999876311 01111
Q ss_pred ------Ccccchh---hHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 422 ------DVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 422 ------~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
++..+.. .....++.+...+ ...+++.|+||||+|.|. ...+|.||..+++.+.++
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLEEPp~~v 150 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPEHV 150 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHHcCCCCe
Confidence 1111111 1223344443332 234567899999999883 357889999999999999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.+..|.+.|+||| ..+.|.+++.++....|...+..... .+++..+.
T Consensus 151 ~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i-------------------------~~e~~aL~ 204 (647)
T PRK07994 151 KFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI-------------------------PFEPRALQ 204 (647)
T ss_pred EEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999998 99999999999999999988865432 27889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.|+..+.| +.|+...++. ++.+++ .+.||.+++..++.
T Consensus 205 ~Ia~~s~G-s~R~Al~lld--qaia~~--~~~it~~~v~~~lg 242 (647)
T PRK07994 205 LLARAADG-SMRDALSLTD--QAIASG--NGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHc
Confidence 99999988 5555555554 333332 34577777776654
No 62
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=2.9e-19 Score=185.18 Aligned_cols=170 Identities=28% Similarity=0.353 Sum_probs=126.6
Q ss_pred ccccChHHHHHHHHHHHHHhcc-------cccCCCCceEEEecCCCCChHHHHHHHHHHhC-------CCeeeccCCCcc
Q 006700 359 DIILHPSLQRRIQHLAKATANT-------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDVA 424 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~-------~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-------~~~~~l~~~~~~ 424 (635)
.+||.+++++.|..++...... .....|..++||+||||||||++|++++..+. .+++.+++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 6999999999998887654321 11122445899999999999999999988762 267788776654
Q ss_pred c-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC--C--
Q 006700 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--G-- 499 (635)
Q Consensus 425 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~--~-- 499 (635)
. +.+.+...+.++|..+. ++||||||++.+.+.++.. .....+.+.|+..++....+++||++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~---~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNER---DYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred HhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCcc---chHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 3 33444456667776653 6899999999986433222 223456667777777677788999887643 2
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhc
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~ 535 (635)
.++|+|.+||+..|+||+|+.+++..|+..++.+..
T Consensus 176 ~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 176 FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999998754
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=6.9e-19 Score=185.87 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=147.6
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-----CeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-----~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++++...|..++.. ...+|+|||||||||||++|+++|+.+.. .++.++.++...
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~-- 77 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG-- 77 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc--
Confidence 456789999999999988776441 22347999999999999999999999732 345555544321
Q ss_pred hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHH
Q 006700 428 AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 504 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~ 504 (635)
.+........|.... ....+.|++|||+|.|. ...+..|. ..++..+..+.||++||....+.+.
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt---------~~aq~aL~---~~lE~~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT---------SGAQQALR---RTMEIYSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC---------HHHHHHHH---HHHhcccCCceEEEEeCCccccchh
Confidence 122222222221111 01346799999999883 34444444 4444455667899999999999999
Q ss_pred HHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHH
Q 006700 505 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 584 (635)
Q Consensus 505 l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 584 (635)
+.+|+ .++.|++|+.++....+...+..... .++++.+..|+..+.| |++
T Consensus 146 L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi-------------------------~i~~~~l~~i~~~~~g----DlR 195 (319)
T PLN03025 146 IQSRC-AIVRFSRLSDQEILGRLMKVVEAEKV-------------------------PYVPEGLEAIIFTADG----DMR 195 (319)
T ss_pred HHHhh-hcccCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CHH
Confidence 99999 79999999999999999988876543 2789999999998877 999
Q ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 585 KLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 585 ~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.+++.++.+..+ ...||.+++.+++
T Consensus 196 ~aln~Lq~~~~~--~~~i~~~~v~~~~ 220 (319)
T PLN03025 196 QALNNLQATHSG--FGFVNQENVFKVC 220 (319)
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHc
Confidence 999999966544 3467777776543
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=9.3e-19 Score=199.41 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=141.0
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee-e-ccCC--------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-M-MTGG-------- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-~-l~~~-------- 421 (635)
..+..|++|||++.+...|..++.. +..++.+||+||||||||++|+.||+.+++... . ..|+
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 3457899999999999998776542 223345799999999999999999999976411 0 0011
Q ss_pred ------Ccccchh---hHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 422 ------DVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 422 ------~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
++..+.. .....++.+...+ ...+++.|+||||+|.|. ...++.||..+++.+.++
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEEPPEHV 150 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhccCCCe
Confidence 1110110 1122333333332 223457899999999883 457888999999999999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.+..|.+.|++|| .++.|.+++.++....|...+..... .++++.+.
T Consensus 151 rFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI-------------------------~~edeAL~ 204 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL-------------------------PFEAEALT 204 (944)
T ss_pred EEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 99999999999999999888765322 27899999
Q ss_pred HHHHHcCCCCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMA 588 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~ 588 (635)
.|+..+.| +.|++..++.
T Consensus 205 lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 205 LLAKAANG-SMRDALSLTD 222 (944)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 99999988 5556655554
No 65
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=8.5e-19 Score=191.98 Aligned_cols=205 Identities=21% Similarity=0.239 Sum_probs=154.5
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|+++|||+.+.+.|.+.+.. +..++++||+||+|||||++|+.+|+.+++.
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 4457899999999999988765442 3445689999999999999999999987442
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.+++++ ......++.+.+.+. ....+.|+||||+|.|. ...+|.|+..+++
T Consensus 80 ~~~~~~Dv~eidaas-----~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LEe 142 (491)
T PRK14964 80 KNSNHPDVIEIDAAS-----NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLEE 142 (491)
T ss_pred hccCCCCEEEEeccc-----CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHhC
Confidence 23333321 122334555554443 23457899999999873 2467888999998
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+..++||++|+.+..+.+.+++|| ..+.|.+++.++....+...+..... .++
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi-------------------------~i~ 196 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENI-------------------------EHD 196 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8999999999999999999999999 89999999999999999988876543 389
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++++..|+..+.| +.|++..++. +...|.. ..||.+++..++
T Consensus 197 ~eAL~lIa~~s~G-slR~alslLd--qli~y~~--~~It~e~V~~ll 238 (491)
T PRK14964 197 EESLKLIAENSSG-SMRNALFLLE--QAAIYSN--NKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcC--CCCCHHHHHHHH
Confidence 9999999999977 5555555554 2334443 468999888865
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.4e-18 Score=186.45 Aligned_cols=211 Identities=21% Similarity=0.240 Sum_probs=150.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--ccC---------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTG--------- 420 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~--l~~--------- 420 (635)
..+..|++||||+.+.+.+...+.. +..++.+||+||||||||++|+.+|+.+++.... -.|
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3456899999999999998766542 2334568999999999999999999998643211 001
Q ss_pred -----CCcccch---hhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 421 -----GDVAPLG---AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 421 -----~~~~~~~---~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
.++..+. ......+..+.+.+.. ...+.|+||||+|.+. ...++.++..+++.+.++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTLEEPPQHI 150 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHHhcCCCCe
Confidence 0111111 1223344455444332 2345799999999872 235677888888888899
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
.+|++|+.++.+.+.+.+|+ ..+.|++|+.++...++...+..... .++++++.
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~-------------------------~i~~~al~ 204 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI-------------------------DTDEYALK 204 (363)
T ss_pred EEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999998889999999999 89999999999999999988876433 27889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.|+..+.| ++|++..++..+ ..++ ...||.+++.+++.
T Consensus 205 ~ia~~s~G-~~R~al~~l~~~--~~~~--~~~It~~~v~~~l~ 242 (363)
T PRK14961 205 LIAYHAHG-SMRDALNLLEHA--INLG--KGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHcCC-CHHHHHHHHHHH--HHhc--CCCCCHHHHHHHHC
Confidence 99999877 555544444422 2332 46789988887664
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=1.8e-18 Score=190.87 Aligned_cols=215 Identities=23% Similarity=0.275 Sum_probs=157.6
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec------cC-----
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM------TG----- 420 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l------~~----- 420 (635)
..+..|+++||++.+...|...+.. +..++++||+||||||||++|+.+|+.+++..... .|
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 4567899999999999988765432 34456799999999999999999999986632100 00
Q ss_pred ---------CCcccc---hhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 421 ---------GDVAPL---GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 421 ---------~~~~~~---~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
.++..+ .......++.+++.+.. ..++.|+||||+|.+. ...++.|+..+++.
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~LEep 155 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTLEEP 155 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHHhhc
Confidence 111111 11234556666665543 2356899999999873 24577888888888
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 486 ~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
+..++||++|+.++.+.+.+.+|+ ..+.|.+++.++...++...+..... .+++
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi-------------------------~ie~ 209 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENL-------------------------KTDI 209 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 889999999999999999999999 88999999999999999999876543 3789
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-CCCccCHHHHHHHHHHH
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PDCVLDSQLFREVVEYK 614 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s-~~~~lt~~~i~~~l~~~ 614 (635)
+++..|+..+.| +.|++-.++.. ++.+.. .+..||.+++..++...
T Consensus 210 eAL~~Ia~~s~G-slR~al~~Ldk--ai~~~~~~~~~It~~~V~~llg~~ 256 (507)
T PRK06645 210 EALRIIAYKSEG-SARDAVSILDQ--AASMSAKSDNIISPQVINQMLGLV 256 (507)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH--HHHhhccCCCCcCHHHHHHHHCCC
Confidence 999999999987 55565555552 224433 23468888888776443
No 68
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.6e-18 Score=194.66 Aligned_cols=206 Identities=19% Similarity=0.268 Sum_probs=152.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|++|||++.+.+.|.+++.. +..++.+||+||+|||||++|+.||+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 3457899999999999988876653 2233458999999999999999999998652
Q ss_pred ------------eeeccCCCcccchhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHH
Q 006700 415 ------------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL 479 (635)
Q Consensus 415 ------------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll 479 (635)
|+.+++. .......++.+...+.. ..++.|+||||+|.|. ...+|.||
T Consensus 83 ~C~~i~~g~h~D~~eldaa-----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaLL 145 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAA-----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAML 145 (618)
T ss_pred HHHHHHcCCCCceeecCcc-----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 1122111 11123344555544332 3357899999999873 34588899
Q ss_pred HHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh
Q 006700 480 FRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559 (635)
Q Consensus 480 ~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (635)
..+++.+.+++||++|+.+..+.+.+++|| .++.|..++.++....+...+.....
T Consensus 146 KtLEEPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi----------------------- 201 (618)
T PRK14951 146 KTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV----------------------- 201 (618)
T ss_pred HhcccCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC-----------------------
Confidence 999988899999999999999999999999 99999999999999999988876543
Q ss_pred ccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 560 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 560 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.++++.+..|+..+.| +.|++..+++ +..+++ ...||.++++.++.
T Consensus 202 --~ie~~AL~~La~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~Lg 247 (618)
T PRK14951 202 --PAEPQALRLLARAARG-SMRDALSLTD--QAIAFG--SGQLQEAAVRQMLG 247 (618)
T ss_pred --CCCHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHc
Confidence 3789999999999888 5555555543 344454 35688887777653
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.6e-18 Score=193.25 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=153.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|++|||++.++..|...+.. +...+++||+||||||||++|+.||+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 3456899999999999888876652 2234579999999999999999999998753
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 487 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~ 487 (635)
++.+++.. ..+.+....+...+.......++.||||||+|.|. ...++.|+..+++...
T Consensus 83 ~~g~hpDv~eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 83 TQGMHVDVVEIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEPPA 148 (624)
T ss_pred hcCCCCceEEEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhccCC
Confidence 22222211 12223334444444444444557899999999873 3456788888888888
Q ss_pred CEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 488 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 488 ~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+++||++||.+..+.+.|++|| .++.|+.++.++...+|...+..... .++++.
T Consensus 149 ~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi-------------------------~id~ea 202 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGV-------------------------DYDPAA 202 (624)
T ss_pred CEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 8999999999999999999999 78999999999999999887765433 288999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+..|+..+.| +++.+++.+..+++. +...||.+++..++
T Consensus 203 l~lIA~~s~G----dlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 203 VRLIARRAAG----SVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 9999999877 555555555444433 34578888876654
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.1e-18 Score=191.05 Aligned_cols=206 Identities=19% Similarity=0.232 Sum_probs=154.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|++||||+.+...|..++.. +..++.+|||||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 3456789999999999998877663 2233457999999999999999999998541
Q ss_pred ------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 415 ------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 415 ------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
++.+++.. ......++.+...+. ....+.||||||+|.+. ...++.|+..++..
T Consensus 81 ~~~h~dv~el~~~~-----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep 143 (504)
T PRK14963 81 RGAHPDVLEIDAAS-----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEP 143 (504)
T ss_pred cCCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhC
Confidence 22222211 112233344333332 23456799999999762 34577888888888
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 486 ~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
+.++++|++||.+..+.+.+.+|+ ..+.|.+|+.++...++...+..... .+++
T Consensus 144 ~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi-------------------------~i~~ 197 (504)
T PRK14963 144 PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGR-------------------------EAEP 197 (504)
T ss_pred CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 888999999999999999999999 78999999999999999998876543 2789
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+++..|+..+.| |++.+++.++.+... +..||.+++..++..
T Consensus 198 ~Al~~ia~~s~G----dlR~aln~Lekl~~~--~~~It~~~V~~~l~~ 239 (504)
T PRK14963 198 EALQLVARLADG----AMRDAESLLERLLAL--GTPVTRKQVEEALGL 239 (504)
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHhc--CCCCCHHHHHHHHCC
Confidence 999999999888 777777777666543 347999888887543
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=7.4e-19 Score=202.33 Aligned_cols=203 Identities=17% Similarity=0.259 Sum_probs=148.0
Q ss_pred CccccChHHHHHHHHHHHHHhccc-ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc------chhhH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP------LGAQA 430 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~------~~~~~ 430 (635)
..||||+++++.|...+.....+. .+..|..++||+||||||||++|+.||..++.+++.++|+.+.. +.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 678999999999998887665543 33567778999999999999999999999999999998877532 11100
Q ss_pred HH----HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEEEEEe
Q 006700 431 VT----KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVLVLAT 495 (635)
Q Consensus 431 ~~----~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~viiI~tt 495 (635)
.+ .....+..+....+++||||||||.+. ..+++.|++.+++ +.++++||+||
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 00 111233344455678999999999762 3455556555542 24688999999
Q ss_pred CCC-------------------------CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhh
Q 006700 496 NRP-------------------------GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHL 550 (635)
Q Consensus 496 N~~-------------------------~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~ 550 (635)
|.. ..|.|+|++|+|.+|.|++++.++..+|+..++.+... .
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~-------------~ 672 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA-------------Q 672 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH-------------H
Confidence 943 13679999999999999999999999999999877643 3
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Q 006700 551 FKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 588 (635)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 588 (635)
+... ++.+. +++.+++.|+... ..|..|.|+.++.
T Consensus 673 l~~~--~i~l~-~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 673 LDQK--GVSLE-VSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHHC--CCCce-ECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 3332 33333 8999999999763 2345677877764
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.7e-18 Score=190.52 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=151.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|++|||++.+.+.|...+.. +..++.+||+||||||||++|+.||+.+++.
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3456899999999999988766542 2334458999999999999999999988642
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 487 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~ 487 (635)
++.+++. ...+.+....+...+........+.|+||||+|.|. ...++.||..+++.+.
T Consensus 83 ~~~~~~dlieidaa--s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK~LEepp~ 148 (546)
T PRK14957 83 NNNSFIDLIEIDAA--SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLKTLEEPPE 148 (546)
T ss_pred hcCCCCceEEeecc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHHHHhcCCC
Confidence 1112111 012222222333333222233457899999999873 3467788888888888
Q ss_pred CEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 488 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 488 ~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
.++||++|+.+..+.+.+++|| .+++|.+++.++....+...+..... .+++.+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi-------------------------~~e~~A 202 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI-------------------------NSDEQS 202 (546)
T ss_pred CceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 9999999988888998999999 99999999999999888888776543 278999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+..|+..+.| |++.+++.++.++...+ ..||.+++++++..
T Consensus 203 l~~Ia~~s~G----dlR~alnlLek~i~~~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 203 LEYIAYHAKG----SLRDALSLLDQAISFCG-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHhcc-CCCCHHHHHHHHcc
Confidence 9999999877 55555555544332222 56899888876543
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2.3e-18 Score=199.50 Aligned_cols=209 Identities=18% Similarity=0.174 Sum_probs=149.5
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---------------- 415 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~---------------- 415 (635)
.....|++||||+.+++.|...+.. +...+.+||+||+|||||++|+.||+.++|..
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 3456899999999999998877652 22334589999999999999999999997521
Q ss_pred ----------eeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 416 ----------AMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 416 ----------~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
+.+++.. ..+.+....+...+.......++.|+||||+|.|. ...+|.||..+++.
T Consensus 82 ~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaLLK~LEEp 147 (824)
T PRK07764 82 APGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNALLKIVEEP 147 (824)
T ss_pred HcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHHHHHHhCC
Confidence 1111111 01112222232222222234567899999999883 35688899999988
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 486 ~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
+.+++||++|+.++.|.+.|++|| .+|.|..++.++...+|..++..... .+++
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv-------------------------~id~ 201 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGV-------------------------PVEP 201 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 999999999999899999999999 89999999999999999888766433 2788
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+.+..|+..+.| +.+++..++.. ++...+...||.+++..++
T Consensus 202 eal~lLa~~sgG-dlR~Al~eLEK---Lia~~~~~~IT~e~V~all 243 (824)
T PRK07764 202 GVLPLVIRAGGG-SVRDSLSVLDQ---LLAGAGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH---HHhhcCCCCCCHHHHHHHh
Confidence 899999998877 55555555543 3222334567777666554
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2e-18 Score=193.37 Aligned_cols=213 Identities=20% Similarity=0.245 Sum_probs=156.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--ccC---------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTG--------- 420 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~--l~~--------- 420 (635)
..+..|++|||++.+++.|...+.. +..++.+||+||+|||||++|+.|++.+++.-.. ..|
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 4567899999999999998877553 3344679999999999999999999998653210 001
Q ss_pred --C---Ccccc---hhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 421 --G---DVAPL---GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 421 --~---~~~~~---~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
+ ++..+ .......++.++..+. ...++.||||||+|.|. ...++.||..+++.+.++
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHHhCCCCc
Confidence 1 11111 1122344555555432 23456899999999762 245778888888888899
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++||.+..+.+.+++|| ..+.|..++.++...+|...+..... .++++.+.
T Consensus 151 ~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi-------------------------~id~eAL~ 204 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKI-------------------------AYEPPALQ 204 (709)
T ss_pred EEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHHH
Confidence 99999999999999999999 88999999999999999988876543 37899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
.|+..+.| +.|++..++. ++.+++ .+.|+.++|..++...
T Consensus 205 ~Ia~~A~G-slRdAlnLLD--qaia~g--~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 205 LLGRAAAG-SMRDALSLLD--QAIALG--SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHhCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHccc
Confidence 99999877 5555555554 334443 3568888887776543
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.8e-18 Score=191.02 Aligned_cols=212 Identities=21% Similarity=0.228 Sum_probs=150.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee-------------ec
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-------------MM 418 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-------------~l 418 (635)
.-+..|++||||+.+.+.|...+.. +..++.+||+||+|||||++|+.||+.+++..- .+
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 3456899999999999998877652 233344899999999999999999999865210 00
Q ss_pred c---C--CCcccchh---hHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 006700 419 T---G--GDVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 487 (635)
Q Consensus 419 ~---~--~~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~ 487 (635)
. + .++..+.+ .....++.+.+.+ .....+.|+||||+|.|. ...+|.||..+++.+.
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~LEEpp~ 147 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKIVEEPPE 147 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHHHhcCCC
Confidence 0 0 01111111 1233344333333 233457899999999873 2478888999999999
Q ss_pred CEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 488 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 488 ~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+++||++|+.+..+.+.|++|+ .++.|..++.++...++..++..... .++++.
T Consensus 148 ~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi-------------------------~i~~~a 201 (584)
T PRK14952 148 HLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGV-------------------------VVDDAV 201 (584)
T ss_pred CeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 9999999999999999999998 89999999999999999888876543 278899
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
+..|+..+.| +.|++.++++ .++...+...||.+++..++.
T Consensus 202 l~~Ia~~s~G-dlR~aln~Ld---ql~~~~~~~~It~~~v~~llg 242 (584)
T PRK14952 202 YPLVIRAGGG-SPRDTLSVLD---QLLAGAADTHVTYQRALGLLG 242 (584)
T ss_pred HHHHHHHcCC-CHHHHHHHHH---HHHhccCCCCcCHHHHHHHHC
Confidence 9999988876 4445444444 433333355688777776643
No 76
>PRK04195 replication factor C large subunit; Provisional
Probab=99.80 E-value=3.4e-18 Score=190.30 Aligned_cols=208 Identities=21% Similarity=0.290 Sum_probs=154.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 432 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~ 432 (635)
.+..|++++|++.+...|..++..... +.+++++|||||||||||++|++||+.++.+++.+++++.... .
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~----g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~-----~ 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK----GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA-----D 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-----H
Confidence 455689999999999999988776542 3456789999999999999999999999999999998775421 1
Q ss_pred HHHHHHHHHhhc-----CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcH-HHH
Q 006700 433 KIHEIFDWAKKS-----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AIT 506 (635)
Q Consensus 433 ~l~~~f~~a~~~-----~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~-~l~ 506 (635)
.+..+...+... .++.||||||+|.+.... ....++.++..+.. .+..||++||.+..+.+ .+.
T Consensus 80 ~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 80 VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 222222222211 246899999999885421 11223344444432 33467888998888887 677
Q ss_pred ccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH
Q 006700 507 DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586 (635)
Q Consensus 507 ~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 586 (635)
+|+ ..|.|++|+..++..++..++..... .++++++..|+..+.| ||+.+
T Consensus 150 sr~-~~I~f~~~~~~~i~~~L~~i~~~egi-------------------------~i~~eaL~~Ia~~s~G----DlR~a 199 (482)
T PRK04195 150 NAC-LMIEFKRLSTRSIVPVLKRICRKEGI-------------------------ECDDEALKEIAERSGG----DLRSA 199 (482)
T ss_pred ccc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CHHHH
Confidence 777 89999999999999999988876543 2789999999999877 99999
Q ss_pred HHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 587 MASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 587 ~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++.++..+. +...+|.+++..++
T Consensus 200 in~Lq~~a~--~~~~it~~~v~~~~ 222 (482)
T PRK04195 200 INDLQAIAE--GYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHhc--CCCCCcHHHHHHhh
Confidence 999988443 34568888876654
No 77
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.79 E-value=9.8e-18 Score=197.30 Aligned_cols=199 Identities=17% Similarity=0.266 Sum_probs=144.2
Q ss_pred CccccChHHHHHHHHHHHHHhcc-cccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------
Q 006700 358 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~-~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-------- 425 (635)
..|+||+.+...|...+.....+ ..+..|..++||+||||||||++|++||+.+ +.+++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 77999999999998877765543 3345667789999999999999999999987 35677776655421
Q ss_pred ------chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCCC
Q 006700 426 ------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSRD 488 (635)
Q Consensus 426 ------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~ 488 (635)
.+.+..+.+ ..+.+..+++||||||+|.+ +..+++.|++.+++ ++.+
T Consensus 589 g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 589 GSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred CCCCcccCcCccchH----HHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 222222223 23335567899999999976 24566666666653 3578
Q ss_pred EEEEEEeCCCC-------------------------------------CCcHHHHccccceEecCCCCHHHHHHHHHHHH
Q 006700 489 IVLVLATNRPG-------------------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 489 viiI~ttN~~~-------------------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l 531 (635)
++||+|||... .|.|+|++|+|.+|.|.+++.++..+|+...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 99999999531 14578999999999999999999999999999
Q ss_pred HhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Q 006700 532 KKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 588 (635)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 588 (635)
.+... .+..+ ++.+. +++++++.|+... ..|..|.|+.++.
T Consensus 733 ~~l~~-------------rl~~~--~i~l~-~~~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 733 KNLFK-------------RLNEQ--GIQLE-VTERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred HHHHH-------------HHHHC--CcEEE-ECHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 87643 22222 33333 8999999999862 2445677777664
No 78
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=7.7e-19 Score=160.21 Aligned_cols=127 Identities=35% Similarity=0.588 Sum_probs=107.2
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCc
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 468 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~ 468 (635)
|||+||||||||++++.+|+.++.+++.++++.+. ....+....+..+|..+.....++||||||+|.+.+.. ....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 69999999999999999999999999999999886 46778888999999998776646999999999999887 33345
Q ss_pred HHHHHHHHHHHHHhCCC---CCCEEEEEEeCCCCCCcHHHH-ccccceEecCC
Q 006700 469 EAQRSALNALLFRTGDQ---SRDIVLVLATNRPGDLDSAIT-DRIDEVIEFPL 517 (635)
Q Consensus 469 ~~~~~~L~~ll~~~~~~---~~~viiI~ttN~~~~l~~~l~-~R~d~~i~~~~ 517 (635)
......++.++..++.. ..+++||+|||.++.+++.++ +||+..++||+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56666777777766543 356999999999999999999 99999999874
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=1.7e-18 Score=201.57 Aligned_cols=199 Identities=21% Similarity=0.320 Sum_probs=147.1
Q ss_pred CccccChHHHHHHHHHHHHHhccc-ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-----------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------- 425 (635)
..|+||+.+++.|...+.....+. .+..|..++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 679999999999988777655443 33456678999999999999999999999999999888776432
Q ss_pred ---chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEE
Q 006700 426 ---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVL 491 (635)
Q Consensus 426 ---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~vii 491 (635)
.|.+..+. +..+.+..+++||||||||.+. ..+.+.|++.+++ ++.+++|
T Consensus 534 ~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 534 PGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAH------------PDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCcccchhhH----HHHHHHhCCCeEEEEechhhcC------------HHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 12222222 3334356678999999999762 3455556655542 2567899
Q ss_pred EEEeCCCC-------------------------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 006700 492 VLATNRPG-------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 546 (635)
Q Consensus 492 I~ttN~~~-------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~ 546 (635)
|+|||... .+.|+|++|||.+|.|.+++.++..+|+...+.+...
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~---------- 667 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK---------- 667 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH----------
Confidence 99998642 2678999999999999999999999999999986543
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCCHHHHHHHHH
Q 006700 547 WGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMA 588 (635)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~ 588 (635)
.+... ++.+. +++++++.|+.. ...|..|.|+.++.
T Consensus 668 ---~l~~~--~~~l~-i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 668 ---QLNEK--NIKLE-LTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred ---HHHhC--CCeEE-eCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 22222 22332 899999999986 33456778887775
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.2e-18 Score=190.22 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=154.0
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--ccCC--------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTGG-------- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~--l~~~-------- 421 (635)
+.+..|++|||++.+.+.|...+.. +..++.+||+||||||||++|+.||+.+++.... -.|+
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3456899999999999988876552 2334458999999999999999999998663110 0110
Q ss_pred ------Ccccc---hhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 422 ------DVAPL---GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 422 ------~~~~~---~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
++..+ .......++.++..+.. ..++.|+||||+|.|. ...+|.||..+++.+.++
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHhCCCCCE
Confidence 11111 01223445555554432 3456899999999873 346788999999888999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.+..+.+.+++|| ..+.|..++.++....+...+..... .+++.++.
T Consensus 151 ~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi-------------------------~~~~~al~ 204 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI-------------------------PFDATALQ 204 (527)
T ss_pred EEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999998999999 99999999999999888888765433 27889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.|+..+.| +.|++..++. ++.+++ ...|+.+++..++.
T Consensus 205 ~la~~s~G-slr~al~lld--qai~~~--~~~I~~~~v~~~~~ 242 (527)
T PRK14969 205 LLARAAAG-SMRDALSLLD--QAIAYG--GGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHC
Confidence 99999877 5556666654 334453 45688888887664
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=7.7e-18 Score=189.41 Aligned_cols=210 Identities=25% Similarity=0.294 Sum_probs=153.5
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM-------------- 417 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~-------------- 417 (635)
..+..|++|||++.+.+.|...+.. +..++.+|||||+|||||++|+.+|+.+++.-..
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 4466899999999999998877653 2334568999999999999999999998642100
Q ss_pred --ccCCCcccch---hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 418 --MTGGDVAPLG---AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 418 --l~~~~~~~~~---~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
-+..++..+. ......++.+.+.+. ...++.|+||||+|.|. ...++.|+..+++.+.++
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLEEPPAHV 150 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhcCCCCCe
Confidence 0011111111 123344555555543 24457899999999873 246888898888888999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.++.+.+.+++|| ..+.|.+|+..+...++..++..... .++++++.
T Consensus 151 ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi-------------------------~i~~~al~ 204 (559)
T PRK05563 151 IFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGI-------------------------EYEDEALR 204 (559)
T ss_pred EEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999999999999999999 78999999999999999988876543 27889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.|+..+.| +.|++..++. +...++ +..||.+++..++
T Consensus 205 ~ia~~s~G-~~R~al~~Ld--q~~~~~--~~~It~~~V~~vl 241 (559)
T PRK05563 205 LIARAAEG-GMRDALSILD--QAISFG--DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHcCC-CHHHHHHHHH--HHHHhc--cCCCCHHHHHHHh
Confidence 99999877 5555555554 233443 3568888776654
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.79 E-value=8e-18 Score=183.81 Aligned_cols=205 Identities=25% Similarity=0.380 Sum_probs=149.7
Q ss_pred cccCCccccChHHHHH---HHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhH
Q 006700 354 IKNNGDIILHPSLQRR---IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~---l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~ 430 (635)
+..|+++||++++... |..++. . ..+.++||+||||||||++|+.|++.++.+|+.+++... .
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~---~-----~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~------~ 73 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIE---A-----GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS------G 73 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHH---c-----CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc------c
Confidence 3578999999998666 555543 1 223479999999999999999999999999999887542 2
Q ss_pred HHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCcHHH
Q 006700 431 VTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAI 505 (635)
Q Consensus 431 ~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt--N~~~~l~~~l 505 (635)
...+..++..+.. ...+.||||||+|.+. ...+..|..+ ++ .+.+++|++| |....+++++
T Consensus 74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------~~~q~~LL~~---le--~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFN---------KAQQDALLPH---VE--DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEechhhhC---------HHHHHHHHHH---hh--cCcEEEEEeCCCChhhhccHHH
Confidence 2344455554432 2357899999999873 3444444433 33 2456777655 4455789999
Q ss_pred HccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHH
Q 006700 506 TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 585 (635)
Q Consensus 506 ~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 585 (635)
++|| .++.|++|+.++...++...+..... ++ ..++++.+..|+..+.| |++.
T Consensus 140 ~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~--------------------~~--i~i~~~al~~l~~~s~G----d~R~ 192 (413)
T PRK13342 140 LSRA-QVFELKPLSEEDIEQLLKRALEDKER--------------------GL--VELDDEALDALARLANG----DARR 192 (413)
T ss_pred hccc-eeeEeCCCCHHHHHHHHHHHHHHhhc--------------------CC--CCCCHHHHHHHHHhCCC----CHHH
Confidence 9999 89999999999999999988765321 01 12788999999998876 7777
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 586 LMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 586 L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
+++.++.++.. ...||.+++..++....
T Consensus 193 aln~Le~~~~~--~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 193 ALNLLELAALG--VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHHHHHHc--cCCCCHHHHHHHHhhhh
Confidence 77777776654 45799999999987653
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=8.5e-18 Score=186.68 Aligned_cols=205 Identities=23% Similarity=0.271 Sum_probs=148.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
..+..|+++||++.+.+.|...+.. +..++++||+||+|||||++|+.+|+.+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~-------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN-------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3456899999999999888765532 3334679999999999999999999998541
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.+++.. ......++.+...+. ...++.|++|||+|.|. ....+.|+..+++
T Consensus 83 ~~~~h~DiieIdaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLKtLEE 145 (605)
T PRK05896 83 NTNQSVDIVELDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLKTLEE 145 (605)
T ss_pred HcCCCCceEEecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHHHHHh
Confidence 11222111 112333444444333 22346799999999873 2356788888888
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
++.++++|++|+.+..+.+.+++|| .++.|++|+..+....+...+..... .++
T Consensus 146 Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi-------------------------~Is 199 (605)
T PRK05896 146 PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKI-------------------------KIE 199 (605)
T ss_pred CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8889999999999999999999999 79999999999999999988876543 278
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++++..|+..+.| +.|++..++..+ ..+. + ..||.+++..++
T Consensus 200 ~eal~~La~lS~G-dlR~AlnlLekL--~~y~-~-~~It~e~V~ell 241 (605)
T PRK05896 200 DNAIDKIADLADG-SLRDGLSILDQL--STFK-N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHH--Hhhc-C-CCCCHHHHHHHh
Confidence 8999999999877 555555555533 2333 2 238888777753
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.1e-18 Score=190.06 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=151.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----------------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD----------------- 414 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~----------------- 414 (635)
+.+..|++|||++++.+.|...+.. +..++.+|||||+|||||++|+.|++.+++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 4567899999999999998876552 3344568999999999999999999998653
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.+++.. ......++.+...+. ...++.|+||||+|.|. ...+|.|+..+++
T Consensus 83 ~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~LEe 145 (576)
T PRK14965 83 TEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTLEE 145 (576)
T ss_pred hcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHHHc
Confidence 11222111 112234444444433 23456899999999873 3467888888988
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.+++||++|+.++.|.+.|++|| ..+.|..++..+....+..++.+... .++
T Consensus 146 pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi-------------------------~i~ 199 (576)
T PRK14965 146 PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGI-------------------------SIS 199 (576)
T ss_pred CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCC-------------------------CCC
Confidence 8899999999999999999999999 89999999999999888888876543 388
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 610 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~ 610 (635)
++.+..|+..+.| +.+++..++. +..+|.. ..||.+++..+
T Consensus 200 ~~al~~la~~a~G-~lr~al~~Ld--qliay~g--~~It~edV~~l 240 (576)
T PRK14965 200 DAALALVARKGDG-SMRDSLSTLD--QVLAFCG--DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc--CCCCHHHHHHH
Confidence 9999999999988 4444444443 3444543 35888887766
No 85
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-16 Score=175.90 Aligned_cols=238 Identities=20% Similarity=0.268 Sum_probs=158.7
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----------ch
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------~~ 427 (635)
.+-.|.+.+++++.+.+.-......-..| -++|+||||+|||+|++.||+.+|..|+.+..+.+.+ +.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGp--ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGP--ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCc--EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccc
Confidence 56788999999998866544433332333 4889999999999999999999999999998666533 44
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHH-----HHHHHh---CCCCCCEEEEEEeCCCC
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN-----ALLFRT---GDQSRDIVLVLATNRPG 499 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~-----~ll~~~---~~~~~~viiI~ttN~~~ 499 (635)
|...+.+.+.+..+...+| |++|||||.+...-.+ +.+.+...+|+ .|.+.. .-+-.+|+||+|+|..+
T Consensus 401 GamPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rG-DPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 401 GAMPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRG-DPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred ccCChHHHHHHHHhCCcCC--eEEeechhhccCCCCC-ChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 4556677777777877765 8999999999654222 11223333331 122221 12346899999999999
Q ss_pred CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 500 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 500 ~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
.++..+++|+ ++|.++-++.+|...|.+.||-.......+.. ...+ .++|+++..|.+.+.-=+
T Consensus 478 tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~------------~~el---~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 478 TIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLK------------KGEL---TITDEAIKDIIRYYTREA 541 (782)
T ss_pred cCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCC------------ccce---eecHHHHHHHHHHHhHhh
Confidence 9999999999 99999999999999999888633222000000 1112 388999988886542223
Q ss_pred H-----HHHHHHHHH-HHHHHHcCCCC--ccCHHHHHHHHHHHHh
Q 006700 580 G-----REIAKLMAS-VQAAVYARPDC--VLDSQLFREVVEYKVE 616 (635)
Q Consensus 580 g-----rdI~~L~~~-~q~aa~~s~~~--~lt~~~i~~~l~~~~~ 616 (635)
| |+|.++|.. +...+.+.... .++..++.+.+...+-
T Consensus 542 GVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f 586 (782)
T COG0466 542 GVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVF 586 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCccc
Confidence 3 455555532 22233333332 5788888877765443
No 86
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-17 Score=181.91 Aligned_cols=241 Identities=17% Similarity=0.226 Sum_probs=182.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC----CeeeccCCCcccc-hhhHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----DYAMMTGGDVAPL-GAQAVT 432 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~----~~~~l~~~~~~~~-~~~~~~ 432 (635)
.++|..++.++...+ . ...+.....++||+||+|||||.|++++++++.. .+..++|+.+... ......
T Consensus 408 ~d~i~~~s~kke~~n--~----~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk 481 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN--Q----ELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK 481 (952)
T ss_pred Cceeecchhhhhhhh--h----hcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH
Confidence 667777777776644 1 1122333468999999999999999999999853 3556778776542 223444
Q ss_pred HHHHHHHHHhhcCCcEEEEecCchhhhhhccc-ccCcHHH----HHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHc
Q 006700 433 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNS-IHMSEAQ----RSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 507 (635)
Q Consensus 433 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~-~~~~~~~----~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~ 507 (635)
.+..+|..+..+. |+||+||++|.+++..+. ++..... -.+|+.++.........+.||+|.+....|++.+.+
T Consensus 482 ~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 5677888888777 799999999999873322 2222222 334455555556677778999999999999999887
Q ss_pred --cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHH
Q 006700 508 --RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 585 (635)
Q Consensus 508 --R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 585 (635)
+|+.++.++.|...+|..||+.++.+... +...++++.++..|+||...|+.-
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-------------------------~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLS-------------------------DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhh-------------------------hhhhHHHHHHHHhcCCccchhHHH
Confidence 89999999999999999999999877543 245567777999999999999999
Q ss_pred HHHHHHHHHHc----CCCCccCHHHHHHHHHHHHhhhhhcccccccCCC
Q 006700 586 LMASVQAAVYA----RPDCVLDSQLFREVVEYKVEEHHQRIKLAAEGSQ 630 (635)
Q Consensus 586 L~~~~q~aa~~----s~~~~lt~~~i~~~l~~~~~~~~~~~~l~~~~~~ 630 (635)
++..+-..++. .....+|.++|.+.+..|+|..+|++++.++++-
T Consensus 616 fVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi 664 (952)
T KOG0735|consen 616 FVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGI 664 (952)
T ss_pred HHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCC
Confidence 99766655552 2234899999999999999999999999877653
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.9e-17 Score=180.30 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=149.8
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------------------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------ 414 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------ 414 (635)
.+..|++|||++.++..|...+.. +..++++|||||||||||++|+.+|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 346899999999999988776542 3344579999999999999999999988542
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 487 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~ 487 (635)
++.++|.. ..+.+....+...+........+.|+||||+|.+. ....+.|+..+++.+.
T Consensus 85 ~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 85 SSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLLKTLEEPPQ 150 (451)
T ss_pred hcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHHHHhhcCCC
Confidence 22222211 11222333333333222223457899999999873 2356788888888888
Q ss_pred CEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 488 DIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 488 ~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+++||++||.+..+.+.+.+|+ ..+.|+.++.++...++...+..... .+++++
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~-------------------------~i~~~a 204 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGI-------------------------ETSREA 204 (451)
T ss_pred CceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHH
Confidence 9999999998899999999999 78999999999999988888766443 278999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+..|+..+.| |++.+++.++..+...+ ..||.+++..++
T Consensus 205 l~~L~~~s~g----dlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 205 LLPIARAAQG----SLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 9999999877 66666666665542222 448888776654
No 88
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.77 E-value=7.1e-18 Score=184.09 Aligned_cols=210 Identities=24% Similarity=0.336 Sum_probs=164.2
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee-------------ec
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-------------MM 418 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-------------~l 418 (635)
+.+..|+++||++.+...|...+.. ++-.+.+||+||.|||||++||.+|+.++|.-- .+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 4567899999999999999877664 233346999999999999999999999976421 11
Q ss_pred c-C--CCcccc---hhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 419 T-G--GDVAPL---GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 419 ~-~--~~~~~~---~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
+ | .|+..+ ...+...++.+.+.+. ...++.|.+|||++.|. ...+|.||..+++++.+|
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEEPP~hV 150 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEEPPSHV 150 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhcccccCccCe
Confidence 1 1 122221 1223444555554433 34568999999999873 578999999999999999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|..+..+++.++||| ..+.|...+.++....|..++.+... .++++++.
T Consensus 151 ~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I-------------------------~~e~~aL~ 204 (515)
T COG2812 151 KFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGI-------------------------NIEEDALS 204 (515)
T ss_pred EEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCC-------------------------ccCHHHHH
Confidence 99999999999999999999 89999999999999999998876554 38899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.|++..+| |.||.-.|++ |+.+++. +.||.+.++.++
T Consensus 205 ~ia~~a~G-s~RDalslLD--q~i~~~~--~~It~~~v~~~l 241 (515)
T COG2812 205 LIARAAEG-SLRDALSLLD--QAIAFGE--GEITLESVRDML 241 (515)
T ss_pred HHHHHcCC-ChhhHHHHHH--HHHHccC--CcccHHHHHHHh
Confidence 99999999 9999999998 6666664 567776666544
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.7e-17 Score=181.71 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=149.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe-------------eec
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY-------------AMM 418 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~-------------~~l 418 (635)
..+..|.+++|++.+...|...+.. +..++.+|||||+|||||++|+.+|+.+++.- ..+
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 3456889999999999988776542 23334589999999999999999999986410 001
Q ss_pred cCCC---cc------cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 419 TGGD---VA------PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 419 ~~~~---~~------~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
.++. +. ..+.+....+...+........+.|+||||+|.|. ...++.|+..+++.+.++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEPPPRT 150 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcCCCCe
Confidence 1111 11 01122222333333333334456899999999773 235677888888888889
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
++|++|+.++.+.+.+.+|+ ..+.|++|+.+++..++..++..... .++++++.
T Consensus 151 v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi-------------------------~id~~al~ 204 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKI-------------------------EYEEKALD 204 (486)
T ss_pred EEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999988888999999999 68999999999999999998876543 37889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHH-HHcCCCCccCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAA-VYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~a-a~~s~~~~lt~~~i~~~l~ 612 (635)
.|+..+.| +++.+++.++.+ +++ ...+|.+++..++.
T Consensus 205 ~La~~s~G----~lr~al~~Ldkl~~~~--~~~It~~~V~~~lg 242 (486)
T PRK14953 205 LLAQASEG----GMRDAASLLDQASTYG--EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHcCC----CHHHHHHHHHHHHHhc--CCCcCHHHHHHHhC
Confidence 99999877 455555544443 443 45789888888653
No 90
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=3.5e-17 Score=180.82 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=147.5
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------------------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------ 414 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------ 414 (635)
.+..|++||||+.+.+.|...+.. +..++.+|||||+|+|||++|+.+++.+.+.
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 456899999999999988877642 2334567999999999999999999987431
Q ss_pred ------eeeccCCCcccchhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 415 ------YAMMTGGDVAPLGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 415 ------~~~l~~~~~~~~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
++.+++.. .. ....++.+..... ...++.|++|||+|.|. ...++.||..++++
T Consensus 82 ~~~h~dv~eldaas--~~---gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LEEp 144 (535)
T PRK08451 82 ENRHIDIIEMDAAS--NR---GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLEEP 144 (535)
T ss_pred hcCCCeEEEecccc--cc---CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHhhc
Confidence 11121111 01 1334554444322 22456799999999873 34677888888888
Q ss_pred CCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 486 ~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
+.+++||++|+.+..+.+.+++|+ .+++|.+++.++....+...+..... .+++
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi-------------------------~i~~ 198 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGV-------------------------SYEP 198 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCH
Confidence 889999999999999999999998 89999999999999988888776543 2789
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHcCCCCccCHHHHHHHH
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQA-AVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~-aa~~s~~~~lt~~~i~~~l 611 (635)
+++..|+..+.| +++.+++.++. .++. ...||.+++..++
T Consensus 199 ~Al~~Ia~~s~G----dlR~alnlLdqai~~~--~~~It~~~V~~~l 239 (535)
T PRK08451 199 EALEILARSGNG----SLRDTLTLLDQAIIYC--KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHHHhc--CCCCCHHHHHHHh
Confidence 999999999877 55555555533 3343 3457777666553
No 91
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.1e-17 Score=184.70 Aligned_cols=212 Identities=21% Similarity=0.238 Sum_probs=157.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeecc-------CC---
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT-------GG--- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~-------~~--- 421 (635)
.-+..|++|||++.+++.|.+.+.. +..++++||+||+|||||++|+.||+.+++.....+ |+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 3456899999999999998876552 344567999999999999999999999876432111 11
Q ss_pred -----------Ccccch---hhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 422 -----------DVAPLG---AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 422 -----------~~~~~~---~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++..+. ......++.+++.+.. ...+.|+||||+|.|. ...++.|+..+++
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLEe 158 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLEE 158 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHHh
Confidence 111111 1223455556555432 3457899999999873 2467888888888
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.+++||++|+..+.+.+.+++|| ..+.|..|+.++...++...+..... .++
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi-------------------------~i~ 212 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGV-------------------------EVE 212 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8889999999998888999999999 89999999999999999988876543 388
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
++.+..|+..+.| +.+++..++. +...++ ...||.++|+.++..
T Consensus 213 ~eAl~lIa~~a~G-dlr~al~~Ld--kli~~g--~g~It~e~V~~llg~ 256 (598)
T PRK09111 213 DEALALIARAAEG-SVRDGLSLLD--QAIAHG--AGEVTAEAVRDMLGL 256 (598)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHhhc--CCCcCHHHHHHHhCC
Confidence 9999999999877 6666666654 333443 356999999987753
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.76 E-value=4.5e-17 Score=171.90 Aligned_cols=214 Identities=17% Similarity=0.291 Sum_probs=148.0
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHH
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 431 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~ 431 (635)
..+..|++++|++.+...+...+.. +..++.+||+||||+|||++++++++.++.+++.+++.+ .. .....
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~-~~~i~ 85 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR-IDFVR 85 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc-HHHHH
Confidence 3457889999999999988877651 223345666999999999999999999999999998876 22 11111
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccc
Q 006700 432 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDE 511 (635)
Q Consensus 432 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~ 511 (635)
..+............+.||||||+|.+.. ...+..|..+ ++..+.++.||+|||.+..+.+.+.+|| .
T Consensus 86 ~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~L~~~---le~~~~~~~~Ilt~n~~~~l~~~l~sR~-~ 153 (316)
T PHA02544 86 NRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRHLRSF---MEAYSKNCSFIITANNKNGIIEPLRSRC-R 153 (316)
T ss_pred HHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHHHHHH---HHhcCCCceEEEEcCChhhchHHHHhhc-e
Confidence 11222221111123578999999997621 2233444444 3445667889999999999999999999 6
Q ss_pred eEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 006700 512 VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQ 591 (635)
Q Consensus 512 ~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q 591 (635)
.+.|+.|+.+++..++..++..... .+. ..++ .++++++..++....| |++.+++.++
T Consensus 154 ~i~~~~p~~~~~~~il~~~~~~~~~-------------~~~--~~~~---~i~~~al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQMIVRCKG-------------ILE--AEGV---EVDMKVLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHH-------------HHH--hcCC---CCCHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 8999999999999988877655421 000 1122 2788899999987665 7888888777
Q ss_pred HHHHcCCCCccCHHHHHHHH
Q 006700 592 AAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 592 ~aa~~s~~~~lt~~~i~~~l 611 (635)
..+.. ..++.+++....
T Consensus 212 ~~~~~---~~i~~~~l~~~~ 228 (316)
T PHA02544 212 RYAST---GKIDAGILSEVT 228 (316)
T ss_pred HHHcc---CCCCHHHHHHhh
Confidence 66532 456666555443
No 93
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.1e-17 Score=185.57 Aligned_cols=210 Identities=24% Similarity=0.331 Sum_probs=153.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec---cCC-------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM---TGG------- 421 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l---~~~------- 421 (635)
..+..|++||||+.+.+.|...+.. +..++.+|||||+|||||++|+.+|+.+.+.-... .|+
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 4567899999999999988876652 33445689999999999999999999986632110 010
Q ss_pred ---Ccccchh---hHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEE
Q 006700 422 ---DVAPLGA---QAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLV 492 (635)
Q Consensus 422 ---~~~~~~~---~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI 492 (635)
++..+.+ .....++.+...+.. ..++.|++|||+|.|. ...++.||..+++++..+++|
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcCCCceEEE
Confidence 1110111 123445555554442 3457899999999873 246888999999888999999
Q ss_pred EEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHH
Q 006700 493 LATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 572 (635)
Q Consensus 493 ~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 572 (635)
++|+.++.+.+.+++|| .++.|.+|+.++...++...+..... .++++++..|+
T Consensus 153 LaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI-------------------------~id~eAl~~LA 206 (725)
T PRK07133 153 LATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENI-------------------------SYEKNALKLIA 206 (725)
T ss_pred EEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHH
Confidence 99999999999999999 79999999999999999888776543 27888999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 573 RKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 573 ~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
..+.| +.|++..++..+ +.++ ...||.+++..++
T Consensus 207 ~lS~G-slR~AlslLekl--~~y~--~~~It~e~V~ell 240 (725)
T PRK07133 207 KLSSG-SLRDALSIAEQV--SIFG--NNKITLKNVEELF 240 (725)
T ss_pred HHcCC-CHHHHHHHHHHH--HHhc--cCCCCHHHHHHHH
Confidence 99877 555666555533 2343 2348888777653
No 94
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=6.5e-17 Score=174.27 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=150.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc-------c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-------A 424 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~-------~ 424 (635)
..+..|+++||++.+.+.+...+.. +..++++|||||||+|||++|+.+++.+.++.....+.++ .
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 3456889999999998888766542 3345689999999999999999999998653221111110 0
Q ss_pred cchhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006700 425 PLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 425 ~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l 501 (635)
.........+..++..+.. ..++.||||||+|.+. . ..++.++..++..+..+++|++|+.+..+
T Consensus 84 ~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~---------~---~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS---------S---AAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC---------H---HHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 0111223455555554432 2346799999999773 1 24667777777777788899999888999
Q ss_pred cHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 502 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 502 ~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+++.+|+ .++.|++|+.++...++...+.+... .++++++..|+..+.|
T Consensus 152 ~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~-------------------------~i~~~al~~l~~~~~g---- 201 (367)
T PRK14970 152 IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGI-------------------------KFEDDALHIIAQKADG---- 201 (367)
T ss_pred CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhCCC----
Confidence 99999999 78999999999999999888876543 2789999999998876
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
|++.+++.++..+...+.. ||.+++..++.
T Consensus 202 dlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 202 ALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred CHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 6666666665554333333 88888887765
No 95
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.76 E-value=1.5e-17 Score=169.07 Aligned_cols=219 Identities=22% Similarity=0.329 Sum_probs=150.6
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC---eeeccCCCcccchhhH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAPLGAQA 430 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~---~~~l~~~~~~~~~~~~ 430 (635)
++.++++||++++... ..++..... ....++++||||||||||++|+.|+.....+ |+.++... ..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ie----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~------a~ 202 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIE----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN------AK 202 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHH----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc------cc
Confidence 4567899999888766 333332221 2223479999999999999999999988665 55444332 33
Q ss_pred HHHHHHHHHHHhh----cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCcHH
Q 006700 431 VTKIHEIFDWAKK----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSA 504 (635)
Q Consensus 431 ~~~l~~~f~~a~~----~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt--N~~~~l~~~ 504 (635)
...++++|..+++ .++..|||||||+.|. ..+++.|...+ ..+.|.+|++| |+.-.++.+
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN---------ksQQD~fLP~V-----E~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN---------KSQQDTFLPHV-----ENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh---------hhhhhccccee-----ccCceEEEecccCCCccchhHH
Confidence 4567777777664 2346899999999983 44444443333 46778899866 555689999
Q ss_pred HHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHH
Q 006700 505 ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 584 (635)
Q Consensus 505 l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 584 (635)
+++|| .++.+...+.+....||.+-+.-+.. ...... ++ +.. ...+++..++.|+..++| |-+
T Consensus 269 LlSRC-~VfvLekL~~n~v~~iL~raia~l~d-ser~~~--~l-------~n~--s~~ve~siidyla~lsdG----DaR 331 (554)
T KOG2028|consen 269 LLSRC-RVFVLEKLPVNAVVTILMRAIASLGD-SERPTD--PL-------PNS--SMFVEDSIIDYLAYLSDG----DAR 331 (554)
T ss_pred HHhcc-ceeEeccCCHHHHHHHHHHHHHhhcc-ccccCC--CC-------CCc--chhhhHHHHHHHHHhcCc----hHH
Confidence 99999 88899999999999999886654432 100000 00 000 012788899999999999 888
Q ss_pred HHHHHHHHHH--Hc-----CCCCccCHHHHHHHHHHH
Q 006700 585 KLMASVQAAV--YA-----RPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 585 ~L~~~~q~aa--~~-----s~~~~lt~~~i~~~l~~~ 614 (635)
..+|+++.++ .. +.+..|+.+|+.+.+...
T Consensus 332 ~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 332 AALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 8888887762 22 234589999999988753
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.76 E-value=5.1e-17 Score=172.78 Aligned_cols=209 Identities=21% Similarity=0.291 Sum_probs=147.5
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC-----CCeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-----~~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++.+.+.|..++.. ...+++||+||||||||++|+++++.+. .+++.+++.++....
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS--------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 345689999999999988776542 1123699999999999999999999884 245667765532100
Q ss_pred --------------h-------hHHHHHHHHHHHHhhc----CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh
Q 006700 428 --------------A-------QAVTKIHEIFDWAKKS----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 482 (635)
Q Consensus 428 --------------~-------~~~~~l~~~f~~a~~~----~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~ 482 (635)
+ .....+..+..+.... ..+.+|||||+|.+. ......|..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~---------~~~~~~L~~~l--- 149 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR---------EDAQQALRRIM--- 149 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC---------HHHHHHHHHHH---
Confidence 0 0112233333232221 235699999999773 33334444444
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 483 GDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 483 ~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
+....++.||++++.+..+.+.+.+|+ ..+.|++|+.+++..++...+..... .
T Consensus 150 e~~~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~-------------------------~ 203 (337)
T PRK12402 150 EQYSRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGV-------------------------D 203 (337)
T ss_pred HhccCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------C
Confidence 333445678888887778888899998 78999999999999999988776543 2
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 563 LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 563 ~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
++++++..|+..+.| |++.+++.++.++... ..||.+++..++..
T Consensus 204 ~~~~al~~l~~~~~g----dlr~l~~~l~~~~~~~--~~It~~~v~~~~~~ 248 (337)
T PRK12402 204 YDDDGLELIAYYAGG----DLRKAILTLQTAALAA--GEITMEAAYEALGD 248 (337)
T ss_pred CCHHHHHHHHHHcCC----CHHHHHHHHHHHHHcC--CCCCHHHHHHHhCC
Confidence 789999999998866 8888888888777433 47999998887664
No 97
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.75 E-value=1.3e-16 Score=185.25 Aligned_cols=231 Identities=19% Similarity=0.237 Sum_probs=149.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----------ch
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------~~ 427 (635)
.+.+|.+.+++++...+........ .....++|+||||||||++++.+|..++.+|+.++.+.+.. +.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~--~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNK--IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhccc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccC
Confidence 4589999999999876654332221 12236999999999999999999999999998887665432 11
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH------------hCCCCCCEEEEEEe
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR------------TGDQSRDIVLVLAT 495 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~------------~~~~~~~viiI~tt 495 (635)
+...+.+...+..+... +.||||||+|.+.+.... .....|..++.. +..+..+++||+|+
T Consensus 400 g~~~G~~~~~l~~~~~~--~~villDEidk~~~~~~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 400 GSMPGKLIQKMAKVGVK--NPLFLLDEIDKMSSDMRG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred CCCCcHHHHHHHhcCCC--CCEEEEEChhhcccccCC-----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 22233444444443322 348999999998643221 112233333321 01134789999999
Q ss_pred CCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH-
Q 006700 496 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK- 574 (635)
Q Consensus 496 N~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~- 574 (635)
|.. .++++|++|| .+|.|+.++.++...|++.++........+.. ...+ .++++++..|+..
T Consensus 473 N~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~------------~~~l---~i~~~ai~~ii~~y 535 (784)
T PRK10787 473 NSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALK------------KGEL---TVDDSAIIGIIRYY 535 (784)
T ss_pred CCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCC------------CCeE---EECHHHHHHHHHhC
Confidence 987 5999999999 78999999999999999999852211000000 1112 2889999999853
Q ss_pred cCCCCHHHHHHHHHHHHHHHH-----cC--CCCccCHHHHHHHHHHH
Q 006700 575 TEGFSGREIAKLMASVQAAVY-----AR--PDCVLDSQLFREVVEYK 614 (635)
Q Consensus 575 t~G~sgrdI~~L~~~~q~aa~-----~s--~~~~lt~~~i~~~l~~~ 614 (635)
+..+..|.|+.++..+..... .. ..-.||.+++.+.+...
T Consensus 536 t~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 536 TREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 345566788777754432222 11 12368888888877644
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.75 E-value=6.5e-17 Score=173.38 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=149.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--ccC----------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTG---------- 420 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~--l~~---------- 420 (635)
.+..|+++||++.+++.|...+.. +..++.+|||||||+|||++|+.+++.+.++-.. ..|
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 456789999999999988876542 3344579999999999999999999997543100 000
Q ss_pred ----CCcccch---hhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 006700 421 ----GDVAPLG---AQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 490 (635)
Q Consensus 421 ----~~~~~~~---~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vi 490 (635)
.++..+. ......+..++..+.. ...+.||+|||+|.+. ...++.++..++..+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHHHHhCCcccee
Confidence 0111111 1123345556655443 2345799999999773 2356777888877778899
Q ss_pred EEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHH
Q 006700 491 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE 570 (635)
Q Consensus 491 iI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 570 (635)
+|++||.++.+.+.+.+|+ ..+.|++|+.++...++..++..... .++++++..
T Consensus 150 lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~-------------------------~i~~~a~~~ 203 (355)
T TIGR02397 150 FILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGI-------------------------KIEDEALEL 203 (355)
T ss_pred EEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHH
Confidence 9999998888889999999 78999999999999999998876543 278899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 571 AARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 571 la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
|+..+.| +++.+.+.++.++.... ..||.+++.+++.
T Consensus 204 l~~~~~g----~~~~a~~~lekl~~~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 204 IARAADG----SLRDALSLLDQLISFGN-GNITYEDVNELLG 240 (355)
T ss_pred HHHHcCC----ChHHHHHHHHHHHhhcC-CCCCHHHHHHHhC
Confidence 9998877 55555555544433222 4589998887764
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=7.2e-17 Score=175.27 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=147.4
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee----------eccCC-
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA----------MMTGG- 421 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~----------~l~~~- 421 (635)
.+..|++||||+.+++.|...+.. +..++.+||+||||||||++|+.+|+.+.+.-. .-.|+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 456789999999999988776552 333456999999999999999999999876310 00111
Q ss_pred -------------Ccccchh---hHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh
Q 006700 422 -------------DVAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 482 (635)
Q Consensus 422 -------------~~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~ 482 (635)
++..+.+ .....+..+...+ .....+.|+||||+|.+. . ...+.|+..+
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------~---~~~~~LLk~L 151 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------I---AAFNAFLKTL 151 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------H---HHHHHHHHHH
Confidence 1111111 1133444444443 233456799999999873 2 3456677777
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 483 GDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 483 ~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
++.+..++||++++.+..+.+.+.+|+ .++.|++++.++....+...+..... .
T Consensus 152 Eep~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~-------------------------~ 205 (397)
T PRK14955 152 EEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGI-------------------------S 205 (397)
T ss_pred hcCCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCC-------------------------C
Confidence 877788889988888888999999999 78999999999999888888765432 3
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHc---CCCCccCHHHHHHHH
Q 006700 563 LSDNVIQEAARKTEGFSGREIAKLMASVQAA-VYA---RPDCVLDSQLFREVV 611 (635)
Q Consensus 563 ~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a-a~~---s~~~~lt~~~i~~~l 611 (635)
++++.+..|+..+.| +++.+.+.++.+ +|. .....||.+++..++
T Consensus 206 i~~~al~~l~~~s~g----~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 206 VDADALQLIGRKAQG----SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 899999999999877 455444444433 232 234578998887765
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.1e-16 Score=179.61 Aligned_cols=210 Identities=22% Similarity=0.265 Sum_probs=150.5
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee--ec-----------
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MM----------- 418 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--~l----------- 418 (635)
..+..|++||||+.+...|...+.. +..++.+|||||||+|||++|++||+.+++.-- ..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 4566899999999999988876652 233456999999999999999999999865310 00
Q ss_pred -cC--CCcccchh---hHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 419 -TG--GDVAPLGA---QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 419 -~~--~~~~~~~~---~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
++ .++..+.+ .....+..+...+. ...++.|+||||+|.|. ...++.|+..+++.+..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LEepp~~~ 150 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIEEPPPYI 150 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhccCCCCE
Confidence 01 01111111 12234444433222 23457899999999873 346788888898888999
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++|+.+..+.+.+.+|| ..+.|.+++.+++..++...+..... .++++++.
T Consensus 151 vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi-------------------------~id~eAl~ 204 (563)
T PRK06647 151 VFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQI-------------------------KYEDEALK 204 (563)
T ss_pred EEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999998889999999999 78999999999999888887765432 27899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.|+..+.| +.|++..++.. ..++.. ..+|.+++..++
T Consensus 205 lLa~~s~G-dlR~alslLdk--lis~~~--~~It~e~V~~ll 241 (563)
T PRK06647 205 WIAYKSTG-SVRDAYTLFDQ--VVSFSD--SDITLEQIRSKM 241 (563)
T ss_pred HHHHHcCC-CHHHHHHHHHH--HHhhcC--CCCCHHHHHHHh
Confidence 99999877 55555555542 234432 458888777754
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=7.5e-17 Score=187.78 Aligned_cols=225 Identities=19% Similarity=0.223 Sum_probs=160.6
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~ 424 (635)
..++.+||.++....+..++.. ....|+||+||||||||++++.||..+ +..++.++++.+.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 3568999999888876654421 123479999999999999999999987 5667777766553
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
.+.++....+..+|+.+... .++||||||+|.|++.....+.+....+.|...+ ..+.+.+|++||..+
T Consensus 251 a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-----~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 251 AGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-----SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred hhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-----hCCCeEEEEecCHHHHH
Confidence 24567778899999988655 4789999999999876443221223344444443 356799999998633
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
..|+++.+|| ..|.|+.|+.+++..||+.....+.. ...+ .++++++..++..+.
T Consensus 325 ~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~------------------~~~v---~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 325 NHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEE------------------FHHV---KYSDEALEAAVELSA 382 (731)
T ss_pred HHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHh------------------ccCc---ccCHHHHHHHHHhhh
Confidence 5799999999 58999999999999999988776532 1122 389999999998887
Q ss_pred CCCHH-----HHHHHHHHHHHHHHcC----CCCccCHHHHHHHHHHHH
Q 006700 577 GFSGR-----EIAKLMASVQAAVYAR----PDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 577 G~sgr-----dI~~L~~~~q~aa~~s----~~~~lt~~~i~~~l~~~~ 615 (635)
.|-+. ---.|++.+.+.+... ....||.++|..++....
T Consensus 383 ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 383 RYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred cccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 76432 2233444333322222 234689999999998875
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.8e-16 Score=178.83 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=149.9
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee----------ccC-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM----------MTG- 420 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~----------l~~- 420 (635)
..+..|++||||+.+...|...+.. +.-++.+||+||+|||||++|+.||+.+.+..-. -.|
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 3456899999999999988775442 2334569999999999999999999999763100 011
Q ss_pred -----------CC--cccchh---hHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH
Q 006700 421 -----------GD--VAPLGA---QAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 481 (635)
Q Consensus 421 -----------~~--~~~~~~---~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~ 481 (635)
.+ +..+.+ .....+..+.... .....+.|+||||+|.|. ....+.|+..
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~naLLK~ 150 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNAFLKT 150 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHHHHHH
Confidence 11 111111 1133444444333 233456799999999873 2357788888
Q ss_pred hCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhcc
Q 006700 482 TGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 561 (635)
Q Consensus 482 ~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (635)
+++.+..++||++|+.+..+.+.|.+|+ .++.|..++.++....+...+.....
T Consensus 151 LEePp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi------------------------- 204 (620)
T PRK14954 151 LEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGI------------------------- 204 (620)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCC-------------------------
Confidence 8888888999998888889999999999 89999999999998888887765433
Q ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHc---CCCCccCHHHHHHHH
Q 006700 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQAA-VYA---RPDCVLDSQLFREVV 611 (635)
Q Consensus 562 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a-a~~---s~~~~lt~~~i~~~l 611 (635)
.++++++..|+..+.| +++.+++.++.. .|. .....||.+++.+++
T Consensus 205 ~I~~eal~~La~~s~G----dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 205 QIDADALQLIARKAQG----SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 3899999999999877 444444444332 332 124678888887766
No 103
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.74 E-value=1.8e-16 Score=178.07 Aligned_cols=221 Identities=19% Similarity=0.225 Sum_probs=159.5
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcccc
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPL 426 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~~~ 426 (635)
-+.+++.++-.+.|..++...... ..|...++|+|+||||||++++.+.+.+ ...|++++|..+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 367778777777777666544322 2233345799999999999999998776 245788888653321
Q ss_pred ------------------hhhHHHHHHHHHHHHhh-cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCC
Q 006700 427 ------------------GAQAVTKIHEIFDWAKK-SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR 487 (635)
Q Consensus 427 ------------------~~~~~~~l~~~f~~a~~-~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~ 487 (635)
+......+..+|..... .....||+|||||.|... .+.+|..|+........
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~S 901 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINS 901 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCC
Confidence 11223445556655422 333569999999998632 24567666666555566
Q ss_pred CEEEEEEeCC---CCCCcHHHHccccc-eEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCC
Q 006700 488 DIVLVLATNR---PGDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 563 (635)
Q Consensus 488 ~viiI~ttN~---~~~l~~~l~~R~d~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (635)
.++||+++|. +..+++.+.+||.. .+.|++|+.+++..||...+..... .+
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~g-------------------------VL 956 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKE-------------------------II 956 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCC-------------------------CC
Confidence 7999999985 55778899999864 4899999999999999998865311 28
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 564 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 564 ~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
+++++..+|......+| |++.+++.++.++...+...|+.++|.+++....
T Consensus 957 dDdAIELIArkVAq~SG-DARKALDILRrAgEikegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 957 DHTAIQLCARKVANVSG-DIRKALQICRKAFENKRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred CHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH
Confidence 89999999986554444 9999999999888776677899999999987654
No 104
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.8e-16 Score=169.87 Aligned_cols=171 Identities=23% Similarity=0.269 Sum_probs=123.0
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----------ch
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------~~ 427 (635)
++-.|-+++++++.+++.-..... ....+.+.|+||||+|||++++.||+.+|..|++++.+.+.+ +.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYV 488 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYV 488 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeee
Confidence 667889999999988765433211 122235889999999999999999999999999997665433 33
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHH-----HHHHHhC---CCCCCEEEEEEeCCCC
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN-----ALLFRTG---DQSRDIVLVLATNRPG 499 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~-----~ll~~~~---~~~~~viiI~ttN~~~ 499 (635)
+...+.+-+.+......+| +++|||||.+..... ++.+.+...+|+ .|++.+- -+-.+|+||||.|..+
T Consensus 489 GAMPGkiIq~LK~v~t~NP--liLiDEvDKlG~g~q-GDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id 565 (906)
T KOG2004|consen 489 GAMPGKIIQCLKKVKTENP--LILIDEVDKLGSGHQ-GDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID 565 (906)
T ss_pred ccCChHHHHHHHhhCCCCc--eEEeehhhhhCCCCC-CChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc
Confidence 4455666677777766664 888999999973221 111222222221 1222211 1335789999999999
Q ss_pred CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhh
Q 006700 500 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 534 (635)
Q Consensus 500 ~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~ 534 (635)
.|++.+++|+ ++|+++-+..+|...|.+.||-..
T Consensus 566 tIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~ 599 (906)
T KOG2004|consen 566 TIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQ 599 (906)
T ss_pred cCChhhhhhh-heeeccCccHHHHHHHHHHhhhhH
Confidence 9999999999 999999999999999999987543
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.74 E-value=9.3e-17 Score=184.24 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=146.0
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+.+|+++||++.+......+...+... ...++|||||||||||++|+++++.++.+|+.+++.... ...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~-----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD-----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------VKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------hHH
Confidence 467899999999886433333333322 234799999999999999999999999999888775311 112
Q ss_pred HHHHHHHH----hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC--CCCCCcHHHHc
Q 006700 434 IHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN--RPGDLDSAITD 507 (635)
Q Consensus 434 l~~~f~~a----~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN--~~~~l~~~l~~ 507 (635)
+...+..+ .....+.||||||+|.|. ...+..|.. .++ .+.+++|++|+ ....+++++++
T Consensus 93 ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln---------~~qQdaLL~---~lE--~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 LRAEVDRAKERLERHGKRTILFIDEVHRFN---------KAQQDALLP---WVE--NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEeChhhCC---------HHHHHHHHH---Hhc--CceEEEEEecCCChHhhhhhHhhc
Confidence 22222222 122346799999999873 344444433 333 34567777553 34568899999
Q ss_pred cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 006700 508 RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLM 587 (635)
Q Consensus 508 R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 587 (635)
|+ .++.|++++.+++..|++.++..... .-+ ...+ .++++++..|+..+.| |++.++
T Consensus 159 R~-~v~~l~pLs~edi~~IL~~~l~~~~~-~~g--------------~~~v---~I~deaL~~La~~s~G----D~R~ll 215 (725)
T PRK13341 159 RS-RLFRLKSLSDEDLHQLLKRALQDKER-GYG--------------DRKV---DLEPEAEKHLVDVANG----DARSLL 215 (725)
T ss_pred cc-cceecCCCCHHHHHHHHHHHHHHHHh-hcC--------------Cccc---CCCHHHHHHHHHhCCC----CHHHHH
Confidence 98 78999999999999999998875321 000 0011 3899999999998866 888888
Q ss_pred HHHHHHHHcC---CC--CccCHHHHHHHHHHH
Q 006700 588 ASVQAAVYAR---PD--CVLDSQLFREVVEYK 614 (635)
Q Consensus 588 ~~~q~aa~~s---~~--~~lt~~~i~~~l~~~ 614 (635)
+.++.++... .. ..||.+++.+++...
T Consensus 216 n~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 216 NALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 8888776532 11 237888888887663
No 106
>PRK06893 DNA replication initiation factor; Validated
Probab=99.73 E-value=2.7e-16 Score=158.28 Aligned_cols=211 Identities=13% Similarity=0.166 Sum_probs=134.2
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~ 427 (635)
..+..+|+++++.++.. .+..+...... ...+.++||||||||||+|++++|+++ +....+++......
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~~~-----~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-- 80 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNFID-----LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-- 80 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHhhc-----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--
Confidence 35667899999877543 22222222211 122358999999999999999999886 23333333321110
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCCC---cH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGDL---DS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~l---~~ 503 (635)
....++.. .....+|+|||++.+.+. ......|..++....+. +..++|+|+| .|..+ .+
T Consensus 81 -----~~~~~~~~---~~~~dlLilDDi~~~~~~-------~~~~~~l~~l~n~~~~~-~~~illits~~~p~~l~~~~~ 144 (229)
T PRK06893 81 -----FSPAVLEN---LEQQDLVCLDDLQAVIGN-------EEWELAIFDLFNRIKEQ-GKTLLLISADCSPHALSIKLP 144 (229)
T ss_pred -----hhHHHHhh---cccCCEEEEeChhhhcCC-------hHHHHHHHHHHHHHHHc-CCcEEEEeCCCChHHccccch
Confidence 11122222 224579999999987432 12223344444444322 3345566665 45544 38
Q ss_pred HHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+|+. .++.+++|+.+++..|++..+..... .++++++.+|+.++.| +.|
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-------------------------~l~~~v~~~L~~~~~~-d~r 198 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-------------------------ELSDEVANFLLKRLDR-DMH 198 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHH
Confidence 8999873 68899999999999999988765432 3899999999999877 566
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.+..+++.+..++.. ....||...+++++.
T Consensus 199 ~l~~~l~~l~~~~~~-~~~~it~~~v~~~L~ 228 (229)
T PRK06893 199 TLFDALDLLDKASLQ-AQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCHHHHHHHhc
Confidence 666666665544443 345799999998874
No 107
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.73 E-value=1.4e-16 Score=178.49 Aligned_cols=212 Identities=19% Similarity=0.229 Sum_probs=149.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCC
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGD 422 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~ 422 (635)
.+..|++++|++...+.+...+. ...+.++||+||||||||++|+++++.+ +.+|+.++|..
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~--------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC--------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh--------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 44789999999999988875321 1223579999999999999999998753 35788888753
Q ss_pred c--cc--chhhHHHH--------------------HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHH
Q 006700 423 V--AP--LGAQAVTK--------------------IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNAL 478 (635)
Q Consensus 423 ~--~~--~~~~~~~~--------------------l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~l 478 (635)
. .. +.....+. ..+.+ ....+++|||||++.| +...+..|..+
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l----~~a~gG~L~IdEI~~L---------~~~~q~~LL~~ 198 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV----TRAHGGVLFIDEIGEL---------HPVQMNKLLKV 198 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchh----hccCCcEEEEechhhC---------CHHHHHHHHHH
Confidence 1 10 00000000 00111 1234689999999988 45556665555
Q ss_pred HHHhC-------------------------CCCCCEEEEE-EeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHH
Q 006700 479 LFRTG-------------------------DQSRDIVLVL-ATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLK 532 (635)
Q Consensus 479 l~~~~-------------------------~~~~~viiI~-ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~ 532 (635)
+..-. ..+.++++|+ |+|.++.+++++++|| ..+.|++++.+++..|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 54310 1123556665 4568999999999999 7889999999999999999887
Q ss_pred hhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 533 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
+... .+++++++.|+.++ +++|++.+++..+...+...+...||.+|+..++.
T Consensus 278 k~~i-------------------------~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 278 KIGI-------------------------NLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HcCC-------------------------CcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 6543 38899999988764 58888888887666555555667899999999986
Q ss_pred H
Q 006700 613 Y 613 (635)
Q Consensus 613 ~ 613 (635)
.
T Consensus 331 ~ 331 (531)
T TIGR02902 331 N 331 (531)
T ss_pred C
Confidence 3
No 108
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=2.3e-16 Score=166.34 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=145.3
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-----CeeeccCCCcccchh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLGA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-----~~~~l~~~~~~~~~~ 428 (635)
+..|++++|++++...+...+.. ...+++||+||||||||++++.+++.+.. .++.+++++... .
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~--------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~--~ 82 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE--------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG--I 82 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc--h
Confidence 35789999999999888876541 11236999999999999999999998733 344444333211 1
Q ss_pred hHHHHHHHH-HHHHhhc----CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcH
Q 006700 429 QAVTKIHEI-FDWAKKS----KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 429 ~~~~~l~~~-f~~a~~~----~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~ 503 (635)
..+... ...+... ..+.||+|||+|.+. ...+. .|+..++....++.+|+++|.+..+.+
T Consensus 83 ---~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~---------~~~~~---~L~~~le~~~~~~~lIl~~~~~~~l~~ 147 (319)
T PRK00440 83 ---DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT---------SDAQQ---ALRRTMEMYSQNTRFILSCNYSSKIID 147 (319)
T ss_pred ---HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC---------HHHHH---HHHHHHhcCCCCCeEEEEeCCccccch
Confidence 111111 1122111 235699999999873 22233 344444555566788999998888888
Q ss_pred HHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHH
Q 006700 504 AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 583 (635)
Q Consensus 504 ~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 583 (635)
.+.+|+ .++.|++|+.++...++..++..... .++++++..|+..+.| |+
T Consensus 148 ~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~-------------------------~i~~~al~~l~~~~~g----d~ 197 (319)
T PRK00440 148 PIQSRC-AVFRFSPLKKEAVAERLRYIAENEGI-------------------------EITDDALEAIYYVSEG----DM 197 (319)
T ss_pred hHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CH
Confidence 999999 67999999999999999998876543 3889999999998877 78
Q ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 584 AKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 584 ~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
+.+++.++.++.. ...||.+++..++....
T Consensus 198 r~~~~~l~~~~~~--~~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 198 RKAINALQAAAAT--GKEVTEEAVYKITGTAR 227 (319)
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHhCCCC
Confidence 8888877776654 35789998888775443
No 109
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.5e-16 Score=174.93 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=167.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI 465 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~ 465 (635)
...+||+|+||||||++++++|.++|.+++.++|..+.. ........+..+|..++... |+||||-++|.|..+.+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dg- 508 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDG- 508 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCC-
Confidence 347999999999999999999999999999999998764 56678889999999998876 799999999998755444
Q ss_pred cCcHHHHHHHHHHHH-HhC-CCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 006700 466 HMSEAQRSALNALLF-RTG-DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSS 543 (635)
Q Consensus 466 ~~~~~~~~~L~~ll~-~~~-~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~ 543 (635)
+..-....+++.++. ... .....++||+|++..+.+++.+++-|-..|.++.|+.++|.+||+.|+.....
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~------- 581 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL------- 581 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc-------
Confidence 333445556666665 121 35668999999999999999999999899999999999999999999987654
Q ss_pred ccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHcC----------------CCCccC
Q 006700 544 SLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA----VYAR----------------PDCVLD 603 (635)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a----a~~s----------------~~~~lt 603 (635)
-.+..+..++.+|.|||.+|+..++..+-.+ +..+ ....+|
T Consensus 582 -------------------n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 582 -------------------NQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLT 642 (953)
T ss_pred -------------------chHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceec
Confidence 3456788999999999999999998543111 1111 125789
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 006700 604 SQLFREVVEYKVEEHHQRI 622 (635)
Q Consensus 604 ~~~i~~~l~~~~~~~~~~~ 622 (635)
.+||.++++....++..-+
T Consensus 643 ~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 643 EEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 9999999998777665544
No 110
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.9e-16 Score=176.95 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=147.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee----ccCC-------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM----MTGG------- 421 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~----l~~~------- 421 (635)
.+..|++++|++.+...|...+.. +...+++||+||+|||||++|+.+|+.+++.... ..|+
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~-------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS-------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 346789999999999998877653 2233579999999999999999999998763211 0111
Q ss_pred -------Cccc---chhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 006700 422 -------DVAP---LGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 488 (635)
Q Consensus 422 -------~~~~---~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~ 488 (635)
++.. ........+++++..+.. ...+.|+||||+|.|. ...++.||..+++.+.+
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLEEPPPR 151 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHhcCCcC
Confidence 1111 111334566666665543 2456899999999873 24677888888888889
Q ss_pred EEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHH
Q 006700 489 IVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 568 (635)
Q Consensus 489 viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 568 (635)
++||++|+.+..+.+.+++|| ..+.|..++.++....+...+.+... .++++.+
T Consensus 152 tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi-------------------------~is~~al 205 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESI-------------------------EIEPEAL 205 (620)
T ss_pred eEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHHH
Confidence 999999998889999999999 88999999999888888777765433 2788899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 006700 569 QEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 610 (635)
Q Consensus 569 ~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~ 610 (635)
..|+..+.| +++.+++.++...... ..||.+++..+
T Consensus 206 ~~La~~s~G----~lr~A~~lLeklsL~~--~~It~e~V~~l 241 (620)
T PRK14948 206 TLVAQRSQG----GLRDAESLLDQLSLLP--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHhcc--CCCCHHHHHHH
Confidence 999999877 4444444444332222 34776666544
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.5e-16 Score=177.56 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=147.6
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec---cC---------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM---TG--------- 420 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l---~~--------- 420 (635)
.+..|++|||++.+++.|...+.. +...+.+|||||+|||||++|+.||+.+++....- .|
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 456789999999999998776553 22334589999999999999999999986432100 00
Q ss_pred -----CCcccch---hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCE
Q 006700 421 -----GDVAPLG---AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDI 489 (635)
Q Consensus 421 -----~~~~~~~---~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~v 489 (635)
.++..+. ......++.+...+. ....+.||||||+|.|. ...++.|+..+++.+.++
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTLEEPPPHA 151 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHHhcCCCCe
Confidence 0111001 111223333333322 23456899999999873 245777888888877889
Q ss_pred EEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 490 VLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 490 iiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
+||++++..+.+.+.+.+|+ ..+.|+.++..+...++..++..... .++++.+.
T Consensus 152 v~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl-------------------------~i~~eal~ 205 (585)
T PRK14950 152 IFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGI-------------------------NLEPGALE 205 (585)
T ss_pred EEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHH
Confidence 99999988888989999999 78999999999999988888776543 27889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.|+..+.| +.+++.+++..+. .|. +..||.+++..++.
T Consensus 206 ~La~~s~G-dlr~al~~LekL~--~y~--~~~It~e~V~~ll~ 243 (585)
T PRK14950 206 AIARAATG-SMRDAENLLQQLA--TTY--GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH--Hhc--CCCCCHHHHHHHhc
Confidence 99999877 5555555555332 232 35689888877544
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=1.7e-16 Score=170.77 Aligned_cols=160 Identities=23% Similarity=0.305 Sum_probs=116.0
Q ss_pred cCCccccChHHHHHHHHHHHHHhcc--cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee---------------ec
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANT--KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA---------------MM 418 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~--~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~---------------~l 418 (635)
.|++|+|++.+++.|...+..-... ..+...++.+||+||||+|||++|+.+|+.+.+... .-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 5799999999999999887753321 111224567999999999999999999998755321 00
Q ss_pred cCCCcccc----hhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 006700 419 TGGDVAPL----GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 491 (635)
Q Consensus 419 ~~~~~~~~----~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vii 491 (635)
+.+++..+ ..-....++.++..+.. ..++.|+||||+|.|. . ...|.||..+++.+.++++
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~---------~---~aanaLLk~LEep~~~~~f 150 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT---------E---RAANALLKAVEEPPPRTVW 150 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC---------H---HHHHHHHHHhhcCCCCCeE
Confidence 11111111 01123456666666543 2356799999999883 2 2457788888888888899
Q ss_pred EEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHH
Q 006700 492 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 528 (635)
Q Consensus 492 I~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~ 528 (635)
|++|+.++.+.|.++||| ..+.|++|+.++...++.
T Consensus 151 IL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 151 LLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 999988999999999999 899999999998777665
No 113
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-15 Score=154.48 Aligned_cols=213 Identities=17% Similarity=0.123 Sum_probs=160.4
Q ss_pred HHHHHHhhhhcccccccCCCCccCC--CCCCCCCCCCCCCcchhhhhccCC-CCCCCCC-CCCCCchhhhHHH--HHHHH
Q 006700 12 VAAAVASLSTASNRAFADAPSRFSF--FSSSPQPTSSGNDEAEQTADAQKS-REPEEPR-GSGFDPEALERAA--KALRE 85 (635)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~fd~~~ler~a--~~~~~ 85 (635)
+++++.++++.|.....+.+|++|+ ||+||++||||-||..+..+.... ...+.|+ ++.-...+|++.+ +|++.
T Consensus 5 c~a~~i~a~~~S~~~~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaLERaAKA 84 (630)
T KOG0742|consen 5 CAAGSISALAMSWLFGINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEALERAAKA 84 (630)
T ss_pred HHHHHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHHHHHHHH
Confidence 4444444455555556666999996 888887777665655543222211 1222233 6666777999999 99999
Q ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 006700 86 FNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTD 165 (635)
Q Consensus 86 l~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~~~~~d~l~r~~~q~e 165 (635)
|+..+|+.++ .+.+|..+.+|.+ +++|+.+...+++..+++.+.|..|+.+++|.+.-++.+|.+.+ |-+||++
T Consensus 85 lrein~s~~a---K~vfel~r~qE~T-rq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q--~arYqD~ 158 (630)
T KOG0742|consen 85 LREINHSPYA---KDVFELARMQEQT-RQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQ--RARYQDK 158 (630)
T ss_pred HHhhccCccH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999 9999999999999 89999999999999999999999999999999998888776665 5589999
Q ss_pred HHHHHHhcchh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 006700 166 HEAQRRHNTEL--VKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAE---AEGRAHEAKL 234 (635)
Q Consensus 166 ~e~~~~~~e~~--~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~k~~~E---~~~~~~~~~~ 234 (635)
+.+++.+.+.. ..+.++++..||+ ...+.+..++.++++...+++++++.+.+.| .+.++..+++
T Consensus 159 larkr~~~e~e~qr~~n~ElvrmQEe----S~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 159 LARKRYEDELEAQRRLNEELVRMQEE----SVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHH----HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 99998875533 2344555444444 3346677889999999999999999998888 4445444443
No 114
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=7.7e-16 Score=155.49 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=129.7
Q ss_pred ccccccCCccc-c-ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCccc
Q 006700 351 VEAIKNNGDII-L-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vi-g-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~ 425 (635)
..+..+|++++ | +..+...+..+. .. ...++++||||||||||++++++++.+. ..+.+++......
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~---~~-----~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNAL---RQ-----EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW 86 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHH---hC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh
Confidence 34566788887 3 333333333332 11 1224799999999999999999998764 2233333322111
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC---C
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD---L 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~---l 501 (635)
...+++.... ...+|||||++.+..+ ......|..++...-+ .+++.+|+||+ .|.. +
T Consensus 87 -------~~~~~~~~~~---~~dlliiDdi~~~~~~-------~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 87 -------FVPEVLEGME---QLSLVCIDNIECIAGD-------ELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred -------hhHHHHHHhh---hCCEEEEeChhhhcCC-------HHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcc
Confidence 1112222221 2358999999987432 2222233333333222 23334555665 4444 5
Q ss_pred cHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
.+.+.|||. .++.+.+|+.+++..+++..+..... .++++++++|+.++.| +
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~-------------------------~l~~~v~~~L~~~~~~-d 202 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF-------------------------ELPEDVGRFLLKRLDR-E 202 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhhcC-C
Confidence 799999986 79999999999999999876654322 3899999999999988 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.|.+..+++.+..++.. ....||...+++++.
T Consensus 203 ~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 203 MRTLFMTLDQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 66666666655434333 335699999998864
No 115
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-16 Score=167.26 Aligned_cols=172 Identities=23% Similarity=0.276 Sum_probs=127.3
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcc-----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~-----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~ 428 (635)
+.+|+.|+..+.+++.|.+-+..+... +.+.+.-|++|||||||||||+++-++|++++.+++.+..+.+..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 389999999999999987655555443 233344589999999999999999999999999999886655432
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccC-----c-HHHHHHHHHHHHHhC---CCC-CCEEEEEEeCCC
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM-----S-EAQRSALNALLFRTG---DQS-RDIVLVLATNRP 498 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~-----~-~~~~~~L~~ll~~~~---~~~-~~viiI~ttN~~ 498 (635)
+. .++.++.... ..+||+|.+||+-+.-++.... . ....-.|..||.-++ ..+ ..-+||+|||..
T Consensus 274 n~--dLr~LL~~t~---~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 DS--DLRHLLLATP---NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred cH--HHHHHHHhCC---CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 2666665433 3589999999987653322110 0 011234555555554 222 346899999999
Q ss_pred CCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHh
Q 006700 499 GDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKK 533 (635)
Q Consensus 499 ~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~ 533 (635)
+.|||++++ |+|.+|++..-+......++..|+.-
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999 99999999999999999999998853
No 116
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.4e-17 Score=183.93 Aligned_cols=293 Identities=16% Similarity=0.166 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHhhhhhhHHHHHHHHhhhhccccccceee
Q 006700 194 TEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRM-LIERINGEREKWLAAINTTFSHIEEGVRSL 272 (635)
Q Consensus 194 ~~~el~~l~~~~~~ek~el~~~~~~~k~~~E~~~~~~~~~~~~d~~~~~-l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 272 (635)
.....+++...|+.++..+++..-.+...++... +...++..|+..+. +++...+ ... .+ ......+
T Consensus 458 ~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~-~~---~~~~~~~------ 525 (898)
T KOG1051|consen 458 SKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DEL-SE---KSNDNQG------ 525 (898)
T ss_pred cccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchhhhccccccc-hhh-hh---hcccccC------
Confidence 3345567778898888888888887888887777 88888889998887 8877776 111 11 1111111
Q ss_pred cccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhCCCCccccccCCCCCCcchhHHHHHHHhhhccCCCCCCccc
Q 006700 273 LTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVE 352 (635)
Q Consensus 273 ~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg~p~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (635)
.+..+..++..||++ +..++...+-++.+... +.+.
T Consensus 526 --~~~~i~~~~s~~tgi--------p~~~~~~~e~~~l~~L~------------------~~L~---------------- 561 (898)
T KOG1051|consen 526 --GESDISEVVSRWTGI--------PVDRLAEAEAERLKKLE------------------ERLH---------------- 561 (898)
T ss_pred --CccchhhhhhhhcCC--------chhhhhhhHHHHHHHHH------------------HHHH----------------
Confidence 345555656666655 44444444444443111 1111
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCC-------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGD------- 422 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~------- 422 (635)
+.|+||+++...|...+...+.+.....|...|||.||+|+|||-+|++||..+- ..++.++++.
T Consensus 562 -----~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 -----ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred -----hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 6799999999999999988876554446778999999999999999999999982 3466665553
Q ss_pred ----cccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCC
Q 006700 423 ----VAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSR 487 (635)
Q Consensus 423 ----~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~ 487 (635)
..+.|.+..+.+.+.+ +.+|++||||||||. ++..+++.|++.+++ +.+
T Consensus 637 igsp~gyvG~e~gg~Lteav----rrrP~sVVLfdeIEk------------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAV----KRRPYSVVLFEEIEK------------AHPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred cCCCcccccchhHHHHHHHH----hcCCceEEEEechhh------------cCHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2334555555554444 888999999999994 566778877777653 457
Q ss_pred CEEEEEEeCCC----------------------------------------CCCcHHHHccccceEecCCCCHHHHHHHH
Q 006700 488 DIVLVLATNRP----------------------------------------GDLDSAITDRIDEVIEFPLPREEERFKLL 527 (635)
Q Consensus 488 ~viiI~ttN~~----------------------------------------~~l~~~l~~R~d~~i~~~~p~~~er~~Il 527 (635)
|++||||+|.. ..+.++|++|+|..+.|.+.+.++..+|+
T Consensus 701 N~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~ 780 (898)
T KOG1051|consen 701 NAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIV 780 (898)
T ss_pred ceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhh
Confidence 89999998842 12346778899999999999999888888
Q ss_pred HHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 528 KLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
...+..... .+......+ .+++.+...++. .||+..
T Consensus 781 ~~~~~e~~~-------------r~~~~~~~~---~v~~~~~~~v~~--~~~d~~ 816 (898)
T KOG1051|consen 781 NKQLTEIEK-------------RLEERELLL---LVTDRVDDKVLF--KGYDFD 816 (898)
T ss_pred hhHHHHHHH-------------HhhhhHHHH---HHHHHHHhhhhh--cCcChH
Confidence 887765532 111111111 266677777774 477663
No 117
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.70 E-value=4.4e-16 Score=168.41 Aligned_cols=234 Identities=18% Similarity=0.291 Sum_probs=150.0
Q ss_pred ccccChHHHHHHHHHHHH----Hhcccc----cCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---ch
Q 006700 359 DIILHPSLQRRIQHLAKA----TANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LG 427 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~----~~~~~~----~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~ 427 (635)
.|||++.+++.|...+.. +..... ...+..++||+||||||||++|++||..++.+|+.++++.+.. +|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 489999999999665421 211111 1124468999999999999999999999999999999887643 23
Q ss_pred hhHHHHHHHHHHHH---hhcCCcEEEEecCchhhhhhcccccC-----cHHHHHHHHHHHHHhC----------CCCCCE
Q 006700 428 AQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCERNSIHM-----SEAQRSALNALLFRTG----------DQSRDI 489 (635)
Q Consensus 428 ~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~-----~~~~~~~L~~ll~~~~----------~~~~~v 489 (635)
.+....+..++..+ .....++||||||||.+..++.+.+. ....+..|..+|.... ....++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 33333344443321 11234789999999999866332111 1234555555554210 112356
Q ss_pred EEEEEeCCCC----------------------------------------------------CCcHHHHccccceEecCC
Q 006700 490 VLVLATNRPG----------------------------------------------------DLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 490 iiI~ttN~~~----------------------------------------------------~l~~~l~~R~d~~i~~~~ 517 (635)
++|.|+|... -|.|+|+.|+|.++.|.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 6777766500 146899999999999999
Q ss_pred CCHHHHHHHHHH----HHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCCHHHHHHHHHHH-
Q 006700 518 PREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMASV- 590 (635)
Q Consensus 518 p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~~~- 590 (635)
++.+++.+|+.. .++++.. ++......+. ++++++.+|+.. ..++..|.|+.++..+
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~-------------~l~~~~i~L~---~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l 375 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQK-------------LFEMDGVELE---FTDEALEAIAKKAIERKTGARGLRSILEEIL 375 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------HHHhCCcEEE---ECHHHHHHHHHhCCCCCCCCchHHHHHHHHh
Confidence 999999999985 3333321 3333333333 899999999986 4466778999888533
Q ss_pred HHHHHcCC------CCccCHHHHH
Q 006700 591 QAAVYARP------DCVLDSQLFR 608 (635)
Q Consensus 591 q~aa~~s~------~~~lt~~~i~ 608 (635)
...++.-. ...||.+.+.
T Consensus 376 ~~~~~~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 376 LDVMFELPSREDVEKVVITKEVVE 399 (412)
T ss_pred HHHHHhccccCCCceEEECHHHhc
Confidence 33333211 1346766654
No 118
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.70 E-value=8.7e-17 Score=172.89 Aligned_cols=221 Identities=25% Similarity=0.339 Sum_probs=171.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-- 425 (635)
.....+|+++||.+.....+...+.....+... |||+|.+||||.++|+++++.+ +.||+.+||+.+..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdst------VLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDST------VLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCc------EEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 456779999999999888888888877666554 9999999999999999999988 57999999999886
Q ss_pred chhhHHHHHHHHHHHHhhcC--------CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCE
Q 006700 426 LGAQAVTKIHEIFDWAKKSK--------KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDI 489 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~--------~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~v 489 (635)
+.++.++...+.|+.|.+.+ .++.||||||..| +...+..|..+|+.-. ..+.+|
T Consensus 312 lESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t~~~~vDV 382 (560)
T COG3829 312 LESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGTKPIPVDV 382 (560)
T ss_pred HHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCCCceeeEE
Confidence 56666777778888877642 3457999999876 6788888888888732 345689
Q ss_pred EEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhh
Q 006700 490 VLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 558 (635)
Q Consensus 490 iiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (635)
.||+|||.. ..|...+.-|+ .++.+..|...+|.+ |..+|+.++.. ..+.
T Consensus 383 RIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~------------------~~~~ 443 (560)
T COG3829 383 RIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSR------------------RYGR 443 (560)
T ss_pred EEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHH------------------HcCC
Confidence 999999963 45677777799 788888888766655 67777776654 2233
Q ss_pred hccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCCCccCHHHHH
Q 006700 559 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY-ARPDCVLDSQLFR 608 (635)
Q Consensus 559 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~-~s~~~~lt~~~i~ 608 (635)
.+..++++++..|.++ .|.| +++.|-|.++.++. ...+..|+.+++-
T Consensus 444 ~v~~ls~~a~~~L~~y--~WPG-NVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 444 NVKGLSPDALALLLRY--DWPG-NVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred CcccCCHHHHHHHHhC--CCCc-hHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 3456899999999866 6777 89999999988886 3445556766655
No 119
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.70 E-value=3.5e-16 Score=168.22 Aligned_cols=227 Identities=15% Similarity=0.265 Sum_probs=146.9
Q ss_pred CccccChHHHHHHHHHHHH-Hhcccc---cC------CCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc--
Q 006700 358 GDIILHPSLQRRIQHLAKA-TANTKI---HQ------APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~-~~~~~~---~~------~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-- 425 (635)
+.|||++.+++.+...+.. ...... .. ....+|||+||||||||++|++||..++.+|..+++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 4579999999999765521 111111 11 12368999999999999999999999999999988877643
Q ss_pred -chhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCc-----HHHHHHHHHHHHHhC----------CCC
Q 006700 426 -LGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMS-----EAQRSALNALLFRTG----------DQS 486 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~-----~~~~~~L~~ll~~~~----------~~~ 486 (635)
+|.+....+...+..+. ....++||||||+|.+.+++++...+ +..++.|..+|...- .++
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 23333344444443211 12246799999999998754432211 234455555553211 124
Q ss_pred CCEEEEEEeCCC---------------------------C-----------------------CCcHHHHccccceEecC
Q 006700 487 RDIVLVLATNRP---------------------------G-----------------------DLDSAITDRIDEVIEFP 516 (635)
Q Consensus 487 ~~viiI~ttN~~---------------------------~-----------------------~l~~~l~~R~d~~i~~~ 516 (635)
.++++|+|+|.. + -+.|+|+.|+|.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 578899999861 0 14589999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCCHHHHHHHHHHH-HHH
Q 006700 517 LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMASV-QAA 593 (635)
Q Consensus 517 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~~~-q~a 593 (635)
+++.+++.+|+...++.... .+..++......+. ++++++++|+.. ..++..|.|+.++... ...
T Consensus 317 pL~~~~L~~Il~~~~n~l~k---------q~~~~l~~~gi~L~---~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVK---------QYQALFKMDNVELD---FEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHH---------HHHHHhccCCeEEE---ECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 99999999999875433221 01112222233333 899999999987 3466789999988644 333
Q ss_pred HHc
Q 006700 594 VYA 596 (635)
Q Consensus 594 a~~ 596 (635)
.+.
T Consensus 385 m~e 387 (413)
T TIGR00382 385 MFD 387 (413)
T ss_pred Hhh
Confidence 433
No 120
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.1e-15 Score=173.39 Aligned_cols=204 Identities=17% Similarity=0.227 Sum_probs=149.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------------------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------ 414 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------ 414 (635)
.+..|++||||+.+.+.|...+.. +..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 346899999999999988776552 3344569999999999999999999988642
Q ss_pred -------eeeccCCCcccchhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 415 -------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 415 -------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
++.+++.+ ......+..+...+.. ...+.|+||||+|.|. ....+.|+..+++
T Consensus 85 ~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~LEe 147 (614)
T PRK14971 85 NEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKTLEE 147 (614)
T ss_pred hcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHHHhC
Confidence 11222111 1123445555544432 2346799999999873 2467788888888
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 485 ~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
.+.+++||++|+....+.+.|++|+ .++.|.+++.++....+..++..... .++
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi-------------------------~i~ 201 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGI-------------------------TAE 201 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCC
Confidence 8889999999988899999999999 88999999999999999888876543 278
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++++..|+..+.| |++.+++.++..+...++. ||.+++.+.+
T Consensus 202 ~~al~~La~~s~g----dlr~al~~Lekl~~y~~~~-It~~~V~~~l 243 (614)
T PRK14971 202 PEALNVIAQKADG----GMRDALSIFDQVVSFTGGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHhccCC-ccHHHHHHHh
Confidence 8899999999877 6666666554443222323 7776665554
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=6e-16 Score=171.02 Aligned_cols=225 Identities=16% Similarity=0.222 Sum_probs=147.2
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~ 424 (635)
...+..+|+++|..+....++..+.....+. +..+++++||||||||||+|++++++.+ +..++++++.++.
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc---CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 3567789999775454444444333333322 2345679999999999999999999987 4456677665543
Q ss_pred c-chhhHH-HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC-
Q 006700 425 P-LGAQAV-TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD- 500 (635)
Q Consensus 425 ~-~~~~~~-~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~- 500 (635)
. +..... .....+.. ......+|+|||++.+..+. ..+..+..++..+.+.. . .+|+||| .|..
T Consensus 191 ~~~~~~~~~~~~~~~~~---~~~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~~-~-~iiits~~~p~~l 258 (450)
T PRK00149 191 NDFVNALRNNTMEEFKE---KYRSVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEAG-K-QIVLTSDRPPKEL 258 (450)
T ss_pred HHHHHHHHcCcHHHHHH---HHhcCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCC-C-cEEEECCCCHHHH
Confidence 2 111100 01111221 12236799999999875321 12222333332322222 2 2555665 4443
Q ss_pred --CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 501 --LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 501 --l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
+++.+.+||. .++.|++|+.++|..|++..+..... .++++.++.|+..+.
T Consensus 259 ~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~-------------------------~l~~e~l~~ia~~~~ 313 (450)
T PRK00149 259 PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI-------------------------DLPDEVLEFIAKNIT 313 (450)
T ss_pred HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHcCcC
Confidence 7789999995 58999999999999999998876432 389999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 577 GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 577 G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
| +.|+|..+++.+.+.+... ...||.+.+++++.....
T Consensus 314 ~-~~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 314 S-NVRELEGALNRLIAYASLT-GKPITLELAKEALKDLLA 351 (450)
T ss_pred C-CHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 7 7788888888777665543 356899999999998753
No 122
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.69 E-value=2.8e-16 Score=151.37 Aligned_cols=190 Identities=21% Similarity=0.314 Sum_probs=142.4
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-CC----CeeeccCCCcccchhh
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-GL----DYAMMTGGDVAPLGAQ 429 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-~~----~~~~l~~~~~~~~~~~ 429 (635)
..+.++||+++...+|.-++. .+..+|++|.|||||||||.+.+||+.+ |. .+..++.++- -|.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--RGID 93 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--RGID 93 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc--cccH
Confidence 346899999999999987765 3334589999999999999999999987 43 2456666653 3445
Q ss_pred HHHHHHHHHHHHhhc---CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHH
Q 006700 430 AVTKIHEIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAIT 506 (635)
Q Consensus 430 ~~~~l~~~f~~a~~~---~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~ 506 (635)
.+.+-.+.|..-+-. .+..|++|||+|++ +...++.|...+.... ..+.|+++||..+.+-..+.
T Consensus 94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSM---------T~gAQQAlRRtMEiyS---~ttRFalaCN~s~KIiEPIQ 161 (333)
T KOG0991|consen 94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSM---------TAGAQQALRRTMEIYS---NTTRFALACNQSEKIIEPIQ 161 (333)
T ss_pred HHHHHHHHHHHhhccCCCCceeEEEeeccchh---------hhHHHHHHHHHHHHHc---ccchhhhhhcchhhhhhhHH
Confidence 555555566554322 23469999999988 3556677777665554 45569999999999999999
Q ss_pred ccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH
Q 006700 507 DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586 (635)
Q Consensus 507 ~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 586 (635)
||| -++.|...+..+...-+....+.... .++++.++.|.-..+| |+++.
T Consensus 162 SRC-AiLRysklsd~qiL~Rl~~v~k~Ekv-------------------------~yt~dgLeaiifta~G----DMRQa 211 (333)
T KOG0991|consen 162 SRC-AILRYSKLSDQQILKRLLEVAKAEKV-------------------------NYTDDGLEAIIFTAQG----DMRQA 211 (333)
T ss_pred hhh-HhhhhcccCHHHHHHHHHHHHHHhCC-------------------------CCCcchHHHhhhhccc----hHHHH
Confidence 999 78888888887665544444332221 3889999999988889 99999
Q ss_pred HHHHHHHHHc
Q 006700 587 MASVQAAVYA 596 (635)
Q Consensus 587 ~~~~q~aa~~ 596 (635)
++.+|+.+.+
T Consensus 212 lNnLQst~~g 221 (333)
T KOG0991|consen 212 LNNLQSTVNG 221 (333)
T ss_pred HHHHHHHhcc
Confidence 9999998765
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=1e-15 Score=167.17 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=146.4
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~ 424 (635)
...+..+|++++..+........+.....+ ++..+++++||||||||||+|++++++++ +..++++++.++.
T Consensus 102 ~l~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCCCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 356778999965434433333333333332 22345569999999999999999999987 4567777765543
Q ss_pred c-chhhH-HHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCC--
Q 006700 425 P-LGAQA-VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG-- 499 (635)
Q Consensus 425 ~-~~~~~-~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~-- 499 (635)
. +.... ...+..+.... ....+|+|||++.+.++ ...+..+..++..+.... ..+|+|+| .|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~---~~~dlLiiDDi~~l~~~-------~~~~~~l~~~~n~~~~~~--~~iiits~~~p~~l 246 (405)
T TIGR00362 179 NDFVNALRNNKMEEFKEKY---RSVDLLLIDDIQFLAGK-------ERTQEEFFHTFNALHENG--KQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHcCCHHHHHHHH---HhCCEEEEehhhhhcCC-------HHHHHHHHHHHHHHHHCC--CCEEEecCCCHHHH
Confidence 2 11000 01111222222 23579999999987532 122233333333322222 23556665 343
Q ss_pred -CCcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 500 -DLDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 500 -~l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
.+++.+.+||. .++.|++|+.++|..|++..+..... .++++.+..|+..+.
T Consensus 247 ~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~-------------------------~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 247 PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL-------------------------ELPDEVLEFIAKNIR 301 (405)
T ss_pred hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcC
Confidence 36788999996 47999999999999999998876433 389999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 577 GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 577 G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
| +.|+|..+++.+.+.+...+ ..||.+.+.+++...+.
T Consensus 302 ~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 302 S-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred C-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 7 88888888888877665433 55899999998887654
No 124
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.69 E-value=1.2e-15 Score=153.09 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=137.7
Q ss_pred ccccCCcccc--ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch
Q 006700 353 AIKNNGDIIL--HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig--~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~ 427 (635)
...+|++++. +..+...+..++. .....+++|+||||||||++|+++++.+ +.+++++++..+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA--------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD 81 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh--------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH
Confidence 3456788873 4445555555432 2234579999999999999999999887 4567777766543211
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCCC---cH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGDL---DS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-~~~l---~~ 503 (635)
..++... ....+|||||++.+... ...+..|..++....... ..+|+||+. +..+ .+
T Consensus 82 -------~~~~~~~---~~~~lLvIDdi~~l~~~-------~~~~~~L~~~l~~~~~~~--~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 -------PEVLEGL---EQADLVCLDDVEAIAGQ-------PEWQEALFHLYNRVREAG--GRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -------HHHHhhc---ccCCEEEEeChhhhcCC-------hHHHHHHHHHHHHHHHcC--CeEEEECCCChHHCCcccH
Confidence 2233222 22469999999987321 112344444544433222 256666663 3332 27
Q ss_pred HHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+|+. ..+.+++|+.+++..++..++..... .++++.+..|+..+.| +.+
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-------------------------~~~~~~l~~L~~~~~g-n~r 196 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-------------------------QLPDEVADYLLRHGSR-DMG 196 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHH
Confidence 8888874 68999999999999999887654332 2789999999998766 888
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++..++..+..++.. ....||.+.+.+++
T Consensus 197 ~L~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 197 SLMALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 888888888766555 34579999998876
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.69 E-value=1.7e-15 Score=152.20 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=136.8
Q ss_pred cccccCCccccC--hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc
Q 006700 352 EAIKNNGDIILH--PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL 426 (635)
Q Consensus 352 ~~~~~~~~vig~--~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~ 426 (635)
.+..+|+++++. ..+...+..+.. .....++++|+||||||||++|+++++.+ +.+++.+++..+..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~- 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL- 83 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-
Confidence 445678998843 344444443332 12234579999999999999999999876 55777777655321
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---CCcH
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---DLDS 503 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---~l~~ 503 (635)
.+. ....+.+|||||+|.+. ...+..|..++...... +..++|++++.+. .+.+
T Consensus 84 ----------~~~---~~~~~~~liiDdi~~l~---------~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 84 ----------AFD---FDPEAELYAVDDVERLD---------DAQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred ----------HHh---hcccCCEEEEeChhhcC---------chHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCCH
Confidence 111 12235799999999762 23344555555444332 3334555555322 4568
Q ss_pred HHHccc--cceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRI--DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+|| ...+.+++|+.+++..++..++..... .++++.+..|+..+.| +.+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-------------------------~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL-------------------------QLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhccC-CHH
Confidence 889898 478999999998888888876654432 3899999999998877 777
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
++..+++.+...+.. ....||..++.+++.
T Consensus 195 ~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 195 SLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 777777776654544 336899999999885
No 126
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=3.4e-15 Score=160.74 Aligned_cols=224 Identities=18% Similarity=0.199 Sum_probs=149.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---------CCeeeccCCC
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---------LDYAMMTGGD 422 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---------~~~~~l~~~~ 422 (635)
.+....+.++|.++-.+.|...+..... +..+++++|+||||||||++++.+++.+. ..+++++|..
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3444447899999888888777665433 22335799999999999999999998763 4577778765
Q ss_pred cccc---h------------------hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH
Q 006700 423 VAPL---G------------------AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 481 (635)
Q Consensus 423 ~~~~---~------------------~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~ 481 (635)
.... . ......+..++.......++.||+|||+|.+... ....|..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------DDDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------CcHHHHhHhcc
Confidence 4320 0 0111223344444444455789999999998621 12345555544
Q ss_pred --hCC-CCCCEEEEEEeCCCC---CCcHHHHcccc-ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhh
Q 006700 482 --TGD-QSRDIVLVLATNRPG---DLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 554 (635)
Q Consensus 482 --~~~-~~~~viiI~ttN~~~---~l~~~l~~R~d-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 554 (635)
... ...++.+|+++|.++ .+++.+.+||. ..+.|++|+.+++..|+...+..... +
T Consensus 156 ~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~--~--------------- 218 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFY--D--------------- 218 (365)
T ss_pred ccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhcc--C---------------
Confidence 222 336789999999775 58888999985 67999999999999999998763211 0
Q ss_pred hhhhhccCCCHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHH---HcCCCCccCHHHHHHHHHHHH
Q 006700 555 QQKITIKDLSDNVIQEAARK---TEGFSGREIAKLMASVQAAV---YARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 555 ~~~~~~~~~~~~~l~~la~~---t~G~sgrdI~~L~~~~q~aa---~~s~~~~lt~~~i~~~l~~~~ 615 (635)
..++++.+..++.. +.| |++.+++.+..++ ...+...||.+++..+++...
T Consensus 219 ------~~~~~~~l~~i~~~~~~~~G----d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 ------GVLDDGVIPLCAALAAQEHG----DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred ------CCCChhHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 02667766665544 345 6666655554443 334556899999999887764
No 127
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-15 Score=175.56 Aligned_cols=225 Identities=16% Similarity=0.190 Sum_probs=154.2
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc-
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA- 424 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~- 424 (635)
.++.+||.+.....+..++.. ....++||+||||||||++|+.++..+ ++.++.++.+.+.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla 255 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc
Confidence 457899988888777765543 112468999999999999999999875 3334444333221
Q ss_pred --cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---
Q 006700 425 --PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 499 (635)
Q Consensus 425 --~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--- 499 (635)
.+.++....+..+|..+.... ++||||||+|.+++.+...+......+.|..++ ..+.+.+|++||.++
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-----~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-----SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-----hCCCeEEEecCChHHHHH
Confidence 134456677788888776544 679999999999876543222223334444444 356799999999764
Q ss_pred --CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 500 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 500 --~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
..|++|.+|| ..|.++.|+.+++..||+.+...+.. ...+ .++++++..++..+..
T Consensus 330 ~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~------------------~h~v---~i~~~al~~a~~ls~r 387 (758)
T PRK11034 330 IFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA------------------HHDV---RYTAKAVRAAVELAVK 387 (758)
T ss_pred HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh------------------ccCC---CcCHHHHHHHHHHhhc
Confidence 5799999999 58999999999999999998877654 2222 2788888887766554
Q ss_pred C-----CHHHHHHHHHHHHHHHHcC----CCCccCHHHHHHHHHHHHh
Q 006700 578 F-----SGREIAKLMASVQAAVYAR----PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 578 ~-----sgrdI~~L~~~~q~aa~~s----~~~~lt~~~i~~~l~~~~~ 616 (635)
| -|.....|++.+.+.+... ....++.+++..++....-
T Consensus 388 yi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred cccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 3 3335556666444433221 2345888888888876553
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=3.1e-15 Score=175.67 Aligned_cols=190 Identities=18% Similarity=0.252 Sum_probs=136.6
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC----------CCeeeccCCCcc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----------LDYAMMTGGDVA 424 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~----------~~~~~l~~~~~~ 424 (635)
..++.+||+++...++..+.. . ....|++|+||||||||++++.||+.+. ..++.++.+.+.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~---r-----~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL---R-----RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh---c-----CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh
Confidence 467899999997655544332 1 1223799999999999999999999862 335555554432
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
.+.++....+..+|+.+.....++||||||++.+.+.++..+. ...-+.|...+ ..+.+.+|+||+..+
T Consensus 256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~n~Lkp~l-----~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDAANLLKPAL-----ARGELRTIAATTWAEYK 329 (852)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccHHHHhhHHh-----hCCCeEEEEecCHHHHh
Confidence 2556777889999998876666789999999999876543221 11112333332 356799999998643
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
.+|++|.+|| ..|.|+.|+.++...||+.+...+.. ...+ .++++++..++..+.
T Consensus 330 ~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~------------------~~~v---~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 330 KYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK------------------HHGV---LILDEAVVAAVELSH 387 (852)
T ss_pred hhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh------------------cCCC---eeCHHHHHHHHHHcc
Confidence 4899999999 68999999999999998777665543 1122 278999999999888
Q ss_pred CCCH
Q 006700 577 GFSG 580 (635)
Q Consensus 577 G~sg 580 (635)
+|-+
T Consensus 388 ryi~ 391 (852)
T TIGR03345 388 RYIP 391 (852)
T ss_pred cccc
Confidence 7744
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=5.8e-15 Score=160.60 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=151.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCccc---
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP--- 425 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~--- 425 (635)
....+.++|.+.-.+.|...+..... +..+.+++|+||||||||++++.+++.+ +..++.++|.....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~----~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR----GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 33447788888777777766644322 2233579999999999999999999887 46688888765322
Q ss_pred --------c--------hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC-CCC
Q 006700 426 --------L--------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-SRD 488 (635)
Q Consensus 426 --------~--------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~-~~~ 488 (635)
+ +......+..++........+.||+|||+|.+.... ....+..++...... ..+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhccCCCe
Confidence 0 001112233333334444557899999999986211 123455555544332 237
Q ss_pred EEEEEEeCCCC---CCcHHHHcccc-ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 489 IVLVLATNRPG---DLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 489 viiI~ttN~~~---~l~~~l~~R~d-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
+.+|+++|..+ .+++.+.+||. ..|.|++++.++...|+...+..... ...++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~-----------------------~~~~~ 230 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY-----------------------PGVVD 230 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc-----------------------cCCCC
Confidence 88999988653 57888888874 57899999999999999988753211 01278
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHcCCCCccCHHHHHHHHHHHHh
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAA---VYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~a---a~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+++++.++..+.+.+| |++.+++.+..+ +...+...||.+++..+++....
T Consensus 231 ~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 231 DEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 8899999988855444 777666555543 33345578999999999987643
No 130
>PRK06620 hypothetical protein; Validated
Probab=99.68 E-value=3.6e-15 Score=148.22 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=129.1
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCC-CceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhh
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQ 429 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p-~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~ 429 (635)
..+..+|+++|..+.-..++..+....... +..| .++++||||||||||++++++++..+..|+. ....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~--~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~------ 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF--GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF------ 78 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc--ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh------
Confidence 356668899887665555555444433211 1123 2679999999999999999999887653322 1110
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC--CcHHHHc
Q 006700 430 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD--LDSAITD 507 (635)
Q Consensus 430 ~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~--l~~~l~~ 507 (635)
....+ ....+|+|||||.+- ...|..++..+.+. +..+||.++..|.. + +.+++
T Consensus 79 ----~~~~~------~~~d~lliDdi~~~~------------~~~lf~l~N~~~e~-g~~ilits~~~p~~l~l-~~L~S 134 (214)
T PRK06620 79 ----NEEIL------EKYNAFIIEDIENWQ------------EPALLHIFNIINEK-QKYLLLTSSDKSRNFTL-PDLSS 134 (214)
T ss_pred ----chhHH------hcCCEEEEeccccch------------HHHHHHHHHHHHhc-CCEEEEEcCCCccccch-HHHHH
Confidence 00111 124689999999541 11233333333323 34455555544443 5 88999
Q ss_pred ccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHH
Q 006700 508 RID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 585 (635)
Q Consensus 508 R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 585 (635)
|+. .++.+.+|+.+++..+++..+..... .+++++++.|+.++.| +.|.+..
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l-------------------------~l~~ev~~~L~~~~~~-d~r~l~~ 188 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV-------------------------TISRQIIDFLLVNLPR-EYSKIIE 188 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHccC-CHHHHHH
Confidence 984 38999999999999999888765432 2899999999999877 6666666
Q ss_pred HHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 586 LMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 586 L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+++.+...+... ...||...+++++
T Consensus 189 ~l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 666655444433 3569999998876
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=2.4e-15 Score=164.68 Aligned_cols=227 Identities=13% Similarity=0.193 Sum_probs=141.3
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhccc-ccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP 425 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~ 425 (635)
...+..+|+++|..+....+...+.....+.. .++.++++++||||||+|||+|++++++.+ +..++++++..+..
T Consensus 103 ~l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~ 182 (445)
T PRK12422 103 ELDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE 182 (445)
T ss_pred CCCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence 35678899998854444433332222222211 222345679999999999999999999876 56666666544322
Q ss_pred chhhHHH-HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC---C
Q 006700 426 LGAQAVT-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PG---D 500 (635)
Q Consensus 426 ~~~~~~~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-~~---~ 500 (635)
....... .-...|.. ......||+|||++.+.++ ...+..+..++..+... + ..+|+|||. |. .
T Consensus 183 ~~~~~l~~~~~~~f~~--~~~~~dvLiIDDiq~l~~k-------~~~qeelf~l~N~l~~~-~-k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 183 HLVSAIRSGEMQRFRQ--FYRNVDALFIEDIEVFSGK-------GATQEEFFHTFNSLHTE-G-KLIVISSTCAPQDLKA 251 (445)
T ss_pred HHHHHHhcchHHHHHH--HcccCCEEEEcchhhhcCC-------hhhHHHHHHHHHHHHHC-C-CcEEEecCCCHHHHhh
Confidence 1111000 00112222 1234679999999987432 11222222332222111 2 256677764 33 5
Q ss_pred CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++.+.+||. .++.+++|+.+++..|++..+..... .++++++..|+....|
T Consensus 252 l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~-------------------------~l~~evl~~la~~~~~- 305 (445)
T PRK12422 252 MEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI-------------------------RIEETALDFLIEALSS- 305 (445)
T ss_pred hHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcCC-
Confidence 7799999995 78999999999999999998876433 3899999999998776
Q ss_pred CHHHHHHHHHHHHHH----HHcC-CCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAA----VYAR-PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~a----a~~s-~~~~lt~~~i~~~l~~~~~ 616 (635)
|++.|+.++... ++.+ .+..||.+++.+++.+.+.
T Consensus 306 ---dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 306 ---NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 555555544444 3332 2356899999999988653
No 132
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.8e-15 Score=165.80 Aligned_cols=225 Identities=14% Similarity=0.187 Sum_probs=147.1
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~ 425 (635)
..+..+|+++|..+.....+..+.....+. ...++.++|||++|||||+|++++++.+ +..++++++.++..
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~ 357 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 456788999986555443332222222221 2223459999999999999999999986 45667777765442
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC----CC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP----GD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~----~~ 500 (635)
+...........|.. ......||+||||+.+..+. ..+..|..++..+.+.. ..||+|||.+ ..
T Consensus 358 el~~al~~~~~~~f~~--~y~~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~g--k~IIITSd~~P~eL~~ 426 (617)
T PRK14086 358 EFINSIRDGKGDSFRR--RYREMDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNAN--KQIVLSSDRPPKQLVT 426 (617)
T ss_pred HHHHHHHhccHHHHHH--HhhcCCEEEEehhccccCCH-------HHHHHHHHHHHHHHhcC--CCEEEecCCChHhhhh
Confidence 211111111112221 23346899999999875322 22223333333332222 2366677754 35
Q ss_pred CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++.|.+||. .++.+..|+.+.|..||+..+..... .++++++.+|+.+..+
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-------------------------~l~~eVi~yLa~r~~r- 480 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL-------------------------NAPPEVLEFIASRISR- 480 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHhccC-
Confidence 7899999984 67899999999999999998766443 3899999999999877
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+.++|..+++.+.+.+...+ ..||.++++++++....
T Consensus 481 nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 481 NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 77788888887765554433 45888888888887755
No 133
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.66 E-value=1.7e-15 Score=160.08 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=141.9
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccc--hhhHHHHH
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GAQAVTKI 434 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~--~~~~~~~l 434 (635)
+||.+...+.+...+..+..... +|||+|++||||+++|++|+..+. .||+.++|+.+.+- ....++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~------pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDR------PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCC------CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc
Confidence 47777777777777776665443 399999999999999999998774 68999999876531 11111111
Q ss_pred HHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCC-
Q 006700 435 HEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRP- 498 (635)
Q Consensus 435 ~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~- 498 (635)
...|..+. ....+++||||||+.| +...+..|..+++.-. ....++.||++||..
T Consensus 75 ~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 75 AGAFTGAQKRHQGRFERADGGTLFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred cccccCcccccCCchhhCCCCEEEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH
Confidence 11111110 1223689999999987 5667777777765422 123578999999853
Q ss_pred ------CCCcHHHHccccceEecCCCCHHHHH----HHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhc-cCCCHHH
Q 006700 499 ------GDLDSAITDRIDEVIEFPLPREEERF----KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITI-KDLSDNV 567 (635)
Q Consensus 499 ------~~l~~~l~~R~d~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 567 (635)
..+.+.+..|| ..+.+..|...+|. .|+.+|+..+.. ..+..+ ..+++++
T Consensus 146 ~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~------------------~~~~~~~~~ls~~a 206 (329)
T TIGR02974 146 PALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHFAIRMAR------------------ELGLPLFPGFTPQA 206 (329)
T ss_pred HHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHHHHHHHH------------------HhCCCCCCCcCHHH
Confidence 46778899999 45556666655554 466777765432 112222 3589999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 606 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~ 606 (635)
+..|..+ .|.| +|+.|.+.++.++..+.+..++.++
T Consensus 207 ~~~L~~y--~WPG-NvrEL~n~i~~~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 207 REQLLEY--HWPG-NVRELKNVVERSVYRHGLEEAPIDE 242 (329)
T ss_pred HHHHHhC--CCCc-hHHHHHHHHHHHHHhCCCCccchhh
Confidence 9999966 6777 9999999999888876555566554
No 134
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.65 E-value=4.7e-15 Score=157.45 Aligned_cols=243 Identities=19% Similarity=0.328 Sum_probs=159.6
Q ss_pred CccccChHHHHHHHHHHHHH-hccc-----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chh
Q 006700 358 GDIILHPSLQRRIQHLAKAT-ANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~-~~~~-----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~ 428 (635)
..|||++++++.+.-.+..- +... ....+++++||+||||||||++|++||..++.+|+.+++..+.. .+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45899999999997655421 1111 12235689999999999999999999999999999998765531 222
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 006700 429 QAVTKIHEIFDWA------------------------------------------------------------------- 441 (635)
Q Consensus 429 ~~~~~l~~~f~~a------------------------------------------------------------------- 441 (635)
+....++.+|..+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3333333333222
Q ss_pred -----------------------------------------------------------------------hhcCCcEEE
Q 006700 442 -----------------------------------------------------------------------KKSKKGLLL 450 (635)
Q Consensus 442 -----------------------------------------------------------------------~~~~~~~vL 450 (635)
......+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 001234699
Q ss_pred EecCchhhhhhccccc---CcHHHHHHHHHHHHHhC-------CCCCCEEEEEEeC----CCCCCcHHHHccccceEecC
Q 006700 451 FIDEADAFLCERNSIH---MSEAQRSALNALLFRTG-------DQSRDIVLVLATN----RPGDLDSAITDRIDEVIEFP 516 (635)
Q Consensus 451 ~iDEid~l~~~r~~~~---~~~~~~~~L~~ll~~~~-------~~~~~viiI~ttN----~~~~l~~~l~~R~d~~i~~~ 516 (635)
||||||.+..+..+.+ .....++.|..++.... -+..++.||++.- .|.+|-|+|..||+.++.+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999999987653221 12334444444433211 1346788888653 56788999999999999999
Q ss_pred CCCHHHHHHHH----HHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCCHHHHHH
Q 006700 517 LPREEERFKLL----KLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-------EGFSGREIAK 585 (635)
Q Consensus 517 ~p~~~er~~Il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~G~sgrdI~~ 585 (635)
+++.++..+|| ...+++|.. +|......+. ++++++..||..+ .+.-.|-|+.
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~-------------Lf~~egv~L~---Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 395 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKA-------------LMKTEGVNIE---FSDEAIKRIAELAYNVNEKTENIGARRLHT 395 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHH-------------HHhhcCcEEE---EeHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 99999999988 334444432 4443333333 8999999999775 4666778888
Q ss_pred HHHHHH-HHHHcCCC-----CccCHHHHHHHHHHHHh
Q 006700 586 LMASVQ-AAVYARPD-----CVLDSQLFREVVEYKVE 616 (635)
Q Consensus 586 L~~~~q-~aa~~s~~-----~~lt~~~i~~~l~~~~~ 616 (635)
++..+- -..|...+ ..||.+.+...+...+.
T Consensus 396 ilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 396 VLERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 886443 33444332 36788888777776654
No 135
>PRK08727 hypothetical protein; Validated
Probab=99.65 E-value=1.2e-14 Score=146.50 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=131.6
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 428 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~ 428 (635)
.+..+|+++++.++. .+..+..... +.....++|+||+|||||+++++++..+ |....+++..+
T Consensus 13 ~~~~~f~~f~~~~~n--~~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~------ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDG--LLAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA------ 79 (233)
T ss_pred CCcCChhhccCCcHH--HHHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH------
Confidence 455688988876653 2222211111 1122459999999999999999998775 34444444322
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC---CcHH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD---LDSA 504 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~---l~~~ 504 (635)
....+...+... ....+|+|||++.+.... .....+..++...... +..+|+|+| .|.. +++.
T Consensus 80 -~~~~~~~~~~~l---~~~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~~--~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 80 -AAGRLRDALEAL---EGRSLVALDGLESIAGQR-------EDEVALFDFHNRARAA--GITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -hhhhHHHHHHHH---hcCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHc--CCeEEEECCCChhhhhhhhHH
Confidence 112233344333 235699999999875321 1223333444443222 344777776 4554 4799
Q ss_pred HHccc--cceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 505 ITDRI--DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 505 l~~R~--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+.||| ..++.|++|+.+++..|++.++..... .++++.+..|+..+.| |
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-------------------------~l~~e~~~~La~~~~r----d 197 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-------------------------ALDEAAIDWLLTHGER----E 197 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhCCC----C
Confidence 99996 478899999999999999987654322 2899999999999876 6
Q ss_pred HHHHHHHHHHH---HHcCCCCccCHHHHHHHHHH
Q 006700 583 IAKLMASVQAA---VYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 583 I~~L~~~~q~a---a~~s~~~~lt~~~i~~~l~~ 613 (635)
++.+++.++.. +.. ....||.+++++++..
T Consensus 198 ~r~~l~~L~~l~~~~~~-~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 198 LAGLVALLDRLDRESLA-AKRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHhh
Confidence 66665555433 333 2457999999998854
No 136
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.64 E-value=4.4e-15 Score=157.73 Aligned_cols=243 Identities=20% Similarity=0.331 Sum_probs=159.9
Q ss_pred CccccChHHHHHHHHHHHH-Hhcc-----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc--c-hh
Q 006700 358 GDIILHPSLQRRIQHLAKA-TANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--L-GA 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~-~~~~-----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~--~-~~ 428 (635)
..|+|++.+++.+...+.. .+.. ......+.++||+||||||||++|+.||..++.+|+.+++..+.. + +.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4599999999999776643 1111 111123579999999999999999999999999999998765542 2 22
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 006700 429 QAVTKIHEIFDWA------------------------------------------------------------------- 441 (635)
Q Consensus 429 ~~~~~l~~~f~~a------------------------------------------------------------------- 441 (635)
+....++.+|..|
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 3333333333333
Q ss_pred ---------------------------------------------------------------------hh-cCCcEEEE
Q 006700 442 ---------------------------------------------------------------------KK-SKKGLLLF 451 (635)
Q Consensus 442 ---------------------------------------------------------------------~~-~~~~~vL~ 451 (635)
.. ....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 00 11346999
Q ss_pred ecCchhhhhhccccc--C-cHHHHHHHHHHHHHhC-------CCCCCEEEEEEeC----CCCCCcHHHHccccceEecCC
Q 006700 452 IDEADAFLCERNSIH--M-SEAQRSALNALLFRTG-------DQSRDIVLVLATN----RPGDLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 452 iDEid~l~~~r~~~~--~-~~~~~~~L~~ll~~~~-------~~~~~viiI~ttN----~~~~l~~~l~~R~d~~i~~~~ 517 (635)
|||||.+....++.+ . .+..++.|..++.... -+..++.||++.- .|.+|-|+|..||+.++.+.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999987653221 1 2334444444433211 1346788888653 467788999999999999999
Q ss_pred CCHHHHHHHH----HHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCCHHHHHHH
Q 006700 518 PREEERFKLL----KLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-------EGFSGREIAKL 586 (635)
Q Consensus 518 p~~~er~~Il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~G~sgrdI~~L 586 (635)
++.++..+|| ...+++|.. +|......+. ++++++..||..+ ++.-.|-|+.+
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~-------------Lf~~egv~L~---Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI 398 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQA-------------LLATEGVTLE---FTDDAIRRIAEIAYQVNEKTENIGARRLHTV 398 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHH-------------HHhhcCcEEE---EcHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 9999999988 335555443 4443333333 8999999999764 46666788888
Q ss_pred HHHHH-HHHHcCCC-----CccCHHHHHHHHHHHHh
Q 006700 587 MASVQ-AAVYARPD-----CVLDSQLFREVVEYKVE 616 (635)
Q Consensus 587 ~~~~q-~aa~~s~~-----~~lt~~~i~~~l~~~~~ 616 (635)
+..+- ...|..++ ..||.+.+...+...+.
T Consensus 399 ~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 399 MEKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred HHHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHh
Confidence 86443 33333322 36788888777766553
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=6.4e-15 Score=161.66 Aligned_cols=225 Identities=16% Similarity=0.212 Sum_probs=144.7
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~ 424 (635)
...+..+|+++|..+....++..+.....+ ++ .+++++||||||||||+|++++++.+ +..++++++.++.
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~---~~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~ 172 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKN---PG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhC---cC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 356788999988555555444443333322 11 24569999999999999999999986 3456666665543
Q ss_pred cchhhHH--HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC-
Q 006700 425 PLGAQAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD- 500 (635)
Q Consensus 425 ~~~~~~~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~- 500 (635)
.-..... +.+..+.... + ..+.||+|||++.+.++ ...+..+..++..+.+. +. .+|+||+ .|..
T Consensus 173 ~~~~~~~~~~~~~~f~~~~-~-~~~dvLlIDDi~~l~~~-------~~~q~elf~~~n~l~~~-~k-~iIitsd~~p~~l 241 (440)
T PRK14088 173 NDLVDSMKEGKLNEFREKY-R-KKVDVLLIDDVQFLIGK-------TGVQTELFHTFNELHDS-GK-QIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHhcccHHHHHHHH-H-hcCCEEEEechhhhcCc-------HHHHHHHHHHHHHHHHc-CC-eEEEECCCCHHHH
Confidence 2111110 1111111111 1 13679999999987532 11222222233222222 22 4555654 5543
Q ss_pred --CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 501 --LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 501 --l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
+.+.+.+||. .++.|++|+.+.|..|++..+..... .++++++..|+..+.
T Consensus 242 ~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~-------------------------~l~~ev~~~Ia~~~~ 296 (440)
T PRK14088 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG-------------------------ELPEEVLNFVAENVD 296 (440)
T ss_pred HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHhccc
Confidence 5678889983 58899999999999999988765332 289999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 577 GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 577 G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
| +.|+|..+++.+.+.+... ...||.+.+.+++.+.+.
T Consensus 297 ~-~~R~L~g~l~~l~~~~~~~-~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 297 D-NLRRLRGAIIKLLVYKETT-GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred c-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhc
Confidence 7 7788888888776555443 356999999999988753
No 138
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-15 Score=162.19 Aligned_cols=222 Identities=23% Similarity=0.307 Sum_probs=170.5
Q ss_pred CCcccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcc
Q 006700 348 AGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA 424 (635)
Q Consensus 348 ~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~ 424 (635)
.....+...+.++||.+..+..+.+.+..+..+..+ |||+|.+||||..+|++|++.+ ..||+.+||+.+.
T Consensus 213 ~~~~~~~~~~~~iIG~S~am~~ll~~i~~VA~Sd~t------VLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 213 EQLSEVVLEVGGIIGRSPAMRQLLKEIEVVAKSDST------VLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred ccccchhcccccceecCHHHHHHHHHHHHHhcCCCe------EEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 334455678899999999999999999988877765 9999999999999999999998 4689999999987
Q ss_pred c--chhhHHHHHHHHHHHHhhcCC-------cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCC
Q 006700 425 P--LGAQAVTKIHEIFDWAKKSKK-------GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSR 487 (635)
Q Consensus 425 ~--~~~~~~~~l~~~f~~a~~~~~-------~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~ 487 (635)
. +.++.+++..+.|+.|...++ |+.||||||..| +-..+..|...|+.-+ ....
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 6 566777888888888776543 467999999876 5677888888887743 1235
Q ss_pred CEEEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhh
Q 006700 488 DIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556 (635)
Q Consensus 488 ~viiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (635)
+|.||++||.. ..|...+.-|+ .++.+..|...||.. +..+|+.+... ..
T Consensus 358 DVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~------------------~~ 418 (550)
T COG3604 358 DVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRR------------------RL 418 (550)
T ss_pred EEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHH------------------hc
Confidence 78999999962 35666677788 788888888877755 66667766543 12
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 557 KITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 557 ~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
+...-.++.++++.|..+ +|.| +++.|-+.++.++... +..++.+++
T Consensus 419 gr~~l~ls~~Al~~L~~y--~wPG-NVRELen~veRavlla-~~~~~~~d~ 465 (550)
T COG3604 419 GRAILSLSAEALELLSSY--EWPG-NVRELENVVERAVLLA-GRLTRRGDL 465 (550)
T ss_pred CCcccccCHHHHHHHHcC--CCCC-cHHHHHHHHHHHHHHh-cccCCCcce
Confidence 221123899999999976 7877 8888888888888865 455565554
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=3.7e-15 Score=175.43 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=124.3
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~ 424 (635)
..++.+||.+...+++..++.. ....+++|+||||||||++++.||..+ +.+++.++.+.+.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ 246 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 246 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh
Confidence 3568899999876665554331 122369999999999999999999987 5667777665542
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
.+.++....+..+|........++||||||+|.+.+...+.+ +....+.|...+ ..+.+.+|++|+..+
T Consensus 247 ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l-----~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 247 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLDEYR 320 (857)
T ss_pred hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchh-----hcCCCeEEEcCCCHHHH
Confidence 244566778888998876555678999999999987654333 223344454444 456889999999776
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
.+|+++.+||+ .|.++.|+.+++..|++.+..++..
T Consensus 321 ~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 321 QYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred HHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 48999999995 7889999999999999888766543
No 140
>PRK05642 DNA replication initiation factor; Validated
Probab=99.63 E-value=2.8e-14 Score=144.02 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=134.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~ 427 (635)
..+..+|++++.... ......+...... ....+.++++||||+|||||+|++++++++ +..+++++..++...
T Consensus 12 ~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~- 87 (234)
T PRK05642 12 LRDDATFANYYPGAN--AAALGYVERLCEA-DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR- 87 (234)
T ss_pred CCCcccccccCcCCh--HHHHHHHHHHhhc-cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-
Confidence 356678999884332 2222222222111 112334679999999999999999998765 455666655443321
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCC---CCcH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG---DLDS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~---~l~~ 503 (635)
...++.... ...+|+|||++.+.++ ......|..++....+. +. .+|+|++ .|. .+.+
T Consensus 88 ------~~~~~~~~~---~~d~LiiDDi~~~~~~-------~~~~~~Lf~l~n~~~~~-g~-~ilits~~~p~~l~~~~~ 149 (234)
T PRK05642 88 ------GPELLDNLE---QYELVCLDDLDVIAGK-------ADWEEALFHLFNRLRDS-GR-RLLLAASKSPRELPIKLP 149 (234)
T ss_pred ------hHHHHHhhh---hCCEEEEechhhhcCC-------hHHHHHHHHHHHHHHhc-CC-EEEEeCCCCHHHcCccCc
Confidence 112222222 2468999999977432 12233344444433222 23 3555555 343 3468
Q ss_pred HHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.|||. .++.+.+|+.+++..+++..+..... .++++++++|+.++.| ++|
T Consensus 150 ~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~-------------------------~l~~ev~~~L~~~~~~-d~r 203 (234)
T PRK05642 150 DLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL-------------------------HLTDEVGHFILTRGTR-SMS 203 (234)
T ss_pred cHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhcCC-CHH
Confidence 9999984 77888999999999999976544321 2899999999999877 777
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.+..+++.+..++.. ....||...+++++.
T Consensus 204 ~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 204 ALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 777777777655544 335699999998874
No 141
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2.2e-14 Score=157.67 Aligned_cols=226 Identities=12% Similarity=0.207 Sum_probs=145.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcccchh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~~~ 428 (635)
..+|+++|..+.-..++..+..... .++.++++++||||+|||||+|++++++.+ +..++++++.++.....
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~---~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSK---NPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHh---CcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 4689998755544434432222222 123345679999999999999999999965 35566776655443111
Q ss_pred hHHHHH-HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-C---CCcH
Q 006700 429 QAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-G---DLDS 503 (635)
Q Consensus 429 ~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-~---~l~~ 503 (635)
...... ..+...........+|+|||++.+..+ ...+..|..++....+... .+|+|+|.+ . .+++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k-------~~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 188 DILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK-------EKTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHHhhhHHHHHHHHhccCCEEEEeccccccCC-------HHHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccH
Confidence 111110 111111122334679999999977432 2233444444444332222 477787743 2 4678
Q ss_pred HHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+||. .++.+.+|+.+++..|++..+..... .. .++++++..|+..+.| ++|
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl----------------------~~-~l~~evl~~Ia~~~~g-d~R 314 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI----------------------KQ-EVTEEAINFISNYYSD-DVR 314 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC----------------------CC-CCCHHHHHHHHHccCC-CHH
Confidence 9999984 68899999999999999998875321 00 2899999999999988 777
Q ss_pred HHHHHHHHHHHHHHcCC-CCccCHHHHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARP-DCVLDSQLFREVVEYKV 615 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~-~~~lt~~~i~~~l~~~~ 615 (635)
.+..+++.+...++... ...||.+++.+++.+..
T Consensus 315 ~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 315 KIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 77777776665555432 35799999999998763
No 142
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.61 E-value=1.1e-14 Score=153.97 Aligned_cols=210 Identities=16% Similarity=0.199 Sum_probs=143.2
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccc--hhhH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GAQA 430 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~--~~~~ 430 (635)
.|+++||.+...+.+.+.+..+..... +|||+|++||||+++|++|+..+. .+|+.++|..+..- ....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~------pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDK------PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 457899999988888887777765433 399999999999999999998764 68999999986431 1111
Q ss_pred HHHH-----------HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEE
Q 006700 431 VTKI-----------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVL 491 (635)
Q Consensus 431 ~~~l-----------~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~vii 491 (635)
.+.. .+.|. ...+++|||||++.| +...+..|..+++.-. ....++.|
T Consensus 78 fg~~~~~~~g~~~~~~g~l~----~a~gGtL~l~~i~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 78 FGHEAGAFTGAQKRHPGRFE----RADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred ccccccccCCcccccCCchh----ccCCCeEEeCChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 1110 11222 223679999999988 4666777766665421 11236889
Q ss_pred EEEeCCC-------CCCcHHHHccccceEecCCCCHHHH----HHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh-
Q 006700 492 VLATNRP-------GDLDSAITDRIDEVIEFPLPREEER----FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT- 559 (635)
Q Consensus 492 I~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 559 (635)
|+||+.. ..+.+.+..|| ..+.+..|+..+| ..|+.+|+..+.. ..+..
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~------------------~~~~~~ 205 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCR------------------ELGLPL 205 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHH------------------HhCCCC
Confidence 9998753 46788899999 3445555555555 4477777765432 11112
Q ss_pred ccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHH
Q 006700 560 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQL 606 (635)
Q Consensus 560 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~ 606 (635)
+..++++++..|..+ .|+| +|+.|.+.++.++..+.+..++.++
T Consensus 206 ~~~~s~~al~~L~~y--~WPG-NvrEL~~vl~~a~~~~~~~~~~~~~ 249 (326)
T PRK11608 206 FPGFTERARETLLNY--RWPG-NIRELKNVVERSVYRHGTSEYPLDN 249 (326)
T ss_pred CCCCCHHHHHHHHhC--CCCc-HHHHHHHHHHHHHHhcCCCCCchhh
Confidence 124899999999966 7887 9999999999888765554554444
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.61 E-value=5.8e-14 Score=144.18 Aligned_cols=203 Identities=15% Similarity=0.173 Sum_probs=129.9
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chhhH-----HHH
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQA-----VTK 433 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~~~-----~~~ 433 (635)
-.+.+++.+..+....... .++||+||||||||++|++||..+|.+++.++|..-.. +.+.. ...
T Consensus 3 ~t~~~~~l~~~~l~~l~~g-------~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSG-------YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC-------CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 3455555555555544421 24999999999999999999999999999998865221 11110 000
Q ss_pred HHH-------------------HHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----C------
Q 006700 434 IHE-------------------IFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D------ 484 (635)
Q Consensus 434 l~~-------------------~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~------ 484 (635)
+.. .+..+. ..+.+|+|||++.+ +...+..|..++..-. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~g~l~~A~--~~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~ 144 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWVDNRLTLAV--REGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSR 144 (262)
T ss_pred HHHHHHHhhhhhcccceeecCchHHHHH--HcCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCc
Confidence 010 111122 23579999999986 4556666666664311 0
Q ss_pred ---CCCCEEEEEEeCCCC-----CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhh
Q 006700 485 ---QSRDIVLVLATNRPG-----DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556 (635)
Q Consensus 485 ---~~~~viiI~ttN~~~-----~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (635)
.+.++.||+|+|... .+++++.+|| ..+.+++|+.++...|+...+. .
T Consensus 145 ~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~---~-------------------- 200 (262)
T TIGR02640 145 YVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD---V-------------------- 200 (262)
T ss_pred eEecCCCCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC---C--------------------
Confidence 224788999999753 5689999999 8999999999999999987641 1
Q ss_pred hhhccCCCHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 557 KITIKDLSDNVIQEAARK---------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 557 ~~~~~~~~~~~l~~la~~---------t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
++...+.++.. ...++ ++.++..++.+........++.++|.+++.+.+.
T Consensus 201 -------~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 201 -------AEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred -------CHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 11111111110 11223 6666666666655555677899999999887664
No 144
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.61 E-value=4.7e-15 Score=167.42 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=151.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--h
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--G 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~ 427 (635)
+...|+++||.+...+.+.+.+..+..... +|||+|++|||||++|++|+..+ +.+|+.++|..+... .
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~ 264 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE 264 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHH
Confidence 346789999999999988887777664433 39999999999999999999986 469999999887531 1
Q ss_pred hhHHHHHHHHHHHH-------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEE
Q 006700 428 AQAVTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLV 492 (635)
Q Consensus 428 ~~~~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI 492 (635)
....+...+.|..+ .....+++||||||+.| +...+..|..+++.-. ....++.||
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI---------SPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC---------CHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 11111111111111 01223679999999988 4566666666665421 012368899
Q ss_pred EEeCCC-------CCCcHHHHcccc-ceEecCCCC--HHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 493 LATNRP-------GDLDSAITDRID-EVIEFPLPR--EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 493 ~ttN~~-------~~l~~~l~~R~d-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
+||+.. ..+.+.+..|+. ..|.+|+.. .+++..|+.+|+..+.. ..+.+ ..
T Consensus 336 ~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~------------------~~~~~-~~ 396 (534)
T TIGR01817 336 AATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR------------------ENGRP-LT 396 (534)
T ss_pred EeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHH------------------HcCCC-CC
Confidence 998753 467788888984 234555444 24555688888876542 11112 24
Q ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 006700 563 LSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 609 (635)
Q Consensus 563 ~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~ 609 (635)
++++++..|..+ .|+| +|+.|-+.++.++..+.+..|+.+++..
T Consensus 397 ~s~~a~~~L~~~--~WPG-NvrEL~~v~~~a~~~~~~~~I~~~~l~~ 440 (534)
T TIGR01817 397 ITPSAIRVLMSC--KWPG-NVRELENCLERTATLSRSGTITRSDFSC 440 (534)
T ss_pred CCHHHHHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCcccHHHCch
Confidence 899999999976 6776 9999999999999888888999988753
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.4e-14 Score=171.34 Aligned_cols=167 Identities=19% Similarity=0.245 Sum_probs=121.0
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~ 424 (635)
..++.+||.+...+++..++. . ...++++|+||||||||++++.|+..+ +.+++.++.+.+.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~---r-----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS---R-----RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh---c-----CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 356889999987666555432 1 223468999999999999999999986 4556666554432
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
.+.++....+..+|..+.....++||||||+|.+++.+...+ +. +..+.|...+ ..+.+.+|++|+..+
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~---d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM---DAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh---HHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 244566678888888876655679999999999986443322 11 2233332222 456799999998663
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
.+|+++.+|| ..|.++.|+.+++..|++.+..++..
T Consensus 316 ~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 316 KYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred HHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 5799999999 67899999999999999988777654
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.60 E-value=3.4e-14 Score=141.86 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=119.6
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcccc
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPL 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~ 426 (635)
.|..+|+++|-.+.-+.++..+..-..+ ++..+..++||||+|+|||+|.+++++.+ +..++++++.++...
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 3567899987544444433322222222 12234469999999999999999999875 445666655443321
Q ss_pred hhhHH--HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCC---C
Q 006700 427 GAQAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG---D 500 (635)
Q Consensus 427 ~~~~~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~---~ 500 (635)
..... +.+..+.+ ......+|+||+++.+..+ ...+..|..++..+.... + .+|+|++ .|. .
T Consensus 79 ~~~~~~~~~~~~~~~---~~~~~DlL~iDDi~~l~~~-------~~~q~~lf~l~n~~~~~~-k-~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 79 FADALRDGEIEEFKD---RLRSADLLIIDDIQFLAGK-------QRTQEELFHLFNRLIESG-K-QLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHTTSHHHHHH---HHCTSSEEEEETGGGGTTH-------HHHHHHHHHHHHHHHHTT-S-EEEEEESS-TTTTTT
T ss_pred HHHHHHcccchhhhh---hhhcCCEEEEecchhhcCc-------hHHHHHHHHHHHHHHhhC-C-eEEEEeCCCCccccc
Confidence 11111 11222222 2234679999999988532 223445555555543332 2 4566664 444 3
Q ss_pred CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++.+.+||. .++.+.+|+.+.|..|+..++..... .++++++..|+..+.+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-------------------------~l~~~v~~~l~~~~~~- 200 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-------------------------ELPEEVIEYLARRFRR- 200 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---------------------------S-HHHHHHHHHHTTS-
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-------------------------CCcHHHHHHHHHhhcC-
Confidence 6789999986 58899999999999999999887654 3899999999999866
Q ss_pred CHHHHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAA 593 (635)
Q Consensus 579 sgrdI~~L~~~~q~a 593 (635)
+.++|..+++.+.+.
T Consensus 201 ~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 201 DVRELEGALNRLDAY 215 (219)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777655543
No 147
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.60 E-value=1.6e-14 Score=161.89 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=149.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG- 427 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~- 427 (635)
.....|+++||.+...+.+...+..+..... +|||+|++||||+++|++++..+ +.+|+.++|..+.+..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~------pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDA------PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVV 271 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCCC------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHH
Confidence 3456899999999888877776666554433 39999999999999999998876 3689999998875411
Q ss_pred -hhHHHH-----------HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCC
Q 006700 428 -AQAVTK-----------IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSR 487 (635)
Q Consensus 428 -~~~~~~-----------l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~ 487 (635)
....+. ..++|..+ .+++||||||+.| +...+..|..+++.-. ....
T Consensus 272 e~elFG~~~~~~~~~~~~~~g~~e~a----~~GtL~LdeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 272 ESELFGHAPGAYPNALEGKKGFFEQA----NGGSVLLDEIGEM---------SPRMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred HHHhcCCCCCCcCCcccCCCChhhhc----CCCEEEEeChhhC---------CHHHHHHHHHHHhcCCcccCCCCcceee
Confidence 000000 01223322 3678999999987 5667777777775421 1234
Q ss_pred CEEEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHH----HHHHHHHHhhcCCCCCCCCccchhhhhhhhhh
Q 006700 488 DIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERF----KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556 (635)
Q Consensus 488 ~viiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (635)
++.||+||+.+ ..+.+.+..|+ .++.+..|+..+|. .|+.+|+..+.. ..
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~------------------~~ 399 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFAD------------------EQ 399 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHH------------------Hc
Confidence 67899988753 35778888898 45667677666655 366677666532 12
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 557 KITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 557 ~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
+.....++++++..|..+ .|+| +|+.|-+.+..++..+.+..|+.+++
T Consensus 400 g~~~~~ls~~a~~~L~~y--~WPG-NvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRY--GWPG-NVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CCCCCCcCHHHHHHHhcC--CCCC-HHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 222234899999999965 6776 99999999999988777777887775
No 148
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=5.3e-14 Score=149.58 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=114.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-------eeec-cC----
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-------YAMM-TG---- 420 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-------~~~l-~~---- 420 (635)
.+..|..++||+.+...|...+.. +..++.+||+||+|+|||++|+.+|+.+.+. .... .|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 455789999999999999876653 3334569999999999999999999998551 1000 00
Q ss_pred ----------CCcc---------------cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHH
Q 006700 421 ----------GDVA---------------PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSAL 475 (635)
Q Consensus 421 ----------~~~~---------------~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L 475 (635)
+++. .+..+....+...|......+.+.|+||||+|.|. ....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------~~aa 158 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------RNAA 158 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------HHHH
Confidence 1110 01112223333334333334557899999999873 3456
Q ss_pred HHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHH
Q 006700 476 NALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKL 529 (635)
Q Consensus 476 ~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~ 529 (635)
|.||..+++.+.++++|+.|+.++.+.+.++||| ..+.|++|+.++...++..
T Consensus 159 naLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 159 NAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred HHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 7788888888888999999999999999999999 8999999999999988886
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.60 E-value=1.7e-13 Score=139.88 Aligned_cols=132 Identities=22% Similarity=0.210 Sum_probs=99.9
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCcHHHHccccceEe
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAITDRIDEVIE 514 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~------------~~~l~~~l~~R~d~~i~ 514 (635)
|+||||||++.| +-....+|| ..+++... -+||++||+ |.-++..+++|+ .+|.
T Consensus 292 pGVLFIDEvHmL---------DIE~FsFln---rAlEse~a-PIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~ 357 (450)
T COG1224 292 PGVLFIDEVHML---------DIECFSFLN---RALESELA-PIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIIS 357 (450)
T ss_pred cceEEEechhhh---------hHHHHHHHH---HHhhcccC-cEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEe
Confidence 568999999876 222333333 33443333 367888885 456899999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 006700 515 FPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 594 (635)
Q Consensus 515 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa 594 (635)
..+++.++.+.|++........ .+++++++.|+....--|-|---+|+.-+.-.+
T Consensus 358 t~py~~~EireIi~iRa~ee~i-------------------------~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEEDI-------------------------ELSDDALEYLTDIGEETSLRYAVQLLTPASIIA 412 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhhcc-------------------------ccCHHHHHHHHhhchhhhHHHHHHhccHHHHHH
Confidence 9999999999999998876543 389999999998866666666667776666666
Q ss_pred HcCCCCccCHHHHHHHHHHHHhh
Q 006700 595 YARPDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 595 ~~s~~~~lt~~~i~~~l~~~~~~ 617 (635)
..++...+..+|++++.+-|...
T Consensus 413 ~~rg~~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 413 KRRGSKRVEVEDVERAKELFLDV 435 (450)
T ss_pred HHhCCCeeehhHHHHHHHHHhhH
Confidence 66677899999999999988763
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.59 E-value=6.5e-14 Score=147.38 Aligned_cols=244 Identities=16% Similarity=0.161 Sum_probs=146.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-------CCCe--eeccCC-Cc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDY--AMMTGG-DV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-------~~~~--~~l~~~-~~ 423 (635)
...|..|+|++.++..+.-.+.. ...+|+||+||||||||++|++++..+ ++++ ..+.+. +.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 45689999999999887642210 112479999999999999999999998 3321 111110 00
Q ss_pred ---------------ccch-hhHHHHHHHHHHHHh--------------hcCCcEEEEecCchhhhhhcccccCcHHHHH
Q 006700 424 ---------------APLG-AQAVTKIHEIFDWAK--------------KSKKGLLLFIDEADAFLCERNSIHMSEAQRS 473 (635)
Q Consensus 424 ---------------~~~~-~~~~~~l~~~f~~a~--------------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~ 473 (635)
..+. ..+...+.+..+... ....+++|||||++.+ +...+.
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~~~~q~ 146 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------EDHIVD 146 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------CHHHHH
Confidence 0000 000000111000000 1122468999999987 355555
Q ss_pred HHHHHHHHhC----------CCCCCEEEEEEeCCCC-CCcHHHHccccceEecCCCCH-HHHHHHHHHHHHhhcC-CCC-
Q 006700 474 ALNALLFRTG----------DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLC-SDE- 539 (635)
Q Consensus 474 ~L~~ll~~~~----------~~~~~viiI~ttN~~~-~l~~~l~~R~d~~i~~~~p~~-~er~~Il~~~l~~~~~-~~~- 539 (635)
.|...+..-. ..+.++++|+|+|..+ .+++++++||...+.+++|.. +++.+|+......... ...
T Consensus 147 ~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 147 LLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 5555554311 1345789999999754 699999999999999998877 8899999886432100 000
Q ss_pred --CCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc---CCCCH-HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 540 --GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT---EGFSG-REIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 540 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t---~G~sg-rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
...........+...+..+.-..+++..+.+|+..+ .--|. ++|. |+.++++.|..++...++.+|+..+...
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 000000011122222233333347888877776542 21133 3665 9999999999999999999999988855
Q ss_pred HH
Q 006700 614 KV 615 (635)
Q Consensus 614 ~~ 615 (635)
.+
T Consensus 306 vl 307 (334)
T PRK13407 306 AL 307 (334)
T ss_pred hh
Confidence 44
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.58 E-value=9.4e-14 Score=137.59 Aligned_cols=196 Identities=20% Similarity=0.349 Sum_probs=137.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA 430 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~ 430 (635)
...+++++|-+..++.|..-...+.. +.|..|+||+|++|||||++++++...+ |+.++.+...++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~----G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L------- 91 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ----GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL------- 91 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc----CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh-------
Confidence 45679999999999888655444433 4567899999999999999999999877 555666655443
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH-hCCCCCCEEEEEEeCCCCCCc-------
Q 006700 431 VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-TGDQSRDIVLVLATNRPGDLD------- 502 (635)
Q Consensus 431 ~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~-~~~~~~~viiI~ttN~~~~l~------- 502 (635)
..+..+++.........|||+|++- | ...+.....|..+|.. +...+.|++|.+|||+...++
T Consensus 92 -~~l~~l~~~l~~~~~kFIlf~DDLs-F-------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 92 -GDLPELLDLLRDRPYKFILFCDDLS-F-------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRE 162 (249)
T ss_pred -ccHHHHHHHHhcCCCCEEEEecCCC-C-------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhcc
Confidence 3455666666666667899999974 2 2234445667777755 346788999999999643221
Q ss_pred ----------------HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHH
Q 006700 503 ----------------SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 566 (635)
Q Consensus 503 ----------------~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (635)
-++-+||..+|.|.+|+.++-.+|+..++..+...- ....+...
T Consensus 163 ~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~--------------------~~e~l~~~ 222 (249)
T PF05673_consen 163 DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL--------------------DEEELRQE 222 (249)
T ss_pred CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC--------------------CHHHHHHH
Confidence 244569999999999999999999999998876500 00012233
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Q 006700 567 VIQEAARKTEGFSGREIAKLMASV 590 (635)
Q Consensus 567 ~l~~la~~t~G~sgrdI~~L~~~~ 590 (635)
++.+...+ .|.|||--.+.+..+
T Consensus 223 Al~wa~~r-g~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 223 ALQWALRR-GGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHH
Confidence 44444433 478999888877654
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=2.5e-14 Score=168.68 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=135.7
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc-
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA- 424 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~- 424 (635)
.++.+||.+...+++..++. ....+|++|+||||||||++|+.||..+ +.+++.++++.+.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~--------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG--------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc--------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc
Confidence 46889999988888877654 2233479999999999999999999986 3667778776543
Q ss_pred --cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---
Q 006700 425 --PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 499 (635)
Q Consensus 425 --~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--- 499 (635)
.+.++....+..+|+.+... .++||||||+|.+++.....+. ....+.|...+ ..+.+.+|++|+..+
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g~-~~~a~lLkp~l-----~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEGA-IDAANILKPAL-----ARGELQCIGATTLDEYRK 321 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCCc-ccHHHHhHHHH-----hCCCcEEEEeCCHHHHHH
Confidence 35567778899999988654 4789999999999876543321 22333444333 356789999998654
Q ss_pred --CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 500 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 500 --~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
..++++.+|| ..|.++.|+.++...|++.....+.. ..++. ++++++..++..+.+
T Consensus 322 ~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~------------------~~~v~---i~deal~~i~~ls~~ 379 (821)
T CHL00095 322 HIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEK------------------HHNLS---ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHH------------------HcCCC---CCHHHHHHHHHHhhc
Confidence 4789999999 67899999999999999877655432 11111 566777777766666
Q ss_pred CC
Q 006700 578 FS 579 (635)
Q Consensus 578 ~s 579 (635)
|-
T Consensus 380 yi 381 (821)
T CHL00095 380 YI 381 (821)
T ss_pred cC
Confidence 53
No 153
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=9.2e-14 Score=148.50 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=115.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee-----------ec---
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-----------MM--- 418 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-----------~l--- 418 (635)
.+..|.+||||+.+++.|...+.. +..++.+||+||+|+||+++|..+|+.+-+.-- .+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 455779999999999999876553 334456999999999999999999998732110 00
Q ss_pred ------------cCCCcccch----h--------hHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHH
Q 006700 419 ------------TGGDVAPLG----A--------QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQ 471 (635)
Q Consensus 419 ------------~~~~~~~~~----~--------~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~ 471 (635)
+..++..+. . -....++.+...+. ....+.|++|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------------ 154 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------------ 154 (365)
T ss_pred CCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------------
Confidence 001111010 0 01233444443332 23457899999999872
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHH
Q 006700 472 RSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 472 ~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l 531 (635)
....|.||+.+++.+.+++||++|+.++.+.+.+++|| ..+.|++|+.++...++....
T Consensus 155 ~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 45678888888888888999999999999999999999 899999999999988887653
No 154
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.2e-13 Score=145.72 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=112.3
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC--------eeeccCCCcccch
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD--------YAMMTGGDVAPLG 427 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~--------~~~l~~~~~~~~~ 427 (635)
.|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+++.+.+. +..+...+-...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~ 74 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIG 74 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCC
Confidence 579999999999988766532 3344568999999999999999999987432 2222211101122
Q ss_pred hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHH
Q 006700 428 AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA 504 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~ 504 (635)
...++.+...+. ....+.|++||++|.+. ....|.||..+++++.+++||++|+.++.+.+.
T Consensus 75 ---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 75 ---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred ---HHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 233444444332 23456799999999873 346788888899999999999999999999999
Q ss_pred HHccccceEecCCCCHHHHHHHHHHHH
Q 006700 505 ITDRIDEVIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 505 l~~R~d~~i~~~~p~~~er~~Il~~~l 531 (635)
++||+ .++.|++|+.++....+...+
T Consensus 140 I~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 99999 899999999998877766543
No 155
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.57 E-value=3.1e-13 Score=142.58 Aligned_cols=248 Identities=12% Similarity=0.090 Sum_probs=157.1
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC-------CCeeecc----
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMT---- 419 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-------~~~~~l~---- 419 (635)
..+..+|..|||+++++..|...+. .+...++||+||+|||||++++.++..+. .+|....
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~--------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~ 81 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVI--------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPE 81 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhcc--------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChh
Confidence 3567789999999999998865432 23346899999999999999999988873 2332000
Q ss_pred -----------CC----------Ccccc-hhhHHHHH------HHHHHHHh--------hcCCcEEEEecCchhhhhhcc
Q 006700 420 -----------GG----------DVAPL-GAQAVTKI------HEIFDWAK--------KSKKGLLLFIDEADAFLCERN 463 (635)
Q Consensus 420 -----------~~----------~~~~~-~~~~~~~l------~~~f~~a~--------~~~~~~vL~iDEid~l~~~r~ 463 (635)
++ .+..+ .+-+...+ ...|.... ....+++|||||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL----- 156 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL----- 156 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-----
Confidence 00 00000 00011111 11111110 1123579999999988
Q ss_pred cccCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEEeCCCC-CCcHHHHccccceEecCCCC-HHHHHHHHHHHH
Q 006700 464 SIHMSEAQRSALNALLFRT-------G---DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPR-EEERFKLLKLYL 531 (635)
Q Consensus 464 ~~~~~~~~~~~L~~ll~~~-------~---~~~~~viiI~ttN~~~-~l~~~l~~R~d~~i~~~~p~-~~er~~Il~~~l 531 (635)
+...+..|...+..- + ..+.++++|+|.|..+ .+++.+++||...+.+..|+ .+.+.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 455566665555431 1 1345788888888655 69999999999999999998 588999998864
Q ss_pred HhhcCCCCCC-------CCccchhhhhhhhhhhhhccCCCHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 006700 532 KKYLCSDEGD-------SSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK---TEGFSGREIAKLMASVQAAVYARPDCV 601 (635)
Q Consensus 532 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---t~G~sgrdI~~L~~~~q~aa~~s~~~~ 601 (635)
.... .+.. .... ....+...+..+.-..+++..+.+|+.. +.--|+|--..++.++++.|+..+...
T Consensus 233 ~~~~--~~~~~~~~~~~~~~~-~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~ 309 (350)
T CHL00081 233 SFDK--NPQEFREKYEESQEE-LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTE 309 (350)
T ss_pred cccc--Chhhhhhhhcccccc-CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 2110 0000 0000 1112222222233334788887777654 333467777788999999999999999
Q ss_pred cCHHHHHHHHHHHHhhh
Q 006700 602 LDSQLFREVVEYKVEEH 618 (635)
Q Consensus 602 lt~~~i~~~l~~~~~~~ 618 (635)
++.+||..+....++-.
T Consensus 310 V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 310 VTPKDIFKVITLCLRHR 326 (350)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999888733
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.56 E-value=1.2e-13 Score=157.22 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=138.1
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
+.+|++++|++.....+...+ .. ..+.+++|+||||||||++|+.++..+ +.+|+.++|..+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~i---a~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKV---AS-----PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHH---hc-----CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 457899999999888765433 21 123469999999999999999998766 346888888765
Q ss_pred ccchhhH----H--------HHHHHHHHHHh---------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh
Q 006700 424 APLGAQA----V--------TKIHEIFDWAK---------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 482 (635)
Q Consensus 424 ~~~~~~~----~--------~~l~~~f~~a~---------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~ 482 (635)
....... . ......+.... ....+++|||||++.| +...+..|..++..-
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------d~~~Q~~Ll~~Le~~ 292 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------DPLLQNKLLKVLEDK 292 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC---------CHHHHHHHHHHHhhC
Confidence 3100000 0 00000111000 0113679999999977 455566666665431
Q ss_pred C-------------------------CCCCCEEEEEE-eCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 483 G-------------------------DQSRDIVLVLA-TNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 483 ~-------------------------~~~~~viiI~t-tN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
. ..+.++++|++ ++.++.+++++++|| ..+.|++++.+++..|++.++.....
T Consensus 293 ~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~~v 371 (615)
T TIGR02903 293 RVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKINV 371 (615)
T ss_pred eEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 0 01234666664 456888999999999 57789999999999999998875422
Q ss_pred CCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-Hc------C-CCCccCHHHHH
Q 006700 537 SDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV-YA------R-PDCVLDSQLFR 608 (635)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa-~~------s-~~~~lt~~~i~ 608 (635)
.++++++..|+.++ |.+|..-+++..+...+ +. . ....||.+++.
T Consensus 372 -------------------------~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~ 424 (615)
T TIGR02903 372 -------------------------HLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVY 424 (615)
T ss_pred -------------------------CCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHH
Confidence 27888999998774 45654444333222221 11 1 12368999999
Q ss_pred HHHHHH
Q 006700 609 EVVEYK 614 (635)
Q Consensus 609 ~~l~~~ 614 (635)
+++..-
T Consensus 425 ~~l~~~ 430 (615)
T TIGR02903 425 EVIQIS 430 (615)
T ss_pred HHhCCC
Confidence 988754
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=1.3e-13 Score=144.65 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=114.4
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe----------eeccCCCccc
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY----------AMMTGGDVAP 425 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~----------~~l~~~~~~~ 425 (635)
.|++|+||+.+++.|...+.. +..++.+||+||+|+||+++|.++|+.+-+.- ...+.+|+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 478999999999999877653 33345799999999999999999999873321 1222222210
Q ss_pred ch------h--------------------hHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHH
Q 006700 426 LG------A--------------------QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 476 (635)
Q Consensus 426 ~~------~--------------------~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~ 476 (635)
+. + -....++.+...+. ....+.|++||++|.|. ....|
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~~aaN 142 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------EAAAN 142 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------HHHHH
Confidence 00 0 01123444444433 23467899999999873 35678
Q ss_pred HHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHH
Q 006700 477 ALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 477 ~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l 531 (635)
.||..+++++ +++||++|+.++.+.|.++||+ ..+.|++|+.++...++....
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 8888888887 7889999999999999999999 999999999999988888653
No 158
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-13 Score=146.02 Aligned_cols=222 Identities=18% Similarity=0.265 Sum_probs=155.9
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----eeeccCCCccc-------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-----YAMMTGGDVAP------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-----~~~l~~~~~~~------- 425 (635)
+.+.+-++..+.+..+... ... +..|.|+++|||||||||.+++.+++++... ++++||-....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~---~~~-~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAP---ALR-GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHH---Hhc-CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3366666666666554332 223 3333469999999999999999999998433 78888866432
Q ss_pred ----------chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe
Q 006700 426 ----------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT 495 (635)
Q Consensus 426 ----------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt 495 (635)
.|......+..+++.........||+|||+|.|..+.. .+|..|+........++.+|+.+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEe
Confidence 12223334444555555556678999999999975322 67777777776666778999999
Q ss_pred CCC---CCCcHHHHcccc-ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHH
Q 006700 496 NRP---GDLDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 571 (635)
Q Consensus 496 N~~---~~l~~~l~~R~d-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 571 (635)
|.. +.+++.+.++|. ..|.||+++.+|...|+....+.... ...+++..+..+
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~-----------------------~~~~~~~vl~li 220 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFS-----------------------AGVIDDDVLKLI 220 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhcc-----------------------CCCcCccHHHHH
Confidence 865 478999999775 45899999999999999998875432 113778888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHc---CCCCccCHHHHHHHHHHHHh
Q 006700 572 ARKTEGFSGREIAKLMASVQAAVYA---RPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 572 a~~t~G~sgrdI~~L~~~~q~aa~~---s~~~~lt~~~i~~~l~~~~~ 616 (635)
|....-.+| |.+..+..+..++.. .+...++.+++..+.+..-.
T Consensus 221 a~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 221 AALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 766533333 888888777766543 46789999999999554443
No 159
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.56 E-value=4.7e-14 Score=158.11 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=146.5
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hhhH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQA 430 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~~~ 430 (635)
.+.++||++...+.+.+.+..+..... +|||+|++|||||++|++|+..+ +.+|+.++|..+... ....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~------pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDL------NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 578899999999999888887765544 39999999999999999999986 468999999987531 1111
Q ss_pred HHHHH-----------HHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEE
Q 006700 431 VTKIH-----------EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVL 491 (635)
Q Consensus 431 ~~~l~-----------~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~vii 491 (635)
++... +.|.. ..+++||||||+.| +...+..|..+++.-. ....++.|
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~----a~gGtL~ldeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFEL----ADGGTLFLDEIGEL---------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred cCccccccCCCcccCCcchhh----cCCCEEEecChhhC---------CHHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 11111 12222 23678999999988 4566666666665421 12247899
Q ss_pred EEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhc
Q 006700 492 VLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITI 560 (635)
Q Consensus 492 I~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (635)
|++||.. ..+...+..|+ ..+.+..|+..+|.. |+.+|+.++.. ..+...
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~------------------~~~~~~ 386 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRA------------------RLGLRS 386 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHH------------------HcCCCC
Confidence 9999853 35788888888 556666776666544 66677766532 111122
Q ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCC------ccCHHHH
Q 006700 561 KDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC------VLDSQLF 607 (635)
Q Consensus 561 ~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~------~lt~~~i 607 (635)
..++++++..|..+ .|+| +|+.|-+.++.++..+... .|+.+++
T Consensus 387 ~~~s~~a~~~L~~y--~WPG-NvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l 436 (509)
T PRK05022 387 LRLSPAAQAALLAY--DWPG-NVRELEHVISRAALLARARGAGRIVTLEAQHL 436 (509)
T ss_pred CCCCHHHHHHHHhC--CCCC-cHHHHHHHHHHHHHhcCCCccCccceecHHHc
Confidence 24899999999966 7777 8888888888887765443 4555554
No 160
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.55 E-value=4.7e-14 Score=157.20 Aligned_cols=220 Identities=21% Similarity=0.296 Sum_probs=148.3
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--~ 426 (635)
.....|++++|.+...+.+...+..+..... +|||+|++||||+++|++|+..+ +.||+.++|+.+.. +
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~~~~------pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ll 279 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARSDA------TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLL 279 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHH
Confidence 3346789999999999998888877665544 39999999999999999999876 56999999998754 1
Q ss_pred hhhHHHHHHHHHHHHh--------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEE
Q 006700 427 GAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIV 490 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~vi 490 (635)
.....+...+.|..+. ....++.||||||+.| +...+..|..+|+.-. ....++.
T Consensus 280 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvR 350 (526)
T TIGR02329 280 EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVPVDVR 350 (526)
T ss_pred HHHhcCCcccccccccccccccchhhcCCceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceeeecce
Confidence 1111121112222111 1123679999999987 5677777777775432 1123568
Q ss_pred EEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHH----HHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh
Q 006700 491 LVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERF----KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559 (635)
Q Consensus 491 iI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (635)
||++||.. ..+...+..|+ ..+.+..|+..+|. .|+.+|+.++.. ...+
T Consensus 351 iIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~------------------~~~~- 410 (526)
T TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAA------------------ALRL- 410 (526)
T ss_pred EEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHH------------------HcCC-
Confidence 99998754 24666777788 45566666665554 477777776532 1111
Q ss_pred ccCCCHHHHHH-------HHHHcCCCCHHHHHHHHHHHHHHHHcC---CCCccCHHHHHHHH
Q 006700 560 IKDLSDNVIQE-------AARKTEGFSGREIAKLMASVQAAVYAR---PDCVLDSQLFREVV 611 (635)
Q Consensus 560 ~~~~~~~~l~~-------la~~t~G~sgrdI~~L~~~~q~aa~~s---~~~~lt~~~i~~~l 611 (635)
.++++++.. |..+ .|+| +++.|-+.++.++... ....|+.+++....
T Consensus 411 --~~~~~a~~~~~~~~~~L~~y--~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 411 --PDSEAAAQVLAGVADPLQRY--PWPG-NVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred --CCCHHHHHHhHHHHHHHHhC--CCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 267777666 6644 6777 9999999888887653 34678888875443
No 161
>PRK09087 hypothetical protein; Validated
Probab=99.55 E-value=2.4e-13 Score=136.25 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=128.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhH
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~ 430 (635)
..+..+|+++|..+.-...+..+.... ..+.+.++|+||+|||||+|+++++...+..|+... ++. .
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~~------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~---~-- 80 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHWP------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG---S-- 80 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhcc------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc---h--
Confidence 345668999886443333443221111 112234999999999999999999987665544321 111 1
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCC---CCcHHHH
Q 006700 431 VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPG---DLDSAIT 506 (635)
Q Consensus 431 ~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~---~l~~~l~ 506 (635)
..+.... ..+|+|||++.+.. + +..|..++....+. +. .+|+|++ .|. ...+.++
T Consensus 81 -----~~~~~~~----~~~l~iDDi~~~~~-------~---~~~lf~l~n~~~~~-g~-~ilits~~~p~~~~~~~~dL~ 139 (226)
T PRK09087 81 -----DAANAAA----EGPVLIEDIDAGGF-------D---ETGLFHLINSVRQA-GT-SLLMTSRLWPSSWNVKLPDLK 139 (226)
T ss_pred -----HHHHhhh----cCeEEEECCCCCCC-------C---HHHHHHHHHHHHhC-CC-eEEEECCCChHHhccccccHH
Confidence 1111111 24788999997521 1 12233333333222 23 3555554 333 2368899
Q ss_pred cccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHH
Q 006700 507 DRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIA 584 (635)
Q Consensus 507 ~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~ 584 (635)
+||. .++.+.+|+.+++..|++.++..... .++++++..|+.++.| +.+.+.
T Consensus 140 SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-------------------------~l~~ev~~~La~~~~r-~~~~l~ 193 (226)
T PRK09087 140 SRLKAATVVEIGEPDDALLSQVIFKLFADRQL-------------------------YVDPHVVYYLVSRMER-SLFAAQ 193 (226)
T ss_pred HHHhCCceeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhhh-hHHHHH
Confidence 9985 78999999999999999999876433 3899999999999876 555555
Q ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 585 KLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 585 ~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
.+++.+...+... ...||...++++++..
T Consensus 194 ~~l~~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 194 TIVDRLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 5556666555543 3669999999999875
No 162
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.54 E-value=1.4e-13 Score=159.91 Aligned_cols=210 Identities=22% Similarity=0.272 Sum_probs=147.8
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~ 428 (635)
...|+++||.+...+.+...+..+..... +|||+|++|||||++|++|+..+ +.+|+.++|..+... ..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhh
Confidence 35788999999998888877776654433 49999999999999999999876 568999999876431 11
Q ss_pred hHHH-----------HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCE
Q 006700 429 QAVT-----------KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDI 489 (635)
Q Consensus 429 ~~~~-----------~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~v 489 (635)
...+ ...+.|..+ .+++||||||+.+ +...+..|..+++.-. ....++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a----~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELA----DKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHHhc----CCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 1111 111223222 3689999999987 4666777777775532 123578
Q ss_pred EEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhh
Q 006700 490 VLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKI 558 (635)
Q Consensus 490 iiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (635)
.||++|+.. ..+...+..|+ ..+.+..|+..+|.+ |+++|+.++.. ..+.
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~------------------~~~~ 573 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIAR------------------RMGR 573 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHH------------------HcCC
Confidence 999999853 35667777788 566777777777655 66777766532 1122
Q ss_pred hccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCH
Q 006700 559 TIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDS 604 (635)
Q Consensus 559 ~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~ 604 (635)
.+..++++++..|..+ .|+| +|+.|-+.++.++..+.+..|+.
T Consensus 574 ~~~~~s~~al~~L~~y--~WPG-NvrEL~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 574 NIDSIPAETLRTLSNM--EWPG-NVRELENVIERAVLLTRGNVLQL 616 (686)
T ss_pred CCCCcCHHHHHHHHhC--CCCC-cHHHHHHHHHHHHHhCCCCcccc
Confidence 2335899999999865 7777 99999999999888776666654
No 163
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-14 Score=151.49 Aligned_cols=209 Identities=22% Similarity=0.267 Sum_probs=136.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCcccc--
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPL-- 426 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~~-- 426 (635)
....++++||.+...+.+.+-+....... .+|||+|++||||+++|+.|+... +.||+.+||+.+...
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~------~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSG------LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCC------CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 34567999998777777666555533222 359999999999999999998654 468999999998762
Q ss_pred hhhHHHHHHHHHHHHhhc-------CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH-----hCC---CCCCEEE
Q 006700 427 GAQAVTKIHEIFDWAKKS-------KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----TGD---QSRDIVL 491 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~-------~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~-----~~~---~~~~vii 491 (635)
..+.+++..+.|..+... ..+++||||||..| +...+..|..+++. ++. ...+|.+
T Consensus 147 ~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L---------P~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRl 217 (403)
T COG1221 147 EAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL---------PPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRL 217 (403)
T ss_pred HHHHhccccceeecccCCcCchheecCCCEEehhhhhhC---------CHhHHHHHHHHHHcCceEecCCCCCcCCCcee
Confidence 223334444444443221 23689999999988 46667777777766 332 4568999
Q ss_pred EEEeCC--CCCCcH--HHHccccceEecCCCCHHHH----HHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCC
Q 006700 492 VLATNR--PGDLDS--AITDRIDEVIEFPLPREEER----FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 563 (635)
Q Consensus 492 I~ttN~--~~~l~~--~l~~R~d~~i~~~~p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (635)
|++||. ++.+-. .+.+|+ ..+.+..|+..+| ..++.+|+..+.. ..++++...
T Consensus 218 i~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~------------------~l~~~~~~~ 278 (403)
T COG1221 218 ICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEAR------------------RLGLPLSVD 278 (403)
T ss_pred eeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHH------------------HcCCCCCCC
Confidence 999874 233334 555544 3445555555444 4477778777654 333444445
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q 006700 564 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 598 (635)
Q Consensus 564 ~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~ 598 (635)
+++++..|-.+ -|.| +|+.|-+.++.+++...
T Consensus 279 ~~~a~~~L~~y--~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 279 SPEALRALLAY--DWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred CHHHHHHHHhC--CCCC-cHHHHHHHHHHHHHHhc
Confidence 66677776654 3444 77777777777776653
No 164
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.53 E-value=1.2e-13 Score=153.81 Aligned_cols=215 Identities=20% Similarity=0.265 Sum_probs=141.2
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH--------h---CCCeeeccCCC
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK--------S---GLDYAMMTGGD 422 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~--------l---~~~~~~l~~~~ 422 (635)
...|++++|.+...+.+...+..+..+.. +|||+|++||||+++|++|+.. + +.||+.++|+.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~s~~------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaa 288 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYARSSA------AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 288 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeeccc
Confidence 35789999999999998888777665544 3999999999999999999987 3 56999999998
Q ss_pred ccc--chhhHHHHHHHHHHHHh--------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------C
Q 006700 423 VAP--LGAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------D 484 (635)
Q Consensus 423 ~~~--~~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~ 484 (635)
+.. +.....+...+.|..+. ....++.||||||+.| +...+..|..+|+.-. .
T Consensus 289 l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 289 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred CChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEecCCCce
Confidence 754 11111121111222111 1223679999999987 5677777777775422 1
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhh
Q 006700 485 QSRDIVLVLATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKK 553 (635)
Q Consensus 485 ~~~~viiI~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~ 553 (635)
...++.||++||.. ..+.+.+..|+ ..+.+..|...+|.+ |+.+|+.++..
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------------- 421 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLA----------------- 421 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHH-----------------
Confidence 23467899999853 24666777788 567777777766654 67777766422
Q ss_pred hhhhhhccCCCHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC---CCccCHHHHH
Q 006700 554 QQQKITIKDLSDN-------VIQEAARKTEGFSGREIAKLMASVQAAVYARP---DCVLDSQLFR 608 (635)
Q Consensus 554 ~~~~~~~~~~~~~-------~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~---~~~lt~~~i~ 608 (635)
.... .++++ .+..|..+ .|+| +|+.|-+.++.++.... ...|+.+++.
T Consensus 422 -~~~~---~~~~~a~~~~~~a~~~L~~y--~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 422 -ALSA---PFSAALRQGLQQCETLLLHY--DWPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred -HcCC---CCCHHHHHhhHHHHHHHHhC--CCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 0000 13333 33555543 6776 88888888887765422 2456666553
No 165
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.53 E-value=6.9e-13 Score=139.95 Aligned_cols=242 Identities=15% Similarity=0.139 Sum_probs=150.2
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-------CCCee------------
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------GLDYA------------ 416 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-------~~~~~------------ 416 (635)
.|..|||+++++..|.-.+- .+...++||.|+||||||+++++|+..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~--------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI--------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred CccccccHHHHHHHHHHHhc--------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 57899999999988743222 1123579999999999999999999887 33322
Q ss_pred -ec--cC-------------CCcccchhhHHHHHHHHHHHHh--------------hcCCcEEEEecCchhhhhhccccc
Q 006700 417 -MM--TG-------------GDVAPLGAQAVTKIHEIFDWAK--------------KSKKGLLLFIDEADAFLCERNSIH 466 (635)
Q Consensus 417 -~l--~~-------------~~~~~~~~~~~~~l~~~f~~a~--------------~~~~~~vL~iDEid~l~~~r~~~~ 466 (635)
.. .. .++. . +.+...+.+..++.. ....+++|||||++.+
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP-~-~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------- 143 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLP-L-GATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------- 143 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCC-C-CCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC--------
Confidence 00 00 0100 0 001111111212111 1123579999999987
Q ss_pred CcHHHHHHHHHHHHHhC----------CCCCCEEEEEEeCCCC-CCcHHHHccccceEecCCCCH-HHHHHHHHHHHHhh
Q 006700 467 MSEAQRSALNALLFRTG----------DQSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKY 534 (635)
Q Consensus 467 ~~~~~~~~L~~ll~~~~----------~~~~~viiI~ttN~~~-~l~~~l~~R~d~~i~~~~p~~-~er~~Il~~~l~~~ 534 (635)
+...+..|..++..-. ..+.++++|+|+|..+ .+++.+++||...+.+++|+. +++.+|+.......
T Consensus 144 -~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~ 222 (337)
T TIGR02030 144 -EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYD 222 (337)
T ss_pred -CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcc
Confidence 4555566555554310 1235688888988655 799999999999999999976 88899998754321
Q ss_pred cCCCC----CCCCccchhhhhhhhhhhhhccCCCHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 535 LCSDE----GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR---KTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 535 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~---~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
..... ...........+...+..+.-..++++.+.+++. .+..-|.|--..|+.++++.|...+...++.+|+
T Consensus 223 ~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv 302 (337)
T TIGR02030 223 ADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDI 302 (337)
T ss_pred cCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 00000 0000000011111122233333478877776664 3433366777788899999999999999999999
Q ss_pred HHHHHHHHh
Q 006700 608 REVVEYKVE 616 (635)
Q Consensus 608 ~~~l~~~~~ 616 (635)
..++...+.
T Consensus 303 ~~~a~~vL~ 311 (337)
T TIGR02030 303 RRVAVLALR 311 (337)
T ss_pred HHHHHHHHH
Confidence 999988886
No 166
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.52 E-value=1.6e-13 Score=158.27 Aligned_cols=216 Identities=15% Similarity=0.209 Sum_probs=151.2
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccc--hh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~--~~ 428 (635)
...|++++|.+.....+...+..+..... +|||+|++||||+++|++|+..+. .+|+.++|..+..- ..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSF------PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHH
Confidence 34689999998888888777776654433 399999999999999999999864 68999999887531 11
Q ss_pred hHHHHH--------HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEE
Q 006700 429 QAVTKI--------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLV 492 (635)
Q Consensus 429 ~~~~~l--------~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----~---~~~~viiI 492 (635)
+..+.. .+.|. ...+++||||||+.| +...+..|..+|+.-. . ...++.||
T Consensus 395 elfg~~~~~~~~~~~g~~~----~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFE----LAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HhcCCCCcCccCCCCCcee----ECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 111100 01121 224689999999987 4667777777764321 0 11268899
Q ss_pred EEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhcc
Q 006700 493 LATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 561 (635)
Q Consensus 493 ~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (635)
+|||.. ..+.+.+..|+ ..+.+..|...+|.. |+.+|+..+.. ..+..+
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~------------------~~~~~~- 521 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEK------------------RFSTRL- 521 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHH------------------HhCCCC-
Confidence 999853 46777788888 667777777776643 66677665432 111112
Q ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 562 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.++++++..|..+ .|.| +|+.|.+.++.++..+.+..|+.+++...+
T Consensus 522 ~~s~~a~~~L~~y--~WPG-NvreL~~~l~~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 522 KIDDDALARLVSY--RWPG-NDFELRSVIENLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred CcCHHHHHHHHcC--CCCC-hHHHHHHHHHHHHHhCCCCeecHHHCchhh
Confidence 3899999999965 6776 999999999998887777788888876554
No 167
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=3.6e-13 Score=131.38 Aligned_cols=145 Identities=23% Similarity=0.342 Sum_probs=105.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCC------------------------eeeccCCCcccchhhHHHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLD------------------------YAMMTGGDVAPLGAQAVTKIHEIFDW 440 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------------~~~l~~~~~~~~~~~~~~~l~~~f~~ 440 (635)
..++.+||+||+|+|||++|+.+++.+.+. +..+... -...+ ...+..+...
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~-~~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE-GQSIK---VDQVRELVEF 87 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc-cCcCC---HHHHHHHHHH
Confidence 344679999999999999999999987432 1111110 00112 2344444444
Q ss_pred Hhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCC
Q 006700 441 AKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 441 a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~ 517 (635)
+.. ...+.|+||||+|.+. . ...+.|+..+++.+.+++||++||.+..+.+++.+|+ .++.|++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~---------~---~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~~ 154 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN---------E---AAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFPP 154 (188)
T ss_pred HccCcccCCeEEEEEechhhhC---------H---HHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCCC
Confidence 333 3456799999999873 2 3456677777877888999999988899999999999 7999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 518 PREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 518 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
|+.++..+++... . ++++++..|+..+.|
T Consensus 155 ~~~~~~~~~l~~~-----g--------------------------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 155 LSEEALLQWLIRQ-----G--------------------------ISEEAAELLLALAGG 183 (188)
T ss_pred CCHHHHHHHHHHc-----C--------------------------CCHHHHHHHHHHcCC
Confidence 9999988777654 1 567889999988877
No 168
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.52 E-value=1.1e-12 Score=129.95 Aligned_cols=208 Identities=22% Similarity=0.300 Sum_probs=147.8
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-CC-------------------
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-GL------------------- 413 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-~~------------------- 413 (635)
+..|+.++++.+....+..+.. ...++|+|||||+|+||-|.+.+|-+++ |.
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~--------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSS--------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcc--------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 3456788888888887765533 2345689999999999999999998887 21
Q ss_pred ---------CeeeccCCCcccchhhHHHHHHHHHHHHh--------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHH
Q 006700 414 ---------DYAMMTGGDVAPLGAQAVTKIHEIFDWAK--------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 476 (635)
Q Consensus 414 ---------~~~~l~~~~~~~~~~~~~~~l~~~f~~a~--------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~ 476 (635)
..+.++.+|.+.... -.+.+++.... ..++..|++|.|+|.+. .+.+..|.
T Consensus 81 lEistvsS~yHlEitPSDaG~~DR---vViQellKevAQt~qie~~~qr~fKvvvi~ead~LT---------~dAQ~aLR 148 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDR---VVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT---------RDAQHALR 148 (351)
T ss_pred EEEEEecccceEEeChhhcCcccH---HHHHHHHHHHHhhcchhhccccceEEEEEechHhhh---------HHHHHHHH
Confidence 123344444443322 22233332221 13467899999999883 44444444
Q ss_pred HHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhh
Q 006700 477 ALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556 (635)
Q Consensus 477 ~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (635)
. .++.+..++.+|+.||....+-++++||+ ..|.+|.|+.++...++...+.+...
T Consensus 149 R---TMEkYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l-------------------- 204 (351)
T KOG2035|consen 149 R---TMEKYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGL-------------------- 204 (351)
T ss_pred H---HHHHHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcc--------------------
Confidence 4 44556788999999999999999999999 99999999999999999999887654
Q ss_pred hhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC-----CCccCHHHHHHHHHHH
Q 006700 557 KITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP-----DCVLDSQLFREVVEYK 614 (635)
Q Consensus 557 ~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~-----~~~lt~~~i~~~l~~~ 614 (635)
.++.+.+..|+..+.| +++..+-.+++....+. ...|-.-||+..+...
T Consensus 205 -----~lp~~~l~rIa~kS~~----nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 205 -----QLPKELLKRIAEKSNR----NLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred -----cCcHHHHHHHHHHhcc----cHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHH
Confidence 2678899999998777 99988877777766532 1344444555555443
No 169
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.51 E-value=7.8e-14 Score=154.23 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=145.6
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccc--hhhH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GAQA 430 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~--~~~~ 430 (635)
.+..++|.......+...+....... .+++|+|++||||+++|+.++..+. .+|+.++|..+..- ....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~l 210 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSD------ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESEL 210 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCC------CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHh
Confidence 45678888877777776665544322 2499999999999999999998864 68999999886431 1110
Q ss_pred HHHHHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEe
Q 006700 431 VTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 495 (635)
Q Consensus 431 ~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~tt 495 (635)
.+.....|..+. ....+++|||||++.| +...+..|..++..-. ....++.||+||
T Consensus 211 fg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~ 281 (445)
T TIGR02915 211 FGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL---------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCAT 281 (445)
T ss_pred cCCCCCCcCCCccCCCCceeECCCCEEEEechhhC---------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEec
Confidence 010000111100 1133679999999988 4666777766665421 112378999999
Q ss_pred CCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 496 NRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 496 N~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
+.. ..+.+.+..|+ ..+.+..|+..+|.+ |+.+|+..+.. ..+.....++
T Consensus 282 ~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~ 342 (445)
T TIGR02915 282 NQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFAR------------------ELKRKTKGFT 342 (445)
T ss_pred CCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHH------------------HhCCCCCCCC
Confidence 864 46778888888 567777777766665 66677666532 1122223589
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
++++..|..+ .|+| +++.|.+.++.++..+.+..|+.+++
T Consensus 343 ~~a~~~L~~~--~wpg-NvreL~~~i~~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 343 DDALRALEAH--AWPG-NVRELENKVKRAVIMAEGNQITAEDL 382 (445)
T ss_pred HHHHHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 9999999966 6776 99999999999988777777887765
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.51 E-value=9.6e-13 Score=140.26 Aligned_cols=228 Identities=19% Similarity=0.287 Sum_probs=149.4
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC-----CCeeeccCCCcc
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMTGGDVA 424 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-----~~~~~l~~~~~~ 424 (635)
...+..+|+++|..+....+.........++ +.+++.++||||+|+|||+|++++++... ..+++++..++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~---g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP---GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc---CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 3578889999988777666665444433332 23556699999999999999999998872 234554443322
Q ss_pred c-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC--
Q 006700 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGD-- 500 (635)
Q Consensus 425 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~-- 500 (635)
. +.......-..-|.. .+ .-.+|+||+++.+.++... .......+|.+. ... + .||+|+. .|..
T Consensus 156 ~~~v~a~~~~~~~~Fk~--~y-~~dlllIDDiq~l~gk~~~---qeefFh~FN~l~----~~~-k-qIvltsdr~P~~l~ 223 (408)
T COG0593 156 NDFVKALRDNEMEKFKE--KY-SLDLLLIDDIQFLAGKERT---QEEFFHTFNALL----ENG-K-QIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHHHhhhHHHHHH--hh-ccCeeeechHhHhcCChhH---HHHHHHHHHHHH----hcC-C-EEEEEcCCCchhhc
Confidence 1 110100111112222 22 3568999999988654221 122333344443 222 2 5666765 4544
Q ss_pred -CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 501 -LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 501 -l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
+.+.+.|||. .++.+.+|+.+.|..||......... .++++++..|+.....
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~-------------------------~i~~ev~~~la~~~~~ 278 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI-------------------------EIPDEVLEFLAKRLDR 278 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHhhc
Confidence 5599999986 67889999999999999997665443 3899999999998766
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhh
Q 006700 578 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 578 ~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
+.|++..+++.+.+.+...+ ..||.+.+.+++.+......
T Consensus 279 -nvReLegaL~~l~~~a~~~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 279 -NVRELEGALNRLDAFALFTK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred -cHHHHHHHHHHHHHHHHhcC-ccCcHHHHHHHHHHhhcccc
Confidence 66677766766666665544 37999999999999876544
No 171
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.51 E-value=1.1e-12 Score=150.26 Aligned_cols=241 Identities=18% Similarity=0.234 Sum_probs=150.7
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-------C----------------
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-------G---------------- 412 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-------~---------------- 412 (635)
.|..|||++.++..+.-.+. +. ...+|||+||||||||++|++|+..+ |
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~-----~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP-----RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC-----CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 57899999999987753322 11 12469999999999999999999988 2
Q ss_pred ------------CCeeeccCCCccc--chhhHHHHHHHHHHHH--------hhcCCcEEEEecCchhhhhhcccccCcHH
Q 006700 413 ------------LDYAMMTGGDVAP--LGAQAVTKIHEIFDWA--------KKSKKGLLLFIDEADAFLCERNSIHMSEA 470 (635)
Q Consensus 413 ------------~~~~~l~~~~~~~--~~~~~~~~l~~~f~~a--------~~~~~~~vL~iDEid~l~~~r~~~~~~~~ 470 (635)
.+|+.+.++.... +|+. .+...+..- .....++||||||++.| +..
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------~~~ 141 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGATEDRVVGSL---DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------DDH 141 (633)
T ss_pred hhhcccccccCCCCeeeCCCCCcHHHcCCcc---cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------CHH
Confidence 2344333321110 1110 011111000 01123579999999988 455
Q ss_pred HHHHHHHHHHHhC----------CCCCCEEEEEEeCCC-CCCcHHHHccccceEecCCCC-HHHHHHHHHHHHHhhcCCC
Q 006700 471 QRSALNALLFRTG----------DQSRDIVLVLATNRP-GDLDSAITDRIDEVIEFPLPR-EEERFKLLKLYLKKYLCSD 538 (635)
Q Consensus 471 ~~~~L~~ll~~~~----------~~~~~viiI~ttN~~-~~l~~~l~~R~d~~i~~~~p~-~~er~~Il~~~l~~~~~~~ 538 (635)
.+..|..++..-. ..+.+++||+|+|.. ..+.+.+++||+.+|.++.+. .+++..|+...+.....
T Consensus 142 ~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~-- 219 (633)
T TIGR02442 142 LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD-- 219 (633)
T ss_pred HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC--
Confidence 5666655554210 123578999999964 468999999999989998775 57788888765432111
Q ss_pred CCCCCccchh-------hhhhhhhhhhhccCCCHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 006700 539 EGDSSSLKWG-------HLFKKQQQKITIKDLSDNVIQEAARKT--EGF-SGREIAKLMASVQAAVYARPDCVLDSQLFR 608 (635)
Q Consensus 539 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~-sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~ 608 (635)
+ ......|. +.+......+....++++.+..|+..+ -|. |.|-...++..+++.|...+...++.+||.
T Consensus 220 ~-~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~ 298 (633)
T TIGR02442 220 P-EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVR 298 (633)
T ss_pred c-HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHH
Confidence 0 00000110 111111112222347888888887665 355 466667788888888888888999999999
Q ss_pred HHHHHHHhhhh
Q 006700 609 EVVEYKVEEHH 619 (635)
Q Consensus 609 ~~l~~~~~~~~ 619 (635)
.++...+.-..
T Consensus 299 ~A~~lvL~hR~ 309 (633)
T TIGR02442 299 EAAELVLPHRR 309 (633)
T ss_pred HHHHHHhhhhc
Confidence 99999987433
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=99.50 E-value=5.9e-13 Score=153.86 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=134.0
Q ss_pred eEEEec--CCCCChHHHHHHHHHHh-----CCCeeeccCCCcccchhhHHHHHHHHHHHHhhc-----CCcEEEEecCch
Q 006700 389 NMLFYG--PPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKS-----KKGLLLFIDEAD 456 (635)
Q Consensus 389 ~iLL~G--ppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~-----~~~~vL~iDEid 456 (635)
+-++.| |++.||||+|++||+.+ +.+++.+|+++.... ..++.++..+... .++.|+||||+|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi-----d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH-----HHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 456779 99999999999999998 557899999874322 2344443332211 135799999999
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 457 AFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 457 ~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
.|. . ...+.|+..++.++.++.||++||.+..+.++++||| ..+.|++|+.++....+...+.....
T Consensus 641 ~Lt---------~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 641 ALT---------Q---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred cCC---------H---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 883 2 3566777777888889999999999999999999999 99999999999999988888765432
Q ss_pred CCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 006700 537 SDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREV 610 (635)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~ 610 (635)
.++++.+..|+..+.| |++.+++.++.++... ..||.+++..+
T Consensus 708 -------------------------~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~--~~It~~~V~~~ 750 (846)
T PRK04132 708 -------------------------ELTEEGLQAILYIAEG----DMRRAINILQAAAALD--DKITDENVFLV 750 (846)
T ss_pred -------------------------CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 2788999999999999 9999999998876543 34666655543
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=8.9e-13 Score=139.10 Aligned_cols=134 Identities=27% Similarity=0.345 Sum_probs=98.4
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCee----------------eccCCCcccc---h---hhHHHHHHHHHHHH
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA----------------MMTGGDVAPL---G---AQAVTKIHEIFDWA 441 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~----------------~l~~~~~~~~---~---~~~~~~l~~~f~~a 441 (635)
+..++.+||+||+|+|||++|+.+|+.+.+.-- .-+.+|+..+ + .-....++.+...+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 444567999999999999999999999854210 0011111111 0 01233444444443
Q ss_pred h---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCC
Q 006700 442 K---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 442 ~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p 518 (635)
. ...++.|++||++|.|. ....|.||..+++++.+++||++|+.++.+.|.++||| ..+.|++|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~ 165 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACPLP 165 (328)
T ss_pred hhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCCCc
Confidence 3 33457899999999883 46788999999999999999999999999999999999 88999999
Q ss_pred CHHHHHHHHHHH
Q 006700 519 REEERFKLLKLY 530 (635)
Q Consensus 519 ~~~er~~Il~~~ 530 (635)
+.++....+...
T Consensus 166 ~~~~~~~~L~~~ 177 (328)
T PRK05707 166 SNEESLQWLQQA 177 (328)
T ss_pred CHHHHHHHHHHh
Confidence 999888777654
No 174
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.49 E-value=6.7e-13 Score=140.25 Aligned_cols=147 Identities=26% Similarity=0.381 Sum_probs=105.4
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC------------------------CC
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG------------------------LD 414 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~------------------------~~ 414 (635)
++++.......+...+.... ..++.+||+||||||||++|.+||+.+. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 45566666555554433211 1122499999999999999999999986 35
Q ss_pred eeeccCCCcccc--hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEE
Q 006700 415 YAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLV 492 (635)
Q Consensus 415 ~~~l~~~~~~~~--~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI 492 (635)
|+.++.++.... ..+....+...+.......+..|++|||+|.+. .+..+.++..+++++.+++||
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhccCCCCeEEE
Confidence 666766665442 333344444443333223567899999999874 367888999999999999999
Q ss_pred EEeCCCCCCcHHHHccccceEecCCCCHHHHH
Q 006700 493 LATNRPGDLDSAITDRIDEVIEFPLPREEERF 524 (635)
Q Consensus 493 ~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~ 524 (635)
++||.+..+-+.+.||| ..+.|++|+.....
T Consensus 144 l~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i 174 (325)
T COG0470 144 LITNDPSKILPTIRSRC-QRIRFKPPSRLEAI 174 (325)
T ss_pred EEcCChhhccchhhhcc-eeeecCCchHHHHH
Confidence 99999999999999999 89999886554333
No 175
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.47 E-value=8e-13 Score=137.32 Aligned_cols=102 Identities=27% Similarity=0.297 Sum_probs=65.1
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCcHHHHccccceEe
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAITDRIDEVIE 514 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~------------~~~l~~~l~~R~d~~i~ 514 (635)
|+||||||++.| +-.....|+..+ +... .-+||++||+ |.-++..|++|+ .+|.
T Consensus 279 pGVLFIDEvHmL---------DiEcFsfLnral---Es~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~ 344 (398)
T PF06068_consen 279 PGVLFIDEVHML---------DIECFSFLNRAL---ESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIR 344 (398)
T ss_dssp E-EEEEESGGGS---------BHHHHHHHHHHH---TSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEE
T ss_pred cceEEecchhhc---------cHHHHHHHHHHh---cCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEE
Confidence 469999999987 344445555554 3322 3478888884 456889999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 006700 515 FPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLM 587 (635)
Q Consensus 515 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 587 (635)
..+++.++..+|+...++.... .+++++++.|+......|-|---+|+
T Consensus 345 t~py~~~ei~~Il~iR~~~E~v-------------------------~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 345 TKPYSEEEIKQILKIRAKEEDV-------------------------EISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp E----HHHHHHHHHHHHHHCT---------------------------B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred CCCCCHHHHHHHHHhhhhhhcC-------------------------cCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 9999999999999999987554 38899999998775555544433333
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=1.5e-12 Score=138.05 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=111.3
Q ss_pred cCCcccc-ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe--ee-----------c---
Q 006700 356 NNGDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY--AM-----------M--- 418 (635)
Q Consensus 356 ~~~~vig-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~--~~-----------l--- 418 (635)
.|+.|+| |+.+.+.|...+.. +..++.+||+||+|+|||++|+.+++.+-+.- -. +
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 3678888 99999988776542 34455689999999999999999999874321 00 0
Q ss_pred cCCCcccchh----hHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 006700 419 TGGDVAPLGA----QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 491 (635)
Q Consensus 419 ~~~~~~~~~~----~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vii 491 (635)
+..|+..+.. -....++.+..... ....+.|++|||+|.+. ....|.||..+++++.++++
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcCCCCCceE
Confidence 0111111110 11234444444433 23456799999999873 44678899999999999999
Q ss_pred EEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHH
Q 006700 492 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 528 (635)
Q Consensus 492 I~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~ 528 (635)
|++|+.+..+.+.++||+ .+++|++|+.++...++.
T Consensus 144 Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 999999999999999999 999999999998866665
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.46 E-value=1.4e-11 Score=126.74 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=126.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC-Ceee--ccCCCccc----------chh--------hHHHHHHHHHHHHhhcCCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL-DYAM--MTGGDVAP----------LGA--------QAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~-~~~~--l~~~~~~~----------~~~--------~~~~~l~~~f~~a~~~~~~ 447 (635)
.++|+||+|+|||++++.++..+.. .+.. +....... ++. .....+...+......+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999998752 2211 11111100 000 0111222222222234456
Q ss_pred EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC--CC----CcHHHHccccceEecCCCCHH
Q 006700 448 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--GD----LDSAITDRIDEVIEFPLPREE 521 (635)
Q Consensus 448 ~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~--~~----l~~~l~~R~d~~i~~~~p~~~ 521 (635)
.||+|||++.+. ......+..+..........+.||++.... +. -...+.+|+...+++++++.+
T Consensus 125 ~vliiDe~~~l~---------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 125 ALLVVDEAQNLT---------PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred eEEEEECcccCC---------HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 899999999872 333444444433222233344455554321 11 123567788889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 006700 522 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 601 (635)
Q Consensus 522 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~ 601 (635)
+...++...+..... .. . ..++++.++.|...|.|+. +.|..++..+...++..+...
T Consensus 196 e~~~~l~~~l~~~g~-~~-----------------~---~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~ 253 (269)
T TIGR03015 196 ETREYIEHRLERAGN-RD-----------------A---PVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKRE 253 (269)
T ss_pred HHHHHHHHHHHHcCC-CC-----------------C---CCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCC
Confidence 999999988875432 00 0 1278999999999999965 579999998888887778889
Q ss_pred cCHHHHHHHHHHH
Q 006700 602 LDSQLFREVVEYK 614 (635)
Q Consensus 602 lt~~~i~~~l~~~ 614 (635)
||.++|..++...
T Consensus 254 i~~~~v~~~~~~~ 266 (269)
T TIGR03015 254 IGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998874
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=4.2e-12 Score=137.74 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=137.9
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCC--cccchhhH-HH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGD--VAPLGAQA-VT 432 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~--~~~~~~~~-~~ 432 (635)
..++|.+++.+.+...+.. ..++||+||||||||++|++|+..++. +|..+.+.. ...+.|.. ..
T Consensus 20 ~~i~gre~vI~lll~aala----------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~ 89 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 89 (498)
T ss_pred hhccCcHHHHHHHHHHHcc----------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh
Confidence 5688999998888655432 135999999999999999999998753 344333321 11111110 11
Q ss_pred HH--HHHHHHHhh--cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----C---CCCCEEEEEEeCCCC--
Q 006700 433 KI--HEIFDWAKK--SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D---QSRDIVLVLATNRPG-- 499 (635)
Q Consensus 433 ~l--~~~f~~a~~--~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~---~~~~viiI~ttN~~~-- 499 (635)
.. .+.|..... .....+||+|||+.+ +...+..|..++..-. . .....+||+|||...
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~ 160 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEA 160 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccC---------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCccc
Confidence 11 112211100 001238999999866 3455555555543311 0 011124555667432
Q ss_pred -CCcHHHHccccceEecCCCC-HHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--
Q 006700 500 -DLDSAITDRIDEVIEFPLPR-EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-- 575 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~-~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-- 575 (635)
.+.+++.+||-..+.+|+|+ .++...|+...........+. ......-.+..-+.. +.-..+++..+++|....
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~-~~vis~eel~~lq~~-v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPA-SLQITDEEYQQWQKE-IGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcc-cCCCCHHHHHHHHHH-hcceeCCHHHHHHHHHHHHH
Confidence 34569999997889999997 456677777642211000000 111111112111111 111237777777665442
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 576 -------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 576 -------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
...|+|-..+++..+++.|+.++...++++|+. ++...+.
T Consensus 239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 137999999999999999999999999999999 7776665
No 179
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.45 E-value=4.9e-13 Score=148.94 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=148.7
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hhhH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQA 430 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~~~ 430 (635)
.+.+++|.......+...+........ ++||+|++|||||++|++++..+ +.+|+.++|+.+... ....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSI------SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCC------eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHh
Confidence 467899988888777776665443332 49999999999999999999987 468999999887431 1111
Q ss_pred HHHHHHHHHHH-------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEEe
Q 006700 431 VTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 495 (635)
Q Consensus 431 ~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----~---~~~~viiI~tt 495 (635)
.+...+.|..+ .....++.|||||++.+ +...+..|..+++.-. . ...++.||+||
T Consensus 210 fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~ 280 (469)
T PRK10923 210 FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM---------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAAT 280 (469)
T ss_pred cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC---------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeC
Confidence 11111111100 01223678999999987 4566666666665421 1 12467899999
Q ss_pred CCC-------CCCcHHHHccccceEecCCCCHHHH----HHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 496 NRP-------GDLDSAITDRIDEVIEFPLPREEER----FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 496 N~~-------~~l~~~l~~R~d~~i~~~~p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
+.. ..+.+.+..|| ..+.+..|...+| ..|+.+|+..+.. ..+..+..++
T Consensus 281 ~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~ 341 (469)
T PRK10923 281 HQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAAR------------------ELGVEAKLLH 341 (469)
T ss_pred CCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHH------------------HcCCCCCCcC
Confidence 853 36788899998 4556666665444 4477777766533 1122233589
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++++..|..+ .|+| +|+.|-+.++.++..+.+..|+.+++...+
T Consensus 342 ~~a~~~L~~~--~wpg-Nv~eL~~~i~~~~~~~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 342 PETEAALTRL--AWPG-NVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCcccHHHCcHhh
Confidence 9999999966 7877 999999999999988888889988875433
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.45 E-value=3.1e-12 Score=140.87 Aligned_cols=204 Identities=20% Similarity=0.251 Sum_probs=136.4
Q ss_pred ccccCCccccChHHHHHHHHHHHHHh--------------------------cccccCCCCceEEEecCCCCChHHHHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATA--------------------------NTKIHQAPFRNMLFYGPPGTGKTMVARE 406 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~--------------------------~~~~~~~p~~~iLL~GppGtGKT~lA~~ 406 (635)
.+..|.++++.+.+-+.+...+.... ......++-+-+|||||||-||||||+.
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 45678888888888777654433211 0111222335789999999999999999
Q ss_pred HHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh-
Q 006700 407 IARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT- 482 (635)
Q Consensus 407 lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~- 482 (635)
+|++.|+.++.||.+|-.... .....+..++..-.. -.+|.+|+|||||-- .....+++..++...
T Consensus 346 iAkqaGYsVvEINASDeRt~~-~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------~~~~Vdvilslv~a~~ 415 (877)
T KOG1969|consen 346 IAKQAGYSVVEINASDERTAP-MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------PRAAVDVILSLVKATN 415 (877)
T ss_pred HHHhcCceEEEecccccccHH-HHHHHHHHHHhhccccccCCCcceEEEecccCC---------cHHHHHHHHHHHHhhc
Confidence 999999999999998843211 111222222222111 145788999999942 234444555554421
Q ss_pred ----CCCCC-------------CEEEEEEeCCCCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 006700 483 ----GDQSR-------------DIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSS 543 (635)
Q Consensus 483 ----~~~~~-------------~viiI~ttN~~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~ 543 (635)
+.... .-.||+.||. ...|+++. -|..+|.|.+|...-..+-|+.++.+...
T Consensus 416 k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m------- 486 (877)
T KOG1969|consen 416 KQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM------- 486 (877)
T ss_pred chhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC-------
Confidence 11110 1258888986 35667765 57799999999998888777777765443
Q ss_pred ccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q 006700 544 SLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 597 (635)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s 597 (635)
..+...|..|+..|++ ||+..+|.+|..+...
T Consensus 487 ------------------r~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 487 ------------------RADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred ------------------CCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 2677789999999999 9999999999988763
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=1.4e-12 Score=135.46 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=98.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chhhH------H----HHHHHHHHHHhhcCCcEEEEecC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQA------V----TKIHEIFDWAKKSKKGLLLFIDE 454 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~~~------~----~~l~~~f~~a~~~~~~~vL~iDE 454 (635)
++|||.||||||||++++.||..++.+++.+++..... +.+.. . .-..+.+.+|.+ .+++||+||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--CCeEEEech
Confidence 46999999999999999999999999999998765432 11111 0 011223444443 468899999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHH-----hCC------CCCCEEEEEEeCCCC------------CCcHHHHccccc
Q 006700 455 ADAFLCERNSIHMSEAQRSALNALLFR-----TGD------QSRDIVLVLATNRPG------------DLDSAITDRIDE 511 (635)
Q Consensus 455 id~l~~~r~~~~~~~~~~~~L~~ll~~-----~~~------~~~~viiI~ttN~~~------------~l~~~l~~R~d~ 511 (635)
+|.. ++.....|+.+|.. +.+ .+.+|+||+|+|..+ .++.++++||-.
T Consensus 143 in~a---------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAG---------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhcc---------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9976 45667788888863 111 345799999999754 478999999966
Q ss_pred eEecCCCCHHHHHHHHHHHH
Q 006700 512 VIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 512 ~i~~~~p~~~er~~Il~~~l 531 (635)
++.+++|+.++-..|+....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhc
Confidence 77999999999999987654
No 182
>PHA02244 ATPase-like protein
Probab=99.43 E-value=4.7e-12 Score=132.95 Aligned_cols=122 Identities=30% Similarity=0.351 Sum_probs=84.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc-ccchh--hHHHHH-HHHHHHHhhcCCcEEEEecCchhhhhhccc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGA--QAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNS 464 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~-~~~~~--~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~r~~ 464 (635)
++||+||||||||++|+++|..++.+|+.+++..- ..+.+ ...+.+ ..-|..+ ...+++|||||++.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A--~~~GgvLiLDEId~a------ 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA--FKKGGLFFIDEIDAS------ 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH--hhcCCEEEEeCcCcC------
Confidence 49999999999999999999999999998874210 00100 000011 1122222 234789999999976
Q ss_pred ccCcHHHHHHHHHHHHH-----hC---CCCCCEEEEEEeCCC-----------CCCcHHHHccccceEecCCCCHHH
Q 006700 465 IHMSEAQRSALNALLFR-----TG---DQSRDIVLVLATNRP-----------GDLDSAITDRIDEVIEFPLPREEE 522 (635)
Q Consensus 465 ~~~~~~~~~~L~~ll~~-----~~---~~~~~viiI~ttN~~-----------~~l~~~l~~R~d~~i~~~~p~~~e 522 (635)
+......|+.++.. .+ ..+.++.||+|+|.+ ..+++++++|| ..|+|++|+..|
T Consensus 193 ---~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 193 ---IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred ---CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 35556667776642 11 134689999999973 46899999999 789999998433
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.42 E-value=3.8e-12 Score=116.88 Aligned_cols=122 Identities=36% Similarity=0.465 Sum_probs=81.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHHHHH---HHHHHHHhhcCCcEEEEecCchhhhh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKI---HEIFDWAKKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~~~l---~~~f~~a~~~~~~~vL~iDEid~l~~ 460 (635)
.++++|+||||||||++++.++..+ +.+++.+++.............. ...+........+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 78888887766543111110000 1112222233457899999999762
Q ss_pred hcccccCcHHHHHHHHHHHHHhCCC---CCCEEEEEEeCCCC--CCcHHHHccccceEecCC
Q 006700 461 ERNSIHMSEAQRSALNALLFRTGDQ---SRDIVLVLATNRPG--DLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 461 ~r~~~~~~~~~~~~L~~ll~~~~~~---~~~viiI~ttN~~~--~l~~~l~~R~d~~i~~~~ 517 (635)
......+..++...... ..++.+|+++|... .+++.+.+||+..+.+++
T Consensus 98 --------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 98 --------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 22233444444444322 46789999999777 788999999988887763
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=6.2e-12 Score=142.07 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=131.7
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec-cCC---Ccc---
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM-TGG---DVA--- 424 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l-~~~---~~~--- 424 (635)
..+..+++|+|++.....|..++...... ..+.+.++|+||||||||++++.+|..++..+... +.. ...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~---~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLE---NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccc---cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccc
Confidence 34667899999999999888776543322 22334599999999999999999999998765441 111 000
Q ss_pred ----------cchhhHHHHHHHHHHHHhh---------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHH-HhCC
Q 006700 425 ----------PLGAQAVTKIHEIFDWAKK---------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLF-RTGD 484 (635)
Q Consensus 425 ----------~~~~~~~~~l~~~f~~a~~---------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~-~~~~ 484 (635)
.........+..++..+.. .....||||||++.++.. . +. .+..+|. ...+
T Consensus 155 ~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~----~lq~lLr~~~~e 225 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TR----ALHEILRWKYVS 225 (637)
T ss_pred ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HH----HHHHHHHHHhhc
Confidence 0011223344444544431 234579999999987532 1 12 3334443 2222
Q ss_pred CCCCEEEEEEeC-CCC--------C------CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccch
Q 006700 485 QSRDIVLVLATN-RPG--------D------LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKW 547 (635)
Q Consensus 485 ~~~~viiI~ttN-~~~--------~------l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~ 547 (635)
...+.||++++ .+. . +.+++++ |+ .+|.|++++.....+.|...+..... ...
T Consensus 226 -~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~-~~~------- 295 (637)
T TIGR00602 226 -IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK-KNG------- 295 (637)
T ss_pred -CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh-ccc-------
Confidence 23344444443 111 1 3478887 66 68999999999999998888876432 000
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q 006700 548 GHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 596 (635)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~ 596 (635)
. .....+++.+..|+..+.| ||+.+++.+|.++..
T Consensus 296 --------~--~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 296 --------E--KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSK 330 (637)
T ss_pred --------c--ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhc
Confidence 0 0001356889999987777 999999999998654
No 185
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.41 E-value=2.7e-11 Score=120.71 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=93.1
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-------------CCCCcHHHHccccceE
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-------------PGDLDSAITDRIDEVI 513 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-------------~~~l~~~l~~R~d~~i 513 (635)
|+||||||++.+ + ...|..|...++..- .-++|++||+ |.-+++.+++|+ .+|
T Consensus 297 PGVLFIDEVhML---------D---iEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHML---------D---IECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LII 362 (456)
T ss_pred CcceEeeehhhh---------h---hHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEE
Confidence 568999999876 1 234444444444333 3467788885 346889999999 888
Q ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006700 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593 (635)
Q Consensus 514 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a 593 (635)
..-+++.++.++|+......... .++++.+..++.....-|-|-.-+|+.-+...
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~~E~l-------------------------~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQVEGL-------------------------QVEEEALDLLAEIGTSTSLRYAVQLLTPASIL 417 (456)
T ss_pred eeccCCHHHHHHHHHHHHhhhcc-------------------------eecHHHHHHHHhhccchhHHHHHHhcCHHHHH
Confidence 88888899999999988765443 27899999999875444555555555444445
Q ss_pred HHcCCCCccCHHHHHHHHHHHHh
Q 006700 594 VYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 594 a~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+...+...|..++++++-+-|..
T Consensus 418 ak~~g~~~i~v~dvee~~~Lf~D 440 (456)
T KOG1942|consen 418 AKTNGRKEISVEDVEEVTELFLD 440 (456)
T ss_pred HHHcCCceeecccHHHHHHHHHh
Confidence 55556678999999999888775
No 186
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.40 E-value=2.6e-13 Score=130.02 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=71.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCC----CeeeccCCCcccchhhHHHHHHHHHHHH---hhcCCcEEEEecCchhh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGL----DYAMMTGGDVAPLGAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAF 458 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~----~~~~l~~~~~~~~~~~~~~~l~~~f~~a---~~~~~~~vL~iDEid~l 458 (635)
|..++||+||+|||||.+|++|++.+.. +++.++++.+.. +.+....+..++..+ .....+.||||||||..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 5668999999999999999999999995 899999888766 111111111222111 01112459999999998
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC
Q 006700 459 LCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVLVLATNRPG 499 (635)
Q Consensus 459 ~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~viiI~ttN~~~ 499 (635)
.+. .+.+.+..-..+.+.||+.++. +..+++||+|||...
T Consensus 81 ~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 664 2222222333556666665531 346899999999653
No 187
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.40 E-value=1.8e-12 Score=132.31 Aligned_cols=213 Identities=18% Similarity=0.285 Sum_probs=156.6
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA 428 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~ 428 (635)
.....|+.+|+.+..++.+..-+..+.....+ +||.|.+||||-++|++.+..+ ..||+-+||..+.....
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAP------LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAP------LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhccCCC------eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 46678999999988888887766666655544 9999999999999999988776 57899999998765221
Q ss_pred hH------H--HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh-----C---CCCCCEEEE
Q 006700 429 QA------V--TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----G---DQSRDIVLV 492 (635)
Q Consensus 429 ~~------~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~-----~---~~~~~viiI 492 (635)
++ . ..-.++|..+. ++.+|||||..+ +...+..|..||+.- + +...+|.||
T Consensus 272 EsElFG~apg~~gk~GffE~An----gGTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HHHHhcCCCCCCCccchhhhcc----CCeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 11 1 22345665554 778999999866 678888888888542 2 123578999
Q ss_pred EEeCCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhcc
Q 006700 493 LATNRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 561 (635)
Q Consensus 493 ~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (635)
+||..+ ..+...+.-|+ .++.+..|...+|.. +.++|+.+... ..++...
T Consensus 339 catq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~------------------elg~p~p 399 (511)
T COG3283 339 CATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSD------------------ELGVPRP 399 (511)
T ss_pred ecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHH------------------HhCCCCC
Confidence 999743 46777888899 888888888877654 66667666544 4445555
Q ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHH
Q 006700 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQ 605 (635)
Q Consensus 562 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~ 605 (635)
.++.+.+..|..+ +|.| ++++|-|.+..++...++..++.+
T Consensus 400 kl~~~~~~~L~~y--~WpG-NVRqL~N~iyRA~s~~Eg~~l~i~ 440 (511)
T COG3283 400 KLAADLLTVLTRY--AWPG-NVRQLKNAIYRALTLLEGYELRIE 440 (511)
T ss_pred ccCHHHHHHHHHc--CCCc-cHHHHHHHHHHHHHHhccCccchh
Confidence 6899999999876 7887 899999988887765555544443
No 188
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.40 E-value=3e-11 Score=123.54 Aligned_cols=222 Identities=21% Similarity=0.263 Sum_probs=147.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---------CCeeeccCCCccc---
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---------LDYAMMTGGDVAP--- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---------~~~~~l~~~~~~~--- 425 (635)
+.-||.+...+.+..+..-+..++.... +++||+|++|.|||++++.+.+... .|++.+....-..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rm--p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRM--PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCC--CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 6789999999999988887776655443 4799999999999999999987652 3555554332211
Q ss_pred ch-------------hhHHHHH-HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 006700 426 LG-------------AQAVTKI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 491 (635)
Q Consensus 426 ~~-------------~~~~~~l-~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vii 491 (635)
+. ......+ ..++...+..+ ..+|+|||++.++..+ ....+.++|.+-....+..-.++.
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGS-----YRKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhccc-----HHHHHHHHHHHHHHhhccCCCeEE
Confidence 00 0111111 12223333333 5799999999987532 234555665554443344455555
Q ss_pred EEEeCC--CCCCcHHHHccccceEecCCCCH-HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHH
Q 006700 492 VLATNR--PGDLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVI 568 (635)
Q Consensus 492 I~ttN~--~~~l~~~l~~R~d~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 568 (635)
|+|-.. .=.-|+.+.+|| ..+.+|.... ++...++..+-..+....+.. ..+.+..
T Consensus 186 vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~--------------------l~~~~la 244 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKPSN--------------------LASPELA 244 (302)
T ss_pred eccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC--------------------CCCHHHH
Confidence 554432 224578999999 7777776654 556677777766665522211 1345566
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 006700 569 QEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 609 (635)
Q Consensus 569 ~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~ 609 (635)
..|-..|+|..| +|..|++.+-..|..++...||.+.++.
T Consensus 245 ~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 245 RRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 889999999887 9999999888888889999999999887
No 189
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=131.81 Aligned_cols=239 Identities=21% Similarity=0.206 Sum_probs=141.9
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-c---chhhHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-P---LGAQAVTK 433 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~---~~~~~~~~ 433 (635)
..++|.+++...+...+.. + +++||.||||||||++|+.+|..++.+|+.+.|.+-. + +|......
T Consensus 24 ~~~~g~~~~~~~~l~a~~~-------~---~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 24 KVVVGDEEVIELALLALLA-------G---GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred CeeeccHHHHHHHHHHHHc-------C---CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhh
Confidence 3477777766665433221 1 3599999999999999999999999999999987532 2 22221111
Q ss_pred H---HHHHHHHhhcCCc---EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----CC-----CCCCEEEEEEeCC-
Q 006700 434 I---HEIFDWAKKSKKG---LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GD-----QSRDIVLVLATNR- 497 (635)
Q Consensus 434 l---~~~f~~a~~~~~~---~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----~~-----~~~~viiI~ttN~- 497 (635)
. ...|.+....-.. +|+|+|||+.. +...+.+|..++... .. .+..+++|+|+|.
T Consensus 94 ~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 1 1112221111111 39999999976 345556666665551 11 2357889999993
Q ss_pred ----CCCCcHHHHccccceEecCCCCHH-HHHHHHHHHHHhhcCC-CCCCCCccchhhhhhhhhhhhhccCCCHHHHHHH
Q 006700 498 ----PGDLDSAITDRIDEVIEFPLPREE-ERFKLLKLYLKKYLCS-DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 571 (635)
Q Consensus 498 ----~~~l~~~l~~R~d~~i~~~~p~~~-er~~Il~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 571 (635)
...+++++++||...+.+++|+.+ +...++.......... ...-.........+..+. .+.-..++++...++
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 243 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK-EVKKVPVSDEVIDYI 243 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh-hhccCCchHHHHHHH
Confidence 346899999999989999999544 4444444332211100 000000011111111111 111123566665554
Q ss_pred HHH---c-------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 572 ARK---T-------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 572 a~~---t-------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
... + .|-|++....++..+.+.+...+......+++.........
T Consensus 244 ~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~ 298 (329)
T COG0714 244 VTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALA 298 (329)
T ss_pred HHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhh
Confidence 322 1 24467888888888888888877788888888887777665
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.38 E-value=3.4e-12 Score=121.48 Aligned_cols=138 Identities=26% Similarity=0.337 Sum_probs=91.0
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee---------------ccCCCcccc
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM---------------MTGGDVAPL 426 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~---------------l~~~~~~~~ 426 (635)
||+.+.+.|..++.. +..++.+||+||+|+||+++|..+++.+-+.-.. ....|+..+
T Consensus 1 gq~~~~~~L~~~~~~-------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC-------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc-------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 567777777665542 3444569999999999999999999987332111 111121111
Q ss_pred hh------hHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006700 427 GA------QAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 497 (635)
Q Consensus 427 ~~------~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~ 497 (635)
.. -....++.+..+.. ...++.|++||++|.|. ....|.||..+++++.++++|++|+.
T Consensus 74 ~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 10 12344445554433 23457899999999873 46788899999999999999999999
Q ss_pred CCCCcHHHHccccceEecCCCC
Q 006700 498 PGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 498 ~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
++.+.+.++||+ ..+.|++++
T Consensus 142 ~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTS-EEEEE----
T ss_pred hHHChHHHHhhc-eEEecCCCC
Confidence 999999999999 888887753
No 191
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.38 E-value=1.6e-11 Score=137.56 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=148.2
Q ss_pred CccccChHHHHHHHHHHHHHhcc-cc---cCCCCceEEEecCCCCChHHHHHHHHHHhCCC-eeeccCCCcccchhhHH-
Q 006700 358 GDIILHPSLQRRIQHLAKATANT-KI---HQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-YAMMTGGDVAPLGAQAV- 431 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~-~~---~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-~~~l~~~~~~~~~~~~~- 431 (635)
..++|++.++..+.-.+-.-... .. +.....|+||+|+||||||++|+.+++.+... |....+.+...+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 56789998877764332211000 00 11112379999999999999999999987543 22211111111100000
Q ss_pred HHHHHHHH---HHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEEEeCCC
Q 006700 432 TKIHEIFD---WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVLATNRP 498 (635)
Q Consensus 432 ~~l~~~f~---~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----------~~~~~viiI~ttN~~ 498 (635)
....+-|. .+.....+++|+|||++.+ +...+..|...+..-. ..+.++.||+|+|+.
T Consensus 283 ~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l---------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 283 DPETREFTLEGGALVLADNGVCCIDEFDKM---------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred ccCcceEEecCccEEecCCCEEEEechhhC---------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00000000 0011223679999999987 4555666666553311 123578999999965
Q ss_pred C-------------CCcHHHHccccceEe-cCCCCHHHHHHHHHHHHHhhcCCCC--CCCCccch-hhhhhh----hhhh
Q 006700 499 G-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKYLCSDE--GDSSSLKW-GHLFKK----QQQK 557 (635)
Q Consensus 499 ~-------------~l~~~l~~R~d~~i~-~~~p~~~er~~Il~~~l~~~~~~~~--~~~~~~~~-~~~~~~----~~~~ 557 (635)
. .|++++++|||.++. .+.|+.+....|+.+.+..+....+ .......| ...+.. .+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~ 433 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREK 433 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhc
Confidence 2 589999999997654 4889999999999988765432111 00000001 112221 1111
Q ss_pred hhccCCCHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 558 ITIKDLSDNVIQEAARKT---------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 558 ~~~~~~~~~~l~~la~~t---------------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
+. ..+++++.+.|...+ .+.|+|.+..|+...++.|.......++.+|+..+++-+.
T Consensus 434 ~~-P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 434 IK-PKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 21 237888777765421 2468899999999999999998899999999999987654
No 192
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.38 E-value=3.7e-11 Score=120.07 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=103.4
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCcHHHHccccceE
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------------PGDLDSAITDRIDEVI 513 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~------------~~~l~~~l~~R~d~~i 513 (635)
-|+||||||++.| +-....+||..| +++..+ ++|++||+ |.-++-.|++|+ .+|
T Consensus 288 vpGVLFIDEvHML---------DIEcFsFlNrAl---E~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII 353 (454)
T KOG2680|consen 288 VPGVLFIDEVHML---------DIECFSFLNRAL---ENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LII 353 (454)
T ss_pred ccceEEEeeehhh---------hhHHHHHHHHHh---hhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-hee
Confidence 3568999999876 234445555544 333333 56666664 456899999999 899
Q ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006700 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593 (635)
Q Consensus 514 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a 593 (635)
...+++.++...||+..+..... .+++++++.|......-|-|--..|+.+....
T Consensus 354 ~t~py~~~d~~~IL~iRc~EEdv-------------------------~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~ 408 (454)
T KOG2680|consen 354 STQPYTEEDIKKILRIRCQEEDV-------------------------EMNPDALDLLTKIGEATSLRYAIHLITAASLV 408 (454)
T ss_pred ecccCcHHHHHHHHHhhhhhhcc-------------------------ccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999998876543 37888999999887777777777888877777
Q ss_pred HHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 594 VYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 594 a~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
+..+...++..+|+..+..-|+.+.
T Consensus 409 ~~krk~~~v~~~di~r~y~LFlD~~ 433 (454)
T KOG2680|consen 409 CLKRKGKVVEVDDIERVYRLFLDEK 433 (454)
T ss_pred HHHhcCceeehhHHHHHHHHHhhhh
Confidence 8888889999999999999998754
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.37 E-value=2.2e-11 Score=138.23 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=140.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCccc-chhhH--HHHHH-HHHHH---HhhcCCcEEEEecCchh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP-LGAQA--VTKIH-EIFDW---AKKSKKGLLLFIDEADA 457 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~~-~~~~~--~~~l~-~~f~~---a~~~~~~~vL~iDEid~ 457 (635)
.++|||.|+||||||++|++|+..++. +|+.+..+.... +.+.. ...+. +.+.+ ......++||||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 568999999999999999999998864 587776432211 11110 00000 00000 00112357999999998
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEEEeCCCC---CCcHHHHccccceEecC-CCCHHHH
Q 006700 458 FLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVLATNRPG---DLDSAITDRIDEVIEFP-LPREEER 523 (635)
Q Consensus 458 l~~~r~~~~~~~~~~~~L~~ll~~~~----------~~~~~viiI~ttN~~~---~l~~~l~~R~d~~i~~~-~p~~~er 523 (635)
+ +...+..|..++..-. ..+.++.||+|+|..+ .|.+.+++||+.+|.+. +|+.++|
T Consensus 96 l---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 96 L---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred C---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 7 4556666666554311 1235789999999765 79999999999887775 5677889
Q ss_pred HHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCC-HHHHHHHHHHHHHHHHcCCCC
Q 006700 524 FKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFS-GREIAKLMASVQAAVYARPDC 600 (635)
Q Consensus 524 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~s-grdI~~L~~~~q~aa~~s~~~ 600 (635)
.+|++.++....... ..........+......+.-..++++.+..|+..+ -|.+ .|--..++..+++.+...+..
T Consensus 167 ~eil~~~~~~~~~~~--~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~ 244 (589)
T TIGR02031 167 VEIVRRERCNEVFRM--NDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRT 244 (589)
T ss_pred HHHHHHHHHhhhhhc--chhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 999998874432100 00000001111111222222347888888777654 2444 566667788889989888999
Q ss_pred ccCHHHHHHHHHHHHhhh
Q 006700 601 VLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 601 ~lt~~~i~~~l~~~~~~~ 618 (635)
.++.+|+..++...++-.
T Consensus 245 ~V~~~Dv~~a~~lvl~hR 262 (589)
T TIGR02031 245 EVTEEDLKLAVELVLLPR 262 (589)
T ss_pred CCCHHHHHHHHHHHhhhh
Confidence 999999999999998733
No 194
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.37 E-value=4e-12 Score=141.06 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=145.3
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch--hhH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG--AQA 430 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~--~~~ 430 (635)
.+..+++.......+...+........ ++|++|++||||+++|++++..+ +.+|+.++|..+..-. ...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQA------SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCc------EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHh
Confidence 446688877766666655555444333 49999999999999999998875 4789999998875310 000
Q ss_pred HHHHHHHHHHH-------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEe
Q 006700 431 VTKIHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 495 (635)
Q Consensus 431 ~~~l~~~f~~a-------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~tt 495 (635)
.+.....|..+ .....+++|||||++.+ +...+..|..++.... ....++.||+||
T Consensus 215 fg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t 285 (457)
T PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM---------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAAT 285 (457)
T ss_pred cCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeC
Confidence 00000000000 01223679999999988 4556666666665421 112468999999
Q ss_pred CCC-------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 496 NRP-------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 496 N~~-------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
|.. ..+.+.+..|+ ..+.+..|+..+|.. |+.+|+.++.. .....+..++
T Consensus 286 ~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~------------------~~~~~~~~~~ 346 (457)
T PRK11361 286 NRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSS------------------ENQRDIIDID 346 (457)
T ss_pred CCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHH------------------HcCCCCCCcC
Confidence 854 35778888888 557777777776654 66666665432 1122223589
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++++..|..+ .|+| +++.|-+.++.++..+.+..|+.+++...+
T Consensus 347 ~~a~~~L~~~--~wpg-Nv~eL~~~~~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 347 PMAMSLLTAW--SWPG-NIRELSNVIERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHcC--CCCC-cHHHHHHHHHHHHHhCCCCcccHHHChHhh
Confidence 9999999965 6766 899999999988888877889888876433
No 195
>PRK15115 response regulator GlrR; Provisional
Probab=99.37 E-value=6.3e-12 Score=139.00 Aligned_cols=216 Identities=20% Similarity=0.324 Sum_probs=140.6
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch--hhHHHH
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG--AQAVTK 433 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~--~~~~~~ 433 (635)
.++|.......+...+....... .+++|+|++|||||++|+.++... +.+|+.++|..+.... ....+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~------~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~ 208 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSD------VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH 208 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCC------CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 56776655554444333332221 249999999999999999999886 4789999998864311 111111
Q ss_pred HHHHHHHH-------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC--------CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWA-------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--------QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a-------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~--------~~~~viiI~ttN~~ 498 (635)
..+.|..+ .....+++|||||++.| +...+..|..++..-.. ...++.||+||+..
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 209 ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM---------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CcCCCCCCccCCCCcEEECCCCEEEEEccccC---------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 11111100 01223579999999987 45666677666654221 12368999999853
Q ss_pred -------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 499 -------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 499 -------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
..+.+.+..|+ ..+.+..|+..+|.+ |+.+++..+.. .....+..+++++
T Consensus 280 l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~------------------~~~~~~~~~~~~a 340 (444)
T PRK15115 280 LPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAE------------------RHKPFVRAFSTDA 340 (444)
T ss_pred HHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHH------------------HhCCCCCCcCHHH
Confidence 25667777777 667888888877754 56677665432 1111223489999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+..|..+ .|+| +++.|.+.++.++..+.+..|+.+++...+
T Consensus 341 ~~~L~~~--~Wpg-NvreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMTA--SWPG-NVRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 9999966 6766 999999999988887777788888775433
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.8e-11 Score=129.48 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=97.5
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCe----------------eeccCCCccc---------chhhHHHHHHHHH
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDY----------------AMMTGGDVAP---------LGAQAVTKIHEIF 438 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~----------------~~l~~~~~~~---------~~~~~~~~l~~~f 438 (635)
++.++.+||+||+|+||+++|.++|..+-+.- ..-+.+|+.. ++.+....+...+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 34456799999999999999999999884310 0011122211 2223333333333
Q ss_pred HHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCC
Q 006700 439 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 439 ~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p 518 (635)
......+.+.|+|||++|.|. ...-|.||+.+++++.+++||++|+.++.+.|.++||+ ..+.|++|
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~~~~ 167 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC-RLHYLAPP 167 (334)
T ss_pred hhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-ccccCCCC
Confidence 333334567899999999884 46789999999999999999999999999999999999 68899999
Q ss_pred CHHHHHHHHHH
Q 006700 519 REEERFKLLKL 529 (635)
Q Consensus 519 ~~~er~~Il~~ 529 (635)
+.++....+..
T Consensus 168 ~~~~~~~~L~~ 178 (334)
T PRK07993 168 PEQYALTWLSR 178 (334)
T ss_pred CHHHHHHHHHH
Confidence 99887776653
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=4.2e-11 Score=125.67 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=97.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCee--ec--------------cCCCcc--------cchhhHHHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MM--------------TGGDVA--------PLGAQAVTKIHEIFDW 440 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--~l--------------~~~~~~--------~~~~~~~~~l~~~f~~ 440 (635)
..++.+||+||+|+||+++|+.+|+.+-+.-- .- +.+|+. .++.+....+...+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 34457999999999999999999998843210 00 111111 1222333333333332
Q ss_pred HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCH
Q 006700 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPRE 520 (635)
Q Consensus 441 a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~ 520 (635)
....++..|++||++|.|. ....|.||..+++++.+++||++|+.++.+.|.++||| ..+.|++|+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~ 168 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEE 168 (325)
T ss_pred ccccCCceEEEEechhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCH
Confidence 2334556899999999883 46789999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHH
Q 006700 521 EERFKLLKLY 530 (635)
Q Consensus 521 ~er~~Il~~~ 530 (635)
++....|...
T Consensus 169 ~~~~~~L~~~ 178 (325)
T PRK06871 169 QQALDWLQAQ 178 (325)
T ss_pred HHHHHHHHHH
Confidence 9887776653
No 198
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.35 E-value=9.9e-12 Score=125.79 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=135.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------eeeccCCCcccc
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------YAMMTGGDVAPL 426 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------~~~l~~~~~~~~ 426 (635)
.+..+.+++++.++...+..+.. ....+|+|||||||||||+...+.|..+-.+ +..++.++-.
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~--------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r-- 105 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSG--------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR-- 105 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhcc--------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--
Confidence 34466899999999888877621 2223389999999999999999999988543 2233444422
Q ss_pred hhhHHHHHHHHHHHHhh------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006700 427 GAQAVTKIHEIFDWAKK------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 500 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~ 500 (635)
|.+....-...|..... .....+++|||+|++. .+.+..|. ...+....++.|+..+|++..
T Consensus 106 gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT---------~~AQnALR---Rviek~t~n~rF~ii~n~~~k 173 (360)
T KOG0990|consen 106 GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT---------RDAQNALR---RVIEKYTANTRFATISNPPQK 173 (360)
T ss_pred CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh---------HHHHHHHH---HHHHHhccceEEEEeccChhh
Confidence 22333333444444432 1246789999999883 34444444 456677888999999999999
Q ss_pred CcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 501 LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 501 l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+.|++.+|| ..+.|.+.+.......+.+.++.... ..+++....++..+-|
T Consensus 174 i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~-------------------------~~~~~~~~a~~r~s~g--- 224 (360)
T KOG0990|consen 174 IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK-------------------------ETNPEGYSALGRLSVG--- 224 (360)
T ss_pred cCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh-------------------------hcCHHHHHHHHHHhHH---
Confidence 999999999 88899888888888888887764332 2566666667766555
Q ss_pred HHHHHHHHHHHHHHHc
Q 006700 581 REIAKLMASVQAAVYA 596 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~ 596 (635)
|++..++.++..+..
T Consensus 225 -Dmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 225 -DMRVALNYLQSILKK 239 (360)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 999999888876543
No 199
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.35 E-value=1.2e-11 Score=137.63 Aligned_cols=219 Identities=17% Similarity=0.225 Sum_probs=146.0
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hhhHH
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQAV 431 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~~~~ 431 (635)
+..++|.......+...+........ ++++.|.+||||+++|++++... +.+|+.++|..+..- .....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~------~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDI------TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCC------eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhc
Confidence 35688888777777666555443332 49999999999999999999886 468999999886431 11110
Q ss_pred HHHHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeC
Q 006700 432 TKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATN 496 (635)
Q Consensus 432 ~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN 496 (635)
+.....|..+. ....+++|||||++.+ +...+..|..++.... ....++.||+||+
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l---------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM---------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC---------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 10001111000 1223678999999987 4566666666665421 1123678999987
Q ss_pred CC-------CCCcHHHHcccc-ceEecCCCC--HHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHH
Q 006700 497 RP-------GDLDSAITDRID-EVIEFPLPR--EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 566 (635)
Q Consensus 497 ~~-------~~l~~~l~~R~d-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (635)
.. ..+.+.+..|+. ..|++|++. .+++..|+.+|+..+.. ..+..+..++++
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~~~ 339 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR------------------ELDVEPKLLDPE 339 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH------------------HhCCCCCCcCHH
Confidence 53 367788888884 245555554 35566678888776543 112222358999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 567 VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 567 ~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++..|..+ +|+| +++.|-+.++.++..+.+..|+.+++...+
T Consensus 340 a~~~L~~~--~wpg-NvreL~~~~~~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 340 ALERLKQL--RWPG-NVRQLENLCRWLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHhC--CCCC-hHHHHHHHHHHHHHhCCCCcccHHhchHHH
Confidence 99999966 8877 999999999998888777889998886554
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.1e-11 Score=126.44 Aligned_cols=132 Identities=28% Similarity=0.319 Sum_probs=96.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCee-------------eccCCCcccc-------h-----hhHHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYA-------------MMTGGDVAPL-------G-----AQAVTKIHEIFD 439 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-------------~l~~~~~~~~-------~-----~~~~~~l~~~f~ 439 (635)
..++.+||+||+|+||+++|..+|+.+-+.-. .-+..|+..+ + .-....++++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 33456999999999999999999998743210 0011121111 0 012344555554
Q ss_pred HHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecC
Q 006700 440 WAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFP 516 (635)
Q Consensus 440 ~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~ 516 (635)
.+.. .+.+.|++||++|.|. ....|.||+.+++++.+++||++|+.++.+.|.|+||| ..+.|+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~ 170 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFK 170 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCC
Confidence 4432 2346899999999883 45788999999999999999999999999999999999 899999
Q ss_pred CCCHHHHHHHHHH
Q 006700 517 LPREEERFKLLKL 529 (635)
Q Consensus 517 ~p~~~er~~Il~~ 529 (635)
+|+.++....+..
T Consensus 171 ~~~~~~~~~~L~~ 183 (319)
T PRK08769 171 LPPAHEALAWLLA 183 (319)
T ss_pred CcCHHHHHHHHHH
Confidence 9999877766653
No 201
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.2e-11 Score=122.93 Aligned_cols=225 Identities=15% Similarity=0.262 Sum_probs=137.1
Q ss_pred CccccChHHHHHHHHHHH----HHhcc-cccC--CCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---ch
Q 006700 358 GDIILHPSLQRRIQHLAK----ATANT-KIHQ--APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~----~~~~~-~~~~--~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~ 427 (635)
+-||||+..++.|.-.+. .+.+. .... -.-.|+||.||+|||||+||+.||+.++.||..-++..+.. +|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 347889988887643221 11111 1110 11247999999999999999999999999999998877753 44
Q ss_pred hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccC-----cHHHHHHHHHHHHHhCC---------------
Q 006700 428 AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHM-----SEAQRSALNALLFRTGD--------------- 484 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~-----~~~~~~~L~~ll~~~~~--------------- 484 (635)
.+-+..+..++..+. .....+|++|||||.+.++..+.+. .+..++.|..++..+-.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 444444555554432 1223479999999999887654322 34556666666544310
Q ss_pred ---CCCCEEEEEEeCCC---------------------------------------C-----CCcHHHHccccceEecCC
Q 006700 485 ---QSRDIVLVLATNRP---------------------------------------G-----DLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 485 ---~~~~viiI~ttN~~---------------------------------------~-----~l~~~l~~R~d~~i~~~~ 517 (635)
+..|++||+..-.. + -|-|+|..|++.+..+..
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 23455555532110 0 144899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Q 006700 518 PREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMASVQAAV 594 (635)
Q Consensus 518 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~~~q~aa 594 (635)
.+.+...+||..= .+.....+..+|.-..-.+. ++++++..||+.. .+--.|-|+.++..+..-+
T Consensus 301 Lde~aLv~ILteP---------kNAlvKQYq~Lf~~d~V~L~---F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~ 367 (408)
T COG1219 301 LDEDALVQILTEP---------KNALVKQYQKLFEMDGVELE---FTEEALKAIAKKAIERKTGARGLRSIIEELLLDV 367 (408)
T ss_pred cCHHHHHHHHhcc---------cHHHHHHHHHHhcccCceEE---EcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 9999988876521 11111112223332222232 8899999999653 2334566888876554443
No 202
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=114.00 Aligned_cols=164 Identities=18% Similarity=0.311 Sum_probs=122.6
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhh
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ 429 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~ 429 (635)
+...+.+++|-+..++.|.+-...+.. +.|-+|+||+|..||||+++++++..++ |..++.++-.++.
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~----G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~----- 125 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE----GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA----- 125 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc----CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-----
Confidence 345778999999999998654444433 4566789999999999999999998887 4556666554443
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH-hCCCCCCEEEEEEeCCCCCCc------
Q 006700 430 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-TGDQSRDIVLVLATNRPGDLD------ 502 (635)
Q Consensus 430 ~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~-~~~~~~~viiI~ttN~~~~l~------ 502 (635)
.+-.+++..+......|||+|++- ..........|..+|.. +...+.||+|.+|||+...++
T Consensus 126 ---~Lp~l~~~Lr~~~~kFIlFcDDLS--------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn 194 (287)
T COG2607 126 ---TLPDLVELLRARPEKFILFCDDLS--------FEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDN 194 (287)
T ss_pred ---hHHHHHHHHhcCCceEEEEecCCC--------CCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhC
Confidence 445566666777778999999983 11123445566666654 356788999999999765443
Q ss_pred ----------------HHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 503 ----------------SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 503 ----------------~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
-.+-+||...+.|++++.++-..|+.+|++.+.+
T Consensus 195 ~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 195 EGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred CCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC
Confidence 1233599999999999999999999999988876
No 203
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.32 E-value=1.2e-10 Score=132.42 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=92.6
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------------------CCCCCEEEEEEeCCC--CCCcHHHH
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------------------DQSRDIVLVLATNRP--GDLDSAIT 506 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------------------~~~~~viiI~ttN~~--~~l~~~l~ 506 (635)
+++|||||++.| +...+..|..+|+.-. ..+.++.+|+++|.. ..+++.|+
T Consensus 218 gGtL~Ldei~~L---------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 218 KGVLYIDEIKTM---------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred CCEEEEEChHhC---------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 468899999877 3455666666664421 113478899999964 57999999
Q ss_pred cccc---ceEecCC--C-CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC----
Q 006700 507 DRID---EVIEFPL--P-REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE---- 576 (635)
Q Consensus 507 ~R~d---~~i~~~~--p-~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~---- 576 (635)
+||+ ..+.|+. | +.+.+..+++.+...... . + .+ ..++++++..|.+...
T Consensus 289 ~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r-~-G----------------~l--~~~s~~Av~~Li~~~~R~ag 348 (608)
T TIGR00764 289 SRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKK-D-G----------------RI--PHFTRDAVEEIVREAQRRAG 348 (608)
T ss_pred HHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHH-h-C----------------CC--CcCCHHHHHHHHHHHHHHHh
Confidence 9998 6666643 3 455555555543332221 0 0 01 1378888777764321
Q ss_pred -----CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 577 -----GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 577 -----G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
..+.|+|..++..+...+...+...|+.+|+.++++....
T Consensus 349 ~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 349 RKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 1356899999987766666666789999999999887754
No 204
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=99.32 E-value=6.4e-10 Score=111.61 Aligned_cols=153 Identities=13% Similarity=0.132 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCchhhhHHH--HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006700 62 EPEEPRGSGFDPEALERAA--KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNL 139 (635)
Q Consensus 62 ~~~~~~~~~fd~~~ler~a--~~~~~l~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~ 139 (635)
+.+.++.++....+|++.+ +|++.|+....+++| .+.+|..+++|.+ +..|+.+..++++....+.+.|..|..
T Consensus 15 ~~~~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~A---k~afel~k~QE~T-kQ~E~~ak~~e~ea~~~q~~~e~~rv~ 90 (276)
T PF12037_consen 15 SKPRNDNPRTTASGFDPEALERAAKALRELNSSPHA---KKAFELMKKQEET-KQAELQAKIAEYEAAQAQAEIERQRVE 90 (276)
T ss_pred cCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcChhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999 999999999999999 9999999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHhcchhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006700 140 VQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVK--MQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETI 217 (635)
Q Consensus 140 ~~~~~~~~~~~~~~~d~l~r~~~q~e~e~~~~~~e~~~~--~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~ 217 (635)
.+++.+.-++..+.+.+.+ .|+++|++++.+.+...+ .+++....||+ .-.+.+.+++.++++...+++.+.
T Consensus 91 ~EE~Rkt~~~q~q~~~q~a--qY~D~LaRkR~~~e~~~qr~~n~e~lk~QEe----s~~rqE~~Rr~Te~~i~~~r~~t~ 164 (276)
T PF12037_consen 91 AEERRKTLQQQTQQKQQRA--QYEDELARKRYQDELEQQRRRNEELLKMQEE----SVIRQEQMRRATEEQILAQRRQTE 164 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999988888777766655 899999998887654322 23333333332 344778888999888888777666
Q ss_pred HHHHHHH
Q 006700 218 RVKAMAE 224 (635)
Q Consensus 218 ~~k~~~E 224 (635)
..+.+-+
T Consensus 165 ~~eaeL~ 171 (276)
T PF12037_consen 165 EEEAELR 171 (276)
T ss_pred HHHHHHH
Confidence 5544433
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.3e-11 Score=128.49 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=98.3
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCee---eccC--------------CCcccch-------------------
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA---MMTG--------------GDVAPLG------------------- 427 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~---~l~~--------------~~~~~~~------------------- 427 (635)
+..++.+||+||+|+||+++|+.+|+.+.+..- ...| .|+..+.
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 345568999999999999999999998854321 0011 1110000
Q ss_pred -------------hhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 006700 428 -------------AQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 491 (635)
Q Consensus 428 -------------~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vii 491 (635)
.-....++.+..... ...++.|++||++|.|. ....|.||..+++++.+++|
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPGTVF 165 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcCcEE
Confidence 012234444444432 23456799999999884 46789999999999999999
Q ss_pred EEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHH
Q 006700 492 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKL 529 (635)
Q Consensus 492 I~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~ 529 (635)
|++|+.++.+.|.++||| ..+.|++|+.++....+..
T Consensus 166 iL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 999999999999999999 8999999999988887765
No 206
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.30 E-value=1.6e-12 Score=126.42 Aligned_cols=144 Identities=28% Similarity=0.377 Sum_probs=63.8
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC----------CeeeccCCC---
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----------DYAMMTGGD--- 422 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~----------~~~~l~~~~--- 422 (635)
+|.+|+||+.++.++.-.+. + .+|+||+||||||||++|+.+...+.- .++.+.+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------G--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~ 70 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------G--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDE 70 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------C--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------C--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCC
Confidence 47999999999999975443 1 247999999999999999999987621 111111100
Q ss_pred -c---ccch-hhHHHHHHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC------
Q 006700 423 -V---APLG-AQAVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD------ 484 (635)
Q Consensus 423 -~---~~~~-~~~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~------ 484 (635)
+ .++. .........++.... .....+||||||+..| + ..+++.|++-+++
T Consensus 71 ~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef---------~---~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 71 GLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF---------D---RSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------------HHHHHHHHHHHHHSBEEEE
T ss_pred ceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc---------C---HHHHHHHHHHHHCCeEEEE
Confidence 0 0000 000000011111000 1223579999999866 2 3455555554432
Q ss_pred -------CCCCEEEEEEeCCC-----------------------CCCcHHHHccccceEecCCCCHH
Q 006700 485 -------QSRDIVLVLATNRP-----------------------GDLDSAITDRIDEVIEFPLPREE 521 (635)
Q Consensus 485 -------~~~~viiI~ttN~~-----------------------~~l~~~l~~R~d~~i~~~~p~~~ 521 (635)
.+.+|++|+|+|.- ..+.-.+++|||..|.++..+.+
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred ECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 45689999999952 14667888999999998887655
No 207
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.30 E-value=7.3e-11 Score=130.85 Aligned_cols=228 Identities=22% Similarity=0.283 Sum_probs=134.3
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC---------------------
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--------------------- 413 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~--------------------- 413 (635)
.+|.+|+|+..+++.+...+. ...+++|+||||||||++++.++..+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 378999999999777654321 2246999999999999999999875411
Q ss_pred -------CeeeccCCCccc--chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-
Q 006700 414 -------DYAMMTGGDVAP--LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG- 483 (635)
Q Consensus 414 -------~~~~l~~~~~~~--~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~- 483 (635)
||....++.... +++... .--+.+. ...++||||||++.| +...+..|...|..-.
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~-~~pG~i~----lA~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPI-PLPGEIS----LAHNGVLFLDELPEF---------KRSVLDALREPIEDGSI 324 (499)
T ss_pred ccccccCCccccccccchhhhhCCccc-cchhhhh----ccCCCeEecCChhhC---------CHHHHHHHHHHHHcCcE
Confidence 111111110000 111000 0011222 223689999999987 4555666666553311
Q ss_pred ---------CCCCCEEEEEEeCCC------C-----------------CCcHHHHccccceEecCCCCHHHH--------
Q 006700 484 ---------DQSRDIVLVLATNRP------G-----------------DLDSAITDRIDEVIEFPLPREEER-------- 523 (635)
Q Consensus 484 ---------~~~~~viiI~ttN~~------~-----------------~l~~~l~~R~d~~i~~~~p~~~er-------- 523 (635)
..+.++.+|+++|.. + .+...|++|||.++.++.++..+.
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~ 404 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGES 404 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCC
Confidence 124579999999953 1 478899999999999998876543
Q ss_pred -----HHHHHHHH---HhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHH---HHHHcCCCCHHHHHHHHHHHHH
Q 006700 524 -----FKLLKLYL---KKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE---AARKTEGFSGREIAKLMASVQA 592 (635)
Q Consensus 524 -----~~Il~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---la~~t~G~sgrdI~~L~~~~q~ 592 (635)
.++....- .++.. ...-..+.. +-...-.+ ...++++.... .... .++|.|-+.+++..++.
T Consensus 405 s~~ir~rV~~Ar~~q~~R~~~-~~~~~~N~~---l~~~~l~~--~~~l~~~~~~~l~~a~~~-~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 405 SAEVKQRVIKAREIQNIRYEK-FANINKNAD---LNSDEIEQ--FCKLSAIDANDLEGALNK-LGLSSRATHRILKVART 477 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCccccc---CCHHHHHh--hcCCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHH
Confidence 11221111 11100 000000000 00000000 11245544333 3333 37899999999999999
Q ss_pred HHHcCCCCccCHHHHHHHHHH
Q 006700 593 AVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 593 aa~~s~~~~lt~~~i~~~l~~ 613 (635)
.|--.+...|+.+|+.+++.+
T Consensus 478 iAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHhc
Confidence 998888899999999999875
No 208
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=7e-11 Score=123.68 Aligned_cols=133 Identities=18% Similarity=0.162 Sum_probs=97.1
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCee---------------eccCCCcc---------cchhhHHHHHHHHHH
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA---------------MMTGGDVA---------PLGAQAVTKIHEIFD 439 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~---------------~l~~~~~~---------~~~~~~~~~l~~~f~ 439 (635)
++.++.+||+||.|+||+++|+.+|+.+-+.-. .-+.+|+. .++.+....+...+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 444567999999999999999999998733110 00111221 122233333333332
Q ss_pred HHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCC
Q 006700 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 440 ~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
.....+.+.|++||++|.|. ...-|.||+.+++++.+++||++|+.++.+.|.++||| ..+.|++|+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~ 168 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPS 168 (319)
T ss_pred hCcccCCceEEEecchhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCC
Confidence 22233456899999999883 46789999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHH
Q 006700 520 EEERFKLLKL 529 (635)
Q Consensus 520 ~~er~~Il~~ 529 (635)
.++..+.+..
T Consensus 169 ~~~~~~~L~~ 178 (319)
T PRK06090 169 TAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHH
Confidence 9988776653
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.28 E-value=1.5e-11 Score=117.64 Aligned_cols=131 Identities=21% Similarity=0.336 Sum_probs=88.2
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hhhHHH--
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQAVT-- 432 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~~~~~-- 432 (635)
+||.+...+.+.+.+........ +|||+|++||||+++|++|+..+ +.||+.++|+.+..- .....+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~------pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDL------PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-------EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCC------CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc
Confidence 57888888888887777665543 49999999999999999999987 468999999987531 111111
Q ss_pred ---------HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEEe
Q 006700 433 ---------KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLAT 495 (635)
Q Consensus 433 ---------~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----~---~~~~viiI~tt 495 (635)
.-.++|..|. +++||||||+.| +...+..|..+|+.-. . ...++.||+||
T Consensus 75 ~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 75 KGAFTGARSDKKGLLEQAN----GGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp SSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred cccccccccccCCceeecc----ceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 0124554443 789999999988 5677888888887521 1 23489999999
Q ss_pred CCC-------CCCcHHHHccc
Q 006700 496 NRP-------GDLDSAITDRI 509 (635)
Q Consensus 496 N~~-------~~l~~~l~~R~ 509 (635)
+.+ ..+.+.|..|+
T Consensus 142 ~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 142 SKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp SS-HHHHHHTTSS-HHHHHHH
T ss_pred CcCHHHHHHcCCChHHHHHHh
Confidence 964 46677777776
No 210
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.8e-11 Score=129.24 Aligned_cols=234 Identities=20% Similarity=0.260 Sum_probs=132.7
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC----------CeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----------DYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~----------~~~~l~~~~~ 423 (635)
..+|.||+||+..++.+.-.+. ..+|+||+||||||||++|+.+...+-- -+..+.+...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA----------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA----------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh----------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 4489999999999999975433 2347999999999999999998766510 0011111000
Q ss_pred c--------cch-hhHHHHHHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC---
Q 006700 424 A--------PLG-AQAVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--- 484 (635)
Q Consensus 424 ~--------~~~-~~~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~--- 484 (635)
. ++- .........++..-. ....++||||||+-.| -+.+|+.|.+-+++
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef------------~~~iLe~LR~PLE~g~i 312 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEF------------KRSILEALREPLENGKI 312 (490)
T ss_pred ccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchh------------hHHHHHHHhCccccCcE
Confidence 0 000 000000000000000 1123579999999654 35788888776653
Q ss_pred ----------CCCCEEEEEEeCCCC-----------------------CCcHHHHccccceEecCCCCHHHHH-------
Q 006700 485 ----------QSRDIVLVLATNRPG-----------------------DLDSAITDRIDEVIEFPLPREEERF------- 524 (635)
Q Consensus 485 ----------~~~~viiI~ttN~~~-----------------------~l~~~l~~R~d~~i~~~~p~~~er~------- 524 (635)
++.+|.+|+++|..- .+.-.|++|||..+.++.++..++.
T Consensus 313 ~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~e 392 (490)
T COG0606 313 IISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGE 392 (490)
T ss_pred EEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCC
Confidence 345788999999531 3557888999999999998744332
Q ss_pred -------HHHHHHHHhhcCCCCCCCCccchhhhhhhh-hhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q 006700 525 -------KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ-QQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 596 (635)
Q Consensus 525 -------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~ 596 (635)
+++..+-..+....... .+.. +.... ...+.+...+.+.+..... .-++|.|....++......+--
T Consensus 393 ss~~v~~rVa~AR~~Q~~R~~~~~-~Na~---l~~~~l~k~~~L~~~~~~~L~~al~-~~~lS~R~~~rILKvarTiADL 467 (490)
T COG0606 393 SSAGVRERVAKAREAQIARAGRIG-INAE---LSEEALRKFCALQREDADLLKAALE-RLGLSARAYHRILKVARTIADL 467 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccC-cchh---cCHHHHHHhcccCHhHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhcc
Confidence 12222211111000000 0000 00000 1112211111222333333 3488999999999888877777
Q ss_pred CCCCccCHHHHHHHHHHH
Q 006700 597 RPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 597 s~~~~lt~~~i~~~l~~~ 614 (635)
.+...|...++.+++.+.
T Consensus 468 ~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 468 EGSEQIERSHLAEAISYR 485 (490)
T ss_pred cCcchhhHHHHHHHHhhh
Confidence 777889999999998875
No 211
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.2e-11 Score=123.92 Aligned_cols=190 Identities=21% Similarity=0.358 Sum_probs=125.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r 462 (635)
||||.||+|+|||+||+.||+.++.||+..+|..+.. +|.+-...+.+++..|.. ...-+|+||||+|.+....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 6999999999999999999999999999999988753 555555666777665431 1224699999999998544
Q ss_pred ccccC-----cHHHHHHHHHHHHHhC----C--------------CCCCEEEEEEeCCCC--------------------
Q 006700 463 NSIHM-----SEAQRSALNALLFRTG----D--------------QSRDIVLVLATNRPG-------------------- 499 (635)
Q Consensus 463 ~~~~~-----~~~~~~~L~~ll~~~~----~--------------~~~~viiI~ttN~~~-------------------- 499 (635)
.+.+. .+..++.|..++..+- . +..+++||+..-..+
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred ccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 33221 2556666666665421 0 223555555321100
Q ss_pred ------------------------------------CCcHHHHccccceEecCCCCHHHHHHHHHH----HHHhhcCCCC
Q 006700 500 ------------------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKL----YLKKYLCSDE 539 (635)
Q Consensus 500 ------------------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~----~l~~~~~~~~ 539 (635)
-+-|+|..||+.++.|..++.+++.++|.. .+.+|..
T Consensus 388 ~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~--- 464 (564)
T KOG0745|consen 388 SKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKK--- 464 (564)
T ss_pred CccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHH---
Confidence 034899999999999999999998887652 2222221
Q ss_pred CCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Q 006700 540 GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMASVQAAV 594 (635)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~~~q~aa 594 (635)
+|.-..-.+. +++.++..||... .+--.|-|+.++..+-.-+
T Consensus 465 ----------lf~~~nV~L~---fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 465 ----------LFGMDNVELH---FTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred ----------HhccCCeeEE---ecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 2222222232 8999999999653 3444567888886554433
No 212
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.26 E-value=1.5e-10 Score=127.70 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=158.7
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcccc-
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPL- 426 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~~~- 426 (635)
+.+-.-+.-...|..++..+...+. ....|++.|-||||||.+++.+...| ..+|+.+||-.+...
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQG---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCC---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHH
Confidence 3344555666666666665554422 12369999999999999999998876 357888888776541
Q ss_pred ----------hh------hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 006700 427 ----------GA------QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 490 (635)
Q Consensus 427 ----------~~------~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vi 490 (635)
.+ .....+..-|......++++||+|||.|.|.. ..+.+|..|+.+......+++
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------r~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT---------RSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---------ccHHHHHHHhcCCcCCCCceE
Confidence 11 12223344444333455679999999999964 347789999988877778899
Q ss_pred EEEEeCCCCC----CcHHHHcccc-ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 491 LVLATNRPGD----LDSAITDRID-EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 491 iI~ttN~~~~----l~~~l~~R~d-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
||+.+|..+. |...+-+|++ ..+.|.+++..++.+|+...|..... +..
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~--------------------------f~~ 597 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA--------------------------FEN 597 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh--------------------------cch
Confidence 9998886543 2334445766 57899999999999999998876533 677
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCC----------CccCHHHHHHHHHHHHhhhh
Q 006700 566 NVIQEAARKTEGFSGREIAKLMASVQAAVYARPD----------CVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 566 ~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~----------~~lt~~~i~~~l~~~~~~~~ 619 (635)
.+++.+|++....|| |.++.++.+.+++-.+.. ..++.-++..+++.++.++.
T Consensus 598 ~aielvarkVAavSG-DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 598 KAIELVARKVAAVSG-DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred hHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 888888888777777 888888777776544322 35789999999999887654
No 213
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.25 E-value=3.2e-12 Score=118.21 Aligned_cols=111 Identities=26% Similarity=0.395 Sum_probs=69.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chhhHHHHHHHHHHHH-----hhcCCcEEEEecCchhhhh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQAVTKIHEIFDWA-----KKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~~~~~~l~~~f~~a-----~~~~~~~vL~iDEid~l~~ 460 (635)
+|||+||||||||++++.+|+.++.++..++++.... +.+...-. ...+.+. .....++||||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECCcccC--
Confidence 4899999999999999999999999999888776432 11000000 0001000 00114789999999975
Q ss_pred hcccccCcHHHHHHHHHHHHHhC----C------CCC------CEEEEEEeCCCC----CCcHHHHccc
Q 006700 461 ERNSIHMSEAQRSALNALLFRTG----D------QSR------DIVLVLATNRPG----DLDSAITDRI 509 (635)
Q Consensus 461 ~r~~~~~~~~~~~~L~~ll~~~~----~------~~~------~viiI~ttN~~~----~l~~~l~~R~ 509 (635)
+......|+.++..-. . ... ++.||+|+|..+ .+++++++||
T Consensus 78 -------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 -------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2344445555553311 0 111 499999999888 8999999998
No 214
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.3e-10 Score=115.27 Aligned_cols=152 Identities=21% Similarity=0.353 Sum_probs=91.7
Q ss_pred EEEEecCchhhhhhccccc--Cc-HHHHHHHHHHHHHhC-------CCCCCEEEEEEe----CCCCCCcHHHHccccceE
Q 006700 448 LLLFIDEADAFLCERNSIH--MS-EAQRSALNALLFRTG-------DQSRDIVLVLAT----NRPGDLDSAITDRIDEVI 513 (635)
Q Consensus 448 ~vL~iDEid~l~~~r~~~~--~~-~~~~~~L~~ll~~~~-------~~~~~viiI~tt----N~~~~l~~~l~~R~d~~i 513 (635)
+|+||||||.+..+.+.++ .| +..+.-|..++.... -...+++||++. ..|.+|-|.+..||+..|
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRV 331 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 331 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEE
Confidence 4899999999987654322 11 223333333332211 123456777754 368899999999999999
Q ss_pred ecCCCCHHHHHHHHHH----HHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCCHHH
Q 006700 514 EFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT-------EGFSGRE 582 (635)
Q Consensus 514 ~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~G~sgrd 582 (635)
++..++.++..+||.. .+++|. .+++.-. +.+ .|++++++.||..+ +..-.|-
T Consensus 332 EL~~Lt~~Df~rILtep~~sLikQY~-------------aLlkTE~--v~l-~FtddaI~~iAeiA~~vN~~~ENIGARR 395 (444)
T COG1220 332 ELDALTKEDFERILTEPKASLIKQYK-------------ALLKTEG--VEL-EFTDDAIKRIAEIAYQVNEKTENIGARR 395 (444)
T ss_pred EcccCCHHHHHHHHcCcchHHHHHHH-------------HHHhhcC--eeE-EecHHHHHHHHHHHHHhcccccchhHHH
Confidence 9999999999887752 222322 2333222 222 28999999998763 3444455
Q ss_pred HHHHHH-HHHHHHHcCCC-----CccCHHHHHHHHHHHH
Q 006700 583 IAKLMA-SVQAAVYARPD-----CVLDSQLFREVVEYKV 615 (635)
Q Consensus 583 I~~L~~-~~q~aa~~s~~-----~~lt~~~i~~~l~~~~ 615 (635)
|-.++. .+....|...+ -.||.+-+.+-+...+
T Consensus 396 LhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~ 434 (444)
T COG1220 396 LHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLV 434 (444)
T ss_pred HHHHHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHh
Confidence 555553 23333343322 3577777777665544
No 215
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.22 E-value=6.1e-11 Score=130.99 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=138.1
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc--hhhHHHH
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL--GAQAVTK 433 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~--~~~~~~~ 433 (635)
.++|.......+...+..+... ...++|+|.+||||+++|++++..+ +.+|+.++|+.+... .....+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 4667666555554444333222 2359999999999999999999876 468999999876431 1000000
Q ss_pred HHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----~---~~~~viiI~ttN~~ 498 (635)
....|..+. ....+++||||||+.| +...+..|..++..-. . ...++.+|+||+..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDI---------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCCcCCCCcCCCCceeECCCCEEEEeccccC---------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC
Confidence 000010000 1223689999999988 4556666655554321 0 12367889888753
Q ss_pred -------CCCcHHHHccccceEecCCCCHHHHHH----HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHH
Q 006700 499 -------GDLDSAITDRIDEVIEFPLPREEERFK----LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNV 567 (635)
Q Consensus 499 -------~~l~~~l~~R~d~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (635)
..+.+.+..|+ ..+.+..|+..+|.. ++.+|+.++.. .....+..+++++
T Consensus 285 ~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~~~a 345 (441)
T PRK10365 285 LAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAE------------------RNRKAVKGFTPQA 345 (441)
T ss_pred HHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHHHHHH------------------HhCCCCCCcCHHH
Confidence 35677777787 567777777766544 67777766432 1111223489999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 568 IQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 568 l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
+..|..+ .|+| +++.|.+.++.++..+.+..|+.+++...+
T Consensus 346 ~~~L~~~--~wpg-N~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 346 MDLLIHY--DWPG-NIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHhC--CCCC-HHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 9999965 6766 999999999998887777788888775433
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.6e-10 Score=131.36 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=123.1
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc-
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA- 424 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~- 424 (635)
.++-|||-++-.+++-+++.. +..+|-+|.|+||+|||.++.-||... +..++.++.+.+.
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 457799977766666555431 112357899999999999999999886 3445555555543
Q ss_pred --cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---
Q 006700 425 --PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 499 (635)
Q Consensus 425 --~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--- 499 (635)
.+-|+.+..+..+++...... +.||||||++.+.+.....+.+-+..+.|...| ..+.+.+|++|...+
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARGeL~~IGATT~~EYRk 313 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARGELRCIGATTLDEYRK 313 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcCCeEEEEeccHHHHHH
Confidence 266788889999999998877 899999999999876554331233344555555 356688998887433
Q ss_pred --CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 500 --DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 500 --~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
.-|+++-+|| ..|.+.-|+.++-..||+-.-.+|..
T Consensus 314 ~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 314 YIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred HhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 4589999999 89999999999999999988777765
No 217
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=4.2e-10 Score=124.34 Aligned_cols=232 Identities=22% Similarity=0.233 Sum_probs=134.6
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC----------CeeeccCC---
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL----------DYAMMTGG--- 421 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~----------~~~~l~~~--- 421 (635)
.+|.+++|+..+++.+...+ ....+++|+||||||||++++.|+..+.- .++.+.|.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 47888899887776654221 12347999999999999999999876521 11111111
Q ss_pred -------Ccc-c---------chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-
Q 006700 422 -------DVA-P---------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG- 483 (635)
Q Consensus 422 -------~~~-~---------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~- 483 (635)
.+. + +|+.. ..--+.+.. ..+++|||||++.+ +...+..|...+..-.
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~-~~~pG~l~~----A~gGvLfLDEi~e~---------~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGA-IPGPGEISL----AHNGVLFLDELPEF---------ERRTLDALREPIESGQI 323 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCc-eehhhHhhh----ccCCEEecCCchhC---------CHHHHHHHHHHHHcCcE
Confidence 010 0 11110 011123322 23689999999876 3445555555542211
Q ss_pred ---------CCCCCEEEEEEeCCCC---------------------CCcHHHHccccceEecCCCCHHHHHH--------
Q 006700 484 ---------DQSRDIVLVLATNRPG---------------------DLDSAITDRIDEVIEFPLPREEERFK-------- 525 (635)
Q Consensus 484 ---------~~~~~viiI~ttN~~~---------------------~l~~~l~~R~d~~i~~~~p~~~er~~-------- 525 (635)
..+.++.+|+|+|... .++..+++|||..+.+++|+.++...
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess 403 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESS 403 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCCh
Confidence 1356799999999642 47779999999999999986542211
Q ss_pred --HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 006700 526 --LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA--RKTEGFSGREIAKLMASVQAAVYARPDCV 601 (635)
Q Consensus 526 --Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la--~~t~G~sgrdI~~L~~~~q~aa~~s~~~~ 601 (635)
|.+....-........ . .+...+.. ..-.....++++....+. ....|+|.|....++..+++.|.-.+...
T Consensus 404 ~~i~~rV~~ar~~q~~r~-~--~~n~~l~~-~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~ 479 (506)
T PRK09862 404 ATVKQRVMAARERQFKRQ-N--KLNAWLDS-PEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDI 479 (506)
T ss_pred HHHHHHHhhHHHHHHHHH-H--HHhcccCH-HHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 1111110000000000 0 00000000 000011124555544332 23348999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 006700 602 LDSQLFREVVEYK 614 (635)
Q Consensus 602 lt~~~i~~~l~~~ 614 (635)
|+.+|+.+++.+.
T Consensus 480 V~~~hv~eAl~yR 492 (506)
T PRK09862 480 ITRQHLQEAVSYR 492 (506)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999986
No 218
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.5e-10 Score=124.69 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=157.5
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc-cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~-~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
..++.+++++||||||||++++.++.. +..+..+++..+. .+.+.....+...|.++....+ +++++|+++.+.+.+
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~ii~~d~~~~~~~~~ 92 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAP-SIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCC-CeEeechhhhcccCc
Confidence 467789999999999999999999999 6656556666554 4677888899999999988774 899999999999888
Q ss_pred ccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEEeCCCCCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCC
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDE 539 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~-~~~viiI~ttN~~~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 539 (635)
.. ........++..++..++.. ...++++..+|.+..+++.+.. ||+..+.++.|+...+..|+.........
T Consensus 93 ~~-~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~--- 168 (494)
T COG0464 93 SS-DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFL--- 168 (494)
T ss_pred cc-cccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCC---
Confidence 77 33334445555555554321 2337777799999999999887 99999999999999898888877655443
Q ss_pred CCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHc-----CCCCccCHHHHHHHHHH
Q 006700 540 GDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQ-AAVYA-----RPDCVLDSQLFREVVEY 613 (635)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q-~aa~~-----s~~~~lt~~~i~~~l~~ 613 (635)
..+..+..++..+.||++.++..++.... ..+.. .....++.+++...++.
T Consensus 169 -----------------------~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~ 225 (494)
T COG0464 169 -----------------------GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKK 225 (494)
T ss_pred -----------------------cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHh
Confidence 22456888999999999999999995433 33332 23456889999999999
Q ss_pred HHhh
Q 006700 614 KVEE 617 (635)
Q Consensus 614 ~~~~ 617 (635)
..+.
T Consensus 226 ~~~~ 229 (494)
T COG0464 226 VLPS 229 (494)
T ss_pred cCcc
Confidence 8764
No 219
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.16 E-value=1.9e-09 Score=113.82 Aligned_cols=247 Identities=17% Similarity=0.194 Sum_probs=147.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec----cCCCccc----
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM----TGGDVAP---- 425 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l----~~~~~~~---- 425 (635)
...|.-++|++.++..|.-- . . .+...++||-|+.||||||++++|+..|.---... +|....+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~--a-v-----~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c 84 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN--A-V-----DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMC 84 (423)
T ss_pred ccchhhhcCchHHHHHHhhh--h-c-----ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhh
Confidence 34678899999999988532 1 1 23345799999999999999999999883111111 1111000
Q ss_pred --------------------------chhhHHHH------HHHHHHH-H-------hhcCCcEEEEecCchhhhhhcccc
Q 006700 426 --------------------------LGAQAVTK------IHEIFDW-A-------KKSKKGLLLFIDEADAFLCERNSI 465 (635)
Q Consensus 426 --------------------------~~~~~~~~------l~~~f~~-a-------~~~~~~~vL~iDEid~l~~~r~~~ 465 (635)
++ .+... +...... . ......+||+|||+..|
T Consensus 85 ~~c~~k~~e~~~~~~~~r~v~~v~lPl~-ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL------- 156 (423)
T COG1239 85 DECRAKGDELEWLPREKRKVPFVALPLG-ATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL------- 156 (423)
T ss_pred HHHHhhccccccccccceecceecCCCc-cchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-------
Confidence 00 01110 1111110 0 01123469999999877
Q ss_pred cCcHHHHHHHHHHHHHh----C------CCCCCEEEEEEeCCC-CCCcHHHHccccceEecCCC-CHHHHHHHHHHHHHh
Q 006700 466 HMSEAQRSALNALLFRT----G------DQSRDIVLVLATNRP-GDLDSAITDRIDEVIEFPLP-REEERFKLLKLYLKK 533 (635)
Q Consensus 466 ~~~~~~~~~L~~ll~~~----~------~~~~~viiI~ttN~~-~~l~~~l~~R~d~~i~~~~p-~~~er~~Il~~~l~~ 533 (635)
....+.+|...+..- . ..+.+|++|+|+|+- ..|.|.|++||...|.+..| +.++|..|+...+.-
T Consensus 157 --~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 157 --DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred --cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 455666665555441 1 245689999999965 48999999999999998765 468888888887653
Q ss_pred hcCCCCCCCCccchhh-------hhhhhhhhhhccCCCHHHHHHHHHHcC--CCC-HHHHHHHHHHHHHHHHcCCCCccC
Q 006700 534 YLCSDEGDSSSLKWGH-------LFKKQQQKITIKDLSDNVIQEAARKTE--GFS-GREIAKLMASVQAAVYARPDCVLD 603 (635)
Q Consensus 534 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~la~~t~--G~s-grdI~~L~~~~q~aa~~s~~~~lt 603 (635)
. . .+..+...|.. ........+.-..+++.....++..+. +.. .|-.--++....+.+...+...++
T Consensus 235 ~-~--~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~ 311 (423)
T COG1239 235 E-A--VPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVE 311 (423)
T ss_pred h-c--CcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeee
Confidence 1 1 11111111111 111123334444577777777776542 222 222223445566666666778899
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 006700 604 SQLFREVVEYKVEEHHQR 621 (635)
Q Consensus 604 ~~~i~~~l~~~~~~~~~~ 621 (635)
.++++.+..-..+-..++
T Consensus 312 ~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 312 EEDIREAAELALLHRRRR 329 (423)
T ss_pred hhhHHHHHhhhhhhhhcc
Confidence 999999998876643333
No 220
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.16 E-value=2.4e-09 Score=123.73 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=129.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHH----HHHH---HHhhcCCcEEEEecCchhhhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH----EIFD---WAKKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~----~~f~---~a~~~~~~~vL~iDEid~l~~ 460 (635)
.||||+|+||||||.+|+.+++...... ..+|......+........ +-+. .+.....+++|+|||++.+
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm-- 569 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC-- 569 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC--
Confidence 3899999999999999999998754322 1122221111111100000 0000 0111223579999999987
Q ss_pred hcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEEEeCCCC-------------CCcHHHHccccceE-ecC
Q 006700 461 ERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVLATNRPG-------------DLDSAITDRIDEVI-EFP 516 (635)
Q Consensus 461 ~r~~~~~~~~~~~~L~~ll~~~~----------~~~~~viiI~ttN~~~-------------~l~~~l~~R~d~~i-~~~ 516 (635)
+...+..|..++..-. ..+.++.||+|+|+.. .|++.+++|||.++ .++
T Consensus 570 -------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D 642 (915)
T PTZ00111 570 -------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLD 642 (915)
T ss_pred -------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecC
Confidence 4566666666653311 1345789999999742 47899999999764 557
Q ss_pred CCCHHHHHHHHHHHHHhhcCC---CCCC------------------CCc---cch-hhhhhhh----hhhhhccCCCHHH
Q 006700 517 LPREEERFKLLKLYLKKYLCS---DEGD------------------SSS---LKW-GHLFKKQ----QQKITIKDLSDNV 567 (635)
Q Consensus 517 ~p~~~er~~Il~~~l~~~~~~---~~~~------------------~~~---~~~-~~~~~~~----~~~~~~~~~~~~~ 567 (635)
.|+.+.=..|..+.+..+... .... ... ..+ ..++++. +..+. ..+++++
T Consensus 643 ~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA 721 (915)
T PTZ00111 643 HIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEA 721 (915)
T ss_pred CCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHH
Confidence 788776666666665432110 0000 000 001 1222221 11111 2377777
Q ss_pred HHHHHH-----Hc--------------------------C-----CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 568 IQEAAR-----KT--------------------------E-----GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 568 l~~la~-----~t--------------------------~-----G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
.+.|.. +- . -.+.|.|..|+...++.|...-...+|.+|+..++
T Consensus 722 ~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai 801 (915)
T PTZ00111 722 KKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAV 801 (915)
T ss_pred HHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHH
Confidence 666643 10 1 15789999999999999988888999999999998
Q ss_pred HHHHh
Q 006700 612 EYKVE 616 (635)
Q Consensus 612 ~~~~~ 616 (635)
.-+..
T Consensus 802 ~L~~~ 806 (915)
T PTZ00111 802 QIVKS 806 (915)
T ss_pred HHHHH
Confidence 87643
No 221
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=3.6e-10 Score=121.90 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=85.0
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-----eeeccCC------Cc--
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-----YAMMTGG------DV-- 423 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-----~~~l~~~------~~-- 423 (635)
++++++.+...+.+...+.. .++++|+||||||||++|+.+|..++.. +..+..+ ++
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 67777777766666444331 2369999999999999999999987431 1111111 10
Q ss_pred ----ccchhhH-HHHHHHHHHHHhhc-CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------------
Q 006700 424 ----APLGAQA-VTKIHEIFDWAKKS-KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-------------- 483 (635)
Q Consensus 424 ----~~~~~~~-~~~l~~~f~~a~~~-~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-------------- 483 (635)
...+... .+.+..++..|... ..++||||||++..... .++..++..++
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~-----------kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS-----------KVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH-----------Hhhhhhhhhccccccccccceeeec
Confidence 1111110 12233444555443 35789999999975321 12222222111
Q ss_pred --------CCCCCEEEEEEeCCCC----CCcHHHHccccceEecCC
Q 006700 484 --------DQSRDIVLVLATNRPG----DLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 484 --------~~~~~viiI~ttN~~~----~l~~~l~~R~d~~i~~~~ 517 (635)
..+.|+.||+|+|..+ .+|.++++|| ..|.+.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 1356899999999877 7999999999 6777765
No 222
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.13 E-value=4.3e-10 Score=102.07 Aligned_cols=122 Identities=25% Similarity=0.360 Sum_probs=78.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC---eeeccCCCccc---------------chhhHHHHHHHHHHHHhhcCCcEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAP---------------LGAQAVTKIHEIFDWAKKSKKGLL 449 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~---~~~l~~~~~~~---------------~~~~~~~~l~~~f~~a~~~~~~~v 449 (635)
.+++|+||||||||++++.++..++.. ++.+++..... ............+..+.... +.|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CCE
Confidence 579999999999999999999999775 66666654322 11233445566777776554 689
Q ss_pred EEecCchhhhhhcccccCcHHHHHHHHH----HHHHhCCCCCCEEEEEEeCC-CCCCcHHHHccccceEecCCC
Q 006700 450 LFIDEADAFLCERNSIHMSEAQRSALNA----LLFRTGDQSRDIVLVLATNR-PGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 450 L~iDEid~l~~~r~~~~~~~~~~~~L~~----ll~~~~~~~~~viiI~ttN~-~~~l~~~l~~R~d~~i~~~~p 518 (635)
|||||++.+..... ...... ..........++.+|+++|. ....+..+..|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ--------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH--------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999998853211 111110 00111123456788999986 334455555688888777654
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=1.5e-11 Score=110.14 Aligned_cols=112 Identities=24% Similarity=0.324 Sum_probs=58.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCC-Cccc--c-hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG-DVAP--L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS 464 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~-~~~~--~-~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~ 464 (635)
|+||.|+||+|||++|+++|+.+|..|.++.+. ++.+ + |......-...|.+...---..|||+|||++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 699999999999999999999999999988764 3332 1 100000000111110000012489999999863
Q ss_pred ccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCC-----CCcHHHHccc
Q 006700 465 IHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPG-----DLDSAITDRI 509 (635)
Q Consensus 465 ~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~~-----~l~~~l~~R~ 509 (635)
...+..|...+.+-. ..+.+++||+|-|..+ .++.++++||
T Consensus 76 ----pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 ----PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ----HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 445555555554421 2456789999999866 6889999998
No 224
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=3.6e-09 Score=106.67 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=87.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCCCe--------------eeccCCCcc-------cchhhHHHHHHHHHHHHh-h
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDY--------------AMMTGGDVA-------PLGAQAVTKIHEIFDWAK-K 443 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~~~--------------~~l~~~~~~-------~~~~~~~~~l~~~f~~a~-~ 443 (635)
+++.+||+||+|+||..+|..+|..+-+.- ..-+.+|+. +++.+....+...+.... .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 456799999999999999999998873211 011112211 133333444444333221 1
Q ss_pred cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCC
Q 006700 444 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 444 ~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p 518 (635)
.+.+.|++||++|.|. ....|.||..+++++.++++|++|+.++.+.|.++||+ ..+.|+.+
T Consensus 86 ~~~~KV~II~~ae~m~------------~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYGIEKLN------------KQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred cCCCEEEEeccHhhhC------------HHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 2346899999999873 46789999999999999999999999999999999999 77888777
No 225
>PRK08116 hypothetical protein; Validated
Probab=99.09 E-value=6.1e-10 Score=114.60 Aligned_cols=163 Identities=18% Similarity=0.138 Sum_probs=90.7
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA 430 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~ 430 (635)
..+|++++..+.....+..+...+.+.........+++|+||||||||+||.++++.+ +.+++.++..++.......
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKST 160 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 3467777655555444443333333222111223469999999999999999999986 6677777655533211000
Q ss_pred -----HHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-C----
Q 006700 431 -----VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-D---- 500 (635)
Q Consensus 431 -----~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-~---- 500 (635)
......++.. .....+|+|||++.. ..+...+..|..++...- ..+..+|+|||.+. .
T Consensus 161 ~~~~~~~~~~~~~~~---l~~~dlLviDDlg~e-------~~t~~~~~~l~~iin~r~--~~~~~~IiTsN~~~~eL~~~ 228 (268)
T PRK08116 161 YKSSGKEDENEIIRS---LVNADLLILDDLGAE-------RDTEWAREKVYNIIDSRY--RKGLPTIVTTNLSLEELKNQ 228 (268)
T ss_pred HhccccccHHHHHHH---hcCCCEEEEecccCC-------CCCHHHHHHHHHHHHHHH--HCCCCEEEECCCCHHHHHHH
Confidence 0111122222 223569999999642 112344444555554322 12235888999642 2
Q ss_pred CcHHHHccc---cceEecCCCCHHHHHHHHHHH
Q 006700 501 LDSAITDRI---DEVIEFPLPREEERFKLLKLY 530 (635)
Q Consensus 501 l~~~l~~R~---d~~i~~~~p~~~er~~Il~~~ 530 (635)
++..+.+|+ ...|.|+.++. |..+.+..
T Consensus 229 ~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ek 259 (268)
T PRK08116 229 YGKRIYDRILEMCTPVENEGKSY--RKEIAKEK 259 (268)
T ss_pred HhHHHHHHHHHcCEEEEeeCcCh--hHHHHHHH
Confidence 567888885 34566666664 44444433
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1e-09 Score=115.74 Aligned_cols=132 Identities=22% Similarity=0.257 Sum_probs=90.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCee---eccC--------------CCcccchh-------------hHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYA---MMTG--------------GDVAPLGA-------------QAVTKI 434 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~---~l~~--------------~~~~~~~~-------------~~~~~l 434 (635)
+.++.+||+||+|+|||++|+.+|+.+.+.-- ...| .|+..+.. -....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999998743110 0001 11111110 124455
Q ss_pred HHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccc
Q 006700 435 HEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDE 511 (635)
Q Consensus 435 ~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~ 511 (635)
+.+...+.. .....|++||+++.| +.. ..+.++..+++.+.++.||++|+.++.+.+.+.+|| .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d~~---a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc-~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------NLQ---AANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC-R 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------CHH---HHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh-h
Confidence 555555443 345679999999987 333 444555555555566889999999999999999999 9
Q ss_pred eEecCCCCHHHHHHHHHH
Q 006700 512 VIEFPLPREEERFKLLKL 529 (635)
Q Consensus 512 ~i~~~~p~~~er~~Il~~ 529 (635)
.+.|++|+.++....|..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999987776643
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-09 Score=114.45 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=105.2
Q ss_pred HHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC-ccc-chhhHHHHHHHHHHHHhhcCCcEEE
Q 006700 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAP-LGAQAVTKIHEIFDWAKKSKKGLLL 450 (635)
Q Consensus 373 l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~-~~~-~~~~~~~~l~~~f~~a~~~~~~~vL 450 (635)
++..++++. ..+..++||+||||+|||.||-.+|..++.||+.+..++ +.. ....-+.++..+|+.|.++. -+||
T Consensus 526 lv~qvk~s~--~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsii 602 (744)
T KOG0741|consen 526 LVQQVKNSE--RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSII 602 (744)
T ss_pred HHHHhhccc--cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEE
Confidence 344444433 346678999999999999999999999999999875543 333 34456678999999998765 5899
Q ss_pred EecCchhhhhhcc-cccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCc-HHHHccccceEecCCCCH-HHHHHHH
Q 006700 451 FIDEADAFLCERN-SIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD-SAITDRIDEVIEFPLPRE-EERFKLL 527 (635)
Q Consensus 451 ~iDEid~l~~~r~-~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~-~~l~~R~d~~i~~~~p~~-~er~~Il 527 (635)
++|+++.++.=.. +..++....+.|..||.......++..|++||...+.+. -.+.+.|+..+.+|..+. ++...++
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHH
Confidence 9999999864221 122334444455555544444444666677776544332 356678999999988776 6666665
Q ss_pred HH
Q 006700 528 KL 529 (635)
Q Consensus 528 ~~ 529 (635)
..
T Consensus 683 ~~ 684 (744)
T KOG0741|consen 683 EE 684 (744)
T ss_pred HH
Confidence 53
No 228
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3.3e-09 Score=112.58 Aligned_cols=199 Identities=19% Similarity=0.216 Sum_probs=135.0
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-----CeeeccCCCcccch-----
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLG----- 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-----~~~~l~~~~~~~~~----- 427 (635)
+.++|-+.-+..++.+...-... ...+++++.|-||||||.+...+-..++. ..++++|..+....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 66788777777777665543322 23457999999999999998877665532 34677777543211
Q ss_pred -----------hhHHHHHHHHHHH-HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe
Q 006700 428 -----------AQAVTKIHEIFDW-AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT 495 (635)
Q Consensus 428 -----------~~~~~~l~~~f~~-a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt 495 (635)
..........|.. ........||++||+|.|... .+.+|..+..+-.-...++++|+..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr---------~~~vLy~lFewp~lp~sr~iLiGiA 296 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR---------SQTVLYTLFEWPKLPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc---------ccceeeeehhcccCCcceeeeeeeh
Confidence 1111122233333 223345789999999999732 2456666666666677889999999
Q ss_pred CCCCCCc---HHHHccc---cceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHH
Q 006700 496 NRPGDLD---SAITDRI---DEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQ 569 (635)
Q Consensus 496 N~~~~l~---~~l~~R~---d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 569 (635)
|..+.-| +.+..|+ ...+.|++|+.+++.+||...+..... ..+-+.++.
T Consensus 297 NslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t------------------------~~~~~~Aie 352 (529)
T KOG2227|consen 297 NSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST------------------------SIFLNAAIE 352 (529)
T ss_pred hhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc------------------------cccchHHHH
Confidence 9766433 3333332 368999999999999999998876543 013446889
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q 006700 570 EAARKTEGFSGREIAKLMASVQAAV 594 (635)
Q Consensus 570 ~la~~t~G~sgrdI~~L~~~~q~aa 594 (635)
.+|++..|.|| |+++++..++.++
T Consensus 353 ~~ArKvaa~SG-DlRkaLdv~R~ai 376 (529)
T KOG2227|consen 353 LCARKVAAPSG-DLRKALDVCRRAI 376 (529)
T ss_pred HHHHHhccCch-hHHHHHHHHHHHH
Confidence 99999999898 9999998777543
No 229
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.9e-09 Score=109.52 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=88.2
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCee--------eccCCCcc---c------chhhHHHHHHHHHHHHhhcCC
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--------MMTGGDVA---P------LGAQAVTKIHEIFDWAKKSKK 446 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~--------~l~~~~~~---~------~~~~~~~~l~~~f~~a~~~~~ 446 (635)
+..++.+||+||+|+||+.+|..+|..+-+.-. ..+.+|+. + ++.+....+...+.......+
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 344467999999999999999999998844210 11112221 1 222333333333333233355
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCC
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
+.|++||++|.|. ...-|.||..+++++.++++|+.|+.++.+.|.++||| ..+.|+++.
T Consensus 96 ~kv~ii~~ad~mt------------~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 96 YKIYIIHEADRMT------------LDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccchh
Confidence 6899999999873 45788999999999999999999999999999999999 888888763
No 230
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.04 E-value=3e-09 Score=120.84 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=86.1
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------------------CCCCCEEEEEEeCCC--CCCcHHHH
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------------------DQSRDIVLVLATNRP--GDLDSAIT 506 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------------------~~~~~viiI~ttN~~--~~l~~~l~ 506 (635)
+++|||||++.| +...+..|..+|+.-. ..+.++.||+++|.. ..++|.|.
T Consensus 227 GGtL~LDei~~L---------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~ 297 (637)
T PRK13765 227 KGVLFIDEINTL---------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALR 297 (637)
T ss_pred CcEEEEeChHhC---------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHH
Confidence 578999999987 3455666666664311 012367899999874 46799999
Q ss_pred cccc---ceEecCC--C-CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC---C
Q 006700 507 DRID---EVIEFPL--P-REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE---G 577 (635)
Q Consensus 507 ~R~d---~~i~~~~--p-~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~---G 577 (635)
.||. ..+.|+. + +.+.+..++..+...... . + . ...++.+++..|...+. |
T Consensus 298 ~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~-~-G----------------~--l~~f~~eAVa~LI~~~~R~ag 357 (637)
T PRK13765 298 SRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKR-D-G----------------K--IPHFDRDAVEEIIREAKRRAG 357 (637)
T ss_pred HHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhh-c-c----------------C--CCCCCHHHHHHHHHHHHHHhC
Confidence 9985 4556542 2 234444455433322211 0 0 0 11378888887775432 2
Q ss_pred ------CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 578 ------FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 578 ------~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
+..++|..|+..+...+...+...++.+++.+++.
T Consensus 358 ~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 358 RKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 34678888888777777776777899999887764
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.02 E-value=7.1e-10 Score=102.61 Aligned_cols=126 Identities=25% Similarity=0.425 Sum_probs=84.2
Q ss_pred ccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC---CeeeccCCCcccchhhHHHHHHHH
Q 006700 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGDVAPLGAQAVTKIHEI 437 (635)
Q Consensus 361 ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~---~~~~l~~~~~~~~~~~~~~~l~~~ 437 (635)
||.....+.+..-+..+.....+ |||+|++||||+++|+.|+...+. +|+.++|.... .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~p------vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~ 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSP------VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AEL 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCc------EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHH
Confidence 56677777777777766655443 999999999999999999998754 55555555422 234
Q ss_pred HHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-------CCCcHHHHcccc
Q 006700 438 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-------GDLDSAITDRID 510 (635)
Q Consensus 438 f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-------~~l~~~l~~R~d 510 (635)
+..+ .+++|||+|+|.+ +...+..|..++.... ..++.+|++|..+ ..+++.+..||.
T Consensus 65 l~~a----~~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 65 LEQA----KGGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHC----TTSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred HHHc----CCCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 4333 3779999999988 4666777777776643 4556788887643 247788888885
Q ss_pred -ceEecCC
Q 006700 511 -EVIEFPL 517 (635)
Q Consensus 511 -~~i~~~~ 517 (635)
..|.+|+
T Consensus 130 ~~~i~lPp 137 (138)
T PF14532_consen 130 QLEIHLPP 137 (138)
T ss_dssp TCEEEE--
T ss_pred CCEEeCCC
Confidence 3444443
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.02 E-value=1.2e-08 Score=113.76 Aligned_cols=210 Identities=20% Similarity=0.233 Sum_probs=125.7
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc-cc------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-AP------ 425 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~-~~------ 425 (635)
.+...+++..+..-.+.|+..+..... +..+.+-+||+||||||||++++.||+++|..+..-..+.. ..
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~---~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~ 90 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFS---GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQED 90 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhc---cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccc
Confidence 344568888888777777766654332 22234468899999999999999999999987766432211 00
Q ss_pred -chh---------hHHHHHHHH-HHHHhh----------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 426 -LGA---------QAVTKIHEI-FDWAKK----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 426 -~~~---------~~~~~l~~~-f~~a~~----------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
+.+ .....+..+ +...+. .....||+|||+-.++... ....+..|..++..
T Consensus 91 d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~~--- 162 (519)
T PF03215_consen 91 DFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLRS--- 162 (519)
T ss_pred cccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHHc---
Confidence 000 001111111 111111 1235799999997654211 12333444444432
Q ss_pred CCC-CEEEEEE-e------C-CC-------CCCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 006700 485 QSR-DIVLVLA-T------N-RP-------GDLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK 546 (635)
Q Consensus 485 ~~~-~viiI~t-t------N-~~-------~~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~ 546 (635)
... ++|||+| + | .. ..+++.++. ++ .+|.|.+-...-..+.|...+..... ..
T Consensus 163 ~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~-~~------- 233 (519)
T PF03215_consen 163 SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEAR-SS------- 233 (519)
T ss_pred CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhh-hh-------
Confidence 222 7788887 1 1 11 146777876 44 78999999998888888887765421 00
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 006700 547 WGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY 595 (635)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~ 595 (635)
..... .......++.|+..+.| ||+..++.+|..+.
T Consensus 234 --------~~~~~-~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 --------SGKNK-VPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred --------cCCcc-CCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 00000 01224568999988777 99999999999887
No 233
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.01 E-value=1.4e-09 Score=119.80 Aligned_cols=205 Identities=22% Similarity=0.282 Sum_probs=141.7
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC--CCeeeccCCCccc--chhhHHHHHHHH
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAP--LGAQAVTKIHEI 437 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~--~~~~~l~~~~~~~--~~~~~~~~l~~~ 437 (635)
+.+.....+...+..+.....+ +|++|.|||||-.++++|+..++ .||+.+||+-+.. ++.+.++.+...
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~p------vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga 390 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLP------VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA 390 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCC------eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc
Confidence 4444444444444444444443 99999999999999999998874 5899999998765 444555555555
Q ss_pred HHHHhh--------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-------CCCCCEEEEEEeCCC----
Q 006700 438 FDWAKK--------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-------DQSRDIVLVLATNRP---- 498 (635)
Q Consensus 438 f~~a~~--------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-------~~~~~viiI~ttN~~---- 498 (635)
|+.+.. ...++.||+|||..| +-..+..|..+|++-. ....+|.||.+|+.+
T Consensus 391 fTga~~kG~~g~~~~A~gGtlFldeIgd~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~l 461 (606)
T COG3284 391 FTGARRKGYKGKLEQADGGTLFLDEIGDM---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQL 461 (606)
T ss_pred cccchhccccccceecCCCccHHHHhhhc---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHH
Confidence 554432 334678999999876 5677777777776621 234578999999864
Q ss_pred ---CCCcHHHHccccceEecCCCCHHHHHH---HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHH
Q 006700 499 ---GDLDSAITDRIDEVIEFPLPREEERFK---LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAA 572 (635)
Q Consensus 499 ---~~l~~~l~~R~d~~i~~~~p~~~er~~---Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 572 (635)
..|...+.-|+ ..+.|.+|+..+|.+ +|.+++.++.. ..+ .++++++..|.
T Consensus 462 v~~g~fredLyyrL-~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-------------------~~~---~l~~~~~~~l~ 518 (606)
T COG3284 462 VEQGRFREDLYYRL-NAFVITLPPLRERSDRIPLLDRILKREND-------------------WRL---QLDDDALARLL 518 (606)
T ss_pred HHcCCchHHHHHHh-cCeeeccCchhcccccHHHHHHHHHHccC-------------------CCc---cCCHHHHHHHH
Confidence 45677777788 677788888877765 56666655432 111 27888888877
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 573 RKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 573 ~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
.+ -|.| +|+.|-+.+..++..++++.+...++
T Consensus 519 ~~--~WPG-Nirel~~v~~~~~~l~~~g~~~~~dl 550 (606)
T COG3284 519 AY--RWPG-NIRELDNVIERLAALSDGGRIRVSDL 550 (606)
T ss_pred hC--CCCC-cHHHHHHHHHHHHHcCCCCeeEcccC
Confidence 44 5565 99999999999998888775544433
No 234
>PRK12377 putative replication protein; Provisional
Probab=98.98 E-value=2.6e-09 Score=108.26 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=70.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHH---HHHHHHHHHHhhcCCcEEEEecCchhhhhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAV---TKIHEIFDWAKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~---~~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 461 (635)
.+++|+||||||||+||.+|++.+ |..++.++..++........ .....++.. .....||+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~---l~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE---LCKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH---hcCCCEEEEcCCCCCC--
Confidence 579999999999999999999987 55565555544432111110 011122222 2346799999997542
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-----CCcHHHHcccc----ceEecCCCC
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-----DLDSAITDRID----EVIEFPLPR 519 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-----~l~~~l~~R~d----~~i~~~~p~ 519 (635)
.+......|..++..-... ...+|+|||... .+...++||+- ..|.|.-++
T Consensus 177 -----~s~~~~~~l~~ii~~R~~~--~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 177 -----ETKNEQVVLNQIIDRRTAS--MRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred -----CCHHHHHHHHHHHHHHHhc--CCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 1344455666665443222 234788999642 35566777662 235555544
No 235
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.4e-08 Score=104.87 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=89.3
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCCee----------------eccCCCcccchh----hHHHHHHHHHHHH--
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA----------------MMTGGDVAPLGA----QAVTKIHEIFDWA-- 441 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~----------------~l~~~~~~~~~~----~~~~~l~~~f~~a-- 441 (635)
++.++.+||+|| +||+++|+.+|..+-+.-. .-+.+|+..+.. -....++++....
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 445567999996 6899999999998733210 011222211111 1123444444333
Q ss_pred -hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCH
Q 006700 442 -KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPRE 520 (635)
Q Consensus 442 -~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~ 520 (635)
...+++.|++||++|.|. ....|.||..+++++.++++|++|+.++.+.|.++||| ..|.|+. +.
T Consensus 99 ~p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~ 164 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMH------------VNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-NE 164 (290)
T ss_pred CcccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-cH
Confidence 333456899999999873 45789999999999999999999999999999999999 8999976 55
Q ss_pred HHHHHHHH
Q 006700 521 EERFKLLK 528 (635)
Q Consensus 521 ~er~~Il~ 528 (635)
++..+++.
T Consensus 165 ~~~~~~L~ 172 (290)
T PRK07276 165 AYLIQLLE 172 (290)
T ss_pred HHHHHHHH
Confidence 55444443
No 236
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.95 E-value=9.1e-09 Score=116.10 Aligned_cols=202 Identities=9% Similarity=0.059 Sum_probs=131.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCccc--chhhHHHHHHHHHHHHh--------hcCCcEEEEec
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP--LGAQAVTKIHEIFDWAK--------KSKKGLLLFID 453 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~~--~~~~~~~~l~~~f~~a~--------~~~~~~vL~iD 453 (635)
..++|||.|++||||+++++.|+..+.. ||..+..+--.. +|+- .+...+..-. ....++|||||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~---Dl~~~l~~g~~~~~pGlla~Ah~GvL~lD 100 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL---DLAATLRAGRPVAQRGLLAEADGGVLVLA 100 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc---hHHhHhhcCCcCCCCCceeeccCCEEEec
Confidence 3468999999999999999999999854 776654322111 2211 1111111100 11235799999
Q ss_pred CchhhhhhcccccCcHHHHHHHHHHHHHhCC-------------CCCCEEEEEEeCCC---CCCcHHHHccccceEecCC
Q 006700 454 EADAFLCERNSIHMSEAQRSALNALLFRTGD-------------QSRDIVLVLATNRP---GDLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 454 Eid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-------------~~~~viiI~ttN~~---~~l~~~l~~R~d~~i~~~~ 517 (635)
|+..|- ..++..|++-+++ .+.+|++|+|-|.. ..|++.+++||+.+|.++.
T Consensus 101 e~n~~~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~ 168 (584)
T PRK13406 101 MAERLE------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDG 168 (584)
T ss_pred CcccCC------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCC
Confidence 999772 3455555555543 34678899875432 4589999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHH
Q 006700 518 PREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--EGF-SGREIAKLMASVQAAV 594 (635)
Q Consensus 518 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~G~-sgrdI~~L~~~~q~aa 594 (635)
|+..+.... .. . ..++... ...+.-..+++..+.+++..+ .|. |.|-...++..+++.+
T Consensus 169 ~~~~~~~~~--------~~-----~----~~~I~~A-R~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~A 230 (584)
T PRK13406 169 LALRDAREI--------PI-----D----ADDIAAA-RARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAA 230 (584)
T ss_pred CChHHhccc--------CC-----C----HHHHHHH-HHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Confidence 987654310 00 0 0011111 111112237888877776543 365 7788888999999999
Q ss_pred HcCCCCccCHHHHHHHHHHHHhhhhh
Q 006700 595 YARPDCVLDSQLFREVVEYKVEEHHQ 620 (635)
Q Consensus 595 ~~s~~~~lt~~~i~~~l~~~~~~~~~ 620 (635)
...+...|+.+||.+++...+.-...
T Consensus 231 aL~Gr~~V~~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 231 ALAGRTAVEEEDLALAARLVLAPRAT 256 (584)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhhcc
Confidence 99899999999999999999974443
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.94 E-value=7.3e-08 Score=101.75 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=70.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhH----HHHHHHHHHHHhhcCCcEEEEecCchhhhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA----VTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~----~~~l~~~f~~a~~~~~~~vL~iDEid~l~~ 460 (635)
.+++|+||||||||+|+.++|+.+ |..++.++..++....... .......+.. .....+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~---l~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL---LINCDLLIIDDLGTEKI 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH---hccCCEEEEeccCCCCC
Confidence 579999999999999999999987 6667777665543311110 0011111222 22357999999976521
Q ss_pred hcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-C----CCcHHHHcccc---ceEecCCCC
Q 006700 461 ERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-G----DLDSAITDRID---EVIEFPLPR 519 (635)
Q Consensus 461 ~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-~----~l~~~l~~R~d---~~i~~~~p~ 519 (635)
+......|..++...-... -.+|+|||.+ . .+++.+.+|+- .+|.|.-.+
T Consensus 261 -------t~~~~~~Lf~iin~R~~~~--k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 261 -------TEFSKSELFNLINKRLLRQ--KKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred -------CHHHHHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 2333444444444332222 2488899853 2 35677888863 345554333
No 238
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=4.1e-08 Score=102.20 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=94.0
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhCCC-------------eeecc--CCCcccchhhHHHHHHHHHHHHhhc----
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLD-------------YAMMT--GGDVAPLGAQAVTKIHEIFDWAKKS---- 444 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-------------~~~l~--~~~~~~~~~~~~~~l~~~f~~a~~~---- 444 (635)
+...+.+||+|+.|+||+++++.+++.+-+. +..++ +. ... ...++.+.......
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~---~i~---vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK---DLS---KSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC---cCC---HHHHHHHHHHhccCCccc
Confidence 3344568899999999999999999987331 22222 11 111 23444444443222
Q ss_pred CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHH
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERF 524 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~ 524 (635)
+.+.|++||++|.+. ....|.||..+++++.++++|++|+.++.+-+.+.+|| .++.|.+|+.++..
T Consensus 89 ~~~KvvII~~~e~m~------------~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 89 SQKKILIIKNIEKTS------------NSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred CCceEEEEecccccC------------HHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 367899999998772 44678899999999999999999998899999999999 89999999998877
Q ss_pred HHHHH
Q 006700 525 KLLKL 529 (635)
Q Consensus 525 ~Il~~ 529 (635)
..+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 66553
No 239
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=1e-08 Score=102.32 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=90.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCC---CeeeccCCCccc------c------------------------------h
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGDVAP------L------------------------------G 427 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~---~~~~l~~~~~~~------~------------------------------~ 427 (635)
..+++|+||.|+|||++++.+...+.. ..+.+....... . .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 357999999999999999999998832 111111111000 0 0
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhh-hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC------C
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL-CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG------D 500 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~-~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~------~ 500 (635)
......+..++..........||+|||++.+. .... .......|..++.... ...++.+|+++.... .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----~~~~~~~l~~~~~~~~-~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----DKDFLKSLRSLLDSLL-SQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----THHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----hHHHHHHHHHHHhhcc-ccCCceEEEECCchHHHHHhhc
Confidence 11233455555555555445899999999997 2111 1333344445544432 234455555443321 1
Q ss_pred CcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 501 LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 501 l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
-...+..|+.. +.+++.+.++..+++...+... . .+ .+++..++.+...|.|. |
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~----------------------~~-~~~~~~~~~i~~~~gG~-P 228 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I----------------------KL-PFSDEDIEEIYSLTGGN-P 228 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------------------------------HHHHHHHHHHHTT--H
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h----------------------cc-cCCHHHHHHHHHHhCCC-H
Confidence 22345668855 9999999999999999887654 2 00 15889999999999884 4
Q ss_pred HHHH
Q 006700 581 REIA 584 (635)
Q Consensus 581 rdI~ 584 (635)
+-|.
T Consensus 229 ~~l~ 232 (234)
T PF01637_consen 229 RYLQ 232 (234)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4554
No 240
>PRK08181 transposase; Validated
Probab=98.87 E-value=6.3e-09 Score=106.71 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=72.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhh--HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ--AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~--~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
.+++|+||||||||+|+.+++..+ |..++.++..++...... ....+...+... ..+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l---~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL---DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH---hcCCEEEEeccccccC--
Confidence 469999999999999999999765 566666655444331111 111222333332 3467999999987632
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----------CCcHHHHcccc---ceEecCCCCHH
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----------DLDSAITDRID---EVIEFPLPREE 521 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~----------~l~~~l~~R~d---~~i~~~~p~~~ 521 (635)
+......|..++...... -.+|+|||.+- .+..++++|+- .+|.|.-.+..
T Consensus 182 -----~~~~~~~Lf~lin~R~~~---~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 182 -----DQAETSVLFELISARYER---RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred -----CHHHHHHHHHHHHHHHhC---CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 233344455555433222 24888999642 23467778863 45666655543
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.87 E-value=1.3e-08 Score=102.94 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=87.7
Q ss_pred cccCCcccc-ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhh
Q 006700 354 IKNNGDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ 429 (635)
Q Consensus 354 ~~~~~~vig-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~ 429 (635)
..+|+++.. .+.....+..+.....+... ...+++|+||||||||+|+.+|+.++ |..++.++..++......
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~---~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~ 144 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDG---NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD 144 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH
Confidence 446777654 33444444444444433211 13479999999999999999999988 666666665554321111
Q ss_pred H----HHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-----C
Q 006700 430 A----VTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-----D 500 (635)
Q Consensus 430 ~----~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-----~ 500 (635)
. ......++... ....||+|||++... .+......|..++..- ...+..+|+|||... .
T Consensus 145 ~~~~~~~~~~~~l~~l---~~~dlLvIDDig~~~-------~s~~~~~~l~~Ii~~R--y~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 145 TFSNSETSEEQLLNDL---SNVDLLVIDEIGVQT-------ESRYEKVIINQIVDRR--SSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred HHhhccccHHHHHHHh---ccCCEEEEeCCCCCC-------CCHHHHHHHHHHHHHH--HhCCCCEEEeCCCCHHHHHHH
Confidence 1 11122333332 236799999998752 1344455666666442 122345888999642 4
Q ss_pred CcHHHHcccc----ceEecCCCC
Q 006700 501 LDSAITDRID----EVIEFPLPR 519 (635)
Q Consensus 501 l~~~l~~R~d----~~i~~~~p~ 519 (635)
++..+.+|+- ..|.|.-++
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCCc
Confidence 5667777762 356666544
No 242
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.86 E-value=2e-07 Score=92.61 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=125.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCC---eeeccCCCccc----------chh--------hHHHHHHHHHHHHhhcCCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLD---YAMMTGGDVAP----------LGA--------QAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~---~~~l~~~~~~~----------~~~--------~~~~~l~~~f~~a~~~~~~ 447 (635)
-+.++|+.|+|||++++++...++.+ .+++....+.. +.. .....-+.+.....+...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 38899999999999999777666432 12222211111 111 1122223333444455566
Q ss_pred EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC--CCCc----HHHHccccceEecCCCCHH
Q 006700 448 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--GDLD----SAITDRIDEVIEFPLPREE 521 (635)
Q Consensus 448 ~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~--~~l~----~~l~~R~d~~i~~~~p~~~ 521 (635)
.++++||++.+. ......+..|.....+.++...+++..... ..+. ..+..||+..+.+++.+.+
T Consensus 133 v~l~vdEah~L~---------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 133 VVLMVDEAHDLN---------DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred eEEeehhHhhhC---------hhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 899999999873 455667777776666666665566554321 1111 2334489777999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 006700 522 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 601 (635)
Q Consensus 522 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~ 601 (635)
+....+++.++.-.. +. ..++++.+..|...+.|| |+-|..++..+..+++..+...
T Consensus 204 ~t~~yl~~~Le~a~~------------------~~----~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~a~~~~ 260 (269)
T COG3267 204 ETGLYLRHRLEGAGL------------------PE----PLFSDDALLLIHEASQGI-PRLINNLATLALDAAYSAGEDG 260 (269)
T ss_pred HHHHHHHHHHhccCC------------------Cc----ccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999876533 11 137899999999999995 5589999998888888888888
Q ss_pred cCHHHHH
Q 006700 602 LDSQLFR 608 (635)
Q Consensus 602 lt~~~i~ 608 (635)
|+...+.
T Consensus 261 v~~a~~~ 267 (269)
T COG3267 261 VSEAEIK 267 (269)
T ss_pred cchhhcc
Confidence 8876654
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=4e-08 Score=101.29 Aligned_cols=168 Identities=21% Similarity=0.300 Sum_probs=88.6
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-ee--eccCCCcccchhh
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-YA--MMTGGDVAPLGAQ 429 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-~~--~l~~~~~~~~~~~ 429 (635)
|...|.+++.+-.--.+...++...-.... ++||+||+|||||++++.+-..+... +. .++++. ..
T Consensus 5 ~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~------pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~-----~T 73 (272)
T PF12775_consen 5 PEMPFNEILVPTVDTVRYSYLLDLLLSNGR------PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA-----QT 73 (272)
T ss_dssp --------T---HHHHHHHHHHHHHHHCTE------EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T-----TH
T ss_pred cccccceEEeCcHHHHHHHHHHHHHHHcCC------cEEEECCCCCchhHHHHhhhccCCccccceeEeeccC-----CC
Confidence 334555555543333344444444433322 49999999999999999877665432 22 222222 11
Q ss_pred HHHHHHHHHHHHhh----------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CC-------CCCEE
Q 006700 430 AVTKIHEIFDWAKK----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQ-------SRDIV 490 (635)
Q Consensus 430 ~~~~l~~~f~~a~~----------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~-------~~~vi 490 (635)
+...+..++..... .++..|+||||++.-.++ ..+ +....+.|..++..-+ +. -.++.
T Consensus 74 ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d--~yg-tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~ 150 (272)
T PF12775_consen 74 TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPD--KYG-TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQ 150 (272)
T ss_dssp HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-----TTS---HHHHHHHHHHHCSEEECTTTTEEEEECSEE
T ss_pred CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCC--CCC-CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeE
Confidence 22222222211110 123469999999854332 222 1223355555554422 11 13688
Q ss_pred EEEEeCCCC---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhc
Q 006700 491 LVLATNRPG---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535 (635)
Q Consensus 491 iI~ttN~~~---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~ 535 (635)
+|+++|.+. .+++.|++.| .++.++.|+.+....|+..++..+.
T Consensus 151 ~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 151 FVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp EEEEESSTTT--SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 999988643 4789999999 8999999999999999999988764
No 244
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.84 E-value=1.1e-07 Score=105.01 Aligned_cols=217 Identities=19% Similarity=0.190 Sum_probs=130.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec-cCCCccc----chhhHHHHHHHHHHH--HhhcCCcEEEEecCchhhhhh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM-TGGDVAP----LGAQAVTKIHEIFDW--AKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l-~~~~~~~----~~~~~~~~l~~~f~~--a~~~~~~~vL~iDEid~l~~~ 461 (635)
||||+|.||||||.+.+.+++.+....+.- .|+.-.. +..+. .-.+++-. |.-...++|..|||||.|
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~--dtkqlVLesGALVLSD~GiCCIDEFDKM--- 538 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDP--DTRQLVLESGALVLSDNGICCIDEFDKM--- 538 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecC--ccceeeeecCcEEEcCCceEEchhhhhh---
Confidence 899999999999999999999875433221 1111000 00000 00011100 111234678999999998
Q ss_pred cccccCcHHHHHHHHHHHHHh----------CCCCCCEEEEEEeCCCC-------------CCcHHHHccccceE-ecCC
Q 006700 462 RNSIHMSEAQRSALNALLFRT----------GDQSRDIVLVLATNRPG-------------DLDSAITDRIDEVI-EFPL 517 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~----------~~~~~~viiI~ttN~~~-------------~l~~~l~~R~d~~i-~~~~ 517 (635)
+...+.+|...++.- ...+..+-||+++|+.. .|+|.+++|||.++ -++.
T Consensus 539 ------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~ 612 (804)
T KOG0478|consen 539 ------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDK 612 (804)
T ss_pred ------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecC
Confidence 456677777766552 13455677999999543 57899999999764 5688
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCccch-hhhhhh---hhhhhhccCCCHHHHHHHHHHc---------CC---CCHH
Q 006700 518 PREEERFKLLKLYLKKYLCSDEGDSSSLKW-GHLFKK---QQQKITIKDLSDNVIQEAARKT---------EG---FSGR 581 (635)
Q Consensus 518 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~la~~t---------~G---~sgr 581 (635)
|+...=+.|..+...-|.... ......-| ..++.. .-.+.....+++++...+.... .| -+++
T Consensus 613 ~DE~~Dr~La~HivsLy~e~~-~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~r 691 (804)
T KOG0478|consen 613 PDERSDRRLADHIVALYPETG-EKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPR 691 (804)
T ss_pred cchhHHHHHHHHHHHhccccc-ccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHH
Confidence 887655566666666554411 11111111 112221 1122122346666665554321 12 2567
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhh
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~ 617 (635)
.+..|+...++.+.......+...|+++++......
T Consensus 692 QlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 692 QLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 888898888888887777889999999998876653
No 245
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.6e-08 Score=111.52 Aligned_cols=246 Identities=18% Similarity=0.175 Sum_probs=145.1
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCC------CCceEEEecCCCCChHHHHHHHHHHhCCCeee-ccCCCcccch--
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQA------PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM-MTGGDVAPLG-- 427 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~------p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~-l~~~~~~~~~-- 427 (635)
.-.+.|++.++++|.-. .+........ .--|+||.|.||||||.|.+.+++.+...++. -.|+.-..+.
T Consensus 285 aPsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 35677888888777422 1221111111 11389999999999999999999887554332 2222211111
Q ss_pred --hhHHHHHHHHHHH--HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEEE
Q 006700 428 --AQAVTKIHEIFDW--AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLVL 493 (635)
Q Consensus 428 --~~~~~~l~~~f~~--a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----------~~~~~viiI~ 493 (635)
.+.. ..++.-. |.-...++|++|||+|.| +...+..+...+..-. ..+..+-|++
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm---------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKM---------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCC---------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 0110 0000000 111234679999999977 3445555544443311 1234566888
Q ss_pred EeCCCC-------------CCcHHHHccccceEec-CCCCHHHHHHHHHHHHHhhcCCCCCCC--------Cccchhhhh
Q 006700 494 ATNRPG-------------DLDSAITDRIDEVIEF-PLPREEERFKLLKLYLKKYLCSDEGDS--------SSLKWGHLF 551 (635)
Q Consensus 494 ttN~~~-------------~l~~~l~~R~d~~i~~-~~p~~~er~~Il~~~l~~~~~~~~~~~--------~~~~~~~~~ 551 (635)
++|+.. +|++.|++|||.++.+ +.|+.+.=..|..+.+..+....+... .......++
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~l 511 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELL 511 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHH
Confidence 888654 4789999999977655 678877667777777766642111100 000001112
Q ss_pred hh----hhhhhhccCCCHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 552 KK----QQQKITIKDLSDNVIQEAARKT---------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 552 ~~----~~~~~~~~~~~~~~l~~la~~t---------------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.. .+..+. ..+++++.+.|...+ ...+.|+|..++...++.|..+-...++.+|+.++++
T Consensus 512 rkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~ 590 (682)
T COG1241 512 RKYISYARKNVT-PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIR 590 (682)
T ss_pred HHHHHHHhccCC-cccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 11 111121 347888877776542 1256899999999999999988889999999999988
Q ss_pred HHHh
Q 006700 613 YKVE 616 (635)
Q Consensus 613 ~~~~ 616 (635)
-...
T Consensus 591 lv~~ 594 (682)
T COG1241 591 LVDF 594 (682)
T ss_pred HHHH
Confidence 7664
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.82 E-value=5.5e-08 Score=102.54 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=46.7
Q ss_pred cCC-ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-------CeeeccC
Q 006700 356 NNG-DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-------DYAMMTG 420 (635)
Q Consensus 356 ~~~-~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-------~~~~l~~ 420 (635)
-|+ +++|+++.+..+-..+.....+.. ...+.++|+||||||||++|++|++.++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 456 899999998887766655443221 22346899999999999999999999865 6666655
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.81 E-value=3.7e-07 Score=98.80 Aligned_cols=209 Identities=17% Similarity=0.226 Sum_probs=118.1
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC----cccchhh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD----VAPLGAQ 429 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~----~~~~~~~ 429 (635)
+...+++-.|..-...|......+... .++.+.+-+||+||+||||||+++.|++++|..++.-+.+- ...+..+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~-~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~ 156 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEF-TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNE 156 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHh-ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccccccc
Confidence 345567777766666666555532221 22334456999999999999999999999998877654211 0111100
Q ss_pred -------HHHHH---HHHHHHHhh-----------cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 006700 430 -------AVTKI---HEIFDWAKK-----------SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 488 (635)
Q Consensus 430 -------~~~~l---~~~f~~a~~-----------~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~ 488 (635)
....+ ......+.+ ...+.+|||||+-..+... .....+.+|..+. ..+ ...
T Consensus 157 t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~g--~~P 229 (634)
T KOG1970|consen 157 TSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SIG--RCP 229 (634)
T ss_pred chhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hcC--CCc
Confidence 11111 112222211 2234689999997665321 1233444444222 112 223
Q ss_pred EEEEEEe-CCCCCCcH------HHH--ccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh
Q 006700 489 IVLVLAT-NRPGDLDS------AIT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559 (635)
Q Consensus 489 viiI~tt-N~~~~l~~------~l~--~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (635)
++||+|- +.++..++ .+. -|+ ..|.|.+-...-..+.|..++........+ +.
T Consensus 230 lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~-----------------~k 291 (634)
T KOG1970|consen 230 LIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSG-----------------IK 291 (634)
T ss_pred EEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccC-----------------Cc
Confidence 4555442 23232222 222 267 789999999988888888888766541111 11
Q ss_pred ccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 006700 560 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 594 (635)
Q Consensus 560 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa 594 (635)
.-+...++.|+..+.| ||+..++.+|..+
T Consensus 292 --~~~~~~v~~i~~~s~G----DIRsAInsLQlss 320 (634)
T KOG1970|consen 292 --VPDTAEVELICQGSGG----DIRSAINSLQLSS 320 (634)
T ss_pred --CchhHHHHHHHHhcCc----cHHHHHhHhhhhc
Confidence 1234567777766666 9999999999884
No 248
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=2.9e-08 Score=90.60 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=74.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC--CCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 466 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~ 466 (635)
.++|+||.|||||++++.+++.+. ..++.+++.+.......... +...+.... .....+|||||++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~iDEiq~~-------- 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELI-KPGKKYIFIDEIQYL-------- 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhh-ccCCcEEEEehhhhh--------
Confidence 589999999999999999998876 67777777664432211111 222222221 124679999999976
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC----CcHHHHccccceEecCCCCHHHH
Q 006700 467 MSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD----LDSAITDRIDEVIEFPLPREEER 523 (635)
Q Consensus 467 ~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~----l~~~l~~R~d~~i~~~~p~~~er 523 (635)
+.....+..+.. ...++.||+|+..... ....+..|+ ..+++.+++..|.
T Consensus 74 --~~~~~~lk~l~d----~~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 --PDWEDALKFLVD----NGPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred --ccHHHHHHHHHH----hccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHHh
Confidence 233444555543 2245667776654333 344555687 6788888887763
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71 E-value=5.1e-08 Score=102.11 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=60.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-chhh-HHHHHHHHHHHHhhcCCcEEEEecCchhhhh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGAQ-AVTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-~~~~-~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~ 460 (635)
...+++|+||+|||||+|+.++|+.+ |..+..++.+++.. +... ..+.+...+.. .....||+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~---l~~~dlLiIDDiG~e~- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA---VKEAPVLMLDDIGAEQ- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH---hcCCCEEEEecCCCcc-
Confidence 34689999999999999999999998 56666555544322 1100 00112233332 2346799999997531
Q ss_pred hcccccCcHHHH-HHHHHHHH-HhCCCCCCEEEEEEeCCC
Q 006700 461 ERNSIHMSEAQR-SALNALLF-RTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 461 ~r~~~~~~~~~~-~~L~~ll~-~~~~~~~~viiI~ttN~~ 498 (635)
.+...+ .+|..+++ ++. .+..+|+|||.+
T Consensus 231 ------~s~~~~~~ll~~Il~~R~~---~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ------MSSWVRDEVLGVILQYRMQ---EELPTFFTSNFD 261 (306)
T ss_pred ------ccHHHHHHHHHHHHHHHHH---CCCeEEEECCCC
Confidence 233444 34555543 222 234689999974
No 250
>PRK06526 transposase; Provisional
Probab=98.70 E-value=2.7e-08 Score=101.48 Aligned_cols=98 Identities=23% Similarity=0.348 Sum_probs=58.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh--hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA--QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~--~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
.+++|+||||||||++|.+|+..+ |..+..++..++..... ...+.+...+. ....+.+|+|||++.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~---~l~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV---KLGRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH---HhccCCEEEEcccccCCC--
Confidence 479999999999999999998875 55555444443322110 01111222222 233467999999997632
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
+......|..++...... ..+|+|||.+
T Consensus 174 -----~~~~~~~L~~li~~r~~~---~s~IitSn~~ 201 (254)
T PRK06526 174 -----EPEAANLFFQLVSSRYER---ASLIVTSNKP 201 (254)
T ss_pred -----CHHHHHHHHHHHHHHHhc---CCEEEEcCCC
Confidence 234445555555443222 2488899965
No 251
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.67 E-value=5.3e-07 Score=98.86 Aligned_cols=248 Identities=17% Similarity=0.115 Sum_probs=146.0
Q ss_pred cCCccccChHHHHHHHHHHH-HHhcccccCCCCc---eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc------
Q 006700 356 NNGDIILHPSLQRRIQHLAK-ATANTKIHQAPFR---NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP------ 425 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~-~~~~~~~~~~p~~---~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~------ 425 (635)
-|-.|.|++.++.-|.-.+- -+.....++.+.+ ||+|.|.|||||+-+.++.+..+...++.- +....
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts--GkaSSaAGLTa 420 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS--GKASSAAGLTA 420 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec--CcccccccceE
Confidence 46778899988887643221 1111111223333 899999999999999999999886554321 11111
Q ss_pred -chhh--HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC---------CCCCCEEEEE
Q 006700 426 -LGAQ--AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---------DQSRDIVLVL 493 (635)
Q Consensus 426 -~~~~--~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~---------~~~~~viiI~ 493 (635)
+..+ +.....+ ..|......+|..|||+|.|- ...+...+.++-+..- ..+.+..||+
T Consensus 421 aVvkD~esgdf~iE--AGALmLADnGICCIDEFDKMd--------~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 421 AVVKDEESGDFTIE--AGALMLADNGICCIDEFDKMD--------VKDQVAIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred EEEecCCCCceeee--cCcEEEccCceEEechhcccC--------hHhHHHHHHHHHhheehheecceEEeecchhhhhh
Confidence 1000 0000000 001122336799999999882 1245555555544421 1334566888
Q ss_pred EeCCCC-------------CCcHHHHccccce-EecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchh-hhhhh---hh
Q 006700 494 ATNRPG-------------DLDSAITDRIDEV-IEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWG-HLFKK---QQ 555 (635)
Q Consensus 494 ttN~~~-------------~l~~~l~~R~d~~-i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~-~~~~~---~~ 555 (635)
++|+.. .++++++||||.. |-++.|++..=..|-++.++.+..-.........|. ..+.. .-
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA 570 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA 570 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH
Confidence 888653 4789999999965 566899988888888888876543111111100111 11110 01
Q ss_pred hhhhccCCCHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 556 QKITIKDLSDNVIQEAARKT---------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 556 ~~~~~~~~~~~~l~~la~~t---------------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
..+. ..++.++-+.|.+.. .+.+.|+|..|+...++.|...-...+|.+++.++++-...
T Consensus 571 R~~~-P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 571 RNFK-PKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HhcC-ccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 1111 125555555554432 25678999999999999998876678999999999887654
No 252
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.67 E-value=5.2e-09 Score=111.06 Aligned_cols=243 Identities=18% Similarity=0.166 Sum_probs=128.8
Q ss_pred CccccChHHHHHHHH-HHHHHhcccc---cCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC-----ccc-ch
Q 006700 358 GDIILHPSLQRRIQH-LAKATANTKI---HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-----VAP-LG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~-l~~~~~~~~~---~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~-----~~~-~~ 427 (635)
-.++|++.++..+.- ++........ ..+..-|+||.|.||||||.+.+.+++.....+ +++|.. +.. +.
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 568888888887632 2211111100 012234899999999999999998876554333 222211 111 11
Q ss_pred hh--HHH-HH-HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----C------CCCCEEEEE
Q 006700 428 AQ--AVT-KI-HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----D------QSRDIVLVL 493 (635)
Q Consensus 428 ~~--~~~-~l-~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~------~~~~viiI~ 493 (635)
.+ ..+ .+ .+.+-. ..++|++|||+|.+- ...+..|...+..-. . .+.++.|++
T Consensus 103 ~d~~~~~~~leaGalvl----ad~GiccIDe~dk~~---------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVL----ADGGICCIDEFDKMK---------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCGGTSSECEEE-HHHH----CTTSEEEECTTTT-----------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred cccccceeEEeCCchhc----ccCceeeeccccccc---------chHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 00 000 00 112222 236899999999872 334445555443311 1 234678999
Q ss_pred EeCCCC-------------CCcHHHHccccceEec-CCCCHHHHHHHHHHHHHhhcCCCC-----CC----CCccchh-h
Q 006700 494 ATNRPG-------------DLDSAITDRIDEVIEF-PLPREEERFKLLKLYLKKYLCSDE-----GD----SSSLKWG-H 549 (635)
Q Consensus 494 ttN~~~-------------~l~~~l~~R~d~~i~~-~~p~~~er~~Il~~~l~~~~~~~~-----~~----~~~~~~~-~ 549 (635)
++|+.. .+++.+++|||.++.+ +.|+.+.-..|..+.++.+..... .. ..+...+ .
T Consensus 170 a~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 249 (331)
T PF00493_consen 170 AANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRK 249 (331)
T ss_dssp EE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHH
T ss_pred HHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHH
Confidence 999654 4778999999988665 777777667777777776643210 00 0111111 1
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 550 LFKKQQQKITIKDLSDNVIQEAARKTE-------------GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~la~~t~-------------G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
++.--+..+. ..+++++...|...+- ..+.|.|..|+...++.|...-...++.+|+..++.-+.
T Consensus 250 yI~yar~~~~-P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 250 YIAYARQNIH-PVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHhhcc-cccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 2211121222 2488888888876532 346678889999999999998889999999999987654
No 253
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.67 E-value=6.4e-07 Score=90.65 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=84.2
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeec-----cCCCcccch
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMM-----TGGDVAPLG 427 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l-----~~~~~~~~~ 427 (635)
..+.||.-+++.+-..+....+...+..| -.+-|||+|||||.++++.||+.+ ..+|+.. .++.-..+
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i- 159 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI- 159 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-
Confidence 45789999999988877776665554444 356699999999999999999987 2333322 11111111
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----CCCCCCEEEEEEeCCCC
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GDQSRDIVLVLATNRPG 499 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----~~~~~~viiI~ttN~~~ 499 (635)
..-...+...+......-+.+|+++||+|.| .....++|..||+.. +-++.+.++|+-||...
T Consensus 160 e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm---------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 160 EDYKEELKNRVRGTVQACQRSLFIFDEVDKL---------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEechhhhc---------CHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 1111122222222112223579999999988 466778888888743 24677899999998643
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.64 E-value=6.5e-09 Score=100.42 Aligned_cols=110 Identities=27% Similarity=0.369 Sum_probs=54.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh--hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA--QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~--~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 461 (635)
..|++|+||||||||++|.+++..+ |.++..++..++..... .........+.... ...+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK---RVDLLILDDLGYEP-- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---TSSCEEEETCTSS---
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc---cccEecccccceee--
Confidence 3579999999999999999999876 66776666555432100 00111222333322 25699999997532
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----------CCcHHHHccc
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG----------DLDSAITDRI 509 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~----------~l~~~l~~R~ 509 (635)
.+......|..++..-... -.+|+|||..- .+..++++|+
T Consensus 122 -----~~~~~~~~l~~ii~~R~~~---~~tIiTSN~~~~~l~~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 122 -----LSEWEAELLFEIIDERYER---KPTIITSNLSPSELEEVLGDRALAEAILDRL 171 (178)
T ss_dssp -------HHHHHCTHHHHHHHHHT----EEEEEESS-HHHHHT---------------
T ss_pred -----ecccccccchhhhhHhhcc---cCeEeeCCCchhhHhhccccccccccccccc
Confidence 1233333444444332221 25777999641 2345666665
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.64 E-value=5e-07 Score=90.74 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=84.9
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 437 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~ 437 (635)
..+|.-|-..+....+..++... .+-.++||+|||||.+++.||+.+|.+++.++|++-.+. ..+..+
T Consensus 10 ~rlv~Tplt~r~~~~l~~al~~~-------~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~-----~~l~ri 77 (231)
T PF12774_consen 10 PRLVITPLTDRCFLTLTQALSLN-------LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY-----QSLSRI 77 (231)
T ss_dssp ------HHHHHHHHHHHHHHCTT-------TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H-----HHHHHH
T ss_pred CCceechHHHHHHHHHHHHhccC-------CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH-----HHHHHH
Confidence 45667777777777666655322 236789999999999999999999999999999874432 344555
Q ss_pred HHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----CC-------------CCCCEEEEEEeCCC--
Q 006700 438 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----GD-------------QSRDIVLVLATNRP-- 498 (635)
Q Consensus 438 f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----~~-------------~~~~viiI~ttN~~-- 498 (635)
|..+... |+.++|||++.+ +.....++...+..+ .. ...++-+++|.|..
T Consensus 78 l~G~~~~--GaW~cfdefnrl---------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~ 146 (231)
T PF12774_consen 78 LKGLAQS--GAWLCFDEFNRL---------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA 146 (231)
T ss_dssp HHHHHHH--T-EEEEETCCCS---------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC
T ss_pred HHHHhhc--Cchhhhhhhhhh---------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC
Confidence 5554443 689999999987 333333333333221 11 12345677777743
Q ss_pred --CCCcHHHHccccceEecCCCCHHHHHHH
Q 006700 499 --GDLDSAITDRIDEVIEFPLPREEERFKL 526 (635)
Q Consensus 499 --~~l~~~l~~R~d~~i~~~~p~~~er~~I 526 (635)
..+|+.++.-| ..|.+..||.....++
T Consensus 147 gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 147 GRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp CC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred CcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 47888888888 8999999997754443
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.2e-07 Score=96.85 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=59.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHHH--HHHHHHHHHhhcCCcEEEEecCchhhhhh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVT--KIHEIFDWAKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~~--~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 461 (635)
..+++|+||||||||+||-+|++.+ |.++..++.+++..-...... .....+.. ......||+|||+....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~--~l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR--ELKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH--HhhcCCEEEEecccCcc--
Confidence 3579999999999999999999987 666777766655431111111 11111111 13346799999998752
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
.+......+..++...-.... . |+|||.+
T Consensus 181 -----~~~~~~~~~~q~I~~r~~~~~--~-~~tsN~~ 209 (254)
T COG1484 181 -----FSQEEADLLFQLISRRYESRS--L-IITSNLS 209 (254)
T ss_pred -----CCHHHHHHHHHHHHHHHhhcc--c-eeecCCC
Confidence 233344444444433322222 2 8999975
No 257
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.63 E-value=7.1e-07 Score=105.25 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=115.5
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chh----h
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA----Q 429 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~----~ 429 (635)
-+..|..|-+.+.+.+++++......+ +||.||+.+|||+.+..+|+..|+.|++++...-.. +.| +
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~~fP------~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd 937 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLSNFP------LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD 937 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhcCCc------EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec
Confidence 356788888888888887776655443 999999999999999999999999999998765432 111 1
Q ss_pred HHHH---HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEEEEEe
Q 006700 430 AVTK---IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVLVLAT 495 (635)
Q Consensus 430 ~~~~---l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~viiI~tt 495 (635)
..+. -.+++-.|.+ +|..|+|||+... ......+||.||....+ ++.++++++|-
T Consensus 938 d~G~lsFkEGvLVeAlR--~GyWIVLDELNLA---------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ 1006 (4600)
T COG5271 938 DDGSLSFKEGVLVEALR--RGYWIVLDELNLA---------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ 1006 (4600)
T ss_pred CCCceeeehhHHHHHHh--cCcEEEeeccccC---------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec
Confidence 1111 1234444433 4678999999854 35677788888755321 45688999999
Q ss_pred CCCC------CCcHHHHccccceEecCCCCHHHHHHHHHHHH
Q 006700 496 NRPG------DLDSAITDRIDEVIEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 496 N~~~------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l 531 (635)
|+|. .|..+|++|| ..++|..-+.+|...|++..+
T Consensus 1007 Nppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1007 NPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred CCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhccC
Confidence 9876 4789999999 888998888888888887543
No 258
>PRK06921 hypothetical protein; Provisional
Probab=98.62 E-value=2.7e-07 Score=94.90 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=60.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchh-hhhh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA-FLCE 461 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~-l~~~ 461 (635)
..+++|+||||||||+|+.++++.+ |..+++++..++..........+...+. ......||+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~---~~~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLN---RMKKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHH---HhcCCCEEEEeccccccCCC
Confidence 4579999999999999999999986 4455555443322111111111112222 223467999999943 1111
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-CC---CcHHHHcc
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-GD---LDSAITDR 508 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-~~---l~~~l~~R 508 (635)
...+......|..++...-.... .+|+|||.+ .. +++.+.+|
T Consensus 194 ---e~~t~~~~~~lf~iin~R~~~~k--~tIitsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 194 ---PRATEWQIEQMYSVLNYRYLNHK--PILISSELTIDELLDIDEALGSR 239 (266)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHhhhhhHHHHH
Confidence 11123334444444443322222 368899853 22 34556555
No 259
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.56 E-value=5.1e-07 Score=90.62 Aligned_cols=195 Identities=19% Similarity=0.267 Sum_probs=117.3
Q ss_pred EEEecCCCCChHHHHHHHHH------HhCCCeeeccCCCcccc--hhhHHHHHHHHHHHHh-------hcCCcEEEEecC
Q 006700 390 MLFYGPPGTGKTMVAREIAR------KSGLDYAMMTGGDVAPL--GAQAVTKIHEIFDWAK-------KSKKGLLLFIDE 454 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~------~l~~~~~~l~~~~~~~~--~~~~~~~l~~~f~~a~-------~~~~~~vL~iDE 454 (635)
+||.||+|.||+.+|+.|.. .+..+|+.++|..+... .....+++.+.|..+. ++..|++|||||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 99999999999999998854 34678999999887542 2233455666665544 344678999999
Q ss_pred chhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCC-------CCCCcHHHHccccceEecCCCC
Q 006700 455 ADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNR-------PGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 455 id~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~-------~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
|..+. ...+..|...+..-. .-..++.+|+-|-. ...+...+.-|+ ..+.|.+|+
T Consensus 291 igelg---------adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpg 360 (531)
T COG4650 291 IGELG---------ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPG 360 (531)
T ss_pred hhhcC---------ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccc
Confidence 98873 233444444433311 12345666765532 235667777788 788999999
Q ss_pred HHHHHHHHH----HHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC-HHHHHHHHHHc---CCCCHHHHHHHHHHHH
Q 006700 520 EEERFKLLK----LYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS-DNVIQEAARKT---EGFSGREIAKLMASVQ 591 (635)
Q Consensus 520 ~~er~~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~la~~t---~G~sgrdI~~L~~~~q 591 (635)
..+|.+=+. +-+.++.. ..+-.+. +. +.--.+|+-.+ ..|+| +.+.|..++-
T Consensus 361 l~qr~ediepnldyelerha~------------------~~g~~vr-fntearra~l~fa~spqa~w~g-nfrelsasvt 420 (531)
T COG4650 361 LRQRQEDIEPNLDYELERHAS------------------LTGDSVR-FNTEARRAWLAFATSPQATWRG-NFRELSASVT 420 (531)
T ss_pred cccCccccCCCccHHHHHHHH------------------hhCceee-eehHHHHHHHHhccCcchhhcc-cHHHHhHHHH
Confidence 887765322 22222211 0000011 12 22222232111 23444 7777777777
Q ss_pred HHHHcCCCCccCHHHHHHHHHHH
Q 006700 592 AAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 592 ~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
..+.-.+.+.||.+.++.-+...
T Consensus 421 rmatlad~grit~~~ve~ei~rl 443 (531)
T COG4650 421 RMATLADSGRITLDVVEDEINRL 443 (531)
T ss_pred HHHHHhcCCceeHHHHHHHHHHH
Confidence 77766677889988887766543
No 260
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.5e-06 Score=86.21 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCceEEEecCCC-CChHHHHHHHHHHhCC---------CeeeccCCCc-----ccchhhHHHHHHHHHHHHhhcCCcEEE
Q 006700 386 PFRNMLFYGPPG-TGKTMVAREIARKSGL---------DYAMMTGGDV-----APLGAQAVTKIHEIFDWAKKSKKGLLL 450 (635)
Q Consensus 386 p~~~iLL~GppG-tGKT~lA~~lA~~l~~---------~~~~l~~~~~-----~~~~~~~~~~l~~~f~~a~~~~~~~vL 450 (635)
-.+.+||.|..+ +||..++..++..+.+ ++..+..... ..++.+....+...+......+++.|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345699999998 9999999988887633 2333321110 123334444444444333344567899
Q ss_pred EecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHH
Q 006700 451 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLY 530 (635)
Q Consensus 451 ~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~ 530 (635)
+||++|.|. ....|.||..+++++.++++|++|..+..+.|.++||| ..+.|+.|....-.+++..+
T Consensus 94 II~~ae~mt------------~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYSQF 160 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHHHh
Confidence 999999873 46789999999999999999999999999999999999 99999999998777777766
Q ss_pred HHhh
Q 006700 531 LKKY 534 (635)
Q Consensus 531 l~~~ 534 (635)
+...
T Consensus 161 ~~p~ 164 (263)
T PRK06581 161 IQPI 164 (263)
T ss_pred cccc
Confidence 5443
No 261
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=6.2e-07 Score=84.60 Aligned_cols=140 Identities=19% Similarity=0.349 Sum_probs=78.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC--------Ce-eeccCCCcccch-------------hhHHHHHHHHHHHHhhcCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL--------DY-AMMTGGDVAPLG-------------AQAVTKIHEIFDWAKKSKK 446 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~--------~~-~~l~~~~~~~~~-------------~~~~~~l~~~f~~a~~~~~ 446 (635)
-++|+|+||+|||++++.++..+.. ++ +.+.+....... ......+...+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999987621 11 122222221100 0111111222223334455
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHcccc--ceEecCCCCHHHHH
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRID--EVIEFPLPREEERF 524 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d--~~i~~~~p~~~er~ 524 (635)
..+|+||.+|.+...... .........+..++.. ....++.+|+||.... ... +.+.+. ..+.+++.+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRA-FPD-LRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCCh-HHH-HHHhcCCCcEEEECCCCHHHHH
Confidence 689999999988642211 0011122333344432 1345677777776432 211 333332 56899999999999
Q ss_pred HHHHHHHHh
Q 006700 525 KLLKLYLKK 533 (635)
Q Consensus 525 ~Il~~~l~~ 533 (635)
++++.++..
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988753
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=2.6e-07 Score=83.97 Aligned_cols=96 Identities=26% Similarity=0.367 Sum_probs=55.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh--------CCCeeeccCCCccc----------------chhhHHHHH-HHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS--------GLDYAMMTGGDVAP----------------LGAQAVTKI-HEIFDWAK 442 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l--------~~~~~~l~~~~~~~----------------~~~~~~~~l-~~~f~~a~ 442 (635)
+.++|+||||+|||++++.++..+ ..+++.+++..... ........+ ..+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 369999999999999999999987 55666665433221 000112222 22333333
Q ss_pred hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006700 443 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 497 (635)
Q Consensus 443 ~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~ 497 (635)
... ..+|+|||+|.+. ....++.+....+ ..++.||++.+.
T Consensus 85 ~~~-~~~lviDe~~~l~-----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRR-VVLLVIDEADHLF-----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCT-EEEEEEETTHHHH-----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcC-CeEEEEeChHhcC-----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 333 3699999999873 1445555554444 455666665543
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=98.49 E-value=2.9e-07 Score=94.35 Aligned_cols=99 Identities=22% Similarity=0.373 Sum_probs=57.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-chh-hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGA-QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-~~~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
.+++|+||||||||+++.+|+..+ |..+..+++.++.. +.. ...+.+...+... ...+.+|+|||++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~--~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG--VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH--hcCCCEEEEcccccCCC--
Confidence 469999999999999999997764 55666655544331 111 1111233334332 23457999999986522
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
+......|..++...... . .+|+|||.+
T Consensus 179 -----~~~~~~~lf~li~~r~~~-~--s~iiTsn~~ 206 (259)
T PRK09183 179 -----SQEEANLFFQVIAKRYEK-G--SMILTSNLP 206 (259)
T ss_pred -----ChHHHHHHHHHHHHHHhc-C--cEEEecCCC
Confidence 223333444444332222 2 378899964
No 264
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.48 E-value=3.2e-07 Score=106.95 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=114.4
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-------chh-hHHHHHHHHH---HHH-hhcCCcEEEEecCchh
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-------LGA-QAVTKIHEIF---DWA-KKSKKGLLLFIDEADA 457 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-------~~~-~~~~~l~~~f---~~a-~~~~~~~vL~iDEid~ 457 (635)
+|++||||+|||+.++.+|..+|..++.++.++... ++. .....+...+ ... .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 699999999999999999999999999999887542 000 0111222222 000 0112345899999998
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCC
Q 006700 458 FLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 537 (635)
Q Consensus 458 l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~ 537 (635)
++. ..+..+..+...+. ....-||++||........-++|-+..++|+.|+...+..-+..++.....
T Consensus 440 ~~~---------~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~- 507 (871)
T KOG1968|consen 440 MFG---------EDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGI- 507 (871)
T ss_pred ccc---------hhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccce-
Confidence 753 22333444433333 233468999998887777677776689999999999888877777654332
Q ss_pred CCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006700 538 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593 (635)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a 593 (635)
.+++..++.+...+.| ||++.+..++..
T Consensus 508 ------------------------ki~~~~l~~~s~~~~~----DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 508 ------------------------KISDDVLEEISKLSGG----DIRQIIMQLQFW 535 (871)
T ss_pred ------------------------ecCcHHHHHHHHhccc----CHHHHHHHHhhh
Confidence 2788899999988755 999988877766
No 265
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.41 E-value=1e-06 Score=94.16 Aligned_cols=245 Identities=14% Similarity=0.124 Sum_probs=136.1
Q ss_pred CccccChHHHHHHHHHHHH-HhcccccCCCC---ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKA-TANTKIHQAPF---RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~-~~~~~~~~~p~---~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
-.+.|++++++.|.-++-- .......+... -||+|.|.||+.|+-|.+.+.+......+... -.-+.+|-.. .-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG-rGSSGVGLTA-AV 419 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG-RGSSGVGLTA-AV 419 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC-CCCCccccch-hh
Confidence 4578999999998655432 11111112111 27999999999999999999987655444332 1111111000 00
Q ss_pred HHHHHH-------HHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----------CCCCCCEEEEEEeC
Q 006700 434 IHEIFD-------WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----------GDQSRDIVLVLATN 496 (635)
Q Consensus 434 l~~~f~-------~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----------~~~~~~viiI~ttN 496 (635)
+++-+. .|.-...++|..|||+|.|. +..+..+..++..- ...+.++.|+++.|
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~---------e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMD---------ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhh---------hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 000000 00012235788999999984 33444444443321 12344567888888
Q ss_pred CCC-------------CCcHHHHccccceEec-CCCCHHHHHHHHHHHHHhhcCC-CCCCCCccchhhhhhh----hhhh
Q 006700 497 RPG-------------DLDSAITDRIDEVIEF-PLPREEERFKLLKLYLKKYLCS-DEGDSSSLKWGHLFKK----QQQK 557 (635)
Q Consensus 497 ~~~-------------~l~~~l~~R~d~~i~~-~~p~~~er~~Il~~~l~~~~~~-~~~~~~~~~~~~~~~~----~~~~ 557 (635)
+.. .|+.+++||||..+-+ +.|+.+.-..+.++..--+... .+...+..-..+++.. -+..
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhc
Confidence 542 5889999999976544 7788776666666644332221 2222111000111111 1111
Q ss_pred hhccCCCHHHHHHHHHHc------------C-CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 558 ITIKDLSDNVIQEAARKT------------E-GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 558 ~~~~~~~~~~l~~la~~t------------~-G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
-+ .+++...++|.... . --|+|.|-.++....+.+.-+-...+..+|+++++.-.-
T Consensus 571 ~P--~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 571 NP--VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred CC--CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 11 24555545544221 1 126788888888777777777778899999999987653
No 266
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.40 E-value=7.3e-07 Score=105.12 Aligned_cols=135 Identities=20% Similarity=0.314 Sum_probs=93.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----chhhHHHHHHHHHHH-----HhhcCCcEEEEecCchhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----LGAQAVTKIHEIFDW-----AKKSKKGLLLFIDEADAF 458 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----~~~~~~~~l~~~f~~-----a~~~~~~~vL~iDEid~l 458 (635)
+++||-|.||+|||+++.+||+..|..+++++.++-.. +|.+....-.+-|.| ....+.|..++|||+...
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 34999999999999999999999999999988665322 111111111111222 113345789999999854
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC------CCcHHHHccccceEecCCCCHH
Q 006700 459 LCERNSIHMSEAQRSALNALLFRTGD-----------QSRDIVLVLATNRPG------DLDSAITDRIDEVIEFPLPREE 521 (635)
Q Consensus 459 ~~~r~~~~~~~~~~~~L~~ll~~~~~-----------~~~~viiI~ttN~~~------~l~~~l~~R~d~~i~~~~p~~~ 521 (635)
+.....-||..|..-.+ -+.++.|++|-|+.+ .|+..|++|| .+|+++.++.+
T Consensus 1624 ---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~d 1693 (4600)
T COG5271 1624 ---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTD 1693 (4600)
T ss_pred ---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccc
Confidence 34445556666655321 346788888888643 5999999999 89999999888
Q ss_pred HHHHHHHHHHH
Q 006700 522 ERFKLLKLYLK 532 (635)
Q Consensus 522 er~~Il~~~l~ 532 (635)
+...|....+.
T Consensus 1694 Di~~Ia~~~yp 1704 (4600)
T COG5271 1694 DITHIANKMYP 1704 (4600)
T ss_pred hHHHHHHhhCC
Confidence 88877766554
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=3e-06 Score=79.38 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=60.2
Q ss_pred EEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-----------------------c-hhhHHHHHHHHHHHHh
Q 006700 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-----------------------L-GAQAVTKIHEIFDWAK 442 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-----------------------~-~~~~~~~l~~~f~~a~ 442 (635)
++|+||||+|||+++..++... +.+++.++...... . .......+........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 34444443322110 0 0001111111222223
Q ss_pred hcCCcEEEEecCchhhhhhccc--ccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 443 KSKKGLLLFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 443 ~~~~~~vL~iDEid~l~~~r~~--~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
....+.+|+|||+..+...... ..........+..++...... ++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG--GVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CceEEEEEecC
Confidence 3445789999999988754321 122334456666666665433 55566666543
No 268
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.38 E-value=3.9e-06 Score=87.09 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=69.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHH--hCCCe---eeccCCCccc-----------ch---------hhHHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARK--SGLDY---AMMTGGDVAP-----------LG---------AQAVTKIHEIFD 439 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~--l~~~~---~~l~~~~~~~-----------~~---------~~~~~~l~~~f~ 439 (635)
...+.+.|+|++|+|||++|..+++. ....| +.++.+.... ++ .+.......+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34457999999999999999999987 43332 2222211111 00 011111222222
Q ss_pred HHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCC
Q 006700 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 440 ~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
.. .. .+++|+||+++.. . .+..+...+.....+..||+||....... .+... +..+.++..+
T Consensus 97 ~L-~~-~~~LlVlDdv~~~-----------~---~~~~l~~~~~~~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~L~ 158 (287)
T PF00931_consen 97 LL-KD-KRCLLVLDDVWDE-----------E---DLEELREPLPSFSSGSKILVTTRDRSVAG-SLGGT-DKVIELEPLS 158 (287)
T ss_dssp HH-CC-TSEEEEEEEE-SH-----------H---HH-------HCHHSS-EEEEEESCGGGGT-THHSC-EEEEECSS--
T ss_pred hh-cc-ccceeeeeeeccc-----------c---ccccccccccccccccccccccccccccc-ccccc-cccccccccc
Confidence 22 22 3789999999853 1 23223222222233567888887643211 11111 4789999999
Q ss_pred HHHHHHHHHHHHHhh
Q 006700 520 EEERFKLLKLYLKKY 534 (635)
Q Consensus 520 ~~er~~Il~~~l~~~ 534 (635)
.++-..++..+....
T Consensus 159 ~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 159 EEEALELFKKRAGRK 173 (287)
T ss_dssp HHHHHHHHHHHHTSH
T ss_pred ccccccccccccccc
Confidence 999999998886543
No 269
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.31 E-value=8.5e-06 Score=87.41 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=98.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc--ccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV--APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI 465 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~--~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~ 465 (635)
-|+++.||||||||+++.+|+... ....|..+ ..+..+... ........+.+|+|||+..+.-..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~----a~~sG~f~T~a~Lf~~L~~------~~lg~v~~~DlLI~DEvgylp~~~--- 276 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYV----ILISGGTITVAKLFYNIST------RQIGLVGRWDVVAFDEVATLKFAK--- 276 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHH----HHHcCCcCcHHHHHHHHHH------HHHhhhccCCEEEEEcCCCCcCCc---
Confidence 469999999999999999987662 11122111 111111111 112223346899999998753211
Q ss_pred cCcHHHHHHHHHHHHHhC------CCCCCEEEEEEeCCCCC-------------C-----cHHHHccccc---eEecCCC
Q 006700 466 HMSEAQRSALNALLFRTG------DQSRDIVLVLATNRPGD-------------L-----DSAITDRIDE---VIEFPLP 518 (635)
Q Consensus 466 ~~~~~~~~~L~~ll~~~~------~~~~~viiI~ttN~~~~-------------l-----~~~l~~R~d~---~i~~~~p 518 (635)
.+.....+...+..-. ....+.-+|+..|.... | |.+|++||.- -+++|..
T Consensus 277 --~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~yiPGWeipk~ 354 (449)
T TIGR02688 277 --PKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGYLPGWEIPKI 354 (449)
T ss_pred --hHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHHhhhccCCCCcCccC
Confidence 1223334433332211 11223445554453221 1 4577777742 2234444
Q ss_pred CHHHHHH---HHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 006700 519 REEERFK---LLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY 595 (635)
Q Consensus 519 ~~~er~~---Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~ 595 (635)
..+-... ++--|+..... -+ + +.. ++ +.++.......++++||...+...+.....
T Consensus 355 ~~e~~t~~yGl~~DylsE~l~-------------~l---R-~~~---~~-~~~~~~~~l~~~~~~RD~~aV~kt~SgllK 413 (449)
T TIGR02688 355 RKEMFSNGYGFVVDYFAEALR-------------EL---R-ERE---YA-DIVDRHFSLSPNLNTRDVIAVKKTFSGLMK 413 (449)
T ss_pred CHHHcccCCcchHHHHHHHHH-------------HH---H-hhH---HH-HhhhhheecCCCcchhhHHHHHHHHHHHHH
Confidence 3322111 22222222111 01 0 000 11 234444455678899998887776665543
Q ss_pred c-CCCCccCHHHHHHHHHHHHhh
Q 006700 596 A-RPDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 596 ~-s~~~~lt~~~i~~~l~~~~~~ 617 (635)
- -++..+|.++++.+++..+..
T Consensus 414 LL~P~~~~~~ee~~~~l~~Ale~ 436 (449)
T TIGR02688 414 ILFPHGTITKEEFTECLEPALEG 436 (449)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHH
Confidence 3 355779999999999777654
No 270
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.30 E-value=2.4e-06 Score=91.47 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=26.7
Q ss_pred cCCCCceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 383 ~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
...+++|++||||+|+|||+|.-.+...+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3457899999999999999999999887743
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=1.1e-05 Score=74.86 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++++||||+||||++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 369999999999999999999887
No 272
>PHA00729 NTP-binding motif containing protein
Probab=98.23 E-value=2e-06 Score=85.44 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
.+++|+|+||||||++|.+|+..++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999988633
No 273
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.15 E-value=1.7e-05 Score=85.17 Aligned_cols=251 Identities=17% Similarity=0.176 Sum_probs=132.8
Q ss_pred CccccChHHHHHHHHHHHHHhcccccC----CCCceEEEecCCCCChHHHHHHHHHHhCCCeeec-cCCCcccc----hh
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQ----APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM-TGGDVAPL----GA 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~----~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l-~~~~~~~~----~~ 428 (635)
-.+.|+.++++++.=++-.-.....+. +.--|+||.|.|||.|+-|.+.+-+-...-++.- .|+.-..+ ..
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 356788888888754432111111111 0112799999999999999998877553222211 11111110 00
Q ss_pred hHHHHHHHHH--HHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH----------hCCCCCCEEEEEEeC
Q 006700 429 QAVTKIHEIF--DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR----------TGDQSRDIVLVLATN 496 (635)
Q Consensus 429 ~~~~~l~~~f--~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~----------~~~~~~~viiI~ttN 496 (635)
+..+. +++ ..|.-...|+|+.|||+|.|- +..+-.+..-+.. +...+.++.|+++.|
T Consensus 411 D~~tR--eFylEGGAMVLADgGVvCIDEFDKMr---------e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 411 DPSTR--EFYLEGGAMVLADGGVVCIDEFDKMR---------EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred cCCcc--eEEEecceEEEecCCEEEeehhhccC---------chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 00000 000 001122347899999999883 2222222222211 112345567888888
Q ss_pred CCC-------------CCcHHHHccccceEecCCCCHHHH-HHHHHHHHHhhcCC----CCC---CCC--ccchhhhhhh
Q 006700 497 RPG-------------DLDSAITDRIDEVIEFPLPREEER-FKLLKLYLKKYLCS----DEG---DSS--SLKWGHLFKK 553 (635)
Q Consensus 497 ~~~-------------~l~~~l~~R~d~~i~~~~p~~~er-~~Il~~~l~~~~~~----~~~---~~~--~~~~~~~~~~ 553 (635)
+.- ++-+.+++|||.++.+..--.+++ ..|.++.++-+... ... ..+ ...|+..+-.
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~ 559 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQ 559 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHH
Confidence 541 356999999998877765444433 33445544443320 000 111 1122111111
Q ss_pred hhhhhhccCCCHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 554 QQQKITIKDLSDNVIQEAARKT-------------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 554 ~~~~~~~~~~~~~~l~~la~~t-------------------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
......-..++.++-+.|..+. --.+.|+|..++...+..+...-....|.+++++++.-|
T Consensus 560 YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF 639 (729)
T KOG0481|consen 560 YCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLF 639 (729)
T ss_pred HHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHH
Confidence 1111111236666666665432 123668888888888888888777888999999999988
Q ss_pred Hhhhh
Q 006700 615 VEEHH 619 (635)
Q Consensus 615 ~~~~~ 619 (635)
..+.+
T Consensus 640 ~vSTm 644 (729)
T KOG0481|consen 640 QVSTM 644 (729)
T ss_pred hHhhH
Confidence 76543
No 274
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.09 E-value=2.2e-05 Score=86.16 Aligned_cols=145 Identities=23% Similarity=0.217 Sum_probs=71.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc-CCCcccchhhHHHH--HHHHHHH--HhhcCCcEEEEecCchhhhhh-c
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT-GGDVAPLGAQAVTK--IHEIFDW--AKKSKKGLLLFIDEADAFLCE-R 462 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~-~~~~~~~~~~~~~~--l~~~f~~--a~~~~~~~vL~iDEid~l~~~-r 462 (635)
|+||+|.|||||+-+.+.+++.....++... |+.-..+....... .+++.-. |.-....+|.+|||+|.|... |
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDR 563 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR 563 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccccc
Confidence 8999999999999999999988765554332 11111110000000 0000000 111223568899999998532 1
Q ss_pred ccccCcHHHHHHHHHHHH--HhCCCCCCEEEEEEeCCCC-------------CCcHHHHccccceEec-CC--CCHHHHH
Q 006700 463 NSIHMSEAQRSALNALLF--RTGDQSRDIVLVLATNRPG-------------DLDSAITDRIDEVIEF-PL--PREEERF 524 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~--~~~~~~~~viiI~ttN~~~-------------~l~~~l~~R~d~~i~~-~~--p~~~er~ 524 (635)
.+.+ +++-+.--.+-. ........+.+|+|+|+.. .+...+++|||....+ +. |-.+|+.
T Consensus 564 tSIH--EAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~l 641 (854)
T KOG0477|consen 564 TSIH--EAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKL 641 (854)
T ss_pred chHH--HHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHH
Confidence 1111 111110000000 0001234567999999632 4667899999854443 22 3333332
Q ss_pred H--HHHHHHHhhc
Q 006700 525 K--LLKLYLKKYL 535 (635)
Q Consensus 525 ~--Il~~~l~~~~ 535 (635)
. ++..+...+.
T Consensus 642 A~fVV~Sh~r~hp 654 (854)
T KOG0477|consen 642 AKFVVGSHVRHHP 654 (854)
T ss_pred HHHHHHhHhhcCC
Confidence 2 4555554443
No 275
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.08 E-value=1.1e-05 Score=71.12 Aligned_cols=23 Identities=43% Similarity=0.891 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHHHhC
Q 006700 390 MLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
|+|+||||+|||++++.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=8.7e-05 Score=91.69 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=87.5
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe---eeccCCCccc----c
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---AMMTGGDVAP----L 426 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~---~~l~~~~~~~----~ 426 (635)
...++++||-+...+.+..++.. .....+.+-|+||+|+||||+|++++..+...| +.+....+.. .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhc
Confidence 34578899988887777765531 122345689999999999999999988774432 1111110000 0
Q ss_pred h------hh-----HHHHHHHH-------------HHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh
Q 006700 427 G------AQ-----AVTKIHEI-------------FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT 482 (635)
Q Consensus 427 ~------~~-----~~~~l~~~-------------f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~ 482 (635)
. .. ....+..+ +.. .-..+..+|+||+++.. ..+..+....
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~-~L~~krvLLVLDdv~~~--------------~~l~~L~~~~ 318 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEE-RLKHRKVLIFIDDLDDQ--------------DVLDALAGQT 318 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHH-HHhCCeEEEEEeCCCCH--------------HHHHHHHhhC
Confidence 0 00 00000110 111 11234578999999742 2344443322
Q ss_pred CCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHH
Q 006700 483 GDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLK 532 (635)
Q Consensus 483 ~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~ 532 (635)
.....+..||+||.....+. ...++.++.++.|+.++-.+|+..+.-
T Consensus 319 ~~~~~GsrIIiTTrd~~vl~---~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 319 QWFGSGSRIIVITKDKHFLR---AHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred ccCCCCcEEEEEeCcHHHHH---hcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 22223456777776432211 124667899999999998888887753
No 277
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.05 E-value=0.00023 Score=73.21 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=95.0
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 437 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~ 437 (635)
.++|.-+++.+.+..+.+.+.. |.+|+||.|.+|+||+++++..|...+..++.+....- +-..+-...+..+
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~------~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~-y~~~~f~~dLk~~ 80 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQ------PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG-YSIKDFKEDLKKA 80 (268)
T ss_dssp ------HHHHHHHHHHHHHHCS------TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT-THHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcC------CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC-cCHHHHHHHHHHH
Confidence 6788888998888888777654 33579999999999999999988888888888765431 1122334567777
Q ss_pred HHHHhhcCCcEEEEecCchh----h-------hhhccc-ccCc-HHHHH--------------------HHHHHHHHhCC
Q 006700 438 FDWAKKSKKGLLLFIDEADA----F-------LCERNS-IHMS-EAQRS--------------------ALNALLFRTGD 484 (635)
Q Consensus 438 f~~a~~~~~~~vL~iDEid~----l-------~~~r~~-~~~~-~~~~~--------------------~L~~ll~~~~~ 484 (635)
+..+.-.+.+.+++|+|-+- + +....- +-.+ +.... .++.|+..+
T Consensus 81 ~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rv-- 158 (268)
T PF12780_consen 81 LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERV-- 158 (268)
T ss_dssp HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHH--
T ss_pred HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHH--
Confidence 77777677778888776532 2 111110 0000 11111 122222222
Q ss_pred CCCCEEEEEEeCC-CCCCc------HHHHccccceEecCCCCHHHHHHHHHHHHHhhc
Q 006700 485 QSRDIVLVLATNR-PGDLD------SAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535 (635)
Q Consensus 485 ~~~~viiI~ttN~-~~~l~------~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~ 535 (635)
..+.-||++.++ .+.+. |++.+++ .+.-|...+.+....+-..++....
T Consensus 159 -r~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~~ 214 (268)
T PF12780_consen 159 -RKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDIE 214 (268)
T ss_dssp -CCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHHH
T ss_pred -HhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhhc
Confidence 244555555443 33343 5666666 6667777777888888888876653
No 278
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.03 E-value=0.0004 Score=73.47 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=54.9
Q ss_pred cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---------------CCcHHHHc-
Q 006700 444 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---------------DLDSAITD- 507 (635)
Q Consensus 444 ~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---------------~l~~~l~~- 507 (635)
...+.||||||+|++.+ +....+|..+-..++ ..++++|++++... .....++.
T Consensus 170 ~~~~iViiIDdLDR~~~--------~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSP--------EEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred CCceEEEEEcchhcCCc--------HHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 34568999999999842 334444444332232 37888998887321 23345555
Q ss_pred cccceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 508 RIDEVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 508 R~d~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
-|+..+.+|.|+..+...++...+.....
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 46778899999999888888888766554
No 279
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.02 E-value=4.5e-06 Score=80.37 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=28.7
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++|-++..+.|...+. . .....+++++|+|++|||||++++.+...+
T Consensus 2 fvgR~~e~~~l~~~l~-~----~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A----AQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G----TSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H----HHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677777777766554 1 123334689999999999999999887776
No 280
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=83.13 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=25.3
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..++++++|||+-|+|||+|...+...+.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 34778999999999999999999888763
No 281
>PHA02774 E1; Provisional
Probab=97.98 E-value=3.9e-05 Score=85.21 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=60.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee-ccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM-MTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI 465 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~-l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~ 465 (635)
-++++|+||||||||++|-+|++.++..++. +|...-.. +..+ ....|++|||+-.-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~Fw------------Lqpl---~d~ki~vlDD~t~~~------ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW------------LQPL---ADAKIALLDDATHPC------ 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccc------------cchh---ccCCEEEEecCcchH------
Confidence 3589999999999999999999998654433 44311000 1111 113589999992110
Q ss_pred cCcHHHHHHHHHHHHHh----CCC------CCCEEEEEEeCCCCCCc---HHHHccccceEecCCC
Q 006700 466 HMSEAQRSALNALLFRT----GDQ------SRDIVLVLATNRPGDLD---SAITDRIDEVIEFPLP 518 (635)
Q Consensus 466 ~~~~~~~~~L~~ll~~~----~~~------~~~viiI~ttN~~~~l~---~~l~~R~d~~i~~~~p 518 (635)
.......|..+|... +.. -....+|+|||..-.-+ ..|.+|+ .++.|+.|
T Consensus 493 --w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~ 555 (613)
T PHA02774 493 --WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNP 555 (613)
T ss_pred --HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCC
Confidence 012222333333221 000 01235888999544334 3455688 77777654
No 282
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.98 E-value=0.00018 Score=86.76 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=98.8
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccC--CCccc----------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG--GDVAP---------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~--~~~~~---------- 425 (635)
.++|--+.+...+... ...+-++|+||+|.|||+++..++...+ ++..++. .+-.+
T Consensus 14 ~~~~~R~rl~~~l~~~-----------~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRERLLAKLSGA-----------NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcchHHHHHHhcc-----------cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHH
Confidence 5667777766666421 1234599999999999999999887766 5544433 22110
Q ss_pred ch----h---------------hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCC
Q 006700 426 LG----A---------------QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 486 (635)
Q Consensus 426 ~~----~---------------~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~ 486 (635)
+. . .....+..++........+.+|+|||++.+- +......+..++... +
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~---~ 150 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ---P 150 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC---C
Confidence 00 0 0001122233333333567999999999762 233444566665443 5
Q ss_pred CCEEEEEEeCCCCCCcHHHHccccceEecC----CCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 487 RDIVLVLATNRPGDLDSAITDRIDEVIEFP----LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 487 ~~viiI~ttN~~~~l~~~l~~R~d~~i~~~----~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
.++.+|++|.....++-.-+..-+..+.+. ..+.+|...++...+.. .
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~----------------------------~ 202 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS----------------------------P 202 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC----------------------------C
Confidence 566777777543223211111112334444 67888888777654321 1
Q ss_pred CCHHHHHHHHHHcCCCCH
Q 006700 563 LSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 563 ~~~~~l~~la~~t~G~sg 580 (635)
++++.+..|...|+||..
T Consensus 203 ~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 203 IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred CCHHHHHHHHHHhCChHH
Confidence 577788888888888664
No 283
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.97 E-value=4.8e-05 Score=68.40 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=41.7
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++||+-+.+.+...+........+..| -.+.|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 67899999999988777665544433333 356699999999999999999996
No 284
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=0.00014 Score=76.25 Aligned_cols=133 Identities=22% Similarity=0.262 Sum_probs=76.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---------------------chh--hHHHHHHHHHHH--
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---------------------LGA--QAVTKIHEIFDW-- 440 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---------------------~~~--~~~~~l~~~f~~-- 440 (635)
.|-+++|||-+|||||.+.+.+-+.++.+.+.+++-+... ..+ +....+...|..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 3446799999999999999999999988877665433111 011 111222223322
Q ss_pred -HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHc---cc-cceEec
Q 006700 441 -AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD---RI-DEVIEF 515 (635)
Q Consensus 441 -a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~---R~-d~~i~~ 515 (635)
+.+.....+|+||.+|.+- +++......+..+-..+..+ .+.||+..-... .-... -+ ..+++|
T Consensus 109 ~~t~~d~~~~liLDnad~lr------D~~a~ll~~l~~L~el~~~~--~i~iils~~~~e---~~y~~n~g~~~i~~l~f 177 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALR------DMDAILLQCLFRLYELLNEP--TIVIILSAPSCE---KQYLINTGTLEIVVLHF 177 (438)
T ss_pred HhhccCceEEEEEcCHHhhh------ccchHHHHHHHHHHHHhCCC--ceEEEEeccccH---HHhhcccCCCCceEEec
Confidence 2222346789999999983 22233333333333223322 444444433222 11221 12 267899
Q ss_pred CCCCHHHHHHHHHH
Q 006700 516 PLPREEERFKLLKL 529 (635)
Q Consensus 516 ~~p~~~er~~Il~~ 529 (635)
|.|+.++...|+.+
T Consensus 178 P~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 178 PQYSVEETQVILSR 191 (438)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999988765
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=97.95 E-value=3.6e-05 Score=73.66 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=66.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 468 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~ 468 (635)
.|+++||||+||||+|+.|++.++.+++.++.--- .++ ....++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~---------------------~~~-w~~~~~-------------- 46 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW---------------------KPN-WEGVPK-------------- 46 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc---------------------ccC-CcCCCH--------------
Confidence 59999999999999999999999999887643110 001 000000
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhc
Q 006700 469 EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535 (635)
Q Consensus 469 ~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~ 535 (635)
......+..++ . . . -+|+-.|.+..++. .+.++|.+|.++.|...-..+++...+....
T Consensus 47 ~~~~~~~~~~~---~-~-~--~wVidG~~~~~~~~-~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g 105 (167)
T PRK08118 47 EEQITVQNELV---K-E-D--EWIIDGNYGGTMDI-RLNAADTIIFLDIPRTICLYRAFKRRVQYRG 105 (167)
T ss_pred HHHHHHHHHHh---c-C-C--CEEEeCCcchHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHHHHcC
Confidence 11112222332 1 1 1 26667776665543 3457999999999998888888888886543
No 286
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.94 E-value=1.3e-05 Score=78.62 Aligned_cols=123 Identities=23% Similarity=0.308 Sum_probs=61.5
Q ss_pred EEEecCCCCChHHHHHHH-HH-Hh--CCCeee-ccCCCccc---chhhHHH-------------HHHHHHHHHhhcCCcE
Q 006700 390 MLFYGPPGTGKTMVAREI-AR-KS--GLDYAM-MTGGDVAP---LGAQAVT-------------KIHEIFDWAKKSKKGL 448 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~l-A~-~l--~~~~~~-l~~~~~~~---~~~~~~~-------------~l~~~f~~a~~~~~~~ 448 (635)
.|++|.||+|||+.|-.. .. .+ |.+++. ++|-++.. ....... .......|.. ...++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTNIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK-LPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE--TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-SGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-cCCCc
Confidence 689999999999877554 32 22 555443 22112111 1000000 0122333332 22589
Q ss_pred EEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCC
Q 006700 449 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 449 vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p 518 (635)
||+|||+..+++.+.... ......+ .++... ...++-||++|..+..+++.+++.++.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 999999999998876521 1122333 333222 3456789999999999999999988877776544
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.91 E-value=4.6e-05 Score=75.83 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=39.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC----------cccc-hhhHHHHHHHHHHHHh-hcCCcEEEEecCc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD----------VAPL-GAQAVTKIHEIFDWAK-KSKKGLLLFIDEA 455 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~----------~~~~-~~~~~~~l~~~f~~a~-~~~~~~vL~iDEi 455 (635)
..+||||+||+|||++|+.++.. ..++..+++. +... .......+.+.+.... ....+.+||||.+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 46999999999999999999732 1122222211 1110 0011122233332222 2345789999999
Q ss_pred hhhhh
Q 006700 456 DAFLC 460 (635)
Q Consensus 456 d~l~~ 460 (635)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 98865
No 288
>PHA02624 large T antigen; Provisional
Probab=97.88 E-value=3e-05 Score=86.38 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=66.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc----
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER---- 462 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r---- 462 (635)
-+.+||+||||||||+++.+|++.+|...+.++++.-. ++ |.. .-.....+++||++-.-.-..
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k---------s~--FwL-~pl~D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK---------LN--FEL-GCAIDQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch---------hH--HHh-hhhhhceEEEeeeccccccccccCC
Confidence 35799999999999999999999996666667654311 11 111 011113578889885221100
Q ss_pred ccccCc--HHHHHHHHHHH-HHhCCCCCC------EEEEEEeCCCCCCcHHHHccccceEecCC
Q 006700 463 NSIHMS--EAQRSALNALL-FRTGDQSRD------IVLVLATNRPGDLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 463 ~~~~~~--~~~~~~L~~ll-~~~~~~~~~------viiI~ttN~~~~l~~~l~~R~d~~i~~~~ 517 (635)
.+.+++ ...++.|+.-+ -.++..+.+ -.+|+|||. ..|+..+.-||..++.|..
T Consensus 499 ~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 499 SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 011222 23333332220 001111111 137778886 4678888889988888864
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.88 E-value=7.7e-05 Score=72.14 Aligned_cols=30 Identities=37% Similarity=0.431 Sum_probs=22.9
Q ss_pred EEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
+|++||||||||+++..++... |.++++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7999999999999999887654 44444443
No 290
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.00076 Score=71.82 Aligned_cols=167 Identities=20% Similarity=0.175 Sum_probs=93.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh--------h------------------------HHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA--------Q------------------------AVT 432 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~--------~------------------------~~~ 432 (635)
..+.|+||..+|||++...+.+.+ |...+.+++..+..... . ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 459999999999999999987766 55555555544322000 0 001
Q ss_pred HHHHHHHH--HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----CCCCEEEEEEeCCCCCCcHHH
Q 006700 433 KIHEIFDW--AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----QSRDIVLVLATNRPGDLDSAI 505 (635)
Q Consensus 433 ~l~~~f~~--a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----~~~~viiI~ttN~~~~l~~~l 505 (635)
.....|.. .....++.||+|||+|.++... ....+++..+-..... ...++.+|++......+....
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 12222322 2233568999999999986421 1122333333332221 223455666544222221111
Q ss_pred H-c--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 506 T-D--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 506 ~-~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
. + -+...+.++..+.+|...++..+- . .+++..++.|-..|.|.+. =
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~-------------------------~~~~~~~~~l~~~tgGhP~-L 235 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRYG----L-------------------------EFSQEQLEQLMDWTGGHPY-L 235 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhhh----c-------------------------cCCHHHHHHHHHHHCCCHH-H
Confidence 1 1 234678889999999888776652 1 1455568888888877544 4
Q ss_pred HHHHHHHH
Q 006700 583 IAKLMASV 590 (635)
Q Consensus 583 I~~L~~~~ 590 (635)
+..+|..+
T Consensus 236 v~~~~~~l 243 (331)
T PF14516_consen 236 VQKACYLL 243 (331)
T ss_pred HHHHHHHH
Confidence 55555433
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0001 Score=79.57 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=67.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC-------CCeeeccCCCcc--c---------------chhhHHHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDVA--P---------------LGAQAVTKIHEIFDWAK 442 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~-------~~~~~l~~~~~~--~---------------~~~~~~~~l~~~f~~a~ 442 (635)
++.++|+||+|+||||++..||..+. ..+..+++.... . ........+...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~--- 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT--- 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH---
Confidence 45799999999999999999997652 334333332210 0 00111222333332
Q ss_pred hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCCCcHHHHccc----cceEecCC
Q 006700 443 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGDLDSAITDRI----DEVIEFPL 517 (635)
Q Consensus 443 ~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-~~~l~~~l~~R~----d~~i~~~~ 517 (635)
....+.+||||.+..... ......-+..++..... ...+++|+.++. ...+. .+..+| ...+-|.-
T Consensus 251 ~~~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEEEEEe
Confidence 234578999999987531 12222334444444332 224566665543 34444 343443 13556666
Q ss_pred CCHHHHHH
Q 006700 518 PREEERFK 525 (635)
Q Consensus 518 p~~~er~~ 525 (635)
.|...+.-
T Consensus 322 lDet~~~G 329 (388)
T PRK12723 322 LDETTCVG 329 (388)
T ss_pred ccCCCcch
Confidence 66654444
No 292
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.82 E-value=0.00073 Score=74.06 Aligned_cols=245 Identities=17% Similarity=0.176 Sum_probs=134.4
Q ss_pred CccccChHHHHHHHHHHHHH-hcccccCCCC---ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchh-----
Q 006700 358 GDIILHPSLQRRIQHLAKAT-ANTKIHQAPF---RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA----- 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~-~~~~~~~~p~---~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~----- 428 (635)
-.+.|++.++++|.-++.-- ..-..++... -||||.|.|.|.|+-|.+.+.+.....+... |..-+.+|-
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT-GRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT-GRGSSGVGLTAAVT 379 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc-CCCCCCccceeEEe
Confidence 35689999999987654421 1111222222 2799999999999999999987543322221 111111110
Q ss_pred -hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----------CCCCCCEEEEEEeCC
Q 006700 429 -QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----------GDQSRDIVLVLATNR 497 (635)
Q Consensus 429 -~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----------~~~~~~viiI~ttN~ 497 (635)
+....-+.+=..|.-....+|++|||||.| +...+-.+..++..- ...+.++.||++.|+
T Consensus 380 tD~eTGERRLEAGAMVLADRGVVCIDEFDKM---------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLADRGVVCIDEFDKM---------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred eccccchhhhhcCceEEccCceEEehhcccc---------cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 101111111111212223469999999987 344555566555441 124567889999996
Q ss_pred CC-------------CCcHHHHccccceEe-cCCCCHHHHHHHHHHHHHhh--cCCC-----CCCCC----c--------
Q 006700 498 PG-------------DLDSAITDRIDEVIE-FPLPREEERFKLLKLYLKKY--LCSD-----EGDSS----S-------- 544 (635)
Q Consensus 498 ~~-------------~l~~~l~~R~d~~i~-~~~p~~~er~~Il~~~l~~~--~~~~-----~~~~~----~-------- 544 (635)
.. .|+..+++|||..+. ++.-+.+.=..|-.+.|.-+ .... +...+ +
T Consensus 451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~ 530 (818)
T KOG0479|consen 451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMED 530 (818)
T ss_pred cccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccc
Confidence 43 378999999986544 34444443333444444332 1100 00000 0
Q ss_pred -------cchhhhhhh---------------------hhhhhhccCCCHHHHHHHHHHcC---------------CCCHH
Q 006700 545 -------LKWGHLFKK---------------------QQQKITIKDLSDNVIQEAARKTE---------------GFSGR 581 (635)
Q Consensus 545 -------~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~la~~t~---------------G~sgr 581 (635)
..+..+++. .+.++. ..+++++...|+..+. ..+.|
T Consensus 531 ~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~-P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTAR 609 (818)
T KOG0479|consen 531 KKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIK-PKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITAR 609 (818)
T ss_pred cccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcC-ccccHHHHHHHHHHHhhhhccccccccccccCCcHH
Confidence 001111111 011121 3588899999986532 34678
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
.|..|+...-+.+..+-...++.+|.+.+++-
T Consensus 610 tLETlIRLaTAhAKaRlSk~V~~~DAe~A~~L 641 (818)
T KOG0479|consen 610 TLETLIRLATAHAKARLSKVVEKDDAEAAVNL 641 (818)
T ss_pred HHHHHHHHHHHHHHhhhcceeehhhHHHHHHH
Confidence 88999876666665555577888887777654
No 293
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.82 E-value=0.00014 Score=79.14 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=74.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 468 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~ 468 (635)
.++|+||.+|||||+++.+...+...++.++..++..........+.... ..... ....+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~-~~~~~-~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYI-ELKER-EKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHH-Hhhcc-CCceEEEecccCc----------
Confidence 69999999999999998888887555555655555443322222222222 22222 3468999999976
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCC---CCCCcHHHHccccceEecCCCCHHHHHHH
Q 006700 469 EAQRSALNALLFRTGDQSRDIVLVLATNR---PGDLDSAITDRIDEVIEFPLPREEERFKL 526 (635)
Q Consensus 469 ~~~~~~L~~ll~~~~~~~~~viiI~ttN~---~~~l~~~l~~R~d~~i~~~~p~~~er~~I 526 (635)
+.-...+..+.... ..+ ++|.++|. ...+.+.+..|. ..+.+.|.+..|...+
T Consensus 107 ~~W~~~lk~l~d~~---~~~-v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 107 PDWERALKYLYDRG---NLD-VLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred hhHHHHHHHHHccc---cce-EEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 34445555555222 112 34444443 234556666786 8888999999888653
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00029 Score=72.73 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=92.7
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHH-HH--HhCCCeeec--cCCCccc-------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-AR--KSGLDYAMM--TGGDVAP------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~l-A~--~l~~~~~~l--~~~~~~~------- 425 (635)
-.+.|...-.+.+..++....-.. -..++++.||.|+|||++.... +. ..|-+++.+ +|.-..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~g----EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHG----ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhc----CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHH
Confidence 445666666666766665544322 2247999999999999876543 33 455555443 3322110
Q ss_pred -------------chhhHHHHHHHHHHHHh---hcCCc-EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 006700 426 -------------LGAQAVTKIHEIFDWAK---KSKKG-LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 488 (635)
Q Consensus 426 -------------~~~~~~~~l~~~f~~a~---~~~~~-~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~ 488 (635)
..+.....+..++...+ ....+ .|.++||||.+.+. .-+..|..+++.......+
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h--------~rQtllYnlfDisqs~r~P 171 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH--------SRQTLLYNLFDISQSARAP 171 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc--------hhhHHHHHHHHHHhhcCCC
Confidence 00111112222222221 11122 45667899988642 2233455555555556678
Q ss_pred EEEEEEeCCCC---CCcHHHHccccce-Eec-CCCCHHHHHHHHHHHH
Q 006700 489 IVLVLATNRPG---DLDSAITDRIDEV-IEF-PLPREEERFKLLKLYL 531 (635)
Q Consensus 489 viiI~ttN~~~---~l~~~l~~R~d~~-i~~-~~p~~~er~~Il~~~l 531 (635)
++||+.|.+.+ .+...+.+||... |++ |..+..+..+|++..+
T Consensus 172 iciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 172 ICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 88888776554 5668889999865 554 4455788888888776
No 295
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00073 Score=71.54 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=71.5
Q ss_pred CcEEEEecCchhhhh----hccc-ccCcHHHHHHHHHHHHHhCC-CCCCEEEEEEe--CCCC--------------CCcH
Q 006700 446 KGLLLFIDEADAFLC----ERNS-IHMSEAQRSALNALLFRTGD-QSRDIVLVLAT--NRPG--------------DLDS 503 (635)
Q Consensus 446 ~~~vL~iDEid~l~~----~r~~-~~~~~~~~~~L~~ll~~~~~-~~~~viiI~tt--N~~~--------------~l~~ 503 (635)
-+.+|.||.+..++. ++.. ....+........+...+.. ...+++|.+++ ..+. .+++
T Consensus 315 ~kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~ 394 (461)
T KOG3928|consen 315 VKVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGE 394 (461)
T ss_pred ccEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCc
Confidence 345788999999987 3222 23334444556666666653 33344444444 1221 2334
Q ss_pred HHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
..++-++ ..|+++.++.+|-..++.+|++.... ..+ ..+++.+..+--.+ +.+|+
T Consensus 395 egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl------------------~kk----v~~Ee~~kql~fLS-ngNP~ 451 (461)
T KOG3928|consen 395 EGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWL------------------LKK----VPGEENIKQLYFLS-NGNPS 451 (461)
T ss_pred cchhhccCcCccccCCCCHHHHHHHHHHHHHhhHH------------------Hhh----cCcccchhhhhhhc-CCCHH
Confidence 4444222 56788999999999999999987654 001 12355666666666 55887
Q ss_pred HHHHHHH
Q 006700 582 EIAKLMA 588 (635)
Q Consensus 582 dI~~L~~ 588 (635)
.++.+|.
T Consensus 452 l~~~lca 458 (461)
T KOG3928|consen 452 LMERLCA 458 (461)
T ss_pred HHHHHHH
Confidence 7777764
No 296
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0002 Score=83.51 Aligned_cols=162 Identities=20% Similarity=0.302 Sum_probs=105.4
Q ss_pred CCccccC--hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc
Q 006700 357 NGDIILH--PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (635)
Q Consensus 357 ~~~vig~--~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~ 424 (635)
++-|+|. +++.+.+.-+.+... +|-+|.|.||+|||.++.-+++.. +..++.++.+.+.
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk---------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTK---------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCC---------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 4667775 555555554433211 468999999999999999999876 2234444433222
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC---
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP--- 498 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~--- 498 (635)
..-++....+..+...+....++.||||||++.+.......+ .......|..+| . .+.+.+|+||...
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~~d~~nlLkp~L---~--rg~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-AIDAANLLKPLL---A--RGGLWCIGATTLETYR 329 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-HHHHHHhhHHHH---h--cCCeEEEecccHHHHH
Confidence 244567778888887777677789999999999986554421 112223333333 2 2338888876522
Q ss_pred --CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhh
Q 006700 499 --GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 534 (635)
Q Consensus 499 --~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~ 534 (635)
-.-+|++-+|| ..+.++.|+.++...||...-..+
T Consensus 330 k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~~ 366 (898)
T KOG1051|consen 330 KCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSERY 366 (898)
T ss_pred HHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhhh
Confidence 24578999999 677889999887677777665553
No 297
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.79 E-value=2.6e-05 Score=76.67 Aligned_cols=96 Identities=25% Similarity=0.288 Sum_probs=48.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--chh---hHHHHHHHHHHHHhh--------cCCcEEEEe
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LGA---QAVTKIHEIFDWAKK--------SKKGLLLFI 452 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--~~~---~~~~~l~~~f~~a~~--------~~~~~vL~i 452 (635)
.++|.||||||||++++.+...+ |..++.+....-.. +.. .....++.++..... ..+..||||
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 48889999999999999987765 44444443322110 000 001112222221111 233579999
Q ss_pred cCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Q 006700 453 DEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN 496 (635)
Q Consensus 453 DEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN 496 (635)
||+..+. ...+..++........++++|+=.+
T Consensus 100 DEasmv~------------~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 100 DEASMVD------------SRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp SSGGG-B------------HHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred ecccccC------------HHHHHHHHHHHHhcCCEEEEECCcc
Confidence 9998762 2346666666655444455554433
No 298
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.2e-05 Score=70.40 Aligned_cols=29 Identities=38% Similarity=0.811 Sum_probs=26.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
|+|.|||||||||+|+.|++.+|.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 78999999999999999999998777654
No 299
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.72 E-value=0.00044 Score=82.30 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=101.9
Q ss_pred ceEEEecCCCCChHHH-HHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhh----------cCCcEEEEecCch
Q 006700 388 RNMLFYGPPGTGKTMV-AREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK----------SKKGLLLFIDEAD 456 (635)
Q Consensus 388 ~~iLL~GppGtGKT~l-A~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~----------~~~~~vL~iDEid 456 (635)
++++++||||+|||++ .-+|-..+-..++.+|-+.-.. ...-...++.-...... .-+..|||.|||+
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn 1573 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN 1573 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-CHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccC
Confidence 5799999999999985 3455555555555554322110 00011111111100000 1123689999998
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHhCC---------CCCCEEEEEEeCCCCCC-----cHHHHccccceEecCCCCHHH
Q 006700 457 AFLCERNSIHMSEAQRSALNALLFRTGD---------QSRDIVLVLATNRPGDL-----DSAITDRIDEVIEFPLPREEE 522 (635)
Q Consensus 457 ~l~~~r~~~~~~~~~~~~L~~ll~~~~~---------~~~~viiI~ttN~~~~l-----~~~l~~R~d~~i~~~~p~~~e 522 (635)
| +...... ++...-.+..++..-+- .-.+++++++||++.+. ...|++|- ..|+..+|....
T Consensus 1574 -L-p~~~~y~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ype~~S 1649 (3164)
T COG5245 1574 -L-PYGFEYY-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCYPELAS 1649 (3164)
T ss_pred -C-ccccccC-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecCcchhh
Confidence 3 3222111 22222233444444221 12468899999987654 35566554 788889999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCccchhhhhhhh-hhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q 006700 523 RFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ-QQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 597 (635)
Q Consensus 523 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s 597 (635)
...|...++......-+ .+.++.... .....+.....+....-...-.||+|||+-..+.++..++-..
T Consensus 1650 L~~Iyea~l~~s~l~~~------ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1650 LRNIYEAVLMGSYLCFD------EFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETR 1719 (3164)
T ss_pred HHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcC
Confidence 99999988765432000 000000000 0000000000111111111225899999999998888776553
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.72 E-value=0.0018 Score=68.18 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=74.0
Q ss_pred HHHHHHHHhhcC--CcEEEEecCchhhhhhccc-----ccCcHHHHHHHHHHHHHh--CCC-CCCEEE--EEEeC---CC
Q 006700 434 IHEIFDWAKKSK--KGLLLFIDEADAFLCERNS-----IHMSEAQRSALNALLFRT--GDQ-SRDIVL--VLATN---RP 498 (635)
Q Consensus 434 l~~~f~~a~~~~--~~~vL~iDEid~l~~~r~~-----~~~~~~~~~~L~~ll~~~--~~~-~~~vii--I~ttN---~~ 498 (635)
+..++....... .|.+|.||++..++....- .............|+..+ ... ....+| +.+|. .+
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 344444444333 4788999999999876321 123344555666666663 233 233333 33332 22
Q ss_pred C--CCcHHHHcccc---------------------ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhh
Q 006700 499 G--DLDSAITDRID---------------------EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 555 (635)
Q Consensus 499 ~--~l~~~l~~R~d---------------------~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 555 (635)
. .++.++..+-. ..|.++.++.+|...++.+|........
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~----------------- 284 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRS----------------- 284 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCcccc-----------------
Confidence 2 34444443221 2789999999999999999987654400
Q ss_pred hhhhccCCCHHHHHHHHHHcCCCCHHHHHH
Q 006700 556 QKITIKDLSDNVIQEAARKTEGFSGREIAK 585 (635)
Q Consensus 556 ~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 585 (635)
...+....+.+.-.+.| +++++.+
T Consensus 285 -----~~~~~~~~e~~~~~s~G-Np~el~k 308 (309)
T PF10236_consen 285 -----RVDEELVLEKLFLSSNG-NPRELEK 308 (309)
T ss_pred -----CCCCHHHHHHHHHhcCC-CHHHhcc
Confidence 01455566666655545 7777765
No 301
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=0.00016 Score=69.49 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=65.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 468 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~ 468 (635)
.++|+|+||+||||+|+.|+..++.+++.++.-.. . +.. .+.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~---------------------~-~~~---~~~~-----------~ 45 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF---------------------Q-PNW---QERD-----------D 45 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe---------------------c-ccc---ccCC-----------H
Confidence 48999999999999999999998888766532110 0 000 0110 0
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhh
Q 006700 469 EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 534 (635)
Q Consensus 469 ~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~ 534 (635)
......+..++ . . .. +|+-.|....+-+..+.++|.+|.++.|-.....++++..+...
T Consensus 46 ~~~~~~~~~~~---~-~-~~--wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~r 104 (171)
T PRK07261 46 DDMIADISNFL---L-K-HD--WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYR 104 (171)
T ss_pred HHHHHHHHHHH---h-C-CC--EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 11112222222 1 1 22 56666665544456667899999999999888888888877643
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.69 E-value=6.3e-05 Score=83.52 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC-CCeeeccC
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-LDYAMMTG 420 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-~~~~~l~~ 420 (635)
..|++++|.++++++|...+......... ..+.++|+||||+|||+|++.|++.+. .+++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~--~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEE--KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCC--CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 36789999999999988766544433322 224799999999999999999999873 45555544
No 303
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.68 E-value=0.00036 Score=66.87 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=61.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchh------------------hHHHHHHHHHHHHhhcCCcEEE
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA------------------QAVTKIHEIFDWAKKSKKGLLL 450 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~------------------~~~~~l~~~f~~a~~~~~~~vL 450 (635)
.+|+.||||+|||++|..++..++.+++++..+.+..... +....+..++... ...+.+|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~--~~~~~~V 80 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD--AAPGRCV 80 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh--cCCCCEE
Confidence 4899999999999999999999887776665544322110 0011233333221 2336689
Q ss_pred EecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006700 451 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR 497 (635)
Q Consensus 451 ~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~ 497 (635)
+||-+..+..+.-...........+..++..+...... +|+++|.
T Consensus 81 lID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~t--vVlVs~E 125 (170)
T PRK05800 81 LVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAK--IILVTNE 125 (170)
T ss_pred EehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCC--EEEEEcC
Confidence 99999988654321110022344556666666544443 4555664
No 304
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.63 E-value=8.9e-05 Score=91.51 Aligned_cols=152 Identities=25% Similarity=0.379 Sum_probs=102.3
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chh-------
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA------- 428 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~------- 428 (635)
.+|..+.+++.+..++......+.+ +||-||.|||||.+++.+|..+|..++.++...... +.+
T Consensus 418 ~~i~T~~vq~~la~~~~a~~~~~~p------illqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~ 491 (1856)
T KOG1808|consen 418 HYIITPRVQKNLADLARAISSGKFP------ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDN 491 (1856)
T ss_pred eeeccHHHHHHHHHHHHHHhcCCCC------eEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCC
Confidence 3778889999998888887766554 999999999999999999999999999887655332 111
Q ss_pred -hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----------CCCCCEEEEEEeC
Q 006700 429 -QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----------DQSRDIVLVLATN 496 (635)
Q Consensus 429 -~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----------~~~~~viiI~ttN 496 (635)
...-....++. ..+.|+.+||||++.. ..+...+|+.++..-. ....++++++|=|
T Consensus 492 g~l~freg~LV~---Alr~G~~~vlD~lnla---------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn 559 (1856)
T KOG1808|consen 492 GDLVFREGVLVQ---ALRNGDWIVLDELNLA---------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQN 559 (1856)
T ss_pred CCeeeehhHHHH---HHHhCCEEEecccccc---------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhcc
Confidence 00001111222 2234889999999865 3456667777776521 1234677888888
Q ss_pred CCCC------CcHHHHccccceEecCCCCHHHHHHHHHH
Q 006700 497 RPGD------LDSAITDRIDEVIEFPLPREEERFKLLKL 529 (635)
Q Consensus 497 ~~~~------l~~~l~~R~d~~i~~~~p~~~er~~Il~~ 529 (635)
.+.. +..+|++|| ..++|..-+.++...|+..
T Consensus 560 ~~~~y~grk~lsRa~~~rf-~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 560 PPGTYGGRKILSRALRNRF-IELHFDDIGEEELEEILEH 597 (1856)
T ss_pred Cccccchhhhhhhcccccc-hhhhhhhcCchhhhhhhcc
Confidence 7753 457778888 5555555555555555544
No 305
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=0.00035 Score=68.26 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=39.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC-C-------cc-cchhhH----HHHHHHHHHHHh-hcCCcEEEE
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG-D-------VA-PLGAQA----VTKIHEIFDWAK-KSKKGLLLF 451 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~-~-------~~-~~~~~~----~~~l~~~f~~a~-~~~~~~vL~ 451 (635)
-.|++||||+|||+++..++..+ |..++.+.+. + +. .++... ......++..+. ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 37899999999999998887765 4444444321 1 00 011100 112233333322 233467999
Q ss_pred ecCchhh
Q 006700 452 IDEADAF 458 (635)
Q Consensus 452 iDEid~l 458 (635)
|||++.|
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999754
No 306
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.58 E-value=0.00085 Score=69.07 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCCEEEEEEe--CCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCC
Q 006700 486 SRDIVLVLAT--NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 563 (635)
Q Consensus 486 ~~~viiI~tt--N~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (635)
.+.+++|++| |+.-.++++++||+ .++.|.+++.++...+++.-+..... -+ ...+ .+
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~--~~--------------~~~~---~i 65 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV--LA--------------KHKF---KI 65 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc--cC--------------CcCC---Cc
Confidence 5678888866 56668999999999 99999999999999999998875211 00 0111 38
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-CC--CccCHHHHHHHHHHHH
Q 006700 564 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PD--CVLDSQLFREVVEYKV 615 (635)
Q Consensus 564 ~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s-~~--~~lt~~~i~~~l~~~~ 615 (635)
+++++..|+..+.| |.+.+++.++.++... .. ..||.+++.+++....
T Consensus 66 ~~~al~~ia~~a~G----DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~ 116 (300)
T PRK14700 66 DDGLYNAMHNYNEG----DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETS 116 (300)
T ss_pred CHHHHHHHHHhcCC----HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHH
Confidence 99999999999888 9999999999976522 22 2499999999886553
No 307
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.58 E-value=5.6e-05 Score=72.33 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+++|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 308
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.58 E-value=0.00033 Score=73.89 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..||++++|||.-|||||+|...+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998876544
No 309
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00055 Score=66.18 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=22.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-++|+|+||+|||++|+.|++.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 389999999999999999999983
No 310
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.56 E-value=0.00067 Score=66.65 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=63.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccc-hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 466 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~-~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~ 466 (635)
..++|.|+-|+|||++.+.|+.. |+.-+ +... ..+....+.. .-|+.|||++.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~---~~~~~~kd~~~~l~~----------~~iveldEl~~~~------- 108 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDS---INDFDDKDFLEQLQG----------KWIVELDELDGLS------- 108 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCc---cccCCCcHHHHHHHH----------hHheeHHHHhhcc-------
Confidence 35789999999999999999655 21111 1111 1111111111 2489999999873
Q ss_pred CcHHHHHHHHHHHHHhC------------CCCCCEEEEEEeCCCCCCc-HHHHccccceEecCC
Q 006700 467 MSEAQRSALNALLFRTG------------DQSRDIVLVLATNRPGDLD-SAITDRIDEVIEFPL 517 (635)
Q Consensus 467 ~~~~~~~~L~~ll~~~~------------~~~~~viiI~ttN~~~~l~-~~l~~R~d~~i~~~~ 517 (635)
......|..++.... ..++.+++|+|||..+-|. +.=.+|| .+|.+..
T Consensus 109 --k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 109 --KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred --hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 334456666665532 1345688999999877554 3344588 6776665
No 311
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.55 E-value=0.00054 Score=64.67 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=67.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeee---ccCCC-cc------------------------cchhhHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAM---MTGGD-VA------------------------PLGAQAVTKIHEI 437 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~---l~~~~-~~------------------------~~~~~~~~~l~~~ 437 (635)
-+.+|+++|+|||++|-.+|-.. |..+.. +.+.. .+ .............
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 37889999999999999887654 444333 23320 00 0000111122233
Q ss_pred HHHH---hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEe
Q 006700 438 FDWA---KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIE 514 (635)
Q Consensus 438 f~~a---~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~ 514 (635)
+..+ .....+.+|+|||+...+.-. .-....++..+...+.+.-+|+|... .++.++.+.|.+-+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~g---------li~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD~VTE 151 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYG---------LLDVEEVVDLLKAKPEDLELVLTGRN---APKELIEAADLVTE 151 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCC---------CCCHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCceeee
Confidence 3333 235668999999998764211 01123344445556667789999876 57788887776655
Q ss_pred cC
Q 006700 515 FP 516 (635)
Q Consensus 515 ~~ 516 (635)
+.
T Consensus 152 m~ 153 (159)
T cd00561 152 MR 153 (159)
T ss_pred cc
Confidence 43
No 312
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.55 E-value=0.0005 Score=65.82 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=60.2
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccch------------------hhHHHHHHHHHHHHhhcCCcEEEE
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG------------------AQAVTKIHEIFDWAKKSKKGLLLF 451 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~------------------~~~~~~l~~~f~~a~~~~~~~vL~ 451 (635)
+|++|+||+|||++|..++...+.+.+++......+.. .+....+.+.+ .....+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l---~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSAL---KELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHH---HhcCCCCEEE
Confidence 78999999999999999998877666666433322111 01112333333 2222356899
Q ss_pred ecCchhhhhhcccccCc---HHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006700 452 IDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSRDIVLVLATNR 497 (635)
Q Consensus 452 iDEid~l~~~r~~~~~~---~~~~~~L~~ll~~~~~~~~~viiI~ttN~ 497 (635)
||-+..+..+--..... ......+..++..+..... -+|+++|.
T Consensus 79 IDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~--~~viVsnE 125 (169)
T cd00544 79 IDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPG--TLILVSNE 125 (169)
T ss_pred EEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCC--cEEEEECC
Confidence 99999887654322111 2234455666666654433 34555764
No 313
>PTZ00202 tuzin; Provisional
Probab=97.54 E-value=0.0039 Score=67.34 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccC
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~ 420 (635)
....+++|-+.-...|..++...... .++-++|+||+|||||++++.+...++.+.+.++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~-----~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTA-----HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCC-----CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 34578999999999988776642221 22468999999999999999999988866554443
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00022 Score=76.49 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...++|+||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 315
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.54 E-value=7.1e-05 Score=68.53 Aligned_cols=31 Identities=45% Similarity=0.836 Sum_probs=28.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
++||++|.|||||||++..||..+|.+|+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4799999999999999999999999998876
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.53 E-value=8.8e-05 Score=70.71 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=28.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
++..|+|+||||||||++++.||+.+|.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 345799999999999999999999999887743
No 317
>PRK13695 putative NTPase; Provisional
Probab=97.52 E-value=0.0011 Score=63.74 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++|+|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987765
No 318
>PRK08233 hypothetical protein; Provisional
Probab=97.52 E-value=0.00043 Score=66.55 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=22.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-|.|.|+||+||||+|+.|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478899999999999999999985
No 319
>PRK13949 shikimate kinase; Provisional
Probab=97.49 E-value=0.00037 Score=66.80 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=28.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
++|+|+||||+|||++++.||+.++.+++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999998887654
No 320
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.47 E-value=0.00072 Score=67.34 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=56.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHH-----hCCCee--------------eccCCC-cccchhhHHHHHHHHHHHHhhcCCc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK-----SGLDYA--------------MMTGGD-VAPLGAQAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~-----l~~~~~--------------~l~~~~-~~~~~~~~~~~l~~~f~~a~~~~~~ 447 (635)
+.++|+||.|+|||++.+.++.. .|..+. .+...+ +..........+..+.........+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 56999999999999999999832 333211 111111 1111111222333333333334457
Q ss_pred EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEEeCCCCCCc
Q 006700 448 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGDLD 502 (635)
Q Consensus 448 ~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~-~~~viiI~ttN~~~~l~ 502 (635)
.+++|||+..-.. .......+..++..+... .....+|++|...+.+.
T Consensus 110 slvllDE~~~gtd-------~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 110 SLVLIDEFGKGTD-------TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred cEEEeccccCCCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 8999999974221 112233444455444322 23346777887655443
No 321
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=0.0012 Score=67.23 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
..++|.||+|||||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988754
No 322
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.46 E-value=0.00057 Score=67.09 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=54.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc--cc-------------------chhhHHHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV--AP-------------------LGAQAVTKIHEIFDWAK 442 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~--~~-------------------~~~~~~~~l~~~f~~a~ 442 (635)
|+.++|.||+|+||||++-.||..+ +..+..+++... +. ...+....+...+....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999998888776 333333332211 11 00011222333344333
Q ss_pred hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 443 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 443 ~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
. +...+||||=...... .......+..++..+ .+..+.+|+.++..
T Consensus 81 ~-~~~D~vlIDT~Gr~~~-------d~~~~~el~~~~~~~--~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 81 K-KGYDLVLIDTAGRSPR-------DEELLEELKKLLEAL--NPDEVHLVLSATMG 126 (196)
T ss_dssp H-TTSSEEEEEE-SSSST-------HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG
T ss_pred h-cCCCEEEEecCCcchh-------hHHHHHHHHHHhhhc--CCccceEEEecccC
Confidence 2 2356888887754311 233344555555555 34457777766643
No 323
>PF13479 AAA_24: AAA domain
Probab=97.46 E-value=0.00053 Score=68.25 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=41.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCee-eccCCC--------cccchhhHHHHHHHHHHHHh-hcCCcEEEEecCchhh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYA-MMTGGD--------VAPLGAQAVTKIHEIFDWAK-KSKKGLLLFIDEADAF 458 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~-~l~~~~--------~~~~~~~~~~~l~~~f~~a~-~~~~~~vL~iDEid~l 458 (635)
.++||||||+|||++|..+ +.+++ .+..+. ...+...+-..+.+.+.++. ...++.+|+||-++.+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 5999999999999999888 33332 222221 11122234455666666542 3456889999988776
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00021 Score=68.95 Aligned_cols=27 Identities=44% Similarity=0.892 Sum_probs=23.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
.|+|.||||+||||+|+.|++.++.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 489999999999999999999965543
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.43 E-value=0.00073 Score=72.82 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=59.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------ch-------hhHHHHHHHHHHHHhhcCCcEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------LG-------AQAVTKIHEIFDWAKKSKKGLL 449 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--------~~-------~~~~~~l~~~f~~a~~~~~~~v 449 (635)
.-+||+|+||+|||+++..++..+ +.+++++++.+... ++ ......+..++..+... .+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~-~~~l 161 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL-KPDL 161 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc-CCcE
Confidence 468999999999999999998765 34566665543211 00 00112334455544433 4789
Q ss_pred EEecCchhhhhhccc--ccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe
Q 006700 450 LFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGDQSRDIVLVLAT 495 (635)
Q Consensus 450 L~iDEid~l~~~r~~--~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt 495 (635)
|+||++..+.....+ .+.....+..+..|....... ++.+|++.
T Consensus 162 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~--~itvilvg 207 (372)
T cd01121 162 VIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER--NIPIFIVG 207 (372)
T ss_pred EEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 999999988643211 111233444555555444433 34454443
No 326
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0022 Score=62.23 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=59.1
Q ss_pred EEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccc------------eEecC
Q 006700 449 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDE------------VIEFP 516 (635)
Q Consensus 449 vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~------------~i~~~ 516 (635)
.++||++|.+. ....|.||..+++++.+++||++|..+..+.|.++|||.. .+.|.
T Consensus 57 k~iI~~a~~l~------------~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~ 124 (206)
T PRK08485 57 KIIVIAAPSYG------------IEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLK 124 (206)
T ss_pred EEEEEchHhhC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccC
Confidence 45678999773 5678999999999999999999999999999999999942 36788
Q ss_pred CCCHHHHHHHHHH
Q 006700 517 LPREEERFKLLKL 529 (635)
Q Consensus 517 ~p~~~er~~Il~~ 529 (635)
..+..+....+..
T Consensus 125 ~l~~~~i~~~L~~ 137 (206)
T PRK08485 125 KLDLKDIYEFLKE 137 (206)
T ss_pred CCCHHHHHHHHHH
Confidence 8899988888877
No 327
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00074 Score=63.62 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=56.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCCCccc---------chh---hHHHHHHH-HHHHHhhcCCcEEEE
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAP---------LGA---QAVTKIHE-IFDWAKKSKKGLLLF 451 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~~~~~---------~~~---~~~~~l~~-~f~~a~~~~~~~vL~ 451 (635)
...+.|.||+|+|||++.+.|+..+... -+.+++.++.. ++. -+.+.... .+..+... .|.+++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~-~~~i~i 103 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLL-NPDLLL 103 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhc-CCCEEE
Confidence 3468999999999999999999876321 22333322211 000 01111111 12222223 367999
Q ss_pred ecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006700 452 IDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 499 (635)
Q Consensus 452 iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~ 499 (635)
+||... +++......+..++..+... +..+|++|+..+
T Consensus 104 lDEp~~--------~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~ 141 (157)
T cd00267 104 LDEPTS--------GLDPASRERLLELLRELAEE--GRTVIIVTHDPE 141 (157)
T ss_pred EeCCCc--------CCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 999974 23455566666666655333 245677776543
No 328
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.41 E-value=0.00053 Score=74.00 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC---CeeeccCCCccc--c-hhhHHHHHHH
Q 006700 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGGDVAP--L-GAQAVTKIHE 436 (635)
Q Consensus 363 ~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~---~~~~l~~~~~~~--~-~~~~~~~l~~ 436 (635)
.++....+..++..+.. ..+.++++.||.|||||++.++|...+.. .++.+-...++. + +| ..+|.
T Consensus 3 n~eQ~~~~~~v~~~~~~-----~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G---~T~hs 74 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-----EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGG---RTIHS 74 (364)
T ss_pred CHHHHHHHHHHHHHHHc-----cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCC---cchHH
Confidence 34555555555555443 23357999999999999999999888733 232221111111 1 11 12222
Q ss_pred HHHH------------------HhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------CCCCCEEEE
Q 006700 437 IFDW------------------AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------DQSRDIVLV 492 (635)
Q Consensus 437 ~f~~------------------a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------~~~~~viiI 492 (635)
.|.. ......-.+|+|||+-.+ +......++..|..+. ..++++.||
T Consensus 75 ~f~i~~~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~---------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vi 145 (364)
T PF05970_consen 75 FFGIPINNNEKSQCKISKNSRLRERLRKADVLIIDEISMV---------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVI 145 (364)
T ss_pred hcCccccccccccccccccchhhhhhhhheeeecccccch---------hHHHHHHHHHhhhhhhcccchhhhcCcceEE
Confidence 2221 111223468999999766 2444455555555442 246777888
Q ss_pred EEeC
Q 006700 493 LATN 496 (635)
Q Consensus 493 ~ttN 496 (635)
+...
T Consensus 146 l~GD 149 (364)
T PF05970_consen 146 LFGD 149 (364)
T ss_pred eehh
Confidence 7665
No 329
>PRK04040 adenylate kinase; Provisional
Probab=97.40 E-value=0.0014 Score=63.94 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh--CCCe
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS--GLDY 415 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l--~~~~ 415 (635)
+..++|+|+|||||||+++.|+..+ +..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 3468999999999999999999998 4444
No 330
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.0015 Score=66.25 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.3
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++++||+|||||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.40 E-value=0.0016 Score=61.16 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-.++|+||+||||++|.+.+|...
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 359999999999999999999865
No 332
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.39 E-value=0.0018 Score=65.26 Aligned_cols=129 Identities=13% Similarity=0.193 Sum_probs=74.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCe--eeccCCCccc-c---------h----hhHHH-HHHHHHH---HHhh-----
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDY--AMMTGGDVAP-L---------G----AQAVT-KIHEIFD---WAKK----- 443 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~--~~l~~~~~~~-~---------~----~~~~~-~l~~~f~---~a~~----- 443 (635)
.+++.|++|||||+++..|...+...| +.+.+..... + . .+... .+..... ....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~~ 94 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQK 94 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 699999999999999999988775433 1111111100 0 0 01101 1111111 1111
Q ss_pred -cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHH
Q 006700 444 -SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEE 522 (635)
Q Consensus 444 -~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~e 522 (635)
..+..+|+||++..- ..-...+..++. ....-++.+|+.+...-.+++.++.-++.++.++ .+..+
T Consensus 95 k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~--~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~d 161 (241)
T PF04665_consen 95 KNNPRFLIILDDLGDK----------KLKSKILRQFFN--NGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKRD 161 (241)
T ss_pred CCCCCeEEEEeCCCCc----------hhhhHHHHHHHh--cccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHHH
Confidence 133689999998531 111233444442 2244568899999988999999988888777776 46666
Q ss_pred HHHHHHHH
Q 006700 523 RFKLLKLY 530 (635)
Q Consensus 523 r~~Il~~~ 530 (635)
+..|++.+
T Consensus 162 l~~i~~~~ 169 (241)
T PF04665_consen 162 LENIYRNM 169 (241)
T ss_pred HHHHHHhc
Confidence 65555544
No 333
>PRK14531 adenylate kinase; Provisional
Probab=97.39 E-value=0.00094 Score=64.77 Aligned_cols=29 Identities=38% Similarity=0.684 Sum_probs=26.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.++|+||||+||||+++.||..+|.+++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 59999999999999999999999877654
No 334
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.39 E-value=0.001 Score=65.68 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=27.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD 422 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~ 422 (635)
.-++|+||||||||+++..++... |...+++++..
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 468899999999999999988654 55566666543
No 335
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.36 E-value=0.00091 Score=60.07 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 69999999999999988887765
No 336
>PRK13947 shikimate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=68.53 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=28.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
+|+|.|+||||||++++.||+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999987643
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=97.35 E-value=0.0022 Score=68.01 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=26.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
+..++|+||||+||||++..||..+ |..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4579999999999999999998776 444444443
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0014 Score=70.26 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++.++|.||+|+||||++..||..+ |..+..+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 4679999999999999999999876 334444443
No 339
>PRK00625 shikimate kinase; Provisional
Probab=97.33 E-value=0.00019 Score=69.06 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
+|+|+|+||+||||+++.||+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999987664
No 340
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.33 E-value=0.00062 Score=69.41 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=26.1
Q ss_pred EEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
|+|+|+||+||||+|+.|++.+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7899999999999999999987 455666554
No 341
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.33 E-value=0.0011 Score=70.10 Aligned_cols=107 Identities=20% Similarity=0.320 Sum_probs=58.8
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccc
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS 464 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~ 464 (635)
+.-..++|||||+||||+++-.|.+.++..++....+. +.. |..-.....|-+|||+-.
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~-ShF-------------WLqPL~d~Ki~llDDAT~------- 318 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK-SHF-------------WLQPLADAKIALLDDATY------- 318 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT-SCG-------------GGGGGCT-SSEEEEEE-H-------
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC-Ccc-------------cccchhcCcEEEEcCCcc-------
Confidence 33457899999999999999999999988776643221 000 111111235889999953
Q ss_pred ccCcHHHHHHHHHHHHH-hCCC-------CC------CEEEEEEeCCCC---CCcHHHHccccceEecCCC
Q 006700 465 IHMSEAQRSALNALLFR-TGDQ-------SR------DIVLVLATNRPG---DLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 465 ~~~~~~~~~~L~~ll~~-~~~~-------~~------~viiI~ttN~~~---~l~~~l~~R~d~~i~~~~p 518 (635)
..-..++..+.. ++-+ ++ --.+++|||..- .--.-+.||+ .+++|+.|
T Consensus 319 -----~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi-~~f~F~n~ 383 (432)
T PF00519_consen 319 -----PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRI-TCFEFPNP 383 (432)
T ss_dssp -----HHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTE-EEEE--S-
T ss_pred -----cHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheE-EEEEcCCc
Confidence 333444433322 2211 11 124778998532 2235677898 78888754
No 342
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.32 E-value=0.0018 Score=62.85 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=69.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeec---cCC---------------------C-cc---cchhhHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM---TGG---------------------D-VA---PLGAQAVTKIHE 436 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l---~~~---------------------~-~~---~~~~~~~~~l~~ 436 (635)
..+++||++|.|||++|-.++-.. |..+..+ -+. . +. ....+.......
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 469999999999999999887654 3222211 111 0 00 000112233344
Q ss_pred HHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceE
Q 006700 437 IFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 513 (635)
Q Consensus 437 ~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i 513 (635)
.|..+.. ...+.+|+|||+-..+.- .-. ....++..+...+.++-||+|... .++.++.+.|.+-
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~---gli------~~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ADlVT 170 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKY---GYL------DVEEVLEALNARPGMQHVVITGRG---APRELIEAADLVT 170 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHC---CCc------cHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCchhe
Confidence 4555443 567899999999866421 010 122344444556677889999875 5778888877665
Q ss_pred ecCC
Q 006700 514 EFPL 517 (635)
Q Consensus 514 ~~~~ 517 (635)
++..
T Consensus 171 Em~~ 174 (191)
T PRK05986 171 EMRP 174 (191)
T ss_pred eccc
Confidence 5543
No 343
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.32 E-value=0.0073 Score=64.06 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=108.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC------CCeeeccCCCcccchhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFL 459 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~------~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~ 459 (635)
.+||||+-.--....++.+.+.+. .++..++|.+. ..+..++..+.. .....+|+|++++.+.
T Consensus 3 ~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~--------~~~~~~~~~~~t~pff~~~rlVvv~~~~~~~ 74 (326)
T PRK07452 3 IYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA--------DQAIQALNEAMTPPFGSGGRLVWLKNSPLCQ 74 (326)
T ss_pred EEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc--------hHHHHHHHHhcCCCCCCCceEEEEeCchhhc
Confidence 589999988777777777766542 23444444332 123445554422 2345788999986542
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEE-eCCCC---CCcHHHHccccceEecCCC---CHHHHHHHHHHHHH
Q 006700 460 CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLA-TNRPG---DLDSAITDRIDEVIEFPLP---REEERFKLLKLYLK 532 (635)
Q Consensus 460 ~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~t-tN~~~---~l~~~l~~R~d~~i~~~~p---~~~er~~Il~~~l~ 532 (635)
. .+. ...+.|...+...+.+.++|++ ++.++ .+...+.. +..++.|..+ +.++...++...+.
T Consensus 75 ~------~~~---~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k-~~~~~~~~~~~~~~~~~l~~~i~~~~~ 144 (326)
T PRK07452 75 G------CSE---ELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQK-LAEEKEFSLIPPWDTEGLKQLVERTAQ 144 (326)
T ss_pred c------CCH---HHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHH-ceeEEEecCCCcccHHHHHHHHHHHHH
Confidence 1 112 2344455555554555666664 33322 12223333 3457777554 45667778888777
Q ss_pred hhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc--CCCCccCHHHHHHH
Q 006700 533 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA--RPDCVLDSQLFREV 610 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~--s~~~~lt~~~i~~~ 610 (635)
..+. .++++++..|+..+.| |+..+.+.++..+.. .++..||.++|..+
T Consensus 145 ~~g~-------------------------~i~~~a~~~L~~~~g~----dl~~l~~EleKL~ly~~~~~~~It~~~V~~~ 195 (326)
T PRK07452 145 ELGV-------------------------KLTPEAAELLAEAVGN----DSRRLYNELEKLALYAENSTKPISAEEVKAL 195 (326)
T ss_pred HcCC-------------------------CCCHHHHHHHHHHhCc----cHHHHHHHHHHHHHhccCCCCccCHHHHHHH
Confidence 6654 3899999999998865 777777777665443 34567999999998
Q ss_pred HHH
Q 006700 611 VEY 613 (635)
Q Consensus 611 l~~ 613 (635)
+..
T Consensus 196 v~~ 198 (326)
T PRK07452 196 VSN 198 (326)
T ss_pred hcc
Confidence 764
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.32 E-value=0.0048 Score=71.01 Aligned_cols=118 Identities=22% Similarity=0.366 Sum_probs=73.8
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh--CCCee--eccCCCccc--------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS--GLDYA--MMTGGDVAP-------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l--~~~~~--~l~~~~~~~-------- 425 (635)
...|.-+.+...|.. ...++-+||+-|.|.||||++-.++..+ +..+. .++.++-.+
T Consensus 19 ~~~v~R~rL~~~L~~-----------~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 19 DNYVVRPRLLDRLRR-----------ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred ccccccHHHHHHHhc-----------CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHH
Confidence 455555555555532 3445679999999999999999998633 22333 333222111
Q ss_pred ---------chhh------------HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC
Q 006700 426 ---------LGAQ------------AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484 (635)
Q Consensus 426 ---------~~~~------------~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~ 484 (635)
.+.+ ...-+..+|........|.+|||||.+.+. .+.....++.|++.
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~--- 156 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKH--- 156 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHh---
Confidence 1111 112345566666666678999999999873 34556677777654
Q ss_pred CCCCEEEEEEeCC
Q 006700 485 QSRDIVLVLATNR 497 (635)
Q Consensus 485 ~~~~viiI~ttN~ 497 (635)
.+.++.+|+||..
T Consensus 157 ~P~~l~lvv~SR~ 169 (894)
T COG2909 157 APENLTLVVTSRS 169 (894)
T ss_pred CCCCeEEEEEecc
Confidence 4678889998864
No 345
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.0013 Score=72.35 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=55.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCccc-----c------------hhhHHHHHHHHHHHHhhc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP-----L------------GAQAVTKIHEIFDWAKKS 444 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~-----~------------~~~~~~~l~~~f~~a~~~ 444 (635)
.+.++|.||+|+||||++..||..+ +..+..+++..... + .......+... ....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~---l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA---LEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHH---HHHh
Confidence 3579999999999999999887654 34455555433210 0 00111122222 2233
Q ss_pred CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
..+.+||||-..... ........|..++.... .+..+.+|++++..
T Consensus 298 ~~~DlVlIDt~G~~~-------~d~~~~~~L~~ll~~~~-~~~~~~LVl~a~~~ 343 (424)
T PRK05703 298 RDCDVILIDTAGRSQ-------RDKRLIEELKALIEFSG-EPIDVYLVLSATTK 343 (424)
T ss_pred CCCCEEEEeCCCCCC-------CCHHHHHHHHHHHhccC-CCCeEEEEEECCCC
Confidence 346789999886431 12333445555554221 33456777776654
No 346
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.00095 Score=65.64 Aligned_cols=25 Identities=48% Similarity=0.708 Sum_probs=22.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-|.|+.|||||||||+.+-||+.+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 3699999999999999999999873
No 347
>PRK14528 adenylate kinase; Provisional
Probab=97.31 E-value=0.0017 Score=63.23 Aligned_cols=31 Identities=29% Similarity=0.634 Sum_probs=27.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+.++|.||||+||||+++.|++.+|.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3599999999999999999999998776543
No 348
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.31 E-value=0.0015 Score=64.42 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||+|+||||+.+.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999853
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.30 E-value=0.0018 Score=61.55 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCcccch----------h---hHHHHH-HHHHHHHhhcCCcEE
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLG----------A---QAVTKI-HEIFDWAKKSKKGLL 449 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~~~~----------~---~~~~~l-~~~f~~a~~~~~~~v 449 (635)
+...+.|.||+|+|||||.+.|+..... --+.+++.++.... . -+.+.. +-.+..+.. ..|.|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~-~~p~i 103 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA-RNARL 103 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh-cCCCE
Confidence 3446899999999999999999976521 11222222221100 0 111111 112222323 34789
Q ss_pred EEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 450 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 450 L~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
|++||-.. +.+...+..+..++..+... +..+|++|...
T Consensus 104 lllDEP~~--------~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 142 (163)
T cd03216 104 LILDEPTA--------ALTPAEVERLFKVIRRLRAQ--GVAVIFISHRL 142 (163)
T ss_pred EEEECCCc--------CCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 99999864 33456666776777665322 34566666553
No 350
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.29 E-value=0.019 Score=64.06 Aligned_cols=140 Identities=19% Similarity=0.325 Sum_probs=96.0
Q ss_pred HHHHHHhhcCC--cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceE
Q 006700 436 EIFDWAKKSKK--GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 513 (635)
Q Consensus 436 ~~f~~a~~~~~--~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i 513 (635)
..+.+...... ++|++|.|++.++. +....+.|..+...... ..+.+||++.+ -.+++.+.+-+ .++
T Consensus 69 ~al~~i~~~~~~~~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~-~~~~~i~~~~~--~~~p~el~~~~-~~~ 137 (489)
T CHL00195 69 QALEFIEKLTPETPALFLLKDFNRFLN-------DISISRKLRNLSRILKT-QPKTIIIIASE--LNIPKELKDLI-TVL 137 (489)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhc-------chHHHHHHHHHHHHHHh-CCCEEEEEcCC--CCCCHHHHhce-eEE
Confidence 34444444433 67999999999973 23345555555554443 34455555553 35677776655 888
Q ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006700 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593 (635)
Q Consensus 514 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a 593 (635)
.||+|+.+|+..++..+...... .+++..++.++..+.|+|..+++.++..+.
T Consensus 138 ~~~lP~~~ei~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~gls~~~~~~~~~~~~-- 190 (489)
T CHL00195 138 EFPLPTESEIKKELTRLIKSLNI-------------------------KIDSELLENLTRACQGLSLERIRRVLSKII-- 190 (489)
T ss_pred eecCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Confidence 99999999999999777643221 278889999999999999999999887421
Q ss_pred HHcCCCCccCHHHHHHHHHHHHh
Q 006700 594 VYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 594 a~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+ ..+.++.+++..+++.+..
T Consensus 191 ~---~~~~~~~~~~~~i~~~k~q 210 (489)
T CHL00195 191 A---TYKTIDENSIPLILEEKKQ 210 (489)
T ss_pred H---HcCCCChhhHHHHHHHHHH
Confidence 1 2345788887777776554
No 351
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.29 E-value=0.032 Score=62.42 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Q 006700 444 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN 496 (635)
Q Consensus 444 ~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN 496 (635)
...|+||+|||++.= ..+-+.|..|+..+.....+.-++++|-
T Consensus 376 LasYSViiiDEAHER----------TL~TDILfgLvKDIar~RpdLKllIsSA 418 (902)
T KOG0923|consen 376 LASYSVIIVDEAHER----------TLHTDILFGLVKDIARFRPDLKLLISSA 418 (902)
T ss_pred ccceeEEEeehhhhh----------hhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence 445899999999842 3445677777777765555555555443
No 352
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.29 E-value=0.0026 Score=64.12 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||||||||+++..++..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999997655443
No 353
>PRK05973 replicative DNA helicase; Provisional
Probab=97.29 E-value=0.0014 Score=66.13 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=24.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
..+||.|+||+|||+++-.++... |.++++++
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999887654 55554444
No 354
>PRK03839 putative kinase; Provisional
Probab=97.28 E-value=0.00022 Score=68.81 Aligned_cols=30 Identities=37% Similarity=0.648 Sum_probs=27.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.|+||+||||+++.||+.++.+|+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999999888764
No 355
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.28 E-value=0.0022 Score=70.99 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=59.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------chh-------hHHHHHHHHHHHHhhcCCcEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------LGA-------QAVTKIHEIFDWAKKSKKGLL 449 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--------~~~-------~~~~~l~~~f~~a~~~~~~~v 449 (635)
..+||+||||+|||+|+..++... +..++++++.+... ++. .....+..++...... .+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~~l 159 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE-KPDL 159 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh-CCCE
Confidence 468899999999999999998765 55666666543221 000 0112234444444433 4689
Q ss_pred EEecCchhhhhhccc--ccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe
Q 006700 450 LFIDEADAFLCERNS--IHMSEAQRSALNALLFRTGDQSRDIVLVLAT 495 (635)
Q Consensus 450 L~iDEid~l~~~r~~--~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt 495 (635)
|+||.+..+....-. .+.....+..+..|....... ++.+|+++
T Consensus 160 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~--~itvilv~ 205 (446)
T PRK11823 160 VVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQR--GIAVFLVG 205 (446)
T ss_pred EEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEe
Confidence 999999988653211 111223445555555444433 34444443
No 356
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.27 E-value=0.005 Score=61.22 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=54.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh-----------------------CCCeeeccCCCcccchhhHHHHHHHHHHHHhhc-
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS-----------------------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKS- 444 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l-----------------------~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~- 444 (635)
+|||.|++|+|||+++..|...- |..+..++.+.+.............+.......
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 59999999999999999986432 112233333333332222233334444433322
Q ss_pred -CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-CCCCEEEEEEeC
Q 006700 445 -KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-QSRDIVLVLATN 496 (635)
Q Consensus 445 -~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-~~~~viiI~ttN 496 (635)
++..|||+=.++.| +......+..+...++. ...+++||+|-.
T Consensus 82 ~g~ha~llVi~~~r~---------t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF---------TEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp T-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred CCCeEEEEEEecCcc---------hHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 23356666444443 46677788888888774 345667776643
No 357
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.00017 Score=66.48 Aligned_cols=26 Identities=35% Similarity=0.828 Sum_probs=23.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
|+|+|||||||||+|+.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 79999999999999999999988433
No 358
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.26 E-value=0.00073 Score=70.26 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh----C-CCeeeccCC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS----G-LDYAMMTGG 421 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l----~-~~~~~l~~~ 421 (635)
+..++|+||+|+||||++..||..+ | ..+..+++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4579999999999999999998866 3 455556553
No 359
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.26 E-value=0.00026 Score=66.17 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=27.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+|+|+||||+|||++++.|+..+|.+++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 489999999999999999999999887754
No 360
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.25 E-value=0.0013 Score=62.90 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=33.3
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCC
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p 518 (635)
..+|+|||++.+... .....+..++..+ .....+++++++.+...+......+...+.+...
T Consensus 130 ~~~iIiDE~h~~~~~--------~~~~~~~~~~~~~--~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 130 VDLVILDEAHRLLDG--------GFGDQLEKLLKLL--PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCEEEEECHHHHhcC--------CcHHHHHHHHHhC--CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 358999999988531 1223444444444 2334456666666555554444444444555443
No 361
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0022 Score=68.62 Aligned_cols=108 Identities=15% Similarity=0.261 Sum_probs=59.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC------eeeccCCC---------------ccc-chhhHHHHHH---HHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD------YAMMTGGD---------------VAP-LGAQAVTKIH---EIFDWAK 442 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~------~~~l~~~~---------------~~~-~~~~~~~~l~---~~f~~a~ 442 (635)
.-.+|+||||||||+|++.|++..... ++.+.+.. +.. .......++. .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999877431 22222221 111 1111111221 2233332
Q ss_pred ---hcCCcEEEEecCchhhhhhccc----------ccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEe
Q 006700 443 ---KSKKGLLLFIDEADAFLCERNS----------IHMSEAQRSALNALLFRTG--DQSRDIVLVLAT 495 (635)
Q Consensus 443 ---~~~~~~vL~iDEid~l~~~r~~----------~~~~~~~~~~L~~ll~~~~--~~~~~viiI~tt 495 (635)
..+...||||||++++...-+. .+........+..|+.... ...+.+.+|.|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2445689999999998654321 2223334444555655543 235566666664
No 362
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.24 E-value=0.014 Score=61.03 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=90.0
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC---CcHHHHc--cccceEecCCCCH
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---LDSAITD--RIDEVIEFPLPRE 520 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~---l~~~l~~--R~d~~i~~~~p~~ 520 (635)
+..|++|++++.+.. . ..++.|+..+...+.++++|+.++..+. +...+.. ++ .++.|+.|+.
T Consensus 46 ~~kliii~~~~~~~~--------~---~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~-~~i~~~~~~~ 113 (302)
T TIGR01128 46 ERRLVELRNPEGKPG--------A---KGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNA-QIVECKTPKE 113 (302)
T ss_pred CCeEEEEECCCCCCC--------H---HHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCe-eEEEecCCCH
Confidence 457999999987631 1 1255565555556667777777764332 1112222 55 7889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCC
Q 006700 521 EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC 600 (635)
Q Consensus 521 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~ 600 (635)
.+...++..++..... .++++++..|+..+.| |+..+.+.+...+...++.
T Consensus 114 ~~~~~~i~~~~~~~g~-------------------------~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~~~~ 164 (302)
T TIGR01128 114 QELPRWIQARLKKLGL-------------------------RIDPDAVQLLAELVEG----NLLAIAQELEKLALYAPDG 164 (302)
T ss_pred HHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhCCCC
Confidence 9999999999887654 3899999999999866 6666666666554444445
Q ss_pred ccCHHHHHHHHHHHH
Q 006700 601 VLDSQLFREVVEYKV 615 (635)
Q Consensus 601 ~lt~~~i~~~l~~~~ 615 (635)
.||.++|..++....
T Consensus 165 ~It~e~I~~~~~~~~ 179 (302)
T TIGR01128 165 KITLEDVEEAVSDSA 179 (302)
T ss_pred CCCHHHHHHHHhhhh
Confidence 799999998887543
No 363
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.0015 Score=64.23 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-++|.||+|+||||++.+++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999988874
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.23 E-value=0.00031 Score=72.45 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=57.8
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC-eeeccCCC---c------
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD-YAMMTGGD---V------ 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~-~~~l~~~~---~------ 423 (635)
..++++++-.+.....+.+++....... ++++|.||+|+||||+..++...+... ...+...+ +
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~------~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~ 173 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGR------GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN 173 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTT------EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS
T ss_pred cccHhhccCchhhHHHHHHHHhhccccc------eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc
Confidence 3466777776666666665555432222 369999999999999999999987444 22221111 1
Q ss_pred -ccchh-hHHHHHHHHHHHHhhcCCcEEEEecCchh
Q 006700 424 -APLGA-QAVTKIHEIFDWAKKSKKGLLLFIDEADA 457 (635)
Q Consensus 424 -~~~~~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~ 457 (635)
..+.. .....+..++..+.+.. |.+|+|+|+-.
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~-pD~iiigEiR~ 208 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQD-PDVIIIGEIRD 208 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred eEEEEeecCcccHHHHHHHHhcCC-CCcccccccCC
Confidence 11111 13345566677666666 68999999963
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.23 E-value=0.0012 Score=68.11 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=23.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+.+++|.||||+||||+.+.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 35799999999999999999998873
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.22 E-value=0.0019 Score=62.40 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=53.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCcccch----hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLG----AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~~~~----~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 461 (635)
..+.|.||+|+|||||.+.|+..+.. --+.+++..+.... -+....-+-.+..+... .|.++++||-..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~-~p~lllLDEPts~--- 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLR-NATFYLFDEPSAY--- 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhc-CCCEEEEECCccc---
Confidence 35889999999999999999987521 12223332221110 11111111122222223 4689999998643
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
.+...+..+..++..+... .+..+|++|...
T Consensus 102 -----LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 132 (177)
T cd03222 102 -----LDIEQRLNAARAIRRLSEE-GKKTALVVEHDL 132 (177)
T ss_pred -----CCHHHHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 2445555555555554322 213456666543
No 367
>PRK14532 adenylate kinase; Provisional
Probab=97.22 E-value=0.00028 Score=68.59 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=26.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+++|.||||+||||+++.||+.+|..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766543
No 368
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.22 E-value=0.0016 Score=68.52 Aligned_cols=74 Identities=24% Similarity=0.295 Sum_probs=45.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------c----------hhhHHHHHHHHHHHHhhcCCcE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------L----------GAQAVTKIHEIFDWAKKSKKGL 448 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~----------~~~~~~~l~~~f~~a~~~~~~~ 448 (635)
+.++|+||||||||+||..++... |...++++...... + ..........+.....+.....
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 468899999999999999887554 55555554322100 0 0111222223333333455678
Q ss_pred EEEecCchhhhhh
Q 006700 449 LLFIDEADAFLCE 461 (635)
Q Consensus 449 vL~iDEid~l~~~ 461 (635)
+|+||-+-.+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998864
No 369
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.21 E-value=0.0014 Score=60.99 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=53.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCC-CcccchhhHHHHHHH-HHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGG-DVAPLGAQAVTKIHE-IFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~-~~~~~~~~~~~~l~~-~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
...+.|.||+|+|||||++.|+..+... -+.+++. .+..+..-+.+.... .+..+... +|.++++||-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~-~p~illlDEP~~----- 99 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLE-NPNLLLLDEPTN----- 99 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcc-----
Confidence 3468899999999999999998875211 1222221 111111011111111 12222223 467999999864
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 498 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~ 498 (635)
+.+...+..+..++..+. ..+|++|+..
T Consensus 100 ---~LD~~~~~~l~~~l~~~~-----~til~~th~~ 127 (144)
T cd03221 100 ---HLDLESIEALEEALKEYP-----GTVILVSHDR 127 (144)
T ss_pred ---CCCHHHHHHHHHHHHHcC-----CEEEEEECCH
Confidence 234555666666665541 2566677654
No 370
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.21 E-value=0.00064 Score=71.66 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 363 ~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.++-.+.+..++...........+..+|+|+|+||||||++++.|+..+|.+|+.+
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45555566666665444433345667899999999999999999999999999854
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.21 E-value=0.00097 Score=62.47 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=26.3
Q ss_pred EEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++|+|+||+|||++++.|+..+ +..++.+++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998 656665554
No 372
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.19 E-value=0.0018 Score=65.40 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++++||||||||+++..++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999654
No 373
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.19 E-value=0.0021 Score=63.32 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3599999999999999999984
No 374
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0003 Score=65.49 Aligned_cols=28 Identities=46% Similarity=0.714 Sum_probs=26.1
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
+-+.|||||||||+++.||+++|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.18 E-value=0.0023 Score=70.33 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=28.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++..++|+|++|+||||++..||..+ |..+..+++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46789999999999999999999877 445554544
No 376
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.17 E-value=0.00033 Score=67.64 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
++|+||||+||||+|+.|++.+|..++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998655443
No 377
>PRK14527 adenylate kinase; Provisional
Probab=97.17 E-value=0.0037 Score=60.98 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=26.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.-++|+||||+||||+|+.|+..++...+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 459999999999999999999998866543
No 378
>PLN02674 adenylate kinase
Probab=97.17 E-value=0.0012 Score=66.95 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
...++|.||||+||||+++.||..+|..++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4579999999999999999999999865543
No 379
>PRK13948 shikimate kinase; Provisional
Probab=97.16 E-value=0.00045 Score=66.98 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
.++.+|+|.|++|||||++++.||+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45678999999999999999999999999998654
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00035 Score=65.94 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=27.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
.++++|.|||||||+++.|+ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8998887764
No 381
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.14 E-value=0.0039 Score=61.34 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=19.1
Q ss_pred eEEEecCCCCChHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA 408 (635)
.++|+||.|+||||+.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0051 Score=66.68 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=55.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCccc--------------chhhHHHHHHHHHHHHhhcCCcEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAP--------------LGAQAVTKIHEIFDWAKKSKKGLL 449 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~--------------~~~~~~~~l~~~f~~a~~~~~~~v 449 (635)
..++|.||+|+||||++..||..+ |..+..+++..... +.......+..+...+.. ..+.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCE
Confidence 458899999999999999999754 34444444432111 000111123333333332 34678
Q ss_pred EEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-CCCCEEEEEEeCCC
Q 006700 450 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-QSRDIVLVLATNRP 498 (635)
Q Consensus 450 L~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-~~~~viiI~ttN~~ 498 (635)
||||=...... .......|..++...+. .+..+++|+.++..
T Consensus 303 VLIDTaGr~~r-------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 303 ILIDTAGYSHR-------NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred EEEeCCCCCcc-------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 88886543211 23334455555554432 23456666665543
No 383
>PRK06217 hypothetical protein; Validated
Probab=97.13 E-value=0.00043 Score=67.10 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
.|+|.|+||+||||+++.|++.+|.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999998876653
No 384
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.13 E-value=0.0022 Score=64.29 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=27.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~ 421 (635)
..++|+||||+|||+++..++... +..++++++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 468999999999999999998754 5666666655
No 385
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.12 E-value=0.0016 Score=70.00 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 386
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.10 E-value=0.00044 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=27.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
+.++|.||||+||||+|+.|+..++.+++.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 35999999999999999999999887766543
No 387
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0024 Score=69.87 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=57.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCee-eccCCCcccchhh---
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA-MMTGGDVAPLGAQ--- 429 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~-~l~~~~~~~~~~~--- 429 (635)
..+|+++...+.....+..++. .|.+-+|++||+|+||||+..++...++.+.. .++-.|...+...
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~ 304 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGIN 304 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcc
Confidence 3356777777777777766543 35556999999999999999999998865543 3333332221100
Q ss_pred -------HHHHHHHHHHHHhhcCCcEEEEecCchh
Q 006700 430 -------AVTKIHEIFDWAKKSKKGLLLFIDEADA 457 (635)
Q Consensus 430 -------~~~~l~~~f~~a~~~~~~~vL~iDEid~ 457 (635)
..-.....+....+.. |.||++.||-.
T Consensus 305 Q~qVN~k~gltfa~~LRa~LRqD-PDvImVGEIRD 338 (500)
T COG2804 305 QVQVNPKIGLTFARALRAILRQD-PDVIMVGEIRD 338 (500)
T ss_pred eeecccccCCCHHHHHHHHhccC-CCeEEEeccCC
Confidence 0011122222222444 79999999963
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.09 E-value=0.0033 Score=64.69 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=54.4
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC---CeeeccCC-C-----cc--
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL---DYAMMTGG-D-----VA-- 424 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~---~~~~l~~~-~-----~~-- 424 (635)
.++++...+...+.|..++.. +...++|.||+|+||||+++++...+.. .++.+... + +.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~---------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~ 128 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK---------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQV 128 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc---------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEE
Confidence 456666667777666555431 1235999999999999999999877742 23332111 1 11
Q ss_pred cchhhHHHHHHHHHHHHhhcCCcEEEEecCch
Q 006700 425 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 456 (635)
Q Consensus 425 ~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid 456 (635)
.+.......+...+..+.+.. |.+|+|+|+.
T Consensus 129 ~v~~~~~~~~~~~l~~~lR~~-PD~i~vgEiR 159 (264)
T cd01129 129 QVNEKAGLTFARGLRAILRQD-PDIIMVGEIR 159 (264)
T ss_pred EeCCcCCcCHHHHHHHHhccC-CCEEEeccCC
Confidence 111111123445555555555 7899999996
No 389
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.09 E-value=0.0025 Score=67.03 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=43.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcc-------------c---chhhHHHHHHHHHHHHhhcCCcE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA-------------P---LGAQAVTKIHEIFDWAKKSKKGL 448 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~-------------~---~~~~~~~~l~~~f~~a~~~~~~~ 448 (635)
+.++|+||||||||+||..++... |...++++..... . .................+.....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 468899999999999998876654 4455544432211 0 00011111222222233445578
Q ss_pred EEEecCchhhhhh
Q 006700 449 LLFIDEADAFLCE 461 (635)
Q Consensus 449 vL~iDEid~l~~~ 461 (635)
+|+||-+..+.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999998764
No 390
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.09 E-value=0.027 Score=53.10 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=77.3
Q ss_pred ecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHH
Q 006700 393 YGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQR 472 (635)
Q Consensus 393 ~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~ 472 (635)
.+.+||||||++.+|++.+|- +-.+...++..- ....-+..++....... ..+||+|=-... ...+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k--~~~~f~~~~l~~L~~~~-~~vViaDRNNh~----------~reR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK--RKPKFIKAVLELLAKDT-HPVVIADRNNHQ----------KRER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC--CHHHHHHHHHHHHhhCC-CCEEEEeCCCch----------HHHH
Confidence 589999999999999999874 333444344321 22233334444442223 458888866654 3344
Q ss_pred HHHHHHHHHhCC----CCCCEEEEEEeCCCCCCc--------HHHHccccc--eEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 473 SALNALLFRTGD----QSRDIVLVLATNRPGDLD--------SAITDRIDE--VIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 473 ~~L~~ll~~~~~----~~~~viiI~ttN~~~~l~--------~~l~~R~d~--~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
..|...+..+.. ...++.+|+-.-..+.-. ..++.|=|. .|.....+......|+..|++++..
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep 148 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEP 148 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCC
Confidence 444444444332 334777777654333322 233446554 5566666778888999999998865
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.09 E-value=0.002 Score=66.48 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=43.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcc-----cchhhHHHHH----HHHHHHHhhcCCcEEEEecCch
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA-----PLGAQAVTKI----HEIFDWAKKSKKGLLLFIDEAD 456 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~-----~~~~~~~~~l----~~~f~~a~~~~~~~vL~iDEid 456 (635)
-|+|+|.||+|||++|+.|...+ +..+..++-..+. +......+.+ ...+.... ....||++|+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l--s~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL--SKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH--TT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh--ccCeEEEEeCCc
Confidence 38999999999999999999986 4455444422211 1122223333 33333332 234699999998
Q ss_pred hhhhhcccccCcHHHHHHHHHHHHHhC
Q 006700 457 AFLCERNSIHMSEAQRSALNALLFRTG 483 (635)
Q Consensus 457 ~l~~~r~~~~~~~~~~~~L~~ll~~~~ 483 (635)
.+ ..++--|..+-....
T Consensus 81 Yi----------Kg~RYelyclAr~~~ 97 (270)
T PF08433_consen 81 YI----------KGMRYELYCLARAYG 97 (270)
T ss_dssp -S----------HHHHHHHHHHHHHTT
T ss_pred hH----------HHHHHHHHHHHHHcC
Confidence 76 556666666655543
No 392
>PRK14530 adenylate kinase; Provisional
Probab=97.08 E-value=0.00048 Score=68.59 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.||||+||||+++.|++.+|.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998876643
No 393
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00044 Score=65.70 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=29.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
++++|.|++|+||||+.+.||+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998664
No 394
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.06 E-value=0.00051 Score=63.44 Aligned_cols=30 Identities=40% Similarity=0.659 Sum_probs=27.7
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
++|.|+||||||++|+.|+..++.+++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987765
No 395
>PRK13808 adenylate kinase; Provisional
Probab=97.06 E-value=0.0061 Score=64.39 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=26.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+||||+|||++++.|+..+|..++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999998765543
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.06 E-value=0.0054 Score=59.59 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEecCCCCChHHHHHHHHH
Q 006700 390 MLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~ 409 (635)
++|+||.|+|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 397
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.04 E-value=0.00086 Score=65.99 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=18.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+++.||.|||||++|-+.|-.+
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999988765
No 398
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.04 E-value=0.00052 Score=66.78 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=26.0
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
|+|+||||+||||+++.|+..+|..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776543
No 399
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.04 E-value=0.041 Score=58.48 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh------CCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l------~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~ 459 (635)
..+.+||||+-=-=+...++.+...+ ..++..+++.+.. ...+...+....-..+..|++|++++.+.
T Consensus 16 ~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~------~~~l~~~~~t~~lF~~~klvii~~~~~l~ 89 (340)
T PRK05574 16 LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD------WDDVLEACQSLPLFSDRKLVELRLPEFLT 89 (340)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC------HHHHHHHhhccCccccCeEEEEECCCCCC
Confidence 44579999977322223333443332 1234444444321 12222222112222345789999998763
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCC-CCCEEEEEEeCCCCC---C---cHHHHccccceEecCCCCHHHHHHHHHHHHH
Q 006700 460 CERNSIHMSEAQRSALNALLFRTGDQ-SRDIVLVLATNRPGD---L---DSAITDRIDEVIEFPLPREEERFKLLKLYLK 532 (635)
Q Consensus 460 ~~r~~~~~~~~~~~~L~~ll~~~~~~-~~~viiI~ttN~~~~---l---~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~ 532 (635)
. ......+..+...+... ...+++|+.++..+. + -..+..+. .++.++.++..+...++..++.
T Consensus 90 ~--------~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~-~~~~~~~~~~~~~~~~i~~~~~ 160 (340)
T PRK05574 90 G--------AKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKA-VVVEAQPPKEAELPQWIQQRLK 160 (340)
T ss_pred c--------hhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCc-eEEEcCCCCHHHHHHHHHHHHH
Confidence 2 11233455555444212 224566666554321 2 22343444 7889999999999999999988
Q ss_pred hhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 533 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
..+. .++++++..|+..+.| |+..+.+.+...+...++..||.++|..++.
T Consensus 161 ~~g~-------------------------~i~~~a~~~L~~~~~~----d~~~l~~El~KL~l~~~~~~It~~~I~~~i~ 211 (340)
T PRK05574 161 QQGL-------------------------QIDAAALQLLAERVEG----NLLALAQELEKLALLYPDGKITLEDVEEAVP 211 (340)
T ss_pred HcCC-------------------------CCCHHHHHHHHHHhCc----hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 7665 3899999999988766 7777777776665433333399999998887
Q ss_pred HHHh
Q 006700 613 YKVE 616 (635)
Q Consensus 613 ~~~~ 616 (635)
....
T Consensus 212 ~~~~ 215 (340)
T PRK05574 212 DSAR 215 (340)
T ss_pred hhhc
Confidence 7553
No 400
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0038 Score=59.74 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=57.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCCCcc------------c------c-hh------hHHHHHHHH-
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVA------------P------L-GA------QAVTKIHEI- 437 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~~~~------------~------~-~~------~~~~~l~~~- 437 (635)
+...+.|.||+|+|||||.+.|+..+... -+.+++.++. . + .. -+.+....+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 34469999999999999999999875210 1122221110 0 0 00 000111111
Q ss_pred HHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006700 438 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 438 f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l 501 (635)
+..+. ..+|.+|++||-.. +.+...+..+..++..+.. +..+|++|+..+.+
T Consensus 107 la~al-~~~p~llllDEP~~--------gLD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARAL-LRDPPILILDEATS--------ALDPETEALILEALRALAK---GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHH-hcCCCEEEEECCCc--------CCCHHHHHHHHHHHHHhcC---CCEEEEEecCHHHH
Confidence 22222 23478999999864 3345566667777766542 25677778765544
No 401
>PRK06762 hypothetical protein; Provisional
Probab=97.02 E-value=0.00061 Score=64.77 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=27.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~ 420 (635)
.-++|+|+||+||||+|+.|++.++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 358999999999999999999998655555543
No 402
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.071 Score=60.26 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006700 127 ERQRKLAEEHRNLVQQKAQARAQG 150 (635)
Q Consensus 127 ~~~~~~~ee~r~~~~~~~~~~~~~ 150 (635)
|+.|+...|..+.++.|.+.+.|+
T Consensus 364 EqErk~qlElekqLerQReiE~qr 387 (1118)
T KOG1029|consen 364 EQERKAQLELEKQLERQREIERQR 387 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444433
No 403
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.02 E-value=0.0023 Score=62.62 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=59.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM 467 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~ 467 (635)
-++|+||+|||||.+|-.+|+.+|.+++..+.-...+ +...+..... ...... .=++|||-..-- +.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~---~el~~~---~RiyL~~r~l~~-----G~- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP---SELKGT---RRIYLDDRPLSD-----GI- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S---GGGTT----EEEES----GGG------S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH---HHHccc---ceeeeccccccC-----CC-
Confidence 4799999999999999999999999998876544322 1000000000 000011 127888654211 11
Q ss_pred cHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHcccc------ceEecCCCCHHHHHHHHHHHHHhhcC
Q 006700 468 SEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRID------EVIEFPLPREEERFKLLKLYLKKYLC 536 (635)
Q Consensus 468 ~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d------~~i~~~~p~~~er~~Il~~~l~~~~~ 536 (635)
-........|+..+......-.+|+-.-....|..-..+++. .+..++.|+.+-...-......++..
T Consensus 71 -i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred -cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 111223444444443222233455544443333333333322 45677888888776666666666654
No 404
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.01 E-value=0.0038 Score=60.16 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+|+|||||++.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999999875
No 405
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.01 E-value=0.0026 Score=61.50 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
|.|+|++|+||||+++.|++ +|.+++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~ 28 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID 28 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe
Confidence 78999999999999999998 7766543
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.00 E-value=0.00053 Score=64.98 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=23.9
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
|+|+|||||||||+++.|+..++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 407
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=97.00 E-value=0.0044 Score=66.90 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=49.9
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceE--ecCCCCHHHH
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVI--EFPLPREEER 523 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i--~~~~p~~~er 523 (635)
|..|+||||+|.++.+ .++...+.+..+...+. ++.|-|++.|..|.+++..+++-+...| -+...+..+.
T Consensus 255 PklVfFfDEAHLLF~d-----a~kall~~ieqvvrLIR--SKGVGv~fvTQ~P~DiP~~VL~QLGnrIQHaLRAfTP~Dq 327 (502)
T PF05872_consen 255 PKLVFFFDEAHLLFND-----APKALLDKIEQVVRLIR--SKGVGVYFVTQNPTDIPDDVLGQLGNRIQHALRAFTPKDQ 327 (502)
T ss_pred ceEEEEEechhhhhcC-----CCHHHHHHHHHHHHHhh--ccCceEEEEeCCCCCCCHHHHHhhhhHHHHHHhcCCHhHH
Confidence 3347889999998743 24555566666655554 5667788889999999999998665555 3444555555
Q ss_pred HH
Q 006700 524 FK 525 (635)
Q Consensus 524 ~~ 525 (635)
..
T Consensus 328 Ka 329 (502)
T PF05872_consen 328 KA 329 (502)
T ss_pred HH
Confidence 44
No 408
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.99 E-value=0.0025 Score=67.32 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=42.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---C--CCeeecc-CCCc-------ccchhhHHHHHHHHHHHHhhcCCcEEEEecC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---G--LDYAMMT-GGDV-------APLGAQAVTKIHEIFDWAKKSKKGLLLFIDE 454 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~--~~~~~l~-~~~~-------~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDE 454 (635)
.+++|+||+|+||||++++|+..+ . ..++.+. ..++ ..+.....-.+..++..+.+.+ |..|++.|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~-PD~IivGE 227 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR-PDRILVGE 227 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC-CCEEEEec
Confidence 469999999999999999999864 1 1222211 1111 1111111224566777777666 78999999
Q ss_pred ch
Q 006700 455 AD 456 (635)
Q Consensus 455 id 456 (635)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 96
No 409
>PRK06547 hypothetical protein; Provisional
Probab=96.99 E-value=0.00075 Score=64.84 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=28.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.++..|+|.|++|||||++++.|++.++.+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3445788999999999999999999988776654
No 410
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.98 E-value=0.00061 Score=63.53 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=24.2
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
++|+|+||+||||+|+.|+..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 789999999999999999999876554
No 411
>PTZ00121 MAEBL; Provisional
Probab=96.97 E-value=0.089 Score=63.22 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=11.1
Q ss_pred ceEecCCCCHHHHHHHHHH
Q 006700 511 EVIEFPLPREEERFKLLKL 529 (635)
Q Consensus 511 ~~i~~~~p~~~er~~Il~~ 529 (635)
..+....-+.+++..|...
T Consensus 1959 ~~issgtCS~eerk~LCCS 1977 (2084)
T PTZ00121 1959 DNISSGNCSDEERKELCCS 1977 (2084)
T ss_pred hccCCCCCChhhhhchhhh
Confidence 3445566667777765443
No 412
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.0012 Score=66.06 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=30.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 423 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~ 423 (635)
+.-|.|.|+||+||||+|+.|+..+ |.+++.+...++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 3468899999999999999999998 666776655554
No 413
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.97 E-value=0.0061 Score=58.29 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=68.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeec---cCC-Cccc-----------------------chhhHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMM---TGG-DVAP-----------------------LGAQAVTKIHEIF 438 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l---~~~-~~~~-----------------------~~~~~~~~l~~~f 438 (635)
-+.+|+++|.|||++|-.+|-.. |.+++.+ .+. ..+. -...........+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 38899999999999999887664 4443222 111 0000 0001112234445
Q ss_pred HHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEec
Q 006700 439 DWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEF 515 (635)
Q Consensus 439 ~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~ 515 (635)
..+.. ...+.+|+|||+-..+.- .-.+ ...++..+...+.++=||+|... .++.++...|.+-++
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~---gli~------~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKY---GYLD------VEEVVEALQERPGHQHVIITGRG---CPQDLLELADLVTEM 154 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHC---CCcC------HHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCceeeee
Confidence 44443 566899999999865421 1111 22344444556677889999875 478888888766555
Q ss_pred C
Q 006700 516 P 516 (635)
Q Consensus 516 ~ 516 (635)
.
T Consensus 155 ~ 155 (173)
T TIGR00708 155 R 155 (173)
T ss_pred c
Confidence 4
No 414
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=96.95 E-value=0.059 Score=57.59 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=109.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC------CCeeeccCCCcccchhhHHHHHHHHHHHHhh---cCCcEEEEecCchh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADA 457 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~------~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~ 457 (635)
++.+||||+-.-.....++.+.+.+. .++..+.+.+ ....+..+++.+.. .....+|++.+.+.
T Consensus 20 ~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e-------~~~~~~~~~~~~~t~slF~~~rlViv~~~~~ 92 (343)
T PRK06585 20 IRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDD-------LDADPARLEDEANAISLFGGRRLIWVRAGSK 92 (343)
T ss_pred CeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHH-------hhcCHHHHHHHHhCCCCCCCceEEEEECCch
Confidence 35799999999888777887777652 2233333221 11113344444433 23456888885431
Q ss_pred hhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC---CcHHHH-ccccceEecCCCCHHHHHHHHHHHHHh
Q 006700 458 FLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---LDSAIT-DRIDEVIEFPLPREEERFKLLKLYLKK 533 (635)
Q Consensus 458 l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~---l~~~l~-~R~d~~i~~~~p~~~er~~Il~~~l~~ 533 (635)
.....|..++ ...+...++|+.+...+. +...+. ......+.+..|+..+...++..++..
T Consensus 93 ------------~~~~~L~~~l---~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 157 (343)
T PRK06585 93 ------------NLAAALKALL---ESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAE 157 (343)
T ss_pred ------------hHHHHHHHHH---cCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHH
Confidence 1223344443 333444555655433221 112221 122356788889999999999999987
Q ss_pred hcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCCCccCHHHHHHHHH
Q 006700 534 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA-RPDCVLDSQLFREVVE 612 (635)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~-s~~~~lt~~~i~~~l~ 612 (635)
.+. .++++++..|+..+.| |+..+.+.++-.+.. .++..||.++|..++.
T Consensus 158 ~g~-------------------------~i~~~a~~~L~~~~g~----dl~~l~~EleKL~ly~~~~~~It~edV~~lv~ 208 (343)
T PRK06585 158 AGL-------------------------RITPDARALLVALLGG----DRLASRNEIEKLALYAHGKGEITLDDVRAVVG 208 (343)
T ss_pred CCC-------------------------CCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Confidence 765 3899999999999876 677777766655443 3456899999999876
Q ss_pred HHHh
Q 006700 613 YKVE 616 (635)
Q Consensus 613 ~~~~ 616 (635)
....
T Consensus 209 ~~~e 212 (343)
T PRK06585 209 DASA 212 (343)
T ss_pred Cccc
Confidence 6543
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.95 E-value=0.00079 Score=67.73 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.||||+||||+|+.||+.+|.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 499999999999999999999998877654
No 416
>PRK13946 shikimate kinase; Provisional
Probab=96.95 E-value=0.00079 Score=65.37 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=29.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
++|+|.|+||||||++++.||+.+|.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 47999999999999999999999999987654
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.95 E-value=0.0044 Score=66.31 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=20.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.+.|.|.||+|+||||+.-.||..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999997666666554
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=96.93 E-value=0.0012 Score=54.39 Aligned_cols=22 Identities=50% Similarity=0.773 Sum_probs=16.7
Q ss_pred EEEecCCCCChH-HHHHHHHHHh
Q 006700 390 MLFYGPPGTGKT-MVAREIARKS 411 (635)
Q Consensus 390 iLL~GppGtGKT-~lA~~lA~~l 411 (635)
+++.|||||||| +++..++..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 667999999999 5555665554
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.93 E-value=0.0044 Score=61.89 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.-+.|+||||+|||+++..++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 458899999999999999998753
No 420
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.92 E-value=0.0083 Score=57.52 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 458999999999999999999875
No 421
>PLN02200 adenylate kinase family protein
Probab=96.92 E-value=0.00094 Score=67.46 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=28.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~ 423 (635)
+..++|+|||||||||+|+.|++.+|..+ ++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 45789999999999999999999998654 444443
No 422
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.92 E-value=0.011 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+...|+|.|.+|+|||+++.+|...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999864
No 423
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0067 Score=64.80 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
...+|+||||||||++++.+++.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998773
No 424
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.91 E-value=0.00091 Score=63.89 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=27.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+++|+|+||||||++++.||+.+|.+|+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 589999999999999999999999988754
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0036 Score=69.54 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|+||+|+||||++..|+..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998754
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.91 E-value=0.0069 Score=59.87 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+.++|+||+|+|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998743
No 427
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.90 E-value=0.0075 Score=58.21 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...+.|.||+|+|||||.+.|+...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999865
No 428
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.90 E-value=0.0013 Score=70.27 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=40.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCCCccc--------------chhhHHHHHHHHHHHHhhcCCcEEEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAP--------------LGAQAVTKIHEIFDWAKKSKKGLLLF 451 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~~~~~--------------~~~~~~~~l~~~f~~a~~~~~~~vL~ 451 (635)
..+||+||+|+||||+.+++...+..+ ...++..+... .+ .....+...+..+.+.. |.+|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~-pd~i~ 200 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVG-LDTLSFANALRAALRED-PDVIL 200 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccC-CCCcCHHHHHHHhhccC-CCEEE
Confidence 469999999999999999999876422 11111111100 11 11122444555555554 78999
Q ss_pred ecCch
Q 006700 452 IDEAD 456 (635)
Q Consensus 452 iDEid 456 (635)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99995
No 429
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.89 E-value=0.001 Score=63.98 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=29.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~ 420 (635)
.+|+|.||+|+|||++++.|+..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999988876543
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.89 E-value=0.0013 Score=64.09 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=40.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCC--------Ccccch-------hhHHHHHHHHHHHHhhcCCcEEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGG--------DVAPLG-------AQAVTKIHEIFDWAKKSKKGLLL 450 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~--------~~~~~~-------~~~~~~l~~~f~~a~~~~~~~vL 450 (635)
.+++|.||+|+||||+.++|+..+... .+.+... ....+. ......+...+..+.+.. |.++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~-pd~i 104 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR-PDRI 104 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC-CCEE
Confidence 369999999999999999999876321 2211111 000000 011123445555555555 6899
Q ss_pred EecCch
Q 006700 451 FIDEAD 456 (635)
Q Consensus 451 ~iDEid 456 (635)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999995
No 431
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.89 E-value=0.0033 Score=61.17 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=24.0
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
|.|+|++||||||+++.|+...+.+++.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~ 29 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVID 29 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 7899999999999999999986566543
No 432
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.88 E-value=0.0068 Score=57.54 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+..++.||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999986544
No 433
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.88 E-value=0.003 Score=66.69 Aligned_cols=68 Identities=13% Similarity=0.255 Sum_probs=42.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC-----CCeeecc-CCCc-------ccchhhHHHHHHHHHHHHhhcCCcEEEEecC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMT-GGDV-------APLGAQAVTKIHEIFDWAKKSKKGLLLFIDE 454 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~-----~~~~~l~-~~~~-------~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDE 454 (635)
.++||+|++|+||||++++|...+. ..++.+- ..++ ..+.....-.+..++..+.+.+ |.+|++.|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~-PD~IivGE 223 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR-PDRIIVGE 223 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC-CCEEEEee
Confidence 3699999999999999999998762 2222221 1111 1111111223556666666666 78999999
Q ss_pred ch
Q 006700 455 AD 456 (635)
Q Consensus 455 id 456 (635)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 95
No 434
>PRK13764 ATPase; Provisional
Probab=96.87 E-value=0.0015 Score=74.01 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=23.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.++|++||||+||||++.+|+.++.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999998874
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.86 E-value=0.0054 Score=64.64 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=41.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC--eeecc-CCCc-------ccch------hhHHHHHHHHHHHHhhcCCcEEEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD--YAMMT-GGDV-------APLG------AQAVTKIHEIFDWAKKSKKGLLLF 451 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~-~~~~-------~~~~------~~~~~~l~~~f~~a~~~~~~~vL~ 451 (635)
.+++|.||+|+||||++++|+..+... .+.+. ..++ ..+. +...-.+..++..+.+.. |.+|+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~-pd~ii 223 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR-PDRII 223 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC-CCeEE
Confidence 469999999999999999999877321 11111 0000 0000 011123455666665555 78999
Q ss_pred ecCch
Q 006700 452 IDEAD 456 (635)
Q Consensus 452 iDEid 456 (635)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99996
No 436
>PHA00350 putative assembly protein
Probab=96.86 E-value=0.0021 Score=69.37 Aligned_cols=117 Identities=23% Similarity=0.330 Sum_probs=64.9
Q ss_pred eEEEecCCCCChHHHHHH--HHHHh--CCCeee-ccCCCcccc----------------hh---hHHHHHHHHHHHHhhc
Q 006700 389 NMLFYGPPGTGKTMVARE--IARKS--GLDYAM-MTGGDVAPL----------------GA---QAVTKIHEIFDWAKKS 444 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~--lA~~l--~~~~~~-l~~~~~~~~----------------~~---~~~~~l~~~f~~a~~~ 444 (635)
..|++|.||+|||.-|-. +-..+ |+.++. +.|-.+..+ .. .....+...|.| .
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~TNI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w---~ 79 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVITNIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSW---R 79 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHhhcccCcccceeEEeccccccchhhhcccccc---C
Confidence 378999999999987654 33333 655432 222111000 00 001111222222 2
Q ss_pred CCcEEEEecCchhhhhhcccccCc---------------HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccc
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMS---------------EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRI 509 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~---------------~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~ 509 (635)
..+++|+|||+..+++.+....+. ......+..| .... ..++=||++|-.+..|+..++.++
T Consensus 80 p~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l-~~HR--H~G~DIiliTQ~~~~Id~~iR~lv 156 (399)
T PHA00350 80 PRGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAF-MRHR--HYNWDIILLTPNIRKIHSDIRAMI 156 (399)
T ss_pred CCCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHH-HHhc--ccCceEEEEeCCHHHhhHHHHHhh
Confidence 368899999999999876441110 0112233333 3332 335668888988889999998876
Q ss_pred cc
Q 006700 510 DE 511 (635)
Q Consensus 510 d~ 511 (635)
..
T Consensus 157 E~ 158 (399)
T PHA00350 157 EM 158 (399)
T ss_pred hh
Confidence 54
No 437
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.85 E-value=0.015 Score=60.02 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=27.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
.+++.++|+||+|+||||++..||..+ |..+..+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 345678899999999999999998876 444444443
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.0095 Score=59.66 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 439
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.85 E-value=0.00096 Score=64.48 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.++|.||||+||||+++.|+..+|..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48999999999999999999998766543
No 440
>PRK02496 adk adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=64.50 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.++|.||||+||||+++.|+..+|.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776543
No 441
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.84 E-value=0.0075 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999999876
No 442
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0025 Score=60.34 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=31.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 423 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~ 423 (635)
+..+.|+|.+|+||||+|.+|.+.| |...+.++|..+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3468999999999999999999987 788888888654
No 443
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.84 E-value=0.0013 Score=65.91 Aligned_cols=22 Identities=23% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006700 390 MLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l 411 (635)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999884
No 444
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.84 E-value=0.0066 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
|+|+.|+||+|||++.+.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 79999999999999999887765
No 445
>PRK14529 adenylate kinase; Provisional
Probab=96.83 E-value=0.0042 Score=62.11 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=25.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
+|+|.||||+||||+++.|+..++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4899999999999999999999987654
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.83 E-value=0.0012 Score=69.10 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=43.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC-----CCeeecc--------CCCcccc-hhhHHHHHHHHHHHHhhcCCcEEEEec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG-----LDYAMMT--------GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFID 453 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~-----~~~~~l~--------~~~~~~~-~~~~~~~l~~~f~~a~~~~~~~vL~iD 453 (635)
.++|++||+|+||||++++|...+. ..++.+- +.+...+ .......+..++..+.+.+ |.+|++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~-pD~iivG 211 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR-PDRIIVG 211 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC-CCEEEEe
Confidence 3699999999999999999998863 2222221 1111111 0111225566777776666 7899999
Q ss_pred Cch
Q 006700 454 EAD 456 (635)
Q Consensus 454 Eid 456 (635)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 996
No 447
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.83 E-value=0.018 Score=55.55 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
.-+.|.||+|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4588999999999999999864
No 448
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0065 Score=59.64 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=28.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~ 421 (635)
.+..+.|+|++|+||||+++.|+..+ |...+.+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 34578999999999999999999977 3445555553
No 449
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.82 E-value=0.0032 Score=70.90 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+|..++||.||+|||||++.|+||..-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455689999999999999999999764
No 450
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.81 E-value=0.017 Score=68.12 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999866
No 451
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.81 E-value=0.0052 Score=65.33 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=42.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC---c--------ccc------hhhHHHHHHHHHHHHhhcCCcEEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD---V--------APL------GAQAVTKIHEIFDWAKKSKKGLLL 450 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~---~--------~~~------~~~~~~~l~~~f~~a~~~~~~~vL 450 (635)
.++|++||+|+||||+.++|..++....-.++..+ + ..+ .+...-.+..++..+.+.+ |.+|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~-PD~I 239 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLR-PDRI 239 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccC-CCeE
Confidence 36999999999999999999998753211111111 0 000 0111123456666666666 7899
Q ss_pred EecCch
Q 006700 451 FIDEAD 456 (635)
Q Consensus 451 ~iDEid 456 (635)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999996
No 452
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.81 E-value=0.0011 Score=65.89 Aligned_cols=29 Identities=41% Similarity=0.708 Sum_probs=25.9
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
|+|+||||+||||+|+.|+..+|..++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998776543
No 453
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.80 E-value=0.0036 Score=61.41 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.+.|+|++|+|||++++.|+..+|.+++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 48899999999999999999988887764
No 454
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.02 Score=65.60 Aligned_cols=143 Identities=22% Similarity=0.327 Sum_probs=98.3
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH-----------------hCCCCCCEEEEEEeCCC-----CCCcH
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR-----------------TGDQSRDIVLVLATNRP-----GDLDS 503 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~-----------------~~~~~~~viiI~ttN~~-----~~l~~ 503 (635)
.++||||||+..|. ...+...|..++.. .+..+.++.+|+..|+. ..+++
T Consensus 225 ngGVLiIdei~lL~--------~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~ 296 (647)
T COG1067 225 NGGVLIIDEIGLLA--------QPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDR 296 (647)
T ss_pred cCcEEEEEhhhhhC--------cHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCH
Confidence 47899999999874 24555556666544 11234578899999853 34556
Q ss_pred HHHccccceEec--CCC-CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH----cC
Q 006700 504 AITDRIDEVIEF--PLP-REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK----TE 576 (635)
Q Consensus 504 ~l~~R~d~~i~~--~~p-~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~----t~ 576 (635)
.+..-|...++| +.| +.++|.+++..+......+ .++ ..++.+++..|... ++
T Consensus 297 ~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d------------------~~i--p~~~~~Av~~li~~a~R~Ag 356 (647)
T COG1067 297 SRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARD------------------GNI--PHLDKDAVEELIREAARRAG 356 (647)
T ss_pred HHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhc------------------CCC--CCCCHHHHHHHHHHHHHhcc
Confidence 666656555666 456 6788999999998876541 011 13666666666543 21
Q ss_pred -----CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 577 -----GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 577 -----G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
-.++++|..|+..+-..+...+...||.+|++++++...+
T Consensus 357 ~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 357 DQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred ccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhh
Confidence 2478999999997777787777889999999999988554
No 455
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.80 E-value=0.019 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+|+|||||++.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999875
No 456
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.79 E-value=0.0036 Score=67.36 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.+...++|+||||||||++++.|++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3345699999999999999999999864
No 457
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.78 E-value=0.0072 Score=60.53 Aligned_cols=123 Identities=25% Similarity=0.292 Sum_probs=62.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCccc--------ch--------------------------h
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAP--------LG--------------------------A 428 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~--------~~--------------------------~ 428 (635)
...+|++||||||||+++..++... |.+.++++...... ++ .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~ 98 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPN 98 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccccc
Confidence 3469999999999999998876432 55544443221100 00 0
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC----CCCcHH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP----GDLDSA 504 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~----~~l~~~ 504 (635)
+....+..+.......+ +.+++||-+..+... .+ ....+..+..+...+.. .++.+|+|+... ......
T Consensus 99 ~~~~l~~~i~~~i~~~~-~~~vVIDsls~l~~~-~~---~~~~r~~l~~l~~~l~~--~~~t~llt~~~~~~~~~~~~~~ 171 (226)
T PF06745_consen 99 DLEELLSKIREAIEELK-PDRVVIDSLSALLLY-DD---PEELRRFLRALIKFLKS--RGVTTLLTSEMPSGSEDDGTFG 171 (226)
T ss_dssp CHHHHHHHHHHHHHHHT-SSEEEEETHHHHTTS-SS---GGGHHHHHHHHHHHHHH--TTEEEEEEEEESSSSSSSSSTS
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEECHHHHhhc-CC---HHHHHHHHHHHHHHHHH--CCCEEEEEEccccCcccccccc
Confidence 11111222222223333 589999999988221 11 23345566666666632 345555555421 223333
Q ss_pred HHc-cccceEecC
Q 006700 505 ITD-RIDEVIEFP 516 (635)
Q Consensus 505 l~~-R~d~~i~~~ 516 (635)
+.. -+|.+|.+.
T Consensus 172 i~~~l~D~vI~L~ 184 (226)
T PF06745_consen 172 IEHYLADGVIELR 184 (226)
T ss_dssp HHHHHSSEEEEEE
T ss_pred hhhhcccEEEEEE
Confidence 433 456666554
No 458
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.78 E-value=0.0051 Score=54.58 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 006700 390 MLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~ 410 (635)
|+|.|+||+|||+|..+|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999999974
No 459
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.78 E-value=0.0012 Score=65.70 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=26.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+||||+||||+++.||..+|..++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998766553
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.77 E-value=0.00099 Score=59.83 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.9
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006700 390 MLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l 411 (635)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 461
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.76 E-value=0.074 Score=57.60 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=47.8
Q ss_pred EEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC--CCCCCcHHHHccccceEecCCCCHHHHHHH
Q 006700 449 LLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN--RPGDLDSAITDRIDEVIEFPLPREEERFKL 526 (635)
Q Consensus 449 vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN--~~~~l~~~l~~R~d~~i~~~~p~~~er~~I 526 (635)
||+||.+..-. .. .......|...-..+-..+---+|++|++ ....|..++-+|.-..|.+...+.+.-..+
T Consensus 151 VVVIdnF~~k~---~~---~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 151 VVVIDNFLHKA---EE---NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred EEEEcchhccC---cc---cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 88999986421 11 12222233222222222222234555554 334677788887658999999999988888
Q ss_pred HHHHHHhh
Q 006700 527 LKLYLKKY 534 (635)
Q Consensus 527 l~~~l~~~ 534 (635)
+...|...
T Consensus 225 V~~~L~~~ 232 (431)
T PF10443_consen 225 VLSQLDED 232 (431)
T ss_pred HHHHhccc
Confidence 88888664
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.76 E-value=0.0082 Score=64.45 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|+||+|+||||++++++..+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999886
No 463
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.76 E-value=0.03 Score=59.24 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..++|+||+|+||||++..||..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999877
No 464
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.76 E-value=0.0091 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+...+||+||||||||+++..++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999876543
No 465
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.75 E-value=0.01 Score=60.91 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++++||||||||+++..++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999988664
No 466
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.75 E-value=0.0042 Score=64.98 Aligned_cols=23 Identities=48% Similarity=0.676 Sum_probs=21.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++|+|||||||||+|+.|++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999998
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.71 E-value=0.0018 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006700 390 MLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.|.|+||+|||++++.|+..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999986
No 468
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.71 E-value=0.013 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-.+|+||.|+|||.+..+|+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999976653
No 469
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.71 E-value=0.032 Score=54.67 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=21.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++|.|++|+|||+|...+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 357999999999999999998864
No 470
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.70 E-value=0.016 Score=55.47 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=26.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~ 421 (635)
.++|+||||+|||+++..++..+ |..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998876 5556655554
No 471
>PTZ00121 MAEBL; Provisional
Probab=96.70 E-value=0.15 Score=61.32 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 006700 522 ERFKLLKL 529 (635)
Q Consensus 522 er~~Il~~ 529 (635)
.|..|+..
T Consensus 1932 tRE~II~l 1939 (2084)
T PTZ00121 1932 TREEIIKI 1939 (2084)
T ss_pred HHHHHHHH
Confidence 34444443
No 472
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.69 E-value=0.075 Score=57.86 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=41.9
Q ss_pred CcccccccCCcc-ccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 349 GPVEAIKNNGDI-ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 349 ~~~~~~~~~~~v-ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.-.-|..+++.+ ||.+...+.|..-+..+..+.. ..-++.|.-|+|||++.+.+...
T Consensus 15 ~GvVP~~Gl~~~~VGr~~e~~~l~~~l~~v~~G~s-----~~kfi~G~YGsGKTf~l~~i~~~ 72 (416)
T PF10923_consen 15 AGVVPRIGLDHIAVGREREIEALDRDLDRVADGGS-----SFKFIRGEYGSGKTFFLRLIRER 72 (416)
T ss_pred CCCCCcccCcceeechHHHHHHHHHHHHHHhCCCC-----eEEEEEeCCCCcHHHHHHHHHHH
Confidence 334666666765 7888888888877776654322 24788999999999999887654
No 473
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.69 E-value=0.01 Score=61.03 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=24.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh----CCCeeecc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMT 419 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~ 419 (635)
...++|.||||+|||+++..++..+ |.++++++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3468999999999999999887664 44544443
No 474
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.69 E-value=0.012 Score=59.08 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.-+.|+||||||||+++..++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999855
No 475
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.68 E-value=0.009 Score=66.95 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Q 006700 444 SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN 496 (635)
Q Consensus 444 ~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN 496 (635)
..+++||+|||++. -..+.++|..||..+-....++.+|++|-
T Consensus 161 LskYsvIIlDEAHE----------Rsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 161 LSKYSVIILDEAHE----------RSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred cccccEEEEechhh----------hhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 34589999999984 23456778888877765555555665543
No 476
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.015 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...+.|.||+|+|||||.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999865
No 477
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.016 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+...+.|.||+|+|||||++.|+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 334689999999999999999998753
No 478
>PRK09354 recA recombinase A; Provisional
Probab=96.66 E-value=0.0084 Score=63.72 Aligned_cols=73 Identities=26% Similarity=0.318 Sum_probs=43.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------ch----------hhHHHHHHHHHHHHhhcCCcE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKGL 448 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~~ 448 (635)
+.++|+||||||||+|+..++... |...++++...-.. ++ .........+.....+.....
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 468899999999999999876543 44444444322100 00 011112222333333445578
Q ss_pred EEEecCchhhhh
Q 006700 449 LLFIDEADAFLC 460 (635)
Q Consensus 449 vL~iDEid~l~~ 460 (635)
+|+||=+-.+.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.66 E-value=0.0095 Score=60.16 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=25.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh----CCCeeecc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMT 419 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~ 419 (635)
..-++|.|+||+|||+++..++... |.++++++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999998886654 55655544
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.65 E-value=0.0066 Score=67.30 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc--------chh-------hHHHHHHHHHHHHhhcCCcEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--------LGA-------QAVTKIHEIFDWAKKSKKGLL 449 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~--------~~~-------~~~~~l~~~f~~a~~~~~~~v 449 (635)
..+||+|+||+|||+|+..++..+ +.+++++++.+... ++. .....+..+...+... ++.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~-~~~~ 173 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE-NPQA 173 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc-CCcE
Confidence 468899999999999999987765 34566665533211 000 0011233444444433 4789
Q ss_pred EEecCchhhhh
Q 006700 450 LFIDEADAFLC 460 (635)
Q Consensus 450 L~iDEid~l~~ 460 (635)
|+||.+..+..
T Consensus 174 vVIDSIq~l~~ 184 (454)
T TIGR00416 174 CVIDSIQTLYS 184 (454)
T ss_pred EEEecchhhcc
Confidence 99999998754
No 481
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0061 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..-|.||+||||||+.+++-+..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhc
Confidence 46799999999999999997653
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.65 E-value=0.003 Score=57.80 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
..++|.|+.|+|||++++.+++.+|..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 358999999999999999999999754
No 483
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.64 E-value=0.03 Score=61.27 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 45679999999999999999999877 555555555
No 484
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.63 E-value=0.006 Score=65.05 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=42.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc----------cch------hhHHHHHHHHHHHHhhcCCcEEEE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA----------PLG------AQAVTKIHEIFDWAKKSKKGLLLF 451 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~----------~~~------~~~~~~l~~~f~~a~~~~~~~vL~ 451 (635)
.++||.||+|+||||++++|...+...--.++..+.. .+. +...-....++..+.+.+ |.+|+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~-pD~Ii 241 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMR-PDRIL 241 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCC-CCeEE
Confidence 4699999999999999999998874321111111100 000 011123445666666665 78999
Q ss_pred ecCch
Q 006700 452 IDEAD 456 (635)
Q Consensus 452 iDEid 456 (635)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99995
No 485
>PRK05629 hypothetical protein; Validated
Probab=96.63 E-value=0.097 Score=55.40 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=103.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh------CCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCE 461 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l------~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~ 461 (635)
+.+||||+----.-.....|...+ ..+++.+++.++.- ..+.... ...-.....+|++++.+.+.
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~------~~l~~~~-t~slF~~~rlV~v~~~~~~~-- 77 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQ------GELLDAL-SPSLFGEDRVIVLTNMEQAG-- 77 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCH------HHHHHhh-CcCccCCceEEEEeChHhcC--
Confidence 468899865421222222233222 24566666655331 1222211 11122345689999876421
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHH---HHccccceEecCCCCHHHHHHHHHHHHHhhcCCC
Q 006700 462 RNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSA---ITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSD 538 (635)
Q Consensus 462 r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~---l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~ 538 (635)
.. ....++..+...+...++|+.++..+. ... .+.....++.+.+|...+....+..++.....
T Consensus 78 -------~~---~~~~l~~~l~~~~~~~~Lil~~~~~~~-~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~-- 144 (318)
T PRK05629 78 -------KE---PTDLALSAAVDPSPGIYLIIMHSGGGR-TKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGV-- 144 (318)
T ss_pred -------hh---HHHHHHHHHhCCCCCeEEEEEcCCcch-hhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCC--
Confidence 11 233444444444455555555543221 122 12344578899889999999999999887765
Q ss_pred CCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 539 EGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
.+++++++.|+..+.+ |+..+.+.++..+... ++.||.++|..++....
T Consensus 145 -----------------------~i~~~A~~~L~~~~g~----dl~~l~~EleKL~~~~-~~~It~e~V~~~v~~~~ 193 (318)
T PRK05629 145 -----------------------RPTPDVVHALLEGVGS----DLRELASAISQLVEDT-QGNVTVEKVRAYYVGVA 193 (318)
T ss_pred -----------------------CCCHHHHHHHHHHHCc----cHHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCc
Confidence 3899999999998865 6666666666554332 45799999999876543
No 486
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.62 E-value=0.0033 Score=73.70 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=30.0
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+-+.+..+.++..+.. .+.++|.|+||||||++++++...+
T Consensus 322 ~~l~~~Q~~Ai~~~~~-----------~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-----------HKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CCCCHHHHHHHHHHHh-----------CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456667776665421 1249999999999999999987765
No 487
>PHA00012 I assembly protein
Probab=96.62 E-value=0.0076 Score=62.67 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=39.9
Q ss_pred CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHc
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITD 507 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~ 507 (635)
..++|++|||+..+++.|........ .++ ..+... ...++-||++|..+..+|..++.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~--~vi-e~l~~h--Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQ--PVI-DWFLHA--RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcH--HHH-HHHHHh--ccCCceEEEEcCCHHHHhHHHHH
Confidence 45789999999999998886542222 122 222222 34456788899999999998874
No 488
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.016 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||++.|+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999764
No 489
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.61 E-value=0.0023 Score=62.32 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=22.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.-++|+||||+|||++++.|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998875
No 490
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.01 Score=69.72 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.++|.||||+||||-.-.++-+.+
T Consensus 67 vvii~getGsGKTTqlP~~lle~g 90 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEG 90 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhh
Confidence 499999999999998776665543
No 491
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.60 E-value=0.021 Score=69.06 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=51.2
Q ss_pred EEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCcHHHHccccceEecCCCCHHHHHH
Q 006700 448 LLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEERFK 525 (635)
Q Consensus 448 ~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--~l~~~l~~R~d~~i~~~~p~~~er~~ 525 (635)
.||+|||+..|+... .+.....|..|.+. + ....|.+|++|.+++ .|...|.+-|...|-|..-+..+-..
T Consensus 1142 IVVIIDE~AdLm~~~-----~kevE~lI~rLAqk-G-RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrt 1214 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-----GKKVEELIARLAQK-A-RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 1214 (1355)
T ss_pred EEEEEcChHHHHhhh-----hHHHHHHHHHHHHH-h-hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHH
Confidence 589999998775321 12222233333221 1 345788999999886 57777788888888999998888777
Q ss_pred HHHHH
Q 006700 526 LLKLY 530 (635)
Q Consensus 526 Il~~~ 530 (635)
||...
T Consensus 1215 ILd~~ 1219 (1355)
T PRK10263 1215 ILDQA 1219 (1355)
T ss_pred hcCCc
Confidence 77653
No 492
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.60 E-value=0.011 Score=57.95 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+|+|.|.||+|||+++..|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5899999999999999999754
No 493
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.59 E-value=0.007 Score=63.68 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC-cccchhhHHHHHHHHHHHH
Q 006700 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWA 441 (635)
Q Consensus 363 ~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~-~~~~~~~~~~~l~~~f~~a 441 (635)
.+++...|..++...-.+.. ....-++|+|+.|+|||++...|...+|.....++.+- +..... .-|..+
T Consensus 54 d~~~~~~l~~~lg~~L~~~~--~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~-------~~f~~a 124 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNY--TEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE-------HRFGLA 124 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCC--CceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC-------CCchhh
Confidence 45567777776665444322 22346889999999999999999988876543322221 111111 013333
Q ss_pred hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh----C-------CCCCCEEEEEEeCCCCC---CcHHHHc
Q 006700 442 KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT----G-------DQSRDIVLVLATNRPGD---LDSAITD 507 (635)
Q Consensus 442 ~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~----~-------~~~~~viiI~ttN~~~~---l~~~l~~ 507 (635)
.-.+ ..+++.||++.-. ......|..+...- . .....+.+|++||..-. .+.++.+
T Consensus 125 ~l~g-k~l~~~~E~~~~~---------~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~R 194 (304)
T TIGR01613 125 RLEG-KRAVIGDEVQKGY---------RDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKR 194 (304)
T ss_pred hhcC-CEEEEecCCCCCc---------cccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhhee
Confidence 3333 3588889986310 01123344443210 0 01124678899996544 3578999
Q ss_pred cccceEecC
Q 006700 508 RIDEVIEFP 516 (635)
Q Consensus 508 R~d~~i~~~ 516 (635)
|+ .+|.|+
T Consensus 195 R~-~vi~f~ 202 (304)
T TIGR01613 195 RL-RIIPFT 202 (304)
T ss_pred eE-EEEecc
Confidence 99 788775
No 494
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0081 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.6
Q ss_pred CCCc-eEEEecCCCCChHHHHHHHHHH
Q 006700 385 APFR-NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 385 ~p~~-~iLL~GppGtGKT~lA~~lA~~ 410 (635)
-|.+ -+|+.|+.|||||.+++.++.-
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHH
Confidence 4444 4778899999999999988753
No 495
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.028 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..+.|.||+|+|||||.+.|+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999963
No 496
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.58 E-value=0.017 Score=55.95 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.8
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCC
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD 422 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~ 422 (635)
.++.-++|+|+||+|||++++.|+..+ |...+.+++..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 344568999999999999999999887 33455555544
No 497
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.58 E-value=0.0061 Score=59.74 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
.+.|+|++||||||+++.|+. +|.+++
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i 30 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVI 30 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 589999999999999999998 776544
No 498
>PLN02840 tRNA dimethylallyltransferase
Probab=96.57 E-value=0.01 Score=64.47 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=28.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~ 420 (635)
..++|.||+|+|||+++..|+..++..++..+.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 358999999999999999999999887766543
No 499
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.57 E-value=0.0034 Score=59.04 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=29.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV 423 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~ 423 (635)
.|+|+|.||+||||+|++|.+.+ |.+.+.++|..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 58999999999999999999887 677887776544
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.012 Score=58.92 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-+-|.||+|||||||.+.||...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999865
Done!