Query 006700
Match_columns 635
No_of_seqs 580 out of 3153
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 100.0 2.7E-39 9.4E-44 349.8 23.6 239 351-616 174-424 (437)
2 4b4t_J 26S protease regulatory 100.0 2.5E-36 8.6E-41 321.7 29.5 242 351-619 141-394 (405)
3 4b4t_I 26S protease regulatory 100.0 1.4E-35 4.7E-40 316.7 21.6 241 351-618 175-427 (437)
4 4b4t_K 26S protease regulatory 100.0 3.2E-34 1.1E-38 309.7 28.4 239 351-616 165-416 (428)
5 4b4t_M 26S protease regulatory 100.0 5.7E-35 1.9E-39 315.8 22.0 246 351-623 174-431 (434)
6 4b4t_H 26S protease regulatory 100.0 2.7E-34 9.3E-39 309.5 24.7 242 351-619 202-455 (467)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.9E-28 6.3E-33 257.8 25.8 213 352-591 6-227 (322)
8 3eie_A Vacuolar protein sortin 100.0 1.1E-28 3.6E-33 259.6 21.1 241 351-618 11-302 (322)
9 2qp9_X Vacuolar protein sortin 100.0 2.3E-28 8E-33 260.4 22.3 242 351-619 44-336 (355)
10 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.4E-28 1.2E-32 247.0 21.8 244 354-623 2-258 (262)
11 3cf2_A TER ATPase, transitiona 100.0 2.1E-30 7.1E-35 298.6 4.1 240 351-617 470-746 (806)
12 3h4m_A Proteasome-activating n 100.0 1.8E-27 6.2E-32 245.1 24.8 244 351-621 10-265 (285)
13 3cf2_A TER ATPase, transitiona 100.0 2.5E-29 8.4E-34 289.7 11.6 244 351-622 197-467 (806)
14 1lv7_A FTSH; alpha/beta domain 100.0 2.3E-27 8E-32 240.9 24.5 238 352-616 6-254 (257)
15 2ce7_A Cell division protein F 100.0 1.7E-27 5.8E-32 261.3 23.2 239 352-617 10-259 (476)
16 2zan_A Vacuolar protein sortin 99.9 3.2E-27 1.1E-31 259.0 20.1 213 352-591 128-349 (444)
17 3d8b_A Fidgetin-like protein 1 99.9 2.8E-26 9.6E-31 244.6 26.0 240 352-618 78-338 (357)
18 3cf0_A Transitional endoplasmi 99.9 1.3E-27 4.6E-32 248.9 14.2 239 351-616 8-283 (301)
19 3hu3_A Transitional endoplasmi 99.9 4E-26 1.4E-30 252.2 20.7 242 353-622 199-467 (489)
20 3vfd_A Spastin; ATPase, microt 99.9 1.6E-25 5.4E-30 241.5 24.7 237 353-616 110-367 (389)
21 3b9p_A CG5977-PA, isoform A; A 99.9 2.2E-25 7.5E-30 231.0 24.1 238 352-616 15-274 (297)
22 2dhr_A FTSH; AAA+ protein, hex 99.9 9.3E-26 3.2E-30 248.8 19.4 239 353-618 26-275 (499)
23 1ixz_A ATP-dependent metallopr 99.9 3.7E-25 1.3E-29 224.3 21.6 234 351-611 9-253 (254)
24 2x8a_A Nuclear valosin-contain 99.9 9.9E-26 3.4E-30 231.5 17.0 243 352-619 4-269 (274)
25 2r62_A Cell division protease 99.9 5.7E-28 1.9E-32 246.8 -0.6 243 352-621 5-260 (268)
26 1iy2_A ATP-dependent metallopr 99.9 3.1E-24 1.1E-28 220.7 24.3 232 353-611 35-277 (278)
27 1qvr_A CLPB protein; coiled co 99.9 8.5E-24 2.9E-28 249.7 29.5 357 154-588 403-813 (854)
28 3uk6_A RUVB-like 2; hexameric 99.9 5.7E-21 1.9E-25 203.7 23.5 226 350-616 36-332 (368)
29 3t15_A Ribulose bisphosphate c 99.9 8.2E-22 2.8E-26 204.3 16.2 196 358-585 7-222 (293)
30 3pfi_A Holliday junction ATP-d 99.9 1.3E-20 4.4E-25 198.7 25.2 215 354-614 25-254 (338)
31 2c9o_A RUVB-like 1; hexameric 99.9 6.7E-21 2.3E-25 209.6 21.7 236 349-616 28-439 (456)
32 1ypw_A Transitional endoplasmi 99.9 8.3E-24 2.8E-28 247.3 -2.6 219 351-596 470-700 (806)
33 3syl_A Protein CBBX; photosynt 99.9 2.1E-21 7.1E-26 202.0 15.2 225 359-615 32-287 (309)
34 1ofh_A ATP-dependent HSL prote 99.8 5.4E-21 1.9E-25 198.4 15.5 241 358-614 15-299 (310)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 6E-20 2.1E-24 192.1 22.6 217 353-614 7-238 (324)
36 3pxi_A Negative regulator of g 99.8 6.8E-20 2.3E-24 213.9 21.0 202 358-588 491-718 (758)
37 2chg_A Replication factor C sm 99.8 2.2E-19 7.5E-24 175.7 21.5 203 353-612 12-224 (226)
38 3u61_B DNA polymerase accessor 99.8 2.5E-20 8.5E-25 195.5 15.6 211 353-613 21-236 (324)
39 1ypw_A Transitional endoplasmi 99.8 6.4E-20 2.2E-24 214.5 16.2 238 352-617 198-462 (806)
40 3pvs_A Replication-associated 99.8 2.2E-19 7.5E-24 196.4 19.2 210 354-614 22-244 (447)
41 1d2n_A N-ethylmaleimide-sensit 99.8 2E-19 6.8E-24 184.0 15.0 206 358-596 33-248 (272)
42 4fcw_A Chaperone protein CLPB; 99.8 9E-19 3.1E-23 182.1 18.1 208 358-590 17-274 (311)
43 2r44_A Uncharacterized protein 99.8 9.6E-19 3.3E-23 184.0 18.4 239 356-616 25-299 (331)
44 3hws_A ATP-dependent CLP prote 99.8 8.6E-19 2.9E-23 187.0 17.5 236 359-610 16-345 (363)
45 1njg_A DNA polymerase III subu 99.8 5.7E-18 2E-22 167.6 22.1 209 353-611 18-248 (250)
46 2v1u_A Cell division control p 99.8 3.9E-18 1.3E-22 181.9 21.5 229 353-616 14-278 (387)
47 1r6b_X CLPA protein; AAA+, N-t 99.8 1.6E-18 5.4E-23 202.4 18.7 202 358-588 458-709 (758)
48 2chq_A Replication factor C sm 99.8 1.6E-18 5.3E-23 180.4 16.6 207 353-612 12-224 (319)
49 1sxj_D Activator 1 41 kDa subu 99.8 1.8E-18 6E-23 182.9 16.2 208 353-612 32-261 (353)
50 1iqp_A RFCS; clamp loader, ext 99.8 2.9E-18 9.8E-23 179.0 16.5 202 353-611 20-231 (327)
51 1um8_A ATP-dependent CLP prote 99.8 2.4E-18 8.2E-23 184.4 16.1 238 358-611 21-362 (376)
52 3m6a_A ATP-dependent protease 99.8 2.9E-18 9.9E-23 192.2 17.2 230 357-614 80-341 (543)
53 1g8p_A Magnesium-chelatase 38 99.8 1.4E-17 4.8E-22 175.8 21.0 249 351-617 17-325 (350)
54 2bjv_A PSP operon transcriptio 99.8 2.7E-18 9.2E-23 174.8 14.9 217 355-607 3-250 (265)
55 1in4_A RUVB, holliday junction 99.8 6.2E-17 2.1E-21 170.7 25.6 216 354-615 21-251 (334)
56 3bos_A Putative DNA replicatio 99.8 1.5E-17 5.2E-22 165.3 18.9 208 352-612 22-241 (242)
57 1sxj_B Activator 1 37 kDa subu 99.8 1.9E-17 6.4E-22 172.5 20.1 204 353-613 16-230 (323)
58 1sxj_A Activator 1 95 kDa subu 99.8 3E-18 1E-22 191.2 14.6 219 353-613 34-273 (516)
59 1jr3_A DNA polymerase III subu 99.8 3.6E-17 1.2E-21 174.1 22.0 209 353-611 11-241 (373)
60 1l8q_A Chromosomal replication 99.7 1.7E-17 6E-22 173.9 17.6 224 351-616 4-242 (324)
61 2qby_B CDC6 homolog 3, cell di 99.7 3E-17 1E-21 175.5 19.7 220 355-616 17-272 (384)
62 1ojl_A Transcriptional regulat 99.7 1.1E-17 3.7E-22 174.1 15.7 211 358-608 2-246 (304)
63 1fnn_A CDC6P, cell division co 99.7 3E-16 1E-20 167.7 25.5 225 353-615 12-275 (389)
64 2z4s_A Chromosomal replication 99.7 6.1E-17 2.1E-21 177.0 19.4 223 350-615 97-333 (440)
65 1g41_A Heat shock protein HSLU 99.7 6.2E-17 2.1E-21 175.2 18.9 241 358-614 15-433 (444)
66 3te6_A Regulatory protein SIR3 99.7 5.8E-17 2E-21 168.6 16.3 216 385-614 43-315 (318)
67 2qby_A CDC6 homolog 1, cell di 99.7 2.4E-16 8.2E-21 167.8 20.9 229 352-616 14-274 (386)
68 1sxj_C Activator 1 40 kDa subu 99.7 8.6E-17 2.9E-21 169.9 17.0 205 353-612 20-237 (340)
69 1jbk_A CLPB protein; beta barr 99.7 1.3E-17 4.4E-22 159.2 9.6 159 354-527 18-194 (195)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 1.3E-16 4.3E-21 186.3 17.9 225 355-615 183-434 (758)
71 1sxj_E Activator 1 40 kDa subu 99.7 3.6E-16 1.2E-20 165.5 18.4 192 353-596 9-243 (354)
72 3pxg_A Negative regulator of g 99.7 2.2E-16 7.7E-21 173.9 16.6 188 354-592 176-383 (468)
73 1qvr_A CLPB protein; coiled co 99.7 6.7E-16 2.3E-20 182.2 16.2 206 354-595 166-393 (854)
74 2p65_A Hypothetical protein PF 99.6 4E-16 1.4E-20 148.5 10.5 152 354-519 18-187 (187)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.3E-15 4.5E-20 168.1 15.6 229 358-608 22-280 (500)
76 1ny5_A Transcriptional regulat 99.6 1.6E-16 5.3E-21 171.0 6.5 212 357-609 136-382 (387)
77 1a5t_A Delta prime, HOLB; zinc 99.6 3.1E-15 1.1E-19 157.7 16.2 158 385-586 22-204 (334)
78 3f9v_A Minichromosome maintena 99.6 3.1E-16 1.1E-20 177.3 7.0 241 358-616 295-589 (595)
79 3pxi_A Negative regulator of g 99.6 7.2E-15 2.5E-19 171.4 18.3 190 354-594 176-385 (758)
80 3dzd_A Transcriptional regulat 99.6 2.7E-15 9.3E-20 160.1 12.1 206 358-603 129-367 (368)
81 3n70_A Transport activator; si 99.6 5.7E-15 1.9E-19 136.5 9.7 131 359-517 2-143 (145)
82 3co5_A Putative two-component 99.5 6.7E-15 2.3E-19 135.7 7.1 131 359-517 5-141 (143)
83 1w5s_A Origin recognition comp 99.5 3.2E-13 1.1E-17 145.4 20.6 232 354-614 18-293 (412)
84 2gno_A DNA polymerase III, gam 99.5 9E-14 3.1E-18 144.4 13.3 143 362-531 1-152 (305)
85 3k1j_A LON protease, ATP-depen 99.5 3.7E-13 1.3E-17 152.9 15.8 224 351-613 34-374 (604)
86 4akg_A Glutathione S-transfera 99.2 3.4E-10 1.1E-14 144.8 22.5 139 388-535 1268-1435(2695)
87 3f8t_A Predicted ATPase involv 99.2 1.5E-10 5.1E-15 124.7 15.2 227 360-624 215-492 (506)
88 3ec2_A DNA replication protein 99.1 9.5E-11 3.3E-15 111.6 9.2 132 354-499 6-144 (180)
89 1jr3_D DNA polymerase III, del 99.1 4.3E-10 1.5E-14 118.5 14.6 180 387-615 18-210 (343)
90 2qen_A Walker-type ATPase; unk 99.0 1.6E-08 5.3E-13 105.7 19.0 185 358-587 12-246 (350)
91 2kjq_A DNAA-related protein; s 98.9 2.1E-09 7.2E-14 99.5 9.6 106 386-516 35-146 (149)
92 1tue_A Replication protein E1; 98.9 2.3E-09 7.8E-14 103.5 9.9 108 388-518 59-179 (212)
93 2w58_A DNAI, primosome compone 98.9 1.1E-09 3.9E-14 106.0 7.6 101 354-458 21-127 (202)
94 2fna_A Conserved hypothetical 98.9 4E-08 1.4E-12 102.8 18.5 157 357-534 12-225 (357)
95 4akg_A Glutathione S-transfera 98.9 1E-07 3.6E-12 122.2 24.2 147 358-528 623-790 (2695)
96 2r2a_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 100.6 7.3 127 388-521 6-156 (199)
97 3vkg_A Dynein heavy chain, cyt 98.8 6E-08 2E-12 125.0 16.4 138 389-535 1306-1473(3245)
98 2qgz_A Helicase loader, putati 98.7 9.7E-09 3.3E-13 106.6 4.4 100 354-458 120-226 (308)
99 3kw6_A 26S protease regulatory 98.6 5.7E-08 2E-12 79.4 7.7 75 516-616 1-75 (78)
100 1u0j_A DNA replication protein 98.6 2.1E-07 7.1E-12 93.8 12.1 117 387-529 104-249 (267)
101 3cmw_A Protein RECA, recombina 98.6 1E-07 3.5E-12 117.4 9.6 145 351-497 1013-1217(1706)
102 2vhj_A Ntpase P4, P4; non- hyd 98.5 5.2E-08 1.8E-12 100.6 4.8 110 388-503 124-240 (331)
103 2krk_A 26S protease regulatory 98.5 1.5E-07 5.2E-12 78.4 6.2 77 514-616 7-83 (86)
104 3vkg_A Dynein heavy chain, cyt 98.4 3.1E-06 1.1E-10 109.4 16.9 145 359-527 583-749 (3245)
105 1ye8_A Protein THEP1, hypothet 98.3 2.6E-06 8.9E-11 81.0 9.9 25 389-413 2-26 (178)
106 3vlf_B 26S protease regulatory 98.2 9.3E-07 3.2E-11 73.9 5.3 79 519-623 2-80 (88)
107 3aji_B S6C, proteasome (prosom 98.1 2.3E-06 7.9E-11 70.6 5.6 75 519-619 2-76 (83)
108 1z6t_A APAF-1, apoptotic prote 97.9 5.9E-05 2E-09 84.8 13.4 46 358-409 124-169 (591)
109 2orw_A Thymidine kinase; TMTK, 97.8 6.2E-06 2.1E-10 78.8 3.0 112 389-517 5-138 (184)
110 3cmu_A Protein RECA, recombina 97.8 2.3E-05 7.7E-10 97.9 8.7 76 385-461 1425-1520(2050)
111 1svm_A Large T antigen; AAA+ f 97.8 1.3E-05 4.4E-10 85.2 4.1 99 385-501 167-267 (377)
112 2r8r_A Sensor protein; KDPD, P 97.7 0.00018 6E-09 70.6 10.8 119 389-521 8-168 (228)
113 2b8t_A Thymidine kinase; deoxy 97.7 0.00012 4.2E-09 71.9 9.7 113 389-516 14-150 (223)
114 1g5t_A COB(I)alamin adenosyltr 97.7 0.00015 5E-09 69.6 9.4 117 388-516 29-178 (196)
115 2iut_A DNA translocase FTSK; n 97.7 0.00094 3.2E-08 74.0 17.2 76 446-528 343-420 (574)
116 2dzn_B 26S protease regulatory 97.6 1.3E-05 4.4E-10 66.0 1.3 68 522-615 2-69 (82)
117 2p5t_B PEZT; postsegregational 97.6 7.3E-05 2.5E-09 74.9 6.3 60 364-423 9-68 (253)
118 2cvh_A DNA repair and recombin 97.5 0.00017 5.7E-09 69.9 8.4 35 388-422 21-55 (220)
119 1gvn_B Zeta; postsegregational 97.5 0.00012 4.2E-09 74.7 7.3 57 364-420 10-66 (287)
120 2i3b_A HCR-ntpase, human cance 97.5 0.00014 4.7E-09 69.7 7.0 23 389-411 3-25 (189)
121 3sfz_A APAF-1, apoptotic pepti 97.5 0.00075 2.6E-08 82.0 15.2 146 357-531 123-299 (1249)
122 3upu_A ATP-dependent DNA helic 97.5 0.00036 1.2E-08 76.1 11.0 48 356-411 22-69 (459)
123 3trf_A Shikimate kinase, SK; a 97.4 7.5E-05 2.6E-09 70.5 4.3 32 387-418 5-36 (185)
124 2ius_A DNA translocase FTSK; n 97.4 0.0012 4E-08 72.7 13.9 76 447-529 298-375 (512)
125 2ehv_A Hypothetical protein PH 97.4 0.00036 1.2E-08 68.8 8.8 21 388-408 31-51 (251)
126 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00046 1.6E-08 67.1 9.4 24 388-411 24-47 (235)
127 1qhx_A CPT, protein (chloramph 97.4 0.0001 3.6E-09 69.0 4.5 32 388-419 4-35 (178)
128 2a5y_B CED-4; apoptosis; HET: 97.4 0.0014 4.7E-08 73.2 14.0 143 361-530 131-305 (549)
129 1xp8_A RECA protein, recombina 97.3 0.00066 2.3E-08 71.7 10.4 74 387-460 74-166 (366)
130 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4.2E-09 70.2 4.4 32 387-418 25-56 (199)
131 3hr8_A Protein RECA; alpha and 97.3 0.00054 1.8E-08 72.1 9.5 73 388-460 62-153 (356)
132 2zr9_A Protein RECA, recombina 97.3 0.00047 1.6E-08 72.5 8.7 74 387-460 61-153 (349)
133 1n0w_A DNA repair protein RAD5 97.3 0.00089 3.1E-08 65.7 10.2 23 388-410 25-47 (243)
134 3cmu_A Protein RECA, recombina 97.2 0.00065 2.2E-08 85.1 10.2 77 386-462 1080-1175(2050)
135 1u94_A RECA protein, recombina 97.2 0.00062 2.1E-08 71.7 8.7 74 387-460 63-155 (356)
136 3iij_A Coilin-interacting nucl 97.2 0.00018 6.2E-09 67.6 4.2 31 388-418 12-42 (180)
137 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.2E-09 66.2 4.4 30 389-418 3-32 (173)
138 3e1s_A Exodeoxyribonuclease V, 97.2 0.00028 9.5E-09 79.2 6.1 41 360-411 188-228 (574)
139 1zuh_A Shikimate kinase; alpha 97.2 0.0002 6.8E-09 66.5 4.2 32 387-418 7-38 (168)
140 2iyv_A Shikimate kinase, SK; t 97.2 0.0002 6.8E-09 67.5 4.1 30 389-418 4-33 (184)
141 2cdn_A Adenylate kinase; phosp 97.2 0.00027 9.3E-09 67.7 4.7 32 387-418 20-51 (201)
142 1via_A Shikimate kinase; struc 97.2 0.0002 7E-09 67.0 3.8 29 389-417 6-34 (175)
143 2z43_A DNA repair and recombin 97.1 0.00087 3E-08 69.6 8.5 25 387-411 107-131 (324)
144 2rhm_A Putative kinase; P-loop 97.1 0.00027 9.3E-09 66.9 4.3 31 387-417 5-35 (193)
145 3io5_A Recombination and repai 97.1 0.00074 2.5E-08 69.4 7.5 77 384-460 25-125 (333)
146 1y63_A LMAJ004144AAA protein; 97.1 0.00025 8.5E-09 67.2 3.7 31 388-418 11-42 (184)
147 4a74_A DNA repair and recombin 97.1 0.0019 6.5E-08 62.7 10.1 24 388-411 26-49 (231)
148 1kag_A SKI, shikimate kinase I 97.1 0.00032 1.1E-08 65.3 4.0 29 388-416 5-33 (173)
149 3dm5_A SRP54, signal recogniti 97.1 0.0029 9.9E-08 68.2 11.8 72 386-458 99-194 (443)
150 3jvv_A Twitching mobility prot 97.1 0.00087 3E-08 70.5 7.6 24 388-411 124-147 (356)
151 3lw7_A Adenylate kinase relate 97.1 0.00028 9.7E-09 65.2 3.5 29 389-418 3-31 (179)
152 2c95_A Adenylate kinase 1; tra 97.0 0.00035 1.2E-08 66.3 4.1 31 388-418 10-40 (196)
153 1e6c_A Shikimate kinase; phosp 97.0 0.00036 1.2E-08 64.8 3.9 29 389-417 4-32 (173)
154 2fz4_A DNA repair protein RAD2 97.0 0.0012 4E-08 65.4 7.8 30 389-418 110-139 (237)
155 1tev_A UMP-CMP kinase; ploop, 97.0 0.00035 1.2E-08 66.0 3.8 30 388-417 4-33 (196)
156 1aky_A Adenylate kinase; ATP:A 97.0 0.00042 1.4E-08 67.5 4.3 32 387-418 4-35 (220)
157 3t61_A Gluconokinase; PSI-biol 97.0 0.00048 1.6E-08 66.0 4.6 31 387-417 18-48 (202)
158 1zp6_A Hypothetical protein AT 97.0 0.00029 1E-08 66.6 3.0 34 388-421 10-43 (191)
159 3cm0_A Adenylate kinase; ATP-b 97.0 0.00036 1.2E-08 65.7 3.5 30 389-418 6-35 (186)
160 1v5w_A DMC1, meiotic recombina 97.0 0.0027 9.4E-08 66.4 10.4 23 388-410 123-145 (343)
161 2vli_A Antibiotic resistance p 97.0 0.00039 1.3E-08 65.2 3.5 29 388-416 6-34 (183)
162 1ukz_A Uridylate kinase; trans 96.9 0.00052 1.8E-08 65.7 4.3 32 387-418 15-46 (203)
163 2ze6_A Isopentenyl transferase 96.9 0.00051 1.7E-08 68.8 4.3 31 389-419 3-33 (253)
164 2bwj_A Adenylate kinase 5; pho 96.9 0.00047 1.6E-08 65.5 3.8 31 388-418 13-43 (199)
165 3dl0_A Adenylate kinase; phosp 96.9 0.00049 1.7E-08 66.6 4.0 30 389-418 2-31 (216)
166 2pt5_A Shikimate kinase, SK; a 96.9 0.00054 1.8E-08 63.4 4.1 30 389-418 2-31 (168)
167 1knq_A Gluconate kinase; ALFA/ 96.9 0.00066 2.3E-08 63.3 4.7 31 387-417 8-38 (175)
168 3be4_A Adenylate kinase; malar 96.9 0.00045 1.5E-08 67.2 3.6 31 388-418 6-36 (217)
169 1kht_A Adenylate kinase; phosp 96.9 0.00042 1.4E-08 65.3 3.3 25 388-412 4-28 (192)
170 1ly1_A Polynucleotide kinase; 96.9 0.0004 1.4E-08 64.8 3.0 29 388-416 3-32 (181)
171 3umf_A Adenylate kinase; rossm 96.9 0.00056 1.9E-08 66.9 4.2 31 387-417 29-59 (217)
172 1zak_A Adenylate kinase; ATP:A 96.9 0.00049 1.7E-08 67.1 3.8 30 388-417 6-35 (222)
173 3fb4_A Adenylate kinase; psych 96.9 0.00055 1.9E-08 66.3 4.0 30 389-418 2-31 (216)
174 1ak2_A Adenylate kinase isoenz 96.9 0.00062 2.1E-08 67.0 4.5 31 388-418 17-47 (233)
175 1zd8_A GTP:AMP phosphotransfer 96.9 0.0005 1.7E-08 67.3 3.7 31 388-418 8-38 (227)
176 1vt4_I APAF-1 related killer D 96.9 0.012 4.2E-07 69.4 15.7 44 360-410 130-173 (1221)
177 3tlx_A Adenylate kinase 2; str 96.9 0.00059 2E-08 67.8 4.1 33 386-418 28-60 (243)
178 1qf9_A UMP/CMP kinase, protein 96.9 0.00052 1.8E-08 64.7 3.6 31 388-418 7-37 (194)
179 3sr0_A Adenylate kinase; phosp 96.9 0.00059 2E-08 66.2 3.9 29 389-417 2-30 (206)
180 2dr3_A UPF0273 protein PH0284; 96.8 0.0034 1.2E-07 61.5 9.2 24 388-411 24-47 (247)
181 1pzn_A RAD51, DNA repair and r 96.8 0.0048 1.7E-07 64.7 10.9 25 387-411 131-155 (349)
182 2pez_A Bifunctional 3'-phospho 96.8 0.00075 2.6E-08 63.3 4.1 34 387-420 5-41 (179)
183 4eun_A Thermoresistant glucoki 96.8 0.00087 3E-08 64.2 4.3 30 387-416 29-58 (200)
184 1qde_A EIF4A, translation init 96.7 0.0061 2.1E-07 59.0 10.2 16 388-403 52-67 (224)
185 2eyu_A Twitching motility prot 96.7 0.0013 4.3E-08 66.2 5.3 25 387-411 25-49 (261)
186 1e4v_A Adenylate kinase; trans 96.7 0.00086 2.9E-08 65.0 4.0 30 389-418 2-31 (214)
187 2ged_A SR-beta, signal recogni 96.7 0.0045 1.6E-07 58.1 8.8 46 364-411 27-72 (193)
188 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0018 6E-08 67.5 6.1 68 389-457 173-251 (330)
189 2zts_A Putative uncharacterize 96.6 0.0097 3.3E-07 58.3 11.1 23 388-410 31-53 (251)
190 3kl4_A SRP54, signal recogniti 96.6 0.016 5.4E-07 62.4 13.4 34 386-419 96-132 (433)
191 3cmw_A Protein RECA, recombina 96.6 0.0029 1E-07 78.4 8.6 76 386-461 33-127 (1706)
192 2i1q_A DNA repair and recombin 96.6 0.0035 1.2E-07 64.8 7.9 23 388-410 99-121 (322)
193 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0014 4.7E-08 65.7 4.7 33 388-420 5-40 (260)
194 1t6n_A Probable ATP-dependent 96.6 0.034 1.1E-06 53.5 14.4 23 388-410 52-74 (220)
195 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.3E-08 62.7 4.0 29 389-417 2-30 (205)
196 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4E-08 64.6 3.8 30 389-418 2-31 (223)
197 3uie_A Adenylyl-sulfate kinase 96.6 0.0015 5E-08 62.6 4.3 26 386-411 24-49 (200)
198 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.9E-08 63.7 4.3 29 389-417 7-35 (227)
199 3lda_A DNA repair protein RAD5 96.5 0.0063 2.1E-07 65.0 9.5 23 388-410 179-201 (400)
200 2pbr_A DTMP kinase, thymidylat 96.5 0.0014 4.9E-08 61.7 4.1 31 389-419 2-35 (195)
201 1nlf_A Regulatory protein REPA 96.5 0.0056 1.9E-07 61.8 8.7 24 388-411 31-54 (279)
202 1vma_A Cell division protein F 96.5 0.01 3.5E-07 61.0 10.7 26 386-411 103-128 (306)
203 2wwf_A Thymidilate kinase, put 96.5 0.0013 4.5E-08 63.1 3.7 27 388-414 11-37 (212)
204 1nks_A Adenylate kinase; therm 96.5 0.00085 2.9E-08 63.2 2.3 24 389-412 3-26 (194)
205 2z0h_A DTMP kinase, thymidylat 96.5 0.0024 8E-08 60.5 5.4 29 390-418 3-34 (197)
206 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.2E-08 63.1 3.5 29 389-418 3-31 (204)
207 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.9E-08 63.0 3.9 26 388-413 10-35 (215)
208 3crm_A TRNA delta(2)-isopenten 96.5 0.0013 4.6E-08 67.9 3.7 32 388-419 6-37 (323)
209 2v54_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 62.3 3.6 31 388-418 5-36 (204)
210 1cr0_A DNA primase/helicase; R 96.5 0.007 2.4E-07 61.6 8.9 24 388-411 36-59 (296)
211 2v3c_C SRP54, signal recogniti 96.5 0.0088 3E-07 64.5 10.0 35 386-420 98-135 (432)
212 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00092 3.1E-08 69.9 2.1 30 388-417 25-54 (359)
213 3r20_A Cytidylate kinase; stru 96.4 0.0018 6.2E-08 63.9 4.1 30 388-417 10-39 (233)
214 2r6a_A DNAB helicase, replicat 96.4 0.0072 2.5E-07 65.7 9.1 32 388-419 204-239 (454)
215 1w36_D RECD, exodeoxyribonucle 96.4 0.0062 2.1E-07 68.7 8.9 23 389-411 166-188 (608)
216 3fe2_A Probable ATP-dependent 96.4 0.01 3.6E-07 58.3 9.5 18 388-405 67-84 (242)
217 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.7E-08 63.4 4.6 29 388-416 28-56 (246)
218 3nwj_A ATSK2; P loop, shikimat 96.4 0.0019 6.6E-08 64.4 3.9 30 389-418 50-79 (250)
219 2plr_A DTMP kinase, probable t 96.4 0.002 6.9E-08 61.6 3.9 27 388-414 5-31 (213)
220 1jjv_A Dephospho-COA kinase; P 96.4 0.0017 5.9E-08 62.2 3.4 28 389-417 4-31 (206)
221 2px0_A Flagellar biosynthesis 96.3 0.018 6.1E-07 58.9 11.1 35 386-420 104-142 (296)
222 1nrj_B SR-beta, signal recogni 96.3 0.0077 2.6E-07 57.8 8.0 25 387-411 12-36 (218)
223 3iuy_A Probable ATP-dependent 96.3 0.012 4.2E-07 57.0 9.5 18 388-405 58-75 (228)
224 4gp7_A Metallophosphoesterase; 96.3 0.0093 3.2E-07 55.6 8.2 19 388-406 10-28 (171)
225 3ake_A Cytidylate kinase; CMP 96.3 0.0022 7.6E-08 61.2 4.0 30 389-418 4-33 (208)
226 3ber_A Probable ATP-dependent 96.3 0.013 4.4E-07 58.1 9.7 50 353-405 41-98 (249)
227 1xx6_A Thymidine kinase; NESG, 96.3 0.0073 2.5E-07 57.7 7.5 31 388-418 9-42 (191)
228 1w4r_A Thymidine kinase; type 96.3 0.003 1E-07 60.4 4.7 32 388-419 21-55 (195)
229 2grj_A Dephospho-COA kinase; T 96.3 0.0023 7.7E-08 61.3 3.8 30 389-418 14-43 (192)
230 3zvl_A Bifunctional polynucleo 96.3 0.0041 1.4E-07 66.9 6.1 31 387-417 258-288 (416)
231 3llm_A ATP-dependent RNA helic 96.3 0.0062 2.1E-07 59.8 6.9 21 388-408 77-97 (235)
232 2qor_A Guanylate kinase; phosp 96.2 0.0026 8.9E-08 61.1 4.0 28 385-412 10-37 (204)
233 1uj2_A Uridine-cytidine kinase 96.2 0.0022 7.7E-08 63.8 3.6 28 388-415 23-50 (252)
234 1uf9_A TT1252 protein; P-loop, 96.2 0.0027 9.1E-08 60.4 3.9 29 388-417 9-37 (203)
235 4e22_A Cytidylate kinase; P-lo 96.2 0.0033 1.1E-07 62.7 4.4 29 388-416 28-56 (252)
236 2pl3_A Probable ATP-dependent 96.2 0.028 9.4E-07 54.8 11.0 18 388-405 63-80 (236)
237 3lxw_A GTPase IMAP family memb 96.1 0.025 8.4E-07 56.1 10.5 23 388-410 22-44 (247)
238 3bor_A Human initiation factor 96.1 0.013 4.3E-07 57.5 8.3 18 388-405 68-85 (237)
239 2oxc_A Probable ATP-dependent 96.1 0.027 9.1E-07 54.9 10.6 17 388-404 62-78 (230)
240 2ewv_A Twitching motility prot 96.1 0.0037 1.3E-07 66.1 4.7 26 386-411 135-160 (372)
241 3bh0_A DNAB-like replicative h 96.1 0.012 4E-07 60.7 8.3 24 388-411 69-92 (315)
242 3c8u_A Fructokinase; YP_612366 96.1 0.0039 1.3E-07 60.0 4.4 26 387-412 22-47 (208)
243 3a8t_A Adenylate isopentenyltr 96.1 0.0025 8.4E-08 66.2 3.1 31 388-418 41-71 (339)
244 2gxq_A Heat resistant RNA depe 96.1 0.0084 2.9E-07 57.1 6.7 18 388-405 39-56 (207)
245 3b6e_A Interferon-induced heli 96.1 0.016 5.5E-07 55.3 8.7 40 360-410 32-71 (216)
246 3fmo_B ATP-dependent RNA helic 96.1 0.024 8.1E-07 57.9 10.4 52 353-404 90-148 (300)
247 4i1u_A Dephospho-COA kinase; s 96.1 0.009 3.1E-07 57.9 6.8 129 389-529 11-152 (210)
248 1vec_A ATP-dependent RNA helic 96.1 0.0087 3E-07 57.0 6.7 18 388-405 41-58 (206)
249 2q6t_A DNAB replication FORK h 96.1 0.013 4.3E-07 63.6 8.7 32 388-419 201-236 (444)
250 1s2m_A Putative ATP-dependent 96.0 0.034 1.1E-06 58.5 11.7 21 388-408 59-79 (400)
251 3exa_A TRNA delta(2)-isopenten 96.0 0.014 4.6E-07 60.0 8.2 27 389-415 5-31 (322)
252 3tau_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 60.5 3.7 26 387-412 8-33 (208)
253 3foz_A TRNA delta(2)-isopenten 96.0 0.0042 1.5E-07 63.7 4.4 31 388-418 11-41 (316)
254 2h92_A Cytidylate kinase; ross 96.0 0.0038 1.3E-07 60.3 3.9 30 389-418 5-34 (219)
255 1kgd_A CASK, peripheral plasma 96.0 0.0041 1.4E-07 58.5 4.0 25 388-412 6-30 (180)
256 1ex7_A Guanylate kinase; subst 96.0 0.0046 1.6E-07 58.8 4.2 25 389-413 3-27 (186)
257 2yvu_A Probable adenylyl-sulfa 96.0 0.0043 1.5E-07 58.4 4.0 27 386-412 12-38 (186)
258 1q3t_A Cytidylate kinase; nucl 96.0 0.0046 1.6E-07 60.8 4.4 31 387-417 16-46 (236)
259 3ney_A 55 kDa erythrocyte memb 96.0 0.017 5.6E-07 55.4 8.1 25 388-412 20-44 (197)
260 1vht_A Dephospho-COA kinase; s 96.0 0.0038 1.3E-07 60.4 3.7 30 388-418 5-34 (218)
261 1rz3_A Hypothetical protein rb 96.0 0.01 3.4E-07 56.8 6.6 32 387-418 22-56 (201)
262 2qt1_A Nicotinamide riboside k 96.0 0.0032 1.1E-07 60.4 3.0 32 387-418 21-53 (207)
263 3def_A T7I23.11 protein; chlor 95.9 0.028 9.7E-07 56.0 10.1 44 364-410 16-59 (262)
264 2j41_A Guanylate kinase; GMP, 95.9 0.0041 1.4E-07 59.3 3.6 24 388-411 7-30 (207)
265 1kao_A RAP2A; GTP-binding prot 95.9 0.023 8E-07 51.2 8.6 22 389-410 5-26 (167)
266 3thx_A DNA mismatch repair pro 95.9 0.027 9.3E-07 66.3 11.1 22 388-409 663-684 (934)
267 2bdt_A BH3686; alpha-beta prot 95.9 0.0046 1.6E-07 58.3 3.7 25 389-413 4-28 (189)
268 1m7g_A Adenylylsulfate kinase; 95.9 0.0043 1.5E-07 59.8 3.5 34 387-420 25-62 (211)
269 1ltq_A Polynucleotide kinase; 95.8 0.0038 1.3E-07 63.5 3.2 29 388-416 3-32 (301)
270 2f6r_A COA synthase, bifunctio 95.8 0.0047 1.6E-07 62.6 3.8 30 388-418 76-105 (281)
271 3eph_A TRNA isopentenyltransfe 95.8 0.017 5.9E-07 61.3 8.2 29 388-416 3-31 (409)
272 3thx_B DNA mismatch repair pro 95.8 0.02 6.9E-07 67.3 9.4 105 387-500 673-798 (918)
273 3tr0_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 58.1 4.0 25 388-412 8-32 (205)
274 2axn_A 6-phosphofructo-2-kinas 95.8 0.028 9.4E-07 62.1 9.9 25 388-412 36-60 (520)
275 3pey_A ATP-dependent RNA helic 95.8 0.036 1.2E-06 57.8 10.5 20 388-407 45-64 (395)
276 3asz_A Uridine kinase; cytidin 95.7 0.0049 1.7E-07 59.2 3.3 30 388-417 7-38 (211)
277 3vkw_A Replicase large subunit 95.7 0.027 9.2E-07 60.6 9.3 25 385-409 159-183 (446)
278 1zu4_A FTSY; GTPase, signal re 95.7 0.027 9.1E-07 58.3 9.0 27 385-411 103-129 (320)
279 2dyk_A GTP-binding protein; GT 95.7 0.028 9.7E-07 50.5 8.2 23 388-410 2-24 (161)
280 3d3q_A TRNA delta(2)-isopenten 95.7 0.0053 1.8E-07 63.9 3.6 29 389-417 9-37 (340)
281 1u8z_A RAS-related protein RAL 95.7 0.037 1.3E-06 49.8 9.0 23 388-410 5-27 (168)
282 1tf7_A KAIC; homohexamer, hexa 95.7 0.014 4.8E-07 64.6 7.2 50 447-501 139-188 (525)
283 3a00_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 57.7 3.5 24 389-412 3-26 (186)
284 2j9r_A Thymidine kinase; TK1, 95.7 0.02 7E-07 55.4 7.4 31 389-419 30-63 (214)
285 1p9r_A General secretion pathw 95.7 0.03 1E-06 60.0 9.5 49 355-412 144-192 (418)
286 1lvg_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 58.4 3.5 25 388-412 5-29 (198)
287 2j37_W Signal recognition part 95.6 0.033 1.1E-06 61.1 9.8 35 386-420 100-137 (504)
288 3fdi_A Uncharacterized protein 95.6 0.0069 2.4E-07 58.2 3.9 29 389-417 8-36 (201)
289 4g1u_C Hemin import ATP-bindin 95.6 0.023 7.9E-07 57.1 7.9 24 388-411 38-61 (266)
290 3bc1_A RAS-related protein RAB 95.6 0.026 8.9E-07 52.4 7.8 23 388-410 12-34 (195)
291 1r8s_A ADP-ribosylation factor 95.6 0.036 1.2E-06 50.0 8.6 22 389-410 2-23 (164)
292 1xti_A Probable ATP-dependent 95.6 0.057 2E-06 56.4 11.1 21 388-408 46-66 (391)
293 3rlf_A Maltose/maltodextrin im 95.5 0.02 6.7E-07 60.6 7.3 23 389-411 31-53 (381)
294 3tui_C Methionine import ATP-b 95.5 0.047 1.6E-06 57.3 10.0 24 388-411 55-78 (366)
295 2a9k_A RAS-related protein RAL 95.5 0.037 1.3E-06 51.0 8.3 23 388-410 19-41 (187)
296 1q0u_A Bstdead; DEAD protein, 95.5 0.074 2.5E-06 51.1 10.7 18 388-405 42-59 (219)
297 3q72_A GTP-binding protein RAD 95.5 0.017 5.7E-07 52.4 5.7 21 389-409 4-24 (166)
298 2yhs_A FTSY, cell division pro 95.4 0.039 1.3E-06 60.1 9.4 26 386-411 292-317 (503)
299 3lxx_A GTPase IMAP family memb 95.4 0.022 7.7E-07 55.7 6.9 23 388-410 30-52 (239)
300 2bov_A RAla, RAS-related prote 95.4 0.038 1.3E-06 52.0 8.3 24 387-410 14-37 (206)
301 2v6i_A RNA helicase; membrane, 95.4 0.027 9.4E-07 60.6 8.1 17 388-404 3-19 (431)
302 4b3f_X DNA-binding protein smu 95.4 0.016 5.6E-07 65.7 6.5 40 361-410 189-228 (646)
303 1odf_A YGR205W, hypothetical 3 95.4 0.018 6.1E-07 58.7 6.1 27 386-412 30-56 (290)
304 3ly5_A ATP-dependent RNA helic 95.4 0.031 1.1E-06 55.7 7.8 18 388-405 92-109 (262)
305 4a1f_A DNAB helicase, replicat 95.3 0.02 6.9E-07 59.5 6.5 31 388-418 47-80 (338)
306 2xxa_A Signal recognition part 95.3 0.036 1.2E-06 59.7 8.6 38 385-422 98-139 (433)
307 2atv_A RERG, RAS-like estrogen 95.3 0.05 1.7E-06 51.1 8.7 23 388-410 29-51 (196)
308 1x6v_B Bifunctional 3'-phospho 95.3 0.013 4.5E-07 65.8 5.3 35 386-420 51-88 (630)
309 3p32_A Probable GTPase RV1496/ 95.3 0.078 2.7E-06 55.4 11.0 25 387-411 79-103 (355)
310 1zd9_A ADP-ribosylation factor 95.3 0.033 1.1E-06 52.0 7.3 22 389-410 24-45 (188)
311 2qmh_A HPR kinase/phosphorylas 95.2 0.0091 3.1E-07 57.2 3.1 25 388-412 35-59 (205)
312 3eiq_A Eukaryotic initiation f 95.2 0.12 4.1E-06 54.4 12.3 19 388-406 78-96 (414)
313 1h65_A Chloroplast outer envel 95.2 0.069 2.4E-06 53.4 9.9 44 364-410 19-62 (270)
314 2nzj_A GTP-binding protein REM 95.2 0.04 1.4E-06 50.2 7.5 22 389-410 6-27 (175)
315 3bgw_A DNAB-like replicative h 95.2 0.038 1.3E-06 59.8 8.4 32 388-419 198-232 (444)
316 1bif_A 6-phosphofructo-2-kinas 95.2 0.036 1.2E-06 60.4 8.2 26 388-413 40-65 (469)
317 1hv8_A Putative ATP-dependent 95.2 0.045 1.5E-06 56.4 8.6 23 388-410 45-67 (367)
318 3con_A GTPase NRAS; structural 95.2 0.056 1.9E-06 50.3 8.5 22 389-410 23-44 (190)
319 3q85_A GTP-binding protein REM 95.2 0.043 1.5E-06 49.8 7.5 21 389-409 4-24 (169)
320 3gmt_A Adenylate kinase; ssgci 95.1 0.013 4.3E-07 57.6 4.0 30 389-418 10-39 (230)
321 1j8m_F SRP54, signal recogniti 95.1 0.035 1.2E-06 56.7 7.4 34 387-420 98-134 (297)
322 3iby_A Ferrous iron transport 95.1 0.08 2.7E-06 52.7 10.0 23 388-410 2-24 (256)
323 2xau_A PRE-mRNA-splicing facto 95.1 0.077 2.6E-06 61.5 11.1 55 353-410 70-132 (773)
324 4aby_A DNA repair protein RECN 95.1 0.061 2.1E-06 57.2 9.7 24 389-412 62-85 (415)
325 1wb9_A DNA mismatch repair pro 95.1 0.06 2E-06 62.5 10.2 24 387-410 607-630 (800)
326 2oap_1 GSPE-2, type II secreti 95.1 0.01 3.4E-07 65.5 3.5 67 389-456 262-343 (511)
327 3k53_A Ferrous iron transport 95.1 0.074 2.5E-06 53.2 9.6 23 388-410 4-26 (271)
328 1z6g_A Guanylate kinase; struc 95.0 0.013 4.4E-07 56.9 3.7 24 388-411 24-47 (218)
329 1wrb_A DJVLGB; RNA helicase, D 95.0 0.03 1E-06 55.3 6.4 18 388-405 61-78 (253)
330 3fmp_B ATP-dependent RNA helic 95.0 0.077 2.6E-06 57.5 10.3 50 354-404 91-148 (479)
331 2db3_A ATP-dependent RNA helic 95.0 0.1 3.4E-06 56.0 11.0 49 352-403 53-109 (434)
332 4dsu_A GTPase KRAS, isoform 2B 95.0 0.056 1.9E-06 49.9 7.9 23 389-411 6-28 (189)
333 1c9k_A COBU, adenosylcobinamid 95.0 0.02 6.9E-07 54.0 4.7 31 390-421 2-32 (180)
334 3dz8_A RAS-related protein RAB 94.9 0.12 4E-06 48.2 10.0 23 389-411 25-47 (191)
335 2zj8_A DNA helicase, putative 94.9 0.046 1.6E-06 62.8 8.5 18 388-405 40-57 (720)
336 1znw_A Guanylate kinase, GMP k 94.9 0.015 5.3E-07 55.7 3.8 25 388-412 21-45 (207)
337 1gtv_A TMK, thymidylate kinase 94.9 0.0061 2.1E-07 58.4 0.9 24 389-412 2-25 (214)
338 1q57_A DNA primase/helicase; d 94.9 0.044 1.5E-06 60.2 8.0 32 388-419 243-278 (503)
339 3pqc_A Probable GTP-binding pr 94.9 0.082 2.8E-06 49.0 8.8 23 388-410 24-46 (195)
340 2z0m_A 337AA long hypothetical 94.9 0.05 1.7E-06 55.4 7.9 27 388-414 32-58 (337)
341 1htw_A HI0065; nucleotide-bind 94.9 0.016 5.6E-07 53.4 3.7 24 388-411 34-57 (158)
342 2orv_A Thymidine kinase; TP4A 94.9 0.071 2.4E-06 52.2 8.4 22 389-410 21-42 (234)
343 3szr_A Interferon-induced GTP- 94.8 0.1 3.6E-06 58.7 11.0 24 388-411 46-69 (608)
344 4eaq_A DTMP kinase, thymidylat 94.8 0.017 5.7E-07 56.7 4.0 25 388-412 27-51 (229)
345 1s96_A Guanylate kinase, GMP k 94.8 0.017 5.7E-07 56.4 3.8 27 386-412 15-41 (219)
346 2va8_A SSO2462, SKI2-type heli 94.8 0.051 1.7E-06 62.3 8.5 19 388-406 47-65 (715)
347 3aez_A Pantothenate kinase; tr 94.8 0.03 1E-06 57.6 6.0 27 386-412 89-115 (312)
348 2jeo_A Uridine-cytidine kinase 94.8 0.016 5.5E-07 57.2 3.7 27 388-414 26-52 (245)
349 3b9q_A Chloroplast SRP recepto 94.8 0.038 1.3E-06 56.6 6.5 26 386-411 99-124 (302)
350 3e70_C DPA, signal recognition 94.8 0.037 1.3E-06 57.4 6.5 27 385-411 127-153 (328)
351 3hdt_A Putative kinase; struct 94.7 0.016 5.5E-07 56.7 3.5 29 389-417 16-44 (223)
352 1svi_A GTP-binding protein YSX 94.7 0.19 6.6E-06 46.6 11.0 24 387-410 23-46 (195)
353 1fzq_A ADP-ribosylation factor 94.7 0.033 1.1E-06 51.8 5.6 23 388-410 17-39 (181)
354 1m2o_B GTP-binding protein SAR 94.7 0.024 8.1E-07 53.3 4.6 22 389-410 25-46 (190)
355 1ewq_A DNA mismatch repair pro 94.7 0.076 2.6E-06 61.2 9.6 23 388-410 577-599 (765)
356 1sky_E F1-ATPase, F1-ATP synth 94.7 0.036 1.2E-06 60.0 6.4 23 389-411 153-175 (473)
357 3dkp_A Probable ATP-dependent 94.7 0.077 2.6E-06 51.9 8.5 17 388-404 67-83 (245)
358 1rj9_A FTSY, signal recognitio 94.7 0.02 6.8E-07 58.7 4.2 26 386-411 101-126 (304)
359 3oiy_A Reverse gyrase helicase 94.6 0.062 2.1E-06 57.0 8.1 19 389-407 38-56 (414)
360 1tf7_A KAIC; homohexamer, hexa 94.6 0.056 1.9E-06 59.7 7.9 24 388-411 282-305 (525)
361 1f6b_A SAR1; gtpases, N-termin 94.6 0.016 5.4E-07 55.0 3.0 22 388-409 26-47 (198)
362 3tqc_A Pantothenate kinase; bi 94.6 0.045 1.5E-06 56.5 6.6 26 387-412 92-117 (321)
363 2p6r_A Afuhel308 helicase; pro 94.6 0.025 8.4E-07 64.9 5.1 18 388-405 41-58 (702)
364 2gza_A Type IV secretion syste 94.6 0.027 9.2E-07 59.2 4.9 24 389-412 177-200 (361)
365 2og2_A Putative signal recogni 94.6 0.045 1.5E-06 57.4 6.6 26 386-411 156-181 (359)
366 2ce2_X GTPase HRAS; signaling 94.6 0.076 2.6E-06 47.5 7.4 23 389-411 5-27 (166)
367 1a7j_A Phosphoribulokinase; tr 94.6 0.011 3.9E-07 60.1 1.9 35 389-423 7-44 (290)
368 3ice_A Transcription terminati 94.5 0.071 2.4E-06 56.2 8.0 24 388-411 175-198 (422)
369 1xjc_A MOBB protein homolog; s 94.5 0.034 1.2E-06 51.9 4.8 32 388-419 5-39 (169)
370 3l9o_A ATP-dependent RNA helic 94.5 0.069 2.4E-06 64.3 8.7 21 388-408 200-220 (1108)
371 2v9p_A Replication protein E1; 94.5 0.022 7.6E-07 58.4 3.9 27 385-411 124-150 (305)
372 1z06_A RAS-related protein RAB 94.5 0.17 5.7E-06 47.0 9.8 23 388-410 21-43 (189)
373 3lnc_A Guanylate kinase, GMP k 94.4 0.014 4.9E-07 56.9 2.3 24 388-411 28-52 (231)
374 2xtp_A GTPase IMAP family memb 94.4 0.083 2.9E-06 52.2 8.0 24 387-410 22-45 (260)
375 3t1o_A Gliding protein MGLA; G 94.3 0.063 2.1E-06 49.9 6.5 23 389-411 16-38 (198)
376 1z0f_A RAB14, member RAS oncog 94.3 0.13 4.5E-06 46.8 8.5 24 388-411 16-39 (179)
377 2ffh_A Protein (FFH); SRP54, s 94.2 0.087 3E-06 56.5 7.9 26 386-411 97-122 (425)
378 3kkq_A RAS-related protein M-R 94.2 0.076 2.6E-06 48.9 6.7 23 388-410 19-41 (183)
379 2o8b_B DNA mismatch repair pro 94.2 0.15 5.3E-06 60.6 10.8 21 388-408 790-810 (1022)
380 3fht_A ATP-dependent RNA helic 94.1 0.17 5.8E-06 53.1 10.1 17 388-404 65-81 (412)
381 2i4i_A ATP-dependent RNA helic 94.1 0.19 6.4E-06 53.0 10.5 17 388-404 53-69 (417)
382 1sq5_A Pantothenate kinase; P- 94.1 0.028 9.6E-07 57.6 3.8 25 388-412 81-105 (308)
383 1zj6_A ADP-ribosylation factor 94.1 0.05 1.7E-06 50.6 5.1 22 388-409 17-38 (187)
384 3i8s_A Ferrous iron transport 94.1 0.12 4.3E-06 51.8 8.5 22 389-410 5-26 (274)
385 3t34_A Dynamin-related protein 94.0 0.13 4.4E-06 53.7 8.8 21 389-409 36-56 (360)
386 3v9p_A DTMP kinase, thymidylat 94.0 0.05 1.7E-06 53.3 5.2 23 389-411 27-49 (227)
387 1fuu_A Yeast initiation factor 94.0 0.089 3.1E-06 54.9 7.5 18 388-405 59-76 (394)
388 4edh_A DTMP kinase, thymidylat 94.0 0.057 1.9E-06 52.3 5.5 24 389-412 8-31 (213)
389 1m8p_A Sulfate adenylyltransfe 93.9 0.028 9.7E-07 62.8 3.6 34 387-420 396-433 (573)
390 1np6_A Molybdopterin-guanine d 93.9 0.038 1.3E-06 51.8 3.9 24 388-411 7-30 (174)
391 3o8b_A HCV NS3 protease/helica 93.8 0.32 1.1E-05 55.0 12.0 45 446-499 318-362 (666)
392 2www_A Methylmalonic aciduria 93.8 0.15 5E-06 53.3 8.7 25 387-411 74-98 (349)
393 3kta_A Chromosome segregation 93.8 0.038 1.3E-06 51.4 3.8 25 389-413 28-52 (182)
394 2j0s_A ATP-dependent RNA helic 93.8 0.28 9.5E-06 51.6 11.1 20 388-407 75-94 (410)
395 2h57_A ADP-ribosylation factor 93.8 0.16 5.4E-06 47.3 8.2 24 388-411 22-45 (190)
396 3iev_A GTP-binding protein ERA 93.7 0.17 5.9E-06 51.7 8.9 26 385-410 8-33 (308)
397 3tqf_A HPR(Ser) kinase; transf 93.7 0.032 1.1E-06 52.2 2.9 23 388-410 17-39 (181)
398 2fh5_B SR-beta, signal recogni 93.7 0.15 5E-06 48.5 7.9 24 388-411 8-31 (214)
399 2e87_A Hypothetical protein PH 93.7 0.28 9.6E-06 51.1 10.7 24 387-410 167-190 (357)
400 4a82_A Cystic fibrosis transme 93.7 0.15 5.1E-06 57.0 9.1 26 386-411 366-391 (578)
401 2qtf_A Protein HFLX, GTP-bindi 93.7 0.4 1.4E-05 50.2 11.8 24 387-410 179-202 (364)
402 3qf4_A ABC transporter, ATP-bi 93.7 0.25 8.6E-06 55.2 10.9 26 386-411 368-393 (587)
403 1p5z_B DCK, deoxycytidine kina 93.7 0.016 5.6E-07 57.7 1.0 26 387-412 24-49 (263)
404 2f7s_A C25KG, RAS-related prot 93.6 0.21 7.1E-06 47.5 8.8 22 389-410 27-48 (217)
405 2p5s_A RAS and EF-hand domain 93.6 0.14 4.8E-06 48.1 7.4 23 388-410 29-51 (199)
406 2ocp_A DGK, deoxyguanosine kin 93.6 0.036 1.2E-06 54.4 3.3 25 388-412 3-27 (241)
407 2b6h_A ADP-ribosylation factor 93.6 0.053 1.8E-06 50.9 4.4 22 388-409 30-51 (192)
408 3ozx_A RNAse L inhibitor; ATP 93.5 0.13 4.5E-06 56.9 8.0 24 388-411 295-318 (538)
409 2h17_A ADP-ribosylation factor 93.5 0.036 1.2E-06 51.3 3.0 23 388-410 22-44 (181)
410 3b85_A Phosphate starvation-in 93.5 0.033 1.1E-06 53.7 2.8 22 389-410 24-45 (208)
411 2qm8_A GTPase/ATPase; G protei 93.5 0.11 3.6E-06 54.1 6.8 24 388-411 56-79 (337)
412 1g8f_A Sulfate adenylyltransfe 93.4 0.049 1.7E-06 59.8 4.4 26 388-413 396-421 (511)
413 3tmk_A Thymidylate kinase; pho 93.4 0.08 2.7E-06 51.4 5.4 27 389-415 7-33 (216)
414 4dhe_A Probable GTP-binding pr 93.4 0.16 5.4E-06 48.5 7.5 24 387-410 29-52 (223)
415 3tif_A Uncharacterized ABC tra 93.4 0.038 1.3E-06 54.3 3.1 24 388-411 32-55 (235)
416 4dcu_A GTP-binding protein ENG 93.4 0.14 4.8E-06 55.4 7.8 22 388-409 24-45 (456)
417 3fho_A ATP-dependent RNA helic 93.3 0.16 5.6E-06 55.6 8.5 18 388-405 159-176 (508)
418 2fwr_A DNA repair protein RAD2 93.3 0.09 3.1E-06 56.8 6.3 48 360-418 92-139 (472)
419 3sop_A Neuronal-specific septi 93.3 0.04 1.4E-06 55.4 3.2 23 389-411 4-26 (270)
420 2onk_A Molybdate/tungstate ABC 93.3 0.046 1.6E-06 54.0 3.5 24 388-411 25-48 (240)
421 2jlq_A Serine protease subunit 93.3 0.14 4.9E-06 55.3 7.7 14 389-402 21-34 (451)
422 3llu_A RAS-related GTP-binding 93.2 0.13 4.6E-06 48.2 6.6 23 388-410 21-43 (196)
423 1yks_A Genome polyprotein [con 93.2 0.083 2.8E-06 57.0 5.7 17 388-404 9-25 (440)
424 2f1r_A Molybdopterin-guanine d 93.1 0.027 9.3E-07 52.6 1.5 24 389-412 4-27 (171)
425 2gk6_A Regulator of nonsense t 93.1 0.045 1.5E-06 61.9 3.6 39 362-411 181-219 (624)
426 2f9l_A RAB11B, member RAS onco 93.1 0.049 1.7E-06 51.4 3.3 22 389-410 7-28 (199)
427 2pcj_A ABC transporter, lipopr 93.1 0.04 1.4E-06 53.8 2.8 23 389-411 32-54 (224)
428 2cbz_A Multidrug resistance-as 93.1 0.044 1.5E-06 54.0 3.1 24 388-411 32-55 (237)
429 2z83_A Helicase/nucleoside tri 93.1 0.11 3.8E-06 56.2 6.6 16 388-403 22-37 (459)
430 2il1_A RAB12; G-protein, GDP, 93.0 0.097 3.3E-06 49.0 5.3 21 389-409 28-48 (192)
431 2xgj_A ATP-dependent RNA helic 93.0 0.2 6.7E-06 59.8 9.0 34 362-406 87-120 (1010)
432 3a1s_A Iron(II) transport prot 93.0 0.28 9.6E-06 48.7 8.9 21 389-409 7-27 (258)
433 2hup_A RAS-related protein RAB 93.0 0.13 4.3E-06 48.7 6.0 22 389-410 31-52 (201)
434 4a4z_A Antiviral helicase SKI2 92.9 0.085 2.9E-06 62.8 5.8 20 388-407 55-74 (997)
435 1oix_A RAS-related protein RAB 92.9 0.049 1.7E-06 51.2 3.0 23 389-411 31-53 (191)
436 3fvq_A Fe(3+) IONS import ATP- 92.9 0.043 1.5E-06 57.6 2.8 23 389-411 32-54 (359)
437 1b0u_A Histidine permease; ABC 92.8 0.052 1.8E-06 54.4 3.2 24 388-411 33-56 (262)
438 1sgw_A Putative ABC transporte 92.8 0.044 1.5E-06 53.1 2.5 23 389-411 37-59 (214)
439 4f4c_A Multidrug resistance pr 92.8 0.28 9.6E-06 60.2 10.2 27 385-411 442-468 (1321)
440 2p67_A LAO/AO transport system 92.8 0.18 6.3E-06 52.3 7.4 26 386-411 55-80 (341)
441 1z2a_A RAS-related protein RAB 92.8 0.061 2.1E-06 48.5 3.3 22 389-410 7-28 (168)
442 3e2i_A Thymidine kinase; Zn-bi 92.7 0.091 3.1E-06 50.9 4.5 30 389-418 30-62 (219)
443 3sqw_A ATP-dependent RNA helic 92.7 0.55 1.9E-05 52.2 11.6 17 388-404 61-77 (579)
444 2aka_B Dynamin-1; fusion prote 92.7 0.42 1.5E-05 47.9 9.8 25 386-410 25-49 (299)
445 1lw7_A Transcriptional regulat 92.6 0.053 1.8E-06 56.9 3.1 27 388-414 171-197 (365)
446 1mv5_A LMRA, multidrug resista 92.6 0.054 1.9E-06 53.5 3.0 24 388-411 29-52 (243)
447 2zu0_C Probable ATP-dependent 92.6 0.067 2.3E-06 53.7 3.7 23 388-410 47-69 (267)
448 3gfo_A Cobalt import ATP-bindi 92.6 0.048 1.6E-06 55.0 2.5 23 389-411 36-58 (275)
449 1z47_A CYSA, putative ABC-tran 92.6 0.054 1.9E-06 56.7 3.0 23 389-411 43-65 (355)
450 3lv8_A DTMP kinase, thymidylat 92.6 0.069 2.4E-06 52.6 3.6 24 388-411 28-51 (236)
451 3cr8_A Sulfate adenylyltranfer 92.6 0.045 1.5E-06 60.8 2.4 25 388-412 370-394 (552)
452 2d2e_A SUFC protein; ABC-ATPas 92.5 0.067 2.3E-06 53.1 3.5 23 388-410 30-52 (250)
453 3ux8_A Excinuclease ABC, A sub 92.5 0.7 2.4E-05 52.5 12.4 20 388-407 349-368 (670)
454 3i5x_A ATP-dependent RNA helic 92.5 0.5 1.7E-05 52.1 11.0 17 388-404 112-128 (563)
455 1g6h_A High-affinity branched- 92.5 0.057 2E-06 53.8 3.0 23 389-411 35-57 (257)
456 1ji0_A ABC transporter; ATP bi 92.5 0.05 1.7E-06 53.6 2.5 23 389-411 34-56 (240)
457 2olj_A Amino acid ABC transpor 92.5 0.062 2.1E-06 53.8 3.2 24 388-411 51-74 (263)
458 2ghi_A Transport protein; mult 92.5 0.061 2.1E-06 53.7 3.1 24 388-411 47-70 (260)
459 1ek0_A Protein (GTP-binding pr 92.4 0.071 2.4E-06 48.1 3.3 23 389-411 5-27 (170)
460 1z0j_A RAB-22, RAS-related pro 92.4 0.073 2.5E-06 48.1 3.4 23 389-411 8-30 (170)
461 2it1_A 362AA long hypothetical 92.4 0.072 2.5E-06 55.9 3.7 23 389-411 31-53 (362)
462 3ld9_A DTMP kinase, thymidylat 92.4 0.08 2.7E-06 51.6 3.8 26 388-413 22-47 (223)
463 2zej_A Dardarin, leucine-rich 92.4 0.055 1.9E-06 50.4 2.5 21 389-409 4-24 (184)
464 2pze_A Cystic fibrosis transme 92.4 0.062 2.1E-06 52.6 3.0 24 388-411 35-58 (229)
465 2ff7_A Alpha-hemolysin translo 92.4 0.06 2.1E-06 53.3 3.0 24 388-411 36-59 (247)
466 2ixe_A Antigen peptide transpo 92.4 0.063 2.1E-06 54.0 3.1 24 388-411 46-69 (271)
467 1v43_A Sugar-binding transport 92.4 0.06 2E-06 56.7 3.1 23 389-411 39-61 (372)
468 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.074 2.5E-06 48.6 3.4 23 388-410 8-30 (177)
469 4f4c_A Multidrug resistance pr 92.4 0.23 7.7E-06 61.0 8.5 25 387-411 1105-1129(1321)
470 2yyz_A Sugar ABC transporter, 92.3 0.073 2.5E-06 55.8 3.6 24 388-411 30-53 (359)
471 3b1v_A Ferrous iron uptake tra 92.3 0.43 1.5E-05 47.8 9.2 22 389-410 5-26 (272)
472 1ky3_A GTP-binding protein YPT 92.3 0.076 2.6E-06 48.6 3.4 23 388-410 9-31 (182)
473 1vpl_A ABC transporter, ATP-bi 92.3 0.067 2.3E-06 53.3 3.2 24 388-411 42-65 (256)
474 1yrb_A ATP(GTP)binding protein 92.3 0.12 4E-06 51.0 5.0 34 386-419 13-48 (262)
475 2wji_A Ferrous iron transport 92.3 0.072 2.5E-06 48.6 3.1 21 389-409 5-25 (165)
476 2qi9_C Vitamin B12 import ATP- 92.3 0.065 2.2E-06 53.2 3.0 24 388-411 27-50 (249)
477 1g29_1 MALK, maltose transport 92.3 0.063 2.1E-06 56.6 3.0 23 389-411 31-53 (372)
478 1z08_A RAS-related protein RAB 92.2 0.08 2.7E-06 47.9 3.3 22 389-410 8-29 (170)
479 2eyq_A TRCF, transcription-rep 92.2 0.65 2.2E-05 56.1 12.1 41 363-408 605-645 (1151)
480 2ihy_A ABC transporter, ATP-bi 92.2 0.058 2E-06 54.5 2.5 23 389-411 49-71 (279)
481 4tmk_A Protein (thymidylate ki 92.1 0.073 2.5E-06 51.5 3.1 23 389-411 5-27 (213)
482 1g16_A RAS-related protein SEC 92.1 0.075 2.6E-06 48.0 3.1 22 389-410 5-26 (170)
483 2yz2_A Putative ABC transporte 92.1 0.07 2.4E-06 53.5 3.1 24 388-411 34-57 (266)
484 1wf3_A GTP-binding protein; GT 92.1 0.35 1.2E-05 49.2 8.4 22 389-410 9-30 (301)
485 4a2p_A RIG-I, retinoic acid in 92.1 0.9 3.1E-05 49.6 12.3 22 389-410 24-45 (556)
486 2wsm_A Hydrogenase expression/ 92.0 0.084 2.9E-06 50.6 3.4 25 388-412 31-55 (221)
487 1c1y_A RAS-related protein RAP 92.0 0.086 2.9E-06 47.5 3.3 22 389-410 5-26 (167)
488 2erx_A GTP-binding protein DI- 92.0 0.083 2.8E-06 47.8 3.2 22 389-410 5-26 (172)
489 2wjy_A Regulator of nonsense t 92.0 0.077 2.6E-06 61.6 3.6 39 362-411 357-395 (800)
490 2x2e_A Dynamin-1; nitration, h 92.0 0.41 1.4E-05 49.8 8.9 23 387-409 31-53 (353)
491 1r2q_A RAS-related protein RAB 92.0 0.088 3E-06 47.5 3.3 22 389-410 8-29 (170)
492 2yc2_C IFT27, small RAB-relate 91.9 0.1 3.6E-06 48.9 3.9 22 389-410 22-43 (208)
493 2nq2_C Hypothetical ABC transp 91.9 0.075 2.6E-06 52.9 3.0 23 389-411 33-55 (253)
494 3d31_A Sulfate/molybdate ABC t 91.9 0.065 2.2E-06 56.0 2.5 24 388-411 27-50 (348)
495 1f2t_A RAD50 ABC-ATPase; DNA d 91.9 0.095 3.3E-06 47.6 3.4 23 389-411 25-47 (149)
496 1wp9_A ATP-dependent RNA helic 91.9 0.33 1.1E-05 51.6 8.2 23 389-411 25-47 (494)
497 1tq4_A IIGP1, interferon-induc 91.9 0.14 4.8E-06 54.7 5.2 29 562-591 321-349 (413)
498 2lkc_A Translation initiation 91.9 0.1 3.5E-06 47.6 3.7 24 387-410 8-31 (178)
499 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.11 3.9E-06 56.3 4.5 24 388-411 139-162 (460)
500 3rc3_A ATP-dependent RNA helic 91.8 0.047 1.6E-06 62.1 1.6 18 388-405 156-173 (677)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=349.76 Aligned_cols=239 Identities=24% Similarity=0.381 Sum_probs=203.7
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|...+.. +.++ ..+..|++++|||||||||||++|++||.+++.+|+.++++++..
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46888999999999999999988765 4443 335678899999999999999999999999999999999998865
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..+.... ||||||||+|.++++|...+ .+.....+++.||..++ ....+++||+|||+|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 67788899999999998776 79999999999998875532 23456778889998886 34567999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
|||++++ |||..|+|++|+.++|..||+.++.++.. .++.++..||..|+||
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--------------------------~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--------------------------TGEFDFEAAVKMSDGF 386 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--------------------------CSCCCHHHHHHTCCSC
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHhCCCC
Confidence 9999998 69999999999999999999999987654 2233588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
||+||..+|..+-..+...+...||.+||..+++...+
T Consensus 387 sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 387 NGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 99999999986655555566678999999999987765
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=321.73 Aligned_cols=242 Identities=21% Similarity=0.329 Sum_probs=206.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|.+++.. +.++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 35788999999999999999988765 4443 335678899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..|.... ||||||||+|.+++.|.... .+.....+++.||..++ ....+++||+|||+|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 77889999999999998776 79999999999998875432 23456778899998886 45678999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
|||++++ |||..|+|++|+.++|.+||+.++.+... .++.++..||..|+||
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--------------------------~~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--------------------------TRGINLRKVAEKMNGC 353 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--------------------------CSSCCHHHHHHHCCSC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--------------------------CccCCHHHHHHHCCCC
Confidence 9999998 99999999999999999999999877644 1223588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
||+||..+|+.+-..+...+...||.+||..+++...+...
T Consensus 354 SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 354 SGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccc
Confidence 99999999987666666666778999999999998776443
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=316.71 Aligned_cols=241 Identities=21% Similarity=0.314 Sum_probs=205.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|.+.+.. +.++ ..+..|+++||||||||||||++|++||.+++.+|+.++++++..
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 46788999999999999999998876 4332 345578899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..+.... ||||||||+|.+++.|...+ .+.....+++.||..++ ....+++||+|||+++.
T Consensus 255 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 67888999999999998776 79999999999999885432 23456678888888875 45678999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
||+++++ |||..|+|++|+.++|.+||+.++.++.. -++.++..||..|+||
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--------------------------~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--------------------------SEDVNLETLVTTKDDL 387 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--------------------------CSCCCHHHHHHHCCSC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--------------------------CCcCCHHHHHHhCCCC
Confidence 9999998 99999999999999999999999876543 1223588999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
||+||..+|..+-..+...+...||.+||..+++...+..
T Consensus 388 SGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 388 SGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 9999999998776666666777899999999999877643
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=309.73 Aligned_cols=239 Identities=24% Similarity=0.364 Sum_probs=202.2
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|...+.. +.++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 46788999999999999999887764 3332 345678899999999999999999999999999999999998764
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..+.... ||||||||+|.+++.|... +.+.....+++.||..++ ....+++||+|||+++.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 67788999999999998776 7999999999999887543 223456678888888876 45668999999999999
Q ss_pred CcHHHHc--cccceEecC-CCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 501 LDSAITD--RIDEVIEFP-LPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~-~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
|||++++ |||..|+|| +|+..+|..||+.++.+... .++.++..||..|+|
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--------------------------~~~~dl~~lA~~t~G 377 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--------------------------APEADLDSLIIRNDS 377 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--------------------------CTTCCHHHHHHHTTT
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHHCCC
Confidence 9999998 999999996 89999999999999877543 223358899999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 578 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 578 ~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
|||+||..+|+.+-..+...+...|+.+||..++...+.
T Consensus 378 ~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 378 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 999999999986655566666788999999999977543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=315.77 Aligned_cols=246 Identities=22% Similarity=0.320 Sum_probs=205.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|.+.+.. +.++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 46788999999999999999886554 4332 345578899999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..+.... ||||||||+|.++++|.... .......+++.||..++. ...+++||+|||+|+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred cccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 67788899999999998776 79999999999998886533 234566788899988873 4457899999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
|||++++ |||..|+|++|+.++|.+||+.++.++.. .++.++..||..|+||
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--------------------------~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--------------------------DDDINWQELARSTDEF 386 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--------------------------CSCCCHHHHHHHCSSC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CCcCCHHHHHHhCCCC
Confidence 9999988 99999999999999999999999987654 1222478999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhccc
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 623 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~ 623 (635)
||+||..+|..+-..+...+...||.+||..+++...+...+.+.
T Consensus 387 sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~~i~ 431 (434)
T 4b4t_M 387 NGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVS 431 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCcCcc
Confidence 999999999866555555566789999999999887665444433
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=309.51 Aligned_cols=242 Identities=22% Similarity=0.332 Sum_probs=204.0
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.+++++.|.+.+.. +.++ ..+..|+++||||||||||||++|++||.+++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 36788999999999999999987765 3332 335578999999999999999999999999999999999999865
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..+.... ||||||||+|.++..|...+ .......+++.+|..++ ....+++||+|||+++.
T Consensus 282 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 67788999999999998776 79999999999998876533 23456677888888875 45568999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
||+++++ |||..|+|++|+.++|.+||+.++..+.. -.+..+..||..|+||
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--------------------------~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--------------------------ERGIRWELISRLCPNS 414 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--------------------------CSSCCHHHHHHHCCSC
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--------------------------CCCCCHHHHHHHCCCC
Confidence 9999998 99999999999999999999999876544 1222478899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhh
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
||+||..||+.+-..+...+...||.+||..+++..++...
T Consensus 415 SGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 415 TGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 99999999986655555556678999999999998876443
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=257.75 Aligned_cols=213 Identities=26% Similarity=0.429 Sum_probs=176.5
Q ss_pred cccccCCccccChHHHHHHHHHHHHH-hccc---ccCCCCceEEEecCCCCChHHHHHHHHHHh-CCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~~---~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-~~~~~~l~~~~~~~- 425 (635)
.|...|++|+|.+.+++.|...+... .... ....|++++|||||||||||++|+++|..+ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 45678999999999999998877542 2221 123567899999999999999999999999 88999999988764
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCCCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~---~~~~viiI~ttN~~~~l~ 502 (635)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... ......+++.|+..++. ...+++||+|||.++.++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 45567778889998887654 79999999999988776543 34556677778777653 457899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++++||+..++|++|+.++|..|++.++..... .+++.++..|+..|.||||+|
T Consensus 164 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 164 SAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-------------------------SLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-------------------------CCCHHHHHHHHHTCTTCCHHH
T ss_pred HHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999875433 268889999999999999999
Q ss_pred HHHHHHHHH
Q 006700 583 IAKLMASVQ 591 (635)
Q Consensus 583 I~~L~~~~q 591 (635)
|..||..+.
T Consensus 219 l~~l~~~A~ 227 (322)
T 1xwi_A 219 ISIIVRDAL 227 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997544
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.1e-28 Score=259.62 Aligned_cols=241 Identities=24% Similarity=0.368 Sum_probs=189.6
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhc-c---cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN-T---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~-~---~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..|...|++|+|++.+++.|...+..... . .....|++++|||||||||||++|+++|..++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 45677899999999999999987754322 1 223456789999999999999999999999999999999988643
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCCCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~---~~~~~viiI~ttN~~~~l~ 502 (635)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... ......+.+.++..++ ....+++||+|||.++.++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 56677788899999887665 79999999999987664321 1222344555555543 4567899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++++||+..++|++|+.++|..||+.++..... .+++..+..|+..|+||||+|
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-------------------------VLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-------------------------CCCHHHHHHHHHTTTTCCHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876543 268889999999999999999
Q ss_pred HHHHHHHHHHHHHcC-------------------------------------------CCCccCHHHHHHHHHHHHhhh
Q 006700 583 IAKLMASVQAAVYAR-------------------------------------------PDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 583 I~~L~~~~q~aa~~s-------------------------------------------~~~~lt~~~i~~~l~~~~~~~ 618 (635)
|..||..+...++.. ....||.+||..++....|..
T Consensus 224 i~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 224 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 999996543332210 013599999999999887743
No 9
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=2.3e-28 Score=260.42 Aligned_cols=242 Identities=23% Similarity=0.346 Sum_probs=184.9
Q ss_pred ccccccCCccccChHHHHHHHHHHHHH-hcc---cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~---~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..+...|++|+|++.+++.|...+... ... .....+++++|||||||||||++|++||..++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 346678999999999999998876543 222 223456789999999999999999999999999999999887643
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCCCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~---~~~~~viiI~ttN~~~~l~ 502 (635)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... ......+++.|+..++ ....+++||+|||.++.++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp C---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 45566777888898886554 79999999999987665432 2344555666665554 4467899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++++||+..++|++|+.++|..||+.++..... .+++.++..|+..|+||+|+|
T Consensus 202 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~~~~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 202 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-------------------------VLTKEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CCCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999876432 267889999999999999999
Q ss_pred HHHHHHHHHHHHHcC-------------------------------------------CCCccCHHHHHHHHHHHHhhhh
Q 006700 583 IAKLMASVQAAVYAR-------------------------------------------PDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 583 I~~L~~~~q~aa~~s-------------------------------------------~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
|..||..+...++.. ....||.+||..++....|.-.
T Consensus 257 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 257 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 999997655544431 0135899999999999887543
No 10
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=247.00 Aligned_cols=244 Identities=22% Similarity=0.331 Sum_probs=181.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccc----cCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chh
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGA 428 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~ 428 (635)
...|++++|.+.+++.|..++........ +..+++++||+||||||||++|+++|..++.+++.++++++.. +.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 45789999999999999998877655432 2356678999999999999999999999999999999988764 556
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc---CcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCcH
Q 006700 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH---MSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 429 ~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~---~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l~~ 503 (635)
.....+..+|..+.... ++||||||+|.+...+.... .+......++.++..++. ...+++||+|||.++.+++
T Consensus 82 ~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 82 LGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred hhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 66777888898887654 79999999999977654321 123345567777776653 3468999999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH-HHHHHHHHHcCCCCH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD-NVIQEAARKTEGFSG 580 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~G~sg 580 (635)
++++ ||+..++|++|+.++|..|++.++..... ..+. ..+..++..+.||+|
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-------------------------TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-------------------------CBTHHHHHHHHHHTCTTCCH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-------------------------CcchhhHHHHHHHHCCCCCH
Confidence 9999 99999999999999999999999987643 1222 346889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhccc
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK 623 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~ 623 (635)
++|..+++.+...+...+...|+.++|..++....+...++.+
T Consensus 216 ~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~ 258 (262)
T 2qz4_A 216 ADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSK 258 (262)
T ss_dssp HHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhhH
Confidence 9999999877666666666789999999999998876655543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=2.1e-30 Score=298.62 Aligned_cols=240 Identities=27% Similarity=0.435 Sum_probs=160.3
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHh-cc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|+++.|.+++++.|..++.... +. ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 4567789999999999999988766432 21 234567889999999999999999999999999999999988754
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+++...++.+|..|+... ||||||||||.+++.|+.. +.+.....+++.||..++ ....+++||+|||+|+.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 67788899999999998766 7999999999999988642 223455678999998886 34567999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
||+++++ |||..|+|++|+.++|..||+.++.+... ..+.++..||..|+||
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~--------------------------~~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGF 682 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----------------------------CCC-------------
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC--------------------------CCCCCHHHHHHhCCCC
Confidence 9999999 99999999999999999999988765433 2344688999999999
Q ss_pred CHHHHHHHHHHHHHHHHcC-------------------------CCCccCHHHHHHHHHHHHhh
Q 006700 579 SGREIAKLMASVQAAVYAR-------------------------PDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s-------------------------~~~~lt~~~i~~~l~~~~~~ 617 (635)
||+||..+|..+...+... ....|+.+||..++....|+
T Consensus 683 SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 683 SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 9999999997554333210 01258888998888888774
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.8e-27 Score=245.12 Aligned_cols=244 Identities=27% Similarity=0.420 Sum_probs=198.2
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHh-cc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|++++|.+.+++.|...+.... .. ..+..+++++||+||||||||++|++++..++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 3456789999999999999988775432 21 112356678999999999999999999999999999999888754
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+.....+..+|..+.... ++||||||+|.+.+++.+.. .....+..+..++..++ ....+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 55667778888888887655 68999999999987665421 23455677777877764 34568999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++++++ ||+.++.|++|+.++|..|++.++..... ..+..+..|+..+.||
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL--------------------------AEDVNLEEIAKMTEGC 222 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHHCTTC
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC--------------------------CCcCCHHHHHHHcCCC
Confidence 9999999 99999999999999999999998766543 1223478899999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhc
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 621 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~ 621 (635)
++++|..+|+.+...+.......||.++|..++..........
T Consensus 223 ~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 223 VGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhccccc
Confidence 9999999999888888887788999999999999988754443
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=2.5e-29 Score=289.72 Aligned_cols=244 Identities=25% Similarity=0.412 Sum_probs=198.3
Q ss_pred ccccccCCccccChHHHHHHHHHHHH-Hhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|..+|++|.|.++.++.|++++.. +.++ ..+..|+++||||||||||||++|+++|.++|.+|+.++|+++..
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34677899999999999999988765 4443 234468899999999999999999999999999999999988754
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCc
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~ 502 (635)
+.+++...++.+|..|.... |+||||||+|.+++++++.. +.....+++.|+..++ ....+++||+|||.++.+|
T Consensus 277 k~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 67888999999999998765 79999999999998887543 3344667777776664 2446799999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++ |||..|+|++|+..+|..||+.++..... .++.++..||..|+||+|
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--------------------------~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVG 408 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--------------------------CTTCCHHHHHHHCCSCCH
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--------------------------CcccCHHHHHHhcCCCCH
Confidence 99999 99999999999999999999988765543 233458899999999999
Q ss_pred HHHHHHHHHHHHHHHcC-----------------CCCccCHHHHHHHHHHHHhhhhhcc
Q 006700 581 REIAKLMASVQAAVYAR-----------------PDCVLDSQLFREVVEYKVEEHHQRI 622 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s-----------------~~~~lt~~~i~~~l~~~~~~~~~~~ 622 (635)
+||..||+.+...+... ....++.+||..++....|...+..
T Consensus 409 aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~ 467 (806)
T 3cf2_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET 467 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccc
Confidence 99999997544333211 1135788899999988887666543
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.3e-27 Score=240.95 Aligned_cols=238 Identities=24% Similarity=0.367 Sum_probs=189.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|++++|.+.+++.+..++..+.... .+..+++++||+||||||||++|++++..++.+++.+++.++.. +
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 456789999999999999999887765532 22345678999999999999999999999999999999988764 3
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~~~~l~ 502 (635)
.+.....+..+|..+.... +++|||||+|.+...+... +........++.++..++. ...+++||+|||.++.++
T Consensus 86 ~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 3455667788888876544 7899999999998765432 1122334567777777652 456799999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++ ||+..+.|++|+.++|..|++.++..... .++..+..++..|.|||+
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l--------------------------~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--------------------------APDIDAAIIARGTPGFSG 218 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------CccccHHHHHHHcCCCCH
Confidence 99998 99999999999999999999998865432 122346778999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+||..+|..+...+...+...||.++|..+++....
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 999999988777777767788999999999988653
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.7e-27 Score=261.28 Aligned_cols=239 Identities=23% Similarity=0.346 Sum_probs=190.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|++|+|.+++++.+..++..+.+.. .+..+++++||+||||||||++|+++|..++.+|+.++|+++.. +
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 455689999999999999999988766532 23456678999999999999999999999999999999988765 4
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~ 502 (635)
.+.....+..+|..+.... |+||||||+|.+.+++... +........++.|+..++ ....+++||+|||.++.++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 4556677888999887655 7999999999998766531 222334567788887765 2346799999999999999
Q ss_pred HHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+++++ |||..|.|++|+.++|..|++.++..... .++..+..|+..|.||+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--------------------------~~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--------------------------AEDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--------------------------cchhhHHHHHHhcCCCcH
Confidence 99987 99999999999999999999988865432 122236779999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhh
Q 006700 581 REIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 581 rdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~ 617 (635)
+||.++|+.+...+...+...|+.++|..+++..++.
T Consensus 223 adL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 9999999877666665566789999999999987653
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=3.2e-27 Score=258.96 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=169.8
Q ss_pred cccccCCccccChHHHHHHHHHHHHH-hccc---ccCCCCceEEEecCCCCChHHHHHHHHHHh-CCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~~---~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-~~~~~~l~~~~~~~- 425 (635)
.|...|++|+|++.+++.|...+... .... ....|++++|||||||||||++|++||..+ +.+|+.++++++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 46678999999999999998876432 2211 123567899999999999999999999999 88999999988754
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCCCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~---~~~~viiI~ttN~~~~l~ 502 (635)
+.+.....+..+|..+.... ++||||||||.+++.+.... ......+++.|+..++. ...+++||+|||.++.++
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ----CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 44555667888888887654 79999999999987765432 34456677888887764 457899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++++||+..++|++|+.++|..||+.++..... .+++.++..|+..|+||||+|
T Consensus 286 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------------------------~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-------------------------SLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-------------------------ECCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999865432 268889999999999999999
Q ss_pred HHHHHHHHH
Q 006700 583 IAKLMASVQ 591 (635)
Q Consensus 583 I~~L~~~~q 591 (635)
|..||..+.
T Consensus 341 l~~l~~~a~ 349 (444)
T 2zan_A 341 ISIIVRDAL 349 (444)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999996544
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=244.57 Aligned_cols=240 Identities=23% Similarity=0.352 Sum_probs=188.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHH-hccc---ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~~---~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|++++|++.+++.|...+... .... ....+++++||+||||||||++|+++|..++.+|+.++++++.. +
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 35678999999999999998877642 2211 12356679999999999999999999999999999999988764 4
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCCCCCc
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~~~~~viiI~ttN~~~~l~ 502 (635)
.+.....+..+|..+.... ++||||||+|.+.+.+.... .......++.++..++ ....+++||+|||.++.++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 5566677888888876554 79999999999987654322 2334556666666654 2356899999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++++||+..++|++|+.++|..|+..++..... .++++.+..|+..+.||+|+|
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-------------------------CLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-------------------------CCCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-------------------------CccHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999998876433 278899999999999999999
Q ss_pred HHHHHHHHHHHHHc------------CCCCccCHHHHHHHHHHHHhhh
Q 006700 583 IAKLMASVQAAVYA------------RPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 583 I~~L~~~~q~aa~~------------s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
|..||..+...++. .....|+.++|..++....|..
T Consensus 291 l~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 99999754433332 2345799999999999988744
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=248.87 Aligned_cols=239 Identities=27% Similarity=0.433 Sum_probs=180.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHHH-hcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..|...|++|+|.+.+++.|..++... ... ..+..+++++|||||||||||++|++||..++.+|+.++|+++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 346678999999999999999887653 111 123356778999999999999999999999999999999887643
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+.....+..+|..+.... |+||||||+|.+...+.... .......+++.++..++ ....+++||+|||.++.
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 34455567788898887655 79999999999987764321 01111234455555553 23467999999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++++++ ||+..++|++|+.++|..|++.++..... ..+..+..++..++||
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--------------------------~~~~~~~~la~~~~g~ 220 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGF 220 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CSSCCHHHHHHTCSSC
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--------------------------CccchHHHHHHHcCCC
Confidence 9999998 99999999999999999999999876533 1122366788899999
Q ss_pred CHHHHHHHHHHHHHHHHcC-------------------------CCCccCHHHHHHHHHHHHh
Q 006700 579 SGREIAKLMASVQAAVYAR-------------------------PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s-------------------------~~~~lt~~~i~~~l~~~~~ 616 (635)
||+||..+|..+...++.. ....|+.+||..++....+
T Consensus 221 sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 221 SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 9999999997554443321 0135889999999887655
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=4e-26 Score=252.18 Aligned_cols=242 Identities=25% Similarity=0.417 Sum_probs=194.1
Q ss_pred ccccCCccccChHHHHHHHHHHHHHh-cc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
+...|++++|.+..++.|..++.... .. ..+..+++++|||||||||||++|++|+..++.+|+.++|+.+.. +
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 34578999999999999988776532 11 122456778999999999999999999999999999999988754 5
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcHH
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 504 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~~ 504 (635)
.+.....+..+|..+.... ++||||||||.+.+++.... ......+++.|+..++ ....+++||+|||.++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 6777888999999987665 68999999999988765432 3444556666666554 345689999999999999999
Q ss_pred HHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 505 ITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 505 l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+++ ||+..++|++|+.++|..||+.++..... ..+..+..++..+.||+++|
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--------------------------~~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--------------------------CTTCCHHHHHHTCTTCCHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--------------------------cchhhHHHHHHHccCCcHHH
Confidence 998 99999999999999999999998766543 22335788999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-----------------CccCHHHHHHHHHHHHhhhhhcc
Q 006700 583 IAKLMASVQAAVYARPD-----------------CVLDSQLFREVVEYKVEEHHQRI 622 (635)
Q Consensus 583 I~~L~~~~q~aa~~s~~-----------------~~lt~~~i~~~l~~~~~~~~~~~ 622 (635)
|..||..+...+..... ..||.++|..++....|+..+.+
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~ 467 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET 467 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcc
Confidence 99999866555544321 14899999999999999887664
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=241.49 Aligned_cols=237 Identities=25% Similarity=0.388 Sum_probs=176.4
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-ch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~ 427 (635)
+...|++++|++.+++.|..++...... .....+.+++|||||||||||++|++||..++.+|+.++|+.+.. +.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 4457899999999999998877543321 112245679999999999999999999999999999999988764 44
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCCCCCcH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----~~~~~viiI~ttN~~~~l~~ 503 (635)
+.....+..+|..+.... ++||||||||.++..+.... .......++.|+..++ ....+++||+|||.++.+++
T Consensus 190 g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp --CHHHHHHHHHHHHHSS-SEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred chHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCcc-chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 556677888898887665 68999999999977654322 1122333444443332 34567999999999999999
Q ss_pred HHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHH
Q 006700 504 AITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 583 (635)
Q Consensus 504 ~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI 583 (635)
++++||+.+++|++|+.++|..||..++..... .++++.+..|+..+.||++++|
T Consensus 268 ~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~l~~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 268 AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-------------------------PLTQKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-------------------------CSCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 999999989999999999999999998876433 2788899999999999999999
Q ss_pred HHHHHHHHHHHHcC------------CCCccCHHHHHHHHHHHHh
Q 006700 584 AKLMASVQAAVYAR------------PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 584 ~~L~~~~q~aa~~s------------~~~~lt~~~i~~~l~~~~~ 616 (635)
..|+..+...+... ....|+.++|..++....+
T Consensus 323 ~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 323 TALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 99997554443332 3457999999999887554
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=2.2e-25 Score=231.03 Aligned_cols=238 Identities=25% Similarity=0.386 Sum_probs=180.0
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhc-cc---ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATAN-TK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~-~~---~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|++++|++.+++.|...+..... .. ....+++++||+||||||||++|++++..++.+|+.++|+++.. +
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 4567899999999999999887654321 11 11245679999999999999999999999999999999988754 4
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-----CCCCEEEEEEeCCCCCC
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-----QSRDIVLVLATNRPGDL 501 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-----~~~~viiI~ttN~~~~l 501 (635)
.+.....+..+|..+.... ++||||||+|.+...+.... ........+.++..++. ...+++||++||.++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 4455667778888776554 78999999999987654321 01112333444444331 12569999999999999
Q ss_pred cHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 502 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 502 ~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
++++++||+..+++++|+.++|..|+..++..... .++++.+..|+..+.||+++
T Consensus 173 ~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-------------------------PLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-------------------------CSCHHHHHHHHHHTTTCCHH
T ss_pred CHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999998876532 26888999999999999999
Q ss_pred HHHHHHHHHHHHHHcC------------CCCccCHHHHHHHHHHHHh
Q 006700 582 EIAKLMASVQAAVYAR------------PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s------------~~~~lt~~~i~~~l~~~~~ 616 (635)
+|..||..+...+... ....||.+||..++....+
T Consensus 228 ~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 228 DLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence 9999997544333321 2357999999998877654
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=9.3e-26 Score=248.85 Aligned_cols=239 Identities=23% Similarity=0.339 Sum_probs=189.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-ch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~ 427 (635)
+...|++|+|.++++..+.+++..+.+.. .+...++++||+||||||||+++++||..++.+++.++|.++.. +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 66789999999999999999988776542 22345678999999999999999999999999999999988765 34
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 503 (635)
+.....+..+|..+... .++|+||||+|.+...+... .........++.++..++ .....+++|++||.|+.+|+
T Consensus 106 g~~~~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp THHHHHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhHHHHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 44556677788766533 36899999999997665431 223455678889988876 34557899999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
++++ |||..|.|++|+.++|..||+.++..... .++..+..|+..|.||+|+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l--------------------------~~dv~l~~lA~~t~G~~ga 238 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFVGA 238 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC--------------------------CCSSTTHHHHTTSCSCCHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCC--------------------------ChHHHHHHHHHhcCCCCHH
Confidence 9998 89999999999999999999877543221 1233478899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhh
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEH 618 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~ 618 (635)
||.++|+.+-..+...+...||.++|..+++...+..
T Consensus 239 dL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 239 DLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp HHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccc
Confidence 9999998665555544557899999999999877643
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=3.7e-25 Score=224.28 Aligned_cols=234 Identities=23% Similarity=0.352 Sum_probs=178.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
..|...|++++|.+.++..+..+....... ..+...+++++|+||||||||+++++++..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 456778999999999999999988765442 112244567999999999999999999999999999988876543
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l 501 (635)
..+.....+..+|..+.... ++++||||+|.+...+... .........++.++..++ .....+++++++|.|+.+
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 23344556777887775433 6899999999987655421 123445567777777764 344567888999999999
Q ss_pred cHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
|+++++ ||+..++|++|+.++|..||+.++..... .++..+..|+..|.||+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFV 221 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCC
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC--------------------------CcccCHHHHHHHcCCCC
Confidence 999998 89999999999999999999987654322 12234778999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
|+||..+|+.+...+...+...||.+++.+++
T Consensus 222 ~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 222 GADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 99999999876666666566789999998875
No 24
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=9.9e-26 Score=231.52 Aligned_cols=243 Identities=22% Similarity=0.337 Sum_probs=172.9
Q ss_pred cccccCCccccChHHHHHHHHHH-HHHhcc----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLA-KATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~-~~~~~~----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
.|...|++|.|.+++++.|...+ ....+. ..+-.++++++|+||||||||+++++||..++.+++.+++.++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 45678999999999999998744 333332 223355678999999999999999999999999999999988765
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcH
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 503 (635)
+.+.....+..+|..+.... |+|+|+||+|.+...+.... .......++.++..++ .....++++++||.|+.+|+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 34566677888998875544 79999999999876543221 1122345677777664 44567889999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCC
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFS 579 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~s 579 (635)
++++ |||..|+|++|+.++|..||+.++..... .. ...+..+..|+.. |+|||
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~---------------------~~--~~~~~~~~~la~~~~~~g~s 218 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK---------------------PP--LDADVNLEAIAGDLRCDCYT 218 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT---------------------TB--BCTTCCHHHHHTCSGGGSCC
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC---------------------CC--CccccCHHHHHHhhccCCcC
Confidence 9998 99999999999999999999988754221 00 0123357788876 45999
Q ss_pred HHHHHHHHHHHHHHHHcC-----------CCCccCHHHHHHHHHHHHhhhh
Q 006700 580 GREIAKLMASVQAAVYAR-----------PDCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s-----------~~~~lt~~~i~~~l~~~~~~~~ 619 (635)
|+||..||+.+...+... +...|+.+||..+++...|+..
T Consensus 219 gadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 219 GADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 999999997554443321 2346999999999988776443
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=5.7e-28 Score=246.81 Aligned_cols=243 Identities=23% Similarity=0.358 Sum_probs=180.1
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-c
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~ 426 (635)
.+...|++++|++.+++.+..++..+.... .+..+++++||+||||||||++|++++..++.+++.++++.+.. +
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 456689999999999999999887655432 13345678999999999999999999999999999999887654 2
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccC---cHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCC
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM---SEAQRSALNALLFRTGD---QSRDIVLVLATNRPGD 500 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~---~~~~~~~L~~ll~~~~~---~~~~viiI~ttN~~~~ 500 (635)
.+.....+..+|..+.... ++||||||+|.+...+...+. .......++.++..++. ...+++||+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 3333344556777776554 689999999999765432110 00111234555555542 3346899999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+++++++ ||+..++|++|+.++|..||+.++..... .++..+..|+..+.||
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL--------------------------ANDVNLQEVAKLTAGL 217 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC--------------------------CSSCCTTTTTSSSCSS
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC--------------------------CCccCHHHHHHHcCCC
Confidence 9999998 99999999999999999999988765432 1112345577789999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhc
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQR 621 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~ 621 (635)
+|+||..+++.+...+...+...|+.+++..++....+.+.++
T Consensus 218 ~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 218 AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC--
T ss_pred CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchhh
Confidence 9999999998777766666667899999999988877755444
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=3.1e-24 Score=220.67 Aligned_cols=232 Identities=23% Similarity=0.356 Sum_probs=178.3
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-ch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~ 427 (635)
+...|++++|.++++..+..+........ .+...+++++|+||||||||+++++|+..++.+++.+++.++.. ..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 67789999999999999999887665421 12234567999999999999999999999999999998876543 23
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccc--cCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcH
Q 006700 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~--~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 503 (635)
+.....+..+|..+.... ++++||||+|.+...+... .........++.++..++ .....+++++++|.|+.+|+
T Consensus 115 ~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp THHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 344456777888776443 6899999999987654321 123445667788887775 33456888899999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
++++ ||+..++|++|+.++|..||+.++..... .++..+..++..|.||+|+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--------------------------~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--------------------------AEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB--------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC--------------------------CcccCHHHHHHHcCCCCHH
Confidence 9998 89999999999999999999987754322 1223477899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
||..+|..+...+...+...||.+++.+++
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999866665555555789999998875
No 27
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.92 E-value=8.5e-24 Score=249.67 Aligned_cols=357 Identities=17% Similarity=0.184 Sum_probs=241.2
Q ss_pred HHHHHhHHHHHHHHHHHHhcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006700 154 EDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAK 233 (635)
Q Consensus 154 ~d~l~r~~~q~e~e~~~~~~e~~~~~qee~~~r~e~~r~~~~~el~~l~~~~~~ek~el~~~~~~~k~~~E~~~~~~~~~ 233 (635)
=++++|++.+.+.+...+.++......++.....+++ ..+..++..++.+|+.++..++..+..+..+.+++..+....
T Consensus 403 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (854)
T 1qvr_A 403 IDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEI-AKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAE 481 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3678899999999999998886544444555555555 667788899999999999999999999888888888888887
Q ss_pred hhcchhHHH-HHhhhhhhHHHHHHHHhhhhccccccceeecccccchhheehhhhhhhhhhhhccCccchhhHHHHHHhC
Q 006700 234 LTEDHNRRM-LIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILG 312 (635)
Q Consensus 234 ~~~d~~~~~-l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~i~~~lg 312 (635)
.+.|+.... +++...++.+..+..+... .. ...+.....+++.+..+|..|+++++.... .....+++.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~--------~~~~~~l~~ 551 (854)
T 1qvr_A 482 RQYDLNRAAELRYGELPKLEAEVEALSEK-LR-GARFVRLEVTEEDIAEIVSRWTGIPVSKLL--------EGEREKLLR 551 (854)
T ss_dssp TTTCHHHHHHHHTTHHHHHHHHHHHHHHH-SS-SCSSCCSEECHHHHHHHHHTTSSCHHHHTT--------CCHHHHHHS
T ss_pred hcccHHHHHHHhhhhhHHHHHHHHHHHhh-hc-ccccccCCcCHHHHHHHHHHHhCCChHhhc--------HHHHHHHHH
Confidence 777877665 6655555555556555432 00 111111112445555666666555443311 111111110
Q ss_pred CCCccccccCCCCCCcchhHHHHHHHhhhccCCCCCCcccccccCCccccChHHHHHHHHHHHHHhcc-cccCCCCceEE
Q 006700 313 QPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNML 391 (635)
Q Consensus 313 ~p~l~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~-~~~~~p~~~iL 391 (635)
-....+.+|||++.++..|...+.....+ ..+..|..++|
T Consensus 552 ---------------------------------------l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vL 592 (854)
T 1qvr_A 552 ---------------------------------------LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFL 592 (854)
T ss_dssp ---------------------------------------HHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEE
T ss_pred ---------------------------------------HHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEE
Confidence 00112367999999999998888776654 33345667899
Q ss_pred EecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccc------hhhHH---HHH-HHHHHHHhhcCCcEEEEecCchhh
Q 006700 392 FYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL------GAQAV---TKI-HEIFDWAKKSKKGLLLFIDEADAF 458 (635)
Q Consensus 392 L~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~------~~~~~---~~l-~~~f~~a~~~~~~~vL~iDEid~l 458 (635)
|+||||||||++|++|+..+ +.+|+.++|+.+... .+... +.- .+.|..+....+++||||||++.+
T Consensus 593 l~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l 672 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA 672 (854)
T ss_dssp EBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc
Confidence 99999999999999999998 778999999876541 10000 000 122333334566899999999976
Q ss_pred hhhcccccCcHHHHHHHHHHHHHhCCC-----------CCCEEEEEEeCC--------------------------CCCC
Q 006700 459 LCERNSIHMSEAQRSALNALLFRTGDQ-----------SRDIVLVLATNR--------------------------PGDL 501 (635)
Q Consensus 459 ~~~r~~~~~~~~~~~~L~~ll~~~~~~-----------~~~viiI~ttN~--------------------------~~~l 501 (635)
+. .+++.|++.+++. ..+++||+|||. ...+
T Consensus 673 ---------~~---~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 673 ---------HP---DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp ---------CH---HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred ---------CH---HHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 23 4555666665532 358899999997 2357
Q ss_pred cHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCC
Q 006700 502 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GFS 579 (635)
Q Consensus 502 ~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~s 579 (635)
.|+|++||+.++.|++|+.+++..|+..++..+.. .+... .+.+ .++++++..|+.++. .++
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~-------------~~~~~--~~~~-~~~~~a~~~L~~~~~~~~gn 804 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA-------------RLAEK--RISL-ELTEAAKDFLAERGYDPVFG 804 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH-------------HHHTT--TCEE-EECHHHHHHHHHHHCBTTTB
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH-------------HHHhC--CceE-EECHHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999999999987543 11111 1111 389999999998865 456
Q ss_pred HHHHHHHHH
Q 006700 580 GREIAKLMA 588 (635)
Q Consensus 580 grdI~~L~~ 588 (635)
.|+|..++.
T Consensus 805 ~R~L~~~i~ 813 (854)
T 1qvr_A 805 ARPLRRVIQ 813 (854)
T ss_dssp TSTHHHHHH
T ss_pred hHHHHHHHH
Confidence 677777664
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=5.7e-21 Score=203.66 Aligned_cols=226 Identities=16% Similarity=0.217 Sum_probs=166.9
Q ss_pred cccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCcccch
Q 006700 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLG 427 (635)
Q Consensus 350 ~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~~~~ 427 (635)
...|...|+++||++..+..+..+...+.... .+++++||+||||||||++|+++++.++. +++.++|..+....
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred ccCcCcchhhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34566679999999999999888877766543 33568999999999999999999999975 67666655422110
Q ss_pred --------------------------------------------------hhHHHHHHHHHHHHhh----cC----CcEE
Q 006700 428 --------------------------------------------------AQAVTKIHEIFDWAKK----SK----KGLL 449 (635)
Q Consensus 428 --------------------------------------------------~~~~~~l~~~f~~a~~----~~----~~~v 449 (635)
+.....+...+..+.. .. .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 1112233334433221 11 1469
Q ss_pred EEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe-----------CCCCCCcHHHHccccceEecCCC
Q 006700 450 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT-----------NRPGDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 450 L~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt-----------N~~~~l~~~l~~R~d~~i~~~~p 518 (635)
|||||+|.+. ...++.|+..+++...++++|++. |.+..+++.+++|| ..+.|++|
T Consensus 193 l~IDEi~~l~------------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-~~i~~~~~ 259 (368)
T 3uk6_A 193 LFIDEVHMLD------------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-LIVSTTPY 259 (368)
T ss_dssp EEEESGGGSB------------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTE-EEEEECCC
T ss_pred EEEhhccccC------------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhc-cEEEecCC
Confidence 9999999873 235566666666666666555554 34778999999999 45899999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q 006700 519 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 598 (635)
Q Consensus 519 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~ 598 (635)
+.+++..|+..++..... .++++++..|+..+.|.++|++..++..+...+...+
T Consensus 260 ~~~e~~~il~~~~~~~~~-------------------------~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDV-------------------------EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp CHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999998876432 2789999999999984589999999987776666667
Q ss_pred CCccCHHHHHHHHHHHHh
Q 006700 599 DCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 599 ~~~lt~~~i~~~l~~~~~ 616 (635)
...||.+++..++..++.
T Consensus 315 ~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 315 GTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp CSSBCHHHHHHHHHHSBC
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 789999999999987553
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=8.2e-22 Score=204.30 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=127.4
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-chhhHHHHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHE 436 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~-~~~~~~~~l~~ 436 (635)
++++..+.+...+...+..-.....+..+++++|||||||||||++|++||+.++.+|+.++++.+.. +.+.....+..
T Consensus 7 ~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~ 86 (293)
T 3t15_A 7 DGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 86 (293)
T ss_dssp TTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHH
Confidence 44555555555443222211111223456789999999999999999999999999999999888653 55677788888
Q ss_pred HHHHHh---hcCCcEEEEecCchhhhhhcccccC-cHHHHHHHHHHHHHhC-------------CCCCCEEEEEEeCCCC
Q 006700 437 IFDWAK---KSKKGLLLFIDEADAFLCERNSIHM-SEAQRSALNALLFRTG-------------DQSRDIVLVLATNRPG 499 (635)
Q Consensus 437 ~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~-~~~~~~~L~~ll~~~~-------------~~~~~viiI~ttN~~~ 499 (635)
+|..+. +...++||||||||.+.+.+++... ....+.+.+.|+..++ ....+++||+|||.++
T Consensus 87 ~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 87 RYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp HHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 898873 2345799999999999875443211 1112234444544432 1345799999999999
Q ss_pred CCcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 500 DLDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 500 ~l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
.+++++++ ||+..++ .|+.++|..|++.++.... ++ +..++..+.|
T Consensus 167 ~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~---------------------------~~---~~~l~~~~~~ 214 (293)
T 3t15_A 167 TLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN---------------------------VP---AEDVVKIVDN 214 (293)
T ss_dssp C--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC---------------------------CC---HHHHHHHHHH
T ss_pred cCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC---------------------------CC---HHHHHHHhCC
Confidence 99999996 9988776 4699999999998775322 33 4556666778
Q ss_pred CCHHHHHH
Q 006700 578 FSGREIAK 585 (635)
Q Consensus 578 ~sgrdI~~ 585 (635)
|++.+|..
T Consensus 215 ~~~~~l~~ 222 (293)
T 3t15_A 215 FPGQSIDF 222 (293)
T ss_dssp SCSCCHHH
T ss_pred CCcccHHH
Confidence 88888764
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=1.3e-20 Score=198.73 Aligned_cols=215 Identities=19% Similarity=0.232 Sum_probs=164.7
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
+..|++++|++.+++.+...+..... ...++.++||+||||||||++|+++++.++.+|+.++|..+.. .+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-----~~~ 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK---RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK-----SGD 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH---TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-----HHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh---cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-----hhH
Confidence 34789999999999999887776543 2345567999999999999999999999999999999876542 223
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC---------------CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---------------QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~---------------~~~~viiI~ttN~~ 498 (635)
+...+. ....+++||||||+.+. ...+..|..++..... ...+++||++||..
T Consensus 97 ~~~~~~---~~~~~~vl~lDEi~~l~---------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~ 164 (338)
T 3pfi_A 97 LAAILT---NLSEGDILFIDEIHRLS---------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA 164 (338)
T ss_dssp HHHHHH---TCCTTCEEEEETGGGCC---------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG
T ss_pred HHHHHH---hccCCCEEEEechhhcC---------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc
Confidence 333333 23457899999999873 4445555555543210 11248999999999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
..+++++++||+.++.|++|+.+++..++..++..... .++++.+..|+..+.|
T Consensus 165 ~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G- 218 (338)
T 3pfi_A 165 GMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-------------------------TCEEKAALEIAKRSRS- 218 (338)
T ss_dssp GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------------------------EECHHHHHHHHHTTTT-
T ss_pred cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHHCc-
Confidence 99999999999999999999999999999988876433 2788999999997766
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
+++++..++..+...+.......|+.+++..++...
T Consensus 219 ~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 219 TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 667777777665545555566789999999888764
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=6.7e-21 Score=209.55 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=180.8
Q ss_pred CcccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC--CCeeeccCCCccc-
Q 006700 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAP- 425 (635)
Q Consensus 349 ~~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~--~~~~~l~~~~~~~- 425 (635)
....|...|+++||++++++.+..++..+... ..+++++|||||||||||++|+++|+.++ .+|+.++++++..
T Consensus 28 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~---~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 28 ESGLAKQAASGLVGQENAREACGVIVELIKSK---KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred cccChhhchhhccCHHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 34567778999999999999999888776543 34567899999999999999999999999 8999999988765
Q ss_pred chhhHHHHHHHHHHHHh--hcCCcEEEEecCchhhhhhccccc-------------------------------------
Q 006700 426 LGAQAVTKIHEIFDWAK--KSKKGLLLFIDEADAFLCERNSIH------------------------------------- 466 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~--~~~~~~vL~iDEid~l~~~r~~~~------------------------------------- 466 (635)
..+.... +...|..+. ....|+||||||+|.+++++....
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 3344444 888888872 223478999999988875432210
Q ss_pred ---------------------------------------Cc-H-------------------------------------
Q 006700 467 ---------------------------------------MS-E------------------------------------- 469 (635)
Q Consensus 467 ---------------------------------------~~-~------------------------------------- 469 (635)
.+ .
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i 263 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQL 263 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC----------------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhh
Confidence 00 0
Q ss_pred -------------------------------------------HHHHHHHHHHHHhCCCCCCEEEEEEeCC---------
Q 006700 470 -------------------------------------------AQRSALNALLFRTGDQSRDIVLVLATNR--------- 497 (635)
Q Consensus 470 -------------------------------------------~~~~~L~~ll~~~~~~~~~viiI~ttN~--------- 497 (635)
.....++.|+..+++++.+ +||++||.
T Consensus 264 ~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~ 342 (456)
T 2c9o_A 264 MKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTE 342 (456)
T ss_dssp -------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccc
Confidence 0013567777778777777 46656643
Q ss_pred ----CCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHH
Q 006700 498 ----PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573 (635)
Q Consensus 498 ----~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 573 (635)
+..+++.++||| ..+.|++|+.+++..++...+..... .++++.+..|+.
T Consensus 343 ~~~~~~~l~~~i~sR~-~~~~~~~~~~~e~~~iL~~~~~~~~~-------------------------~~~~~~~~~i~~ 396 (456)
T 2c9o_A 343 DITSPHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQTEGI-------------------------NISEEALNHLGE 396 (456)
T ss_dssp SCEEETTCCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHH
T ss_pred cccccccCChhHHhhc-ceeeCCCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHH
Confidence 678999999999 55799999999999999988764332 378999999999
Q ss_pred Hc-CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 574 KT-EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 574 ~t-~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
.+ .| ++|....++..+...++..+...||.++|..++..+..
T Consensus 397 ~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 397 IGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 87 67 88888888887777787777789999999999987654
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=8.3e-24 Score=247.30 Aligned_cols=219 Identities=28% Similarity=0.445 Sum_probs=172.7
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcc-----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~-----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~ 425 (635)
..+...|++++|.+.+++.|..++...... ..+..++.++||+||||||||++|++||..++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 456678999999999999998765432111 122346678999999999999999999999999999999998764
Q ss_pred -chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc--CcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006700 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 500 (635)
Q Consensus 426 -~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~--~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~ 500 (635)
+.+.....+..+|..+.... |+||||||||.++..+.... .......+++.||..++ ....+++||+|||.++.
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 55667788899999988766 68999999999988775432 23456788899998886 34567899999999999
Q ss_pred CcHHHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 501 LDSAITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 501 l~~~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
+|+++++ ||+..|+|++|+.++|..||+.++..... ..+..+..|+..+.||
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--------------------------~~~~~l~~la~~t~g~ 682 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--------------------------AKDVDLEFLAKMTNGF 682 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------------------CCCCSCSCGGGSSS
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC--------------------------CcccCHHHHHHhcccc
Confidence 9999999 99999999999999999999988765433 1122355677889999
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 006700 579 SGREIAKLMASVQAAVYA 596 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~ 596 (635)
||+||..+|..+...+..
T Consensus 683 sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 683 SGADLTEICQRACKLAIR 700 (806)
T ss_dssp CCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999866665554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=2.1e-21 Score=201.97 Aligned_cols=225 Identities=24% Similarity=0.287 Sum_probs=159.0
Q ss_pred ccccChHHHHHHHHHHHHHhcc-------cccCCCCceEEEecCCCCChHHHHHHHHHHhC-------CCeeeccCCCcc
Q 006700 359 DIILHPSLQRRIQHLAKATANT-------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDVA 424 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~-------~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~-------~~~~~l~~~~~~ 424 (635)
+++|++.+++.|..++...... .....+..++||+||||||||++|+++++.++ .+++.+++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 7999999999999887754321 12245566899999999999999999999883 378888887765
Q ss_pred c-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----
Q 006700 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 499 (635)
Q Consensus 425 ~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---- 499 (635)
. +.+.....+..+|..+. ++||||||+|.++..++....+ ...++.|+..++....+++||+++|...
T Consensus 112 ~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~~~---~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERDYG---QEAIEILLQVMENNRDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---CCT---HHHHHHHHHHHHHCTTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCccccc---HHHHHHHHHHHhcCCCCEEEEEeCChHHHHHH
Confidence 4 44555666777777663 6799999999997655433333 3455566666665667889999998653
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE-- 576 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~-- 576 (635)
.++|++++||+.++.|++|+.+++..|+..++..... .++++.+..++..+.
T Consensus 185 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~-------------------------~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 185 FQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNY-------------------------QMTPEAETALRAYIGLR 239 (309)
T ss_dssp HHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTC-------------------------EECHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999987543 278888888887632
Q ss_pred -----CCCHHHHHHHHHHHHHHH----HcCCCCccCHHHHHHHHHHHH
Q 006700 577 -----GFSGREIAKLMASVQAAV----YARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 577 -----G~sgrdI~~L~~~~q~aa----~~s~~~~lt~~~i~~~l~~~~ 615 (635)
..++|++..++..+.... .......++.+++..+...-+
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~ 287 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDI 287 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHh
Confidence 224666666665433221 112345677777765544433
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=5.4e-21 Score=198.36 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=159.6
Q ss_pred CccccChHHHHHHHHHHHHH-hcc-----cccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chh
Q 006700 358 GDIILHPSLQRRIQHLAKAT-ANT-----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~-~~~-----~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~ 428 (635)
..++|++.+++.+...+... ... .....++.++||+||||||||++|+++++.++.+++.++|+.+.. .+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 56999999999998776542 110 011234568999999999999999999999999999999887653 233
Q ss_pred hHHHHHHHHHHHH----hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC----------CCCCEEEEEE
Q 006700 429 QAVTKIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD----------QSRDIVLVLA 494 (635)
Q Consensus 429 ~~~~~l~~~f~~a----~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~----------~~~~viiI~t 494 (635)
.....+..++..+ ....+++||||||+|.+.......+.......+.+.|+..++. ...+++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3334455555422 1112368999999999976654333222222334555555443 2347888888
Q ss_pred e----CCCCCCcHHHHccccceEecCCCCHHHHHHHHHH----HHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHH
Q 006700 495 T----NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDN 566 (635)
Q Consensus 495 t----N~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (635)
+ +.+..+++++++||+.++.|++|+.+++..|+.. ++..+.. .+......+ .++++
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~ 238 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA-------------LMATEGVNI---AFTTD 238 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH-------------HHHHTTCEE---EECHH
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH-------------HHHhcCCee---ccCHH
Confidence 5 4677899999999998899999999999999984 3322211 111111111 28999
Q ss_pred HHHHHHHHcC-------CCCHHHHHHHHHHHHHH-HH-c--C-CCC-ccCHHHHHHHHHHH
Q 006700 567 VIQEAARKTE-------GFSGREIAKLMASVQAA-VY-A--R-PDC-VLDSQLFREVVEYK 614 (635)
Q Consensus 567 ~l~~la~~t~-------G~sgrdI~~L~~~~q~a-a~-~--s-~~~-~lt~~~i~~~l~~~ 614 (635)
++..|+..+. +.+.|++..++..+-.. ++ . . +.. .||.+++..++...
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 9999998872 34777777777644321 11 1 1 112 49999999888753
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=6e-20 Score=192.10 Aligned_cols=217 Identities=20% Similarity=0.286 Sum_probs=163.8
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 432 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~ 432 (635)
.+..|+++||.+..+..+...+...... ..++.++||+||||||||++|+++++.++.+++.++|+.+... .
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-----~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-----G 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-----H
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-----H
Confidence 3447899999999999998877655432 2334579999999999999999999999999999988776431 2
Q ss_pred HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------C---------CCCCEEEEEEeCC
Q 006700 433 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------D---------QSRDIVLVLATNR 497 (635)
Q Consensus 433 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------~---------~~~~viiI~ttN~ 497 (635)
.+...|.. ....+++|||||++.+. ...+..|..++.... . ...++++|++||.
T Consensus 79 ~l~~~l~~--~~~~~~~l~lDEi~~l~---------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 79 DLAAILAN--SLEEGDILFIDEIHRLS---------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp HHHHHHTT--TCCTTCEEEETTTTSCC---------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred HHHHHHHH--hccCCCEEEEECCcccc---------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 23333321 13457899999999873 444555555555431 0 1136889999999
Q ss_pred CCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006700 498 PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEG 577 (635)
Q Consensus 498 ~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G 577 (635)
+..+++.+.+||+.++.|++|+.+++..++..++..... .++++.+..|+..+.|
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G 202 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-------------------------RITEEAALEIGRRSRG 202 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CCCHHHHHHHHHHSCS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHccC
Confidence 999999999999889999999999999999988765432 2788999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 578 FSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 578 ~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
+++++..++..+...+.......|+.+++..++...
T Consensus 203 -~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 203 -TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp -CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 567888777755544444456689999998887654
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.83 E-value=6.8e-20 Score=213.86 Aligned_cols=202 Identities=17% Similarity=0.248 Sum_probs=145.4
Q ss_pred CccccChHHHHHHHHHHHHHhcccc-cCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKI-HQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~-~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
..++|++.+++.+...+.....+.. +..|..++||+||||||||++|++||+.+ +.+|+.++|+.+........+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 6799999999999888877665433 34555689999999999999999999998 6789999998876532222222
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCCC-----
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPGD----- 500 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~~~----- 500 (635)
+.+ +....+++||||||||.+ +...+..|..+++.-. ..+.+++||+|||.+..
T Consensus 571 l~~----~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 571 LTE----KVRRKPYSVVLLDAIEKA---------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp CHH----HHHHCSSSEEEEECGGGS---------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred hhH----HHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 222 334456899999999977 3455555665555421 14567899999997654
Q ss_pred -------CcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHH
Q 006700 501 -------LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573 (635)
Q Consensus 501 -------l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 573 (635)
++|.|++||+.+|.|++|+.+++..|+..++..+.. .+......+ .++++++..|+.
T Consensus 638 ~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~-------------~~~~~~~~~---~~~~~a~~~l~~ 701 (758)
T 3pxi_A 638 MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTK-------------RLKEQDLSI---ELTDAAKAKVAE 701 (758)
T ss_dssp HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHH-------------HHHTTTCEE---EECHHHHHHHHG
T ss_pred HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHH-------------HHHhCCCeE---EECHHHHHHHHH
Confidence 889999999999999999999999999999887643 122111222 389999999987
Q ss_pred HcC--CCCHHHHHHHHH
Q 006700 574 KTE--GFSGREIAKLMA 588 (635)
Q Consensus 574 ~t~--G~sgrdI~~L~~ 588 (635)
... .++.|+|+.++.
T Consensus 702 ~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 702 EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp GGCCTTTTTTTHHHHHH
T ss_pred hCCCCCCCChHHHHHHH
Confidence 533 345566666654
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.2e-19 Score=175.75 Aligned_cols=203 Identities=20% Similarity=0.277 Sum_probs=148.1
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~~ 427 (635)
++..|++++|++.....+...+.. ...+++||+||||||||++++.+++.+ ...++.++++.....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 82 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI- 82 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH-
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh-
Confidence 345688999999999888776642 122359999999999999999999986 345666666543321
Q ss_pred hhHHHHHHHHHHHHhh-----cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCc
Q 006700 428 AQAVTKIHEIFDWAKK-----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~-----~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~ 502 (635)
..+...+..... ...+.||||||+|.+. ......|..++ +....++++|++||.+..++
T Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~l~~~l---~~~~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 83 ----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------ADAQAALRRTM---EMYSKSCRFILSCNYVSRII 146 (226)
T ss_dssp ----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC---------HHHHHHHHHHH---HHTTTTEEEEEEESCGGGSC
T ss_pred ----HHHHHHHHHHhcccCCCccCceEEEEeChhhcC---------HHHHHHHHHHH---HhcCCCCeEEEEeCChhhcC
Confidence 112222222111 2457899999999873 33334444444 33456789999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+.+.+||. .+.|++|+.++...++..++..... .++++.+..|+..+.| +
T Consensus 147 ~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g----~ 196 (226)
T 2chg_A 147 EPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV-------------------------KITEDGLEALIYISGG----D 196 (226)
T ss_dssp HHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHHHHTT----C
T ss_pred HHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----C
Confidence 99999995 9999999999999999988765443 2788899999998877 6
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 583 IAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 583 I~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
++.+++.++.++... ..||.++++.++.
T Consensus 197 ~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 197 FRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 666666666666554 6899999999875
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.83 E-value=2.5e-20 Score=195.47 Aligned_cols=211 Identities=18% Similarity=0.292 Sum_probs=148.3
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVT 432 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~ 432 (635)
.+..|++++|++.+...+...+. .+..++.+||+||||||||++++++++.++.+++.+++++.. ..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~-------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~------~~ 87 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITS-------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK------ID 87 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHH-------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC------HH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHH-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC------HH
Confidence 34678999999999988887765 233445688899999999999999999999999999987643 22
Q ss_pred HHHHHHHH-Hhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHcc
Q 006700 433 KIHEIFDW-AKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDR 508 (635)
Q Consensus 433 ~l~~~f~~-a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R 508 (635)
.+...+.. +.. ...++||||||+|.+.+ ...+..|..++.. ...+++||+|||.+..+++.+.+|
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~L~~~le~---~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 88 FVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRHLRSFMEA---YSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHHHHHHHHH---HGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHHHHHHHHh---CCCCcEEEEEeCCccccCHHHHhh
Confidence 33332322 222 22578999999998841 3344445555443 345688999999999999999999
Q ss_pred ccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH-HHHHHHHHHcCCCCHHHHHHHH
Q 006700 509 IDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD-NVIQEAARKTEGFSGREIAKLM 587 (635)
Q Consensus 509 ~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~G~sgrdI~~L~ 587 (635)
| .++.|++|+.+++..|+..++..... .+. ..++ .+++ +.+..|+..+.| |++.++
T Consensus 157 ~-~~i~~~~~~~~e~~~il~~~~~~l~~-------------~~~--~~~~---~~~~~~~~~~l~~~~~g----d~R~a~ 213 (324)
T 3u61_B 157 C-RVITFGQPTDEDKIEMMKQMIRRLTE-------------ICK--HEGI---AIADMKVVAALVKKNFP----DFRKTI 213 (324)
T ss_dssp S-EEEECCCCCHHHHHHHHHHHHHHHHH-------------HHH--HHTC---CBSCHHHHHHHHHHTCS----CTTHHH
T ss_pred C-cEEEeCCCCHHHHHHHHHHHHHHHHH-------------HHH--HcCC---CCCcHHHHHHHHHhCCC----CHHHHH
Confidence 9 68999999999998888877655321 111 1122 2666 899999999877 888888
Q ss_pred HHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 588 ASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 588 ~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+.++.++ ....||.+++..++..
T Consensus 214 ~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 214 GELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHG---GGTCBCC---------
T ss_pred HHHHHHh---ccCCCCHHHHHHHhCC
Confidence 8888877 2345888888776654
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=6.4e-20 Score=214.45 Aligned_cols=238 Identities=25% Similarity=0.424 Sum_probs=183.0
Q ss_pred cccccCCccccChHHHHHHHHHHHH-Hhccc----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~- 425 (635)
.+...|++|+|.+..++.|..++.. +.... ....++.++||+||||||||++|++|+..++.+++.++|.++..
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4567899999999999999888765 33321 13456779999999999999999999999999999999987754
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCcH
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 503 (635)
+.+.....+..+|..+.... +++|||||+|.+++.+.... ......++..++..++ ....++++|+|||.++.+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 55667778889998887654 79999999999988765432 3444556666666664 23467899999999999999
Q ss_pred HHHc--cccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 504 AITD--RIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 504 ~l~~--R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+ ||+..+.++.|+.++|..|+..++..+.. ..+..+..++..+.||+++
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l--------------------------~~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--------------------------ADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC--------------------------CTTCCTHHHHHSCSSCCHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC--------------------------cccchhHHHHHhhcCcchH
Confidence 9998 99999999999999999999988766543 2233467889999999999
Q ss_pred HHHHHHHHHHHHHHcC-----------------CCCccCHHHHHHHHHHHHhh
Q 006700 582 EIAKLMASVQAAVYAR-----------------PDCVLDSQLFREVVEYKVEE 617 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s-----------------~~~~lt~~~i~~~l~~~~~~ 617 (635)
++..++..+...+... ....++.+++..++....+.
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 9999986443333221 11245666777777665543
No 40
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=2.2e-19 Score=196.39 Aligned_cols=210 Identities=25% Similarity=0.355 Sum_probs=148.6
Q ss_pred cccCCccccChHHH---HHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhH
Q 006700 354 IKNNGDIILHPSLQ---RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430 (635)
Q Consensus 354 ~~~~~~vig~~~~~---~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~ 430 (635)
+..|+++||++.+. ..|...+.. .. +.++||+||||||||++|+.|++.++.+|+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~---~~-----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~------ 87 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA---GH-----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG------ 87 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH---TC-----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC------
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc---CC-----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC------
Confidence 45789999999999 555554442 21 25799999999999999999999999999998875422
Q ss_pred HHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCcHHH
Q 006700 431 VTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAI 505 (635)
Q Consensus 431 ~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~tt--N~~~~l~~~l 505 (635)
...+..++..+.. ...++||||||||.|. ...+..| +..++. +.++||++| |....+++++
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~---------~~~q~~L---L~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFN---------KSQQDAF---LPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------CC---HHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC---------HHHHHHH---HHHHhc--CceEEEecCCCCcccccCHHH
Confidence 2334444444432 3457899999999883 2233333 333332 457777766 4556899999
Q ss_pred HccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHH
Q 006700 506 TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAK 585 (635)
Q Consensus 506 ~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~ 585 (635)
++|| .++.|++|+.+++..++..++..... .-. ...+ .++++++..|+..+.| |++.
T Consensus 154 ~sR~-~v~~l~~l~~edi~~il~~~l~~~~~-~~~--------------~~~~---~i~~~al~~L~~~~~G----d~R~ 210 (447)
T 3pvs_A 154 LSRA-RVYLLKSLSTEDIEQVLTQAMEDKTR-GYG--------------GQDI---VLPDETRRAIAELVNG----DARR 210 (447)
T ss_dssp HTTE-EEEECCCCCHHHHHHHHHHHHHCTTT-SST--------------TSSE---ECCHHHHHHHHHHHCS----CHHH
T ss_pred hCce-eEEeeCCcCHHHHHHHHHHHHHHHhh-hhc--------------cccC---cCCHHHHHHHHHHCCC----CHHH
Confidence 9999 58889999999999999999876432 000 0111 3899999999999877 6666
Q ss_pred HHHHHHHHHHcCC-----CCccCHHHHHHHHHHH
Q 006700 586 LMASVQAAVYARP-----DCVLDSQLFREVVEYK 614 (635)
Q Consensus 586 L~~~~q~aa~~s~-----~~~lt~~~i~~~l~~~ 614 (635)
+++.++.++.... ...||.+++.+++...
T Consensus 211 lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 211 ALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 6666666655432 2579999999988654
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=2e-19 Score=184.02 Aligned_cols=206 Identities=23% Similarity=0.300 Sum_probs=139.0
Q ss_pred CccccChHHHHHHHH----HHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc--cchhhHH
Q 006700 358 GDIILHPSLQRRIQH----LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA--PLGAQAV 431 (635)
Q Consensus 358 ~~vig~~~~~~~l~~----l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~--~~~~~~~ 431 (635)
.+++|.+...+.+.. +...+... ...+++++||+||||||||++|+++|..++.+|+.+++++.. .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 567888776655554 33333321 234567899999999999999999999999999999876521 1223334
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCchhhhhhccc-ccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcH-HHHccc
Q 006700 432 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS-IHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AITDRI 509 (635)
Q Consensus 432 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~-~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~-~l~~R~ 509 (635)
..+..+|..+... +++||||||+|.+++.+.. ..........|..++........+++||+|||.++.+++ .+.+||
T Consensus 111 ~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 111 QAMKKIFDDAYKS-QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 189 (272)
T ss_dssp HHHHHHHHHHHTS-SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTS
T ss_pred HHHHHHHHHHHhc-CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhccc
Confidence 5667778776543 4789999999999765442 222333333333333222234567889999999988887 678899
Q ss_pred cceEecCCCCH-HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH-HHHHHH
Q 006700 510 DEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR-EIAKLM 587 (635)
Q Consensus 510 d~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr-dI~~L~ 587 (635)
+..+.||+++. +++..++.. .. .++++.+..|+..+.||+.. +++.++
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~----~~--------------------------~~~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALEL----LG--------------------------NFKDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHH----HT--------------------------CSCHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred ceEEcCCCccHHHHHHHHHHh----cC--------------------------CCCHHHHHHHHHHhcCCCccccHHHHH
Confidence 88899887765 444434332 11 26888999999999887211 477777
Q ss_pred HHHHHHHHc
Q 006700 588 ASVQAAVYA 596 (635)
Q Consensus 588 ~~~q~aa~~ 596 (635)
+.++.+...
T Consensus 240 ~~l~~a~~~ 248 (272)
T 1d2n_A 240 MLIEMSLQM 248 (272)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhhh
Confidence 777776544
No 42
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=9e-19 Score=182.08 Aligned_cols=208 Identities=15% Similarity=0.219 Sum_probs=145.5
Q ss_pred CccccChHHHHHHHHHHHHHhcc-cccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchh--hHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA--QAV 431 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~-~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~--~~~ 431 (635)
..++|++.+++.+...+...... ..+..|..++||+||||||||++|++|+..+ +.+++.++|+.+..... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 67899999999998887765543 3334455689999999999999999999998 45688888776543110 000
Q ss_pred -------H-HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEe
Q 006700 432 -------T-KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLAT 495 (635)
Q Consensus 432 -------~-~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~tt 495 (635)
+ .....+..+....+++||||||+|.+ +...+..|..++.... ....+++||+||
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA---------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred CCCCccccccccchHHHHHHhCCCeEEEEeChhhc---------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 0 00012333334455799999999987 3455555555554422 112478899999
Q ss_pred CC--------------------------CCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhh
Q 006700 496 NR--------------------------PGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 549 (635)
Q Consensus 496 N~--------------------------~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~ 549 (635)
|. ...++++|++||+.++.|++|+.+++..|+..++..+..
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~------------- 234 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA------------- 234 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH-------------
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH-------------
Confidence 98 446889999999999999999999999999999877543
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHcC--CCCHHHHHHHHHHH
Q 006700 550 LFKKQQQKITIKDLSDNVIQEAARKTE--GFSGREIAKLMASV 590 (635)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~la~~t~--G~sgrdI~~L~~~~ 590 (635)
.+... ... ..++++++..|+.... .++.|+|..++..+
T Consensus 235 ~~~~~--~~~-~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 235 RLAEK--RIS-LELTEAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp HHHTT--TCE-EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred HHHhC--CcE-EEeCHHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 11110 111 1389999999998865 45677888777543
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=9.6e-19 Score=184.00 Aligned_cols=239 Identities=15% Similarity=0.098 Sum_probs=157.7
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chhh-HH
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQ-AV 431 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~~-~~ 431 (635)
.+.+++|++.++..+...+.. .+++||+||||||||++|++++..++.+++.+++..... +.+. ..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~----------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~ 94 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT----------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIY 94 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH----------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEE
T ss_pred hccceeCcHHHHHHHHHHHHc----------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceee
Confidence 458899999998887665442 136999999999999999999999999998888742111 0000 00
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCC----
Q 006700 432 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPG---- 499 (635)
Q Consensus 432 ~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~~---- 499 (635)
......|.+....-.++||||||++.+ +...+..|..++.... ..+.+++||+|+|..+
T Consensus 95 ~~~~~~~~~~~g~l~~~vl~iDEi~~~---------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~ 165 (331)
T 2r44_A 95 NQHKGNFEVKKGPVFSNFILADEVNRS---------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGT 165 (331)
T ss_dssp ETTTTEEEEEECTTCSSEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCC
T ss_pred cCCCCceEeccCcccccEEEEEccccC---------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCc
Confidence 000000000000001369999999987 3444555555554421 1345688888998554
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc---
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT--- 575 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--- 575 (635)
.+++++++||+..+.|++|+.+++..|+..++...................+......+ .++++.+..++..+
T Consensus 166 ~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v---~~~~~~~~~i~~~~~~~ 242 (331)
T 2r44_A 166 YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKV---TISESLEKYIIELVFAT 242 (331)
T ss_dssp CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTC---BCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHH
Confidence 38999999998889999999999999999988653220000000000001111111122 37888888887643
Q ss_pred ----------------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 576 ----------------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 576 ----------------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
.|+|+|.+..++..+++.+...+...++.+++..++...+.
T Consensus 243 r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 243 RFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred hccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 26699999999999998888877788999999999998764
No 44
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=8.6e-19 Score=187.00 Aligned_cols=236 Identities=16% Similarity=0.249 Sum_probs=152.7
Q ss_pred ccccChHHHHHHHHHHHHHhc-cc------ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc--chhh
Q 006700 359 DIILHPSLQRRIQHLAKATAN-TK------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQ 429 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~-~~------~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~--~~~~ 429 (635)
.|+|++.+++.+...+..... .. ....++.++||+||||||||++|++||..++.+|+.++|+.+.. +.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 479999999999877642221 11 11135678999999999999999999999999999999988754 2233
Q ss_pred -HHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccCcH--HHHHHHHHHHHHhCC-------------------
Q 006700 430 -AVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHMSE--AQRSALNALLFRTGD------------------- 484 (635)
Q Consensus 430 -~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~~~--~~~~~L~~ll~~~~~------------------- 484 (635)
....+..+|..+. ....++||||||+|.+.+.+.....+. ....+.+.|+..++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 3455666666541 112378999999999987654432111 111234444444331
Q ss_pred --CCCCEEEEEEeCCC----------CC-----------------------------------CcHHHHccccceEecCC
Q 006700 485 --QSRDIVLVLATNRP----------GD-----------------------------------LDSAITDRIDEVIEFPL 517 (635)
Q Consensus 485 --~~~~viiI~ttN~~----------~~-----------------------------------l~~~l~~R~d~~i~~~~ 517 (635)
...|++||+++|.. .. ++|+|++||+.++.|++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 22455666666642 11 78999999999999999
Q ss_pred CCHHHHHHHHHH----HHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Q 006700 518 PREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK--TEGFSGREIAKLMASVQ 591 (635)
Q Consensus 518 p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~G~sgrdI~~L~~~~q 591 (635)
|+.+++.+|+.. ++..+.. .+......+ .+++++++.|+.. ...+..|+|++++..+-
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~-------------~~~~~~~~l---~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQA-------------LFNLEGVDL---EFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHH-------------HHHTTTCEE---EECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------HHHhcCceE---EECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 999999999987 4443321 111111122 2899999999964 34556789998886443
Q ss_pred HHHHc-C--CC----CccCHHHHHHH
Q 006700 592 AAVYA-R--PD----CVLDSQLFREV 610 (635)
Q Consensus 592 ~aa~~-s--~~----~~lt~~~i~~~ 610 (635)
..... - .+ ..||.++|++.
T Consensus 320 ~~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 320 LDTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred HHHHHhcccccCCceeEEcHHHHhCc
Confidence 33322 1 11 15676666553
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.79 E-value=5.7e-18 Score=167.59 Aligned_cols=209 Identities=20% Similarity=0.242 Sum_probs=147.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec--cCC---------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM--TGG--------- 421 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l--~~~--------- 421 (635)
.+..|++++|.+...+.|...+.. +..++.++|+||||||||++++.+++.++...... .+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 345678999999999988876653 22334799999999999999999999875432111 000
Q ss_pred -----Ccccc---hhhHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 006700 422 -----DVAPL---GAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 490 (635)
Q Consensus 422 -----~~~~~---~~~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vi 490 (635)
++..+ .......+..++..... ...+.||||||+|.+. . ..++.++..+.....+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------~---~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------R---HSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------H---HHHHHHHHHHHSCCTTEE
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------H---HHHHHHHHHHhcCCCceE
Confidence 11111 11223344455544321 2346899999999862 2 234455555555667899
Q ss_pred EEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHH
Q 006700 491 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE 570 (635)
Q Consensus 491 iI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 570 (635)
+|++||.+..+++.+.+|+ ..+.|++|+.++...++..++..... .++++.+..
T Consensus 159 ~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~-------------------------~~~~~~~~~ 212 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI-------------------------AHEPRALQL 212 (250)
T ss_dssp EEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHH
T ss_pred EEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHH
Confidence 9999999999999999997 89999999999999999998865432 278889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 571 AARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 571 la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
|+..+.| +++.+..++..+ +.. ....||.+++++++
T Consensus 213 l~~~~~G-~~~~~~~~~~~~---~~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 213 LARAAEG-SLRDALSLTDQA---IAS-GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHTT-CHHHHHHHHHHH---HTT-TTSSBCHHHHHHHS
T ss_pred HHHHcCC-CHHHHHHHHHHH---Hhc-cCceecHHHHHHHh
Confidence 9999988 677777766533 322 23479999998875
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=3.9e-18 Score=181.92 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=161.9
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---------CCCeeeccCCCc
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGDV 423 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---------~~~~~~l~~~~~ 423 (635)
+...+++++|.+.....+...+..... ...+++++|+||||||||++++.+++.+ +.+++.++|...
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR----GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS----SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 334458899999998888776543211 2344689999999999999999999988 778888888764
Q ss_pred ccch-----------------h-hHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC
Q 006700 424 APLG-----------------A-QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485 (635)
Q Consensus 424 ~~~~-----------------~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~ 485 (635)
.... + .....+..++........++||||||+|.+...+ ..+..|..++......
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc
Confidence 3210 0 1122234444444445557899999999985321 1356777777766533
Q ss_pred --CCCEEEEEEeCCC---CCCcHHHHccccc-eEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh
Q 006700 486 --SRDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559 (635)
Q Consensus 486 --~~~viiI~ttN~~---~~l~~~l~~R~d~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (635)
..++++|++||.+ ..+++.+.+||.. .+.|++|+.+++..|+..++..... .
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--------------------~-- 220 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN--------------------P-- 220 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC--------------------T--
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc--------------------C--
Confidence 5678999999977 6889999999986 8999999999999999998865221 0
Q ss_pred ccCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 560 IKDLSDNVIQEAARKTE---GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 560 ~~~~~~~~l~~la~~t~---G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
..++++.+..++..+. | +++.+..++..+-..+...+...||.+++..++.....
T Consensus 221 -~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 221 -GVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp -TTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 0266778888888876 6 55566666655544444446678999999999887644
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.78 E-value=1.6e-18 Score=202.40 Aligned_cols=202 Identities=16% Similarity=0.249 Sum_probs=145.6
Q ss_pred CccccChHHHHHHHHHHHHHhccc-ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc-----------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------- 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------- 425 (635)
..|+|++.++..+...+.....+. .+..|..++||+||||||||++|+++|..++.+++.++|+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 679999999999988777655432 34456678999999999999999999999999999998877532
Q ss_pred ---chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--C------CCCCEEEEEE
Q 006700 426 ---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--D------QSRDIVLVLA 494 (635)
Q Consensus 426 ---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~------~~~~viiI~t 494 (635)
.+.+..+.+.+.+ ...+++||||||||.+ +......|..++..-. + +..+++||+|
T Consensus 538 ~g~~g~~~~~~l~~~~----~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAV----IKHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SCSHHHHHTTHHHHHH----HHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred CCCcCccccchHHHHH----HhCCCcEEEEeCcccc---------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 1222222333333 3455899999999976 2344444444443311 0 1367999999
Q ss_pred eCCCC-------------------------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhh
Q 006700 495 TNRPG-------------------------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGH 549 (635)
Q Consensus 495 tN~~~-------------------------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~ 549 (635)
||.+. .++++|++|||.+|.|++|+.+++..|+..++..+..
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~------------- 671 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV------------- 671 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH-------------
Confidence 99754 6789999999999999999999999999999886532
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Q 006700 550 LFKKQQQKITIKDLSDNVIQEAARKT--EGFSGREIAKLMA 588 (635)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~la~~t--~G~sgrdI~~L~~ 588 (635)
.+......+ .++++++..|+... .+++.|+|..++.
T Consensus 672 ~~~~~~~~~---~~~~~a~~~l~~~~~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 672 QLDQKGVSL---EVSQEARNWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_dssp HHHHTTEEE---EECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred HHHHCCcEE---EeCHHHHHHHHHhCCCcCCCchHHHHHHH
Confidence 111111112 38999999999764 2445778877765
No 48
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.78 E-value=1.6e-18 Score=180.39 Aligned_cols=207 Identities=22% Similarity=0.273 Sum_probs=149.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++.+.+.+...+.. + ..+++||+||||||||++|+.+++.+ +.+++.+++++.....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------K-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------T-CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------C-CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 445789999999999888765431 1 22359999999999999999999987 3346777776543211
Q ss_pred hhHHHHHHHHHHHHh-hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHH
Q 006700 428 AQAVTKIHEIFDWAK-KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAIT 506 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~-~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~ 506 (635)
.....+........ ...++.||||||+|.+. . ...+.|+..++..+.+++||++||.+..+.+.+.
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~---~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 84 -VVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------A---DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC---------H---HHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC---------H---HHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 01111111110100 11447899999999873 2 2355566667777788999999999999999999
Q ss_pred ccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH
Q 006700 507 DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586 (635)
Q Consensus 507 ~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 586 (635)
+|| ..+.|++|+.+++..++..++..... .++++.+..|+..+.| +++.+
T Consensus 151 sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~i~~~~l~~l~~~~~G----~~r~~ 200 (319)
T 2chq_A 151 SRC-AVFRFKPVPKEAMKKRLLEICEKEGV-------------------------KITEDGLEALIYISGG----DFRKA 200 (319)
T ss_dssp TTC-EEEECCCCCHHHHHHHHHHHHHTTCC-------------------------CBCHHHHHHHHHTTTT----CHHHH
T ss_pred hhC-eEEEecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----CHHHH
Confidence 999 59999999999999999988865433 2788999999988766 77777
Q ss_pred HHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 587 MASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 587 ~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
++.++.++.. ...||.+++..++.
T Consensus 201 ~~~l~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 201 INALQGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHS--SSCBCHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHC
Confidence 7777776664 24688877776554
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.8e-18 Score=182.89 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=143.7
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC------CCeeeccCCCcccc
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAPL 426 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~------~~~~~l~~~~~~~~ 426 (635)
.+..|++++|++.+.+.|...+. ...+.++||+||||||||++++++++.++ ..++.+++++....
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~--------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 103 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK--------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT--------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh--------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch
Confidence 45578999999999888766543 12223599999999999999999999864 35667777664321
Q ss_pred hhhHHHHHHHHHHHH------------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 006700 427 GAQAVTKIHEIFDWA------------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLA 494 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a------------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~t 494 (635)
.........+... .....+.||||||+|.+. ...+.. |+..++....++.+|++
T Consensus 104 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~---------~~~~~~---Ll~~le~~~~~~~~il~ 169 (353)
T 1sxj_D 104 --SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT---------ADAQSA---LRRTMETYSGVTRFCLI 169 (353)
T ss_dssp --HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC---------HHHHHH---HHHHHHHTTTTEEEEEE
T ss_pred --HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC---------HHHHHH---HHHHHHhcCCCceEEEE
Confidence 1111111111110 112346799999999873 333333 44444444567889999
Q ss_pred eCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH
Q 006700 495 TNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK 574 (635)
Q Consensus 495 tN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 574 (635)
||.+..+.+.+.+|| ..+.|++|+.++...++...+..... .++++.+..|+..
T Consensus 170 ~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~i~~~~l~~l~~~ 223 (353)
T 1sxj_D 170 CNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENV-------------------------KCDDGVLERILDI 223 (353)
T ss_dssp ESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CCCHHHHHHHHHH
T ss_pred eCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCC-------------------------CCCHHHHHHHHHH
Confidence 999999999999999 58999999999999999988764332 2789999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCC----CccCHHHHHHHHH
Q 006700 575 TEGFSGREIAKLMASVQAAVYARPD----CVLDSQLFREVVE 612 (635)
Q Consensus 575 t~G~sgrdI~~L~~~~q~aa~~s~~----~~lt~~~i~~~l~ 612 (635)
+.| +++.+++.++.++...+. ..||.+++..++.
T Consensus 224 ~~G----~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 224 SAG----DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp TSS----CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred cCC----CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 887 455555555444322111 2699999988765
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=2.9e-18 Score=179.01 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=142.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-----CeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-----~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++.+.+.+...+.. + .++++||+||||||||++|+++++.+.. +++.+++++...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 89 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-------G-SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-- 89 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-------T-CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH--
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-------C-CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc--
Confidence 445789999999999988876653 1 2235999999999999999999998743 356666654211
Q ss_pred hhHHHHHHHHHHH-Hhh----cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCc
Q 006700 428 AQAVTKIHEIFDW-AKK----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 428 ~~~~~~l~~~f~~-a~~----~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~ 502 (635)
...+...+.. +.. ...+.||||||+|.+. .... +.|+..++..+.+++||++||.+..+.
T Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~---~~L~~~le~~~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 90 ---INVIREKVKEFARTKPIGGASFKIIFLDEADALT---------QDAQ---QALRRTMEMFSSNVRFILSCNYSSKII 154 (327)
T ss_dssp ---HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC---------HHHH---HHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ---hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC---------HHHH---HHHHHHHHhcCCCCeEEEEeCCccccC
Confidence 1111111111 111 1457899999999873 3333 444444444567889999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+.+.+|| ..+.|++|+.++...++..++..... .++++.+..|+..+.| +
T Consensus 155 ~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g----~ 204 (327)
T 1iqp_A 155 EPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGL-------------------------ELTEEGLQAILYIAEG----D 204 (327)
T ss_dssp HHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------EECHHHHHHHHHHHTT----C
T ss_pred HHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHHCCC----C
Confidence 9999999 58999999999999999888765432 2788999999999877 6
Q ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 583 IAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 583 I~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
++.+++.++.++... ..||.+++..++
T Consensus 205 ~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 205 MRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 666666666655432 356666665544
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=2.4e-18 Score=184.35 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=145.4
Q ss_pred CccccChHHHHHHHHHHH----HHhccc------------------ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 358 GDIILHPSLQRRIQHLAK----ATANTK------------------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~----~~~~~~------------------~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
+.|+|++.+++.|...+. ....+. ....+..++||+||||||||++|++||+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 468999999999987662 111100 1123456899999999999999999999999999
Q ss_pred eeccCCCccc--c-hhhHHHHHHHHHHHHh---hcCCcEEEEecCchhhhhhcccccC-----cHHHHHHHHHHHHHhC-
Q 006700 416 AMMTGGDVAP--L-GAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCERNSIHM-----SEAQRSALNALLFRTG- 483 (635)
Q Consensus 416 ~~l~~~~~~~--~-~~~~~~~l~~~f~~a~---~~~~~~vL~iDEid~l~~~r~~~~~-----~~~~~~~L~~ll~~~~- 483 (635)
+.++|..+.. + +......+...+.... ....++||||||+|.+...+..... ....+..|..++....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999887653 2 2222334455554321 1124689999999999765332111 1113444444443110
Q ss_pred -----------------CCCCCEEEEEEeCC-----------------------------------------CCCCcHHH
Q 006700 484 -----------------DQSRDIVLVLATNR-----------------------------------------PGDLDSAI 505 (635)
Q Consensus 484 -----------------~~~~~viiI~ttN~-----------------------------------------~~~l~~~l 505 (635)
-...++++|+|+|. ...+.+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 01245678888772 11367999
Q ss_pred HccccceEecCCCCHHHHHHHHHH----HHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCC
Q 006700 506 TDRIDEVIEFPLPREEERFKLLKL----YLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE--GFS 579 (635)
Q Consensus 506 ~~R~d~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--G~s 579 (635)
.+||+.++.|++++.++...|+.. ++..+.. .+......+ .++++++..|+..+. +.+
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~a~~~l~~~~~~~~~~ 324 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQ-------------LFKMDEVDL---IFEEEAIKEIAQLALERKTG 324 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH-------------HHHTTTCEE---EECHHHHHHHHHHHHHTTCT
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHH-------------HHhhcCceE---EECHHHHHHHHHHhcccccC
Confidence 999999999999999999999873 3332211 111111122 288999999998753 246
Q ss_pred HHHHHHHHHHHHHHHHcC------CCCccCHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYAR------PDCVLDSQLFREVV 611 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s------~~~~lt~~~i~~~l 611 (635)
.|+|..++..+-..+... ....||.+++..+.
T Consensus 325 ~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 325 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 788888776443332221 11258888876643
No 52
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=2.9e-18 Score=192.23 Aligned_cols=230 Identities=18% Similarity=0.247 Sum_probs=147.5
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc----------c
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------L 426 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~----------~ 426 (635)
.++++|.++++..+...+........ .+..++||+||||||||++|++|+..++.++..++++.+.. +
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHH
Confidence 36799999999999765443222111 24568999999999999999999999999999998876432 1
Q ss_pred hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCC---------------CCCEEE
Q 006700 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ---------------SRDIVL 491 (635)
Q Consensus 427 ~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~---------------~~~vii 491 (635)
.+...+.+...|..+... +.||||||+|.+..... ....+.|+..++.. ..+++|
T Consensus 158 ig~~~~~~~~~~~~a~~~--~~vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 158 VGAMPGRIIQGMKKAGKL--NPVFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ------CHHHHHHTTCSS--SEEEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred hccCchHHHHHHHHhhcc--CCEEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 122334445556554333 34999999999864322 12344455544321 157899
Q ss_pred EEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHH
Q 006700 492 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 571 (635)
Q Consensus 492 I~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 571 (635)
|+|||.++.++++|++|| .+|.|+.|+.+++..|+..++-......... ....+ .++++++..|
T Consensus 228 I~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~------------~~~~i---~i~~~~l~~l 291 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGL------------KKSNL---QLRDQAILDI 291 (543)
T ss_dssp EEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTC------------CGGGC---EECHHHHHHH
T ss_pred EeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCC------------Ccccc---cCCHHHHHHH
Confidence 999999999999999999 5899999999999999998774321100000 01112 2789999998
Q ss_pred HHHcCC-CCHHHHHHHHHHHHHH----HHcC--CCCccCHHHHHHHHHHH
Q 006700 572 ARKTEG-FSGREIAKLMASVQAA----VYAR--PDCVLDSQLFREVVEYK 614 (635)
Q Consensus 572 a~~t~G-~sgrdI~~L~~~~q~a----a~~s--~~~~lt~~~i~~~l~~~ 614 (635)
+..+.+ .+.|+|+..+..+... +... ....||.+++..++...
T Consensus 292 ~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 292 IRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 874443 4566776655433222 2222 23468999998887643
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.77 E-value=1.4e-17 Score=175.83 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=149.9
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe----eeccCCCccc-
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY----AMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~----~~l~~~~~~~- 425 (635)
..+..+|++++|++.++..+.... ... ...++||+||||||||++|++++..++... ..++|.....
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~---~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 88 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA---VDP-----GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMI 88 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH---HCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGS
T ss_pred CCCCCCchhccChHHHHHHHHHHh---hCC-----CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccc
Confidence 345678999999999776643221 111 123599999999999999999999986311 0012211100
Q ss_pred ----------------------ch---hhHHHH--HHHHHHHHhh--------cCCcEEEEecCchhhhhhcccccCcHH
Q 006700 426 ----------------------LG---AQAVTK--IHEIFDWAKK--------SKKGLLLFIDEADAFLCERNSIHMSEA 470 (635)
Q Consensus 426 ----------------------~~---~~~~~~--l~~~f~~a~~--------~~~~~vL~iDEid~l~~~r~~~~~~~~ 470 (635)
.+ ....+. +...+..... ...++||||||++.+. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---------~~ 159 (350)
T 1g8p_A 89 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---------DH 159 (350)
T ss_dssp CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC---------HH
T ss_pred cchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC---------HH
Confidence 00 000000 1111211100 1126899999999873 44
Q ss_pred HHHHHHHHHHHh----CC------CCCCEEEEEEeCCCC-CCcHHHHccccceEecCCC-CHHHHHHHHHHHHHhhcCCC
Q 006700 471 QRSALNALLFRT----GD------QSRDIVLVLATNRPG-DLDSAITDRIDEVIEFPLP-REEERFKLLKLYLKKYLCSD 538 (635)
Q Consensus 471 ~~~~L~~ll~~~----~~------~~~~viiI~ttN~~~-~l~~~l~~R~d~~i~~~~p-~~~er~~Il~~~l~~~~~~~ 538 (635)
.+..|..++..- .. .+.+++||+|||..+ .+++++++||+..+.|++| +.+++..|+...+..... .
T Consensus 160 ~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~-~ 238 (350)
T 1g8p_A 160 IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD-P 238 (350)
T ss_dssp HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC-H
T ss_pred HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC-c
Confidence 455555555431 11 123789999999744 8999999999888999999 577777898875432110 0
Q ss_pred CCC-----CCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHH
Q 006700 539 EGD-----SSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF---SGREIAKLMASVQAAVYARPDCVLDSQLFREV 610 (635)
Q Consensus 539 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~---sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~ 610 (635)
... .........+........-..++++++..|+..+.+. +.|.+..++..+...+...+...||.+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a 318 (350)
T 1g8p_A 239 KAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRV 318 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred hhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 000 0000000000000000111148999999998876542 56888899888888887777778999999999
Q ss_pred HHHHHhh
Q 006700 611 VEYKVEE 617 (635)
Q Consensus 611 l~~~~~~ 617 (635)
+......
T Consensus 319 ~~~~l~~ 325 (350)
T 1g8p_A 319 ATMALSH 325 (350)
T ss_dssp HHHHHGG
T ss_pred HHHHHhh
Confidence 9987753
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.77 E-value=2.7e-18 Score=174.80 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=132.6
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccch--hh
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPLG--AQ 429 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~~--~~ 429 (635)
.+|+++||++.....+...+...... ..++||+||||||||++|++++..++ .+|+.++|+.+.... ..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHH
Confidence 46899999999888887766654432 24699999999999999999999885 689999988764310 00
Q ss_pred HHHHHHHHHHHHh-------hcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEE
Q 006700 430 AVTKIHEIFDWAK-------KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLA 494 (635)
Q Consensus 430 ~~~~l~~~f~~a~-------~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~t 494 (635)
..+.....|..+. ....+++|||||++.+ +...+..|..++..-. ....++.||+|
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~a 147 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA---------PMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCA 147 (265)
T ss_dssp HHCCC---------CCCCHHHHTTTSEEEEESGGGS---------CHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEE
T ss_pred hcCCcccccccccccccchhhhcCCcEEEEechHhc---------CHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEe
Confidence 0000001111100 0123679999999987 3445555655555421 12346889999
Q ss_pred eCCC-------CCCcHHHHccccc-eEecCCCCH--HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhc-cCC
Q 006700 495 TNRP-------GDLDSAITDRIDE-VIEFPLPRE--EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITI-KDL 563 (635)
Q Consensus 495 tN~~-------~~l~~~l~~R~d~-~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 563 (635)
||.+ ..+++.+.+||+. .+.+|++.. ++...|+.+++..+.. ..+... ..+
T Consensus 148 tn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~------------------~~~~~~~~~~ 209 (265)
T 2bjv_A 148 TNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCR------------------EIKLPLFPGF 209 (265)
T ss_dssp ESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHH------------------HTTCSSCCCB
T ss_pred cCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHH------------------HhCCCcccCc
Confidence 9974 3588999999953 455555543 4566677777765432 111111 248
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHH
Q 006700 564 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLF 607 (635)
Q Consensus 564 ~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i 607 (635)
+++++..|... +|+| +++.|.+.++.++..+.+..|+.+++
T Consensus 210 ~~~a~~~L~~~--~~~g-n~reL~~~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 210 TERARETLLNY--RWPG-NIRELKNVVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp CHHHHHHHHHS--CCTT-HHHHHHHHHHHHHHHHCCSSSCBCCC
T ss_pred CHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHhCCCCcCcHHHc
Confidence 99999999865 4544 77777777777665544556665554
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=6.2e-17 Score=170.68 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=157.1
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~ 433 (635)
...|++++|++.+...+...+.... .++.++.+++|+|||||||||++++++..++.++...+|..+.. + ..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~---~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-~----~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK---MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-Q----GD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH---HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-H----HH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-H----HH
Confidence 3478999999988888776554332 22345678999999999999999999999999887766644321 1 12
Q ss_pred HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC---------------CCCCEEEEEEeCCC
Q 006700 434 IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD---------------QSRDIVLVLATNRP 498 (635)
Q Consensus 434 l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~---------------~~~~viiI~ttN~~ 498 (635)
+..++. ....+.|+||||++.+.+ ...+.|...+..... ....+.+|.+++.+
T Consensus 93 l~~~~~---~~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~ 160 (334)
T 1in4_A 93 MAAILT---SLERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS 160 (334)
T ss_dssp HHHHHH---HCCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG
T ss_pred HHHHHH---HccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc
Confidence 223332 223467999999998742 233344333322110 11246788899999
Q ss_pred CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 499 GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 499 ~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
..+++++++||...+.|++|+.+++.+|++........ .++++.+..|+..+.|
T Consensus 161 ~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-------------------------~~~~~~~~~ia~~~~G- 214 (334)
T 1in4_A 161 GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-------------------------EIEDAAAEMIAKRSRG- 214 (334)
T ss_dssp GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------------------------CBCHHHHHHHHHTSTT-
T ss_pred ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CcCHHHHHHHHHhcCC-
Confidence 99999999999888999999999999999988764322 2788999999999988
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 579 SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 579 sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
++|.+..++..+...+...+...||.+++..+++...
T Consensus 215 ~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 7788888888776655555567899999999998753
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.76 E-value=1.5e-17 Score=165.33 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=138.3
Q ss_pred cccccCCccccCh---HHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCccc
Q 006700 352 EAIKNNGDIILHP---SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAP 425 (635)
Q Consensus 352 ~~~~~~~~vig~~---~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~ 425 (635)
.+...|+++++.+ .+...+..++. . ...+++||+||||||||++++.++..++ .+++.+++.++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAAS---G-----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHH---T-----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHh---C-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 3456889999743 44444443322 1 1346799999999999999999999874 6677777766543
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC---CC
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PG---DL 501 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-~~---~l 501 (635)
..... +. ....+.||||||++.+... ......|..++...... ..+.+|++||. +. .+
T Consensus 94 ~~~~~-------~~---~~~~~~vliiDe~~~~~~~-------~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 94 ISTAL-------LE---GLEQFDLICIDDVDAVAGH-------PLWEEAIFDLYNRVAEQ-KRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp SCGGG-------GT---TGGGSSEEEEETGGGGTTC-------HHHHHHHHHHHHHHHHH-CSCEEEEEESSCTTTTTCC
T ss_pred HHHHH-------HH---hccCCCEEEEeccccccCC-------HHHHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHHHHh
Confidence 22111 11 1133679999999987432 11233344444333211 22336666653 33 45
Q ss_pred cHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCC
Q 006700 502 DSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 502 ~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~s 579 (635)
.+.+.+||. .++.|++|+.+++..++..++..... .++++.+..|+..+.| +
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~g-~ 209 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-------------------------QLPEDVGRFLLNRMAR-D 209 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-------------------------CCCHHHHHHHHHHTTT-C
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHccC-C
Confidence 689999996 89999999999999999998875432 2789999999999877 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYARPDCVLDSQLFREVVE 612 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~ 612 (635)
.+++..++..+...+... ...||.+++..++.
T Consensus 210 ~r~l~~~l~~~~~~a~~~-~~~It~~~v~~~l~ 241 (242)
T 3bos_A 210 LRTLFDVLDRLDKASMVH-QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHhh
Confidence 777777776555544332 35699999998874
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1.9e-17 Score=172.51 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=147.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++...+.|...+.. +. ++++||+||||||||++|+.+++.+ +.+++.+++++...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-------~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 85 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-------GN-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG-- 85 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-------CC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS--
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-------CC-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC--
Confidence 345689999999999988776541 22 2349999999999999999999986 33466677665322
Q ss_pred hhHHHHHHHHHHHHh----h--cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006700 428 AQAVTKIHEIFDWAK----K--SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~----~--~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l 501 (635)
...+...+.... . ..++.||||||+|.+. ... .+.|+..++..+.++++|++||.+..+
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~---~~~L~~~le~~~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 86 ---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT---------AGA---QQALRRTMELYSNSTRFAFACNQSNKI 150 (323)
T ss_dssp ---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC---------HHH---HHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC---------HHH---HHHHHHHHhccCCCceEEEEeCChhhc
Confidence 223333333322 1 2237899999999873 222 344444455556788999999999999
Q ss_pred cHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHH
Q 006700 502 DSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581 (635)
Q Consensus 502 ~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgr 581 (635)
.+.+.+|+ ..+.|++|+.+++..++..++..... .++++.+..|+..+.|
T Consensus 151 ~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~l~~~~~G---- 200 (323)
T 1sxj_B 151 IEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDV-------------------------KYTNDGLEAIIFTAEG---- 200 (323)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHHHHHHHTT----
T ss_pred hhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----
Confidence 99999999 59999999999999999988865433 2788899999999877
Q ss_pred HHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 582 EIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 582 dI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+++.+++.++..+... ..+|.+++..++..
T Consensus 201 ~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 201 DMRQAINNLQSTVAGH--GLVNADNVFKIVDS 230 (323)
T ss_dssp CHHHHHHHHHHHHHHH--SSBCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhcC--CCcCHHHHHHHHCC
Confidence 5555555555554432 46888888877653
No 58
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=3e-18 Score=191.20 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=147.5
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhccc---------ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTK---------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~---------~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~ 423 (635)
.+..|++++|++...+.|...+....... .+..+++++||+||||||||++|+++|+.++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34578999999999999988776533211 111356789999999999999999999999999999999876
Q ss_pred ccch--hhHHH------HHHHHHHHH----hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEE
Q 006700 424 APLG--AQAVT------KIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVL 491 (635)
Q Consensus 424 ~~~~--~~~~~------~l~~~f~~a----~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vii 491 (635)
.... ..... .+..+|..+ .....++||||||+|.+.... +..+..|+..+......+++
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~~l~~L~~~l~~~~~~iIl 184 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RGGVGQLAQFCRKTSTPLIL 184 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TTHHHHHHHHHHHCSSCEEE
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HHHHHHHHHHHHhcCCCEEE
Confidence 5411 00000 011222221 122457899999999985421 11233333333323333444
Q ss_pred EEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHH
Q 006700 492 VLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEA 571 (635)
Q Consensus 492 I~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 571 (635)
|+++.....++ .+.+|+ ..+.|++|+.+++..++...+..... .++++++..|
T Consensus 185 i~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~-------------------------~i~~~~l~~l 237 (516)
T 1sxj_A 185 ICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKF-------------------------KLDPNVIDRL 237 (516)
T ss_dssp EESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CCCTTHHHHH
T ss_pred EEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHH
Confidence 43333333454 355555 79999999999999999887765433 2677889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 572 ARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 572 a~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
+..+.| |++.+++.++.++... ..||.+++..++..
T Consensus 238 a~~s~G----diR~~i~~L~~~~~~~--~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 238 IQTTRG----DIRQVINLLSTISTTT--KTINHENINEISKA 273 (516)
T ss_dssp HHHTTT----CHHHHHHHHTHHHHHS--SCCCTTHHHHHHHH
T ss_pred HHHcCC----cHHHHHHHHHHHHhcC--CCCchHHHHHHHHh
Confidence 999877 8888888888776643 56888888887764
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.76 E-value=3.6e-17 Score=174.14 Aligned_cols=209 Identities=21% Similarity=0.242 Sum_probs=148.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeee--ccCC---------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTGG--------- 421 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~--l~~~--------- 421 (635)
.+..|++++|++...+.|...+.. +..++.+||+||||||||++++.+++.+++.... ..|+
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 345789999999999988876643 2233468999999999999999999998653211 1111
Q ss_pred -----Ccccchh---hHHHHHHHHHHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEE
Q 006700 422 -----DVAPLGA---QAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIV 490 (635)
Q Consensus 422 -----~~~~~~~---~~~~~l~~~f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~vi 490 (635)
++..+.. .....+..++..+.. ...+.||||||+|.+. . ..++.|+..++..+.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------~---~~~~~Ll~~le~~~~~~~ 151 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------R---HSFNALLKTLEEPPEHVK 151 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------H---HHHHHHHHHHHSCCSSEE
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc---------H---HHHHHHHHHHhcCCCceE
Confidence 1111110 112234555555432 2346899999999873 2 245566666666778899
Q ss_pred EEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHH
Q 006700 491 LVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQE 570 (635)
Q Consensus 491 iI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 570 (635)
+|++||.+..+.+.+.+|+ ..+.|++|+.++...++..++..... .++++.+..
T Consensus 152 ~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~-------------------------~~~~~a~~~ 205 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI-------------------------AHEPRALQL 205 (373)
T ss_dssp EEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-------------------------CBCHHHHHH
T ss_pred EEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHH
Confidence 9999999999999999999 89999999999999999998876543 278889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHH
Q 006700 571 AARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVV 611 (635)
Q Consensus 571 la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l 611 (635)
|+..+.| +++.+..++..+ ..+. ...||.+++..++
T Consensus 206 l~~~~~G-~~r~~~~~l~~~--~~~~--~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 206 LARAAEG-SLRDALSLTDQA--IASG--DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHSSS-CHHHHHHHHHHH--HHHT--TTCBCHHHHHHHT
T ss_pred HHHHCCC-CHHHHHHHHHHH--HHhc--CCcccHHHHHHHh
Confidence 9999977 666666666533 2333 2468888877654
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=1.7e-17 Score=173.89 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=139.5
Q ss_pred ccccccCCccc-cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-
Q 006700 351 VEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP- 425 (635)
Q Consensus 351 ~~~~~~~~~vi-g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~- 425 (635)
..+..+|+++| |+... ..+..+....... ...+++++|+||||||||++++++++.+ +.+++.+++.++..
T Consensus 4 l~~~~~f~~fv~g~~~~-~a~~~~~~~~~~~---~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-LAYEVVKEALENL---GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-HHHHHHHHHHHTT---TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCCCCcccCCCCCcHH-HHHHHHHHHHhCc---CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 35667899998 53332 2222222222221 2235679999999999999999999998 88899888766432
Q ss_pred chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---CCc
Q 006700 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---DLD 502 (635)
Q Consensus 426 ~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---~l~ 502 (635)
+...........|.... ..++||||||++.+..+ ...+..+..++..... .+..+||.+++.+. .++
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~-------~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGK-------ERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTC-------HHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCC-------hHHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHhh
Confidence 11111111111222211 23679999999988532 1223333333333221 22344555555554 689
Q ss_pred HHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCH
Q 006700 503 SAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSG 580 (635)
Q Consensus 503 ~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sg 580 (635)
+.+.+||+ .++.|++ +.+++..|+..++..... .++++++..|+..+ | +.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-------------------------~l~~~~l~~l~~~~-g-~~ 201 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-------------------------ELRKEVIDYLLENT-K-NV 201 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-------------------------CCCHHHHHHHHHHC-S-SH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-------------------------CCCHHHHHHHHHhC-C-CH
Confidence 99999996 6789999 999999999999875432 38899999999998 6 55
Q ss_pred HHHHHHHHHHHHH---HH-cCCCCcc-CHHHHHHHHHHHHh
Q 006700 581 REIAKLMASVQAA---VY-ARPDCVL-DSQLFREVVEYKVE 616 (635)
Q Consensus 581 rdI~~L~~~~q~a---a~-~s~~~~l-t~~~i~~~l~~~~~ 616 (635)
|++..++..+... +. ......| |.+++.+++..+..
T Consensus 202 r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 202 REIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 6666655543332 00 0122457 88888888877653
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=3e-17 Score=175.48 Aligned_cols=220 Identities=16% Similarity=0.183 Sum_probs=154.9
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----------CCCeeeccCCCc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----------GLDYAMMTGGDV 423 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----------~~~~~~l~~~~~ 423 (635)
...++++|.+...+.+...+...... ..+++++|+||||||||++++.+++.+ +.+++.++|...
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 33488999999999998777654432 334589999999999999999999987 888888887653
Q ss_pred c-cc-------------------hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHH-HHHHHHHh
Q 006700 424 A-PL-------------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA-LNALLFRT 482 (635)
Q Consensus 424 ~-~~-------------------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~-L~~ll~~~ 482 (635)
. .. +......+..++.... .. +.||||||+|.+..... ... +..++...
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~ 162 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NI-RAIIYLDEVDTLVKRRG--------GDIVLYQLLRSD 162 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SS-CEEEEEETTHHHHHSTT--------SHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cC-CCEEEEECHHHhccCCC--------CceeHHHHhcCC
Confidence 3 10 0001122333333332 22 33999999999853211 233 44444332
Q ss_pred CCCCCCEEEEEEeCCC---CCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhh
Q 006700 483 GDQSRDIVLVLATNRP---GDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559 (635)
Q Consensus 483 ~~~~~~viiI~ttN~~---~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (635)
.+++||+|||.+ ..+++.+.+||+..+.|++|+.+++..|+..++.....
T Consensus 163 ----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~----------------------- 215 (384)
T 2qby_B 163 ----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI----------------------- 215 (384)
T ss_dssp ----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC-----------------------
T ss_pred ----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc-----------------------
Confidence 789999999977 67899999999889999999999999999998864211
Q ss_pred ccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-CCCccCHHHHHHHHHHHHh
Q 006700 560 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR-PDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 560 ~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s-~~~~lt~~~i~~~l~~~~~ 616 (635)
-..++++.+..++..+.+.+| +++.+++.++.++... +...||.+++..++.....
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc
Confidence 012778889999988873222 6666666666555443 3468999999999887654
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.75 E-value=1.1e-17 Score=174.15 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=141.7
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccch--hhHH-
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG--AQAV- 431 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~--~~~~- 431 (635)
+++||.+.....+...+...... ..++||+||||||||++|++|+..+ +.+|+.++|+.+.... ....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhCC------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 46899998888888777765432 2359999999999999999999976 5789999998765310 0000
Q ss_pred ----------HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEE
Q 006700 432 ----------TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVL 493 (635)
Q Consensus 432 ----------~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ 493 (635)
......|..+. +++||||||+.+ +...+..|..+++... ....++.||+
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDI---------SPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHT----TSEEEEESCTTC---------CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred ccccccCchhhhhcCHHHhcC----CCEEEEeccccC---------CHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 01122333332 579999999987 3445555555554422 1235689999
Q ss_pred EeCCC-------CCCcHHHHcccc-ceEecCCCC--HHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCC
Q 006700 494 ATNRP-------GDLDSAITDRID-EVIEFPLPR--EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDL 563 (635)
Q Consensus 494 ttN~~-------~~l~~~l~~R~d-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (635)
|||.. ..+++.+.+||. ..|.+|++. .++...|+.+++..+.. ..+.....+
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~------------------~~~~~~~~~ 204 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAE------------------RNRKVVKGF 204 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHH------------------HTTCCCCCB
T ss_pred ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHH------------------HhccCccCC
Confidence 99975 357889999994 234455544 34556688887766532 111112248
Q ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 006700 564 SDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFR 608 (635)
Q Consensus 564 ~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~ 608 (635)
+++++..|..+ .|+| +++.|.+.++.++..+.+..|+.+++.
T Consensus 205 s~~a~~~L~~~--~wpG-nvReL~~~l~~~~~~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 205 TPQAMDLLIHY--DWPG-NIRELENAIERAVVLLTGEYISERELP 246 (304)
T ss_dssp CHHHHHHHHHC--CCSS-HHHHHHHHHHHHHHHCCSSSBCGGGSC
T ss_pred CHHHHHHHHcC--CCCC-CHHHHHHHHHHHHHhCCCCcccHHhhh
Confidence 99999999976 3444 888888888888777666777776664
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=3e-16 Score=167.73 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=156.0
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCcccc--
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPL-- 426 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~~-- 426 (635)
+...+++++|.+...+.+...+........ ..+++++|+||||||||++++.++..+ +..++.++|......
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~--~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCC--CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 334458899999999998887765443221 112379999999999999999999998 567888887654320
Q ss_pred ----------------hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCC----
Q 006700 427 ----------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS---- 486 (635)
Q Consensus 427 ----------------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~---- 486 (635)
+......+..+.........+.||||||++.+ +. ..+..|+..+....
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~~---~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------AP---DILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------CH---HHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------ch---HHHHHHHHHHHhCCCCCc
Confidence 00111122223333333455789999999987 12 34455555544322
Q ss_pred CCEEEEEEeCCC---CCCcHHHHccccc-eEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 487 RDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 487 ~~viiI~ttN~~---~~l~~~l~~R~d~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
.++.||++||.+ ..+++.+.+||.. .+.|++++.++...++...+..... . ..
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~------------------~-----~~ 214 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA------------------E-----GS 214 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC------------------T-----TS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC------------------C-----CC
Confidence 588999999987 6789999999975 8999999999999999998865321 0 12
Q ss_pred CCHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 563 LSDNVIQEAARKT---------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 563 ~~~~~l~~la~~t---------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
++++.+..++..+ .| +++.+..++..+...+...+...++.+++..++....
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 215 YSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 7899999999998 44 4555556655544445455667899999998887654
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=6.1e-17 Score=176.99 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=146.6
Q ss_pred cccccccCCccc-cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCc
Q 006700 350 PVEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDV 423 (635)
Q Consensus 350 ~~~~~~~~~~vi-g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~ 423 (635)
...+..+|+++| |+.... .+..+....... +. +++++||||||||||++++++++.+ +.+++.+++..+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~---~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKHP---GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH-HHHHHHHHHHST---TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCCCCChhhcCCCCchHH-HHHHHHHHHhCC---CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 356677899988 644433 333222222221 12 5679999999999999999999988 777888877654
Q ss_pred cc-chhhHHHHHHHHHHHHhhcC-CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCC
Q 006700 424 AP-LGAQAVTKIHEIFDWAKKSK-KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR-PGD 500 (635)
Q Consensus 424 ~~-~~~~~~~~l~~~f~~a~~~~-~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~-~~~ 500 (635)
.. +...........|.. ... .+.||||||++.+..+ ...+..|..++..+.. .+. .||+||+. +..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~vL~IDEi~~l~~~-------~~~q~~l~~~l~~l~~-~~~-~iIitt~~~~~~ 240 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFRE--KYRKKVDILLIDDVQFLIGK-------TGVQTELFHTFNELHD-SGK-QIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHTTCHHHHHH--HHTTTCSEEEEECGGGGSSC-------HHHHHHHHHHHHHHHT-TTC-EEEEEESSCGGG
T ss_pred HHHHHHHHHcccHHHHHH--HhcCCCCEEEEeCcccccCC-------hHHHHHHHHHHHHHHH-CCC-eEEEEECCCHHH
Confidence 22 110000000111211 122 4789999999988532 1223333333333222 223 45555554 443
Q ss_pred ---CcHHHHcccc--ceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006700 501 ---LDSAITDRID--EVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT 575 (635)
Q Consensus 501 ---l~~~l~~R~d--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 575 (635)
+++.+++||. .++.|++|+.+++..|+..++..... .++++++..|+..+
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-------------------------~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-------------------------ELPEEVLNFVAENV 295 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-------------------------CCCTTHHHHHHHHC
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHhc
Confidence 8899999996 78999999999999999998865432 26788899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Q 006700 576 EGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 576 ~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~ 615 (635)
.| ++|++..++..+...+...+ ..||.+++.+++....
T Consensus 296 ~g-n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 296 DD-NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred CC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 77 88888888877666665433 4699999999998765
No 65
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.73 E-value=6.2e-17 Score=175.19 Aligned_cols=241 Identities=18% Similarity=0.303 Sum_probs=154.8
Q ss_pred CccccChHHHHHHHHHHHHH-hccc-----ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCccc---chh
Q 006700 358 GDIILHPSLQRRIQHLAKAT-ANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 428 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~-~~~~-----~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~---~~~ 428 (635)
..|+|++++++.|...+... .... ....+++++||+||||||||++|++||..++.+|+.++++.+.. ++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 57899999999997766432 1111 11235679999999999999999999999999999998866543 222
Q ss_pred hHHHHHHHHHHHHh------------------------------------------------------------------
Q 006700 429 QAVTKIHEIFDWAK------------------------------------------------------------------ 442 (635)
Q Consensus 429 ~~~~~l~~~f~~a~------------------------------------------------------------------ 442 (635)
+....+..+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 22333333332220
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 006700 443 ------------------------------------------------------------------------KSKKGLLL 450 (635)
Q Consensus 443 ------------------------------------------------------------------------~~~~~~vL 450 (635)
+..+.+||
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 00124589
Q ss_pred EecCchhhhhhcccccCcHHHHHHHHHHHHHhCC----------CCCCEEEEEEe----CCCCCCcHHHHccccceEecC
Q 006700 451 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGD----------QSRDIVLVLAT----NRPGDLDSAITDRIDEVIEFP 516 (635)
Q Consensus 451 ~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~----------~~~~viiI~tt----N~~~~l~~~l~~R~d~~i~~~ 516 (635)
|+||||.+....++.+-+.....+...||..++. +..+++||+|. +.+.++.|+|++||+.+|.|+
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 9999999986543222122222344555555542 45688999987 234446689999999899999
Q ss_pred CCCHHHHHHHHH----HHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHH-------cCCCCHHHHHH
Q 006700 517 LPREEERFKLLK----LYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARK-------TEGFSGREIAK 585 (635)
Q Consensus 517 ~p~~~er~~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~-------t~G~sgrdI~~ 585 (635)
.++.++..+|+. ..+.++.. ++......+. ++++++..|+.. |.....|.|+.
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~-------------~~~~~~~~l~---~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKA-------------LMATEGVNIA---FTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHH-------------HHHTTTCEEE---ECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHH-------------HhcccCceEE---ECHHHHHHHHHHHHHhccCCccCCchHHHH
Confidence 999999999984 22222211 2211122222 899999999974 46677788888
Q ss_pred HHHHHHH-HHHcC-----CCCccCHHHHHHHHHHH
Q 006700 586 LMASVQA-AVYAR-----PDCVLDSQLFREVVEYK 614 (635)
Q Consensus 586 L~~~~q~-aa~~s-----~~~~lt~~~i~~~l~~~ 614 (635)
++..+.. .++.- ....||.+.+...+...
T Consensus 399 ~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 399 VMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 8764433 33321 12468998888766543
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.8e-17 Score=168.64 Aligned_cols=216 Identities=12% Similarity=0.160 Sum_probs=140.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcccc-----------------hhhHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPL-----------------GAQAVTKIHEI 437 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~~~-----------------~~~~~~~l~~~ 437 (635)
..+.++||+||||||||++++.+++.+ +..++.++|..+... .+.....+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 455789999999999999999999998 346788888765321 11233456667
Q ss_pred HHHH-hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC----cHHHHcccc-c
Q 006700 438 FDWA-KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL----DSAITDRID-E 511 (635)
Q Consensus 438 f~~a-~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l----~~~l~~R~d-~ 511 (635)
|... .....+.||||||+|.|. .+.+|..++........+++||+++|..+.. ++.+.+||. .
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-----------~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~ 191 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-----------SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFT 191 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-----------CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEE
T ss_pred HHHhhhccCCceEEEEecHHHhh-----------cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCce
Confidence 7654 233457899999999985 2457777776655566789999999987654 445577986 6
Q ss_pred eEecCCCCHHHHHHHHHHHHHhhcCCC-----CCCCCccchhhhhhhhhh-------hhhccCCCHHHHHHHHHHcCCCC
Q 006700 512 VIEFPLPREEERFKLLKLYLKKYLCSD-----EGDSSSLKWGHLFKKQQQ-------KITIKDLSDNVIQEAARKTEGFS 579 (635)
Q Consensus 512 ~i~~~~p~~~er~~Il~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~la~~t~G~s 579 (635)
.|.|++|+.++...|++..+..... . ....+...+...-..... ++. ..++++++..+|++...-
T Consensus 192 ~i~F~pYt~~el~~Il~~Rl~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~ai~~~A~~vA~~- 268 (318)
T 3te6_A 192 EIKLNKVDKNELQQMIITRLKSLLK-PFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVIN-HKINNKITQLIAKNVANV- 268 (318)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHCC-CEEEEECTTCCEEECCCC--------CTTEEEEC-EECCHHHHHHHHHHHHHH-
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccccc-cccCHHHHHHHHHHHHhh-
Confidence 8999999999999999999987532 0 000000000000000000 000 127999999999853221
Q ss_pred HHHHHHHHHHHHHHHHcC------------CCCccCHHHHHHHHHHH
Q 006700 580 GREIAKLMASVQAAVYAR------------PDCVLDSQLFREVVEYK 614 (635)
Q Consensus 580 grdI~~L~~~~q~aa~~s------------~~~~lt~~~i~~~l~~~ 614 (635)
.+|+++.++.++.++... +..+||.+++.+++...
T Consensus 269 ~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 269 SGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 229999998888776432 12356666666665554
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.4e-16 Score=167.80 Aligned_cols=229 Identities=19% Similarity=0.194 Sum_probs=157.4
Q ss_pred cccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh------CCCeeeccCCCccc
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAP 425 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l------~~~~~~l~~~~~~~ 425 (635)
.+...+++++|.+...+.|...+..... ...+.+++|+||||||||++++.++..+ +.+++.++|.....
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYR----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGG----TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3444558899999988888765543211 2344579999999999999999999988 77888887653221
Q ss_pred ------------------chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCC-CC
Q 006700 426 ------------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD-QS 486 (635)
Q Consensus 426 ------------------~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~-~~ 486 (635)
.+......+..++........+.||||||++.+....+ ...+..++..++. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVNK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcCC
Confidence 01011222344444444445578999999999864321 2245555544432 35
Q ss_pred CCEEEEEEeCCC---CCCcHHHHccccc-eEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 487 RDIVLVLATNRP---GDLDSAITDRIDE-VIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 487 ~~viiI~ttN~~---~~l~~~l~~R~d~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
.++.+|++||.+ ..+++.+.+||.. .+.|++|+.++...|+..++..... ...
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-----------------------~~~ 218 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-----------------------PGV 218 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-----------------------SSC
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-----------------------CCC
Confidence 578999999876 4678899999864 8999999999999999988764321 013
Q ss_pred CCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 563 LSDNVIQEAARKTE---GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 563 ~~~~~l~~la~~t~---G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
++++.+..++..+. | +++.+..++..+-..+...+...||.+++..++.....
T Consensus 219 ~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 219 LPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp SCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 78888999998876 6 55666666665544444445678999999998877654
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=8.6e-17 Score=169.88 Aligned_cols=205 Identities=19% Similarity=0.213 Sum_probs=144.3
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC-----CeeeccCCCcccch
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLG 427 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~-----~~~~l~~~~~~~~~ 427 (635)
.+..|++++|++.+.+.|...+.. +. +.++||+||||||||++++++++.+.. .+..+++++...
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-------g~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-- 89 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-------GK-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG-- 89 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-------TC-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS--
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-------CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc--
Confidence 455789999999988888765542 22 235999999999999999999998743 245555544211
Q ss_pred hhHHHHHHHHHHHHhh-----cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCc
Q 006700 428 AQAVTKIHEIFDWAKK-----SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD 502 (635)
Q Consensus 428 ~~~~~~l~~~f~~a~~-----~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~ 502 (635)
. ..+...+..... ...+.|++|||+|.+. ...+ +.|+..++..+.++++|++||.+..+.
T Consensus 90 ~---~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~~---~~L~~~le~~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 90 I---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------NAAQ---NALRRVIERYTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp H---HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------HHHH---HHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred H---HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------HHHH---HHHHHHHhcCCCCeEEEEEecCccccc
Confidence 1 222222222111 1236899999999873 3333 444444555667889999999999999
Q ss_pred HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHH
Q 006700 503 SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGRE 582 (635)
Q Consensus 503 ~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrd 582 (635)
+.+.+|| ..+.|++++.++...++...+..... .++++.+..++..+.| +
T Consensus 155 ~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~-------------------------~i~~~~~~~i~~~s~G----~ 204 (340)
T 1sxj_C 155 PALLSQC-TRFRFQPLPQEAIERRIANVLVHEKL-------------------------KLSPNAEKALIELSNG----D 204 (340)
T ss_dssp HHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTC-------------------------CBCHHHHHHHHHHHTT----C
T ss_pred hhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCC-------------------------CCCHHHHHHHHHHcCC----C
Confidence 9999999 68999999999999988888754322 2788899999988877 7
Q ss_pred HHHHHHHHHHHHHcCC---CCccCHHHHHHHHH
Q 006700 583 IAKLMASVQAAVYARP---DCVLDSQLFREVVE 612 (635)
Q Consensus 583 I~~L~~~~q~aa~~s~---~~~lt~~~i~~~l~ 612 (635)
++.+++.++.++.... ...||.+++..++.
T Consensus 205 ~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 205 MRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 7777777766654432 12688888776654
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=1.3e-17 Score=159.24 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=112.9
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
...|++++|.+...+.+...+.. ...+++||+||||||||++++.+++.+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 45689999999877777655331 234579999999999999999999986 567777766554
Q ss_pred c---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006700 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 499 (635)
Q Consensus 424 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~- 499 (635)
. ...+.....+..++........++||||||+|.+........ .......+..++ ...++.+|++||.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~-----~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLDEY 163 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHH-----HTTSCCEEEEECHHHH
T ss_pred hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhh-----ccCCeEEEEeCCHHHH
Confidence 2 233445556677777665566688999999999875432211 112233444444 234678899998765
Q ss_pred ----CCcHHHHccccceEecCCCCHHHHHHHH
Q 006700 500 ----DLDSAITDRIDEVIEFPLPREEERFKLL 527 (635)
Q Consensus 500 ----~l~~~l~~R~d~~i~~~~p~~~er~~Il 527 (635)
.+++.+.+||+ .+.|++|+.+++.+|+
T Consensus 164 ~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 78999999996 7999999999998775
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=1.3e-16 Score=186.31 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=157.7
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCcc
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~~ 424 (635)
..|+.+||.+.....+..++. .....++||+||||||||++|+.|+..+ +..++.++++.+.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~--------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~ 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC--------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred CCCCCccCCHHHHHHHHHHHh--------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence 478999999988888766543 1234579999999999999999999987 4455666555443
Q ss_pred ---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006700 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 499 (635)
Q Consensus 425 ---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~-- 499 (635)
.+.+.....+..+|..+... .++||||||+|.+.+........ ....+.|...+ ...++.+|++||.++
T Consensus 255 ~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~---~~~~~~L~~~l--~~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 255 AGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLL--SSGKIRVIGSTTYQEFS 328 (758)
T ss_dssp CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCH---HHHHHHHSSCS--SSCCCEEEEEECHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcch---HHHHHHHHHHH--hCCCeEEEEEeCchHHh
Confidence 23445666788888877654 46999999999998655432212 22333333222 245688999998643
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
.+++++.+||+ .+.|+.|+.+++..||..++..+.. ...+ .++++++..++..+.
T Consensus 329 ~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~------------------~~~v---~~~~~al~~~~~~s~ 386 (758)
T 1r6b_X 329 NIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA------------------HHDV---RYTAKAVRAAVELAV 386 (758)
T ss_dssp CCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH------------------HHTC---CCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH------------------hcCC---CCCHHHHHHHHHHhh
Confidence 57889999995 7999999999999999988776532 1112 278888888887765
Q ss_pred C-----CCHHHHHHHHHHHHHHHHc----CCCCccCHHHHHHHHHHHH
Q 006700 577 G-----FSGREIAKLMASVQAAVYA----RPDCVLDSQLFREVVEYKV 615 (635)
Q Consensus 577 G-----~sgrdI~~L~~~~q~aa~~----s~~~~lt~~~i~~~l~~~~ 615 (635)
| +.+..+..+++.+...+.. .....++.++|..++....
T Consensus 387 ~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 387 KYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 4 4555677777655544433 2346799999999988764
No 71
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=3.6e-16 Score=165.47 Aligned_cols=192 Identities=17% Similarity=0.267 Sum_probs=130.2
Q ss_pred ccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC------------------
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD------------------ 414 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~------------------ 414 (635)
.+..|++++|++.+.+.+...+. ..+.. .+++|+||||||||+++++++..+..+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~------~~~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD------QPRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT------CTTCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh------hCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 45678999999999888765431 11222 349999999999999999999965211
Q ss_pred -----------eeeccCCCcccchhhHHHHHHHHHHHHhh-------------cCCcEEEEecCchhhhhhcccccCcHH
Q 006700 415 -----------YAMMTGGDVAPLGAQAVTKIHEIFDWAKK-------------SKKGLLLFIDEADAFLCERNSIHMSEA 470 (635)
Q Consensus 415 -----------~~~l~~~~~~~~~~~~~~~l~~~f~~a~~-------------~~~~~vL~iDEid~l~~~r~~~~~~~~ 470 (635)
++.+++.+. +......+...+..+.. ..++.||||||++.+ +..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------~~~ 149 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDM---GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------TKD 149 (354)
T ss_dssp ----CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---------CHH
T ss_pred cceeeeecccceEEecHhhc---CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---------CHH
Confidence 112222111 11010123333333221 224679999999985 333
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhh
Q 006700 471 QRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHL 550 (635)
Q Consensus 471 ~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~ 550 (635)
.+..|..++. ....++.||++||.+..+.+.+.+|| ..+.|++|+.+++..++...+.....
T Consensus 150 ~~~~L~~~le---~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~-------------- 211 (354)
T 1sxj_E 150 AQAALRRTME---KYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI-------------- 211 (354)
T ss_dssp HHHHHHHHHH---HSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHH---hhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC--------------
Confidence 3444444443 34557899999999999999999999 89999999999999999988865433
Q ss_pred hhhhhhhhhccCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q 006700 551 FKKQQQKITIKDLS-DNVIQEAARKTEGFSGREIAKLMASVQAAVYA 596 (635)
Q Consensus 551 ~~~~~~~~~~~~~~-~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~ 596 (635)
.++ ++++..|+..+.| +++.+++.++.++..
T Consensus 212 -----------~~~~~~~l~~i~~~~~G----~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 212 -----------QLETKDILKRIAQASNG----NLRVSLLMLESMALN 243 (354)
T ss_dssp -----------EECCSHHHHHHHHHHTT----CHHHHHHHHTHHHHT
T ss_pred -----------CCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHh
Confidence 267 7899999999877 666666666666554
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=2.2e-16 Score=173.91 Aligned_cols=188 Identities=18% Similarity=0.305 Sum_probs=128.2
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
...|+.|||++...+.+..++.. ...+|+||+||||||||++|++||..+ +.+++.++++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 34688999999999888766542 233579999999999999999999997 6778888776
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----
Q 006700 424 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 499 (635)
Q Consensus 424 ~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---- 499 (635)
..+.+.....+..+|..+.... ++||||| . +. ...+.|+..+. .+++.||++||.++
T Consensus 246 ~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD--~-----------~~---~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 TKYRGEFEDRLKKVMDEIRQAG-NIILFID--A-----------AI---DASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp -------CTTHHHHHHHHHTCC-CCEEEEC--C----------------------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred ccccchHHHHHHHHHHHHHhcC-CeEEEEe--C-----------ch---hHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 3344444556778888877654 7899999 1 11 12333333332 45789999999887
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGF 578 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~ 578 (635)
.+++++.+||. .|.|++|+.+++..|++.++..+.. ...+ .++++++..++..+.+|
T Consensus 307 ~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~------------------~~~~---~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 307 IEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA------------------HHRV---SITDDAIEAAVKLSDRY 364 (468)
T ss_dssp HTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG------------------GSSC---SCCHHHHHHHHHHHHHS
T ss_pred hhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH------------------hcCC---CCCHHHHHHHHHHHHHH
Confidence 68999999995 7999999999999999988766532 1122 27888888888776554
Q ss_pred C-----HHHHHHHHHHHHH
Q 006700 579 S-----GREIAKLMASVQA 592 (635)
Q Consensus 579 s-----grdI~~L~~~~q~ 592 (635)
. ++....++..+.+
T Consensus 365 ~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHHH
Confidence 3 3355566554433
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=6.7e-16 Score=182.24 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=134.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
...|+.+||.+.....+..++. ....+++||+||||||||++++.+|..+ +.+++.++++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~--------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL--------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH--------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred cCCCcccCCcHHHHHHHHHHHh--------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 4578999999988877766543 1233579999999999999999999987 778888888776
Q ss_pred c---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006700 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 499 (635)
Q Consensus 424 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~- 499 (635)
. .+.++....+..+|..+.....++||||||+|.+.+.....+ .......|..++ . ..++.+|++||.++
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~~~~~~L~~~l---~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPAL---A--RGELRLIGATTLDEY 311 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH---H--TTCCCEEEEECHHHH
T ss_pred hccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hHHHHHHHHHHH---h--CCCeEEEEecCchHH
Confidence 3 244566677888888887665679999999999976543321 122233344444 2 35677999998664
Q ss_pred ---CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006700 500 ---DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE 576 (635)
Q Consensus 500 ---~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 576 (635)
.+++++.+||+ .|.|++|+.+++..|++.++..+.. ...+ .++++++..++..+.
T Consensus 312 ~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~------------------~~~~---~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 312 REIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV------------------HHGV---RISDSAIIAAATLSH 369 (854)
T ss_dssp HHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH------------------HTTC---EECHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh------------------hcCC---CCCHHHHHHHHHHHh
Confidence 47899999996 5999999999999999988876532 1112 267778887777553
Q ss_pred -----CCCHHHHHHHHHHHHHHHH
Q 006700 577 -----GFSGREIAKLMASVQAAVY 595 (635)
Q Consensus 577 -----G~sgrdI~~L~~~~q~aa~ 595 (635)
+|.+.....++..+.+.+.
T Consensus 370 r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 370 RYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred hhcccccChHHHHHHHHHHHHHHH
Confidence 4556566666654444433
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=4e-16 Score=148.52 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=104.6
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
...|++++|.+.....+...+.. ...+++||+||||||||++++.+++.+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL 89 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh
Confidence 34689999999877776654421 234579999999999999999999987 556666655443
Q ss_pred c---cchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006700 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG- 499 (635)
Q Consensus 424 ~---~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~- 499 (635)
. ...+.....+..++..+.....+.||||||+|.+.+.+............|..++ . ..+++||+++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~---~--~~~~~ii~~~~~~~~ 164 (187)
T 2p65_A 90 IAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML---A--RGELRCIGATTVSEY 164 (187)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHH---H--TTCSCEEEEECHHHH
T ss_pred hcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHH---h--cCCeeEEEecCHHHH
Confidence 2 1233444556667776666656789999999999754331111112233343333 2 35678999999765
Q ss_pred ----CCcHHHHccccceEecCCCC
Q 006700 500 ----DLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 500 ----~l~~~l~~R~d~~i~~~~p~ 519 (635)
.+++.+.+||+ .+.+++|+
T Consensus 165 ~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 165 RQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHhccHHHHHhcC-cccCCCCC
Confidence 68999999996 69999886
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.64 E-value=1.3e-15 Score=168.11 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=138.1
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCcc--cchh-hHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVA--PLGA-QAVT 432 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~--~~~~-~~~~ 432 (635)
..++|++.+++.+...+.. ..++||+||||||||++|++||..++. +|..+.+.... .+.+ ....
T Consensus 22 ~~ivGq~~~i~~l~~al~~----------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH----------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhc----------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHH
Confidence 6689999998877654432 136999999999999999999998843 44444443211 1111 0000
Q ss_pred H--HHHHHHHHhhc--CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCC-
Q 006700 433 K--IHEIFDWAKKS--KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--------DQSRDIVLVLATNRPG- 499 (635)
Q Consensus 433 ~--l~~~f~~a~~~--~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--------~~~~~viiI~ttN~~~- 499 (635)
. -.+.|..+... ..++|||||||+.+ +...+..|..++..-. ..+.. ++|+|||...
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~lpe 161 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNELPE 161 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESSCCC
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccccCCC
Confidence 0 01122111111 02569999999876 3455555555554210 11223 4678888533
Q ss_pred --CCcHHHHccccceEecCCCCH-HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHc-
Q 006700 500 --DLDSAITDRIDEVIEFPLPRE-EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKT- 575 (635)
Q Consensus 500 --~l~~~l~~R~d~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t- 575 (635)
.+.+++++||...+.+++|+. +++..|+......... ............+..- ...+.-..++++.++.++...
T Consensus 162 ~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~-~~~~~~~~~~e~l~~~-~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN-PVPDALQVTDEEYERW-QKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSC-CSCTTTSBCHHHHHHH-HHHHTTCBCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCC-CCCccceecHHHHHHH-HhcCCcccCchHHHHHHHHHHH
Confidence 356799999988899999997 6788888765432211 0000000111111111 111111238888888887665
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHH
Q 006700 576 --------EGFSGREIAKLMASVQAAVYARPDCVLDSQLFR 608 (635)
Q Consensus 576 --------~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~ 608 (635)
.|.|+|.+..++..+++.|...+...++.+|+.
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 588999999999999999998888888888877
No 76
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.63 E-value=1.6e-16 Score=170.97 Aligned_cols=212 Identities=20% Similarity=0.288 Sum_probs=150.3
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCcccc--hhhHH
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPL--GAQAV 431 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~~~~--~~~~~ 431 (635)
+..++|.+...+.+...+..+..... ++||+|++|||||++|++++..++ .+|+.++|+.+..- ..+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~------~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAEC------PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCS------CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCC------CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 56789988888888777776554433 489999999999999999998874 68999999886541 11111
Q ss_pred HH-----------HHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh-----CC---CCCCEEEE
Q 006700 432 TK-----------IHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT-----GD---QSRDIVLV 492 (635)
Q Consensus 432 ~~-----------l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~-----~~---~~~~viiI 492 (635)
+. ..+.|..+ .+++||||||+.+ +...+..|..+|+.- +. ...++.||
T Consensus 210 g~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 210 GYEKGAFTGAVSSKEGFFELA----DGGTLFLDEIGEL---------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp CBCTTSSTTCCSCBCCHHHHT----TTSEEEEESGGGC---------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred CCCCCCCCCcccccCCceeeC----CCcEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 11 11233333 2679999999987 567777777777752 11 23478999
Q ss_pred EEeCCC-------CCCcHHHHccccceEecCCCCH----HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhcc
Q 006700 493 LATNRP-------GDLDSAITDRIDEVIEFPLPRE----EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 561 (635)
Q Consensus 493 ~ttN~~-------~~l~~~l~~R~d~~i~~~~p~~----~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (635)
+|||.. ..+.+.+..|+ .++.+..|+. +++..|+.+|+.++.. ..+..+.
T Consensus 277 ~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~ 337 (387)
T 1ny5_A 277 AATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSR------------------KYAKEVE 337 (387)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHH------------------HTTCCCC
T ss_pred EeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHH------------------HcCCCCC
Confidence 999963 56888888888 4445555555 4555577888776543 1112223
Q ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHH
Q 006700 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFRE 609 (635)
Q Consensus 562 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~ 609 (635)
.++++++..|..+ .|+| +++.|-+.++.++..+.+..|+.+++..
T Consensus 338 ~~~~~a~~~l~~~--~wpG-NvreL~~~i~~~~~~~~~~~i~~~~l~~ 382 (387)
T 1ny5_A 338 GFTKSAQELLLSY--PWYG-NVRELKNVIERAVLFSEGKFIDRGELSC 382 (387)
T ss_dssp EECHHHHHHHHHS--CCTT-HHHHHHHHHHHHHHHCCSSEECHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCc-HHHHHHHHHHHHHHhCCCCcCcHHHCcH
Confidence 4899999999965 6776 9999999999998887778899888754
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.63 E-value=3.1e-15 Score=157.66 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=114.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCeeec--cC--------------CCcccch------hhHHHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM--TG--------------GDVAPLG------AQAVTKIHEIFDWAK 442 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l--~~--------------~~~~~~~------~~~~~~l~~~f~~a~ 442 (635)
..++.+||+||||||||++|+.+|+.+.+....- .| .++..+. ......++.++..+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 3445699999999999999999999986532110 00 1111111 112344566666654
Q ss_pred hc---CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCC
Q 006700 443 KS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPR 519 (635)
Q Consensus 443 ~~---~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~ 519 (635)
.. ..+.|+||||+|.|. ....+.|+..+++++.++++|++||.++.+.+.+++|+ ..+.|++|+
T Consensus 102 ~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~ 168 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLAPPP 168 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCC
T ss_pred hccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCC
Confidence 32 357899999999873 23567788888888889999999999999999999999 789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHH
Q 006700 520 EEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586 (635)
Q Consensus 520 ~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L 586 (635)
.++...++...+ . ++++++..++..+.| +++.+..+
T Consensus 169 ~~~~~~~L~~~~----~--------------------------~~~~~~~~l~~~s~G-~~r~a~~~ 204 (334)
T 1a5t_A 169 EQYAVTWLSREV----T--------------------------MSQDALLAALRLSAG-SPGAALAL 204 (334)
T ss_dssp HHHHHHHHHHHC----C--------------------------CCHHHHHHHHHHTTT-CHHHHHHT
T ss_pred HHHHHHHHHHhc----C--------------------------CCHHHHHHHHHHcCC-CHHHHHHH
Confidence 999888877653 2 677888888888877 44444443
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=3.1e-16 Score=177.33 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=149.9
Q ss_pred CccccChHHHHHHHHHHHHHhccc------ccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec----cCCCccc-c
Q 006700 358 GDIILHPSLQRRIQHLAKATANTK------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM----TGGDVAP-L 426 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~------~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l----~~~~~~~-~ 426 (635)
..++|++.++..+...+ ..+. .......++||+||||||||++|+++|..++..++.. ++..+.. .
T Consensus 295 ~~I~G~e~vk~al~~~l---~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALAL---FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTT---TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHH---hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 56889998887763221 1110 0011223799999999999999999999987665442 2222221 1
Q ss_pred hhhH-HH---HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC----------CCCCCEEEE
Q 006700 427 GAQA-VT---KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG----------DQSRDIVLV 492 (635)
Q Consensus 427 ~~~~-~~---~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~----------~~~~~viiI 492 (635)
.... .+ ...+.+..+ .++||||||+|.+. ...+..|..++..-. ..+.++.||
T Consensus 372 ~~~~~~g~~~~~~G~l~~A----~~gil~IDEid~l~---------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA----DGGIAVIDEIDKMR---------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH----SSSEECCTTTTCCC---------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eeccccccccccCCeeEec----CCCcEEeehhhhCC---------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 0000 00 001122222 26799999999873 344555555554311 123578899
Q ss_pred EEeCCCC-------------CCcHHHHccccce-EecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccc-hhhhhhhhhhh
Q 006700 493 LATNRPG-------------DLDSAITDRIDEV-IEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLK-WGHLFKKQQQK 557 (635)
Q Consensus 493 ~ttN~~~-------------~l~~~l~~R~d~~-i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (635)
+|||... .+++++++|||.. +..+.|+.+ ...|+.+.+..+............ +..++......
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHh
Confidence 9999876 8999999999855 455666666 778888887765421000000011 11121111111
Q ss_pred hhccCCCHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHh
Q 006700 558 ITIKDLSDNVIQEAARK--------------TEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 558 ~~~~~~~~~~l~~la~~--------------t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+. ..+++++.+.|... ..+.|+|.+..++..+++.|.......++.+|+.+++.-+..
T Consensus 518 ~~-p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 518 VT-PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HC-CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 11 13677777777766 347899999999999999999888899999999999987654
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=7.2e-15 Score=171.40 Aligned_cols=190 Identities=18% Similarity=0.294 Sum_probs=131.4
Q ss_pred cccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----------CCCeeeccCCCc
Q 006700 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----------~~~~~~l~~~~~ 423 (635)
...|+.+||.+...+.+..++.. ...+|+||+||||||||++|++||..+ +.+++.+++ .
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g 245 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--G 245 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred hCCCCCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--c
Confidence 34678999999999988776542 234579999999999999999999997 677777766 2
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----
Q 006700 424 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG---- 499 (635)
Q Consensus 424 ~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~---- 499 (635)
..+.++....+..+|..+... .++||||| . +. ...+.|+..+. .+.+++|++||..+
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~~-~~~iLfiD--~-----------~~---~~~~~L~~~l~--~~~v~~I~at~~~~~~~~ 306 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQA-GNIILFID--A-----------AI---DASNILKPSLA--RGELQCIGATTLDEYRKY 306 (758)
T ss_dssp -------CTTHHHHHHHHHTC-CCCEEEEC--C----------------------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred ccccchHHHHHHHHHHHHHhc-CCEEEEEc--C-----------ch---hHHHHHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 223445556788888888764 47899999 1 11 12333333333 56789999999888
Q ss_pred -CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcC--
Q 006700 500 -DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTE-- 576 (635)
Q Consensus 500 -~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~-- 576 (635)
.+++++.+|| ..|.|+.|+.+++..||+.++..+.. ...+ .++++++..++..+.
T Consensus 307 ~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~------------------~~~~---~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 307 IEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA------------------HHRV---SITDDAIEAAVKLSDRY 364 (758)
T ss_dssp HTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG------------------GSSC---SCCHHHHHHHHHHHHHS
T ss_pred hhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH------------------hcCC---CCCHHHHHHHHHHhhcc
Confidence 7999999999 67999999999999999987665432 1112 378888888877643
Q ss_pred ---CCCHHHHHHHHHHHHHHH
Q 006700 577 ---GFSGREIAKLMASVQAAV 594 (635)
Q Consensus 577 ---G~sgrdI~~L~~~~q~aa 594 (635)
++.+.....++..+.+.+
T Consensus 365 i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp SCCSCTTHHHHHHHHHHHHHH
T ss_pred cccCcCCcHHHHHHHHHHHHH
Confidence 556666666776554443
No 80
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.60 E-value=2.7e-15 Score=160.11 Aligned_cols=206 Identities=23% Similarity=0.295 Sum_probs=145.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCC--eeeccCCCcccch--hhHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPLG--AQAVTK 433 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~--~~~l~~~~~~~~~--~~~~~~ 433 (635)
..++|.+.....+...+........ ++||+|++||||+++|+.++..++.. |+.++|+.+..-. .+..+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~------~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKA------PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCS------CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhccch------hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc
Confidence 5688998888888877776665433 39999999999999999999988644 9999999875421 111111
Q ss_pred H-----------HHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-----C---CCCCEEEEEE
Q 006700 434 I-----------HEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-----D---QSRDIVLVLA 494 (635)
Q Consensus 434 l-----------~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-----~---~~~~viiI~t 494 (635)
. .+.|..+ .+++||||||+.| +...+..|..+++.-. . ...++.||++
T Consensus 203 ~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 203 EKGAFTGALTRKKGKLELA----DQGTLFLDEVGEL---------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp CSCSSSSCCCCEECHHHHT----TTSEEEEETGGGS---------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred cccccCCcccccCChHhhc----CCCeEEecChhhC---------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 1 1233333 2679999999987 5677788877776532 1 1236889999
Q ss_pred eCCC-------CCCcHHHHccccc-eEecCCCCH--HHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCC
Q 006700 495 TNRP-------GDLDSAITDRIDE-VIEFPLPRE--EERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564 (635)
Q Consensus 495 tN~~-------~~l~~~l~~R~d~-~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (635)
||.. ..+.+.+..|+.. .|.+|+... +++..|+.+++.++.. ..+.....++
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~------------------~~~~~~~~~~ 331 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAK------------------EYKKNCFELS 331 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHH------------------HTTCCCCCBC
T ss_pred cCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHH------------------HcCCCCCCcC
Confidence 9953 4677889999843 345555544 5666788888877643 1122223589
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccC
Q 006700 565 DNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLD 603 (635)
Q Consensus 565 ~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt 603 (635)
++++..|..+ .|+| +++.|.+.++.++..+.+..|+
T Consensus 332 ~~a~~~L~~~--~wpG-NvreL~n~i~~~~~~~~~~~i~ 367 (368)
T 3dzd_A 332 EETKEYLMKQ--EWKG-NVRELKNLIERAVILCEGEVIK 367 (368)
T ss_dssp HHHHHHHHTC--CCTT-HHHHHHHHHHHHHHTCCSSBCC
T ss_pred HHHHHHHHhC--CCCc-HHHHHHHHHHHHHHhCCCCccC
Confidence 9999999955 6766 9999999999998887766665
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.57 E-value=5.7e-15 Score=136.45 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=92.7
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHHHHHH
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIH 435 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~~~l~ 435 (635)
++||.+.....+...+....... .++||+||||||||++|++|+..+ +.+|+ ++|+.+... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~------~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETD------IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCC------SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCC------CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhh
Confidence 57898888888877776654322 359999999999999999999987 67888 988876543 2344
Q ss_pred HHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-------CCCcHHHHcc
Q 006700 436 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-------GDLDSAITDR 508 (635)
Q Consensus 436 ~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-------~~l~~~l~~R 508 (635)
..|..+. +++|||||+|.+ +...+..|..++ .....++.||+|||.+ ..+.+.+..|
T Consensus 70 ~~~~~a~----~g~l~ldei~~l---------~~~~q~~Ll~~l---~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 70 DFIALAQ----GGTLVLSHPEHL---------TREQQYHLVQLQ---SQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp HHHHHHT----TSCEEEECGGGS---------CHHHHHHHHHHH---HSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred cHHHHcC----CcEEEEcChHHC---------CHHHHHHHHHHH---hhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 4555543 579999999987 344455555554 3345567899999964 3678888888
Q ss_pred cc-ceEecCC
Q 006700 509 ID-EVIEFPL 517 (635)
Q Consensus 509 ~d-~~i~~~~ 517 (635)
+. ..|.+|+
T Consensus 134 l~~~~i~lPp 143 (145)
T 3n70_A 134 FAMTQIACLP 143 (145)
T ss_dssp HHHHEEECCC
T ss_pred hcCCEEeCCC
Confidence 74 2355554
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.53 E-value=6.7e-15 Score=135.66 Aligned_cols=131 Identities=12% Similarity=0.226 Sum_probs=91.0
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHH
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 438 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f 438 (635)
+++|.+...+.+...+....... .++||+||||||||++|++++..++ +|+.++|+.+.. ....+.|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~------~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~------~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRT------SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI------DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCS------SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH------HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh------HhhhhHH
Confidence 57899988888888777654322 3599999999999999999999888 999999876432 1134555
Q ss_pred HHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-CC----CcHHHHcccc-ce
Q 006700 439 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-GD----LDSAITDRID-EV 512 (635)
Q Consensus 439 ~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~-~~----l~~~l~~R~d-~~ 512 (635)
..+. +++|||||+|.+ +...+..|..++.... ..++.+|+|||.+ .. +++.+..||. ..
T Consensus 72 ~~a~----~~~l~lDei~~l---------~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~ 136 (143)
T 3co5_A 72 QKAE----GGVLYVGDIAQY---------SRNIQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLAGLFSESV 136 (143)
T ss_dssp HHTT----TSEEEEEECTTC---------CHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEE
T ss_pred HhCC----CCeEEEeChHHC---------CHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcE
Confidence 5443 679999999987 3455555555555432 4568899999843 33 5667777873 34
Q ss_pred EecCC
Q 006700 513 IEFPL 517 (635)
Q Consensus 513 i~~~~ 517 (635)
|.+|+
T Consensus 137 i~lPp 141 (143)
T 3co5_A 137 VRIPP 141 (143)
T ss_dssp EEECC
T ss_pred EeCCC
Confidence 55554
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=3.2e-13 Score=145.40 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=147.6
Q ss_pred cccCCccccChHHHHHHHHHH-HHHhcccccCCCCceEEE--ecCCCCChHHHHHHHHHHh---------CCCeeeccCC
Q 006700 354 IKNNGDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLF--YGPPGTGKTMVAREIARKS---------GLDYAMMTGG 421 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~-~~~~~~~~~~~p~~~iLL--~GppGtGKT~lA~~lA~~l---------~~~~~~l~~~ 421 (635)
......++|.+...+.|...+ ....... ...+.+++| +||||||||++++.+++.+ +..++.++|.
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 334478999998888887776 5443220 022357999 9999999999999999876 4456677654
Q ss_pred Ccccc------------------hhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC
Q 006700 422 DVAPL------------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG 483 (635)
Q Consensus 422 ~~~~~------------------~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~ 483 (635)
..... +......+..+.........+.||||||++.+...+.. +......+..++....
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~---~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI---AAEDLYTLLRVHEEIP 172 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS---CHHHHHHHHTHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc---chHHHHHHHHHHHhcc
Confidence 32110 00011112222222223345789999999988532100 1122222222233222
Q ss_pred CCC--CCEEEEEEeCCCC---CCc---HHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhh
Q 006700 484 DQS--RDIVLVLATNRPG---DLD---SAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 555 (635)
Q Consensus 484 ~~~--~~viiI~ttN~~~---~l~---~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 555 (635)
... .++.||++||.++ .++ +.+.+++...+.|++++.++...|+...+..... .
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~----------------- 234 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-D----------------- 234 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-T-----------------
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-C-----------------
Confidence 113 6788998987654 344 6677788767999999999999999887764322 0
Q ss_pred hhhhccCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Q 006700 556 QKITIKDLSDNVIQEAARKTE------GFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614 (635)
Q Consensus 556 ~~~~~~~~~~~~l~~la~~t~------G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~ 614 (635)
..++++.+..++..+. | .++.+..++..+...+...+...++.+++..++...
T Consensus 235 -----~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 235 -----TVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp -----TSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred -----CCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 1278889999999998 7 666777777655555555556678999988877654
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=9e-14 Score=144.43 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=105.2
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh------CCCeeeccCCCcccchhhHHHHHH
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIH 435 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l------~~~~~~l~~~~~~~~~~~~~~~l~ 435 (635)
|++++.+.|...+. .. . .+++|||||||||||++|+++++.+ ..++..+++.+- . .....++
T Consensus 1 g~~~~~~~L~~~i~---~~----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~---~~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIE---KS----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-N---IGIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHH---TC----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-C---BCHHHHH
T ss_pred ChHHHHHHHHHHHH---CC----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-C---CCHHHHH
Confidence 45556666655443 22 2 3589999999999999999999864 235666654320 1 2233455
Q ss_pred HHHHHHhhc---CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccce
Q 006700 436 EIFDWAKKS---KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEV 512 (635)
Q Consensus 436 ~~f~~a~~~---~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~ 512 (635)
.++..+... ..+.|+||||+|.|. ....|.|+..+++++.+++||++||.+..+.+.+++| +
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 666665433 346899999999883 2346788888888899999999999999999999999 8
Q ss_pred EecCCCCHHHHHHHHHHHH
Q 006700 513 IEFPLPREEERFKLLKLYL 531 (635)
Q Consensus 513 i~~~~p~~~er~~Il~~~l 531 (635)
+.|++|+.++...++...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999888876
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.46 E-value=3.7e-13 Score=152.89 Aligned_cols=224 Identities=18% Similarity=0.196 Sum_probs=141.8
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCe---eeccCCCccc--
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDY---AMMTGGDVAP-- 425 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~---~~l~~~~~~~-- 425 (635)
..++..|++++|++.+.+.+...+.. ..+++|+||||||||++|++|+..+.... +.+.+.....
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~----------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ----------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS
T ss_pred cccccccceEECchhhHhhccccccC----------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC
Confidence 34556789999999998877665442 13699999999999999999999885332 1221111100
Q ss_pred ----c---h------------------------------------------------hhHHHHHHHHHHHH---------
Q 006700 426 ----L---G------------------------------------------------AQAVTKIHEIFDWA--------- 441 (635)
Q Consensus 426 ----~---~------------------------------------------------~~~~~~l~~~f~~a--------- 441 (635)
+ + .........+|...
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 0 0 00000011111100
Q ss_pred -------------hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------------------CCCCCEE
Q 006700 442 -------------KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------------------DQSRDIV 490 (635)
Q Consensus 442 -------------~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------------------~~~~~vi 490 (635)
.....+++|||||++.+ +...+..|..+|..-. ..+.++.
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l---------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATL---------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGS---------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred ccccccccccCceeeecCCCEEEEechhhC---------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 00123579999999987 3556666666665321 1134788
Q ss_pred EEEEeCCC--CCCcHHHHcccc---ceEecCCC---CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccC
Q 006700 491 LVLATNRP--GDLDSAITDRID---EVIEFPLP---REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562 (635)
Q Consensus 491 iI~ttN~~--~~l~~~l~~R~d---~~i~~~~p---~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
||+|||.. ..++++|++||+ ..+.|+.. +.+....++..+...... .-....
T Consensus 255 vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~ 314 (604)
T 3k1j_A 255 LVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR--------------------DGKIPH 314 (604)
T ss_dssp EEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH--------------------HCSSCC
T ss_pred EEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh--------------------ccCccc
Confidence 99999976 679999999996 45555432 234455555444333221 000113
Q ss_pred CCHHHHHHHHHHc---CCC------CHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 563 LSDNVIQEAARKT---EGF------SGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 563 ~~~~~l~~la~~t---~G~------sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
++++++..|...+ .|- +.|++.+++..+...+.......||.+++.+++..
T Consensus 315 ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 315 FTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp BBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 7899999888754 453 68999999988877777777789999999999864
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=3.4e-10 Score=144.81 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=95.5
Q ss_pred ceEEEecCCCCChHHHHHH-HHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhh--------------cCCcEEEEe
Q 006700 388 RNMLFYGPPGTGKTMVARE-IARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK--------------SKKGLLLFI 452 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~-lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~--------------~~~~~vL~i 452 (635)
+++||+||||||||++|+. ++...+..++.++++.... ...+...+..... .++.+||||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts-----~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT-----TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC-----HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC-----HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 3699999999999999955 4444466777777665432 1233333333210 123479999
Q ss_pred cCchhhhhhcccccCcHHHHHHHHHHHHHhC--C-C------CCCEEEEEEeCCCC-----CCcHHHHccccceEecCCC
Q 006700 453 DEADAFLCERNSIHMSEAQRSALNALLFRTG--D-Q------SRDIVLVLATNRPG-----DLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 453 DEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~-~------~~~viiI~ttN~~~-----~l~~~l~~R~d~~i~~~~p 518 (635)
||++....++ .+ +....+.|..++..-+ + . ..++.+|+|+|++. .++++|++|| .++.++.|
T Consensus 1343 DEinmp~~d~--yg-~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P 1418 (2695)
T 4akg_A 1343 DEINLPKLDK--YG-SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYP 1418 (2695)
T ss_dssp ETTTCSCCCS--SS-CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCC
T ss_pred cccccccccc--cC-chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCC
Confidence 9998633222 12 2234566676664322 1 1 13689999999984 7999999999 89999999
Q ss_pred CHHHHHHHHHHHHHhhc
Q 006700 519 REEERFKLLKLYLKKYL 535 (635)
Q Consensus 519 ~~~er~~Il~~~l~~~~ 535 (635)
+.+++..|+..++..+.
T Consensus 1419 ~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1419 SGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp TTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987764
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.20 E-value=1.5e-10 Score=124.69 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=131.3
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHH-HHHhCCCeee-ccCCCcccchhh---H--HH
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-ARKSGLDYAM-MTGGDVAPLGAQ---A--VT 432 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~l-A~~l~~~~~~-l~~~~~~~~~~~---~--~~ 432 (635)
|+|++.++..|.-.+. .+....+..-|+||.|+||| ||++++++ +..+....+. ..++....+.+. . ..
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~ 290 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWA 290 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEE
T ss_pred cCCCHHHHHHHHHHHc---CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcc
Confidence 9999998777753322 11100111126999999999 99999999 7765433221 111110000000 0 00
Q ss_pred HHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC------CCCCCEEEEEEeCCCC-------
Q 006700 433 KIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG------DQSRDIVLVLATNRPG------- 499 (635)
Q Consensus 433 ~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~------~~~~~viiI~ttN~~~------- 499 (635)
.-.+.+..| .++|||||||+.+ +...+..|...++.-. ..+.++.||+|+|+..
T Consensus 291 ~~~G~l~LA----dgGvl~lDEIn~~---------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s 357 (506)
T 3f8t_A 291 LRAGAAVLA----DGGILAVDHLEGA---------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPP 357 (506)
T ss_dssp EEECHHHHT----TTSEEEEECCTTC---------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCG
T ss_pred cCCCeeEEc----CCCeeehHhhhhC---------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCC
Confidence 001122222 2579999999987 4556666666665421 2346789999999865
Q ss_pred ----CCcHHHHccccceEe-cCCCCHHHHH---------HHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCH
Q 006700 500 ----DLDSAITDRIDEVIE-FPLPREEERF---------KLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565 (635)
Q Consensus 500 ----~l~~~l~~R~d~~i~-~~~p~~~er~---------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (635)
.|++++++|||.++. ++.|+.+.-. +.+..|..-.. . ..+. ..+++
T Consensus 358 ~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar-----------------~--~~~~-p~ls~ 417 (506)
T 3f8t_A 358 IARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI-----------------R--EHPA-PELTE 417 (506)
T ss_dssp GGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH-----------------H--HCSC-CEECH
T ss_pred ccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH-----------------h--cCCC-ceeCH
Confidence 789999999987554 4666654321 11111111000 0 0001 12455
Q ss_pred HHHHHHHH-----------------HcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhhhhhcccc
Q 006700 566 NVIQEAAR-----------------KTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIKL 624 (635)
Q Consensus 566 ~~l~~la~-----------------~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~~~~~~~~~~~l 624 (635)
++.+.|.. ..-|.|+|.+..|+..+++.|.......++.+|+..++.-+.. +.+.+..
T Consensus 418 ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~-Sl~~~a~ 492 (506)
T 3f8t_A 418 EARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW-YLETAMQ 492 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH-HHHHhcC
Confidence 54444332 1347899999999999999999999999999999999987664 3444433
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=9.5e-11 Score=111.62 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=77.6
Q ss_pred cccCCcccc-ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCCcccchh
Q 006700 354 IKNNGDIIL-HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLGA 428 (635)
Q Consensus 354 ~~~~~~vig-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~~~~~~~ 428 (635)
..+|+++++ .+.....+..+...+.+.... +..+++|+||||||||+++++++..+ |..++.+++.++.....
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 457899987 455556665555555543322 23579999999999999999999887 55555555443321100
Q ss_pred hHH--HHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006700 429 QAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 499 (635)
Q Consensus 429 ~~~--~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~ 499 (635)
... ......+... ..+.+|||||++.. +.+...+..+..++..... .+..+|+|||.+.
T Consensus 84 ~~~~~~~~~~~~~~~---~~~~llilDE~~~~-------~~~~~~~~~l~~ll~~~~~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 84 HLMDEGKDTKFLKTV---LNSPVLVLDDLGSE-------RLSDWQRELISYIITYRYN--NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTCCSHHHHHH---HTCSEEEEETCSSS-------CCCHHHHHHHHHHHHHHHH--TTCEEEEECCCCS
T ss_pred HHhcCchHHHHHHHh---cCCCEEEEeCCCCC-------cCCHHHHHHHHHHHHHHHH--cCCCEEEEcCCCh
Confidence 000 0000112211 23679999999843 2245556666666654421 2356888888654
No 89
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.12 E-value=4.3e-10 Score=118.46 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=126.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CC-C--eeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchh-hh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GL-D--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA-FL 459 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~-~--~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~-l~ 459 (635)
.+.+|||||+|+||++.++.|++.+ +. + ++.+++ ......+............+.|++|||++. +.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 3479999999999999999998875 22 2 222221 112222322222222345578999999987 52
Q ss_pred hhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHh
Q 006700 460 CERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKK 533 (635)
Q Consensus 460 ~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~ 533 (635)
....+.|+..+++++.++++|++++..+ .+.+.+.+|+ .++.|.+++..+....+...+..
T Consensus 91 ------------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 91 ------------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp ------------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 1245667777777778888888876543 4668888999 89999999999999999888876
Q ss_pred hcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Q 006700 534 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613 (635)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~lt~~~i~~~l~~ 613 (635)
... .++++++..|+..+.| |++.+.+.++..+...++..||.++|..++..
T Consensus 158 ~g~-------------------------~i~~~a~~~l~~~~~g----dl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 158 LNL-------------------------ELDDAANQVLCYCYEG----NLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp TTC-------------------------EECHHHHHHHHHSSTT----CHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred cCC-------------------------CCCHHHHHHHHHHhch----HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 543 2889999999998877 66666666655554334568999999888765
Q ss_pred HH
Q 006700 614 KV 615 (635)
Q Consensus 614 ~~ 615 (635)
..
T Consensus 209 ~~ 210 (343)
T 1jr3_D 209 AA 210 (343)
T ss_dssp HC
T ss_pred hh
Confidence 43
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.98 E-value=1.6e-08 Score=105.75 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=109.8
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcc------c------
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA------P------ 425 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~------~------ 425 (635)
..++|.+.....|...+.. + +.++|+||+|+|||++++.+++..+ ++.+++.... +
T Consensus 12 ~~~~gR~~el~~L~~~l~~-------~---~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-------Y---PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc-------C---CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHH
Confidence 6789999888888776543 1 4699999999999999999999875 4444432210 0
Q ss_pred -----ch----------------hh----HHHHHHHHHHHH----hhcCCcEEEEecCchhhhhhcccccCcHHHHHHHH
Q 006700 426 -----LG----------------AQ----AVTKIHEIFDWA----KKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALN 476 (635)
Q Consensus 426 -----~~----------------~~----~~~~l~~~f~~a----~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~ 476 (635)
+. +. ....+..++... .... +.||+|||++.+..... ..+......|.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~--~~~~~~~~~L~ 156 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGS--RGGKELLALFA 156 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTT--TTTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCc--cchhhHHHHHH
Confidence 00 00 001122232222 1123 78999999998743100 01123344455
Q ss_pred HHHHHhCCCCCCEEEEEEeCCCC---------CCcHHHHccccceEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccch
Q 006700 477 ALLFRTGDQSRDIVLVLATNRPG---------DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKW 547 (635)
Q Consensus 477 ~ll~~~~~~~~~viiI~ttN~~~---------~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~ 547 (635)
.++... .++.+|+|+.... .....+..|+...+.+++++.++..+++...+.....
T Consensus 157 ~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----------- 221 (350)
T 2qen_A 157 YAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----------- 221 (350)
T ss_dssp HHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-----------
T ss_pred HHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-----------
Confidence 544332 4678888775421 1112234466568999999999999998876654322
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 006700 548 GHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLM 587 (635)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~ 587 (635)
.++++.+..+...|.|+.. -|..++
T Consensus 222 --------------~~~~~~~~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 222 --------------DVPENEIEEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp --------------CCCHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred --------------CCCHHHHHHHHHHhCCCHH-HHHHHH
Confidence 1456667777777767443 444443
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=2.1e-09 Score=99.48 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhc
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER 462 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r 462 (635)
+...++|+||+|+|||+++++++..+ |..++.+++.++... .+ ...+.||+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~~-----~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------DA-----AFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------GG-----GGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------HH-----HhCCCEEEEeCccccCh--
Confidence 34579999999999999999999987 666777777665533 00 12367999999987532
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCCCc--HHHHccccceEecC
Q 006700 463 NSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN-RPGDLD--SAITDRIDEVIEFP 516 (635)
Q Consensus 463 ~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN-~~~~l~--~~l~~R~d~~i~~~ 516 (635)
.. +..|..++....+.. ..++|+||| .+..+. +.+.+||..-+.+.
T Consensus 98 ------~~-~~~l~~li~~~~~~g-~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 98 ------EE-QALLFSIFNRFRNSG-KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ------HH-HHHHHHHHHHHHHHT-CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ------HH-HHHHHHHHHHHHHcC-CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 12 444444544432222 224666777 444332 89999986555444
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.94 E-value=2.3e-09 Score=103.54 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHM 467 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~ 467 (635)
+++|||||||||||++|.+|++.++..++.+..... .. +........||+|||++.-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f-------------~l~~l~~~kIiiLDEad~~~-------- 116 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HF-------------WLEPLTDTKVAMLDDATTTC-------- 116 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CG-------------GGGGGTTCSSEEEEEECHHH--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hh-------------hhcccCCCCEEEEECCCchh--------
Confidence 479999999999999999999998655443321110 00 01111124589999998431
Q ss_pred cHHHHHHHHHHHHHh----CCCC------CCEEEEEEeCCC---CCCcHHHHccccceEecCCC
Q 006700 468 SEAQRSALNALLFRT----GDQS------RDIVLVLATNRP---GDLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 468 ~~~~~~~L~~ll~~~----~~~~------~~viiI~ttN~~---~~l~~~l~~R~d~~i~~~~p 518 (635)
.......+..++... +... ....+|+|||.. +..-..+.||+ .++.|+.|
T Consensus 117 ~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 117 WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 112223344444332 1111 124799999963 33447899999 78888754
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.93 E-value=1.1e-09 Score=105.97 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=59.2
Q ss_pred cccCCccccCh-HHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcccchhh
Q 006700 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ 429 (635)
Q Consensus 354 ~~~~~~vig~~-~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~~~~~ 429 (635)
..+|+++++.+ .....+..+...+...... .++.+++|+||||||||+++++++..+ +.+++.+++..+......
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH 99 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH
Confidence 45789999865 4444444444443332211 123689999999999999999999987 566666665443210000
Q ss_pred --HHHHHHHHHHHHhhcCCcEEEEecCchhh
Q 006700 430 --AVTKIHEIFDWAKKSKKGLLLFIDEADAF 458 (635)
Q Consensus 430 --~~~~l~~~f~~a~~~~~~~vL~iDEid~l 458 (635)
....+...+..... +.+|||||++..
T Consensus 100 ~~~~~~~~~~~~~~~~---~~~lilDei~~~ 127 (202)
T 2w58_A 100 SLQDQTMNEKLDYIKK---VPVLMLDDLGAE 127 (202)
T ss_dssp C---CCCHHHHHHHHH---SSEEEEEEECCC
T ss_pred HhccchHHHHHHHhcC---CCEEEEcCCCCC
Confidence 00011222222222 459999999754
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=4e-08 Score=102.79 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc-----cc---chh
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-----AP---LGA 428 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~-----~~---~~~ 428 (635)
...++|.+.....|.. +. . +.++|+||+|+|||++++.+++.++..++.+++... .+ ...
T Consensus 12 ~~~~~gR~~el~~L~~-l~---~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR---A--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC---S--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hc---C--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHH
Confidence 3678898877776654 32 1 369999999999999999999988776666665432 00 000
Q ss_pred h---------------------------------------HHHHHHHHHHHHhhcC-CcEEEEecCchhhhhhcccccCc
Q 006700 429 Q---------------------------------------AVTKIHEIFDWAKKSK-KGLLLFIDEADAFLCERNSIHMS 468 (635)
Q Consensus 429 ~---------------------------------------~~~~l~~~f~~a~~~~-~~~vL~iDEid~l~~~r~~~~~~ 468 (635)
. ....+..++....... .+.||+|||++.+....+
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~----- 154 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG----- 154 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT-----
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc-----
Confidence 0 0112334444443332 378999999998753100
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC---------CcHHHHccccceEecCCCCHHHHHHHHHHHHHhh
Q 006700 469 EAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------LDSAITDRIDEVIEFPLPREEERFKLLKLYLKKY 534 (635)
Q Consensus 469 ~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~---------l~~~l~~R~d~~i~~~~p~~~er~~Il~~~l~~~ 534 (635)
......|..+.... .++.+|+|++.... ....+..|+...+.+++++.++..+++...+...
T Consensus 155 ~~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~ 225 (357)
T 2fna_A 155 VNLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA 225 (357)
T ss_dssp CCCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc
Confidence 11123344444322 36788888765321 1122344655789999999999999998876543
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.87 E-value=1e-07 Score=122.19 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=107.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEI 437 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~ 437 (635)
..+|..|-..+.+..+..++... .++++.||+|||||++++.||+.+|.+++.++|++-... ..+..+
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~ 690 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRL 690 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHH
T ss_pred CcceecHHHHHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHH
Confidence 35677788877777776665532 248999999999999999999999999999999874432 234556
Q ss_pred HHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHH----hC-------------CCCCCEEEEEEeCC---
Q 006700 438 FDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR----TG-------------DQSRDIVLVLATNR--- 497 (635)
Q Consensus 438 f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~----~~-------------~~~~~viiI~ttN~--- 497 (635)
|..+... |.+++|||++.+ +.....++...+.. +. ....++.|++|.|+
T Consensus 691 ~~g~~~~--Gaw~~~DE~nr~---------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~ 759 (2695)
T 4akg_A 691 LVGITQI--GAWGCFDEFNRL---------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN 759 (2695)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS
T ss_pred HHHHHhc--CCEeeehhhhhc---------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc
Confidence 6555544 579999999987 34444444333322 10 12356788999994
Q ss_pred -CCCCcHHHHccccceEecCCCCHHHHHHHHH
Q 006700 498 -PGDLDSAITDRIDEVIEFPLPREEERFKLLK 528 (635)
Q Consensus 498 -~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~ 528 (635)
...+++++.+|| ..|.+..|+.+...+|+-
T Consensus 760 g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 760 GRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp SSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred CcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 347999999999 899999999988777753
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=7.1e-09 Score=100.64 Aligned_cols=127 Identities=17% Similarity=0.261 Sum_probs=78.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHH--------hC-CCeeeccCCCcc--cc---h------hhHH--HHHHHHHHHH-hhc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK--------SG-LDYAMMTGGDVA--PL---G------AQAV--TKIHEIFDWA-KKS 444 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~--------l~-~~~~~l~~~~~~--~~---~------~~~~--~~l~~~f~~a-~~~ 444 (635)
..+||+|+||||||++|..++.. .| .+++..++.++. .. . .... .....++.|+ ...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999999886443 24 555444433321 11 0 0000 0112344442 112
Q ss_pred CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhC-CCCCCEEEEEEeCCCCCCcHHHHccccceEecCCCCHH
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREE 521 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~-~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~ 521 (635)
..++||||||++.+++.+.... +. . .++..+. .....+.||++++.+..++..+++|++..+++..|...
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~-~----rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KI-P----ENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CC-C----HHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred cCceEEEEEChhhhccCccccc--hh-H----HHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 3478999999999976553211 11 1 1333332 33456788999999999999999999999999876544
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.75 E-value=6e-08 Score=125.02 Aligned_cols=138 Identities=17% Similarity=0.296 Sum_probs=91.5
Q ss_pred eEEEecCCCCChHHHHHHHHH-HhCCCeeeccCCCcccchhhHHHHHHHHHHHH----hh-----------cCCcEEEEe
Q 006700 389 NMLFYGPPGTGKTMVAREIAR-KSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWA----KK-----------SKKGLLLFI 452 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~-~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a----~~-----------~~~~~vL~i 452 (635)
++||+||||||||+++..+.. ..+.+++.++++.-.. ...+.+.+... .. .++..||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt-----a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT-----PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC-----HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC-----HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 499999999999987755443 3455677777765332 12233333321 00 122369999
Q ss_pred cCchhhhhhcccccCcHHHHHHHHHHHHHhC--C-------CCCCEEEEEEeCCCC-----CCcHHHHccccceEecCCC
Q 006700 453 DEADAFLCERNSIHMSEAQRSALNALLFRTG--D-------QSRDIVLVLATNRPG-----DLDSAITDRIDEVIEFPLP 518 (635)
Q Consensus 453 DEid~l~~~r~~~~~~~~~~~~L~~ll~~~~--~-------~~~~viiI~ttN~~~-----~l~~~l~~R~d~~i~~~~p 518 (635)
||++.- ..+..+ +......|..++..-+ + .-.++.+|+|+|++. .+++.|++|| .++.++.|
T Consensus 1381 DDiNmp--~~D~yG-tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~~p 1456 (3245)
T 3vkg_A 1381 DEINLP--STDKYG-TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVDFP 1456 (3245)
T ss_dssp TTTTCC--CCCTTS-CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECCCC
T ss_pred cccCCC--Cccccc-cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeCCC
Confidence 999853 222222 1234556666665422 1 124688999999873 6999999999 88999999
Q ss_pred CHHHHHHHHHHHHHhhc
Q 006700 519 REEERFKLLKLYLKKYL 535 (635)
Q Consensus 519 ~~~er~~Il~~~l~~~~ 535 (635)
+.++...|+..++..+.
T Consensus 1457 s~esL~~If~til~~~l 1473 (3245)
T 3vkg_A 1457 STSSLTQIYGTFNRALM 1473 (3245)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.66 E-value=9.7e-09 Score=106.63 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=55.1
Q ss_pred cccCCccccCh-HHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC----CCeeeccCCCccc-ch
Q 006700 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTGGDVAP-LG 427 (635)
Q Consensus 354 ~~~~~~vig~~-~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~----~~~~~l~~~~~~~-~~ 427 (635)
..+|+++++.. .....+..+...+..... .+..+++|+||||||||++|.+++..+. .+++.++++++.. +.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 35789998755 333333333333332211 1346899999999999999999998764 5665555443211 00
Q ss_pred h-hHHHHHHHHHHHHhhcCCcEEEEecCchhh
Q 006700 428 A-QAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458 (635)
Q Consensus 428 ~-~~~~~l~~~f~~a~~~~~~~vL~iDEid~l 458 (635)
. ...+.+...+.... ...||||||++..
T Consensus 198 ~~~~~~~~~~~~~~~~---~~~lLiiDdig~~ 226 (308)
T 2qgz_A 198 NAISNGSVKEEIDAVK---NVPVLILDDIGAE 226 (308)
T ss_dssp CCCC----CCTTHHHH---TSSEEEEETCCC-
T ss_pred HHhccchHHHHHHHhc---CCCEEEEcCCCCC
Confidence 0 00001111122222 2469999999654
No 99
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.65 E-value=5.7e-08 Score=79.41 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 006700 516 PLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVY 595 (635)
Q Consensus 516 ~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~ 595 (635)
|+|+.++|.+||+.++.++.. -++.++..|+..|+||||+||..+|+.+...+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~--------------------------~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~ 54 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYAL 54 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE--------------------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCC--------------------------CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999999877653 133458999999999999999999987777777
Q ss_pred cCCCCccCHHHHHHHHHHHHh
Q 006700 596 ARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 596 ~s~~~~lt~~~i~~~l~~~~~ 616 (635)
..+...||.+||..+++....
T Consensus 55 ~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 55 RERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HTTCSEECHHHHHHHHHHHHC
T ss_pred HhCCCCCCHHHHHHHHHHHHh
Confidence 777788999999999988653
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.61 E-value=2.1e-07 Score=93.82 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=71.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccccc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIH 466 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~ 466 (635)
.++++||||||||||++|.+||..++. +-.++.+.-. -.|. ......|+++||....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~-----------f~l~---~~~~k~i~l~Ee~~~~-------- 160 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNEN-----------FPFN---DCVDKMVIWWEEGKMT-------- 160 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSS-----------CTTG---GGSSCSEEEECSCCEE--------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccccc-----------cccc---cccccEEEEeccccch--------
Confidence 457999999999999999999997654 2222222100 0111 1112346677776543
Q ss_pred CcHHHHHHHHHHHHH----hC-C-----CCCCEEEEEEeCC-C----------CCCcHHHHccccceEecC--------C
Q 006700 467 MSEAQRSALNALLFR----TG-D-----QSRDIVLVLATNR-P----------GDLDSAITDRIDEVIEFP--------L 517 (635)
Q Consensus 467 ~~~~~~~~L~~ll~~----~~-~-----~~~~viiI~ttN~-~----------~~l~~~l~~R~d~~i~~~--------~ 517 (635)
......+..++.. ++ . .-....||+|||. + +...+.|.+|+ .++.|+ +
T Consensus 161 --~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 161 --AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp --TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCC
T ss_pred --hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCC
Confidence 1112234444431 11 1 1145678999996 1 25668899999 888888 6
Q ss_pred CCHHHHHHHHHH
Q 006700 518 PREEERFKLLKL 529 (635)
Q Consensus 518 p~~~er~~Il~~ 529 (635)
.+.++....+..
T Consensus 238 lt~~~~~~f~~w 249 (267)
T 1u0j_A 238 VTKQEVKDFFRW 249 (267)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 778888888873
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.55 E-value=1e-07 Score=117.41 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=85.4
Q ss_pred ccccccCCccccChHHHHHHHHHHHHHh-c-------------ccc-----------------cCCCCce--EEEecCCC
Q 006700 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-N-------------TKI-----------------HQAPFRN--MLFYGPPG 397 (635)
Q Consensus 351 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~-------------~~~-----------------~~~p~~~--iLL~GppG 397 (635)
..+...|.+|-|.++++..+...+...- . ... .+.+|++ +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4556889999999888887766554322 1 011 2334555 99999999
Q ss_pred CChHHHHHHHHHHh---CCCeeeccCCCc-------------ccchhh----HHHHHHHHHHHHhhcCCcEEEEecCchh
Q 006700 398 TGKTMVAREIARKS---GLDYAMMTGGDV-------------APLGAQ----AVTKIHEIFDWAKKSKKGLLLFIDEADA 457 (635)
Q Consensus 398 tGKT~lA~~lA~~l---~~~~~~l~~~~~-------------~~~~~~----~~~~l~~~f~~a~~~~~~~vL~iDEid~ 457 (635)
||||+||++++.+. |-+.+.++.... ..+..+ .+..+..+|..++... +++||+|++++
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAA 1171 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGG
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHh
Confidence 99999999999876 334333333221 222233 5677877887776554 89999999999
Q ss_pred hhhhccc---cc--CcHHHHHHHHHHHHHhCC--CCCCEEEEEEeCC
Q 006700 458 FLCERNS---IH--MSEAQRSALNALLFRTGD--QSRDIVLVLATNR 497 (635)
Q Consensus 458 l~~~r~~---~~--~~~~~~~~L~~ll~~~~~--~~~~viiI~ttN~ 497 (635)
+.+.+.. .+ ......++++.+|..++. ...+++|| +||.
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 9988431 11 123445568888877752 23456666 6664
No 102
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.51 E-value=5.2e-08 Score=100.62 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=60.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccC--CCccc-chhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhhhccc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG--GDVAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNS 464 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~--~~~~~-~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~ 464 (635)
+.++|+||||||||+||..++...|.+..+++. .+... +..+....+..++...... + +||||+++.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC-----
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEeccccccccccc
Confidence 457999999999999999999875544333333 22111 1122333344444444433 2 9999999998654332
Q ss_pred c----cCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcH
Q 006700 465 I----HMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS 503 (635)
Q Consensus 465 ~----~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~ 503 (635)
. ......+..+..|..... ..++.+|+++|. ...++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k--~~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAA--SRGCVVIASLNP-TSNDD 240 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHH--HHTCEEEEECCC-SSCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHh--hCCCEEEEEeCC-cccch
Confidence 1 112334455555544333 234678888884 33443
No 103
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=78.37 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=63.8
Q ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 006700 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593 (635)
Q Consensus 514 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~a 593 (635)
.-.+|+.++|.+||+.++.+... -++.++..||..|+||||+||..||+.+-..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l--------------------------~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~ 60 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL--------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMY 60 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE--------------------------CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC--------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999877654 1233578999999999999999999877666
Q ss_pred HHcCCCCccCHHHHHHHHHHHHh
Q 006700 594 VYARPDCVLDSQLFREVVEYKVE 616 (635)
Q Consensus 594 a~~s~~~~lt~~~i~~~l~~~~~ 616 (635)
+.......||.+||..+++...+
T Consensus 61 alr~~~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 61 ALRERRVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCHHHHHHHHHHHcc
Confidence 66666788999999999998765
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=3.1e-06 Score=109.40 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=101.5
Q ss_pred ccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHH
Q 006700 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 438 (635)
Q Consensus 359 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f 438 (635)
.+|--|-..+....+..++.... +..+.||+|||||.+++.||+.+|.+++.++|++-..+. .+..+|
T Consensus 583 rLViTPLTdrcy~tl~~Al~~~~-------gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~ 650 (3245)
T 3vkg_A 583 RLVQTPLTDRCYLTLTQALESRM-------GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIF 650 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTC-------EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHhcC-------CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHH
Confidence 45555666666665555544322 357899999999999999999999999999998744332 344455
Q ss_pred HHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHh---------------C---CCCCCEEEEEEeCC---
Q 006700 439 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRT---------------G---DQSRDIVLVLATNR--- 497 (635)
Q Consensus 439 ~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~---------------~---~~~~~viiI~ttN~--- 497 (635)
..+... |..++||||+.+ ......++...+..+ + ....++.|++|.|+
T Consensus 651 ~G~~~~--GaW~cfDEfNrl---------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 651 VGLCQC--GAWGCFDEFNRL---------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp HHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred hhHhhc--CcEEEehhhhcC---------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 555443 678999999987 233334433322210 1 12346789999995
Q ss_pred -CCCCcHHHHccccceEecCCCCHHHHHHHH
Q 006700 498 -PGDLDSAITDRIDEVIEFPLPREEERFKLL 527 (635)
Q Consensus 498 -~~~l~~~l~~R~d~~i~~~~p~~~er~~Il 527 (635)
...|++.+.+|| ..|.+..|+.+...+|+
T Consensus 720 gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 720 GRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp GCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred CcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 358999999999 88999999998777764
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.28 E-value=2.6e-06 Score=80.97 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=22.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
.+.|.||+|+|||||++.|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 106
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.25 E-value=9.3e-07 Score=73.94 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q 006700 519 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 598 (635)
Q Consensus 519 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~ 598 (635)
+.++|.+||+.++.+... -++.++..||..|+||||+||..||..+-..+....
T Consensus 2 d~~~R~~Il~~~~~~~~~--------------------------~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV--------------------------ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB--------------------------CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCC--------------------------CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 557899999999876543 123458999999999999999999986665665556
Q ss_pred CCccCHHHHHHHHHHHHhhhhhccc
Q 006700 599 DCVLDSQLFREVVEYKVEEHHQRIK 623 (635)
Q Consensus 599 ~~~lt~~~i~~~l~~~~~~~~~~~~ 623 (635)
...||.+||..+++...+...++..
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC-------
T ss_pred cccCCHHHHHHHHHHHhcCcccccc
Confidence 6789999999999998876655543
No 107
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.14 E-value=2.3e-06 Score=70.60 Aligned_cols=75 Identities=7% Similarity=0.119 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q 006700 519 REEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARP 598 (635)
Q Consensus 519 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~ 598 (635)
+.++|..||+.++.+... -++.++..|+..|+||||+||..+|..+-..+....
T Consensus 2 d~~~R~~Il~~~l~~~~~--------------------------~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNL--------------------------SEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCB--------------------------CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCC--------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999876543 123358899999999999999999987666666666
Q ss_pred CCccCHHHHHHHHHHHHhhhh
Q 006700 599 DCVLDSQLFREVVEYKVEEHH 619 (635)
Q Consensus 599 ~~~lt~~~i~~~l~~~~~~~~ 619 (635)
...||.+||..+++...|...
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 678999999999999887544
No 108
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.92 E-value=5.9e-05 Score=84.84 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=35.5
Q ss_pred CccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHH
Q 006700 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 358 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..+||-+.....|...+... ....+.++|+||+|+|||++|..++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 67899998888887665421 12235699999999999999999864
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.84 E-value=6.2e-06 Score=78.79 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC---C-----ccc-chh----hHHHHHHHHHHHHhhcCCcEEEEe
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG---D-----VAP-LGA----QAVTKIHEIFDWAKKSKKGLLLFI 452 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~---~-----~~~-~~~----~~~~~l~~~f~~a~~~~~~~vL~i 452 (635)
-++++||+|+||||++..++..+ |..++.+... . +.. .+. ........++..+. ..+.+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--CCCCEEEE
Confidence 47899999999999986666543 4444333211 0 000 000 00011122222221 24689999
Q ss_pred cCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeC------CCCCCcHHHHccccceEecCC
Q 006700 453 DEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN------RPGDLDSAITDRIDEVIEFPL 517 (635)
Q Consensus 453 DEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN------~~~~l~~~l~~R~d~~i~~~~ 517 (635)
||+..+. +.....+..+. +. ++.||++.. .+-...+.++++.|.+.++..
T Consensus 83 DE~Q~~~---------~~~~~~l~~l~---~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 83 DEVQFFN---------PSLFEVVKDLL---DR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp CCGGGSC---------TTHHHHHHHHH---HT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred ECcccCC---------HHHHHHHHHHH---HC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 9998762 22334444443 22 334444433 222345677778776666543
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.83 E-value=2.3e-05 Score=97.94 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCcc-c-----ch-----------hhHHHHHHHHHHHHhhc
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA-P-----LG-----------AQAVTKIHEIFDWAKKS 444 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~-~-----~~-----------~~~~~~l~~~f~~a~~~ 444 (635)
.+..+++|+||||||||+||.+++... |...+.++..... . ++ ......+..++..+. .
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr-~ 1503 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR-S 1503 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-H
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh-c
Confidence 345689999999999999999998775 3444444433221 1 00 112233444444443 3
Q ss_pred CCcEEEEecCchhhhhh
Q 006700 445 KKGLLLFIDEADAFLCE 461 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~ 461 (635)
..+++||||+++.+.+.
T Consensus 1504 ~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred CCCCEEEEcChhHhccc
Confidence 45899999999988764
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.75 E-value=1.3e-05 Score=85.22 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=55.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhhhh-hcc
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC-ERN 463 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~-~r~ 463 (635)
.+...++|+||||+||||+++.|+..++..++.+.+..-. ....+. ......++|+||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~-----~~~~lg-------~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR-----LNFELG-------VAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT-----HHHHHG-------GGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh-----HHHHHH-------HhcchhHHHHHHHHHHHHHHhh
Confidence 3445799999999999999999999887766553332200 000111 111235679999998764 221
Q ss_pred cccCcHH-HHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006700 464 SIHMSEA-QRSALNALLFRTGDQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 464 ~~~~~~~-~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l 501 (635)
....... ....+..++ + +.+.+++++|+++.+
T Consensus 235 l~~~~~~~~~~~l~~~l---d---G~v~v~~~tn~~~~l 267 (377)
T 1svm_A 235 LPSGQGINNLDNLRDYL---D---GSVKVNLEKKHLNKR 267 (377)
T ss_dssp CCCCSHHHHHHTTHHHH---H---CSSCEEECCSSSCCE
T ss_pred ccccCcchHHHHHHHHh---c---CCCeEeeccCchhhH
Confidence 1110110 112222222 1 234577788887766
No 112
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.69 E-value=0.00018 Score=70.59 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=69.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCc---------ccc----------hhh--HHHHHHHHHHHHhhc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDV---------APL----------GAQ--AVTKIHEIFDWAKKS 444 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~---------~~~----------~~~--~~~~l~~~f~~a~~~ 444 (635)
+++|.|+|||||||++-.+|..+ |..+..++...- ..+ .+. ....+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 69999999999999999998776 666543333110 000 000 1122333322 2
Q ss_pred CCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC------------------CCCcHHHH
Q 006700 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRP------------------GDLDSAIT 506 (635)
Q Consensus 445 ~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~------------------~~l~~~l~ 506 (635)
.|.+|+|||+........ ......+.+ ..++ ...+-+|.|+|.. +.++..++
T Consensus 84 -~pdlvIVDElG~~~~~~~--r~~~~~qDV-~~~l------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 84 -APSLVLVDELAHTNAPGS--RHTKRWQDI-QELL------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp -CCSEEEESCTTCBCCTTC--SSSBHHHHH-HHHH------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred -CCCEEEEeCCCCCCcccc--hhHHHHHHH-HHHH------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 378999999875421111 101122222 2222 2345688888832 45778888
Q ss_pred ccccceEecCCCCHH
Q 006700 507 DRIDEVIEFPLPREE 521 (635)
Q Consensus 507 ~R~d~~i~~~~p~~~ 521 (635)
++.|.++.++.|..+
T Consensus 154 ~~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 154 QEAFDLVLIDLPPRE 168 (228)
T ss_dssp HTCSEEEEBCCCHHH
T ss_pred hhCCeEEEecCCHHH
Confidence 899888888888776
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.68 E-value=0.00012 Score=71.86 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=61.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeeccCC-------Cccc-chhh----HHHHHHHHHHHHhh---cCCcEEE
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG-------DVAP-LGAQ----AVTKIHEIFDWAKK---SKKGLLL 450 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~-------~~~~-~~~~----~~~~l~~~f~~a~~---~~~~~vL 450 (635)
-++++||+|+||||++..++..+ |..++.+... .+.. ++.. .......++..+.. ..++.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 58889999999999998887765 4444444211 1111 1100 01112334444433 2347899
Q ss_pred EecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------CCCCcHHHHccccceEecC
Q 006700 451 FIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNR------PGDLDSAITDRIDEVIEFP 516 (635)
Q Consensus 451 ~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~------~~~l~~~l~~R~d~~i~~~ 516 (635)
+|||+..| +......+..+.. . ++.||++.-. +-...+.++..-|.+..+.
T Consensus 94 iIDEaQ~l---------~~~~ve~l~~L~~----~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 94 GIDEVQFF---------DDRICEVANILAE----N--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp EECSGGGS---------CTHHHHHHHHHHH----T--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred EEecCccC---------cHHHHHHHHHHHh----C--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 99999865 2233344444332 1 4667776652 2233456666555555544
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.65 E-value=0.00015 Score=69.58 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=71.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeec---cCC-C------cccch-------------h----hHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM---TGG-D------VAPLG-------------A----QAVTKIHEI 437 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l---~~~-~------~~~~~-------------~----~~~~~l~~~ 437 (635)
..+++|+++|.||||+|-.++-.. |..+..+ .+. . +..++ . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 369999999999999999987764 5555554 221 0 00110 0 011222334
Q ss_pred HHHHhh---cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCcHHHHccccceEe
Q 006700 438 FDWAKK---SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIE 514 (635)
Q Consensus 438 f~~a~~---~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l~~~l~~R~d~~i~ 514 (635)
+..+.. ...+.+|+|||+...+.-.- . -...++..+...+.+.-||+|+|.+ ++.++..-|.+-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l------~~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~AD~VTe 176 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---L------PLEEVISALNARPGHQTVIITGRGC---HRDILDLADTVSE 176 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---S------CHHHHHHHHHTSCTTCEEEEECSSC---CHHHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---C------CHHHHHHHHHhCcCCCEEEEECCCC---cHHHHHhCcceee
Confidence 444332 35689999999976432110 0 1223444455567778899999984 7888888776666
Q ss_pred cC
Q 006700 515 FP 516 (635)
Q Consensus 515 ~~ 516 (635)
+.
T Consensus 177 m~ 178 (196)
T 1g5t_A 177 LR 178 (196)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 115
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.65 E-value=0.00094 Score=74.04 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=56.0
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCcHHHHccccceEecCCCCHHHH
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEER 523 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--~l~~~l~~R~d~~i~~~~p~~~er 523 (635)
++.||+|||+..|+... .......|..+...- ...++.+|++|.+|. .++..+++-|...|.|...+..+.
T Consensus 343 P~ivvVIDE~~~L~~~~-----~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIV-----GKKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDS 415 (574)
T ss_dssp CEEEEEESCCTTHHHHT-----CHHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHH
T ss_pred CcEEEEEeCHHHHhhhh-----hHHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHH
Confidence 35789999999886432 123344444444332 345789999999887 899999999999999999998888
Q ss_pred HHHHH
Q 006700 524 FKLLK 528 (635)
Q Consensus 524 ~~Il~ 528 (635)
..|+.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77764
No 116
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.62 E-value=1.3e-05 Score=65.97 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCccchhhhhhhhhhhhhccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCc
Q 006700 522 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 601 (635)
Q Consensus 522 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~G~sgrdI~~L~~~~q~aa~~s~~~~ 601 (635)
+|..||+.++.+... .++.++..|+..|+||||+||..+|+.+-..+.......
T Consensus 2 ~R~~Il~~~l~~~~~--------------------------~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~ 55 (82)
T 2dzn_B 2 ERRLIFGTIASKMSL--------------------------APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 55 (82)
T ss_dssp ------------CEE--------------------------CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCCC--------------------------CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 577888888766543 122347788999999999999999987666666666678
Q ss_pred cCHHHHHHHHHHHH
Q 006700 602 LDSQLFREVVEYKV 615 (635)
Q Consensus 602 lt~~~i~~~l~~~~ 615 (635)
||.+||..+++...
T Consensus 56 i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 56 ILQSDLEEAYATQV 69 (82)
T ss_dssp ECHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998875
No 117
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.57 E-value=7.3e-05 Score=74.86 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCCc
Q 006700 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423 (635)
Q Consensus 364 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~~ 423 (635)
+++...+..++..+.........+..++|.||||+||||+++.|+..++..++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 455555666655554443444555689999999999999999999999866666665443
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.55 E-value=0.00017 Score=69.85 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=27.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~~ 422 (635)
..++|+||||+|||+++..++...+..++++++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 46899999999999999999985566666665543
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.52 E-value=0.00012 Score=74.74 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeeccC
Q 006700 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (635)
Q Consensus 364 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~ 420 (635)
.++...+..++............+..++|.||||+||||+++.|+..++..++.+++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 566666776666655444334445679999999999999999999988545555554
No 120
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00014 Score=69.67 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 121
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.00075 Score=82.04 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=82.0
Q ss_pred CCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh---CC----CeeeccCCCccc--ch
Q 006700 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GL----DYAMMTGGDVAP--LG 427 (635)
Q Consensus 357 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l---~~----~~~~l~~~~~~~--~~ 427 (635)
...+||-+.....|...+... ....+.+.|+|+.|+|||+||+.+++.. .. .++.++.+.... ..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 367999998888887765421 1233568899999999999999887652 21 122332222100 00
Q ss_pred --------------------hhHHHHHHHHHHHHhh-cCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCC
Q 006700 428 --------------------AQAVTKIHEIFDWAKK-SKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS 486 (635)
Q Consensus 428 --------------------~~~~~~l~~~f~~a~~-~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~ 486 (635)
......+...+..... ..+..+|+||+++.. . .+.. ..
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------~---~~~~-------~~ 255 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------W---VLKA-------FD 255 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------H---HHTT-------TC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------H---HHHh-------hc
Confidence 0011112222221111 123579999999843 1 1111 13
Q ss_pred CCEEEEEEeCCCCCCcHHHHccccceEecCC-CCHHHHHHHHHHHH
Q 006700 487 RDIVLVLATNRPGDLDSAITDRIDEVIEFPL-PREEERFKLLKLYL 531 (635)
Q Consensus 487 ~~viiI~ttN~~~~l~~~l~~R~d~~i~~~~-p~~~er~~Il~~~l 531 (635)
.+..||+||........ .......+.+++ ++.++-.+++..+.
T Consensus 256 ~~~~ilvTtR~~~~~~~--~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 256 NQCQILLTTRDKSVTDS--VMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp SSCEEEEEESSTTTTTT--CCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHh--hcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 45678888876543211 012235677775 88888888888765
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.49 E-value=0.00036 Score=76.12 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=35.6
Q ss_pred cCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 356 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+|+++ .+.....+..+...+.... ++++|.||||||||+++..++..+
T Consensus 22 ~~~~L--n~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 22 TFDDL--TEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CSSCC--CHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccC--CHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44443 5677777776666554422 269999999999999999998877
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=7.5e-05 Score=70.50 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=28.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+.|+|+|||||||||+++.|++.+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999888754
No 124
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.42 E-value=0.0012 Score=72.71 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=52.2
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCcHHHHccccceEecCCCCHHHHH
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--DLDSAITDRIDEVIEFPLPREEERF 524 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~--~l~~~l~~R~d~~i~~~~p~~~er~ 524 (635)
+.||+|||+..++... .......+..+.+. + ....+.+|++|.++. .++..+++-|...|.|...+..+..
T Consensus 298 ~ivlvIDE~~~ll~~~-----~~~~~~~l~~Lar~-g-Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr 370 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-----GKKVEELIARLAQK-A-RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370 (512)
T ss_dssp EEEEEEETHHHHHHHH-----HHHHHHHHHHHHHH-C-GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHH
T ss_pred cEEEEEeCHHHHHhhh-----hHHHHHHHHHHHHH-h-hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHH
Confidence 3589999998876421 11222333333322 2 233678889998876 6888899989889999999999888
Q ss_pred HHHHH
Q 006700 525 KLLKL 529 (635)
Q Consensus 525 ~Il~~ 529 (635)
.|+..
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 77753
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.40 E-value=0.00036 Score=68.83 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.4
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
..+.|+||+|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00046 Score=67.10 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|+||||+|||+|++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.40 E-value=0.0001 Score=68.98 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=28.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
..|+|+||||+||||+++.|++.++.+|+.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 46999999999999999999999998877643
No 128
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.37 E-value=0.0014 Score=73.19 Aligned_cols=143 Identities=14% Similarity=0.182 Sum_probs=77.7
Q ss_pred ccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHH----HhCCCe---eeccCCCcc-----c---
Q 006700 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR----KSGLDY---AMMTGGDVA-----P--- 425 (635)
Q Consensus 361 ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~----~l~~~~---~~l~~~~~~-----~--- 425 (635)
+|-+.-...|...+.... ....+.+.|+|+.|+|||+||+.+++ .....| +.++.+... .
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 488887777776654321 22345789999999999999999996 232222 122222210 0
Q ss_pred -----chhh------------HHHHHHHHHHHHhhcCCcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCC
Q 006700 426 -----LGAQ------------AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRD 488 (635)
Q Consensus 426 -----~~~~------------~~~~l~~~f~~a~~~~~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~ 488 (635)
++.. ....+...+......++..+|+||+++.. ... .+.. . .+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~-~~~~----~----~g 265 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI-RWAQ----E----LR 265 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH-HHHH----H----TT
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh-cccc----c----CC
Confidence 0000 01112222222222222689999999853 111 1111 1 34
Q ss_pred EEEEEEeCCCCCCcHHHHccccceEecCCCCHHHHHHHHHHH
Q 006700 489 IVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLY 530 (635)
Q Consensus 489 viiI~ttN~~~~l~~~l~~R~d~~i~~~~p~~~er~~Il~~~ 530 (635)
..||+||....... ...-.+..+.+++++.++-..++..+
T Consensus 266 s~ilvTTR~~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 266 LRCLVTTRDVEISN--AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp CEEEEEESBGGGGG--GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHH--HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 57888887532111 00112256889999999888887765
No 129
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.34 E-value=0.00066 Score=71.73 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=47.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------ch----------hhHHHHHHHHHHHHhhcCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~ 447 (635)
...++|+||||+|||+||..++..+ +.++++++...... ++ ......+...+........+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 3468999999999999999998764 55665555433111 00 01122333333333344557
Q ss_pred EEEEecCchhhhh
Q 006700 448 LLLFIDEADAFLC 460 (635)
Q Consensus 448 ~vL~iDEid~l~~ 460 (635)
.+||||.+..+.+
T Consensus 154 ~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 154 DVVVVDSVAALTP 166 (366)
T ss_dssp SEEEEECTTTCCC
T ss_pred CEEEEeChHHhcc
Confidence 8999999999874
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.00012 Score=70.19 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=28.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
...|+|+|||||||||+++.|+..+|.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45799999999999999999999999887654
No 131
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.33 E-value=0.00054 Score=72.05 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=45.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------c----------hhhHHHHHHHHHHHHhhcCCcE
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------L----------GAQAVTKIHEIFDWAKKSKKGL 448 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~----------~~~~~~~l~~~f~~a~~~~~~~ 448 (635)
..++|+||||||||+|+..++..+ +..++++++..... + .......+...+........+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 468999999999999999998875 55565665543211 0 0111122222233222344578
Q ss_pred EEEecCchhhhh
Q 006700 449 LLFIDEADAFLC 460 (635)
Q Consensus 449 vL~iDEid~l~~ 460 (635)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998875
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.30 E-value=0.00047 Score=72.46 Aligned_cols=74 Identities=27% Similarity=0.295 Sum_probs=45.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------ch----------hhHHHHHHHHHHHHhhcCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~ 447 (635)
...++|+||||+|||+|+..++..+ +..+++++...... ++ ......+..+.........+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3469999999999999999998664 44555554432111 01 01122222333323334457
Q ss_pred EEEEecCchhhhh
Q 006700 448 LLLFIDEADAFLC 460 (635)
Q Consensus 448 ~vL~iDEid~l~~ 460 (635)
.+|+||++..+.+
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 8999999999874
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00089 Score=65.66 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||||+|||++++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999985
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.24 E-value=0.00065 Score=85.09 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=49.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-chhh---------------HHHHHHHHHHHHhhcCC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LGAQ---------------AVTKIHEIFDWAKKSKK 446 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-~~~~---------------~~~~l~~~f~~a~~~~~ 446 (635)
+..+++|+||||||||+||..++... |.+.++++...... +... .......+.....+...
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 45689999999999999999997654 56666665554322 1100 01122233333334455
Q ss_pred cEEEEecCchhhhhhc
Q 006700 447 GLLLFIDEADAFLCER 462 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r 462 (635)
+.+|+||++..+.+..
T Consensus 1160 ~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1160 VDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp CSEEEESCGGGCCCHH
T ss_pred CCEEEECCcccccccc
Confidence 8999999999986543
No 135
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.24 E-value=0.00062 Score=71.68 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=47.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc------ch----------hhHHHHHHHHHHHHhhcCCc
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKG 447 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~------~~----------~~~~~~l~~~f~~a~~~~~~ 447 (635)
...++|+||||+|||+||..++..+ |.++++++...... ++ ......+..++........+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 3469999999999999999998764 55666665532111 00 01122333444333333457
Q ss_pred EEEEecCchhhhh
Q 006700 448 LLLFIDEADAFLC 460 (635)
Q Consensus 448 ~vL~iDEid~l~~ 460 (635)
.+|+||.+..+.+
T Consensus 143 ~lVVIDsl~~l~~ 155 (356)
T 1u94_A 143 DVIVVDSVAALTP 155 (356)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcCHHHhcc
Confidence 8999999999874
No 136
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00018 Score=67.62 Aligned_cols=31 Identities=48% Similarity=0.845 Sum_probs=27.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|+|+||+||||+++.|++.++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4699999999999999999999998877654
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00021 Score=66.23 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=26.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.|||||||||+++.|++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 589999999999999999999999777543
No 138
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.00028 Score=79.19 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.2
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.+.+..+..+..+.. .+.++|+||||||||+++..++..+
T Consensus 188 ~~L~~~Q~~Av~~~~~-----------~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAG-----------HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TTCCHHHHHHHHHHTT-----------CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-----------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456666666655431 1369999999999999999998765
No 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.21 E-value=0.0002 Score=66.52 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..+++|.|+|||||||+++.|+..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999988754
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.20 E-value=0.0002 Score=67.54 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+|+|||||||+++.|+..+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 599999999999999999999999887654
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.17 E-value=0.00027 Score=67.73 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=28.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+..|+|+|+|||||||+++.|+..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34699999999999999999999999887654
No 142
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.17 E-value=0.0002 Score=67.00 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=26.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.++|.|||||||||+++.|+..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987764
No 143
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.14 E-value=0.00087 Score=69.59 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...++|+||||+|||+++..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3468999999999999999999875
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00027 Score=66.86 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
+..|+|.|+||+||||+++.|+..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3468999999999999999999999877665
No 145
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.12 E-value=0.00074 Score=69.44 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=46.5
Q ss_pred CCCCceEEEecCCCCChHHHHHHHHHHh-----CCCeeeccCCCccc------chh----------hHHHHH-HHHHHHH
Q 006700 384 QAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP------LGA----------QAVTKI-HEIFDWA 441 (635)
Q Consensus 384 ~~p~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~~~l~~~~~~~------~~~----------~~~~~l-~~~f~~a 441 (635)
+-|...++|+||||||||+|+..++... +..++++++..-.. ++. .....+ ..+....
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3344468999999999999988876554 44555565433211 110 111222 2222222
Q ss_pred --hhcCCcEEEEecCchhhhh
Q 006700 442 --KKSKKGLLLFIDEADAFLC 460 (635)
Q Consensus 442 --~~~~~~~vL~iDEid~l~~ 460 (635)
.....+.+|+||-+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2345689999999999975
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00025 Score=67.19 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=27.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHH-hCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK-SGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~-l~~~~~~l 418 (635)
..|+|+|+|||||||+++.|+.. +|.+++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46999999999999999999999 68776654
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.10 E-value=0.0019 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|+||+|+|||||++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999854
No 148
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00032 Score=65.27 Aligned_cols=29 Identities=31% Similarity=0.787 Sum_probs=25.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
..+.|+|||||||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35999999999999999999999987654
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.05 E-value=0.0029 Score=68.25 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc---------------------chhhHHHHHHHHHHHH
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------------------LGAQAVTKIHEIFDWA 441 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~---------------------~~~~~~~~l~~~f~~a 441 (635)
++..++|+||+|+||||++..||..+ |..+..+.+....+ .+.+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876 55555554432211 1112333344555555
Q ss_pred hhcCCcEEEEecCchhh
Q 006700 442 KKSKKGLLLFIDEADAF 458 (635)
Q Consensus 442 ~~~~~~~vL~iDEid~l 458 (635)
.... +.++|||-...+
T Consensus 179 ~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHTT-CSEEEEECCCCS
T ss_pred HhCC-CCEEEEECCCcc
Confidence 4433 679999988643
No 150
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.00087 Score=70.55 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 359999999999999999998876
No 151
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.00028 Score=65.18 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=25.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+||||+||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888887654
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.04 E-value=0.00035 Score=66.27 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=27.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|+|||||||+++.|++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999998876644
No 153
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.00036 Score=64.82 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|+|+|+|||||||+++.|+..+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 59999999999999999999999987664
No 154
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.02 E-value=0.0012 Score=65.40 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=25.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+++|+||+|+|||.++..++..++..++.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv 139 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIV 139 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 499999999999999999988876555544
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00035 Score=66.01 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
..|+|.|+|||||||+++.|+..+|.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999877654
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.00 E-value=0.00042 Score=67.47 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 34699999999999999999999999876654
No 157
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00048 Score=66.01 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
+..|+|+||||+||||+++.|+..+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3469999999999999999999999876654
No 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.99 E-value=0.00029 Score=66.65 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=28.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeeccCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~ 421 (635)
..++|.||||+||||+++.|+...+...+.+++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 4689999999999999999998876666666544
No 159
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00036 Score=65.69 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=26.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.++|.|||||||||+++.|++.+|.+++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 589999999999999999999998766543
No 160
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.0027 Score=66.37 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||||+|||+++..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999986
No 161
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00039 Score=65.21 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
..|+|+|+|||||||+++.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998876
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.93 E-value=0.00052 Score=65.70 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+..|+|+|+|||||||+++.|++.+|.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766654
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00051 Score=68.76 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=27.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
.++|+|||||||||+++.||..++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 4899999999999999999999998776554
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00047 Score=65.53 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=27.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|+||+||||+++.|++.+|.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3599999999999999999999998766543
No 165
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.91 E-value=0.00049 Score=66.62 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+||||+||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998877654
No 166
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00054 Score=63.35 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|+|+||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999877653
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00066 Score=63.33 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=26.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
...++|+||||+||||+++.|+..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3468999999999999999999988765543
No 168
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00045 Score=67.23 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|+|||||||+++.|+..+|.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999877654
No 169
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.00042 Score=65.34 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=23.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..|+|.|||||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 170
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.90 E-value=0.0004 Score=64.82 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.0
Q ss_pred ceEEEecCCCCChHHHHHHHHH-HhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR-KSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~-~l~~~~~ 416 (635)
..|+|.||||+||||+++.|+. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3589999999999999999998 5655444
No 171
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00056 Score=66.89 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=27.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
++.|+|.||||+||+|.|+.|++.+|.+.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4568899999999999999999999877653
No 172
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.90 E-value=0.00049 Score=67.08 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
..|+|.||||+||||+++.|++.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999876654
No 173
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.89 E-value=0.00055 Score=66.26 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.||||+||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998877654
No 174
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.00062 Score=66.99 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|+|||||||+++.|++.++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4799999999999999999999999776654
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.87 E-value=0.0005 Score=67.28 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|||||||||+++.|++.+|.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4699999999999999999999998776643
No 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.87 E-value=0.012 Score=69.38 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=33.7
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.||-+.....|...+... .+.+.+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 388888888887765421 12456999999999999999999853
No 177
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.86 E-value=0.00059 Score=67.80 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
++..|+|+||||+||||+++.|++.+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345799999999999999999999998776644
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.86 E-value=0.00052 Score=64.69 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.|+|||||||+++.|+..+|.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999998776643
No 179
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.86 E-value=0.00059 Score=66.17 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=26.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|+|.||||+||+|.|+.|++.+|.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999887654
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.0034 Score=61.52 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=20.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|+||||+|||+++..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999998887643
No 181
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.81 E-value=0.0048 Score=64.66 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...+.|+||||+|||+|++.++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 182
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.80 E-value=0.00075 Score=63.29 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
...+.|.|++|+||||+++.|+..+ |.+++.+++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3468899999999999999999988 888876653
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.76 E-value=0.00087 Score=64.23 Aligned_cols=30 Identities=37% Similarity=0.733 Sum_probs=25.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
...+.|.||+|+||||+++.|+..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 346999999999999999999999875443
No 184
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.73 E-value=0.0061 Score=58.97 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.5
Q ss_pred ceEEEecCCCCChHHH
Q 006700 388 RNMLFYGPPGTGKTMV 403 (635)
Q Consensus 388 ~~iLL~GppGtGKT~l 403 (635)
+++++.+|+|+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4699999999999977
No 185
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.73 E-value=0.0013 Score=66.24 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...++|.||+|+||||+++.|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3468999999999999999999876
No 186
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.00086 Score=64.96 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.||||+||||+++.|++.+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877655
No 187
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0045 Score=58.10 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 364 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.+.+..+........ ..+...++|.|++|+|||+|+..|....
T Consensus 27 ~~l~~~l~~~~~~~~~~~--~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGG--GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp HHHHHHHHHHC----------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhcCCC--CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444444443332221 1234579999999999999999998753
No 188
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.67 E-value=0.0018 Score=67.49 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=41.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCCcc------c---chhhHHHHHHHHHHHHhhcCCcEEEEecCchh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVA------P---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 457 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~~~------~---~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~ 457 (635)
.++|.||+|+||||++++|+..+.. ..+.+.+.+.. . +...........+..+...+ |.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~-p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-PDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC-CSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC-CCEEEEcCCCh
Confidence 5999999999999999999988732 23333332210 0 10001223344444554444 68999999863
No 189
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0097 Score=58.26 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+|+||+|||++|..++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999887643
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.64 E-value=0.016 Score=62.41 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
++..++|.||+|+||||++..||..+ |..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45679999999999999999999876 55554444
No 191
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.64 E-value=0.0029 Score=78.36 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=49.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccCCCccc-ch---------------hhHHHHHHHHHHHHhhcCC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-LG---------------AQAVTKIHEIFDWAKKSKK 446 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~~~~~~-~~---------------~~~~~~l~~~f~~a~~~~~ 446 (635)
+...++|+||||||||+||..++... |..+++++...... .. ......+..++........
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~ 112 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 112 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccC
Confidence 44579999999999999999987653 55666665544322 00 0112334445544434345
Q ss_pred cEEEEecCchhhhhh
Q 006700 447 GLLLFIDEADAFLCE 461 (635)
Q Consensus 447 ~~vL~iDEid~l~~~ 461 (635)
+.+|+||.+..+...
T Consensus 113 ~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 113 VDVIVVDSVAALTPK 127 (1706)
T ss_dssp CSEEEESCSTTCCCH
T ss_pred CCEEEEcchhhhccc
Confidence 789999999998764
No 192
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.61 E-value=0.0035 Score=64.79 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||||+|||+++..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.61 E-value=0.0014 Score=65.74 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=27.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH---hCCCeeeccC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK---SGLDYAMMTG 420 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~---l~~~~~~l~~ 420 (635)
..|+|+|+||+||||+++.|+.. .|.+++.+++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46999999999999999999998 6777764443
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.59 E-value=0.034 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+++++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 36999999999999876554443
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.58 E-value=0.0013 Score=62.68 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=25.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|.|.|+|||||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999986654
No 196
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0012 Score=64.57 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|+|.||||+||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766544
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0015 Score=62.64 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+||||||+++.|+..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999988
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0014 Score=63.66 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.+.|.||+||||||+++.|+..+|.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 58999999999999999999999876653
No 199
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.55 E-value=0.0063 Score=64.98 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||||||||+|++.|+-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 46899999999999999987644
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.54 E-value=0.0014 Score=61.71 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
.|.|.|+|||||||+++.|++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999988 88777653
No 201
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.54 E-value=0.0056 Score=61.77 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|+||||+|||||+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998654
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.01 Score=60.97 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..++|+||+|+||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 44578999999999999999999876
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.53 E-value=0.0013 Score=63.13 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
..|+|.|+|||||||+++.|++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 469999999999999999999987644
No 204
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.00085 Score=63.20 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.|+|.|||||||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999885
No 205
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.52 E-value=0.0024 Score=60.47 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.6
Q ss_pred EEEecCCCCChHHHHHHHHHHh---CCCeeec
Q 006700 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l---~~~~~~l 418 (635)
|.|.|++||||||+++.|++.+ |.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999998 8887654
No 206
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.51 E-value=0.0012 Score=63.07 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.|.|+|++||||||+++.|+. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 88776654
No 207
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.51 E-value=0.0014 Score=62.95 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
..|+|.|+|||||||+++.|++.++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999998753
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0013 Score=67.93 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=27.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~ 419 (635)
..++|+||||||||++++.||+.++..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 36999999999999999999999987666553
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.46 E-value=0.0015 Score=62.32 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh-CCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS-GLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l-~~~~~~l 418 (635)
..|.|.|+||+||||+++.|++.+ |.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 458999999999999999999998 4666554
No 210
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.46 E-value=0.007 Score=61.57 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.-++|.||||+|||+|++.|+..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998765
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.45 E-value=0.0088 Score=64.50 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=27.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++..++|+|+||+||||++..||..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999876 345554444
No 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.44 E-value=0.00092 Score=69.92 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=27.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.+++|+||||+||||+++.|+..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 479999999999999999999999888754
No 213
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.43 E-value=0.0018 Score=63.92 Aligned_cols=30 Identities=40% Similarity=0.571 Sum_probs=26.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
..+.|.|||||||||+++.|++.+|.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 369999999999999999999999877653
No 214
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.0072 Score=65.67 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=25.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh----CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~ 419 (635)
.-++|.|+||+|||+|+..++..+ |.++++++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 468999999999999999988764 44555544
No 215
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.40 E-value=0.0062 Score=68.75 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++++||||||||+++..+...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 59999999999999988876554
No 216
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.39 E-value=0.01 Score=58.27 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.3
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 369999999999998743
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.39 E-value=0.0022 Score=63.44 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=25.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
..+.|.||||+||||+++.|++.+|....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 46999999999999999999999887543
No 218
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.37 E-value=0.0019 Score=64.44 Aligned_cols=30 Identities=33% Similarity=0.497 Sum_probs=27.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+.|.||+|+||||+++.|+..+|.+|+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 599999999999999999999999887754
No 219
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.36 E-value=0.002 Score=61.61 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
..|+|.|+||+||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358999999999999999999998763
No 220
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.35 E-value=0.0017 Score=62.23 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.+.|.||+||||||+++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 488999999999999999988 7777653
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.35 E-value=0.018 Score=58.89 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh----CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~ 420 (635)
++..++|.||+|+||||++..||..+ |..+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34679999999999999999998765 445544443
No 222
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.0077 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...|+|+|++|+|||+|+..|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.33 E-value=0.012 Score=57.03 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997643
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.33 E-value=0.0093 Score=55.55 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.9
Q ss_pred ceEEEecCCCCChHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVARE 406 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~ 406 (635)
.-+.|+||+|+||||+++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3588999999999999994
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.33 E-value=0.0022 Score=61.23 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=26.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+.|.|++|+||||+++.|+..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 589999999999999999999999877653
No 226
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.32 E-value=0.013 Score=58.09 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=29.5
Q ss_pred ccccCCccccChHHHHHHHHHHH--------HHhcccccCCCCceEEEecCCCCChHHHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAK--------ATANTKIHQAPFRNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~--------~~~~~~~~~~p~~~iLL~GppGtGKT~lA~ 405 (635)
+...|+++-..+.+.+.+...-- ........ .+++++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ---GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT---TCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCEEEEcCCCCCchhHhH
Confidence 34567777777777766643210 00000011 1469999999999998643
No 227
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.32 E-value=0.0073 Score=57.66 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=23.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l 418 (635)
.-.+++||+|+|||+.+-.++..+ |..++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 358899999999999888887765 5554444
No 228
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.31 E-value=0.003 Score=60.35 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=24.6
Q ss_pred ceEEEecCCCCChH-HHHHHHHHHh--CCCeeecc
Q 006700 388 RNMLFYGPPGTGKT-MVAREIARKS--GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT-~lA~~lA~~l--~~~~~~l~ 419 (635)
.-.++|||.|+||| .|.+++.+.. +..++.++
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 35889999999999 8888887764 55555554
No 229
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0023 Score=61.29 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+.|+|++||||||+++.|++.+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 588999999999999999999988877654
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0041 Score=66.86 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
+.-|+|+|+||+||||+++.|+..++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568999999999999999999988765543
No 231
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.26 E-value=0.0062 Score=59.79 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.0
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 369999999999998665543
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0026 Score=61.05 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.+...++|+||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456799999999999999999999874
No 233
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0022 Score=63.77 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
..|.|.|++||||||+++.|+..+|.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 4689999999999999999999998764
No 234
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0027 Score=60.39 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=25.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
..|.|.|++||||||+++.|++. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 46899999999999999999998 766654
No 235
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.17 E-value=0.0033 Score=62.65 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
..+.|.||+||||||+++.|++.+|..++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 36889999999999999999999988765
No 236
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.16 E-value=0.028 Score=54.81 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||+.+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 469999999999998643
No 237
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.12 E-value=0.025 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|.||+|||+|+..|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999998753
No 238
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.12 E-value=0.013 Score=57.52 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 469999999999997643
No 239
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.11 E-value=0.027 Score=54.85 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.8
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++++.+|+|+|||...
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999763
No 240
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.10 E-value=0.0037 Score=66.13 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...++|.||+|+||||++++|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33469999999999999999999876
No 241
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.10 E-value=0.012 Score=60.72 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.-++|.|+||+|||+|+..+|...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998664
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.10 E-value=0.0039 Score=60.02 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
...+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999874
No 243
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.10 E-value=0.0025 Score=66.24 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|+|.||+|||||+|+..||+.++..++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 3699999999999999999999998666544
No 244
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.09 E-value=0.0084 Score=57.06 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999998643
No 245
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.07 E-value=0.016 Score=55.25 Aligned_cols=40 Identities=33% Similarity=0.388 Sum_probs=27.8
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+...+...+.+..+.. .+++++.+|+|+|||+++-.++..
T Consensus 32 ~~l~~~Q~~~i~~~~~-----------~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE-----------GKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCCHHHHHHHHHHHT-----------TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc-----------CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3445566666654432 135999999999999988777654
No 246
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.07 E-value=0.024 Score=57.92 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=30.4
Q ss_pred ccccCCccccChHHHHHHHHHH-------HHHhcccccCCCCceEEEecCCCCChHHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLA-------KATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~-------~~~~~~~~~~~p~~~iLL~GppGtGKT~lA 404 (635)
+...|+++-.++.+.+.|...- ....-......+.+++++++|+|+|||...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456777777777776665320 000000111123467999999999999763
No 247
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.07 E-value=0.009 Score=57.86 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=66.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeeccC--CCcccchhhHHHHHHHHHHHHhhcCCcEEEEecCchhh-hhhcccc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTG--GDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF-LCERNSI 465 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~--~~~~~~~~~~~~~l~~~f~~a~~~~~~~vL~iDEid~l-~~~r~~~ 465 (635)
.|-|+|..||||||+++.|+. +|.+++..+- ..+...++.....+...|....-...| .+|.- +...-
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg------~ldR~~L~~~v-- 81 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADG------SLDRARMRALI-- 81 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTS------SBCHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCC------CCcHHHHHHHH--
Confidence 588999999999999999998 8888775432 011112223333444444211100001 12210 00000
Q ss_pred cCcHHHHHHHHH---------HHHHhCCCCCCEEEEEEeCCCCCCc-HHHHccccceEecCCCCHHHHHHHHHH
Q 006700 466 HMSEAQRSALNA---------LLFRTGDQSRDIVLVLATNRPGDLD-SAITDRIDEVIEFPLPREEERFKLLKL 529 (635)
Q Consensus 466 ~~~~~~~~~L~~---------ll~~~~~~~~~viiI~ttN~~~~l~-~~l~~R~d~~i~~~~p~~~er~~Il~~ 529 (635)
..++..+..|+. +...+.....+++|+= .|-.+. ..+...||.+|.+..|....+.++...
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R 152 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR 152 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHhc
Confidence 001122222222 2222322333443332 234456 777778999999999987777766654
No 248
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.07 E-value=0.0087 Score=56.96 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997554
No 249
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.06 E-value=0.013 Score=63.55 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=24.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh----CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~ 419 (635)
.-++|.|+||+|||+|+..+|... |.++++++
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 458999999999999999988754 44555443
No 250
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.03 E-value=0.034 Score=58.53 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=16.6
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
+++++.+|+|+|||+.+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 359999999999998654433
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.03 E-value=0.014 Score=60.04 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
-|+|.||+|||||+++..||+.++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 488999999999999999999886543
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.03 E-value=0.0035 Score=60.47 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..-+.|+||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999874
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.02 E-value=0.0042 Score=63.66 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=26.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.-++|.||+|+|||+|+..||+.++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 4588999999999999999999987655443
No 254
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.02 E-value=0.0038 Score=60.32 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=26.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+.|.|++|||||++++.|+..+|.+++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 589999999999999999999999776643
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0041 Score=58.48 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=22.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998764
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.99 E-value=0.0046 Score=58.83 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
.|+|+||+|+|||||++.|......
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4999999999999999999887643
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.0043 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+...++|.|+||+||||+++.|+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999873
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0046 Score=60.80 Aligned_cols=31 Identities=32% Similarity=0.511 Sum_probs=27.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
...+.|.|++||||||+++.|+..+|.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3468999999999999999999999977654
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.97 E-value=0.017 Score=55.44 Aligned_cols=25 Identities=12% Similarity=0.503 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+-+.|.||+|+|||||++.|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998764
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.97 E-value=0.0038 Score=60.39 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|.|.|++|+||||+++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3589999999999999999998 78766544
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.96 E-value=0.01 Score=56.82 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=25.5
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l 418 (635)
+..+.|.||+|+||||+++.|+..+ +.+++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3468899999999999999999876 4444443
No 262
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.95 E-value=0.0032 Score=60.44 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=25.7
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh-CCCeeec
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS-GLDYAMM 418 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l-~~~~~~l 418 (635)
...+.|.||||+||||+++.|+..+ +..++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3468899999999999999999987 5554443
No 263
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.94 E-value=0.028 Score=56.02 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 364 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+.+...+..+....... ......|+|.|++|+|||+|+.+|...
T Consensus 16 ~~~~~~l~~~~~~~~~~---~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 16 AATQEKLIEFFGKLKQK---DMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHHHHHHHT---TCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhc---cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44445555544443321 122346999999999999999999864
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.91 E-value=0.0041 Score=59.26 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=22.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999876
No 265
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.91 E-value=0.023 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998764
No 266
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.89 E-value=0.027 Score=66.32 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..++|+||.|+||||+.+.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999854
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.87 E-value=0.0046 Score=58.28 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
.++|.||+|+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986543
No 268
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.86 E-value=0.0043 Score=59.84 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC----CCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~----~~~~~l~~ 420 (635)
...++|.|+||+||||+++.|+..++ .+++.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 34689999999999999999999774 44555543
No 269
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0038 Score=63.55 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=24.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh-CCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS-GLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l-~~~~~ 416 (635)
..|+|.|+||+||||+++.|+..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999864 55544
No 270
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.83 E-value=0.0047 Score=62.64 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=25.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
..|.|+|++||||||+++.|+ .+|.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 468999999999999999999 578766543
No 271
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.83 E-value=0.017 Score=61.27 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCCee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~~~ 416 (635)
..|+|.||+|+|||+|+..|+..++..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~ii 31 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVI 31 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEe
Confidence 45889999999999999999999875444
No 272
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.79 E-value=0.02 Score=67.25 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=54.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh-----CCCe----e----------eccCCCcccch-hhHHHHHHHHHHHHhhcCC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS-----GLDY----A----------MMTGGDVAPLG-AQAVTKIHEIFDWAKKSKK 446 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l-----~~~~----~----------~l~~~~~~~~~-~~~~~~l~~~f~~a~~~~~ 446 (635)
...++|+||.|+||||+.+.++... |..+ . .+...+....+ ......+.+....+.....
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 3468999999999999999987432 3211 0 11111100000 0111223333333333556
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHH-HHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRS-ALNALLFRTGDQSRDIVLVLATNRPGD 500 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~-~L~~ll~~~~~~~~~viiI~ttN~~~~ 500 (635)
|.+|+|||...- .+..... +...++..+... .++.+|++|...+.
T Consensus 753 p~LlLLDEP~~G--------lD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~el 798 (918)
T 3thx_B 753 QSLVILDELGRG--------TSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYPPV 798 (918)
T ss_dssp TCEEEEESTTTT--------SCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGGG
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHHH
Confidence 889999999642 2333333 333555554221 24567778877543
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.76 E-value=0.0059 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998863
No 274
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.76 E-value=0.028 Score=62.14 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..|+|+|.||+||||+++.|++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999884
No 275
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.75 E-value=0.036 Score=57.82 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.5
Q ss_pred ceEEEecCCCCChHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREI 407 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~l 407 (635)
+++++.+|+|+|||+.+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999865443
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.73 E-value=0.0049 Score=59.17 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC--CCeee
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG--LDYAM 417 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~--~~~~~ 417 (635)
..+.|.||+|+||||+++.|+..++ ..|+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4588999999999999999999887 44443
No 277
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.72 E-value=0.027 Score=60.59 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~ 409 (635)
...+-.++.|+||||||+++..++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3445688999999999999988764
No 278
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.72 E-value=0.027 Score=58.25 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++..++|+||+|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999876
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.71 E-value=0.028 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999865
No 280
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.70 E-value=0.0053 Score=63.89 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|+|.||+|+|||+++..|+..++..++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis 37 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIIS 37 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceec
Confidence 58999999999999999999998754433
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.69 E-value=0.037 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 282
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.67 E-value=0.014 Score=64.57 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=29.8
Q ss_pred cEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006700 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 501 (635)
Q Consensus 447 ~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~~l 501 (635)
+.+|+|||+-.+.+. .+.+...+..+..++..+.. .++.+|+++...+.+
T Consensus 139 ~~~lilDe~t~~~~~---~~lD~~~~~~l~~ll~~l~~--~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQ---YDASSVVRRELFRLVARLKQ--IGATTVMTTERIEEY 188 (525)
T ss_dssp CSEEEEECSTTTSTT---TCCHHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSS
T ss_pred CCEEEECCHHHHHHh---cCCHHHHHHHHHHHHHHHHH--CCCEEEEEecCCCCc
Confidence 569999999876543 11234455566666666643 244566677655543
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.66 E-value=0.0058 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998764
No 284
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.66 E-value=0.02 Score=55.40 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=23.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
-.+++||.|+|||+.+..++..+ |..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46789999999999888877655 55555543
No 285
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.66 E-value=0.03 Score=60.00 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=34.4
Q ss_pred ccCCccccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 355 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..++++-..+.....|..++ . .+...++|.||+|+||||+.++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---~------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---K------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---T------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHH---H------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34566666665555555541 1 1223589999999999999999999874
No 286
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0059 Score=58.43 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.||+|+||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999998763
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.63 E-value=0.033 Score=61.15 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
++..|+|+|+||+||||++..|+..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45689999999999999999999776 555555554
No 288
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.62 E-value=0.0069 Score=58.22 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=27.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|.|.||+|||||++++.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999874
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.61 E-value=0.023 Score=57.08 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||++.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999998765
No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.61 E-value=0.026 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.60 E-value=0.036 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 292
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.56 E-value=0.057 Score=56.38 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=16.9
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
+++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 469999999999998764443
No 293
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.54 E-value=0.02 Score=60.58 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999875
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.52 E-value=0.047 Score=57.33 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+-|.||+|+|||||.++|+...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 358899999999999999999765
No 295
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.48 E-value=0.037 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..|...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 296
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.47 E-value=0.074 Score=51.10 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.1
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999998643
No 297
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.46 E-value=0.017 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=18.9
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.++|.|++|+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 599999999999999998853
No 298
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.45 E-value=0.039 Score=60.14 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...++|.||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34578899999999999999999876
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.44 E-value=0.022 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999764
No 300
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.41 E-value=0.038 Score=52.05 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...|+|.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999764
No 301
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.41 E-value=0.027 Score=60.57 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++|+.||+|+|||+++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46999999999999875
No 302
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.37 E-value=0.016 Score=65.73 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=27.3
Q ss_pred ccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 361 ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
-++++.++++..++. ..+ -.||+||||||||+++-.+...
T Consensus 189 ~LN~~Q~~AV~~al~--------~~~--~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS--------QKE--LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp TCCHHHHHHHHHHHH--------CSS--EEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--------CCC--ceEEECCCCCCHHHHHHHHHHH
Confidence 467888888776543 111 3899999999999765554433
No 303
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.37 E-value=0.018 Score=58.67 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
++..+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344688999999999999999999875
No 304
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.031 Score=55.75 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.3
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 359999999999998654
No 305
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.35 E-value=0.02 Score=59.54 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeec
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l 418 (635)
.-++|.|+||+|||+|+..+|... |.++.++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 459999999999999999998764 4454443
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.33 E-value=0.036 Score=59.74 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh----CCCeeeccCCC
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGD 422 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~~~~ 422 (635)
.+++.++|+|++|+||||++-.||..+ |..+..+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345689999999999999999998776 56666665543
No 307
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.05 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
-.|+|.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 308
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.31 E-value=0.013 Score=65.82 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
.+..|+|.|+||+||||+++.|++.+ |.+++.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 34569999999999999999999999 888877753
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.30 E-value=0.078 Score=55.43 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...|.|+|+||+||||++..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998876
No 310
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.29 E-value=0.033 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 311
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.23 E-value=0.0091 Score=57.21 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..++|.||||+|||++|..|++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998764
No 312
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.22 E-value=0.12 Score=54.36 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.6
Q ss_pred ceEEEecCCCCChHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVARE 406 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~ 406 (635)
+++++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 3599999999999987433
No 313
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.22 E-value=0.069 Score=53.38 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 364 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+.+...+..+....... +.....|+|.|++|+|||+|+..|...
T Consensus 19 ~~~~~~l~~~~~~~~~~---~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 19 PATQTKLLELLGNLKQE---DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHHHHHHT---TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhc---CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 44556665555544321 222346999999999999999999754
No 314
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.22 E-value=0.04 Score=50.25 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999998753
No 315
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.21 E-value=0.038 Score=59.80 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
.-++|.|+||+|||+|+..+|... |.++++++
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 459999999999999999988765 44554443
No 316
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.20 E-value=0.036 Score=60.38 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=23.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
..|+|+|.||+||||+++.|+..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46999999999999999999998753
No 317
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.17 E-value=0.045 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=18.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+++++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 36999999999999886554433
No 318
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.16 E-value=0.056 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999865
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.16 E-value=0.043 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=19.0
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.++|.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 320
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.15 E-value=0.013 Score=57.61 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=26.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
.+-|.||||+||||+++.|++.++.+++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477999999999999999999998887654
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.13 E-value=0.035 Score=56.70 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.4
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh---CCCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~~ 420 (635)
+..++|.|++|+||||++..||..+ |..+..+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4468889999999999999999876 555554443
No 322
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.13 E-value=0.08 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+.|+|.|+||||||+|...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999764
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.077 Score=61.49 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=33.1
Q ss_pred ccccCCccccChHHHHHHHHHHHH--------HhcccccCCCCceEEEecCCCCChHHHHHHHHHH
Q 006700 353 AIKNNGDIILHPSLQRRIQHLAKA--------TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 353 ~~~~~~~vig~~~~~~~l~~l~~~--------~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+...|.++..++.+.+.+...-.. +..... ....+++.||+|+|||+++..+...
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455677777777776666432100 000000 1135999999999999977666443
No 324
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.12 E-value=0.061 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-+.|+||+|+|||+|.++|+-.++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999965543
No 325
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.12 E-value=0.06 Score=62.48 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++|+||.|+||||+.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999999865
No 326
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.10 E-value=0.01 Score=65.48 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=40.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC--CeeeccCCC-ccc-----c--h-----hhHHHHHHHHHHHHhhcCCcEEEEec
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGD-VAP-----L--G-----AQAVTKIHEIFDWAKKSKKGLLLFID 453 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~--~~~~l~~~~-~~~-----~--~-----~~~~~~l~~~f~~a~~~~~~~vL~iD 453 (635)
+++|.||+|+||||++++|+..+.. ..+.+.+.. +.. + . +.....+...+..+.+.. |.+++++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~-PD~iivg 340 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQR-PDYIIVG 340 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGC-CSEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccC-CCeEEeC
Confidence 5999999999999999999988742 233333322 110 0 0 000112333444444555 6788999
Q ss_pred Cch
Q 006700 454 EAD 456 (635)
Q Consensus 454 Eid 456 (635)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 327
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.06 E-value=0.074 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|.|.|+||+|||+|...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 328
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.03 E-value=0.013 Score=56.93 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999876
No 329
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.03 E-value=0.03 Score=55.25 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.0
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999997543
No 330
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.01 E-value=0.077 Score=57.55 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=28.7
Q ss_pred cccCCccccChHHHHHHHHHH--------HHHhcccccCCCCceEEEecCCCCChHHHH
Q 006700 354 IKNNGDIILHPSLQRRIQHLA--------KATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 354 ~~~~~~vig~~~~~~~l~~l~--------~~~~~~~~~~~p~~~iLL~GppGtGKT~lA 404 (635)
...|.++-.++.+.+.|...- ........ ..+.+++|++||+|+|||...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il-~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCcEEEEcCCCCchhHHH
Confidence 345666667777666654310 00000000 113467999999999999874
No 331
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.98 E-value=0.1 Score=56.03 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred cccccCCccccChHHHHHHHHHH--------HHHhcccccCCCCceEEEecCCCCChHHH
Q 006700 352 EAIKNNGDIILHPSLQRRIQHLA--------KATANTKIHQAPFRNMLFYGPPGTGKTMV 403 (635)
Q Consensus 352 ~~~~~~~~vig~~~~~~~l~~l~--------~~~~~~~~~~~p~~~iLL~GppGtGKT~l 403 (635)
.|...|+++-..+.+.+.|...- ........ ..+++++.+|+|+|||..
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~---~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS---SGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH---TTCCEEEECCTTSSHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh---cCCCEEEECCCCCCchHH
Confidence 34556777777777776664320 00000000 124699999999999984
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.98 E-value=0.056 Score=49.91 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.|+|.|++|+|||+|+..|....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 333
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.98 E-value=0.02 Score=53.97 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhCCCeeeccCC
Q 006700 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421 (635)
Q Consensus 390 iLL~GppGtGKT~lA~~lA~~l~~~~~~l~~~ 421 (635)
+|++|++|+|||++|..++.. +.+.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 799999999999999999987 7776666543
No 334
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.12 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.|+|.|++|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 335
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.92 E-value=0.046 Score=62.82 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=16.0
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
.+++++||+|+|||+.+-
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 479999999999998873
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.90 E-value=0.015 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.||+|+||||+++.|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999999874
No 337
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.89 E-value=0.0061 Score=58.44 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=22.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-|.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 338
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.89 E-value=0.044 Score=60.15 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh----CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l----~~~~~~l~ 419 (635)
.-++|.|+||+|||+|+..+|... |.++++++
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 468999999999999999998765 34555443
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.88 E-value=0.082 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998765
No 340
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.05 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
+++++.+|+|+|||.++-..+-..+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~ 58 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMK 58 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCC
Confidence 359999999999998776655544433
No 341
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.88 E-value=0.016 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||.|+|||||++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999987
No 342
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.86 E-value=0.071 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=16.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
-.+++||.|+|||+.+-.++..
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4788999999999766555544
No 343
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.85 E-value=0.1 Score=58.66 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.+.|.||+|+|||||.++|+...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998754
No 344
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.85 E-value=0.017 Score=56.68 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.-|.|.||||+||||+++.|+..++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999986
No 345
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.82 E-value=0.017 Score=56.36 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+..-+.|.||+|+|||||.+.|+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344688999999999999999998764
No 346
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.81 E-value=0.051 Score=62.31 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=16.6
Q ss_pred ceEEEecCCCCChHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVARE 406 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~ 406 (635)
.+++++||+|+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4799999999999998843
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.80 E-value=0.03 Score=57.58 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=23.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHhC
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+...+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344688999999999999999998773
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.77 E-value=0.016 Score=57.17 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
..+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 358899999999999999999988754
No 349
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.77 E-value=0.038 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..+.|.||+|+||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999876
No 350
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.77 E-value=0.037 Score=57.36 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++..+.|.||+|+||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999876
No 351
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.75 E-value=0.016 Score=56.66 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCeee
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~~~ 417 (635)
.|.|.|++|||||++++.||+.+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999998864
No 352
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.74 E-value=0.19 Score=46.65 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++|.|++|+|||+|+..|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999753
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.74 E-value=0.033 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|.|++|+|||+|...+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998754
No 354
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.74 E-value=0.024 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999873
No 355
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.73 E-value=0.076 Score=61.24 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|+||+|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35889999999999999999864
No 356
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.72 E-value=0.036 Score=60.03 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++|+||+|||||+|+..|+...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887764
No 357
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.72 E-value=0.077 Score=51.90 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.7
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 35999999999999864
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.67 E-value=0.02 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..+.|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34578899999999999999999876
No 359
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.63 E-value=0.062 Score=57.03 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.7
Q ss_pred eEEEecCCCCChHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREI 407 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~l 407 (635)
++++.+|+|+|||++.-..
T Consensus 38 ~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CEECCSCSSSSHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 6999999999999854443
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.62 E-value=0.056 Score=59.73 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|.||||+|||+|++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998764
No 361
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.62 E-value=0.016 Score=55.01 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.6
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..++|.|++|+|||+|+..+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999864
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.62 E-value=0.045 Score=56.53 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+.-+.|.||+||||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999999875
No 363
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.58 E-value=0.025 Score=64.89 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.9
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
.++++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 469999999999999874
No 364
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.57 E-value=0.027 Score=59.23 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=22.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.++|.||+|+||||++++|+..+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 599999999999999999998874
No 365
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.56 E-value=0.045 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..++|.||+|+||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44578999999999999999999876
No 366
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.56 E-value=0.076 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.55 E-value=0.011 Score=60.14 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=23.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC---CCeeeccCCCc
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDV 423 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~---~~~~~l~~~~~ 423 (635)
-|.|.||+|+||||+++.|+..++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 488999999999999999999776 33444444443
No 368
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.55 E-value=0.071 Score=56.21 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|.||+|||||++++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 469999999999999999998865
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.47 E-value=0.034 Score=51.90 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh---CCCeeecc
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l---~~~~~~l~ 419 (635)
+.+.|.|++|+||||++..|+..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 458899999999999999999876 45554444
No 370
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.069 Score=64.31 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.1
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
+++|++||+|+|||+++-..+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 469999999999998765443
No 371
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.45 E-value=0.022 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+...+.|+||+|+|||||++.|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344568899999999999999999987
No 372
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.45 E-value=0.17 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 373
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.44 E-value=0.014 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=15.4
Q ss_pred ceEEEecCCCCChHHHHHHHH-HHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIA-RKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA-~~l 411 (635)
..+.|.||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 358899999999999999999 765
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.42 E-value=0.083 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...|+|.|++|+|||+|...|...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999754
No 375
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.33 E-value=0.063 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.|+|.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999998887654
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.28 E-value=0.13 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..++|.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.19 E-value=0.087 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++..++|.||+|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999999876
No 378
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.17 E-value=0.076 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
-.|+|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 379
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.16 E-value=0.15 Score=60.62 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.2
Q ss_pred ceEEEecCCCCChHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA 408 (635)
..++|+||.|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999984
No 380
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.14 E-value=0.17 Score=53.05 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++++.+|+|+|||+.+
T Consensus 65 ~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCchHHHHH
Confidence 57999999999999875
No 381
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.14 E-value=0.19 Score=52.96 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.6
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++++.+|+|+|||+..
T Consensus 53 ~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEcCCCCHHHHHH
Confidence 46999999999999743
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.12 E-value=0.028 Score=57.64 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999875
No 383
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.05 Score=50.63 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.1
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..|+|.|++|+|||+|+..+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999984
No 384
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.06 E-value=0.12 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|.|.|+||+|||+|..+|...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999764
No 385
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.03 E-value=0.13 Score=53.75 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.|.|.|++|+|||+|..+|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999999987
No 386
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.01 E-value=0.05 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-|.|.||+|+||||+++.|++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999987
No 387
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.00 E-value=0.089 Score=54.89 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.1
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 359999999999998743
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.98 E-value=0.057 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
-|.|.||+|+||||+++.|+..++
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999873
No 389
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.92 E-value=0.028 Score=62.77 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC----CCeeeccC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTG 420 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~----~~~~~l~~ 420 (635)
+..|+|.|+||+||||+++.|++.++ .+++.+++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 34689999999999999999999986 66666653
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.88 E-value=0.038 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.-+.|.||+|+||||++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998875
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.85 E-value=0.32 Score=55.05 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=27.7
Q ss_pred CcEEEEecCchhhhhhcccccCcHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006700 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 499 (635)
Q Consensus 446 ~~~vL~iDEid~l~~~r~~~~~~~~~~~~L~~ll~~~~~~~~~viiI~ttN~~~ 499 (635)
...+|+|||++.+ +......+..++..+.......+|+++...+.
T Consensus 318 ~l~~lVlDEAH~l---------~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 318 AYDIIICDECHST---------DSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp SCSEEEETTTTCC---------SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred cccEEEEccchhc---------CccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 3678999999755 23344456666666665555556666554433
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.85 E-value=0.15 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...+.|.|+||+|||||...|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999764
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.84 E-value=0.038 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
-.+|+||+|+|||+++++|+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999987753
No 394
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.83 E-value=0.28 Score=51.57 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.2
Q ss_pred ceEEEecCCCCChHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREI 407 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~l 407 (635)
+++++.+|+|+|||..+-..
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHH
Confidence 46999999999999765543
No 395
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.83 E-value=0.16 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..|+|.|++|+|||+|+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999987543
No 396
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.72 E-value=0.17 Score=51.66 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHH
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
+|+.-|.|.|+||+|||||...|...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456889999999999999998753
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.72 E-value=0.032 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++||.|+||+|||++|..|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57999999999999999999874
No 398
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.71 E-value=0.15 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..|+|.|++|+|||+|+..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998653
No 399
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.71 E-value=0.28 Score=51.14 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...++|.|+||+|||+|...|+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999764
No 400
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.70 E-value=0.15 Score=57.00 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+|+||||+++.|+..+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468899999999999999998865
No 401
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.69 E-value=0.4 Score=50.22 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.+.+.|.|+||+|||+|...|+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 445889999999999999999754
No 402
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.69 E-value=0.25 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+...+.|.||+|+||||+++.|+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44568999999999999999998865
No 403
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.66 E-value=0.016 Score=57.75 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=23.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHHhC
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+.-|+|.|++|+||||+++.|++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999983
No 404
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.60 E-value=0.21 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..|...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998753
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.58 E-value=0.14 Score=48.13 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.6
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 406
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.57 E-value=0.036 Score=54.43 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..|.|.|++|+||||+++.|++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999984
No 407
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.55 E-value=0.053 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
-.|+|.|++|+|||+|+..+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999853
No 408
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.13 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+-|.||+|+|||||+++|+..+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999865
No 409
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.47 E-value=0.036 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999753
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.46 E-value=0.033 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.+.|.||+|+|||||++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.46 E-value=0.11 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||||+|||||.+.|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999765
No 412
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.44 E-value=0.049 Score=59.76 Aligned_cols=26 Identities=0% Similarity=-0.092 Sum_probs=24.1
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
..|+|.|++||||||++++|++.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999999975
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.40 E-value=0.08 Score=51.39 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhCCCe
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~~~~ 415 (635)
-|.|.|++|+||||+++.|++.++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 588999999999999999999998643
No 414
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.39 E-value=0.16 Score=48.53 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...|+|.|++|+|||+|+..|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347999999999999999998764
No 415
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.38 E-value=0.038 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999998755
No 416
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.36 E-value=0.14 Score=55.43 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.7
Q ss_pred ceEEEecCCCCChHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~ 409 (635)
..|+|.|.||+|||+|...|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4699999999999999999864
No 417
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.35 E-value=0.16 Score=55.63 Aligned_cols=18 Identities=44% Similarity=0.505 Sum_probs=15.6
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+++|+.+|+|+|||.++-
T Consensus 159 ~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCEEEECCSSTTSHHHHH
T ss_pred CCEEEECCCCccHHHHHH
Confidence 579999999999998743
No 418
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.31 E-value=0.09 Score=56.84 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=33.5
Q ss_pred cccChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHhCCCeeec
Q 006700 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (635)
Q Consensus 360 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l~~~~~~l 418 (635)
+-..+...+.+..+... +++|++||+|+|||.++-.++..++...+.+
T Consensus 92 ~~l~~~Q~~ai~~i~~~-----------~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl 139 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVD-----------KRGCIVLPTGSGKTHVAMAAINELSTPTLIV 139 (472)
T ss_dssp CCBCHHHHHHHHHHTTT-----------TEEEEECCTTSCHHHHHHHHHHHHCSCEEEE
T ss_pred CCcCHHHHHHHHHHHhc-----------CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44567777777654321 2499999999999999988877765544333
No 419
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.30 E-value=0.04 Score=55.42 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 420
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.28 E-value=0.046 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999865
No 421
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.25 E-value=0.14 Score=55.26 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=12.8
Q ss_pred eEEEecCCCCChHH
Q 006700 389 NMLFYGPPGTGKTM 402 (635)
Q Consensus 389 ~iLL~GppGtGKT~ 402 (635)
.+++.||+|+|||+
T Consensus 21 ~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 21 LTIMDLHPGAGKTK 34 (451)
T ss_dssp EEEECCCTTSSCCT
T ss_pred eEEEECCCCCCHhh
Confidence 46999999999998
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.22 E-value=0.13 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.0
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999977653
No 423
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.20 E-value=0.083 Score=56.95 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.2
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++|+.||+|+|||+.+
T Consensus 9 ~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CCEEEEcCCCCCHHHHH
Confidence 57999999999999874
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.13 E-value=0.027 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhC
Q 006700 389 NMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
.+.|.||+|+||||+++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998873
No 425
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.13 E-value=0.045 Score=61.86 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.+....++..+.. . +.++|.||||||||+++..+...+
T Consensus 181 ln~~Q~~av~~~l~---------~--~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQ---------R--PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CCHHHHHHHHHHHT---------C--SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc---------C--CCeEEECCCCCCHHHHHHHHHHHH
Confidence 46677777665431 1 248999999999999887776553
No 426
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.12 E-value=0.049 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.+.|.||+|+|||+|.+.|+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 427
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.12 E-value=0.04 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998765
No 428
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.12 E-value=0.044 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 429
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.10 E-value=0.11 Score=56.24 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.4
Q ss_pred ceEEEecCCCCChHHH
Q 006700 388 RNMLFYGPPGTGKTMV 403 (635)
Q Consensus 388 ~~iLL~GppGtGKT~l 403 (635)
+++++.||+|+|||+.
T Consensus 22 ~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRK 37 (459)
T ss_dssp CEEEECCCTTSCTTTT
T ss_pred CcEEEECCCCCCHHHH
Confidence 4699999999999986
No 430
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.03 E-value=0.097 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.2
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.|+|.|++|+|||+|+..|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999864
No 431
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.2 Score=59.81 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=23.5
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHH
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVARE 406 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~ 406 (635)
..+...+.+..+.. .+++|+.+|+|+|||.++..
T Consensus 87 L~~~Q~eai~~l~~-----------g~~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 87 LDPFQDTAISCIDR-----------GESVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp CCHHHHHHHHHHHH-----------TCEEEEECCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-----------CCCEEEECCCCCChHHHHHH
Confidence 45556666655422 13699999999999998743
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.00 E-value=0.28 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.|+|.|+||+|||+|...|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 599999999999999999975
No 433
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.98 E-value=0.13 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6999999999999999999754
No 434
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.95 E-value=0.085 Score=62.85 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.1
Q ss_pred ceEEEecCCCCChHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREI 407 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~l 407 (635)
+++|+.||+|+|||+++...
T Consensus 55 ~~vlv~apTGsGKTlv~~~~ 74 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYA 74 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHH
Confidence 36999999999999865433
No 435
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.93 E-value=0.049 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 436
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.93 E-value=0.043 Score=57.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-+.|.||+|||||||.++|+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999865
No 437
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.83 E-value=0.052 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.81 E-value=0.044 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.80 E-value=0.28 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 385 ~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++...+.|+||+|+||||+++.|...+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 344578999999999999999999876
No 440
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.77 E-value=0.18 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
....+.|.|+||+||||++..|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 441
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.76 E-value=0.061 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=20.3
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 442
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.71 E-value=0.091 Score=50.86 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHH-HHHHHHHHh--CCCeeec
Q 006700 389 NMLFYGPPGTGKTM-VAREIARKS--GLDYAMM 418 (635)
Q Consensus 389 ~iLL~GppGtGKT~-lA~~lA~~l--~~~~~~l 418 (635)
-.+++||.|+|||| +.+.+-+.. +..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 47899999999999 555554333 4444433
No 443
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.67 E-value=0.55 Score=52.22 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.7
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++|+.+|+|+|||..+
T Consensus 61 ~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAF 77 (579)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred CeEEEEcCCCcHHHHHH
Confidence 46999999999999853
No 444
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.67 E-value=0.42 Score=47.89 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCceEEEecCCCCChHHHHHHHHHH
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
....|+|.|.||+|||+|..+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999753
No 445
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.63 E-value=0.053 Score=56.89 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~~ 414 (635)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999987543
No 446
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.63 E-value=0.054 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999765
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.62 E-value=0.067 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..+.|.||+|+|||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999975
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.58 E-value=0.048 Score=55.03 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||++.|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998765
No 449
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.57 E-value=0.054 Score=56.68 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|||||||.+.|+...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999865
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.56 E-value=0.069 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.-|.|.|++|+||||+++.|+..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999887
No 451
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.55 E-value=0.045 Score=60.82 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
..+.|.|++||||||+++.|+..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4689999999999999999999884
No 452
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.53 E-value=0.067 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..+.|.||+|+|||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999985
No 453
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.52 E-value=0.7 Score=52.49 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.3
Q ss_pred ceEEEecCCCCChHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREI 407 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~l 407 (635)
..+.|.||+|+|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 45889999999999999754
No 454
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.50 E-value=0.5 Score=52.14 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.8
Q ss_pred ceEEEecCCCCChHHHH
Q 006700 388 RNMLFYGPPGTGKTMVA 404 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA 404 (635)
+++|+.+|+|+|||..+
T Consensus 112 ~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAF 128 (563)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCccHHH
Confidence 47999999999999853
No 455
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.49 E-value=0.057 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 456
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.47 E-value=0.05 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.46 E-value=0.062 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 358899999999999999999765
No 458
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.46 E-value=0.061 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999998765
No 459
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.43 E-value=0.071 Score=48.10 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++|.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999997643
No 460
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.41 E-value=0.073 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.++|.|++|+|||+|+..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998653
No 461
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.40 E-value=0.072 Score=55.93 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999865
No 462
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.40 E-value=0.08 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhCC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~~ 413 (635)
.-|.|.|++|+||||+++.|++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45888999999999999999998754
No 463
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.40 E-value=0.055 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.4
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 464
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.40 E-value=0.062 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999875
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.40 E-value=0.06 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 466
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.39 E-value=0.063 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||++.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 467
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.39 E-value=0.06 Score=56.75 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|||||||.+.|+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999865
No 468
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.36 E-value=0.074 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..++|.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.36 E-value=0.23 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHHh
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
...+-|+||+|+||||+++.|.+.+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3468899999999999999999876
No 470
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.34 E-value=0.073 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|||||||.+.|+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357899999999999999999865
No 471
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.32 E-value=0.43 Score=47.82 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|.|.|+||||||+|...|...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.30 E-value=0.076 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred ceEEEecCCCCChHHHHHHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 473
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.29 E-value=0.067 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 474
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.28 E-value=0.12 Score=50.97 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCceEEEecCCCCChHHHHHHHHHHh--CCCeeecc
Q 006700 386 PFRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMT 419 (635)
Q Consensus 386 p~~~iLL~GppGtGKT~lA~~lA~~l--~~~~~~l~ 419 (635)
....+++.|.+|+||||++..|+..+ |..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999999776 44555444
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.28 E-value=0.072 Score=48.58 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~ 409 (635)
.+.|.|++|+|||+|...++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.26 E-value=0.065 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999998765
No 477
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.25 E-value=0.063 Score=56.62 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999865
No 478
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.18 E-value=0.08 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999865
No 479
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.17 E-value=0.65 Score=56.15 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHH
Q 006700 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408 (635)
Q Consensus 363 ~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA 408 (635)
.+...+.+..+......+ .+.++|++||+|+|||.++-..+
T Consensus 605 t~~Q~~ai~~il~~~~~g-----~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQP-----LAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSS-----SCCEEEEECCCCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-----CcCcEEEECCCCCCHHHHHHHHH
Confidence 566666666665544322 23479999999999998865443
No 480
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.17 E-value=0.058 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999765
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.15 E-value=0.073 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-|.|.|++|+||||.++.|++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999987
No 482
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.14 E-value=0.075 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999754
No 483
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.14 E-value=0.07 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999998765
No 484
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.12 E-value=0.35 Score=49.19 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.+.|.|.||+|||+|...|...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 485
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.05 E-value=0.9 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=17.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
++++.+|+|+|||..+-..+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHH
Confidence 5999999999999887655543
No 486
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.03 E-value=0.084 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHhC
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l~ 412 (635)
+.++|.|++|+|||+++..|+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998764
No 487
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.02 E-value=0.086 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 488
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.083 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 489
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.96 E-value=0.077 Score=61.61 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=27.4
Q ss_pred cChHHHHHHHHHHHHHhcccccCCCCceEEEecCCCCChHHHHHHHHHHh
Q 006700 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 362 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
+.+....++..++. . +.++|.||||||||+++..++..+
T Consensus 357 Ln~~Q~~Av~~~l~---------~--~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQ---------R--PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CCHHHHHHHHHHHT---------S--SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcc---------C--CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46666666665432 1 248999999999999887776553
No 490
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.95 E-value=0.41 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.2
Q ss_pred CceEEEecCCCCChHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIAR 409 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~ 409 (635)
...|.|+|.||+|||+|..+|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999864
No 491
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.95 E-value=0.088 Score=47.47 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.++|.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.92 E-value=0.1 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=4.5
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 006700 389 NMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~ 410 (635)
.|+|.|++|+|||+|+..|...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988765
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.88 E-value=0.075 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
.+.|.||+|+|||||.+.|+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 494
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.87 E-value=0.065 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|||||||.+.|+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 358899999999999999999865
No 495
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.86 E-value=0.095 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
-.+|+||.|+|||++..+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998665
No 496
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.86 E-value=0.33 Score=51.58 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=19.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 006700 389 NMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 389 ~iLL~GppGtGKT~lA~~lA~~l 411 (635)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 59999999999999887776554
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.86 E-value=0.14 Score=54.70 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 006700 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQ 591 (635)
Q Consensus 562 ~~~~~~l~~la~~t~G~sgrdI~~L~~~~q 591 (635)
+++++.+..||..+ |.+..++..++.+..
T Consensus 321 Gld~~sl~~~a~~~-~~~~~~~~~~~~s~~ 349 (413)
T 1tq4_A 321 GVDETSLQRLARDW-EIEVDQVEAMIKSPA 349 (413)
T ss_dssp TCSHHHHHHHHSSS-SSCHHHHHHTCSHHH
T ss_pred CCCHHHHHHHHHHh-CCCHHHHHHHHhChh
Confidence 68999999999765 889999988876553
No 498
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.86 E-value=0.1 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.8
Q ss_pred CceEEEecCCCCChHHHHHHHHHH
Q 006700 387 FRNMLFYGPPGTGKTMVAREIARK 410 (635)
Q Consensus 387 ~~~iLL~GppGtGKT~lA~~lA~~ 410 (635)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999753
No 499
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.83 E-value=0.11 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred ceEEEecCCCCChHHHHHHHHHHh
Q 006700 388 RNMLFYGPPGTGKTMVAREIARKS 411 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~~lA~~l 411 (635)
..+.|.||+|+|||||++.|+...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 359999999999999999998865
No 500
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=91.82 E-value=0.047 Score=62.15 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.4
Q ss_pred ceEEEecCCCCChHHHHH
Q 006700 388 RNMLFYGPPGTGKTMVAR 405 (635)
Q Consensus 388 ~~iLL~GppGtGKT~lA~ 405 (635)
+.+|++||+|+|||+.+-
T Consensus 156 k~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 469999999999998554
Done!