Query 006701
Match_columns 634
No_of_seqs 453 out of 4055
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 13:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 1.9E-46 4.2E-51 394.4 47.8 469 24-588 397-883 (890)
2 PRK11091 aerobic respiration c 100.0 7.9E-40 1.7E-44 376.7 45.1 265 338-630 277-543 (779)
3 PRK10490 sensor protein KdpD; 100.0 4.3E-38 9.4E-43 360.7 51.5 387 124-585 493-883 (895)
4 PRK10618 phosphotransfer inter 100.0 9.7E-40 2.1E-44 370.2 35.9 275 326-629 432-706 (894)
5 PRK13837 two-component VirA-li 100.0 1E-36 2.2E-41 350.9 53.0 447 128-629 261-714 (828)
6 PRK10841 hybrid sensory kinase 100.0 8.6E-37 1.9E-41 351.6 35.8 241 325-586 428-669 (924)
7 TIGR02956 TMAO_torS TMAO reduc 100.0 3.4E-36 7.3E-41 355.8 38.7 270 331-630 451-720 (968)
8 TIGR02916 PEP_his_kin putative 100.0 4E-34 8.6E-39 322.8 51.1 366 146-583 307-679 (679)
9 COG5002 VicK Signal transducti 100.0 3.5E-37 7.6E-42 292.9 18.7 227 341-588 222-452 (459)
10 PRK15347 two component system 100.0 1.9E-35 4.2E-40 347.7 37.4 241 323-587 377-617 (921)
11 PRK11466 hybrid sensory histid 100.0 2E-35 4.3E-40 346.9 36.4 276 321-629 421-698 (914)
12 PRK11107 hybrid sensory histid 100.0 8.5E-35 1.9E-39 342.3 40.1 282 323-630 272-554 (919)
13 PRK09303 adaptive-response sen 100.0 2.8E-34 6.2E-39 301.6 32.9 241 323-585 130-378 (380)
14 COG4251 Bacteriophytochrome (l 100.0 3.7E-32 7.9E-37 277.5 34.9 390 143-588 327-745 (750)
15 PRK09959 hybrid sensory histid 100.0 5.8E-33 1.3E-37 334.3 33.6 275 332-629 700-975 (1197)
16 PRK11006 phoR phosphate regulo 100.0 1.3E-29 2.8E-34 272.0 41.4 219 344-586 204-425 (430)
17 COG4191 Signal transduction hi 100.0 1.8E-30 3.9E-35 266.2 30.1 213 343-584 383-601 (603)
18 PRK10604 sensor protein RstB; 100.0 1.6E-29 3.5E-34 270.8 29.9 232 325-586 193-425 (433)
19 PRK10364 sensor protein ZraS; 100.0 2E-27 4.3E-32 257.1 45.7 214 342-586 235-450 (457)
20 TIGR02938 nifL_nitrog nitrogen 100.0 2.3E-29 4.9E-34 275.4 29.6 218 342-584 274-494 (494)
21 COG3852 NtrB Signal transducti 100.0 2.5E-29 5.4E-34 236.4 23.4 222 342-586 130-356 (363)
22 PRK10815 sensor protein PhoQ; 100.0 9.1E-29 2E-33 267.3 30.2 230 328-585 250-479 (485)
23 PRK10755 sensor protein BasS/P 100.0 1.5E-27 3.2E-32 249.7 28.2 212 344-585 137-351 (356)
24 PRK10549 signal transduction h 100.0 3E-27 6.6E-32 256.8 30.1 241 322-586 218-460 (466)
25 TIGR03785 marine_sort_HK prote 100.0 2.8E-27 6E-32 265.7 30.5 238 322-583 463-703 (703)
26 PRK13557 histidine kinase; Pro 100.0 2E-26 4.4E-31 255.2 31.2 265 343-629 162-432 (540)
27 TIGR01386 cztS_silS_copS heavy 100.0 1.9E-26 4.1E-31 250.0 28.8 237 321-583 218-457 (457)
28 COG5000 NtrY Signal transducti 100.0 2.9E-25 6.3E-30 226.9 35.2 211 344-584 486-708 (712)
29 PRK09835 sensor kinase CusS; P 100.0 3.8E-26 8.2E-31 249.3 31.2 238 322-584 240-480 (482)
30 PRK09470 cpxA two-component se 100.0 5.2E-26 1.1E-30 246.8 30.9 238 321-585 220-458 (461)
31 PRK10337 sensor protein QseC; 100.0 4.5E-26 9.8E-31 246.3 29.8 232 323-582 216-449 (449)
32 TIGR02966 phoR_proteo phosphat 100.0 3.3E-26 7.1E-31 237.0 26.8 216 344-582 114-333 (333)
33 PRK11100 sensory histidine kin 99.9 6.8E-26 1.5E-30 246.9 30.0 233 328-585 241-474 (475)
34 PRK11073 glnL nitrogen regulat 99.9 6.3E-26 1.4E-30 236.7 27.6 217 343-584 129-347 (348)
35 PRK09467 envZ osmolarity senso 99.9 6.2E-26 1.3E-30 244.3 28.2 228 322-585 207-434 (435)
36 PRK10600 nitrate/nitrite senso 99.9 4.1E-23 9E-28 229.2 48.4 357 123-585 199-557 (569)
37 PRK11360 sensory histidine kin 99.9 1.4E-24 3E-29 243.8 29.3 214 343-586 389-603 (607)
38 PRK11644 sensory histidine kin 99.9 1.8E-23 4E-28 225.9 32.5 248 288-584 245-494 (495)
39 KOG0519 Sensory transduction h 99.9 3.6E-27 7.8E-32 264.5 1.0 628 2-629 30-683 (786)
40 COG0642 BaeS Signal transducti 99.9 2.6E-23 5.6E-28 214.5 29.7 218 343-587 114-332 (336)
41 COG3850 NarQ Signal transducti 99.9 3E-21 6.5E-26 195.6 43.2 342 121-583 223-567 (574)
42 PRK13560 hypothetical protein; 99.9 1.6E-23 3.4E-28 243.6 25.9 209 331-585 592-804 (807)
43 COG4192 Signal transduction hi 99.9 1.6E-22 3.4E-27 199.3 28.0 213 343-585 450-667 (673)
44 PRK11086 sensory histidine kin 99.9 2.8E-21 6E-26 214.3 22.7 195 344-587 339-538 (542)
45 PRK15053 dpiB sensor histidine 99.9 1.4E-20 3E-25 208.6 25.9 194 347-585 341-540 (545)
46 COG3290 CitA Signal transducti 99.9 1.2E-17 2.5E-22 171.6 41.1 195 346-587 335-534 (537)
47 PRK10935 nitrate/nitrite senso 99.9 1.2E-17 2.6E-22 186.1 42.4 188 351-585 367-560 (565)
48 COG3851 UhpB Signal transducti 99.8 1.2E-17 2.6E-22 160.5 28.5 245 290-583 248-493 (497)
49 PRK13559 hypothetical protein; 99.8 7.3E-19 1.6E-23 184.4 20.7 185 344-585 170-360 (361)
50 PF02518 HATPase_c: Histidine 99.8 1.6E-19 3.4E-24 155.0 9.5 109 455-584 1-110 (111)
51 COG4585 Signal transduction hi 99.8 1.3E-16 2.9E-21 166.9 29.3 195 342-584 169-365 (365)
52 PRK10547 chemotaxis protein Ch 99.7 3.2E-16 7E-21 171.3 20.3 147 417-587 343-526 (670)
53 COG4564 Signal transduction hi 99.6 1.4E-12 3E-17 124.5 32.7 203 340-586 247-449 (459)
54 COG3920 Signal transduction hi 99.6 1.1E-12 2.3E-17 125.3 26.7 196 343-587 18-218 (221)
55 COG3275 LytS Putative regulato 99.6 9.7E-11 2.1E-15 117.9 38.6 318 163-588 227-555 (557)
56 COG0643 CheA Chemotaxis protei 99.5 2E-13 4.4E-18 150.0 19.7 147 416-586 389-575 (716)
57 PRK04184 DNA topoisomerase VI 99.5 2.9E-13 6.4E-18 142.9 14.9 146 454-623 31-185 (535)
58 smart00387 HATPase_c Histidine 99.5 9E-13 2E-17 112.2 12.9 110 455-585 1-111 (111)
59 PRK14868 DNA topoisomerase VI 99.3 4.4E-11 9.5E-16 128.9 13.8 130 436-587 22-162 (795)
60 TIGR01052 top6b DNA topoisomer 99.3 6.8E-11 1.5E-15 123.8 14.2 111 453-584 22-142 (488)
61 KOG0519 Sensory transduction h 99.3 2.3E-12 5E-17 145.6 3.5 241 347-590 224-494 (786)
62 cd00075 HATPase_c Histidine ki 99.2 6E-11 1.3E-15 99.2 10.7 101 460-582 1-103 (103)
63 PRK15429 formate hydrogenlyase 99.2 1.3E-09 2.8E-14 123.2 24.4 187 130-330 171-364 (686)
64 TIGR01925 spIIAB anti-sigma F 99.2 1.5E-10 3.3E-15 103.1 12.3 97 456-582 36-136 (137)
65 PRK03660 anti-sigma F factor; 99.2 3.5E-10 7.6E-15 102.0 12.9 103 456-588 36-142 (146)
66 PRK11061 fused phosphoenolpyru 99.2 3.6E-09 7.7E-14 118.9 23.3 161 143-317 2-164 (748)
67 COG2972 Predicted signal trans 99.2 6.5E-09 1.4E-13 111.8 23.6 96 459-585 350-453 (456)
68 PRK14867 DNA topoisomerase VI 99.1 3.7E-10 8E-15 121.9 12.3 112 456-587 33-152 (659)
69 PF00512 HisKA: His Kinase A ( 99.1 6.5E-10 1.4E-14 85.6 10.0 65 344-408 2-68 (68)
70 PRK04069 serine-protein kinase 99.0 3.7E-09 8E-14 96.5 13.1 107 456-590 39-149 (161)
71 KOG0787 Dehydrogenase kinase [ 99.0 6.3E-08 1.4E-12 95.1 21.4 190 377-588 172-384 (414)
72 TIGR01817 nifA Nif-specific re 98.9 7.7E-08 1.7E-12 105.8 20.2 158 143-314 4-163 (534)
73 TIGR01924 rsbW_low_gc serine-p 98.8 5.3E-08 1.2E-12 88.5 12.1 105 456-588 39-147 (159)
74 PF13492 GAF_3: GAF domain; PD 98.8 1E-07 2.2E-12 83.5 13.0 129 158-309 1-129 (129)
75 COG3605 PtsP Signal transducti 98.7 1.1E-06 2.3E-11 91.2 17.0 155 145-313 4-160 (756)
76 PRK15429 formate hydrogenlyase 98.6 1.3E-06 2.9E-11 98.9 19.2 172 143-329 8-183 (686)
77 PF01590 GAF: GAF domain; Int 98.6 1.8E-07 4E-12 84.7 10.1 136 158-307 1-154 (154)
78 PF14501 HATPase_c_5: GHKL dom 98.6 1.2E-06 2.5E-11 73.1 12.1 95 456-583 2-100 (100)
79 PRK05022 anaerobic nitric oxid 98.5 5.8E-06 1.3E-10 90.2 19.3 166 144-324 4-173 (509)
80 PF13581 HATPase_c_2: Histidin 98.3 3.3E-06 7.2E-11 73.7 10.1 93 456-581 28-124 (125)
81 smart00388 HisKA His Kinase A 98.3 3.6E-06 7.9E-11 63.6 8.8 63 344-406 2-64 (66)
82 smart00065 GAF Domain present 98.3 1.2E-05 2.6E-10 70.9 13.6 144 158-315 1-147 (149)
83 COG1389 DNA topoisomerase VI, 98.3 5.8E-06 1.2E-10 83.6 10.5 116 457-591 34-157 (538)
84 PF13185 GAF_2: GAF domain; PD 98.2 1.2E-05 2.6E-10 72.2 11.1 135 157-308 2-148 (148)
85 TIGR00585 mutl DNA mismatch re 98.0 2.8E-05 6E-10 79.3 10.7 97 458-581 21-125 (312)
86 COG2172 RsbW Anti-sigma regula 98.0 9E-05 2E-09 65.8 11.9 90 456-575 37-131 (146)
87 cd00082 HisKA Histidine Kinase 97.9 7.5E-05 1.6E-09 55.9 8.5 61 344-404 4-65 (65)
88 COG3604 FhlA Transcriptional r 97.7 0.0014 3.1E-08 68.0 15.5 175 143-331 33-212 (550)
89 COG2203 FhlA FOG: GAF domain [ 97.5 0.00012 2.5E-09 66.9 4.6 159 143-315 3-170 (175)
90 PF13589 HATPase_c_3: Histidin 97.4 4.1E-05 9E-10 67.8 0.8 99 461-584 4-107 (137)
91 PRK00095 mutL DNA mismatch rep 97.3 0.00076 1.6E-08 75.1 9.5 85 459-570 22-113 (617)
92 PRK13558 bacterio-opsin activa 97.3 0.011 2.3E-07 67.6 18.7 146 145-310 289-438 (665)
93 PRK05559 DNA topoisomerase IV 96.0 0.012 2.6E-07 65.5 6.4 101 456-583 34-148 (631)
94 PRK05218 heat shock protein 90 95.9 0.014 3E-07 64.9 6.5 55 512-570 74-141 (613)
95 COG0323 MutL DNA mismatch repa 95.9 0.0064 1.4E-07 67.6 3.8 61 459-541 23-83 (638)
96 PF07568 HisKA_2: Histidine ki 95.7 0.13 2.8E-06 40.0 9.5 73 351-432 2-74 (76)
97 PRK14083 HSP90 family protein; 95.3 0.0093 2E-07 65.6 2.1 49 462-531 26-83 (601)
98 PF11849 DUF3369: Domain of un 95.2 1.1 2.5E-05 41.2 15.5 151 131-317 9-172 (174)
99 PRK05644 gyrB DNA gyrase subun 95.1 0.071 1.5E-06 59.5 8.6 83 456-559 34-130 (638)
100 PTZ00272 heat shock protein 83 94.7 0.026 5.6E-07 63.0 3.8 21 511-531 72-92 (701)
101 TIGR01059 gyrB DNA gyrase, B s 94.5 0.23 4.9E-06 55.9 10.7 50 456-526 27-77 (654)
102 COG0326 HtpG Molecular chapero 94.4 0.065 1.4E-06 58.0 5.7 46 464-529 32-92 (623)
103 COG5385 Uncharacterized protei 94.2 3.8 8.2E-05 36.3 18.6 194 346-583 17-213 (214)
104 PF04340 DUF484: Protein of un 94.1 0.63 1.4E-05 44.9 11.4 160 123-308 53-221 (225)
105 TIGR01055 parE_Gneg DNA topois 93.8 0.18 3.9E-06 56.2 8.0 78 460-560 31-124 (625)
106 smart00433 TOP2c Topoisomerase 93.2 0.11 2.5E-06 57.6 5.2 47 460-527 2-49 (594)
107 PTZ00130 heat shock protein 90 92.6 0.13 2.8E-06 57.9 4.4 18 512-529 136-153 (814)
108 COG5381 Uncharacterized protei 92.4 0.24 5.3E-06 42.5 4.8 48 458-525 62-109 (184)
109 COG1956 GAF domain-containing 92.0 7.7 0.00017 34.5 13.6 118 166-305 40-158 (163)
110 PRK14939 gyrB DNA gyrase subun 91.9 0.49 1.1E-05 53.5 7.9 48 458-526 36-84 (756)
111 PF10090 DUF2328: Uncharacteri 91.4 12 0.00025 34.7 18.3 170 360-570 2-174 (182)
112 KOG1979 DNA mismatch repair pr 89.3 0.46 1E-05 50.4 4.4 59 460-540 28-86 (694)
113 KOG1978 DNA mismatch repair pr 87.9 0.61 1.3E-05 50.7 4.4 59 460-540 21-79 (672)
114 PF14689 SPOB_a: Sensor_kinase 87.6 3.1 6.7E-05 30.8 6.8 45 347-395 15-59 (62)
115 COG4251 Bacteriophytochrome (l 87.1 9.8 0.00021 41.5 12.5 59 151-209 140-200 (750)
116 PLN03237 DNA topoisomerase 2; 83.8 1.5 3.2E-05 52.8 5.2 100 458-583 76-192 (1465)
117 TIGR01058 parE_Gpos DNA topois 83.1 0.93 2E-05 50.6 3.1 50 456-526 31-81 (637)
118 KOG1977 DNA mismatch repair pr 81.9 1.7 3.6E-05 47.4 4.3 58 458-538 20-77 (1142)
119 PF07730 HisKA_3: Histidine ki 79.2 19 0.0004 26.9 8.3 55 344-398 2-58 (68)
120 PTZ00108 DNA topoisomerase 2-l 78.1 3.4 7.4E-05 49.9 5.6 103 458-584 56-176 (1388)
121 PLN03128 DNA topoisomerase 2; 77.7 3 6.6E-05 49.6 5.0 103 458-584 51-168 (1135)
122 PHA02569 39 DNA topoisomerase 77.5 1.4 3E-05 48.9 2.1 83 458-562 44-145 (602)
123 PRK10963 hypothetical protein; 75.9 77 0.0017 30.4 17.2 63 123-186 50-116 (223)
124 COG0187 GyrB Type IIA topoisom 70.8 1.2 2.6E-05 48.3 -0.3 48 458-528 35-85 (635)
125 COG5393 Predicted membrane pro 70.7 27 0.00058 29.1 7.3 52 51-108 53-104 (131)
126 PF05297 Herpes_LMP1: Herpesvi 68.8 1.6 3.4E-05 42.1 0.0 34 16-49 36-77 (381)
127 PRK05415 hypothetical protein; 68.2 91 0.002 31.9 12.2 89 85-173 98-197 (341)
128 PTZ00109 DNA gyrase subunit b; 67.7 0.96 2.1E-05 51.5 -2.0 51 456-527 126-177 (903)
129 PF07536 HWE_HK: HWE histidine 66.8 51 0.0011 26.0 8.2 70 351-432 2-71 (83)
130 TIGR01620 hyp_HI0043 conserved 65.3 1.2E+02 0.0026 30.2 12.1 111 59-172 23-145 (289)
131 COG4377 Predicted membrane pro 65.0 16 0.00035 33.6 5.5 37 29-65 15-51 (258)
132 PRK10263 DNA translocase FtsK; 60.0 68 0.0015 38.8 10.8 19 23-41 71-92 (1355)
133 COG4587 ABC-type uncharacteriz 57.7 94 0.002 30.1 9.4 49 17-66 103-156 (268)
134 PF07851 TMPIT: TMPIT-like pro 57.1 2.3E+02 0.005 28.9 13.4 69 333-403 23-91 (330)
135 PF07495 Y_Y_Y: Y_Y_Y domain; 56.4 13 0.00029 27.5 3.1 48 242-291 2-57 (66)
136 PF10856 DUF2678: Protein of u 50.6 31 0.00067 28.8 4.4 26 31-56 69-96 (118)
137 PF10754 DUF2569: Protein of u 49.8 1.8E+02 0.004 25.8 9.8 43 20-62 54-97 (149)
138 KOG0355 DNA topoisomerase type 49.5 21 0.00046 40.2 4.4 53 455-527 49-102 (842)
139 PF10966 DUF2768: Protein of u 49.0 56 0.0012 23.7 5.0 37 26-63 5-42 (58)
140 PF10086 DUF2324: Putative mem 46.6 98 0.0021 29.7 8.0 37 32-68 2-38 (223)
141 PF06103 DUF948: Bacterial pro 46.0 1.5E+02 0.0033 23.6 9.6 36 101-136 10-45 (90)
142 COG4708 Predicted membrane pro 45.2 1.2E+02 0.0025 26.6 7.2 50 25-74 74-126 (169)
143 KOG3689 Cyclic nucleotide phos 45.1 1.6E+02 0.0035 33.3 10.2 169 140-320 163-343 (707)
144 cd08766 Cyt_b561_ACYB-1_like P 43.9 2.3E+02 0.005 25.1 10.2 14 66-79 90-103 (144)
145 PF03729 DUF308: Short repeat 43.5 1.1E+02 0.0025 22.6 6.7 53 47-104 17-69 (72)
146 PF10066 DUF2304: Uncharacteri 41.5 2.2E+02 0.0047 24.0 9.4 10 39-48 19-28 (115)
147 PF06018 CodY: CodY GAF-like d 41.2 2.9E+02 0.0063 25.4 10.6 40 271-311 118-157 (177)
148 PF10131 PTPS_related: 6-pyruv 40.1 2.7E+02 0.0058 31.5 11.3 54 18-74 69-124 (616)
149 PF00556 LHC: Antenna complex 39.4 52 0.0011 21.9 3.5 25 50-74 10-34 (40)
150 PF15449 Retinal: Retinal prot 39.2 6.9E+02 0.015 29.8 13.9 47 455-530 322-368 (1287)
151 PF10883 DUF2681: Protein of u 38.2 1.9E+02 0.0041 23.1 6.9 19 89-107 6-24 (87)
152 PF06305 DUF1049: Protein of u 38.2 1.4E+02 0.0031 22.1 6.3 12 127-138 51-62 (68)
153 PF05449 DUF754: Protein of un 37.3 1.7E+02 0.0036 23.2 6.6 45 29-75 4-48 (83)
154 PF11694 DUF3290: Protein of u 36.7 3E+02 0.0066 24.5 8.9 47 26-72 21-67 (149)
155 PF14248 DUF4345: Domain of un 36.0 2.7E+02 0.0059 23.7 9.1 52 28-81 50-101 (124)
156 PF02652 Lactate_perm: L-lacta 35.3 2E+02 0.0042 31.7 9.1 77 21-108 177-253 (522)
157 PTZ00271 hypoxanthine-guanine 34.9 91 0.002 29.6 5.7 15 609-623 115-129 (211)
158 KOG1608 Protein transporter of 34.7 4.3E+02 0.0094 26.3 10.1 29 51-79 246-275 (374)
159 PF14979 TMEM52: Transmembrane 33.3 40 0.00087 29.4 2.7 18 51-68 21-38 (154)
160 PF06570 DUF1129: Protein of u 33.0 4.2E+02 0.0091 24.9 11.1 30 19-48 79-108 (206)
161 PRK15423 hypoxanthine phosphor 32.6 1E+02 0.0023 28.3 5.6 14 609-622 89-102 (178)
162 COG3159 Uncharacterized protei 32.2 4.4E+02 0.0096 24.9 14.7 64 123-186 51-118 (218)
163 PF06785 UPF0242: Uncharacteri 32.1 5.5E+02 0.012 26.0 17.2 82 323-404 139-225 (401)
164 COG3071 HemY Uncharacterized e 31.7 1.8E+02 0.0039 30.2 7.4 40 344-383 248-287 (400)
165 PF11152 DUF2930: Protein of u 31.5 1.4E+02 0.003 28.0 6.1 73 210-302 120-193 (195)
166 COG4960 CpaA Flp pilus assembl 31.1 3E+02 0.0064 25.0 7.8 45 25-69 2-49 (168)
167 TIGR02921 PEP_integral PEP-CTE 31.0 2.1E+02 0.0046 31.3 8.0 30 29-59 158-187 (952)
168 PRK13661 hypothetical protein; 30.5 2.8E+02 0.0061 25.6 8.0 44 53-97 107-156 (182)
169 PF11177 DUF2964: Protein of u 30.5 2.3E+02 0.0049 21.0 6.1 28 50-77 5-32 (62)
170 PF04279 IspA: Intracellular s 30.4 4.3E+02 0.0094 24.2 11.1 36 41-76 103-141 (176)
171 PRK09162 hypoxanthine-guanine 29.9 1.4E+02 0.003 27.6 6.0 14 609-622 94-107 (181)
172 PF04791 LMBR1: LMBR1-like mem 28.6 7.7E+02 0.017 26.6 16.5 36 9-44 69-105 (471)
173 COG4420 Predicted membrane pro 28.2 4.8E+02 0.011 24.1 11.1 12 81-92 87-98 (191)
174 COG3768 Predicted membrane pro 28.0 6.4E+02 0.014 25.4 11.7 45 76-123 90-134 (350)
175 PF12725 DUF3810: Protein of u 27.7 1.1E+02 0.0023 31.3 5.2 24 23-46 25-48 (318)
176 MTH00145 CYTB cytochrome b; Pr 27.5 3.7E+02 0.0081 28.2 9.2 88 18-105 42-134 (379)
177 KOG0020 Endoplasmic reticulum 27.5 55 0.0012 34.6 3.0 16 512-527 143-158 (785)
178 PF11847 DUF3367: Domain of un 27.1 3.3E+02 0.0072 30.7 9.0 89 22-115 123-221 (680)
179 PRK12585 putative monovalent c 27.1 5.1E+02 0.011 24.0 11.4 29 19-48 4-32 (197)
180 PRK06231 F0F1 ATP synthase sub 26.4 5.5E+02 0.012 24.2 10.5 14 55-68 18-31 (205)
181 cd08765 Cyt_b561_CYBRD1 Verteb 26.2 4.8E+02 0.01 23.4 10.2 12 68-79 99-110 (153)
182 PF11833 DUF3353: Protein of u 26.2 4.3E+02 0.0092 24.8 8.5 38 38-75 127-164 (194)
183 PF03904 DUF334: Domain of unk 25.6 1.6E+02 0.0035 27.9 5.5 8 66-73 173-180 (230)
184 KOG3088 Secretory carrier memb 25.5 81 0.0018 31.0 3.6 20 314-333 67-86 (313)
185 KOG2493 Na+/Pi symporter [Inor 25.1 2.8E+02 0.006 29.7 7.6 38 41-79 185-222 (512)
186 PRK00888 ftsB cell division pr 25.1 4E+02 0.0087 22.1 8.8 15 128-142 38-52 (105)
187 PF07332 DUF1469: Protein of u 25.0 4.2E+02 0.009 22.3 9.3 11 127-137 109-119 (121)
188 PTZ00127 cytochrome c oxidase 24.9 8.4E+02 0.018 25.8 12.1 36 69-107 364-399 (403)
189 PF13491 DUF4117: Domain of un 24.8 4E+02 0.0087 23.9 8.2 52 22-73 53-112 (171)
190 TIGR03063 srtB_target sortase 24.8 85 0.0018 19.3 2.3 16 32-47 12-29 (29)
191 cd00284 Cytochrome_b_N Cytochr 24.6 5.9E+02 0.013 23.9 9.8 89 18-107 33-129 (200)
192 PRK13922 rod shape-determining 24.1 7E+02 0.015 24.6 10.6 24 124-147 76-99 (276)
193 TIGR00799 mtp Golgi 4-transmem 24.1 3.8E+02 0.0082 25.6 7.5 54 8-62 47-101 (258)
194 PF07492 Trehalase_Ca-bi: Neut 23.6 55 0.0012 20.1 1.3 11 511-521 14-24 (30)
195 PF12459 DUF3687: D-Ala-teicho 23.3 1.3E+02 0.0029 20.3 3.2 17 29-45 14-30 (42)
196 COG0813 DeoD Purine-nucleoside 22.7 99 0.0021 29.3 3.5 52 452-524 18-69 (236)
197 PRK14872 rod shape-determining 22.7 6.4E+02 0.014 25.9 9.5 48 91-142 35-82 (337)
198 COG2820 Udp Uridine phosphoryl 22.7 2E+02 0.0044 27.7 5.6 52 451-524 20-71 (248)
199 PF06105 Aph-1: Aph-1 protein; 22.6 2E+02 0.0044 27.8 5.7 46 33-80 13-58 (238)
200 PLN02680 carbon-monoxide oxyge 22.4 7.1E+02 0.015 24.0 10.0 15 65-79 128-142 (232)
201 PF14936 p53-inducible11: Tumo 22.4 5.1E+02 0.011 23.5 7.6 6 19-24 55-60 (179)
202 COG4097 Predicted ferric reduc 22.1 7.4E+02 0.016 25.8 9.6 61 28-89 131-193 (438)
203 COG2236 Predicted phosphoribos 22.0 49 0.0011 30.9 1.4 21 610-630 85-105 (192)
204 MTH00100 CYTB cytochrome b; Pr 21.9 7E+02 0.015 26.2 10.0 89 19-107 42-135 (379)
205 PTZ00149 hypoxanthine phosphor 21.8 1.9E+02 0.0041 28.2 5.4 15 609-623 147-161 (241)
206 KOG0019 Molecular chaperone (H 21.6 64 0.0014 35.3 2.3 17 511-527 102-118 (656)
207 PF06703 SPC25: Microsomal sig 21.4 2.3E+02 0.005 25.5 5.7 24 21-44 23-46 (162)
208 PF06638 Strabismus: Strabismu 21.4 3.4E+02 0.0073 29.3 7.4 9 466-474 450-458 (505)
209 PF06181 DUF989: Protein of un 21.2 3.4E+02 0.0074 27.0 6.9 45 32-77 230-277 (300)
210 TIGR00219 mreC rod shape-deter 21.1 5.9E+02 0.013 25.5 9.0 13 613-625 266-278 (283)
211 cd07955 Anticodon_Ia_Cys_like 21.0 2.7E+02 0.0058 21.7 5.3 18 343-360 29-46 (81)
212 COG3462 Predicted membrane pro 21.0 4.9E+02 0.011 21.6 7.9 67 51-117 8-79 (117)
213 COG4965 TadB Flp pilus assembl 20.9 7.5E+02 0.016 25.0 9.4 31 144-174 140-170 (309)
214 KOG3088 Secretory carrier memb 20.8 1.8E+02 0.0039 28.7 4.9 32 315-346 61-92 (313)
215 PF11382 DUF3186: Protein of u 20.4 4.5E+02 0.0098 26.6 8.1 46 310-355 31-76 (308)
216 COG1620 LldP L-lactate permeas 20.1 4.3E+02 0.0094 28.7 8.0 75 26-111 184-259 (522)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-46 Score=394.35 Aligned_cols=469 Identities=20% Similarity=0.293 Sum_probs=345.7
Q ss_pred hhHHHHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhh-hccchhhHHHHHHHHHHHHHHHHHHHH
Q 006701 24 SDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT-FTVHSKAVAVVMTIAKMACAFVSCITA 102 (634)
Q Consensus 24 s~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~vs~~~a 102 (634)
.|.++++.+.++...+..++.+.=+...-.++.+.|.++++- |+ +|+ .++.+++|+ .+
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av--------~~g~~p------------a~~aailsv-l~ 455 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAV--------LTGRWP------------AVLAALLSV-LV 455 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH--------HhchHH------------HHHHHHHHH-HH
Confidence 688899999999988888777666655444444444443321 22 110 111111111 11
Q ss_pred HHHHHHhhhhhhh-------------ccHHHHHHHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHH
Q 006701 103 LMLVHIIPDLLSV-------------KTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVE 169 (634)
Q Consensus 103 ~~l~~~~p~~l~~-------------~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~ 169 (634)
|-++..-|..-.. -....+..+++.+++++....++++++.+.++++++.+..+.+.++++..+.++
T Consensus 456 fNyFF~ePryTf~v~d~~y~vTf~vml~vai~t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~q 535 (890)
T COG2205 456 FNYFFTEPRYTFAVSDPQYLVTFAVMLAVALLTGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQ 535 (890)
T ss_pred HhheecCCceEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111111211100 001223567888899999999999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceE
Q 006701 170 LGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVA 249 (634)
Q Consensus 170 l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 249 (634)
+.++++. ++.+++++.++....+ ...+. -.+.+.....+++.++++-- .+....|....
T Consensus 536 i~~~~~~-~v~i~l~~~~~~~~~~--~~~~~-----l~~~d~aaa~W~~~~~~~AG-------------~gTdTlpg~~~ 594 (890)
T COG2205 536 IASLLNQ-RVVILLPDDNGKLQPL--GNPDG-----LSADDRAAAQWAFENGKPAG-------------AGTDTLPGAKY 594 (890)
T ss_pred HHHHhCC-ceEEEEecCCcccccc--cCCcc-----ccHHHHHHhhchhhCCCccc-------------cCCCCCCCCce
Confidence 9999988 6777888766554111 11110 00001112233333333210 11111223333
Q ss_pred EeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 250 VRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVA 329 (634)
Q Consensus 250 ~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~ 329 (634)
+..| +..++...||+.+.........+++..++..+++|++.|+++..+.++..+.+-+
T Consensus 595 ~~lP--------------l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~------- 653 (890)
T COG2205 595 LYLP--------------LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA------- 653 (890)
T ss_pred eEee--------------cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3444 4455567888888888777789999999999999999999998887665443311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006701 330 LDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (634)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 406 (634)
.+..+.++.|++.+||||||||++|.|.++.|... .++ ++..+.+..|.+.++++..++++|++++|++
T Consensus 654 --------~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~ 725 (890)
T COG2205 654 --------AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQ 725 (890)
T ss_pred --------HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 12234578999999999999999999999999864 334 4477899999999999999999999999999
Q ss_pred CCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEE
Q 006701 407 DGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIAS 485 (634)
Q Consensus 407 ~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~ 485 (634)
+|.+.++.++..+.+++.+++..++...... .+.++++.+++. +..|...++||+.||+.||+||++++. +.+...
T Consensus 726 sG~~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~ 802 (890)
T COG2205 726 SGGVNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAG 802 (890)
T ss_pred cCCcccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE
Confidence 9999999999999999999999888765444 467777777775 778999999999999999999999876 666666
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEE
Q 006701 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHI 565 (634)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i 565 (634)
...+. +.|+|.|+|+|||+++.++||++||+..+.+. ..|+||||+||+.+++.|||+|
T Consensus 803 ~~~~~--------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~~iv~ahgG~I 861 (890)
T COG2205 803 VEREN--------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICRGIVEAHGGTI 861 (890)
T ss_pred Eecce--------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHHHHHHHcCCeE
Confidence 65543 99999999999999999999999999877554 6799999999999999999999
Q ss_pred EEEecCCCCceEEEEEEEecCCC
Q 006701 566 WLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 566 ~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
++++. +++|++|+|.||....+
T Consensus 862 ~a~~~-~~gGa~f~~~LP~~~~~ 883 (890)
T COG2205 862 SAENN-PGGGAIFVFTLPVEEDP 883 (890)
T ss_pred EEEEc-CCCceEEEEEeecCCCC
Confidence 99998 89999999999986554
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=7.9e-40 Score=376.72 Aligned_cols=265 Identities=29% Similarity=0.469 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceee
Q 006701 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 338 ~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
+++++.+++|++.++||+||||++|.|+++++.+...+++.+++++.+..+++++..++++++++++++.+...+.+.++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 33445678999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCC
Q 006701 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~ 497 (634)
++.++++++...+...+..+++.+.++.+++.|..+.+|+.++.||+.||++||+||++.|.+.+.+....++
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD------- 429 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC-------
Confidence 9999999999999999999999999998888887788999999999999999999999989888887765333
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC-CCCCC-CCCccccHHHHHHHHHHhCCEEEEEecCCCCc
Q 006701 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-GSSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKG 575 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~-~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~G 575 (634)
.+.|+|.|||+|||++.++++|+|||+++ ..... ..|+|+||+|||++++.|||+|+++|. +|+|
T Consensus 430 ------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~G 496 (779)
T PRK11091 430 ------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGKG 496 (779)
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCCe
Confidence 39999999999999999999999999985 33322 469999999999999999999999999 9999
Q ss_pred eEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006701 576 STVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 576 t~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
|+|++++|++..+....... ........+.+|||||||+.+|.+++.
T Consensus 497 t~f~i~lP~~~~~~~~~~~~--------~~~~~~~~~~~ILivdD~~~~~~~l~~ 543 (779)
T PRK11091 497 SCFTLTIHAPAVAEEVEDAF--------DEDDMPLPALNILLVEDIELNVIVARS 543 (779)
T ss_pred EEEEEEEecccccccccccc--------ccccccccccceEEEcCCHHHHHHHHH
Confidence 99999999876543221111 011222456899999999999998653
No 3
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=4.3e-38 Score=360.71 Aligned_cols=387 Identities=22% Similarity=0.328 Sum_probs=286.1
Q ss_pred HHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccccc
Q 006701 124 NRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 203 (634)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 203 (634)
.++.+++++....++++++.+.++++++.+....+.++++..+.+.+.+.++.+ +++|++++++.........
T Consensus 493 ~l~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~~~~~~-~~l~l~~~~g~~~~~~~~~------ 565 (895)
T PRK10490 493 NLTAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLASTFQAR-SQLLLPDDNGKLQPLTHDQ------ 565 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCC-EEEEEEcCCCccccccccc------
Confidence 345556666666788899999999999999999999999999999999999975 5688887655432211110
Q ss_pred ccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC
Q 006701 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
...+.+.....+++..+.+.... ....+......+|+.. ++..+|++.+...
T Consensus 566 -~~~~~~~~~~~w~~~~~~~~g~~-------------~~tl~~~~~~~lPl~~--------------~~~~~Gvl~l~~~ 617 (895)
T PRK10490 566 -GMTPWDDAIARWSFDKGQPAGAG-------------TDTLPGVPYQILPLKS--------------AQKTYGLLAVEPG 617 (895)
T ss_pred -cccchHHHHHHHHHhcCCccccC-------------cCcCCCCceEEEEEEE--------------CCEEEEEEEEecC
Confidence 00111112222333332221100 0112223344556533 3345777777654
Q ss_pred C-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006701 284 G-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 284 ~-~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I 362 (634)
. ...|++++..+++.++.+++.++++..+..+..+. +...+..+.++.|++.++||+||||++|
T Consensus 618 ~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~---------------~l~~e~e~lr~~lla~isHELrtPLt~I 682 (895)
T PRK10490 618 NLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQA---------------RLASEREQLRNALLAALSHDLRTPLTVL 682 (895)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 4 45788999999999999999999876543321111 0111223346789999999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCce
Q 006701 363 IALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (634)
Q Consensus 363 ~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (634)
.++++++.... ...+..+.++.+.+.+.++..++++++++++++.+...+..+++++.+++++++..+......+++.
T Consensus 683 ~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~i~ 762 (895)
T PRK10490 683 FGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPIN 762 (895)
T ss_pred HHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999886542 2233446788999999999999999999999999988889999999999999999998776655544
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcC
Q 006701 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (634)
Q Consensus 441 ~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G 519 (634)
++++.+.+ .+.+|+..+.||+.||++||+||++++. +.+.....++ .+.|+|.|||
T Consensus 763 --l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~--------------------~v~I~V~D~G 819 (895)
T PRK10490 763 --LSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE--------------------RLQLDVWDNG 819 (895)
T ss_pred --EEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC--------------------EEEEEEEECC
Confidence 44555554 4778999999999999999999997754 5555443322 3899999999
Q ss_pred CCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006701 520 CGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 520 ~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
+||+++..+++|+||++.+... ...|+|+||++||++++.|||+|+++|. +++||+|++.||+.
T Consensus 820 ~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Ivk~ive~hGG~I~v~s~-~~~Gt~f~i~LPl~ 883 (895)
T PRK10490 820 PGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAICRAIVEVHGGTIWAENR-PEGGACFRVTLPLE 883 (895)
T ss_pred CCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHHHHHHHHcCCEEEEEEC-CCCeEEEEEEeECC
Confidence 9999999999999999876543 3359999999999999999999999998 89999999999985
No 4
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=9.7e-40 Score=370.20 Aligned_cols=275 Identities=21% Similarity=0.301 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006701 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (634)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 405 (634)
.+++++++++++++.++.+++|+++++||+||||++|.++++.+.....+++.+++++.+.++++++..+++++++++++
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777788888888999999999999999999999999999887778888999999999999999999999999999
Q ss_pred hCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Q 006701 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (634)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~ 485 (634)
+.+...+..+++++.+++++++..+...++.+++.+.+..+.+.+..+.+|+.++.||+.||++||+||++.|.+.+.+.
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~ 591 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVD 591 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999999999999999999999999998887666667889999999999999999999999998888776
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEE
Q 006701 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHI 565 (634)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i 565 (634)
..... ..++.|+|.|+|+||+++.++++|+||++++......+|+||||+|||++++.|||+|
T Consensus 592 ~~~~~-----------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~I 654 (894)
T PRK10618 592 QDESS-----------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGHL 654 (894)
T ss_pred EccCC-----------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCEE
Confidence 54322 1259999999999999999999999999977654445699999999999999999999
Q ss_pred EEEecCCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006701 566 WLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 566 ~v~s~~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+++|. +|+||+|+|+||+.....+.. ......+.|.+||||||++.+|.+++
T Consensus 655 ~v~S~-~g~GT~F~I~LPl~~~~~~~~-----------~~~~~~l~g~~vLlvdD~~~~r~~l~ 706 (894)
T PRK10618 655 TIKSR-EGLGTRYSIHLKMLAADPEVE-----------EEEEKLLDGVTVLLDITSEEVRKIVT 706 (894)
T ss_pred EEEEC-CCCcEEEEEEEEccCCccccc-----------ccccccCCCCEEEEEeCCHHHHHHHH
Confidence 99999 999999999999853322111 01123357889999999999998854
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1e-36 Score=350.87 Aligned_cols=447 Identities=16% Similarity=0.198 Sum_probs=300.8
Q ss_pred HHHHHHhhhhchHHHhHHHHHHHHHHhcccchH--HHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEe-eccccccc
Q 006701 128 ELDREMGLILTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYT-LNNQIQIG 204 (634)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~--~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~ 204 (634)
.+++....++++.+..+.+..++..+....+.+ ..+..++..+.+.++.+.|++++.+.++........ ....
T Consensus 261 ~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 336 (828)
T PRK13837 261 RLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTPD---- 336 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCCC----
Confidence 344444556666777778888988887765554 899999999999999999999998877765432211 1000
Q ss_pred ccccc-CChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC
Q 006701 205 SSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
..+.. ....+.............+........ ......+....+++|+.. ++...+++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------------~~~~~g~l~~~~~ 400 (828)
T PRK13837 337 PVWPDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLAFKS--------------GDRIVALLGLGRQ 400 (828)
T ss_pred CCchHHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEEecc--------------CCceEEEEEeccc
Confidence 00000 001111111122111111111111111 111122334444555422 3333555555433
Q ss_pred -CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006701 284 -GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 284 -~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I 362 (634)
....|..++..+++.++.+++.++.+.+...+..+.+++++ + .+..+.+++|+++++||+||||++|
T Consensus 401 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l~-------~-----~~rl~~l~~~~~~iaHeLrtPL~~I 468 (828)
T PRK13837 401 RYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRLE-------H-----ARRLEAVGTLASGIAHNFNNILGAI 468 (828)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 23456689999999999999999877765544433332221 1 1223457889999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceE
Q 006701 363 IALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSM 441 (634)
Q Consensus 363 ~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 441 (634)
.++++++.+. ..+++..++++.+.++++++..++++++++++... ...+++++.++++++...++... .+++.+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i~l 543 (828)
T PRK13837 469 LGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGVEL 543 (828)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCcEE
Confidence 9999988754 34556788999999999999999999999998543 34568999999999999887544 467788
Q ss_pred EEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006701 442 TLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 442 ~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
.+..++.. ..+.+|+..+.|++.||++||+||++. |.+.+.+........ ............++.|+|+|||+
T Consensus 544 ~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~-----~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 544 DFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAP-----KVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred EEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccc-----cccccccCCCCCEEEEEEEECCC
Confidence 87765543 357889999999999999999999865 566666655421100 00000001123358999999999
Q ss_pred CCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCCcc
Q 006701 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 600 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~ 600 (634)
||+++..+++|+||++++. +|+|+||++||++++.|||+|+++|. +|+||+|+|+||.....+.....
T Consensus 618 GI~~e~~~~iFe~F~~~~~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~~~------ 685 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA-----GGTGLGLATVHGIVSAHAGYIDVQST-VGRGTRFDVYLPPSSKVPVAPQA------ 685 (828)
T ss_pred CCCHHHHHHhhCCcccCCC-----CCCcchHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEeCCCCCCCCccc------
Confidence 9999999999999998764 58999999999999999999999999 89999999999986533221110
Q ss_pred CCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006701 601 GRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 601 ~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
...+...+..++.+|||||||+.++..++
T Consensus 686 ~~~~~~~~~~~~~~ILvVddd~~~~~~l~ 714 (828)
T PRK13837 686 FFGPGPLPRGRGETVLLVEPDDATLERYE 714 (828)
T ss_pred cCCCcccCCCCCCEEEEEcCCHHHHHHHH
Confidence 00111122246779999999999998753
No 6
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=8.6e-37 Score=351.62 Aligned_cols=241 Identities=31% Similarity=0.506 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 325 EQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (634)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 404 (634)
+..+++++++++++++++.+..|++.++||+||||++|.++++++.....+++.+++++.+.++++++..++++++++++
T Consensus 428 ~~e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~sr 507 (924)
T PRK10841 428 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 507 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777888889999999999999999999999999988888888999999999999999999999999999
Q ss_pred hhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEE
Q 006701 405 LEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA 484 (634)
Q Consensus 405 ~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~ 484 (634)
++.+...++.+++++.+++++++..+...+..+++.+.+.++++.+..+.+|+.++.||+.||++||+||++.|.+.+.+
T Consensus 508 ie~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v 587 (924)
T PRK10841 508 IESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHV 587 (924)
T ss_pred hcCCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999988888887788999999999999999999999999888777
Q ss_pred EeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHHHhCC
Q 006701 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGG 563 (634)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG 563 (634)
...++ ++.|+|.|+|+||+++..+++|+||++.+.... ...|+||||++|+++++.|||
T Consensus 588 ~~~~~--------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG 647 (924)
T PRK10841 588 RVDGD--------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDG 647 (924)
T ss_pred EEeCC--------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCC
Confidence 65432 499999999999999999999999999765433 335999999999999999999
Q ss_pred EEEEEecCCCCceEEEEEEEecC
Q 006701 564 HIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 564 ~i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
+|+++|. +|+||+|+|.||+..
T Consensus 648 ~I~v~S~-~g~Gt~F~i~LP~~~ 669 (924)
T PRK10841 648 DISVDSE-PGMGSQFTIRIPLYG 669 (924)
T ss_pred EEEEEEc-CCCcEEEEEEEECCc
Confidence 9999999 899999999999853
No 7
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=3.4e-36 Score=355.80 Aligned_cols=270 Identities=32% Similarity=0.530 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 006701 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
++++++.+++++.+..|++.++||+||||+.|.++++++.+...+++.+++++.+.++++++..++++++++++++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34456667778889999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCC
Q 006701 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~ 490 (634)
.+..+++++.++++++...+...+..+++.+.+.++++.|..+.+|+.++.||+.||++||+||++.|.+.+.+...++.
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~ 610 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS 610 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC
Confidence 99999999999999999999999999999999999888887788999999999999999999999999888877665432
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006701 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.+.|.|.|+|+||+++..+++|+||++.+. .....|+|+||+|||++++.|||+|+++|.
T Consensus 611 -------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~ 670 (968)
T TIGR02956 611 -------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADG-RRRSGGTGLGLAISQRLVEAMDGELGVESE 670 (968)
T ss_pred -------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCC-CCCCCCccHHHHHHHHHHHHcCCEEEEEec
Confidence 289999999999999999999999999883 334469999999999999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006701 571 GLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 571 ~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
+|+||+|+|.||+...+...... ........+.+|||||||+.++.+++.
T Consensus 671 -~~~Gt~f~~~lp~~~~~~~~~~~---------~~~~~~~~~~~iLvvdd~~~~~~~l~~ 720 (968)
T TIGR02956 671 -LGVGSCFWFTLPLTRGKPAEDSA---------TLTVIDLPPQRVLLVEDNEVNQMVAQG 720 (968)
T ss_pred -CCCcEEEEEEEEcCCCCcccccc---------ccccccccccceEEEcCcHHHHHHHHH
Confidence 89999999999987543322110 011233466799999999999998654
No 8
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=4e-34 Score=322.79 Aligned_cols=366 Identities=20% Similarity=0.233 Sum_probs=264.9
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEE
Q 006701 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMR 225 (634)
Q Consensus 146 l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (634)
+.++++.+.+..+.+++++.+++.+.+.++.+.+++|+.++++..+.....++..... ...+.+.+.+......+..+.
T Consensus 307 ~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 385 (679)
T TIGR02916 307 WLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLAQ-AFEPSDSAFCQFLQESGWIIN 385 (679)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCcc-cCCCCCCHHHHHHHhCCCccc
Confidence 4678899999999999999999999999999999999999888766666555433221 234444555555444444433
Q ss_pred cCCCCchhhhhh---cccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC-CCCCccchhhhHHHHHHHH
Q 006701 226 LPYNCPLARIRL---LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVAD 301 (634)
Q Consensus 226 l~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~ 301 (634)
+++....+.... .+..........+.+|+... +. ..|++++.. ..++.++.++.++++.++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~~-------------~~-~~G~l~l~~~~~~~~~~~e~~~lL~~l~~ 451 (679)
T TIGR02916 386 LEEARSEPDHYSGLVLPEWLREIPNAWLIVPLISG-------------EE-LVGFVVLARPRTAGEFNWEVRDLLKTAGR 451 (679)
T ss_pred chhhcCCcccccccccchhhhcCCCceEEEEeccC-------------CE-EEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 332221111000 00011112334566776432 32 355555544 4566899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCH-HHHH
Q 006701 302 QVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRV 380 (634)
Q Consensus 302 ~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~-~~~~ 380 (634)
|++.++++.+..++..+. +..+..+++.+.++||+|||++.+....+...+...++ ..++
T Consensus 452 q~a~~l~~~~~~~~l~~~-------------------~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~ 512 (679)
T TIGR02916 452 QAASYLAQMEASEALAEA-------------------RQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDD 512 (679)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHH
Confidence 999999776654332211 11223567888999999999999988888776554444 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHH
Q 006701 381 MIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRL 460 (634)
Q Consensus 381 ~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l 460 (634)
.++.+.+..+++.++++++.+... ..+..++++.++++++.+..+.. .. .+.++++.+ ..+.+|+..+
T Consensus 513 ~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~--~~--~~~l~~~~~--~~v~~d~~~l 580 (679)
T TIGR02916 513 MLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRAQ--GP--RPEVSIDTD--LSVRADRERL 580 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhhh--cC--CceEEeCCC--ceEEECHHHH
Confidence 788899999999999888754322 45566899999999998876542 23 344444443 3477899999
Q ss_pred HHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC-hhhhhhcccccC
Q 006701 461 MQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-IPLLFTKFAQSR 538 (634)
Q Consensus 461 ~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-~~~if~~f~~~~ 538 (634)
.+++.||++||+||+++ +.+.+.+...++ .+.|+|+|||+||+++. .+++|+||++++
T Consensus 581 ~~vl~nLl~NAik~~~~~~~I~I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~ 640 (679)
T TIGR02916 581 ERVLGHLVQNALEATPGEGRVAIRVERECG--------------------AARIEIEDSGCGMSPAFIRERLFKPFDTTK 640 (679)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEcCC--------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCCC
Confidence 99999999999999875 567776655432 38999999999999999 999999999876
Q ss_pred CCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 539 GSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 539 ~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
+ .|+|+||++||++++.|||+|+++|. +|+||+|++++|
T Consensus 641 ~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 641 G-----AGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred C-----CCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 4 48899999999999999999999998 899999999997
No 9
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-37 Score=292.94 Aligned_cols=227 Identities=24% Similarity=0.454 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeee
Q 006701 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE--QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (634)
Q Consensus 341 ~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~ 418 (634)
.+++..|.+++|||+||||+++.++++.|.+....+. ..+++..-.+..+||.+++++|+.++|++.....++.+.++
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 3446789999999999999999999999998755443 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCC
Q 006701 419 LQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~ 497 (634)
+..++..+++.+....++..+.--+..-+..+.++..|+..+.||+.|+++||+||+|+| ++++.+...+.
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~-------- 373 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET-------- 373 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc--------
Confidence 999999999999887555444312223356677899999999999999999999999974 56666655332
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCC-CCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006701 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
++.++|.|.|.|||.++.++||+.||+.+..+++. +|+||||+|+|++|+.|||.||.+|. .|+||
T Consensus 374 ------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkgt 440 (459)
T COG5002 374 ------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKGT 440 (459)
T ss_pred ------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCce
Confidence 49999999999999999999999999987765554 49999999999999999999999999 99999
Q ss_pred EEEEEEEecCCC
Q 006701 577 TVTFLVKLGICN 588 (634)
Q Consensus 577 ~f~i~lp~~~~~ 588 (634)
+|+|+||.....
T Consensus 441 t~~ftLPy~~~~ 452 (459)
T COG5002 441 TFSFTLPYSGEA 452 (459)
T ss_pred EEEEEecccCcc
Confidence 999999986543
No 10
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.9e-35 Score=347.72 Aligned_cols=241 Identities=30% Similarity=0.466 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
+.++..++.+++++.++.++.+..|++.++||+||||++|.++++++.....+++++++++.+..+++++..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777778889999999999999999999999999988888999999999999999999999999999
Q ss_pred HHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEE
Q 006701 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482 (634)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i 482 (634)
++++.+...+..+++++.++++++...+...+..+++.+.+..+++.+..+.+|+.++.||+.||++||+||++.|.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999888888877889999999999999999999999998888
Q ss_pred EEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhC
Q 006701 483 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMG 562 (634)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~g 562 (634)
.+...++ ++.|+|+|||+||+++.++++|+||++.+.. ..|+||||++|+++++.||
T Consensus 537 ~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~~~~~~g 593 (921)
T PRK15347 537 RVKRHEQ--------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIASSLAKMMG 593 (921)
T ss_pred EEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHHHHHHHHcC
Confidence 7765433 4999999999999999999999999987643 3599999999999999999
Q ss_pred CEEEEEecCCCCceEEEEEEEecCC
Q 006701 563 GHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 563 G~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
|+|+++|. +|+||+|+|.||+...
T Consensus 594 G~i~i~s~-~~~Gt~f~i~lp~~~~ 617 (921)
T PRK15347 594 GELTLFST-PGVGSCFSLVLPLNEY 617 (921)
T ss_pred CEEEEEec-CCCceEEEEEEECCCC
Confidence 99999999 9999999999998653
No 11
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2e-35 Score=346.88 Aligned_cols=276 Identities=29% Similarity=0.489 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (634)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 400 (634)
.++.+...++.+++.+.++..+.+..|++.++||+||||++|.++++++.+...+++.+++++.+.++++++..++++++
T Consensus 421 ~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 500 (914)
T PRK11466 421 AELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDIL 500 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566667777778888999999999999999999999999999887788889999999999999999999999
Q ss_pred HHHHhhCCC--ccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 006701 401 DLSRLEDGS--LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (634)
Q Consensus 401 ~~~~~~~~~--~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g 478 (634)
++++.+.+. ..+..+++++.+++++++..+...+..+++.+.++++++.|..+.+|+..+.||+.||++||+||++.|
T Consensus 501 ~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g 580 (914)
T PRK11466 501 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEG 580 (914)
T ss_pred HHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998763 456678999999999999999999999999999998888887788999999999999999999999999
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHH
Q 006701 479 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFV 558 (634)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv 558 (634)
.+.+.+...+. .+.|.|.|||+||+++..+++|+||++.+.. ..|+|+||+|||+++
T Consensus 581 ~I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~l~ 637 (914)
T PRK11466 581 SIVLRSRTDGE--------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTISSRLA 637 (914)
T ss_pred eEEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHHHHHH
Confidence 88877765432 3899999999999999999999999986532 358999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006701 559 NLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 559 ~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+.|||+|+++|. +|+||+|++.||+.....+... .........+.+|||||||+.++.+++
T Consensus 638 ~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~---------~~~~~~~~~~~~vLivdD~~~~~~~l~ 698 (914)
T PRK11466 638 QAMGGELSATST-PEVGSCFCLRLPLRVATAPVPK---------TVNQAVRLDGLRLLLIEDNPLTQRITA 698 (914)
T ss_pred HHcCCEEEEEec-CCCCeEEEEEEEcccccccccc---------ccccccccCCcceEEEeCCHHHHHHHH
Confidence 999999999999 8999999999998654322111 011122346789999999999998754
No 12
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=8.5e-35 Score=342.28 Aligned_cols=282 Identities=36% Similarity=0.563 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
++.++.++..++++.+++++.+.+|++.++||+||||++|.++++.+.....+++++++++.+.++++++..++++++++
T Consensus 272 l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 351 (919)
T PRK11107 272 MEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDF 351 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777778888899999999999999999999999999888788889999999999999999999999999
Q ss_pred HHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEE
Q 006701 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482 (634)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i 482 (634)
++++.+...+...++++.++++++...+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++.|.+.+
T Consensus 352 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i 431 (919)
T PRK11107 352 SKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDI 431 (919)
T ss_pred HHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEE
Confidence 99999999999999999999999999999999999999999998888877889999999999999999999999988877
Q ss_pred EEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHHHh
Q 006701 483 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLM 561 (634)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~ 561 (634)
.+....... +..++.|+|.|+|+||+++.++++|+||++.+...+ ..+|+||||++||++++.|
T Consensus 432 ~v~~~~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~ 496 (919)
T PRK11107 432 LVELRALSN---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEM 496 (919)
T ss_pred EEEEEecCC---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHh
Confidence 766543221 223589999999999999999999999998765533 3459999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006701 562 GGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 562 gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
||+|+++|. +|+||+|+|.||+...+.+.. .+.+...+.|.+||++||++.+|..++.
T Consensus 497 gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~~~~~~~~l~~ 554 (919)
T PRK11107 497 GGDISFHSQ-PNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEPNSAAAQATLD 554 (919)
T ss_pred CCEEEEEec-CCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeCCHHHHHHHHH
Confidence 999999999 899999999999865433211 1122334678999999999999987543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.8e-34 Score=301.58 Aligned_cols=241 Identities=23% Similarity=0.386 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-------PEQRVMIETVLKSSNLLTTL 395 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~l 395 (634)
+.+....++++++++++..+.+++|++.++||+||||++|.+.++++.....+ +..+++++.+.+.++++..+
T Consensus 130 l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 209 (380)
T PRK09303 130 LSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERL 209 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555666666777899999999999999999999999999854322 33677889999999999999
Q ss_pred HHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC
Q 006701 396 VDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT 475 (634)
Q Consensus 396 i~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~ 475 (634)
+++++++++.+.+...+..+++++.+++++++..+...+..+++.+.++++.+.+. +.+|+..+.||+.||++||++|+
T Consensus 210 i~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~ 288 (380)
T PRK09303 210 ITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYT 288 (380)
T ss_pred HHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888888889999999999999999999999999999988777664 77899999999999999999999
Q ss_pred CCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHH
Q 006701 476 KEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAIC 554 (634)
Q Consensus 476 ~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~ 554 (634)
++| .+.+.+....++ ++.|.|.|||+||+++..+++|+|||+++. .....|+||||+||
T Consensus 289 ~~~~~I~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~ 348 (380)
T PRK09303 289 PEGGTITLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVC 348 (380)
T ss_pred CCCceEEEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHH
Confidence 864 455544333322 489999999999999999999999999876 33456999999999
Q ss_pred HHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006701 555 RRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 555 k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
+++++.|||+|+++|. +++|++|+|++|+.
T Consensus 349 ~~iv~~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 349 RRIVRVHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HHHHHHcCCEEEEEec-CCCccEEEEEEecC
Confidence 9999999999999999 89999999999974
No 14
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-32 Score=277.54 Aligned_cols=390 Identities=23% Similarity=0.339 Sum_probs=265.3
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccccccccccc-CChhhHHHhccC
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSA 221 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 221 (634)
......+.+.++...|..+.|-.--..+..+++++.+++|+-+. .... |...|. .-..+-+++.+.
T Consensus 327 ~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~----~~~v---------G~tP~~~~v~~Ll~wl~~~ 393 (750)
T COG4251 327 TEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGR----WHLV---------GETPPRPAVQRLLQWLAER 393 (750)
T ss_pred HHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCE----EEEe---------cCCCChHHHHHHHHHHhcC
Confidence 34455666777778888888888888899999999999987542 1111 111111 112233344333
Q ss_pred CeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCc----------cccCCCCcccccceE---EEEEecC------
Q 006701 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNF----------QINDWPELPAKSYAV---MVLMLPT------ 282 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~----------~~~~~~~l~~~~~~~---~vl~~~~------ 282 (634)
..-.+-..++....-..+..|.+-..-.+.+|+...... +...|-.=+...|.. ++.+.+.
T Consensus 394 ~~~~vf~TdsL~q~yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~~~~rL~PRkSFe~W 473 (750)
T COG4251 394 EEGDVFATDSLSQVYPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRLTPRKSFELW 473 (750)
T ss_pred CcccEEeeccccccCcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCCCCcccCCcccHHHH
Confidence 333222222222222222233322222333444221110 001110000000100 1222221
Q ss_pred -----CCCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006701 283 -----DGGRKWRDHELELIDVVADQ-VAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMR 356 (634)
Q Consensus 283 -----~~~~~~~~~e~~ll~~~a~~-~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr 356 (634)
.....|++.|++....+-.- +.+.+ ++.+++.+.+.++++.+...++|.+.++|++|
T Consensus 474 kE~vRl~s~PWs~~ei~~A~~LR~aiv~ivl-----------------~~aeela~l~r~lersn~el~~f~yv~sHdlq 536 (750)
T COG4251 474 KETVRLQSQPWSEVEIEAALELRKAIVGIVL-----------------RHAEELAQLRRELERSNAELRAFAYVASHDLQ 536 (750)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhh
Confidence 11247888877654443322 22222 22334444556667777778899999999999
Q ss_pred hHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHh
Q 006701 357 TLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPV 433 (634)
Q Consensus 357 ~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~ 433 (634)
+||+.|.+++++|.++ ..+++.++++..+.+.+.++.+++++++.++++.....++ ++.++..+++++...+...
T Consensus 537 ePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l--~~td~~~vv~~vl~~l~~r 614 (750)
T COG4251 537 EPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPL--QPTDVQKVVDKVLLELSQR 614 (750)
T ss_pred HHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--CCcchHHHHHHHHHhcccc
Confidence 9999999999999864 6788999999999999999999999999999987665544 4889999999999999988
Q ss_pred hhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEE
Q 006701 434 ASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRV 513 (634)
Q Consensus 434 ~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 513 (634)
....++.+.+ .+ +|. +.+|+.++.|+++||+.||+||..++...+.+..+..+. .+.+
T Consensus 615 i~dtgaei~i--~~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed------------------~~t~ 672 (750)
T COG4251 615 IADTGAEIRI--AP-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQED------------------EWTF 672 (750)
T ss_pred cccccceEEe--cc-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeeccCC------------------ceEE
Confidence 8888877776 34 665 778999999999999999999997764444444333221 2899
Q ss_pred EEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006701 514 QVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 514 ~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
.|.|||.||++...++||..|.+.+... +..|+|+||+|||+|++.|+|+|+++|. +|+|+||.|++|.....
T Consensus 673 sV~dng~Gi~~a~~~riF~iFqRl~s~~-~y~gtG~GL~I~kkI~e~H~G~i~vEs~-~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 673 SVRDNGIGIDPAYFERIFVIFQRLHSRD-EYLGTGLGLAICKKIAERHQGRIWVEST-PGEGSTFYFTLPVGGEE 745 (750)
T ss_pred EecCCCCCcCHHHHHHHHHHHHhcCchh-hhcCCCccHHHHHHHHHHhCceEEEeec-CCCceeEEEEeecCCcC
Confidence 9999999999999999999998877654 4568999999999999999999999999 99999999999986554
No 15
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=5.8e-33 Score=334.34 Aligned_cols=275 Identities=24% Similarity=0.374 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 006701 332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
++++++.+..+.+++|++.++||+||||++|.++++++.....+++ ..+.++.+..+++++..++++++++++++.+..
T Consensus 700 ~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~ 779 (1197)
T PRK09959 700 VERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNY 779 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3444445556678899999999999999999999999876544444 457888999999999999999999999999888
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCC
Q 006701 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~ 490 (634)
.+..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+..+.||+.||++||+||++.|.+.+.+......
T Consensus 780 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~ 859 (1197)
T PRK09959 780 QLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHID 859 (1197)
T ss_pred eeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeeec
Confidence 88889999999999999999999988999888765544444578899999999999999999999988776665433211
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006701 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.+...+.|+|.|||+||+++..+++|+||++++... ..+|+||||+|||++++.|||+|+++|.
T Consensus 860 ---------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i~~~iv~~~gG~i~v~s~ 923 (1197)
T PRK09959 860 ---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMICKELIKNMQGDLSLESH 923 (1197)
T ss_pred ---------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHHHHHHHHHcCCEEEEEeC
Confidence 112248899999999999999999999999876543 3459999999999999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006701 571 GLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 571 ~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+|+||+|++.||+............ .. .+.......+||||||++.+|..++
T Consensus 924 -~~~Gt~f~i~lP~~~~~~~~~~~~~----~~--~~~~~~~~~~iLivdd~~~~~~~l~ 975 (1197)
T PRK09959 924 -PGIGTTFTITIPVEISQQVATVEAK----AE--QPITLPEKLSILIADDHPTNRLLLK 975 (1197)
T ss_pred -CCCcEEEEEEEEccccchhcccccc----cc--cccccccCceEEEcCCCHHHHHHHH
Confidence 8999999999998654322111110 00 1111124579999999999998754
No 16
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=1.3e-29 Score=271.95 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
+.+|++.++||+||||++|.++++++.+.. .++...++++.+.++++++..++++++++++.+.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 457999999999999999999999988654 3455677899999999999999999999999887766556678899999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~~~~~ 501 (634)
++.+...+.... .+++.+.+..+++. .+.+|+..+.|++.||++||+||++++. +.+.+...++
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~------------ 348 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ------------ 348 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC------------
Confidence 888877776654 56777887775554 3678999999999999999999998654 4444433222
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006701 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.|+|.|||+||+++..+++|+|||+.+...+ ..+|+|+||++||++++.|||+|+++|. +|+||+|++
T Consensus 349 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f~i 419 (430)
T PRK11006 349 --------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRFSF 419 (430)
T ss_pred --------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEEEE
Confidence 389999999999999999999999998766533 3359999999999999999999999999 899999999
Q ss_pred EEEecC
Q 006701 581 LVKLGI 586 (634)
Q Consensus 581 ~lp~~~ 586 (634)
.||...
T Consensus 420 ~lP~~~ 425 (430)
T PRK11006 420 VLPERL 425 (430)
T ss_pred EechHh
Confidence 999643
No 17
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-30 Score=266.25 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSL---LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
..+++.++++||+++||++|.++.+. +.+....++..+-+..|..-++||..+..+|..|++..... .+++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 57899999999999999999988664 45667788889999999999999999999999999976443 458999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCC
Q 006701 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWR 496 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~---~g~i~i~~~~~~~~~~~~~~ 496 (634)
.+.++++...+....+..+..+....++ .+.+|.+++.+|+||+.|||.||+++.. ++.+.+.....++
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~------- 530 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGG------- 530 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCC-------
Confidence 9999999999999988888888876543 3567999999999999999999999975 3556666555443
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006701 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
.+.|+|+|||+||+++...++|+||||+|+.+ +|.||||+|++.|++.+||+|++.+. ++.|+
T Consensus 531 -------------~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~---~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~Ga 593 (603)
T COG4191 531 -------------QVVLTVRDNGPGIAPEALPHLFEPFFTTKPVG---KGLGLGLAISQNIARDLGGSLEVANH-PEGGA 593 (603)
T ss_pred -------------eEEEEEccCCCCCCHHHHHhhcCCccccCccc---CCcchhHHHHHHHHHHhCCeEEeecC-CCCce
Confidence 39999999999999999999999999999764 69999999999999999999999997 89999
Q ss_pred EEEEEEEe
Q 006701 577 TVTFLVKL 584 (634)
Q Consensus 577 ~f~i~lp~ 584 (634)
.|+++||.
T Consensus 594 ~F~i~L~~ 601 (603)
T COG4191 594 SFTIELRR 601 (603)
T ss_pred EEEEEeec
Confidence 99999984
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=1.6e-29 Score=270.79 Aligned_cols=232 Identities=21% Similarity=0.287 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 325 EQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (634)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 404 (634)
+....+.++.+++++..+.+++|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.+++
T Consensus 193 ~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~~r 267 (433)
T PRK10604 193 RLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTYAR 267 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666777777778899999999999999999999888876332 2222 2378889999999999999999
Q ss_pred hhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEE
Q 006701 405 LEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA 484 (634)
Q Consensus 405 ~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~ 484 (634)
++.+......+.+++.+++++++..++.....+++.+.+ +.. +..+.+|+..+.+++.||++||++|++ +.+.+.+
T Consensus 268 l~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~ 343 (433)
T PRK10604 268 LDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSL 343 (433)
T ss_pred ccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEE
Confidence 998888888889999999999999988776666665554 333 233567999999999999999999985 6677776
Q ss_pred EeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCC-CCCccccHHHHHHHHHHhCC
Q 006701 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGG 563 (634)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG 563 (634)
...++ .+.|.|+|||+||+++..+++|+||++.+..... .+|.|+||++||++++.|||
T Consensus 344 ~~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG 403 (433)
T PRK10604 344 LLDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGG 403 (433)
T ss_pred EEECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCC
Confidence 65543 3899999999999999999999999997665433 35899999999999999999
Q ss_pred EEEEEecCCCCceEEEEEEEecC
Q 006701 564 HIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 564 ~i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
++++++. +++|++|++.+|...
T Consensus 404 ~i~v~s~-~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 404 SVNCDES-ELGGARFSFSWPVWH 425 (433)
T ss_pred EEEEEec-CCCeeEEEEEEeCCC
Confidence 9999998 899999999999864
No 19
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=2e-27 Score=257.13 Aligned_cols=214 Identities=25% Similarity=0.423 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHH
Q 006701 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 420 (634)
...+++.+.++||+||||++|.++++++.+.. ..++.++.++.+.+.++++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34678999999999999999999999987643 345667788899999999999999999998743 3456689999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCC
Q 006701 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~ 499 (634)
++++++...+...+..+++.+.++.++..+. +..|+..+.+++.||++||+||+.+ +.+.+.+...++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLPE-IQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCce-EEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 9999999999999999999999987765554 5679999999999999999999765 556666554433
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006701 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|.|+|||+||+++..+++|++|++++. .|+|+||++||++++.|||+++++|. +++||+|+
T Consensus 380 ----------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-----~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f~ 443 (457)
T PRK10364 380 ----------GVKISVTDSGKGIAADQLEAIFTPYFTTKA-----EGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATFT 443 (457)
T ss_pred ----------eEEEEEEECCCCCCHHHHHHHhCccccCCC-----CCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEEE
Confidence 399999999999999999999999997663 48899999999999999999999998 89999999
Q ss_pred EEEEecC
Q 006701 580 FLVKLGI 586 (634)
Q Consensus 580 i~lp~~~ 586 (634)
+.||...
T Consensus 444 i~lP~~~ 450 (457)
T PRK10364 444 LWLPVNI 450 (457)
T ss_pred EEecCCC
Confidence 9999853
No 20
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=2.3e-29 Score=275.40 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHH
Q 006701 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 421 (634)
+...+++..++|++||||+.|.++++++.....+.......+.+.+....+...++.+.++... .......++|+..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIPQ---SPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcccccccccHHH
Confidence 3456678888899999999999999998865333333334444444555555555555544321 2234456899999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---EEEEEEeecCCCCCCCCCC
Q 006701 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~---i~i~~~~~~~~~~~~~~~~ 498 (634)
++++++..+...+..+++.+.+..+...+. +.+|+.++.||+.||+.||+||++.+. ..+.+.....+.
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~------- 422 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD------- 422 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC-------
Confidence 999999999888888999999887766664 678999999999999999999986652 223333222211
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006701 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|||+|||++...++|+||++++... .+|+||||++||.+++.|||+|+++|. +|+||+|
T Consensus 423 -----------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G~~f 488 (494)
T TIGR02938 423 -----------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLSVAQEIVADHGGIIDLDDD-YSEGCRI 488 (494)
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHHHHHHHHHHcCCEEEEEEC-CCCCEEE
Confidence 48999999999999999999999999988653 469999999999999999999999999 9999999
Q ss_pred EEEEEe
Q 006701 579 TFLVKL 584 (634)
Q Consensus 579 ~i~lp~ 584 (634)
+|+||+
T Consensus 489 ~i~lp~ 494 (494)
T TIGR02938 489 IVEFRV 494 (494)
T ss_pred EEEecC
Confidence 999995
No 21
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-29 Score=236.42 Aligned_cols=222 Identities=25% Similarity=0.336 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHH
Q 006701 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 421 (634)
++.+.++++++||+||||..|.|.+++|.....++..+++.+.|.+.++|+.++++.+.-++.- .+....+++++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchHHH
Confidence 3466789999999999999999999999988777778999999999999999999999666542 244555889999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---C--CcEEEEEEeecCCCCCCCC
Q 006701 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---E--GYVSIIASVAKPESLSDWR 496 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~---~--g~i~i~~~~~~~~~~~~~~ 496 (634)
+++.+....+..+ ..++.+.-+.++++|. +.+|+++|.|++.||+.||+.+.. . |.++++.+..-.-
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 9999999887665 5788888889999998 678999999999999999999875 2 5555544221110
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006701 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
+.........+.++|.|||+|+|++..+.+|.||.+++. +|+||||+++++++..|||.|+++|. | +.|
T Consensus 278 ----~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~-----~GsGLGLala~~li~qH~G~Ie~~S~-P-g~T 346 (363)
T COG3852 278 ----TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE-----GGTGLGLALAQNLIDQHGGKIEFDSW-P-GRT 346 (363)
T ss_pred ----EccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----CCccccHHHHHHHHHhcCCEEEEecc-C-Cce
Confidence 011111222367889999999999999999999998875 48999999999999999999999998 5 589
Q ss_pred EEEEEEEecC
Q 006701 577 TVTFLVKLGI 586 (634)
Q Consensus 577 ~f~i~lp~~~ 586 (634)
+|++.+|+..
T Consensus 347 ~FrvllP~~~ 356 (363)
T COG3852 347 VFRVLLPIRK 356 (363)
T ss_pred EEEEEeeccc
Confidence 9999999876
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=9.1e-29 Score=267.29 Aligned_cols=230 Identities=18% Similarity=0.268 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006701 328 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (634)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 407 (634)
..+.+..++.++..+..++|++.++||+||||+.|.+.++.+...... ...+....+.+..+++..+++++++.++...
T Consensus 250 ~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~ 328 (485)
T PRK10815 250 RNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRS 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444455555677899999999999999999999998765321 1223345677888999999999999999888
Q ss_pred CCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEee
Q 006701 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA 487 (634)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~ 487 (634)
+...+..+.+++..+++++...+......+++.+.++.+++. .+.+|+..+.+++.||+.||++|+.. .+.+.+...
T Consensus 329 ~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~ 405 (485)
T PRK10815 329 EHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT 405 (485)
T ss_pred CCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe
Confidence 777778889999999999999999988889999988776543 36689999999999999999999965 455555443
Q ss_pred cCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEE
Q 006701 488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWL 567 (634)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v 567 (634)
++ .+.|.|.|+|+||+++..+++|+||++.+.. .+|+|+||++|+++++.|||+|++
T Consensus 406 ~~--------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~---~~G~GLGL~Ivk~iv~~~gG~i~v 462 (485)
T PRK10815 406 DE--------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL---RPGQGLGLSVAREITEQYEGKISA 462 (485)
T ss_pred CC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC---CCCcchhHHHHHHHHHHcCCEEEE
Confidence 32 3899999999999999999999999986543 258999999999999999999999
Q ss_pred EecCCCCceEEEEEEEec
Q 006701 568 DSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 568 ~s~~~g~Gt~f~i~lp~~ 585 (634)
+|. +++||+|++.||.+
T Consensus 463 ~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 463 GDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred EEC-CCCEEEEEEEEcCC
Confidence 999 89999999999964
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.96 E-value=1.5e-27 Score=249.69 Aligned_cols=212 Identities=20% Similarity=0.249 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH-HHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL-QIV 422 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l-~~l 422 (634)
.+.|.+.++||+||||+.+.+.++.+..... + ..+.+.+..+++...+++++.+++............+++ .++
T Consensus 137 ~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~ 211 (356)
T PRK10755 137 ERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDV 211 (356)
T ss_pred HHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHH
Confidence 4568999999999999999999988765422 2 234455677889999999999999766555555667888 888
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~ 501 (634)
+..+...+......+++.+.+...+ .+..+.+|+..+.+++.||++||+||++.+ .+.+.+...++
T Consensus 212 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~------------ 278 (356)
T PRK10755 212 ILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG------------ 278 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC------------
Confidence 9988888888888888887774323 344578899999999999999999999754 45555543322
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCC-CceEEEE
Q 006701 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD-KGSTVTF 580 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g-~Gt~f~i 580 (634)
.+.|+|+|||+||+++..+++|++|++.+. ..+|+|+||++|+++++.|||+++++|. ++ +||+|++
T Consensus 279 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~~i 346 (356)
T PRK10755 279 --------GAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRAWV 346 (356)
T ss_pred --------EEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEEEE
Confidence 389999999999999999999999997653 2358999999999999999999999998 77 9999999
Q ss_pred EEEec
Q 006701 581 LVKLG 585 (634)
Q Consensus 581 ~lp~~ 585 (634)
.||..
T Consensus 347 ~~p~~ 351 (356)
T PRK10755 347 WLPKA 351 (356)
T ss_pred EecCC
Confidence 99963
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.96 E-value=3e-27 Score=256.81 Aligned_cols=241 Identities=26% Similarity=0.353 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+....++++..++++..+.+.++++.++||++|||+.+.+.++.+.+... +...+.+..+...++++..+++++..
T Consensus 218 E~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~ 296 (466)
T PRK10549 218 ELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQ 296 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666777777778899999999999999999999999876532 22345678888899999999999999
Q ss_pred HHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cE
Q 006701 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YV 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i 480 (634)
+++.+.+...+..+.+++.+++++++..++.....+++.+.++.++.. .+.+|+..+.|++.||+.||++|++++ .+
T Consensus 297 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I 374 (466)
T PRK10549 297 LSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSL 374 (466)
T ss_pred HHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999888888888899999999999999999888888898888775543 356799999999999999999999764 55
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHH
Q 006701 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|.|.|||+||+++.++++|+||++.+.... ...|+|+||++|+++++
T Consensus 375 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 375 HISAEQRDK--------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred EEEEEEcCC--------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHH
Confidence 555544332 389999999999999999999999999876543 23589999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEecC
Q 006701 560 LMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 560 ~~gG~i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
.|||+++++|. +++||+|++.||+..
T Consensus 435 ~~~G~l~~~s~-~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 435 AHNGRIIAAHS-PFGGVSITVELPLER 460 (466)
T ss_pred HcCCEEEEEEC-CCCeEEEEEEccCCC
Confidence 99999999998 899999999999753
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.96 E-value=2.8e-27 Score=265.71 Aligned_cols=238 Identities=18% Similarity=0.269 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+..+.++++..++++..+....+++.++||+|||++.|.+.++.+.....+++..++++.+.+.++++..+++++..
T Consensus 463 EIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~ 542 (703)
T TIGR03785 463 EIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSE 542 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666777777788899999999999999999999999987777778888999999999999999999999
Q ss_pred HHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-E
Q 006701 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-V 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i 480 (634)
+++++........+.+++.+++++++..++.....+++.+.+. .+ +..+.+|+..+.+++.||+.||+||++++. +
T Consensus 543 ~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I 619 (703)
T TIGR03785 543 ATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ET-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLI 619 (703)
T ss_pred HHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeE
Confidence 9998877667777899999999999999988877766666553 33 235778999999999999999999997644 4
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCC-CCccccHHHHHHHHH
Q 006701 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|+|.|+|+||+++..+++|+||++.+...... +|+||||++||++++
T Consensus 620 ~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 620 EVGLSQNKS--------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred EEEEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHH
Confidence 454443322 38999999999999999999999999877544333 489999999999999
Q ss_pred HhCCEEEEEecCCC-CceEEEEEEE
Q 006701 560 LMGGHIWLDSEGLD-KGSTVTFLVK 583 (634)
Q Consensus 560 ~~gG~i~v~s~~~g-~Gt~f~i~lp 583 (634)
.|||+|++++. ++ +|++|+++||
T Consensus 680 ~~gG~I~v~s~-~~g~Gt~f~I~LP 703 (703)
T TIGR03785 680 FHQGRIQAENR-QQNDGVVFRISLP 703 (703)
T ss_pred HcCCEEEEEEC-CCCCeEEEEEEeC
Confidence 99999999998 54 7999999997
No 26
>PRK13557 histidine kinase; Provisional
Probab=99.95 E-value=2e-26 Score=255.20 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceee
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
....++..++||++|||+.|.++++++.+. .......+.++.+.+.++++..++++++.+++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 356788999999999999999999987642 1234566788999999999999999999998743 3455678
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCC
Q 006701 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWR 496 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~ 496 (634)
++..+++.+...+... ..+++.+.+...+..+. +..|+..+.+++.||+.||++|++.+. +.+.......... .
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---~ 312 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---D 312 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc---c
Confidence 9999998887766543 34667777766666554 566999999999999999999987644 3333332211100 0
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006701 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
.... ........+.|+|.|||+||+++..+++|+||++++.. ..|+|+||++||++++.|||+|+++|. +|+||
T Consensus 313 ~~~~--~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~---~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~ 386 (540)
T PRK13557 313 LAMY--HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE---GKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGT 386 (540)
T ss_pred cccc--cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---CCCCCccHHHHHHHHHHCCCEEEEEec-CCCce
Confidence 0000 00011235889999999999999999999999987653 358999999999999999999999999 89999
Q ss_pred EEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006701 577 TVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 577 ~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+|+++||........++. ..........+++||||||++..+..++
T Consensus 387 ~f~i~lP~~~~~~~~~~~-------~~~~~~~~~~~~~iliv~~~~~~~~~l~ 432 (540)
T PRK13557 387 TVRLYFPASDQAENPEQE-------PKARAIDRGGTETILIVDDRPDVAELAR 432 (540)
T ss_pred EEEEEeeCCCCccCCCCC-------CCCcccccCCCceEEEEcCcHHHHHHHH
Confidence 999999985443322111 1111123346789999999998877643
No 27
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.95 E-value=1.9e-26 Score=249.95 Aligned_cols=237 Identities=25% Similarity=0.410 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDV 399 (634)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 399 (634)
.++.+....+.++.+++++..+...++...++||+||||+.+.+..+.+.... ..++..+.++.+....+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777777777778889999999999999999999988876543 33455677888888899999999999
Q ss_pred HHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-C
Q 006701 400 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-G 478 (634)
Q Consensus 400 l~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g 478 (634)
+.+++.+........+++++.++++++.+.+...+..+++.+.++ .+ ..+.+|+..+.+++.|+++||+||++. +
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999888778888899999999999999988888888776654 32 347789999999999999999999976 4
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHH
Q 006701 479 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRF 557 (634)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~i 557 (634)
.+.+.+...++ .+.|+|.|+|+|||++..+++|++||+++...+ ...|+|+||++|+++
T Consensus 374 ~I~i~~~~~~~--------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 374 TITVRIERRSD--------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred eEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 56665554332 389999999999999999999999999876532 345899999999999
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 558 VNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 558 v~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
+++|||++++++ +++||+|++.||
T Consensus 434 ~~~~~G~~~~~~--~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES--PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe--CCCceEEEEecC
Confidence 999999999999 488999999997
No 28
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=2.9e-25 Score=226.90 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceee
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET---DLT---PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~---~~~---~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
-++-+..++||+||||+-|...++.+... ..+ +..++..+.|.+++..+.++++++..|+|+. +++++..
T Consensus 486 W~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~ 561 (712)
T COG5000 486 WGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKS 561 (712)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcc
Confidence 45667779999999999999999988753 222 3346788999999999999999999999976 5666799
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC------CcEEEEEEeecCCC
Q 006701 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE------GYVSIIASVAKPES 491 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~------g~i~i~~~~~~~~~ 491 (634)
||+++++++....+.. ...+.+..+...+ |.+...|+..+.|++.|++.||.++..+ +.-.+.++....++
T Consensus 562 dL~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g 638 (712)
T COG5000 562 DLRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG 638 (712)
T ss_pred hHHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC
Confidence 9999999999988743 4577788877666 7778889999999999999999998532 11123333332221
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecC
Q 006701 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEG 571 (634)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 571 (634)
.+.+.|.|||.|+|.+...++|+||.+++. +||||||+|+|+|+|.|||.+++...+
T Consensus 639 ------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~-----KGTGLGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 639 ------------------RIVVDVIDNGKGFPRENRHRALEPYVTTRE-----KGTGLGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred ------------------eEEEEEecCCCCCChHHhhhhccCceeccc-----ccccccHHHHHHHHHhcCCeEEecCCC
Confidence 499999999999999999999999999874 589999999999999999999999873
Q ss_pred CCCceEEEEEEEe
Q 006701 572 LDKGSTVTFLVKL 584 (634)
Q Consensus 572 ~g~Gt~f~i~lp~ 584 (634)
.-.|..+.+.||.
T Consensus 696 d~~GA~i~i~fp~ 708 (712)
T COG5000 696 DFDGAMIRIKFPL 708 (712)
T ss_pred CCCCcEEEEEccc
Confidence 3459999999996
No 29
>PRK09835 sensor kinase CusS; Provisional
Probab=99.95 E-value=3.8e-26 Score=249.34 Aligned_cols=238 Identities=20% Similarity=0.358 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVL 400 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll 400 (634)
++.+....+.++.+++++..+.+.+|++.++||++||++.+.+..+.+.... ...+..+.+..+.+...++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666667777777889999999999999999999888776543 334455677778888899999999999
Q ss_pred HHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-
Q 006701 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (634)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~- 479 (634)
++++.+.+...+...++++.++++++...++.....+++.+.+.. + +..+.+|+..+.+++.|++.||++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999998887777788999999999999999988878888777642 2 334778999999999999999999997654
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHH
Q 006701 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFV 558 (634)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv 558 (634)
+.+.+...++ .+.|+|.|+|+|++++..+++|+||++.+.... ...|+|+||++|++++
T Consensus 397 I~i~~~~~~~--------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~ 456 (482)
T PRK09835 397 ITVRCQEVDH--------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIV 456 (482)
T ss_pred EEEEEEEeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHH
Confidence 5565544333 389999999999999999999999999865543 2359999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 559 NLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 559 ~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
+.|||+|+++|. ++||+|++.||.
T Consensus 457 ~~~~g~i~~~s~--~~g~~~~i~lP~ 480 (482)
T PRK09835 457 VAHKGTVAVTSD--ARGTRFVISLPR 480 (482)
T ss_pred HHCCCEEEEEEC--CCcEEEEEEeeC
Confidence 999999999997 469999999995
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=5.2e-26 Score=246.83 Aligned_cols=238 Identities=22% Similarity=0.319 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (634)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 400 (634)
+++.+....+.+..+++++..+.+.+|.+.++||++|||+.+.+..+++....... ..+..+.+..+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777778889999999999999999999888876543222 246678889999999999999
Q ss_pred HHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcE
Q 006701 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (634)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i 480 (634)
.+++.+.. .....+.+++..+++++++.+.......++.+.++..++ +..+.+|+..+.+++.||++||++|++ +.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997654 356677899999999999988877777888888864333 445778999999999999999999996 556
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCC-CCCccccHHHHHHHHH
Q 006701 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|+|.|||+||+++..+++|+||++.+....+ ..|+|+||++|+++++
T Consensus 374 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 374 EVAFSVDKD--------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred EEEEEEECC--------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHH
Confidence 666655433 3899999999999999999999999987654433 3489999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEec
Q 006701 560 LMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 560 ~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
.|||++.++|. +++||+|++.+|+.
T Consensus 434 ~~~G~l~~~s~-~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 434 QHRGWVKAEDS-PLGGLRLTIWLPLY 458 (461)
T ss_pred HCCCEEEEEEC-CCCeEEEEEEeeCC
Confidence 99999999998 89999999999974
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=4.5e-26 Score=246.34 Aligned_cols=232 Identities=21% Similarity=0.303 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
+.+....+.+...++++..+..++|++.++||+|||++.+.+..+.+.....+++ ...++..+...++++..++++++.
T Consensus 216 i~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~ 295 (449)
T PRK10337 216 VRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLT 295 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666667777777889999999999999999998887765443443 456888999999999999999999
Q ss_pred HHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-E
Q 006701 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-V 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i 480 (634)
+++.+........+++++.+++++++..+...+..+++.+.++.++.. ..+.+|+..+.+++.||+.||+||++++. +
T Consensus 296 ~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i 374 (449)
T PRK10337 296 LSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGSVV 374 (449)
T ss_pred HHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 999877655556778999999999999998888889999998875443 34678999999999999999999998653 3
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHH
Q 006701 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL 560 (634)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~ 560 (634)
.+.... ..++|+|||+||++++.+++|+||++.+.. ..+|+|+||++|++++++
T Consensus 375 ~i~~~~------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~iv~~i~~~ 428 (449)
T PRK10337 375 DVTLNA------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSIVRRIAKL 428 (449)
T ss_pred EEEEEe------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHHHHHHHHH
Confidence 333321 358999999999999999999999986432 345899999999999999
Q ss_pred hCCEEEEEecCCCCceEEEEEE
Q 006701 561 MGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 561 ~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
|||+++++|. +++|++|++.|
T Consensus 429 ~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 429 HGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred cCCEEEEEec-CCCeEEEEEeC
Confidence 9999999998 89999998864
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=3.3e-26 Score=236.99 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 421 (634)
+..|.+.++||++|||+.|.++++.+... ..+++..++++.+.+.++++..+++++.++++.+.+......+++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 44688999999999999999999988754 3455667889999999999999999999999988777777888999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCC
Q 006701 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~ 500 (634)
++..+...+......+++.+.+..+ . +..+.+|+..+.+++.||+.||++|++.+ .+.+.+...++
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~----------- 260 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG----------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC-----------
Confidence 9999999999998888899988773 2 34577899999999999999999998754 44444443322
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006701 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|.|.|+|+||+++..+++|+||++.+.... ...|+|+||++|+.+++.|||+++++|. +++||+|+
T Consensus 261 ---------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~~~ 330 (333)
T TIGR02966 261 ---------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGSTFS 330 (333)
T ss_pred ---------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeEEE
Confidence 389999999999999999999999998655432 3458999999999999999999999999 89999999
Q ss_pred EEE
Q 006701 580 FLV 582 (634)
Q Consensus 580 i~l 582 (634)
++|
T Consensus 331 i~l 333 (333)
T TIGR02966 331 FIF 333 (333)
T ss_pred EEC
Confidence 875
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=6.8e-26 Score=246.87 Aligned_cols=233 Identities=26% Similarity=0.391 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006701 328 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (634)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 407 (634)
..++++..++++. +...++.+.++||++||++.+.+.++.+.+....++..++++.+...++++..++++++.+++.+.
T Consensus 241 ~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 319 (475)
T PRK11100 241 QALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQ 319 (475)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444444332 235678899999999999999999999887655667788999999999999999999999999887
Q ss_pred CCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEe
Q 006701 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASV 486 (634)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~ 486 (634)
.........+++.++++++...+......+++.+.+..+ +..+.+|...+.+++.|++.||++|+.+ +.+.+.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~ 396 (475)
T PRK11100 320 RQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEV 396 (475)
T ss_pred CCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 766667789999999999999999888889988888664 3346779999999999999999999965 566666654
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEE
Q 006701 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 566 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 566 (634)
.++ .+.++|+|||.||+++.++++|++|++.+.......|+|+||++|++++++|||+++
T Consensus 397 ~~~--------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~~~~G~i~ 456 (475)
T PRK11100 397 DGE--------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVT 456 (475)
T ss_pred cCC--------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHCCCEEE
Confidence 433 389999999999999999999999998765444456899999999999999999999
Q ss_pred EEecCCCCceEEEEEEEec
Q 006701 567 LDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 567 v~s~~~g~Gt~f~i~lp~~ 585 (634)
++|. +++||+|.+.+|..
T Consensus 457 i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 457 LRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred EEEc-CCCeEEEEEEeeCC
Confidence 9998 89999999999964
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=6.3e-26 Score=236.72 Aligned_cols=217 Identities=22% Similarity=0.321 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
..+.|++.++||+||||++|.++++++.+...+++.+++++.+.+.++++..++++++.+.+.. .....++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 3568999999999999999999999988766677788999999999999999999998765432 2346789999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-C-CCcEEEEEEeecCCCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-K-EGYVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~-~-~g~i~i~~~~~~~~~~~~~~~~~~ 500 (634)
++.+...+.... .+++.+.++.+++.+. +.+|+..+.+++.||++||++|+ + .+.+.+.........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 998888777554 4567777777666554 66799999999999999999997 3 344444332211100
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006701 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.........+.+.|.|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +| ||+|++
T Consensus 272 -~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-----~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f~i 343 (348)
T PRK11073 272 -LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEFSV 343 (348)
T ss_pred -cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-----CCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEEEE
Confidence 00000111368999999999999999999999998663 48899999999999999999999998 66 599999
Q ss_pred EEEe
Q 006701 581 LVKL 584 (634)
Q Consensus 581 ~lp~ 584 (634)
.||+
T Consensus 344 ~lP~ 347 (348)
T PRK11073 344 YLPI 347 (348)
T ss_pred EEec
Confidence 9996
No 35
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=6.2e-26 Score=244.26 Aligned_cols=228 Identities=20% Similarity=0.332 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+..+.++++.+++++..+.+..|+++++||+||||+.+.+.++++.++ .....+.+.+..+++..+++++++
T Consensus 207 Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~ 281 (435)
T PRK09467 207 EVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFID 281 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777788889999999999999999999888776432 223446778889999999999999
Q ss_pred HHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEE
Q 006701 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~ 481 (634)
+.+.... ....++++.+++++++.... ..+..+.++.+.. +..+.+|+..+.+++.||++||+||+ .+.+.
T Consensus 282 ~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~ 352 (435)
T PRK09467 282 YLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIK 352 (435)
T ss_pred HhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEE
Confidence 9886543 34568899999999887654 3455566655444 33577899999999999999999998 46666
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHh
Q 006701 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLM 561 (634)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~ 561 (634)
+.....++ .+.|+|.|+|+||+++..+++|+||++.+... ...|+|+||++|+++++.|
T Consensus 353 i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-~~~g~GlGL~iv~~i~~~~ 411 (435)
T PRK09467 353 VSSGTEGK--------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-GSSGTGLGLAIVKRIVDQH 411 (435)
T ss_pred EEEEecCC--------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-CCCCeehhHHHHHHHHHHC
Confidence 66654432 38999999999999999999999999866543 2368999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEec
Q 006701 562 GGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 562 gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
||++.+++. +++|++|++.+|+.
T Consensus 412 ~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 412 NGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred CCEEEEEEC-CCCcEEEEEEEeCC
Confidence 999999998 89999999999974
No 36
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.95 E-value=4.1e-23 Score=229.19 Aligned_cols=357 Identities=14% Similarity=0.119 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc
Q 006701 123 KNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (634)
.++.++.+++...++++++.+..++..++.+..+.+..+.+..+++++.+.++++.+.+.+.+.....-.........
T Consensus 199 ~~l~~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 276 (569)
T PRK10600 199 AVLEQRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSD-- 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCc--
Confidence 344555566666788888889999999999999999999999999999999999999987765433321111111000
Q ss_pred cccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC
Q 006701 203 IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (634)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (634)
.......+..+... ..........+.+|+. .+...+|++....
T Consensus 277 ----~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~--------------~~~~~~G~~~~~~ 319 (569)
T PRK10600 277 ----MTCDDKGCQLCPRG-------------------VLPVGDRGTTLKWRLS--------------DKHGQYGILLATL 319 (569)
T ss_pred ----cCcccccccccccc-------------------CCCcCCCCceEEEEee--------------cCCcceEEEEEEc
Confidence 00000000000000 0000001223344443 3334567666555
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006701 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I 362 (634)
..+..+++++..+++.++.+++.++...+...+ .++ ....+.+..++..++|.+.++|+.+
T Consensus 320 ~~~~~l~~~~~~ll~~l~~~l~~~l~~~~~~~~-----------~~~--------~~~~~er~~iarelhd~i~~~L~~l 380 (569)
T PRK10600 320 PQGRHLSHDQQQLVDTLVEQLTATLALERQQER-----------QQQ--------LIVMEERATIARELHDSIAQSLSCM 380 (569)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH--------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 556689999999999999999887754422110 000 0111224557777888888888888
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCce
Q 006701 363 IALSSLLLE--TDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (634)
Q Consensus 363 ~~~~~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (634)
...+..+.. ...+++.++.++.+.+.++++...+++++...+. .....++.+.+++++..+.... ++.
T Consensus 381 ~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~ 450 (569)
T PRK10600 381 KMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFP 450 (569)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCe
Confidence 777665543 2345677888999999999999999998876553 2346788889998888877543 344
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006701 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 441 ~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
+.++.+.........+...+.+++.|+++||+||++.+.+.+.+...++ .+.++|.|||+
T Consensus 451 i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~--------------------~~~l~V~D~G~ 510 (569)
T PRK10600 451 VKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQN--------------------QVKLSVQDNGC 510 (569)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC--------------------EEEEEEEECCC
Confidence 5554432222222224556999999999999999988877777654432 38999999999
Q ss_pred CCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006701 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
||+++. ..+.|+||++|+++++.|||+++++|. +|+||+|+++||..
T Consensus 511 Gi~~~~-----------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 511 GVPENA-----------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPE 557 (569)
T ss_pred CCCccc-----------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecC
Confidence 999863 125699999999999999999999999 89999999999974
No 37
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=1.4e-24 Score=243.81 Aligned_cols=214 Identities=27% Similarity=0.451 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
...++++.++||++|||+.|.++++.+.....+++..+.++.+.+.++++..++++++.+++.... ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 366899999999999999999999998876667778899999999999999999999999876532 3468999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~~~ 501 (634)
++++...+......+++.+.+..+++.+. +..|+..+.+++.|++.||++|+.. |.+.+.+...++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 99999999887677888888887766654 5679999999999999999999765 4555655443332
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006701 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
.+.|+|+|||+||+++..+++|+||++++. .|+|+||++||++++.|||+++++|. +|+||+|+++
T Consensus 533 --------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-----~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i~ 598 (607)
T PRK11360 533 --------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA-----KGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTLY 598 (607)
T ss_pred --------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC-----CCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEEE
Confidence 289999999999999999999999997653 47899999999999999999999999 8999999999
Q ss_pred EEecC
Q 006701 582 VKLGI 586 (634)
Q Consensus 582 lp~~~ 586 (634)
+|+..
T Consensus 599 lp~~~ 603 (607)
T PRK11360 599 LPINP 603 (607)
T ss_pred ecCCC
Confidence 99743
No 38
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.93 E-value=1.8e-23 Score=225.93 Aligned_cols=248 Identities=16% Similarity=0.216 Sum_probs=178.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006701 288 WRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREA-EKAIHARNDFRAVMNHEMRTLMHAIIALS 366 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~l~~~isHelr~pL~~I~~~~ 366 (634)
|.....+++..++.++...+.......+.++.+++++++..+.++..+++ +...+.++++++.++||++|||++|.+..
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44444566666667666555444444444444444444333332222222 22234577899999999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEe
Q 006701 367 SLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIM 445 (634)
Q Consensus 367 ~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~ 445 (634)
+.+++.. .+++.++..+.+.+.+.++.+.++++++..+ +...+.+++.+.++++.+.+.... +++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELED--RGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHhh--cCceEEEEe
Confidence 8887643 3444567788889899999999998876544 223457899999999998876543 455555554
Q ss_pred CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCC
Q 006701 446 APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (634)
Q Consensus 446 ~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~ 525 (634)
+.+.......++..+.++++|+++||+||++++.+.+.....++ .+.++|+|||+||+++
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------------------~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------------------RLMLVIEDDGSGLPPG 456 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--------------------EEEEEEEECCCCCCcC
Confidence 43333345567888999999999999999998877777655433 3899999999999876
Q ss_pred ChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 526 DIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 526 ~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
+ .|.|+||++||++++.|||+++++| ++||+|++++|.
T Consensus 457 ~------------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 457 S------------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred C------------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 3 2569999999999999999999998 479999999995
No 39
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=3.6e-27 Score=264.53 Aligned_cols=628 Identities=36% Similarity=0.431 Sum_probs=465.3
Q ss_pred CCcccCCC--CCCchhhHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHhhHHHHhHHhhh-c
Q 006701 2 ESCDCIDT--QWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP-YRWVLMQFGSFIILCGLTHFISLWTF-T 77 (634)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~s~~~i~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~cg~~~~~~~~~~-~ 77 (634)
.+|+|.+. .|+.......-.+.+|.+++.|||++|..++||..+...++ +.|....|..|+..|+.+|....|+. -
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 57999975 77777666677899999999999999999999999999885 99999999999999999999999994 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH---HHHHHHHHhhhhchHHHhHHHHHHHHHHh
Q 006701 78 VHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNR---ADELDREMGLILTQEETGRHVRMLTHEIR 154 (634)
Q Consensus 78 ~~~~~~~~~~~~~~~~~a~vs~~~a~~l~~~~p~~l~~~s~~~~~~~~---~~~l~~~~~~~~~~~~~~~~l~~l~~~i~ 154 (634)
...-.++......+..++.+++.++...+..+|..+..+.++.....+ +.++.++......+.+.....+..+..+.
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 333344444566788899999999999999999999999999999988 89999999999999999888999999999
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc----cccccccccCChhhHHHhccCCeEEcCCCC
Q 006701 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ----IQIGSSVPINLPIVTDVFNSAQAMRLPYNC 230 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (634)
...+.+.+++.+..+..+.+..+.+..|.+.+.+......|.+..+ .......+..++....++++.........+
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999999999887666666666654 222333344555555555555444333333
Q ss_pred chhhh-hhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHH-
Q 006701 231 PLARI-RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS- 308 (634)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~- 308 (634)
....+ +..............++++.+........+++.....++..+...+.+.++.|..++..+...+++++..++.
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 22221 1122335566677778888887777667788888999999999999888999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 006701 309 -HAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQRVMIETVL 386 (634)
Q Consensus 309 -~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~-~~~~~~~~~~l~~i~ 386 (634)
++.-.+.....++++...+..+..++++..........+...+.|..++|.+.+.+....+.. ....++..-.++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 666666666777777777777777777777777777888888889999999999988885443 344445555566677
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHH
Q 006701 387 KSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILN 466 (634)
Q Consensus 387 ~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~n 466 (634)
+....+..+++.-.+.++...+........+.+..++...+....+....+...+.+.+..+.+..+.+|..+..|++.+
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILD 509 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhh
Confidence 77778888888888888766666566667889999999999999988878888888888888888888888889999999
Q ss_pred HHHHHhh--cCCCCcE-EEEEEeecCCCCC----CCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCC
Q 006701 467 IVGNAVK--FTKEGYV-SIIASVAKPESLS----DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 467 Ll~NAik--~~~~g~i-~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
...++.. ++..++- ...+.....+... +...+.+.........++.+.+.++..+....+....+..+.+...
T Consensus 510 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 589 (786)
T KOG0519|consen 510 FNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD 589 (786)
T ss_pred hcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhcccc
Confidence 9999988 6666542 3333333211110 1112222222233334688899999999998888888777766554
Q ss_pred CCCC-CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCC---CCCCCcCCccCCCCCCCCCCCCCce
Q 006701 540 SSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNP---GSPIHPVALKGRASHGSADLTGPKP 615 (634)
Q Consensus 540 ~~~~-~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v 615 (634)
...+ ..+.++++..|.+..+.++|.+++.....+..-.....+-....... .......+.....+.....++|++|
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~i 669 (786)
T KOG0519|consen 590 LTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKI 669 (786)
T ss_pred chhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCce
Confidence 4433 24678999999999999999998874311110000000000000000 0000000111111124555799999
Q ss_pred EEecCchhhhhhhh
Q 006701 616 LFRDNDQIASTKSR 629 (634)
Q Consensus 616 LvvDD~~~~r~v~~ 629 (634)
||||||++||+|++
T Consensus 670 Llvddn~vn~~Va~ 683 (786)
T KOG0519|consen 670 LLVDDNPVNRKVAT 683 (786)
T ss_pred EEEecccchHHHHH
Confidence 99999999999943
No 40
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=2.6e-23 Score=214.47 Aligned_cols=218 Identities=37% Similarity=0.583 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccccceeeeHHH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS-LELDNGPFNLQI 421 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~-~~l~~~~~~l~~ 421 (634)
....++..++||++||++.+.+..+.+... ........+..+....+++..++++++.+++.+... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855544 222266788888899999999999999999987652 233456778999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCC
Q 006701 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (634)
+++++...+......+++.+....+ .+..+.+|+.++.+++.||+.||++|++.+.+.+.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999887777777775543 23447779999999999999999999985556666555433
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006701 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
++.++|.|+|+||+++..+++|+||++++..+. |+|+||++||++++.|||++.++|. ++.||+|+++
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i~ 326 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTIR 326 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEEE
Confidence 399999999999999999999999999987653 8999999999999999999999998 8899999999
Q ss_pred EEecCC
Q 006701 582 VKLGIC 587 (634)
Q Consensus 582 lp~~~~ 587 (634)
+|....
T Consensus 327 lP~~~~ 332 (336)
T COG0642 327 LPLAPA 332 (336)
T ss_pred Eecccc
Confidence 997654
No 41
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.93 E-value=3e-21 Score=195.59 Aligned_cols=342 Identities=14% Similarity=0.179 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc
Q 006701 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ 200 (634)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~ 200 (634)
+.+.++++.+++.+.++++++.+..+++.++.+.++...++.++.+++.+....++..+.+.+.++++......++-...
T Consensus 223 lY~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~d 302 (574)
T COG3850 223 LYADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQWD 302 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCcc
Confidence 34678888888999999999999999999999999999999999999999999999999999887655543333221111
Q ss_pred cccccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEe
Q 006701 201 IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 280 (634)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~ 280 (634)
.. .++ + ...+..|. .+| +...+..++.+..
T Consensus 303 i~-----------------------~~d-~----------------~~~~~~~~---------~~~-l~~~g~~Lg~l~~ 332 (574)
T COG3850 303 IS-----------------------EGD-Q----------------PSGLKWPQ---------EDP-LTQQGHLLGTLPW 332 (574)
T ss_pred ee-----------------------cCC-C----------------Ccccchhh---------hcc-hhhhhhhheeeec
Confidence 00 000 0 00000000 111 1111222333322
Q ss_pred cCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006701 281 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360 (634)
Q Consensus 281 ~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~ 360 (634)
.+...+++..++..++.+++.++...+..++ ++.-..+++++..++.+++.+-+.|+
T Consensus 333 ----~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~-------------------~qQLllmEERatIAReLHDSiAQsLS 389 (574)
T COG3850 333 ----QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQ-------------------QQQLLLMEERATIARELHDSIAQSLS 389 (574)
T ss_pred ----cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999854432211 11122344577788888888888888
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcC
Q 006701 361 AIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 437 (634)
Q Consensus 361 ~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 437 (634)
.+.-.+++|+.. ...++.++.+..+++..+....-+.+++.--| +..+.-++...++++++.+.. ..
T Consensus 390 ~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~~---qt 459 (574)
T COG3850 390 FLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFSN---QT 459 (574)
T ss_pred HHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCchHHHHHHHHHHHHh---cc
Confidence 888888888753 45666778888888888888888888776444 344466778888888888875 35
Q ss_pred CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEE
Q 006701 438 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVND 517 (634)
Q Consensus 438 ~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 517 (634)
++.++++..-.......--..++-||+++.++||+||+.+.++.+.+....++ +++.|+|
T Consensus 460 g~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~VeD 519 (574)
T COG3850 460 GITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTVED 519 (574)
T ss_pred CCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEEee
Confidence 66666654322111111234678999999999999999999999998877632 9999999
Q ss_pred cCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 518 SGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 518 ~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
||+|||+... ..| ..||.||+++++.+||.+.+++. +|+||.+.++||
T Consensus 520 nG~Gi~~~~e----------------~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~ 567 (574)
T COG3850 520 NGVGIDEAAE----------------PSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFP 567 (574)
T ss_pred CCcCCCCccC----------------CCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEec
Confidence 9999998631 124 89999999999999999999999 999999999998
No 42
>PRK13560 hypothetical protein; Provisional
Probab=99.92 E-value=1.6e-23 Score=243.60 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 006701 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
++++++++++++.++.|++.|+||+||||+.|.++++++.+...+++...++.........+....+.+..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 662 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQ--------- 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 44555666677788999999999999999999999999887766777766666666665555555554432
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEe
Q 006701 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASV 486 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~ 486 (634)
......+++.++++++...+......+...+.+.++.+.......+...+.+|+.||++||+||+.+ |.+.+.+..
T Consensus 663 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 663 SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2234578999999999999888776666666666665544444446677889999999999999743 445555543
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEE
Q 006701 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 566 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 566 (634)
..++ ++.|+|+|||+|||++... ..|+||||+|||++|+.|||+|+
T Consensus 743 ~~~~-------------------~v~i~V~D~G~GI~~~~~~---------------~~~~gLGLai~~~iv~~~gG~I~ 788 (807)
T PRK13560 743 QGDG-------------------MVNLCVADDGIGLPAGFDF---------------RAAETLGLQLVCALVKQLDGEIA 788 (807)
T ss_pred cCCC-------------------EEEEEEEeCCCcCCccccc---------------cccCCccHHHHHHHHHHcCCEEE
Confidence 3222 5999999999999987421 13668999999999999999999
Q ss_pred EEecCCCCceEEEEEEEec
Q 006701 567 LDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 567 v~s~~~g~Gt~f~i~lp~~ 585 (634)
++|. +||+|+|+||+.
T Consensus 789 v~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 789 LDSR---GGARFNIRFPMS 804 (807)
T ss_pred EEcC---CceEEEEEecCC
Confidence 9985 699999999974
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-22 Score=199.34 Aligned_cols=213 Identities=20% Similarity=0.304 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLL---ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
..++-+..++||+++||++++.|+-... ++..++....+++.|..-++|+..+++.+..|+|..+++.+ ..++++
T Consensus 450 vVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L 527 (673)
T COG4192 450 VVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRL 527 (673)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccH
Confidence 4567778899999999999998865433 44556677899999999999999999999999998766544 458999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc--EEEEEEeecCCCCCCCCC
Q 006701 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--VSIIASVAKPESLSDWRP 497 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~--i~i~~~~~~~~~~~~~~~ 497 (634)
++.++.+.+.+....+.+.+.+.. +. ...+|.||...++||+.|++-||++++.... +.+.....+.+
T Consensus 528 ~~~v~~AweLl~~khk~rQ~~Li~--pt-D~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e------- 597 (673)
T COG4192 528 NSVVEQAWELLQTKHKRRQIKLIN--PT-DDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQE------- 597 (673)
T ss_pred HHHHHHHHHHHHhhhhhccccccC--Cc-ccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCccc-------
Confidence 999999999999888777766554 33 3446999999999999999999999876433 33333333333
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceE
Q 006701 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~ 577 (634)
.+++.|.|||+|.|-+..+++|.||.++|.. |.|+||+||..++++|.|++.+.|. ..+|..
T Consensus 598 ------------~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v-----gLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~ 659 (673)
T COG4192 598 ------------MLRIAIIDNGQGWPHELVDKLLTPFTTSKEV-----GLGLGLSISQSLMEQMQGRLALAST-LTKNAM 659 (673)
T ss_pred ------------ceEEEEecCCCCCchhHHHHhcCCccccccc-----ccccchhHHHHHHHHhcCcchHhhh-cccCcE
Confidence 3899999999999999999999999987754 8899999999999999999999999 999999
Q ss_pred EEEEEEec
Q 006701 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lp~~ 585 (634)
+.+.|...
T Consensus 660 ViL~f~v~ 667 (673)
T COG4192 660 VILEFQVD 667 (673)
T ss_pred EEEEEeec
Confidence 98888754
No 44
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.88 E-value=2.8e-21 Score=214.28 Aligned_cols=195 Identities=21% Similarity=0.293 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETV-LKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i-~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
..++++.++||++|||+.|.+++++... ++..+++..+ .+...++..+++++.+ + +
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-----~ 395 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS--------------P-----V 395 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC--------------H-----H
Confidence 3456677899999999999998876432 2223333222 2222233333322210 0 1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceE-EccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~d~~~l~qvl~nLl~NAik~~~---~g~i~i~~~~~~~~~~~~~~~~ 498 (634)
+...+......+..+++.+.+..++..+... ..+...+.+++.||++||++|+. .+.+.+.+...++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~--------- 466 (542)
T PRK11086 396 IAGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG--------- 466 (542)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC---------
Confidence 1111112223345678888877665554322 12345799999999999999964 3455555544322
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006701 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|.|+|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +|+||+|
T Consensus 467 -----------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-----~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f 529 (542)
T PRK11086 467 -----------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-----SNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQF 529 (542)
T ss_pred -----------EEEEEEEECCCCCCHHHHHHHHhCCCccCC-----CCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEE
Confidence 389999999999999999999999998663 48899999999999999999999999 8999999
Q ss_pred EEEEEecCC
Q 006701 579 TFLVKLGIC 587 (634)
Q Consensus 579 ~i~lp~~~~ 587 (634)
+++||+...
T Consensus 530 ~i~lP~~~~ 538 (542)
T PRK11086 530 FVQIPWDGE 538 (542)
T ss_pred EEEEeCCCC
Confidence 999998543
No 45
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=1.4e-20 Score=208.63 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=140.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHH
Q 006701 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
.+..++||++|||++|.+++++- +.++.++.+...++++..+++.+...... ..+...+
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLL 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHH
Confidence 34568999999999999987652 22345677777788888887777653220 1111111
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCC-ceEEccHHHHHHHHHHHHHHHhhcC---CCC--cEEEEEEeecCCCCCCCCCCCC
Q 006701 427 IKLIKPVASCKKLSMTLIMAPELP-TYAVGDEKRLMQTILNIVGNAVKFT---KEG--YVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~d~~~l~qvl~nLl~NAik~~---~~g--~i~i~~~~~~~~~~~~~~~~~~ 500 (634)
... ...+.++++.+.+..+.... .....|+..+.+++.||++||++|+ +.+ .+.+.....++
T Consensus 400 ~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~----------- 467 (545)
T PRK15053 400 FGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD----------- 467 (545)
T ss_pred HHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC-----------
Confidence 111 22344567777765443321 1134599999999999999999995 333 34444333221
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006701 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.+.|+|||+||+++..+++|++||+++... ..|+|+||++||++++.|||+|+++|. +|.||+|++
T Consensus 468 ---------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~i 535 (545)
T PRK15053 468 ---------DVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFSI 535 (545)
T ss_pred ---------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEEE
Confidence 48999999999999999999999999976542 247899999999999999999999999 899999999
Q ss_pred EEEec
Q 006701 581 LVKLG 585 (634)
Q Consensus 581 ~lp~~ 585 (634)
.||..
T Consensus 536 ~lP~~ 540 (545)
T PRK15053 536 FIPKV 540 (545)
T ss_pred EECCC
Confidence 99974
No 46
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-17 Score=171.56 Aligned_cols=195 Identities=21% Similarity=0.257 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHH
Q 006701 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (634)
Q Consensus 346 ~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (634)
.-++..+||..|-|++|.|++++=. .++..+.|.+.++.-...++.+..--+ .--+..++-.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-------yd~a~~~I~~~~~~qq~~~~~l~~~i~-----------~~~lAg~Llg 396 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-------YDDALDYIQQESEEQQELIDSLSEKIK-----------DPVLAGFLLG 396 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHhhhhhhHHHHHHhcc-----------cHHHHHHHHh
Confidence 4556789999999999999998732 223334444444444444444322111 1123333322
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCCce-EEccHHHHHHHHHHHHHHHhhcCC--C--CcEEEEEEeecCCCCCCCCCCCC
Q 006701 426 VIKLIKPVASCKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTK--E--GYVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~d~~~l~qvl~nLl~NAik~~~--~--g~i~i~~~~~~~~~~~~~~~~~~ 500 (634)
-...+++.|+.+.++....++.. -.-+...+-.++-||++||+++.. . +.+.+.+....+
T Consensus 397 ----K~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~----------- 461 (537)
T COG3290 397 ----KISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD----------- 461 (537)
T ss_pred ----HHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC-----------
Confidence 22345578888888776655532 223788899999999999999875 2 334444433333
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006701 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.++|+|||||||++..+++|+..++++.. .+.|.||++||+.|+.+||.|+++|+ .+.||+|++
T Consensus 462 ---------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~i 527 (537)
T COG3290 462 ---------ELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFSI 527 (537)
T ss_pred ---------EEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEEE
Confidence 4999999999999999999999999998873 47799999999999999999999998 899999999
Q ss_pred EEEecCC
Q 006701 581 LVKLGIC 587 (634)
Q Consensus 581 ~lp~~~~ 587 (634)
.+|....
T Consensus 528 ~iP~~~~ 534 (537)
T COG3290 528 YIPKVKE 534 (537)
T ss_pred ECCCCcc
Confidence 9997644
No 47
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.85 E-value=1.2e-17 Score=186.12 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=135.1
Q ss_pred HHHHhhhHHHHHHHHH----HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHH
Q 006701 351 MNHEMRTLMHAIIALS----SLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (634)
Q Consensus 351 isHelr~pL~~I~~~~----~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~ 424 (634)
++||+++|+..+..++ +++... ...++..+.+..+.+...++...+.+++...+ ....+.++.+.++
T Consensus 367 la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~ 439 (565)
T PRK10935 367 IARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSALE 439 (565)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHH
Confidence 5666666666555443 334332 22345556677777777777777777765333 3445789999999
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccC
Q 006701 425 EVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVS 504 (634)
Q Consensus 425 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 504 (634)
+++..++.. .++.+.+..+.+.......+..++.|++.|++.||+||++.+.+.+......++
T Consensus 440 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~-------------- 502 (565)
T PRK10935 440 EMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG-------------- 502 (565)
T ss_pred HHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--------------
Confidence 999988754 333444443322222233345679999999999999999888877776654332
Q ss_pred CCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 505 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 505 ~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
.+.+.|.|||+||+++. ..|+|+||++|+++++.|||+|+++|. +|+||+|++.+|.
T Consensus 503 -----~~~i~V~D~G~Gi~~~~-----------------~~~~glGL~i~~~iv~~~~G~i~v~s~-~~~Gt~~~i~lP~ 559 (565)
T PRK10935 503 -----EHTVSIRDDGIGIGELK-----------------EPEGHYGLNIMQERAERLGGTLTISQP-PGGGTTVSLTFPS 559 (565)
T ss_pred -----EEEEEEEECCcCcCCCC-----------------CCCCCcCHHHHHHHHHHcCCEEEEEEC-CCCcEEEEEEECC
Confidence 38999999999999752 236799999999999999999999999 8999999999997
Q ss_pred c
Q 006701 585 G 585 (634)
Q Consensus 585 ~ 585 (634)
.
T Consensus 560 ~ 560 (565)
T PRK10935 560 Q 560 (565)
T ss_pred C
Confidence 5
No 48
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-17 Score=160.51 Aligned_cols=245 Identities=16% Similarity=0.202 Sum_probs=185.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006701 290 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALD-SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 368 (634)
Q Consensus 290 ~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~ 368 (634)
.+..+++.-++.|....+.......+.++.++.+.++..+-+ -+++-....+..+++.++.+++|+.+.+++|...+..
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 567788888888855544444444444444444433222111 1233333445568899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCC
Q 006701 369 LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPE 448 (634)
Q Consensus 369 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 448 (634)
.++...++..++....|++-+.++.+.+++++.--| +...+...+.+.++++++.++ ..+++|.+.++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEeccccC
Confidence 998777888888888888888888888888875333 334457788899999998887 457899888877654
Q ss_pred CCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006701 449 LPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 449 ~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
.......-+.-++++.+++++|.+||+++..+++.....++ .+.++|+|||.|+|+..
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------------------~l~Lei~DdG~Gl~~~~-- 457 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------------------RLMLEIEDDGSGLPPGS-- 457 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc--------------------EEEEEEecCCcCCCCCC--
Confidence 43322233456999999999999999999999998876554 38999999999999863
Q ss_pred hhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 529 LLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 529 ~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
+-.|+||..++++|..+||++.++|. .||++.+.+|
T Consensus 458 ----------------~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 458 ----------------GVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred ----------------CccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 23599999999999999999999997 7999999999
No 49
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=7.3e-19 Score=184.37 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll 423 (634)
+.+|++.++|+++|||+.|.++.+++... .+..++++.+.+.+.++..+++++++.. ..+++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~---------~~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDER---------GWETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccC---------CcCcccHHHHH
Confidence 34688889999999999999999987632 2345577888888999999888886543 24578999999
Q ss_pred HHHHHHHHHhhhcCCceEEEEeCCCCCceEEc-cHHHHHHHHHHHHHHHhhcC---C-CCcEEEEEEeecCCCCCCCCCC
Q 006701 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVG-DEKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-d~~~l~qvl~nLl~NAik~~---~-~g~i~i~~~~~~~~~~~~~~~~ 498 (634)
+++...+... +..+.+.. +..+ +.. +...|.+|+.||+.||+||+ . .|.+.+.+.....+
T Consensus 238 ~~~~~~~~~~----~~~i~~~~-~~~~--~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~-------- 302 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEG-PGIR--LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEG-------- 302 (361)
T ss_pred HHHHHhhcCC----CceEEEEC-CCee--eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCC--------
Confidence 9998876532 44555542 2221 221 23569999999999999993 2 36666665222221
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHH-hCCEEEEEecCCCCceE
Q 006701 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL-MGGHIWLDSEGLDKGST 577 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~-~gG~i~v~s~~~g~Gt~ 577 (634)
..+.+.|.|||.|++++. .|+|+||.+|+++++. |||++++++. +.||+
T Consensus 303 ----------~~~~i~v~d~G~~~~~~~------------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~ 352 (361)
T PRK13559 303 ----------AGFRIDWQEQGGPTPPKL------------------AKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLL 352 (361)
T ss_pred ----------CeEEEEEECCCCCCCCCC------------------CCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEE
Confidence 148999999999987652 3679999999999987 9999999997 47999
Q ss_pred EEEEEEec
Q 006701 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lp~~ 585 (634)
|+++||+.
T Consensus 353 ~~l~~P~~ 360 (361)
T PRK13559 353 ARIEIPSR 360 (361)
T ss_pred EEEEEeCC
Confidence 99999964
No 50
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=1.6e-19 Score=154.98 Aligned_cols=109 Identities=33% Similarity=0.582 Sum_probs=98.4
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhc
Q 006701 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (634)
Q Consensus 455 ~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 533 (634)
||+..+.+++.||+.||++|+++ +.+.+.+...++ ++.|+|.|+|+||+++.++++|++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 68999999999999999999987 777777766654 399999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 534 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 534 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
|++.+.......|.|+||++|+.++++|+|++++++. +++||+|+|++|+
T Consensus 61 ~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 61 FFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred cccccccccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 9998875444568999999999999999999999999 8999999999996
No 51
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-16 Score=166.90 Aligned_cols=195 Identities=22% Similarity=0.299 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006701 342 HARNDFRAVMNHEMRTLMHAIIALSSLLL--ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
+++.++++.+|+.+.+-|+++....+... .+...++.++.++.+.+.++...+-++.+.. .+++...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~~~e~l~evR~~v~---------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKLLREALQEVRALVR---------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCchhhc
Confidence 67889999999999999999987222222 2233444555555555544444333333322 233333333
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006701 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (634)
..+...+....+......++.+........+.+....+..+++++++.++|++||+++.++.+.+...++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33444444444444445566666655433223334467889999999999999999999999998887664
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006701 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
+.++|.|||+|++++.. +.|+||..+|++++.+||++.++|. +|+||+++
T Consensus 311 -----------l~l~V~DnG~Gf~~~~~------------------~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~ 360 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDKE------------------GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVT 360 (365)
T ss_pred -----------EEEEEEECCcCCCcccc------------------CCCcchhhHHHHHHHcCCEEEEEec-CCCceEEE
Confidence 99999999999998732 2489999999999999999999999 89999999
Q ss_pred EEEEe
Q 006701 580 FLVKL 584 (634)
Q Consensus 580 i~lp~ 584 (634)
+++|+
T Consensus 361 i~lPl 365 (365)
T COG4585 361 ITLPL 365 (365)
T ss_pred EecCC
Confidence 99995
No 52
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.71 E-value=3.2e-16 Score=171.27 Aligned_cols=147 Identities=20% Similarity=0.346 Sum_probs=115.4
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcCC-------------CCcE
Q 006701 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFTK-------------EGYV 480 (634)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qv---l~nLl~NAik~~~-------------~g~i 480 (634)
+.+..++...-..++..+...+..+++.+.... ...|+..+.++ +.||+.||++|+- .|.+
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 446677777777777776666667777665543 45599999988 5799999999961 2455
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh---------------------hhhhcccccCC
Q 006701 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---------------------LLFTKFAQSRG 539 (634)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---------------------~if~~f~~~~~ 539 (634)
.+......+ .+.|+|+|+|.||+++.+. .||+|+|+++.
T Consensus 420 ~l~a~~~~~--------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQGG--------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 555544332 3899999999999986543 59999998876
Q ss_pred CCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006701 540 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 540 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
..+..+|.|+||.+||++++.|||+|+++|. +|+||+|++.||+...
T Consensus 480 ~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 480 QVTDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred ccccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 5555579999999999999999999999999 9999999999998753
No 53
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-12 Score=124.52 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006701 340 AIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 340 ~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
...++.++++.+++.+.+-|-+..-.+++....-.++.. -....+.+.++++...|+++..+|. .-.+--.+...|
T Consensus 247 QedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL 322 (459)
T COG4564 247 QEDERARLARELHDGISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGL 322 (459)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhH
Confidence 345577899999999999999998888888765333221 1124566677888888888776665 111212234455
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006701 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (634)
...++.+++.++ ...++.++++.+.........-...+++|.++.++|.=+|+...++.+......+
T Consensus 323 ~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d---------- 389 (459)
T COG4564 323 TAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGD---------- 389 (459)
T ss_pred HHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCc----------
Confidence 666666666665 4678888887765544444446788999999999999999977777776655443
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006701 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+++.|+|||+|++.+... .+-.|+||..+++.+...||++.++|. + +||.++
T Consensus 390 ----------~vql~vrDnG~GF~~~~~~---------------~~~~GiGLRNMrERma~~GG~~~v~s~-p-~GTel~ 442 (459)
T COG4564 390 ----------MVQLMVRDNGVGFSVKEAL---------------QKRHGIGLRNMRERMAHFGGELEVESS-P-QGTELT 442 (459)
T ss_pred ----------ceEEEEecCCCCccchhhc---------------cCccccccccHHHHHHHhCceEEEEec-C-CCcEEE
Confidence 3999999999999876431 112499999999999999999999998 4 599999
Q ss_pred EEEEecC
Q 006701 580 FLVKLGI 586 (634)
Q Consensus 580 i~lp~~~ 586 (634)
+.+|...
T Consensus 443 v~Lp~~~ 449 (459)
T COG4564 443 VLLPLDA 449 (459)
T ss_pred EEecchh
Confidence 9999753
No 54
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-12 Score=125.32 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006701 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
.+..+...++|.+||-|+.|.+++.+-.+...++ ..+.+...+..+..|....+.|.. . ....++...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L~~---------s-~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYK---------S-GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHhc---------C-CcceEcHHHH
Confidence 3567888899999999999999998877765555 556666666666666555544421 1 2347889999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEeecCCCCCCCCCC
Q 006701 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~----~g~i~i~~~~~~~~~~~~~~~~ 498 (634)
++.+...+.+....+.+.+....+++.. +-.....-|.-|+.+|++||+||+- .|.+.|.....++++
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~-l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------- 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNVF-LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------- 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCceE-ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC-------
Confidence 9999998887654455666665544322 1222456699999999999999973 466777776665431
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHH-HHhCCEEEEEecCCCCceE
Q 006701 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFV-NLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv-~~~gG~i~v~s~~~g~Gt~ 577 (634)
...+.|.|||.|++.+.- + ...|+|+.+++.++ ++.||.+...+. .||+
T Consensus 159 -----------~~~l~v~deg~G~~~~~~------~----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~---~Gt~ 208 (221)
T COG3920 159 -----------RFLLTVWDEGGGPPVEAP------L----------SRGGFGLQLVERLVPEQLGGELEDERP---DGTE 208 (221)
T ss_pred -----------eEEEEEEECCCCCCCCCC------C----------CCCCcHHHHHHHHHHHHcCCeEEEEcC---CCEE
Confidence 278999999999987631 0 23499999999999 899999999886 3999
Q ss_pred EEEEEEecCC
Q 006701 578 VTFLVKLGIC 587 (634)
Q Consensus 578 f~i~lp~~~~ 587 (634)
|++++|....
T Consensus 209 ~~i~~~~~~~ 218 (221)
T COG3920 209 FRLRFPLSEA 218 (221)
T ss_pred EEEEEecccc
Confidence 9999997643
No 55
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.56 E-value=9.7e-11 Score=117.89 Aligned_cols=318 Identities=18% Similarity=0.181 Sum_probs=187.8
Q ss_pred HHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCC
Q 006701 163 LKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY 242 (634)
Q Consensus 163 l~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (634)
+..+.+-+.+.++++.+++ +|.+...-....+.+.. ....++..+....+++.++.+....... ...+ ..
T Consensus 227 ~~~va~Ii~~~~~~~AVai--Td~e~ilA~vg~g~dhh---i~g~~i~s~~t~~ai~~g~vv~~~~~e~---~~cs--h~ 296 (557)
T COG3275 227 LMKVAEIIYEELGAGAVAI--TDREKLLAFVGIGDDHH---IPGKPIISSLTRKAIKTGEVVYADGNEV---YECS--HP 296 (557)
T ss_pred HHHHHHHHHHHhCCCeEEe--cCHHHHHHhhccccccc---CCCCeeccHHHHHHHhhCCEEEEccchh---hccC--CC
Confidence 3456667777788866665 33222211111111111 1122344556678888888776654444 2211 44
Q ss_pred CCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 243 VPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (634)
Q Consensus 243 ~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~ 322 (634)
..+-.+.+..|+.+. +.++|.+-.....++.++.-+.++.+-++.-+..-++.. +.+++++
T Consensus 297 ~c~l~s~lViPL~~~--------------g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~g----e~e~q~~- 357 (557)
T COG3275 297 TCKLGSALVIPLRGK--------------GRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEAG----EAERQRE- 357 (557)
T ss_pred CCCcCCceEeecccC--------------CceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHHh----HHHHHHH-
Confidence 555666777776543 345777777766666777666665555444333222111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAV-MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~-isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
.+.+++ .+.+-+. =.|=+=|-|++|+.... ++.+...+++-++..
T Consensus 358 ------ll~~AE---------ik~LqaQvnPHFLFNaLNTIsa~IR-------------------~npdkAreLil~LS~ 403 (557)
T COG3275 358 ------LLKQAE---------IKALQAQVNPHFLFNALNTISAVIR-------------------RNPDKARELILYLST 403 (557)
T ss_pred ------HHHHHH---------HHHHHhccChHHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHH
Confidence 111111 1122222 26888888888865432 223344455666666
Q ss_pred HHHhhCCCccccceeeeHHHHHHHHHHHHHHhhh--cCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC----
Q 006701 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVAS--CKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT---- 475 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~---- 475 (634)
|-|..-... ..+.++|.+-++++-..++-.-. ...+++.+++++.+...- -| .-+++-|+.||+||.
T Consensus 404 yfR~NL~~~--~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~--iP---~filQPLVENAIKHG~~~~ 476 (557)
T COG3275 404 YFRYNLENN--TQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQ--IP---SFILQPLVENAIKHGISQL 476 (557)
T ss_pred HHHHHhcCC--cceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhcc--Cc---hhhhhHHHHHHHHhcccch
Confidence 655432211 13468888888877776653321 234556665555443211 12 246778999999996
Q ss_pred -CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHH
Q 006701 476 -KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAIC 554 (634)
Q Consensus 476 -~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~ 554 (634)
..|.+.+++...+.+ +.+.|+|||.|++++. ..|+|+||+.+
T Consensus 477 ~~~g~V~I~V~~~d~~--------------------l~i~VeDng~li~p~~-----------------~~g~giGL~nv 519 (557)
T COG3275 477 KDTGRVTISVEKEDAD--------------------LRIEVEDNGGLIQPDE-----------------EDGTGIGLANV 519 (557)
T ss_pred hcCCceEEEEEEeCCe--------------------EEEEEecCCCCcCCCC-----------------CCCCChHHHHH
Confidence 347788887776654 9999999999999851 24889999999
Q ss_pred HHHHHHhCC---EEEEEecCCCCceEEEEEEEecCCC
Q 006701 555 RRFVNLMGG---HIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 555 k~iv~~~gG---~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
+++++.+=| -+.+++. +..||++.+++|.....
T Consensus 520 ~~RLk~lyG~~~gl~i~~~-~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 520 HKRLKLLYGDDEGLHIESL-EQAGTRIIFRLPLQRTA 555 (557)
T ss_pred HHHHHHhcCccccceEEec-cCCCcEEEEEecCcccc
Confidence 999998877 6888888 77899999999986543
No 56
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.55 E-value=2e-13 Score=150.01 Aligned_cols=147 Identities=21% Similarity=0.346 Sum_probs=115.1
Q ss_pred eeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcC-------------CCCc
Q 006701 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFT-------------KEGY 479 (634)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qv---l~nLl~NAik~~-------------~~g~ 479 (634)
.+.+..++...-...+..+..-|-++++.+.+.... -|+.-+.++ +.+|+.||+.|. +.|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~te---lDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDTE---LDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCee---ehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 345566666666666666665566666666555432 288777776 679999999994 2366
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC------------------------hhhhhhccc
Q 006701 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD------------------------IPLLFTKFA 535 (634)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~------------------------~~~if~~f~ 535 (634)
++++.....+ .+.|+|+|+|.||+.+. ..-||.|.|
T Consensus 466 I~L~A~~~gn--------------------~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 466 ITLSAYHEGN--------------------NIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEEcCCC--------------------eEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 6666555433 49999999999998753 234899999
Q ss_pred ccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006701 536 QSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 536 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
+|+..-+.-+|.|.||-++|+-++++||+|.++|. +|+||+|++.||+..
T Consensus 526 STa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTL 575 (716)
T COG0643 526 STAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTL 575 (716)
T ss_pred CcchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHH
Confidence 99988888889999999999999999999999999 999999999999973
No 57
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.49 E-value=2.9e-13 Score=142.94 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=102.6
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh
Q 006701 454 VGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 454 ~~d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~ 529 (634)
.++...|.+++.||++||++|+..+ .+.+.+...+.+ ...+.|.|+|||+||+++++++
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~ 93 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPK 93 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHH
Confidence 3466789999999999999999764 345544432111 1148899999999999999999
Q ss_pred hhhcccccCCCC---CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCCCCCCCCCCcCCccCCCC
Q 006701 530 LFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGICNNPGSPIHPVALKGRAS 604 (634)
Q Consensus 530 if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lp~~~~~~~~~~~~~~~~~~~~~ 604 (634)
+|++|+.+.... ...++.|+||++|+.+++.|+|. +++.|. +++|+ .|++.+++......+..... ..
T Consensus 94 iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~~kn~g~i~~~----~~-- 166 (535)
T PRK04184 94 VFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDTKKNEPIILER----EE-- 166 (535)
T ss_pred HhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecccccCCeeccc----cc--
Confidence 999986543321 12246899999999999999987 999998 78888 89999998754422211000 00
Q ss_pred CCCCCCCCCceEEecCchh
Q 006701 605 HGSADLTGPKPLFRDNDQI 623 (634)
Q Consensus 605 ~~~~~~~~~~vLvvDD~~~ 623 (634)
......+|.+|.|..|...
T Consensus 167 ~~~~~~~GT~V~V~l~~~~ 185 (535)
T PRK04184 167 VDWDRWHGTRVELEIEGDW 185 (535)
T ss_pred cCCCCCCCEEEEEEECCcC
Confidence 0112247888888665554
No 58
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.46 E-value=9e-13 Score=112.15 Aligned_cols=110 Identities=36% Similarity=0.641 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhc
Q 006701 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (634)
Q Consensus 455 ~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 533 (634)
+|...|.+++.|++.|+++|+.. +.+.+.+...+. .+.+.|.|+|.|++++...++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~--------------------~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD--------------------HLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHhcC
Confidence 47788999999999999999987 556665554432 389999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006701 534 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 534 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
++..+.......+.|+||++|+.+++.|+|++++.+. ++.|++|++.+|+.
T Consensus 61 ~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 61 FFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred eEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 8876532222347899999999999999999999987 78999999999963
No 59
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.27 E-value=4.4e-11 Score=128.91 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=88.2
Q ss_pred cCCceEEEEeCCCCCce-EEccHHHHHHHHHHHHHHHhhcCCCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceE
Q 006701 436 CKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFY 510 (634)
Q Consensus 436 ~~~i~~~~~~~~~~~~~-v~~d~~~l~qvl~nLl~NAik~~~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (634)
.+.+.+...+..+.+.. ...|...|.+++.|||.||++|+..++ +.+.+.. .+. +
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~------------------~ 81 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGD------------------Y 81 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCC------------------E
Confidence 45666666555554432 223577899999999999999997653 4444432 221 4
Q ss_pred EEEEEEEcCCCCCCCChhhhhhcccccCC-----CCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCC-ceEEEEEEEe
Q 006701 511 LRVQVNDSGCGVPPQDIPLLFTKFAQSRG-----SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK-GSTVTFLVKL 584 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~-Gt~f~i~lp~ 584 (634)
+.|.|.|||+||++++++++|++|+.+.. ......|.|||++++...+. +||.+++.|. .++ +..+.+.+++
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~GgpI~I~S~-~~~~~~g~~~~L~I 159 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKPAKITSR-TQGSEEAQYFELII 159 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCcEEEEeC-CCCCCceeEEEEEE
Confidence 89999999999999999999999975421 11123366666666666663 6899999998 543 4445556665
Q ss_pred cCC
Q 006701 585 GIC 587 (634)
Q Consensus 585 ~~~ 587 (634)
...
T Consensus 160 d~g 162 (795)
T PRK14868 160 DTD 162 (795)
T ss_pred ecC
Confidence 444
No 60
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.25 E-value=6.8e-11 Score=123.82 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=84.2
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006701 453 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+.++...|.+++.||++||++|+..+ .+.+.+.....+ ++.|.|.|||+||++++++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~ 82 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIP 82 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHH
Confidence 44588899999999999999998653 344444332221 3789999999999999999
Q ss_pred hhhhcccccCCCC---CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCceEE--EEEEEe
Q 006701 529 LLFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTV--TFLVKL 584 (634)
Q Consensus 529 ~if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f--~i~lp~ 584 (634)
++|++|+.+.... ....+.|+||++++.+++.|+|+ +++.|. .+ |..| .+.+.+
T Consensus 83 ~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~-~~-g~~~~~~~~~~i 142 (488)
T TIGR01052 83 KVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISS-TG-GEIYVYKMKLKI 142 (488)
T ss_pred hhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEe-cC-CceEEEEEEEEe
Confidence 9999987654422 12247899999999999999998 999998 44 5555 444443
No 61
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.25 E-value=2.3e-12 Score=145.55 Aligned_cols=241 Identities=30% Similarity=0.342 Sum_probs=198.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHH
Q 006701 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
+...++||+++|++. +....+.....+.+++.+.......+.....+++++++.++.+.+...+...+|++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999987 555555666778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCC-----CCCCC----
Q 006701 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL-----SDWRP---- 497 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~-----~~~~~---- 497 (634)
.+.+...+..++..+....+.+.|..+.+|+..+.|++.|++.||+|++..|.+.......+.... ..|..
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~ 381 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHM 381 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhhhhhhh
Confidence 999999999999999998888888889999999999999999999999999988887776554321 00000
Q ss_pred -C-------------CCCccCC---C--CceEEEEEEEEcCCCCCCCChhh-hhhcccccCCCCCC-CCCccccHHHHHH
Q 006701 498 -P-------------EFYPVST---D--GHFYLRVQVNDSGCGVPPQDIPL-LFTKFAQSRGSSCQ-TPRAGLGLAICRR 556 (634)
Q Consensus 498 -~-------------~~~~~~~---~--~~~~l~i~V~D~G~Gi~~~~~~~-if~~f~~~~~~~~~-~~g~GlGL~i~k~ 556 (634)
. ...+... . .-..-.+.+.|+|.||+...... +|.+|-+......+ .+|+|+|+.+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~ 461 (786)
T KOG0519|consen 382 AGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFS 461 (786)
T ss_pred ccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhcc
Confidence 0 0000000 0 01123567899999999998887 99999887666554 4599999999999
Q ss_pred HHHHhCCEEEEEecCCCCceEEEEEEEecCCCCC
Q 006701 557 FVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNP 590 (634)
Q Consensus 557 iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~ 590 (634)
+++.++|.+.+.+. ...|++|++.+++....+.
T Consensus 462 l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~ 494 (786)
T KOG0519|consen 462 LVELMSGEISDISC-ISLGKTFSFTLDLLTNLPK 494 (786)
T ss_pred HHHHHHHHhhhhhh-hccCceeeEEEEeccCCCc
Confidence 99999999999998 8899999999998766543
No 62
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.24 E-value=6e-11 Score=99.20 Aligned_cols=101 Identities=36% Similarity=0.617 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcCCC--CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhccccc
Q 006701 460 LMQTILNIVGNAVKFTKE--GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (634)
Q Consensus 460 l~qvl~nLl~NAik~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (634)
+.+++.+++.||++|+.. +.+.+.+..... .+.+.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~--------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGD--------------------HLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 467899999999999984 555555544322 3899999999999999999998876211
Q ss_pred CCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006701 538 RGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 538 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
.......+.|+||.+|+++++.|||++++.+. .+.|++|++.+
T Consensus 61 -~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 61 -SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred -CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 11112347899999999999999999999998 67899988763
No 63
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.23 E-value=1.3e-09 Score=123.19 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=138.5
Q ss_pred HHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEE--Eeecccc--cccc
Q 006701 130 DREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS--YTLNNQI--QIGS 205 (634)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~--~~~~~~~--~~~~ 205 (634)
++..+.++++....+.+.++++.+.+..++++++..+++.+.+.++++.|+|+++|+++..+.+. ++.+... ..+.
T Consensus 171 ~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~ 250 (686)
T PRK15429 171 NVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 250 (686)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccc
Confidence 33334455555668899999999999999999999999999999999999999999887766653 3332221 1233
Q ss_pred ccccCChhhHHHhccCCeEEcCCCCchhhhhhc---ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC
Q 006701 206 SVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (634)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (634)
.++...+.++.++.+++++.+++...+...... ...........+.+||. .++..+||+.+..
T Consensus 251 ~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~--------------~~~~v~GvL~l~~ 316 (686)
T PRK15429 251 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM--------------SGDTMLGVLKLAQ 316 (686)
T ss_pred cCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEE--------------ECCEEEEEEEEee
Confidence 455566889999999999999766544322211 01111234566777763 3445788888876
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVAL 330 (634)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l 330 (634)
.....|++++++++..+|+++++|++++..+++.++..+++++++..+
T Consensus 317 ~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~l 364 (686)
T PRK15429 317 CEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 364 (686)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHH
Confidence 677899999999999999999999999999998887777766655443
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.21 E-value=1.5e-10 Score=103.09 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.|+++||++|+. .+.+.+.....++ .+.++|.|+|.||+ ..+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~--------------------~~~i~I~D~G~gi~--~~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH--------------------EVYITVRDEGIGIE--NLEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC--------------------EEEEEEEEcCCCcC--chhHhh
Confidence 566799999999999999863 2445555544332 38999999999997 367899
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
+||++.+.. ..+.|+||+++++ +.+++++++. ++.||+|+++.
T Consensus 94 ~~~~~~~~~---~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 94 EPLYTSKPE---LERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred CCCcccCCC---CCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 999876542 2478999998876 4579999998 89999998864
No 65
>PRK03660 anti-sigma F factor; Provisional
Probab=99.17 E-value=3.5e-10 Score=101.96 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+.+++.|++.||++|+.. +.+.+.....++ .+.++|.|+|.|+++ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~--------------------~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE--------------------ELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC--------------------EEEEEEEEccCCCCh--HHHhh
Confidence 5677999999999999998742 345555443322 389999999999976 56889
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
+||++.+... .+.|+||+++++ +.+.+++++. ++.||+|+++.++....
T Consensus 94 ~~~~~~~~~~---~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~~ 142 (146)
T PRK03660 94 QPLYTTKPEL---ERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKSK 142 (146)
T ss_pred CCCcccCCCC---CCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEecccc
Confidence 9998755422 367999998774 5678999998 89999999999987553
No 66
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.17 E-value=3.6e-09 Score=118.95 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecc--ccccccccccCChhhHHHhcc
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDVFNS 220 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 220 (634)
+..++++++.+.+..+++++|+.+++.+.+.++++.|.||+.|+++..+......+. .......++.+.+.++.+..+
T Consensus 2 L~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~t 81 (748)
T PRK11061 2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81 (748)
T ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhcc
Confidence 356889999999999999999999999999999999999999988876665554443 333344667788999999999
Q ss_pred CCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHH
Q 006701 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (634)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a 300 (634)
++++.+++...++++.........+.++.+++||.. ++..+|++.+.+..++.|++++.+++..+|
T Consensus 82 g~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~--------------~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA 147 (748)
T PRK11061 82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIY--------------RRQLLGVLVVQQRELRQFDESEESFLVTLA 147 (748)
T ss_pred CceEEECCcccCcccccCccccCccceEEEEEEEee--------------CCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 999999999988887543333345567888888743 334799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006701 301 DQVAVALSHAAILEDSM 317 (634)
Q Consensus 301 ~~~a~al~~a~l~~~~~ 317 (634)
.++++++++++..+...
T Consensus 148 ~~aAiAL~na~l~~~~~ 164 (748)
T PRK11061 148 TQLAAILSQSQLTALFG 164 (748)
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999999999876663
No 67
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.15 E-value=6.5e-09 Score=111.80 Aligned_cols=96 Identities=23% Similarity=0.347 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhcCC-----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhc
Q 006701 459 RLMQTILNIVGNAVKFTK-----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~-----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 533 (634)
.+..+++.|++||++|+- .|.+.+.....+. .+.++|.|||+||+++....+...
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~--------------------~i~i~i~Dng~g~~~~~~~~~~~~ 409 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD--------------------VIQISISDNGPGIDEEKLEGLSTK 409 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC--------------------EEEEEEeeCCCCCChhHHHHHHhh
Confidence 356788999999999972 2445555544422 499999999999999876655332
Q ss_pred ccccCCCCCCCCC-ccccHHHHHHHHHHhCCE--EEEEecCCCCceEEEEEEEec
Q 006701 534 FAQSRGSSCQTPR-AGLGLAICRRFVNLMGGH--IWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 534 f~~~~~~~~~~~g-~GlGL~i~k~iv~~~gG~--i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
- ++ .|+||..++++++.+-|. +.++|. +++||.+.+.+|..
T Consensus 410 ~----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~~~~~ 453 (456)
T COG2972 410 G----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQIIIPKR 453 (456)
T ss_pred c----------cCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEEeehh
Confidence 1 12 499999999999999888 689999 99999999999964
No 68
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.12 E-value=3.7e-10 Score=121.88 Aligned_cols=112 Identities=19% Similarity=0.328 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
....|.+++.||+.||+++...+ .+.+.+.....+ ++.+.|.|||+||++++++++|
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iF 93 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVF 93 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhh
Confidence 33446699999999999998653 455544332221 4889999999999999999999
Q ss_pred hcccccCCCC---CCCCCccccHHHHHHHHHHh-CCEEEEEecCCCCceEEEEEEEecCC
Q 006701 532 TKFAQSRGSS---CQTPRAGLGLAICRRFVNLM-GGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 532 ~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~-gG~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
++|+++..-. ....+.|+||+++..+.+.+ ||.+++.|. ++.|++|++.+|+...
T Consensus 94 erF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i~ 152 (659)
T PRK14867 94 GKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSVE 152 (659)
T ss_pred ccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEec
Confidence 9987754321 12236899999999998875 666999998 8999999999999764
No 69
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.11 E-value=6.5e-10 Score=85.65 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQ-RVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 408 (634)
+++|++.++||+||||++|.++++++.. ...+++. +++++.+..+++++..++++++++++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6789999999999999999999999999 7778887 999999999999999999999999998764
No 70
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.03 E-value=3.7e-09 Score=96.51 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|+|++++.....|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED--------------------RLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC--------------------EEEEEEEECCcCCChHHhcccc
Confidence 5566888999999999999864 345555554432 4999999999999998888888
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCC
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNP 590 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~ 590 (634)
.|++..+... ...+.|+||.+++++++. +.+.+. .|+++++.-.+.....+
T Consensus 99 ~p~~~~~~~~-~~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~~~ 149 (161)
T PRK04069 99 GPYDISKPIE-DLREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQVE 149 (161)
T ss_pred CCCCCCCccc-ccCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchhcc
Confidence 8887655432 123669999999999986 566543 58888888777655443
No 71
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=99.01 E-value=6.3e-08 Score=95.11 Aligned_cols=190 Identities=18% Similarity=0.242 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----ccceeeeHHHHHHHHHHHHHHhhhcCC---ceEEEEeCCCC
Q 006701 377 EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE----LDNGPFNLQIVLREVIKLIKPVASCKK---LSMTLIMAPEL 449 (634)
Q Consensus 377 ~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~----l~~~~~~l~~ll~~~~~~~~~~~~~~~---i~~~~~~~~~~ 449 (634)
..+.+|+....+-=.+..++++-+.+........+ .=...+++.++++++.+..+..+...= -.+.++-....
T Consensus 172 ~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 172 NIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 44667777766666666677765443321111101 112357899999999999987776432 23333333333
Q ss_pred CceEEccHHHHHHHHHHHHHHHhhcC-----CCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006701 450 PTYAVGDEKRLMQTILNIVGNAVKFT-----KEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 450 ~~~v~~d~~~l~qvl~nLl~NAik~~-----~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
...+ .-|..|..++.+|+.||++++ ..+. +.|.+...+++ +.|.|+|.|.
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrGG 310 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRGG 310 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCCC
Confidence 3222 368999999999999999975 2233 55555444333 8899999999
Q ss_pred CCCCCChhhhhhcccccCCCCC-------CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006701 521 GVPPQDIPLLFTKFAQSRGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~-------~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
||+.++.+++|+-.|++.+... .-.|.|.||.|+|..++..||++.+.|- .|-||-..+.+......
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~ls~~ 384 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKALSME 384 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccCCcc
Confidence 9999999999998887643311 1138899999999999999999999999 89999999999865444
No 72
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.91 E-value=7.7e-08 Score=105.76 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEE-EEeeccccccccccccCChhhHHHhccC
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL-SYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (634)
+..++++++.+.+..|++++++.+++.+.+.+++++|+|++.|+++..... .+++.........++.+.+.++.++.++
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~ 83 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATG 83 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhcC
Confidence 677999999999999999999999999999999999999999887765433 3333332223345667788999999999
Q ss_pred CeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCC-CCccchhhhHHHHHHH
Q 006701 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELELIDVVA 300 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~-~~~~~~~e~~ll~~~a 300 (634)
+++.+++...+..+.........+..+.+++||. .++..+|++.+.+.. .+.|++++++++..+|
T Consensus 84 ~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~--------------~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA 149 (534)
T TIGR01817 84 NSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIK--------------ADSETIGVLAADRDFRSRERLEEEVRFLEMVA 149 (534)
T ss_pred CeEEecccccCchhhhccccccCCcceEEEEEEc--------------CCCEEEEEEEEEeccccccccHHHHHHHHHHH
Confidence 9999999988877653322334556788899974 344578999888765 5678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006701 301 DQVAVALSHAAILE 314 (634)
Q Consensus 301 ~~~a~al~~a~l~~ 314 (634)
.++++++..++.+.
T Consensus 150 ~~ia~aI~~~~~~~ 163 (534)
T TIGR01817 150 NLIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766554
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.81 E-value=5.3e-08 Score=88.52 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|.|++++.....|
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~gfd~~~~~~~~ 98 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED--------------------RLEIIVSDQGDSFDMDTFKQSL 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC--------------------EEEEEEEEcccccCchhhcccc
Confidence 3445888999999999999853 456666554433 3999999999999999888888
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
.++....... ...+.|+||++++++++ ++.+++. +|+++++...++..+
T Consensus 99 ~~~~~~~~~~-~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~ 147 (159)
T TIGR01924 99 GPYDGSEPID-DLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQ 147 (159)
T ss_pred CCCCCCCCcc-cCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEcccc
Confidence 7766544332 22356999999999998 5777664 468888887665443
No 74
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.79 E-value=1e-07 Score=83.49 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhh
Q 006701 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (634)
|++++++.+++.+.+.++++.++||+.++++..+....+++........++...+.+..++.+++++..++.....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERD---- 76 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-T----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccccc----
Confidence 6789999999999999999999999999998888888887544333346778888999999999987776543322
Q ss_pred cccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006701 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (634)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~ 309 (634)
..+....+.+|+...+ ..+|++.+....+..|++.++++++.+|.+++++++|
T Consensus 77 -----~~~~~s~~~vPl~~~~--------------~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 77 -----FLGIRSLLVVPLRSRD--------------RVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTCEEEEEEEEETT--------------EEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CCCCCEEEEEEEeECC--------------EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1445677788875433 4688888888888899999999999999999999975
No 75
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-06 Score=91.17 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEE--EEeeccccccccccccCChhhHHHhccCC
Q 006701 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
.++++-+.+.+..++.+-|+.+++++...+.++.|.||+.+.++..+++ +.+++........+..+.+.++-+-.+.+
T Consensus 4 ~Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~ae 83 (756)
T COG3605 4 RLRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAE 83 (756)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccC
Confidence 3778888999999999999999999999999999999999999866555 45565555555566778999999999999
Q ss_pred eEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHH
Q 006701 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (634)
|+.+.+.+..++|++.+...+...++-+.+|+.+. +..+||+++.+...|.|.++|.+++.++|.|
T Consensus 84 PlNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~~--------------~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~ 149 (756)
T COG3605 84 PLNLADAQSHPSFKYLPETGEERYHSFLGVPIIRR--------------GRLLGVLVVQQRELRQYDEDEVEFLVTLAMQ 149 (756)
T ss_pred CCChhhhhhCCccccccccchHHHHHhhccceeec--------------CceeEEEEEecccccccchHHHHHHHHHHHH
Confidence 99999999999999766655555566666665443 3469999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006701 303 VAVALSHAAIL 313 (634)
Q Consensus 303 ~a~al~~a~l~ 313 (634)
+|..+.++.+.
T Consensus 150 lA~iva~~el~ 160 (756)
T COG3605 150 LAEIVAQSQLT 160 (756)
T ss_pred HHHHHHhhhhh
Confidence 99999988876
No 76
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.63 E-value=1.3e-06 Score=98.94 Aligned_cols=172 Identities=10% Similarity=0.069 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc---cccccccccCChhhHHHhc
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFN 219 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 219 (634)
...|.++++.+.+..|+.+++..+...+.+.+.++++.|.++|+....+.+ +..+.. ...........+..+.+++
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 457899999999999999999999999999999999999999988766654 222211 1111233346777889999
Q ss_pred cCCeEEcCCCCchhhhhhc-ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHH
Q 006701 220 SAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (634)
+++++..++..-..++... .....++-...+.+||.. ++.++|++++....+..|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~lgvPl~~--------------~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPLAA--------------EGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccceEEeceee--------------CCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988765443332211 223345555566677543 4456888888777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 299 VADQVAVALSHAAILEDSMRARNQLMEQNVA 329 (634)
Q Consensus 299 ~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~ 329 (634)
+|.++++|+++++.+++..+..+.|+++..+
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999888877777555444
No 77
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.63 E-value=1.8e-07 Score=84.71 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccc--ccccccccCChhhHHHhccCCeEEcCCCCchhhh
Q 006701 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
|++++++.+++.+.+.+++++|+|++.+.++......+..+... ..........+.+.+++.+++++.+++......+
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999999999999887776666442 3344555567889999999999999888766554
Q ss_pred hhcccC---------------CCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC-CccchhhhHHHHHH
Q 006701 236 RLLVGR---------------YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVV 299 (634)
Q Consensus 236 ~~~~~~---------------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~ 299 (634)
...... ...+..+.+.+|+. .++..+|++.+....+ +.|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~--------------~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPII--------------SGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEE--------------ETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeeee--------------cccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 322111 14567777888854 3445688888888776 99999999999999
Q ss_pred HHHHHHHH
Q 006701 300 ADQVAVAL 307 (634)
Q Consensus 300 a~~~a~al 307 (634)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 78
>PF14501 HATPase_c_5: GHKL domain
Probab=98.56 E-value=1.2e-06 Score=73.14 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...|..+|.||++||++++.. ..+.+.+...++ .+.|.|++.-.+ +. +.++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~N~~~~---~~-~~~~ 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG--------------------FLVIIIENSCEK---EI-EKLE 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC--------------------EEEEEEEECCCC---cc-cccc
Confidence 4567889999999999998743 234444444332 488999888544 21 2222
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
+. .....+.|+||..+++++++++|++.++.+ +.=.++++.||
T Consensus 58 ----~~---~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~--~~~f~~~i~ip 100 (100)
T PF14501_consen 58 ----SS---SSKKKGHGIGLKNVKKILEKYNGSLSIESE--DGIFTVKIVIP 100 (100)
T ss_pred ----cc---ccCCCCCCcCHHHHHHHHHHCCCEEEEEEE--CCEEEEEEEEC
Confidence 11 123357899999999999999999999987 44455555554
No 79
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.51 E-value=5.8e-06 Score=90.15 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCCh-hhHHHhccCC
Q 006701 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLP-IVTDVFNSAQ 222 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 222 (634)
..++++++.|.+++|++++++.+++.+.+.++++.|+|.+++.+......+.+...... ...++.+.+ .+..++.++.
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~~-~~~~~~geGP~l~av~~~g~ 82 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVL-GRRFALEEHPRLEAILRAGD 82 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHhh-CCccCCCcchHHHHHHhcCC
Confidence 46899999999999999999999999999999999999998865333333333332222 224444444 6788888788
Q ss_pred eEEcCCCCchhhh-hhc-c-cCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHH
Q 006701 223 AMRLPYNCPLARI-RLL-V-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVV 299 (634)
Q Consensus 223 ~~~l~~~~~~~~~-~~~-~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~ 299 (634)
++.+++....+.+ ... . .....+.++.+++||.. ++..+|++.+....+..|++++.+++..+
T Consensus 83 ~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~--------------~~~~~GvL~l~~~~~~~f~~~~~~~l~~~ 148 (509)
T PRK05022 83 PVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFV--------------DGRLIGALTLDALDPGQFDAFSDEELRAL 148 (509)
T ss_pred eEEEecCCCCCcccccccccccccCCcceEEEEEEEE--------------CCEEEEEEEEeeCCCCcCCHHHHHHHHHH
Confidence 8888866544332 111 1 12233556788888643 44569999998888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 300 ADQVAVALSHAAILEDSMRARNQLM 324 (634)
Q Consensus 300 a~~~a~al~~a~l~~~~~~~~~~l~ 324 (634)
|.+++.++.+++.+++.++..+++.
T Consensus 149 a~~~a~Al~~a~~~~~l~~~~~~~~ 173 (509)
T PRK05022 149 AALAAATLRNALLIEQLESQAELPQ 173 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777665544443
No 80
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.35 E-value=3.3e-06 Score=73.69 Aligned_cols=93 Identities=27% Similarity=0.319 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+.-++.+++.||++|+..+ .+.+.+..... .+.+.|.|+|+|+++.....-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~--------------------~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD--------------------RLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC--------------------EEEEEEEECCCCCChhhccCcc
Confidence 44578889999999999999763 34444434333 3999999999999887543221
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006701 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
..-. ......|+||.+++++++.. .+ + .++|++++++
T Consensus 88 ~~~~------~~~~~~G~Gl~li~~l~D~~----~~-~--~~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWEP------DSLREGGRGLFLIRSLMDEV----DY-R--EDGGNTVTLR 124 (125)
T ss_pred cccC------CCCCCCCcCHHHHHHHHcEE----EE-E--CCCeEEEEEE
Confidence 1000 12236699999999999876 44 3 3679988875
No 81
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.33 E-value=3.6e-06 Score=63.63 Aligned_cols=63 Identities=44% Similarity=0.682 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 406 (634)
++++.+.++||+||||+.|.++++.+.+...+++...+++.+.+.++++..++++++++++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999888765566668889999999999999999999998865
No 82
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.33 E-value=1.2e-05 Score=70.91 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEEeccCC-CCeEEEEEeeccc-cccccccccCChhhHHHhccCCeEEcCCCCchhhh
Q 006701 158 DRHTILKTTLVELGRTLGLEECALWMPSRT-GLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
|++++++.+++.+.+.+++++++|++.+++ ..........+.. ......++...+.+..++.+++++.+++.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 467889999999999999999999999984 3333333332222 12334556666888899999988888765543311
Q ss_pred hhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006701 236 RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
.........+....+.+|+.. ++..+|++.+... .++.|+.++++++..++.+++.++++.++.+
T Consensus 81 ~~~~~~~~~~~~s~~~~Pl~~--------------~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVPLVA--------------DGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEeeeee--------------cCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110111111245666667543 3345777777666 6889999999999999999999998887654
Q ss_pred H
Q 006701 315 D 315 (634)
Q Consensus 315 ~ 315 (634)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 3
No 83
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.26 E-value=5.8e-06 Score=83.57 Aligned_cols=116 Identities=21% Similarity=0.362 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhh
Q 006701 457 EKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFT 532 (634)
Q Consensus 457 ~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~ 532 (634)
...|.+++.+|++|++++++.. .+.+.+...+.+ +.++.|.|||+|||+++++++|-
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d-------------------~y~v~veDNGpGIP~e~IPkvFG 94 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKD-------------------HYKVIVEDNGPGIPEEQIPKVFG 94 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCc-------------------eEEEEEecCCCCCChhHhHHHHH
Confidence 4569999999999999999753 344555444322 58999999999999999999997
Q ss_pred cccccCCC--CCCC-CCccccHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecCCCCCC
Q 006701 533 KFAQSRGS--SCQT-PRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGICNNPG 591 (634)
Q Consensus 533 ~f~~~~~~--~~~~-~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f~i~lp~~~~~~~~ 591 (634)
.++-...- ..++ +-.|+|.+.|--..+..-|+ +.|.|...+.++.+.+.+-+......+
T Consensus 95 k~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp 157 (538)
T COG1389 95 KMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEP 157 (538)
T ss_pred HHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcc
Confidence 66432221 1111 23499999888888888776 777776455589899988887665543
No 84
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.22 E-value=1.2e-05 Score=72.15 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccc--cccCC---------hhhHHHhccCCeEE
Q 006701 157 LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPINL---------PIVTDVFNSAQAMR 225 (634)
Q Consensus 157 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~ 225 (634)
.+++++++.+++.+.+.++++.++|++.|+++......+........... .+... +....++.+++++.
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 46789999999999999999999999998887544444443332111111 12211 11122388889988
Q ss_pred cC-CCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHH
Q 006701 226 LP-YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (634)
Q Consensus 226 l~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a 304 (634)
++ +..... ........+..+.+.+||.. ++..+|++.+.+..+..|+++++++++.+|.+++
T Consensus 82 ~~~~~~~~~---~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a 144 (148)
T PF13185_consen 82 INDDDSSFP---PWELARHPGIRSILCVPLRS--------------GGEVIGVLSLYSKEPNAFSEEDLELLEALADQIA 144 (148)
T ss_dssp ESCCCGGGS---TTHHHCCTT-SEEEEEEEEE--------------TTEEEEEEEEEESSTT---HHHHHHHHHHHHHHH
T ss_pred EeCcccccc---chhhhccccCCEEEEEEEeE--------------CCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHH
Confidence 88 111111 12344556778888899753 3356999998888888999999999999999999
Q ss_pred HHHH
Q 006701 305 VALS 308 (634)
Q Consensus 305 ~al~ 308 (634)
++|+
T Consensus 145 ~aie 148 (148)
T PF13185_consen 145 IAIE 148 (148)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9984
No 85
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=2.8e-05 Score=79.26 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhccccc
Q 006701 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (634)
..+.+++.||+.||+++.. ..+.+.+.. ++ ...|.|.|||.||++++++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--GG-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--CC-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4588999999999999754 455555432 22 2569999999999999999999999998
Q ss_pred CCCCC-------CCCCccccHHHHHHHHHHhCCEEEEEecC-CCCceEEEEE
Q 006701 538 RGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEG-LDKGSTVTFL 581 (634)
Q Consensus 538 ~~~~~-------~~~g~GlGL~i~k~iv~~~gG~i~v~s~~-~g~Gt~f~i~ 581 (634)
+.... ..+-.|.||+....+ +++++.|.. .+.+..+.+.
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred CCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 76431 111236677655433 368888862 1444444443
No 86
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.01 E-value=9e-05 Score=65.81 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKE-----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
+-..+.-++.+++.|+++|+.+ |.+.+.+...++ ++.+.|.|.|+|+ +..+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~--------------------~~~i~i~D~G~~~--~~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG--------------------KLEIRIWDQGPGI--EDLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC--------------------eEEEEEEeCCCCC--CCHHHh
Confidence 6778999999999999999865 666676666554 3999999999665 445666
Q ss_pred hhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCc
Q 006701 531 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKG 575 (634)
Q Consensus 531 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~G 575 (634)
+.|.+.+.+.. ...|+||.+++++++ ++.+++. ++.+
T Consensus 95 ~~~~~~~~~~~---~~~G~Gl~l~~~~~D----~~~~~~~-~~~~ 131 (146)
T COG2172 95 LGPGDTTAEGL---QEGGLGLFLAKRLMD----EFSYERS-EDGR 131 (146)
T ss_pred cCCCCCCCccc---ccccccHHHHhhhhe----eEEEEec-cCCc
Confidence 66665444332 234999999998775 5788865 4443
No 87
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.91 E-value=7.5e-05 Score=55.87 Aligned_cols=61 Identities=38% Similarity=0.492 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 404 (634)
+..+...++||++||++.+.+.++.+.+.. ..++....++.+.+.++++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999999999999887653 2566778889999999999999999988763
No 88
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.67 E-value=0.0014 Score=68.02 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCChhhHHHhcc
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINLPIVTDVFNS 220 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 220 (634)
.+.+.+++..+....+.++.+..+.+.+...++++.+++..++.++.....+.+...... .........+.+.+++.+
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 457888999999999999999999999999999999999999988855555544443321 123455678899999999
Q ss_pred CCeEEc-CCCCchh--hhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHH
Q 006701 221 AQAMRL-PYNCPLA--RIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (634)
Q Consensus 221 ~~~~~l-~~~~~~~--~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (634)
+.++.+ +.++... .-........++.++-+.+|+ ..|+..+|++.+....+..|+..-.+.+.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~PL--------------~~~~~~~G~Ltld~~~~~~f~~~~~~~lr 178 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVPL--------------KSGDKLIGALTLDHTEPDQFDEDLDEELR 178 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeeee--------------eeCCeeeeeEEeeeecccccchhHHHHHH
Confidence 999888 3322221 111111222223466666664 45666799999988887789888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 298 VVADQVAVALSHAAILEDSMRARNQLMEQNVALD 331 (634)
Q Consensus 298 ~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~ 331 (634)
.++..++.+..++.+.++..+.++.+.+++.+++
T Consensus 179 ~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~ 212 (550)
T COG3604 179 FLAALAALAVANALLHRELSSLKERLEEENLALE 212 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999998888877777766655443
No 89
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.00012 Score=66.87 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCC--eEEEE-Eeec---ccccccccc-ccCChhhH
Q 006701 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS-YTLN---NQIQIGSSV-PINLPIVT 215 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~-~~~~---~~~~~~~~~-~~~~~~~~ 215 (634)
...+..+++.+....+.+++++.+++.+.+.++.+++.|+..+.+.. ...+. .... ......... +.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T COG2203 3 EALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIG 82 (175)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhh
Confidence 34577888999999999999999999999999999999999887753 10000 0000 000000000 11222345
Q ss_pred HHhccCCeEEcCCCCchhhhhhcccCCCCC-CceEEeecccccCCccccCCCCcccccceEEEEEecCCCCC-ccchhhh
Q 006701 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPP-DIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 293 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~ 293 (634)
.+...+.+..+.+......+.........+ ....+.+|+...+ ..+|++.+...... .|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~~~~--------------~~~G~l~~~~~~~~~~~~~~e~ 148 (175)
T COG2203 83 IALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLIAQG--------------ELLGLLCVHDSEPRRQWSEEEL 148 (175)
T ss_pred hhhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeeeECC--------------EeeEEeeeeccCCCCCCCHHHH
Confidence 556667777777666555443211111111 3455566654332 45667776666655 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006701 294 ELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~ 315 (634)
.++..++.++++++.+++++++
T Consensus 149 ~ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 149 ELLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887765
No 90
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.43 E-value=4.1e-05 Score=67.77 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCC
Q 006701 461 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540 (634)
Q Consensus 461 ~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 540 (634)
..++.+|+.||+++. ...+.|.+...+.+. ..|.|.|||.||+.+++...|....+.+..
T Consensus 4 ~~al~ElI~Ns~DA~-a~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~ 63 (137)
T PF13589_consen 4 EDALRELIDNSIDAG-ATNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKKS 63 (137)
T ss_dssp THHHHHHHHHHHHHH-HHHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHHH
T ss_pred HHHHHHHHHHHHHcc-CCEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCCc
Confidence 468899999999965 345777776654221 579999999999999999988766665441
Q ss_pred ---CCCCCCcccc--HHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 541 ---SCQTPRAGLG--LAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 541 ---~~~~~g~GlG--L~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
....+..|+| +++. .++.++.+.|...+....+++..+.
T Consensus 64 ~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~ 107 (137)
T PF13589_consen 64 EKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDW 107 (137)
T ss_dssp HHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEE
T ss_pred hhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEec
Confidence 1112234666 3333 3688899999855566667766664
No 91
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.34 E-value=0.00076 Score=75.11 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006701 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+..++.+|+.||+++. +..|.+.+. +++ ...|+|.|||.||++++++.+|.++.++|
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~g-------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EGG-------------------LKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eCC-------------------eEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 47789999999999954 566666663 222 26899999999999999999999988876
Q ss_pred CCCC------CCCC-ccccHHHHHHHHHHhCCEEEEEec
Q 006701 539 GSSC------QTPR-AGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~------~~~g-~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
-... .+.| .|-||+.+..+ .++++.|.
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~ 113 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSR 113 (617)
T ss_pred CCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEe
Confidence 5431 1112 35666655443 47888876
No 92
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.31 E-value=0.011 Score=67.60 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecc-cccccccccc-CChhhHHHhcc--
Q 006701 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QIQIGSSVPI-NLPIVTDVFNS-- 220 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~-- 220 (634)
.+..+.+.+....+.++++..+++.+.+..+.+.++|+.+++++..+......+. ....+..+.. ..+....++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 4667788888899999999999999999999999999999888776644322221 1111111111 22233444444
Q ss_pred CCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHH
Q 006701 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (634)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a 300 (634)
+....+.+........ .....+.+.+|| ..++..+|++.+....++.|++++++++..+|
T Consensus 369 ~~~~~~~~~~~~~~~~------~~~~~s~~~vPL--------------~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG------TVDGSAVAAVPL--------------VYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc------ccCCceEEEEeE--------------EECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 4444443222111000 001116666775 34556799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006701 301 DQVAVALSHA 310 (634)
Q Consensus 301 ~~~a~al~~a 310 (634)
.+++.+|...
T Consensus 429 ~~ia~aI~~~ 438 (665)
T PRK13558 429 RAVGAAINAL 438 (665)
T ss_pred HHHHHHHHHH
Confidence 9999999544
No 93
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.98 E-value=0.012 Score=65.52 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh-----
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~----- 529 (634)
+...+.+++.+++.||++.+..| ...|.+....++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg---------------------~I~V~DnGrGIP~~~~~~~~~~~ 92 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG---------------------SVSVRDNGRGIPVGIHPEEGKSG 92 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC---------------------cEEEEEcCCCCCcccccccCCcc
Confidence 45679999999999999976543 233333333322 588999999999998877
Q ss_pred ---hhhcccccCCCCC----CCCC-ccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 530 ---LFTKFAQSRGSSC----QTPR-AGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 530 ---if~~f~~~~~~~~----~~~g-~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
+|.....+..-.. .+.| .|.|++.+..+-+. +.+++. . .|-.+...+.
T Consensus 93 ~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~-r-~g~~~~~~f~ 148 (631)
T PRK05559 93 VEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LEVEVK-R-DGKVYRQRFE 148 (631)
T ss_pred hheeeeeccccCccCCccccccCcccccchhhhhhheee----EEEEEE-e-CCeEEEEEEE
Confidence 7765333221111 1122 58999888777553 455554 2 2344444444
No 94
>PRK05218 heat shock protein 90; Provisional
Probab=95.91 E-value=0.014 Score=64.86 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCCCCChhhhhhcccccC-----------C--CCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006701 512 RVQVNDSGCGVPPQDIPLLFTKFAQSR-----------G--SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f~~~~-----------~--~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.|.|.|||.||+.+++...|...-++. . ...-.+-.|+|+..|-. .+-++.|.|.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~----va~~v~V~Sr 141 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM----VADKVTVITR 141 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh----ccCEEEEEEc
Confidence 589999999999999887664332220 0 11112245888864433 3445666665
No 95
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.0064 Score=67.62 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006701 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
+..-|+.+|+.||+++.. ..|.+...+++ .-.|.|.|||+||++++++-.+.++.|+|
T Consensus 23 rPaSVVKELVENSlDAGA---t~I~I~ve~gG-------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA---TRIDIEVEGGG-------------------LKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC---CEEEEEEccCC-------------------ccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 456789999999998543 44555555544 13499999999999999999999999887
Q ss_pred CCC
Q 006701 539 GSS 541 (634)
Q Consensus 539 ~~~ 541 (634)
-..
T Consensus 81 I~~ 83 (638)
T COG0323 81 IAS 83 (638)
T ss_pred CCc
Confidence 553
No 96
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=95.74 E-value=0.13 Score=40.03 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=59.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHH
Q 006701 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (634)
Q Consensus 351 isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (634)
++|.+||-|+.|.+++.+-.....+++.+..+..+...+..+..+-+.|.. .-....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~---------~~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQ---------SEDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCeecHHHHHHHHHHHH
Confidence 689999999999999999888877888888898888888888877766632 11334799999999998876
Q ss_pred HH
Q 006701 431 KP 432 (634)
Q Consensus 431 ~~ 432 (634)
..
T Consensus 73 ~~ 74 (76)
T PF07568_consen 73 RQ 74 (76)
T ss_pred HH
Confidence 53
No 97
>PRK14083 HSP90 family protein; Provisional
Probab=95.26 E-value=0.0093 Score=65.60 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCC---------CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006701 462 QTILNIVGNAVKFTKE---------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 462 qvl~nLl~NAik~~~~---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
..+.||+.||.++... +.|.+.+. ..+. -.|+|.|||.||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~--------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG--------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC--------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4578999999887532 24444442 2211 578999999999999988765
No 98
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=95.20 E-value=1.1 Score=41.18 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=90.0
Q ss_pred HHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEec------c-CCCCeEEEEEeeccc-cc
Q 006701 131 REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMP------S-RTGLNLELSYTLNNQ-IQ 202 (634)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~------~-~~~~~~~~~~~~~~~-~~ 202 (634)
|....+.+..+-++.+-..+..+-+..++++....++.++..+++.+...++.. + .+...+.+..+.+.- ..
T Consensus 9 rdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~ 88 (174)
T PF11849_consen 9 RDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESL 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhh
Confidence 344445555566777888888999999999999999999999999998777661 1 111223333333321 01
Q ss_pred cccccc-cC----ChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEE
Q 006701 203 IGSSVP-IN----LPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMV 277 (634)
Q Consensus 203 ~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v 277 (634)
.+..+. .. ...+.+++.+++.+.-+ ....+.. +.....-.+
T Consensus 89 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~------------------~~~~ly~----------------~~~~g~~~~ 134 (174)
T PF11849_consen 89 IGQPLDDLLPPEIRAALQQALSSKRSIFEE------------------DHFVLYF----------------PSSSGRESL 134 (174)
T ss_pred cCCcccccCCHHHHHHHHHHHHcCCeEecC------------------CeEEEEE----------------ecCCCCEEE
Confidence 111110 11 12233444443332211 1111111 111122345
Q ss_pred EEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 278 LMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 278 l~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~ 317 (634)
+++... +..++.+.++++.++..++++++|..++++..
T Consensus 135 iyl~~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 135 IYLEGD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544 48899999999999999999999999887754
No 99
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=95.13 E-value=0.071 Score=59.53 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh-----
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~----- 529 (634)
++.-|.+++.+||.||++...+| ...|.+....++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~~~ki~~ 92 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG---------------------SITVTDNGRGIPVDIHPKTGKPA 92 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC---------------------cEEEEEeCccccCCccCCCCCCc
Confidence 55679999999999999955445 233333333322 589999999999864332
Q ss_pred ---hhhcccccCCCCC-----CCCCccccHHHHHHHHH
Q 006701 530 ---LFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 559 (634)
Q Consensus 530 ---if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 559 (634)
+|.....+..-.. ..+-.|.|++.+..+-+
T Consensus 93 ~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 93 VEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred hHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 3332211110000 11124889988877765
No 100
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.74 E-value=0.026 Score=63.05 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.9
Q ss_pred EEEEEEEcCCCCCCCChhhhh
Q 006701 511 LRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~~if 531 (634)
..+.|.|||+||+.+++.+-+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 478999999999998865443
No 101
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.52 E-value=0.23 Score=55.93 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
++.-+.+++.++|.||++...+| ...|.+...+++ .|+|.|||+|||.+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG---------------------SVTVEDNGRGIPVDI 77 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC---------------------cEEEEEeCCCcCccc
Confidence 45679999999999999955444 333333333332 399999999999864
No 102
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.065 Score=58.01 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006701 464 ILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 464 l~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+++||+||.++.. .+...|.+...++. =+++|+|||+||..+++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~--------------------kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN--------------------KTLTISDNGIGMTKDEVI 91 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC--------------------CEEEEEeCCCCCCHHHHH
Confidence 6688999877521 12455666555543 378999999999987664
Q ss_pred h
Q 006701 529 L 529 (634)
Q Consensus 529 ~ 529 (634)
.
T Consensus 92 ~ 92 (623)
T COG0326 92 E 92 (623)
T ss_pred H
Confidence 3
No 103
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=3.8 Score=36.32 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHH
Q 006701 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (634)
Q Consensus 346 ~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (634)
-+.+.+.||+-.|..+|.+-+++|.+...++ +.++.|..++..++ ..++|+|+.-|.....-..+|-.+.
T Consensus 17 lLcsRvCHDiISPvgAInnGLeLLdeg~add---DAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea--- 86 (214)
T COG5385 17 LLCSRVCHDIISPVGAINNGLELLDEGGADD---DAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA--- 86 (214)
T ss_pred HHHHHHHhhccCcHHHhhchhhhhccCCccH---HHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhH---
Confidence 3566789999999999999999998876554 34666666665554 3466777754433322234454433
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccC
Q 006701 426 VIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVS 504 (634)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~ 504 (634)
.+..+..+....-+++.+.+... + .+.+ ...+.|++.-|-..-+.|+ +.+.+...+.+
T Consensus 87 -ek~A~~~~a~ekpe~~W~g~r~~---~--~Kn~-vkllLNl~lia~~aiPrGG~~~vtle~~e~d-------------- 145 (214)
T COG5385 87 -EKAAQDFFANEKPELTWNGPRAI---L--PKNR-VKLLLNLFLIAYGAIPRGGSLVVTLENPETD-------------- 145 (214)
T ss_pred -HHHHHHHHhccCCcccccCChhh---c--Ccch-HHHHHHHHHHHcccCCCCCeeEEEeecCCcC--------------
Confidence 22223333333344444332221 2 2222 2456777777766667655 33333322222
Q ss_pred CCCceEEEEEEEEcCCC--CCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006701 505 TDGHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 505 ~~~~~~l~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
-+|+|.-.|+- ++++. .+-. ...+....-.+...-=+-.--+++.-|++|.++.. +.-..|+-.+
T Consensus 146 ------~rfsi~akG~m~Rvppk~----lel~-~G~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~v 212 (214)
T COG5385 146 ------ARFSIIAKGRMMRVPPKF----LELH-SGEPPEEAVDAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAWV 212 (214)
T ss_pred ------ceEEEEecCccccCCHHH----Hhhh-cCCCccccCCCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEec
Confidence 35666555553 33332 2221 11111111123334445556678999999999997 4556665544
Q ss_pred E
Q 006701 583 K 583 (634)
Q Consensus 583 p 583 (634)
|
T Consensus 213 ~ 213 (214)
T COG5385 213 V 213 (214)
T ss_pred c
Confidence 3
No 104
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=94.06 E-value=0.63 Score=44.95 Aligned_cols=160 Identities=12% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhh----hhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeec
Q 006701 123 KNRADELDREMGL----ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (634)
Q Consensus 123 ~~~~~~l~~~~~~----~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (634)
++..++++.+.++ .+..++....+.++...+....++++++......+.+.++++.+.+++.++........ .
T Consensus 53 R~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~---~ 129 (225)
T PF04340_consen 53 RERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSL---T 129 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccch---h
Confidence 3444444444443 34444445678899999999999999999999999999999999999987654421100 0
Q ss_pred cccccccccccCChhhHH----HhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccce
Q 006701 199 NQIQIGSSVPINLPIVTD----VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (634)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (634)
. .+......... .+..+.+..-+ .......... +....+..+...+||. .+..
T Consensus 130 ~------~~~~~~~~~~~~~~~~l~~~~p~~G~-~~~~~~~~lF-~~~~~~v~S~AlipL~---------------~~~~ 186 (225)
T PF04340_consen 130 D------HVWLSRDAFAQVFIDLLGLQQPYCGR-LSEEEAALLF-GDEAAQVGSVALIPLG---------------SGRP 186 (225)
T ss_dssp ----------E-HHHHHHHHCCCHTT---CCCS---HHHHHHHH-HHCHCC-SEEEEEEEE---------------SSSE
T ss_pred h------cccccHHHHHHHHHHHhCCCCceeCC-CCcchhHHhc-CCCCccccchheeecc---------------CCCc
Confidence 0 00000001111 11111221111 1111111100 1122344555566653 2235
Q ss_pred EEEEEecCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 006701 275 VMVLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 308 (634)
Q Consensus 275 ~~vl~~~~~~~~~~~~~-e~~ll~~~a~~~a~al~ 308 (634)
+|++++.+..+..|+++ ...+++.+|.-++.++.
T Consensus 187 ~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~ 221 (225)
T PF04340_consen 187 IGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALE 221 (225)
T ss_dssp EEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGG
T ss_pred eEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHh
Confidence 78888888887788766 68889999988887764
No 105
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.83 E-value=0.18 Score=56.17 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcC---CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC--------hh
Q 006701 460 LMQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------IP 528 (634)
Q Consensus 460 l~qvl~nLl~NAik~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~--------~~ 528 (634)
..+++.++|.||++-. ....|.|.+ ..++ .|+|.|||.|||.+. .+
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i--~~d~---------------------~I~V~DnGrGIp~~~h~~~g~~~~e 87 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVIL--HQDQ---------------------SIEVFDNGRGMPVDIHPKEGVSAVE 87 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEE--eCCC---------------------eEEEEecCCccCcccccccCCcHHH
Confidence 4678889999999833 334444444 3222 589999999999988 66
Q ss_pred hhh-hcccccCCCCC---CCC-CccccHHHHHHHHHH
Q 006701 529 LLF-TKFAQSRGSSC---QTP-RAGLGLAICRRFVNL 560 (634)
Q Consensus 529 ~if-~~f~~~~~~~~---~~~-g~GlGL~i~k~iv~~ 560 (634)
-+| ...-+++-... .+. -.|.|++.+..+-+.
T Consensus 88 ~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 88 VILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred HhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 666 33322222111 112 258999988887763
No 106
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=93.24 E-value=0.11 Score=57.58 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006701 460 LMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 460 l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
|.+++.+|+.||++....| ...|.+....++ .|+|.|||.|||.+..
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h 49 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN---------------------SISVEDNGRGIPVEIH 49 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC---------------------eEEEEEeCCceeCCcc
Confidence 3457789999999987443 233333333221 5899999999997654
No 107
>PTZ00130 heat shock protein 90; Provisional
Probab=92.57 E-value=0.13 Score=57.91 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCCCCChhh
Q 006701 512 RVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~ 529 (634)
.|+|.|||.||+.+++..
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 688999999999987643
No 108
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.44 E-value=0.24 Score=42.51 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCC
Q 006701 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~ 525 (634)
..+.-+..+|+.||+||...|.+++.....+.. +.+.|.+.-.+=...
T Consensus 62 hsvgYl~NELiENAVKfra~geIvieasl~s~~--------------------f~~kvsN~vd~~t~~ 109 (184)
T COG5381 62 HSVGYLANELIENAVKFRATGEIVIEASLYSHK--------------------FIFKVSNIVDLPTTI 109 (184)
T ss_pred hhHHHHHHHHHHhhhcccCCCcEEEEEEeccce--------------------EEEEecccCCCccHH
Confidence 345667889999999999999888888776543 778887765554333
No 109
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=91.97 E-value=7.7 Score=34.50 Aligned_cols=118 Identities=9% Similarity=0.080 Sum_probs=81.3
Q ss_pred HHHHHHhhcC-CceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCC
Q 006701 166 TLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVP 244 (634)
Q Consensus 166 ~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 244 (634)
+..-+.+.+. .+=+.+|+.+++...+ +.=.+...-..++.+.+.++.+.++++.+.+++....+- ...-.+
T Consensus 40 ~sall~~~l~~~nW~GFYl~~~~~LvL----gPFqG~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g----hiaCD~ 111 (163)
T COG1956 40 ASALLKERLPDVNWVGFYLLEGDELVL----GPFQGKVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG----HIACDA 111 (163)
T ss_pred HHHHHHhhccCCceEEEEEecCCeEEE----ecccCCcceEEeccCcchhHHHHhcCCeEEecccccCCC----cccccc
Confidence 3333333333 5567778887433322 211222455678889999999999999999998776442 122334
Q ss_pred CCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHH
Q 006701 245 PDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAV 305 (634)
Q Consensus 245 ~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~ 305 (634)
...+.+.+|+.. ++..+|++=..+.....|++++...++.++..+.-
T Consensus 112 as~SEIVvPi~~--------------~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~ 158 (163)
T COG1956 112 ASNSEIVVPIFK--------------DGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEK 158 (163)
T ss_pred ccCceEEEEEEE--------------CCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 566778888744 45579999999999999999999999988876643
No 110
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=91.89 E-value=0.49 Score=53.53 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006701 458 KRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.-|.+++.+++.||++-+-+| ...|.+....++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg---------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG---------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCCC---------------------eEEEEEcCCcccCCc
Confidence 569999999999999955444 333333333322 589999999999873
No 111
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=91.43 E-value=12 Score=34.71 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCc
Q 006701 360 HAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKL 439 (634)
Q Consensus 360 ~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i 439 (634)
.+|.+.+++|.++..+++ +..++.|.+++......++ |.|+--|.... -+.++..++- +.++...+...+
T Consensus 2 GAI~NGLELL~~~~~~~~-~~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~----~~~~~~~~~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDPEM-RPAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEAR----SVLRGYFAGGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCccc-hHHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHH----HHHHHHHhCCce
Confidence 357778888887654333 3378888888887776654 44543333221 3456665543 333334444555
Q ss_pred eEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEc
Q 006701 440 SMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDS 518 (634)
Q Consensus 440 ~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~ 518 (634)
++....+.+. . ++ ..-+++.|++.=+....+.| .+.+......++ ..+.|.=+
T Consensus 72 ~l~W~~~~~~---~--~k-~~vklllnl~l~a~~alprGG~i~V~~~~~~~~--------------------~~~~v~a~ 125 (182)
T PF10090_consen 72 TLDWQVERDL---L--PK-PEVKLLLNLLLCAEDALPRGGEITVSIEGSEGD--------------------GGWRVRAE 125 (182)
T ss_pred EEEccCcccc---C--CH-HHHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC--------------------ceEEEEEe
Confidence 5555443331 1 22 23488888888888887764 455553333332 46777777
Q ss_pred CCCCC--CCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006701 519 GCGVP--PQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 519 G~Gi~--~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
|..+. ++...-+ . .......-.....=.+....+++..|++|.++..
T Consensus 126 G~~~~~~~~~~~~L-~----g~~~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 126 GPRARLDPDLWAAL-A----GEDPEEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred ccccCCCHHHHHHh-c----CCCCCCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 77543 3222211 1 1111111123355577888999999999999886
No 112
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=89.29 E-value=0.46 Score=50.45 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCC
Q 006701 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 460 l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
-..++.+|+.|++++. ...|.+...+++ -=.+.|+|||.||..++++-+.++|.++|-
T Consensus 28 P~NAlKEliENSLDA~---ST~I~V~vk~GG-------------------LKLlQisDnG~GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 28 PVNALKELIENSLDAN---STSIDVLVKDGG-------------------LKLLQISDNGSGIRREDLPILCERFTTSKL 85 (694)
T ss_pred hHHHHHHHHhccccCC---CceEEEEEecCC-------------------eEEEEEecCCCccchhhhHHHHHHhhhhhc
Confidence 3457889999999754 344555555544 134678899999999999999999988764
Q ss_pred C
Q 006701 540 S 540 (634)
Q Consensus 540 ~ 540 (634)
.
T Consensus 86 ~ 86 (694)
T KOG1979|consen 86 T 86 (694)
T ss_pred c
Confidence 4
No 113
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=87.93 E-value=0.61 Score=50.73 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCC
Q 006701 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 460 l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
+.-++.+|+.|+++.. ...+.+...+-+ .=.|+|+|||.||++.+.+-+-.++++.+-
T Consensus 21 l~sAVKELvENSiDAG---AT~I~I~~kdyG-------------------~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAG---ATAIDIKVKDYG-------------------SDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccC---CceeeEecCCCC-------------------cceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 5588999999999754 344444444332 136999999999999988887777777654
Q ss_pred C
Q 006701 540 S 540 (634)
Q Consensus 540 ~ 540 (634)
.
T Consensus 79 ~ 79 (672)
T KOG1978|consen 79 V 79 (672)
T ss_pred c
Confidence 3
No 114
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.58 E-value=3.1 Score=30.84 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006701 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTL 395 (634)
Q Consensus 347 l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~l 395 (634)
.++..-||+.|-|+.|.|++++ ...++..++++.+....+..+.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999877 33456677777777766665443
No 115
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=87.11 E-value=9.8 Score=41.52 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=45.2
Q ss_pred HHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc--ccccccccc
Q 006701 151 HEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPI 209 (634)
Q Consensus 151 ~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (634)
..+.++.++.+++..++++++++.|.|++-+|-.++|+..-.++..-.+. ..-|..+|.
T Consensus 140 ~~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~~G~VIAEak~e~LesyLGl~yPa 200 (750)
T COG4251 140 NRLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAKREDLESYLGLRYPA 200 (750)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcCCceEEEEeecCCCCccEEeccccccchhhhcccCCc
Confidence 37889999999999999999999999999999999988765554433322 233444444
No 116
>PLN03237 DNA topoisomerase 2; Provisional
Probab=83.82 E-value=1.5 Score=52.82 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhcC-CC---CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh-----
Q 006701 458 KRLMQTILNIVGNAVKFT-KE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP----- 528 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~-~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~----- 528 (634)
.-|..+|.++|.||++.. .. ..+.|.+...+ -.|+|.|||.|||-+..+
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~----------------------gsIsV~DnGRGIPV~iH~~eg~~ 133 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ----------------------NLISVYNNGDGVPVEIHQEEGVY 133 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC----------------------CEEEEEecCccccCCCCCCCCCc
Confidence 457888888888888876 32 23333333221 258999999999976432
Q ss_pred ---hhhhcccccCCCCC-----CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006701 529 ---LLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 529 ---~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
-||....++..-.+ ..+-.|.|.+.|.-+-+.+--++. + ...|-.|..++-
T Consensus 134 ~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev~---D-g~~gk~y~Q~f~ 192 (1465)
T PLN03237 134 VPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETA---D-GKRQKKYKQVFS 192 (1465)
T ss_pred cceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEEE---E-CCCCeEEEEEEe
Confidence 23333322211111 111248898887776665443332 1 124566665554
No 117
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=83.12 E-value=0.93 Score=50.63 Aligned_cols=50 Identities=32% Similarity=0.470 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
++.-|.+++.++|.||++-+.+|. -.|.+....+ -.|+|.|||.|||.+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d---------------------gsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD---------------------NSITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcCC---------------------CeEEEEECCCcccCcc
Confidence 456788999999999998654332 2233333222 2589999999999753
No 118
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=81.94 E-value=1.7 Score=47.43 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhccccc
Q 006701 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (634)
..|.|++.+|+-|++++. +..+.+.+... ...+.|.|+|.|+..+++..+-++|++.
T Consensus 20 ~sla~~VeElv~NSiDA~-At~V~v~V~~~----------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAE-ATCVAVRVNME----------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccC-ceEEEEEecCc----------------------eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 358899999999999854 33444444322 2789999999999999999999998886
Q ss_pred C
Q 006701 538 R 538 (634)
Q Consensus 538 ~ 538 (634)
+
T Consensus 77 K 77 (1142)
T KOG1977|consen 77 K 77 (1142)
T ss_pred h
Confidence 4
No 119
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=79.20 E-value=19 Score=26.88 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDD 398 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ 398 (634)
+.+++..+++.+.+.|+++...++.+.... .+++..+.++.+.+.+.....-+.+
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R~ 58 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLREALQELRR 58 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998888532 3344555555555554444433333
No 120
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=78.12 E-value=3.4 Score=49.91 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh----
Q 006701 458 KRLMQTILNIVGNAVKFTK----EGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---- 528 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~----~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---- 528 (634)
.-|..++.++|.||++... .|. -.|.+....+. =.|+|.|||.|||-+..+
T Consensus 56 pGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~--------------------g~IsV~dnGrGIPv~~h~~~~~ 115 (1388)
T PTZ00108 56 PGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN--------------------GEISVYNDGEGIPVQIHKEHKI 115 (1388)
T ss_pred chhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC--------------------CeEEEEecCCcccCCCCCCCCC
Confidence 3588888888888888654 222 33333333321 258999999999976532
Q ss_pred ----hhhhcccccCCCCCC-----CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 529 ----LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 529 ----~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
-+|....+...-... .+-.|.|.+.|..+-+. +.|+......|-.|..++--
T Consensus 116 ~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~----f~Vev~r~~~gk~y~q~f~~ 176 (1388)
T PTZ00108 116 YVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTK----FTVECVDSKSGKKFKMTWTD 176 (1388)
T ss_pred ccceEEEEEeeccccCCCCceeeecccccCCccccccccce----EEEEEEECCCCCEEEEEecC
Confidence 234333222111111 11238888777665544 44444311236666666653
No 121
>PLN03128 DNA topoisomerase 2; Provisional
Probab=77.68 E-value=3 Score=49.56 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh-------
Q 006701 458 KRLMQTILNIVGNAVKFT-KEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP------- 528 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~-~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~------- 528 (634)
.-|.+++.++|.||++.. .+|. -.+.+....++ =.|+|.|||.|||-+..+
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~d--------------------gsIsV~DnGrGIPv~ih~~~g~~~~ 110 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQ--------------------NTISVYNNGKGIPVEIHKEEGVYVP 110 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCC--------------------CeEEEEecCccccCCCCCCCCCccc
Confidence 458889999999999876 3222 23333333222 268999999999976432
Q ss_pred -hhhhcccccCCCCCC-----CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006701 529 -LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 529 -~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
-+|....++..-... .+-.|.|.+.|..+-+. +.++......|-.|..++--
T Consensus 111 ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~----f~Vev~d~r~gk~y~q~f~~ 168 (1135)
T PLN03128 111 ELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE----FTVETADGNRGKKYKQVFTN 168 (1135)
T ss_pred eEEEEeeccccccCCccceeeccccCCCCeEEEeecCe----EEEEEEECCCCeEEEEEeCC
Confidence 233222221111111 11237887766555443 44444212345666666543
No 122
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=77.53 E-value=1.4 Score=48.95 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCCC---C-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh----
Q 006701 458 KRLMQTILNIVGNAVKFTKE---G-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~---g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 529 (634)
.-|.+++.++|.||++.... | ...|.+... + -.++|.|||.|||-+..+.
T Consensus 44 ~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-d---------------------gsisV~dnGrGIPv~~h~~~~g~ 101 (602)
T PHA02569 44 PGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-N---------------------NQVTVSDNGRGIPQAMVTTPEGE 101 (602)
T ss_pred ccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-C---------------------CEEEEEECCCcccCCcccccccc
Confidence 34666777777777775432 2 223333333 2 2589999999999865421
Q ss_pred -------hhhcccccCCC----CCCCCCccccHHHHHHHHHHhC
Q 006701 530 -------LFTKFAQSRGS----SCQTPRAGLGLAICRRFVNLMG 562 (634)
Q Consensus 530 -------if~~f~~~~~~----~~~~~g~GlGL~i~k~iv~~~g 562 (634)
+|....+...- ....+-.|.|.+.+..+-+.+-
T Consensus 102 ~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 102 EIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred cccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 12111111110 0012235889888877766553
No 123
>PRK10963 hypothetical protein; Provisional
Probab=75.87 E-value=77 Score=30.43 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhhh----chHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccC
Q 006701 123 KNRADELDREMGLIL----TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 186 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~----~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 186 (634)
+++..+++.+..++- +.++..+.+.++..++....+.++++.... .+.+.++++.+++++.++
T Consensus 50 R~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~ 116 (223)
T PRK10963 50 RNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPD 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecc
Confidence 444455555444333 333334567888888999999999999996 789999999999988765
No 124
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=70.82 E-value=1.2 Score=48.29 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006701 458 KRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
.-|.+++.+.+.||++-+=+| .+.|.+. .++ .++|.|||.|||-+..+
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~--~d~---------------------sisV~DnGRGIPvdiH~ 85 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLH--EDG---------------------SISVEDNGRGIPVDIHP 85 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEc--CCC---------------------eEEEEECCCCCccccCC
Confidence 557777778888888765443 3333332 222 58999999999987633
No 125
>COG5393 Predicted membrane protein [Function unknown]
Probab=70.74 E-value=27 Score=29.10 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 51 YRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHI 108 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~~a~~l~~~ 108 (634)
+-.+-++|++|.+..- -++.+|.+| |.|.+-+.+-...+++.++.+...|++
T Consensus 53 m~gLtl~fa~~~lmsL--~vLvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~l 104 (131)
T COG5393 53 MAGLTLLFAAFGLMSL--MVLVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWTL 104 (131)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554432 145567777 455554555566666677777778883
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=68.84 E-value=1.6 Score=42.12 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred hHHHHHHh-hhHH----H---HHHHhhHHHHHHHHHHhcCCC
Q 006701 16 LLVRYQYI-SDIL----I---ALAYFSIPVELIYFVQKSAFF 49 (634)
Q Consensus 16 ~~~~~~~~-s~~~----i---~~a~~~i~~~~~~~~~~~~~~ 49 (634)
+|+|+.+| ||.. + .+|...|-+.++.|+.||+-+
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLL 77 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLL 77 (381)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777666 7642 2 233344455566666777743
No 127
>PRK05415 hypothetical protein; Provisional
Probab=68.16 E-value=91 Score=31.94 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH--------HHhhhhch---HHHhHHHHHHHHHH
Q 006701 85 VVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDR--------EMGLILTQ---EETGRHVRMLTHEI 153 (634)
Q Consensus 85 ~~~~~~~~~~a~vs~~~a~~l~~~~p~~l~~~s~~~~~~~~~~~l~~--------~~~~~~~~---~~~~~~l~~l~~~i 153 (634)
|+....-++.+++.++.+...++..-.+.+++..+.......+-++. -.+.+.+. .+.........+.+
T Consensus 98 wlg~~~~~~~~~~~~~~~~~~~rE~~~l~rL~~~~~~r~~a~~l~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~r~~~~~ 177 (341)
T PRK05415 98 WLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQRAHLRDEARALLHSHDVGEARAFCEKLAKQAGIPQLHPALQRWQASL 177 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhCCCcccHHHHHHHHhh
Confidence 33344455666666666677777777777776655543322211110 01111111 12233445556667
Q ss_pred hcccchHHHHHHHHHHHHhh
Q 006701 154 RSTLDRHTILKTTLVELGRT 173 (634)
Q Consensus 154 ~~~ld~~~il~~~~~~l~~~ 173 (634)
.+..|..+++.-.-+++...
T Consensus 178 ~~~~~~~e~l~L~e~~vl~~ 197 (341)
T PRK05415 178 HETHNDAELLRLYEREVLPP 197 (341)
T ss_pred cccCCHHHHHHHHHHHhhHH
Confidence 77777777777666555443
No 128
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=67.74 E-value=0.96 Score=51.53 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006701 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
+..-|.+++.++|.||++-.-.|. -.|.+....++ .++|.|||.|||-+..
T Consensus 126 ~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg---------------------sItV~DnGRGIPvd~h 177 (903)
T PTZ00109 126 DEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG---------------------SVEISDNGRGIPCDVS 177 (903)
T ss_pred CCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC---------------------eEEEEeCCcccccccc
Confidence 344577788888888888655443 22333332222 5899999999997543
No 129
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=66.84 E-value=51 Score=26.02 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHH
Q 006701 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (634)
Q Consensus 351 isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (634)
+.|.+||-++.+.+....-.+...+. .++.+.+......|...-+-+ . .-....++|.++++..+..+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~--~~~~~~~~~Rl~ALa~a~~ll---~-------~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASV--EEFAEAFSGRLQALARAHDLL---S-------RSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHHHHHH---h-------cCCCCCccHHHHHHHHHHhc
Confidence 67999999999999998877654333 234444444444443333221 1 22345789999999888766
Q ss_pred HH
Q 006701 431 KP 432 (634)
Q Consensus 431 ~~ 432 (634)
..
T Consensus 70 ~~ 71 (83)
T PF07536_consen 70 GS 71 (83)
T ss_pred cC
Confidence 53
No 130
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=65.29 E-value=1.2e+02 Score=30.21 Aligned_cols=111 Identities=10% Similarity=-0.001 Sum_probs=54.3
Q ss_pred HHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH-------
Q 006701 59 GSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDR------- 131 (634)
Q Consensus 59 ~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~~a~~l~~~~p~~l~~~s~~~~~~~~~~~l~~------- 131 (634)
+.|.++.|.--.-.+...|.-+. |+-...-++.+++.++.+...++..-.+.+++..+.+.....+-+..
T Consensus 23 ~l~~~~~~~~~~~~i~~~~~~~~---wLg~~~~~l~~~~~l~~~~~~~rE~~~l~RL~~~~~~r~~a~~ll~~~~~~~a~ 99 (289)
T TIGR01620 23 VLFGLAFVLQAVQWIRNLFQRSD---WLGLTATIALIVIIFAGLALVGREWRRLMRLNARQSLKADAETASLDKSPKPGR 99 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHH
Confidence 33444444443344444443322 33333455555555555566777777777776655543222211110
Q ss_pred -----HHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q 006701 132 -----EMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (634)
Q Consensus 132 -----~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~ 172 (634)
.......+.+.........+.+.+..|.++++.-.-+++-.
T Consensus 100 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~d~~ell~L~e~~vL~ 145 (289)
T TIGR01620 100 AIVCRLNAVLSGRAETAPGRAAWKETENEVIDGPELIELAEREVLV 145 (289)
T ss_pred HHHHHHHHHhcCCccccHHHHHHHHhccccCCHHHHHHHHHHHhch
Confidence 01111111222334566667777778888777766665543
No 131
>COG4377 Predicted membrane protein [Function unknown]
Probab=64.98 E-value=16 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Q 006701 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILC 65 (634)
Q Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~c 65 (634)
|+|+.++|+..+++.+|+-++..+-+++-..+|.++.
T Consensus 15 aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~ 51 (258)
T COG4377 15 AIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFS 51 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 7889999999999999998888887777666676654
No 132
>PRK10263 DNA translocase FtsK; Provisional
Probab=60.03 E-value=68 Score=38.81 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=12.2
Q ss_pred hhhH---HHHHHHhhHHHHHHH
Q 006701 23 ISDI---LIALAYFSIPVELIY 41 (634)
Q Consensus 23 ~s~~---~i~~a~~~i~~~~~~ 41 (634)
+||+ +++++.|.||+.+++
T Consensus 71 LAD~L~~LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 71 LADTLFFIFGVMAYTIPVIIVG 92 (1355)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4554 456678888876643
No 133
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.67 E-value=94 Score=30.06 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=32.9
Q ss_pred HHHHHHhhhHHHHHHH---hhHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHhh
Q 006701 17 LVRYQYISDILIALAY---FSIPVELIYFVQKSA--FFPYRWVLMQFGSFIILCG 66 (634)
Q Consensus 17 ~~~~~~~s~~~i~~a~---~~i~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~cg 66 (634)
.+|.|+.+|.....+- |.+|+.++++..... -++-.|.+.+|..+ ++||
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~-la~~ 156 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLA-LALL 156 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHH-HHHH
Confidence 6799999999998886 788888888866542 23444444434443 3444
No 134
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.12 E-value=2.3e+02 Score=28.91 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (634)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 403 (634)
-.+.+++..+.++.-...++|+-+. |..+...++.++.. .+++..+.++.+++...+....+.|+-.+.
T Consensus 23 Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 23 YKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3344555555677888888888775 34554444444433 456677888888888888888888776543
No 135
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=56.38 E-value=13 Score=27.50 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=31.9
Q ss_pred CCCCCceEEeecccccCCcc--------ccCCCCcccccceEEEEEecCCCCCccchh
Q 006701 242 YVPPDIVAVRVPLLHLSNFQ--------INDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (634)
Q Consensus 242 ~~~~~~~~~~~pl~~~~~~~--------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 291 (634)
+..+....+++.|.+.++-| ...|++|++|.|.+.|.+....+ .|+..
T Consensus 2 y~~~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~--~~~~~ 57 (66)
T PF07495_consen 2 YSNPENIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG--KWSSD 57 (66)
T ss_dssp TTCCTTEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS---B-SS
T ss_pred CCCCCceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC--CcCcc
Confidence 44566777788776665432 34688999999999999988877 45443
No 136
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=50.62 E-value=31 Score=28.84 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHhcCCCC--hhHHHH
Q 006701 31 AYFSIPVELIYFVQKSAFFP--YRWVLM 56 (634)
Q Consensus 31 a~~~i~~~~~~~~~~~~~~~--~~~~~~ 56 (634)
..-+++..++.++.|+.|+. |||.+.
T Consensus 69 ~l~~~s~~lLI~WYR~gdl~Pkfr~li~ 96 (118)
T PF10856_consen 69 LLICISAILLIFWYRQGDLDPKFRYLIY 96 (118)
T ss_pred HHHHHHHHhheeehhcCCCChhHHHHHH
Confidence 34444455555555555442 444443
No 137
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=49.77 E-value=1.8e+02 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHhhhHHHHHHHhhHHHHHHHH-HHhcCCCChhHHHHHHHHHH
Q 006701 20 YQYISDILIALAYFSIPVELIYF-VQKSAFFPYRWVLMQFGSFI 62 (634)
Q Consensus 20 ~~~~s~~~i~~a~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~f~ 62 (634)
.....+.+++++++.-.+.+.+. .+||+.+|...++++....+
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v~ 97 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISVL 97 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 34557778887777777666665 45567788888877665555
No 138
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=49.50 E-value=21 Score=40.24 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHHHhh-cCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006701 455 GDEKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 455 ~d~~~l~qvl~nLl~NAik-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
+-..-|++|+.+++.||.. -..++--++.+...... -.++|.|||.|||-+..
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 3445699999999999998 33333333333333332 47999999999997643
No 139
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=48.95 E-value=56 Score=23.73 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=25.6
Q ss_pred HHHHHHHhhHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Q 006701 26 ILIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSFII 63 (634)
Q Consensus 26 ~~i~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~f~~ 63 (634)
++.++..+.|.+.++|+.|.+ +.--++++..++ +|++
T Consensus 5 S~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~v-Ay~l 42 (58)
T PF10966_consen 5 SFGAIGLMFISVILIYFSRYKLKGKFLKFIVSLV-AYIL 42 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHH
Confidence 356778889999999999966 433566666644 4444
No 140
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=46.60 E-value=98 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHH
Q 006701 32 YFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT 68 (634)
Q Consensus 32 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~ 68 (634)
++.+|+.++++.+||+....+..++-..+|+++....
T Consensus 2 ~~~~pi~l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vl 38 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKKISWKPFILGALVFFVFAQVL 38 (223)
T ss_pred eehHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4678999888899888776666666666677766644
No 141
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=46.04 E-value=1.5e+02 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHhhh
Q 006701 101 TALMLVHIIPDLLSVKTRELFLKNRADELDREMGLI 136 (634)
Q Consensus 101 ~a~~l~~~~p~~l~~~s~~~~~~~~~~~l~~~~~~~ 136 (634)
.+++.+.+++-+..+...-.........++++...+
T Consensus 10 f~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 10 FAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333344444444444332222233334444444433
No 142
>COG4708 Predicted membrane protein [Function unknown]
Probab=45.23 E-value=1.2e+02 Score=26.56 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred hHHHHHHHhhHHHHH--HHHHHhcCCCChhHHHHH-HHHHHHHhhHHHHhHHh
Q 006701 25 DILIALAYFSIPVEL--IYFVQKSAFFPYRWVLMQ-FGSFIILCGLTHFISLW 74 (634)
Q Consensus 25 ~~~i~~a~~~i~~~~--~~~~~~~~~~~~~~~~~~-~~~f~~~cg~~~~~~~~ 74 (634)
|.+.+..--.|-+.| ++|.+..||.-|+.++-- |..|.++.-++-+..+|
T Consensus 74 Dv~~G~~sT~I~l~Lgv~~f~ky~Kdy~~ngi~~k~~i~~~i~fsism~~ia~ 126 (169)
T COG4708 74 DVFVGGLSTLIFLSLGVILFSKYSKDYLFNGIINKAFIFFSILFSISMFIIAM 126 (169)
T ss_pred HHHhccHHHHHHHHHHHHhhhhhhhhhhhcccchhhhhhccHHHHHHHHHHHH
Confidence 344443333444444 899999999877766554 44444444444444443
No 143
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=45.12 E-value=1.6e+02 Score=33.30 Aligned_cols=169 Identities=8% Similarity=0.067 Sum_probs=99.0
Q ss_pred HHHhHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEE---Ee----eccccccc----ccc
Q 006701 140 EETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS---YT----LNNQIQIG----SSV 207 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~---~~----~~~~~~~~----~~~ 207 (634)
.++...+..++..+-. -.+....+..++-.+...+.+.+|.+.+++......... .. ...+.... ...
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (707)
T KOG3689|consen 163 RKRNQVLLDLADLMFEEQTDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKK 242 (707)
T ss_pred HHHHHHHhhhhhHHHHHhcchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHh
Confidence 3334444444443333 345566666666666777788899998887655432211 00 00000000 111
Q ss_pred ccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCc
Q 006701 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRK 287 (634)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~ 287 (634)
..+....+.+-.++....+++......+.........+....+++|+... .+...+....+++..+..
T Consensus 243 ~ld~~l~g~va~t~~~~ni~~~~~~~~f~~q~d~~~~~~~~il~~pi~~~------------~~~~igv~~~~nk~~g~~ 310 (707)
T KOG3689|consen 243 LLDYGLRGYVASTGEGLNISNAIADPRFDKQVDEDGTGIRPILCIPIKNK------------KGEVIGVQQLVNKEDGNP 310 (707)
T ss_pred hhhhhhhheeecccCcCCCCCccccccccccccccccccceeEEEecccc------------cCceecceeeeccccCCc
Confidence 12333445566677777777777776666544333344445677776443 122233344556666778
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 288 WRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~ 320 (634)
|+..+..+.+..+..++..+.++..+......+
T Consensus 311 f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s~ 343 (707)
T KOG3689|consen 311 FSRNDEDLFEAFTIFCGLSIHNTHMYSKINKSE 343 (707)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhHHHHhhhc
Confidence 999999999999999999999998887765544
No 144
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=43.85 E-value=2.3e+02 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.5
Q ss_pred hHHHHhHHhhhccc
Q 006701 66 GLTHFISLWTFTVH 79 (634)
Q Consensus 66 g~~~~~~~~~~~~~ 79 (634)
++--+.++.++|.|
T Consensus 90 ~lQ~~~G~~~f~~P 103 (144)
T cd08766 90 GLQWLFGFVTFWFP 103 (144)
T ss_pred HHHHHHHHHHHHcC
Confidence 33444444445554
No 145
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=43.49 E-value=1.1e+02 Score=22.60 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006701 47 AFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM 104 (634)
Q Consensus 47 ~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~~a~~ 104 (634)
++.....+...+|.+.+..|..++...+.-.....+ .....+.+++++..++.
T Consensus 17 p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~-----~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 17 PDASLAALAIILGIWLIISGIFQLISAFRRRKGSKG-----WWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHHHHH
Confidence 344566778889999999999999988883221111 12245555555555544
No 146
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=41.49 E-value=2.2e+02 Score=24.04 Aligned_cols=10 Identities=30% Similarity=0.550 Sum_probs=5.5
Q ss_pred HHHHHHhcCC
Q 006701 39 LIYFVQKSAF 48 (634)
Q Consensus 39 ~~~~~~~~~~ 48 (634)
++..++|++-
T Consensus 19 ii~~vr~~~l 28 (115)
T PF10066_consen 19 IIRLVRKRKL 28 (115)
T ss_pred HHHHHHHhhc
Confidence 4455666653
No 147
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=41.16 E-value=2.9e+02 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=23.7
Q ss_pred ccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 006701 271 KSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (634)
Q Consensus 271 ~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~ 311 (634)
|+..+|.+++... ...|+++|+-+.+-.|.-++.-+.+++
T Consensus 118 ~GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 118 GGERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp TTEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3334555555543 238999999888888888777775443
No 148
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=40.12 E-value=2.7e+02 Score=31.46 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=32.1
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHHhhHHHHhHHh
Q 006701 18 VRYQYISDILIALAYFSIPVELIYFVQ--KSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~ 74 (634)
..++.=++..-++|+..+|+.+++... ++++ .+.+++ .+....+-++||++...
T Consensus 69 ~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~--~r~~~~-lAl~~all~lsHll~~l 124 (616)
T PF10131_consen 69 RNIYWRGNIPETLAFALLPLVLLFLYRFIKKRK--YRYWIL-LALSMALLALSHLLSTL 124 (616)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCC--chhHHH-HHHHHHHHHHHhHHHHH
Confidence 445555788888899999998765543 2332 444443 33344445567855443
No 149
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=39.45 E-value=52 Score=21.86 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHhhHHHHhHHh
Q 006701 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (634)
Q Consensus 50 ~~~~~~~~~~~f~~~cg~~~~~~~~ 74 (634)
|+.....++++|.+++-+.|++...
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777889999999999987765
No 150
>PF15449 Retinal: Retinal protein
Probab=39.22 E-value=6.9e+02 Score=29.81 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006701 455 GDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 455 ~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
+-..+|.+++..|=.-|..+...+. .+ .-+.-+|.|+|-+.|-+..+
T Consensus 322 ~~de~llr~l~~le~~a~g~~~p~~---------~~--------------------~~L~SEDSGiGadneS~~~~ 368 (1287)
T PF15449_consen 322 GVDERLLRALGQLESLASGHGDPGV---------QD--------------------LPLCSEDSGIGADNESVQSV 368 (1287)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCC---------CC--------------------CccccccccCCccchhhhhh
Confidence 3456788888888777877776541 11 44556799999887765443
No 151
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.23 E-value=1.9e+02 Score=23.13 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006701 89 IAKMACAFVSCITALMLVH 107 (634)
Q Consensus 89 ~~~~~~a~vs~~~a~~l~~ 107 (634)
++.+++|+++++.+++.|+
T Consensus 6 iv~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777
No 152
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.16 E-value=1.4e+02 Score=22.09 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhc
Q 006701 127 DELDREMGLILT 138 (634)
Q Consensus 127 ~~l~~~~~~~~~ 138 (634)
.+++++.+.+++
T Consensus 51 ~~~~k~l~~le~ 62 (68)
T PF06305_consen 51 RRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 153
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.30 E-value=1.7e+02 Score=23.17 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhh
Q 006701 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT 75 (634)
Q Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~ 75 (634)
++.+..|-+-+++| ||++-.+|+.+.+++.++++.-..--+.++.
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~i~~l~ 48 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVPIRILF 48 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888776 6666677777776666555433333333333
No 154
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.71 E-value=3e+02 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhH
Q 006701 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFIS 72 (634)
Q Consensus 26 ~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~ 72 (634)
.+|+++.+.+-+.++.+.+.|.+-.||=+...++.++++-++.+.-.
T Consensus 21 ~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~ 67 (149)
T PF11694_consen 21 ILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSD 67 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777888888888888777777666655544433
No 155
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=36.05 E-value=2.7e+02 Score=23.67 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhccchh
Q 006701 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSK 81 (634)
Q Consensus 28 i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~ 81 (634)
.+-.|+++-+.+++..++-+. .+..+...+.++...|...++.++.-..|..
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~~ 101 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPSP 101 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 344567777777776665443 4456666778889999999999998876653
No 156
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=35.30 E-value=2e+02 Score=31.71 Aligned_cols=77 Identities=6% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHhhhHHHHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHHHHHHHHH
Q 006701 21 QYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCI 100 (634)
Q Consensus 21 ~~~s~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~ 100 (634)
...+-....+..+.+|+.++++..++|.+.-.|.+.+++.+ .++.++.+..+... | .+-..+.+++++.
T Consensus 177 ~~~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~~~g-p--------el~~i~g~l~~l~ 245 (522)
T PF02652_consen 177 SSMVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVANFLG-P--------ELPGILGGLVGLA 245 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHcc-c--------ccchHHHHHHHHH
Confidence 33344555677888999999999887775444443333222 33333333333222 1 2334555566666
Q ss_pred HHHHHHHH
Q 006701 101 TALMLVHI 108 (634)
Q Consensus 101 ~a~~l~~~ 108 (634)
..+.+.|.
T Consensus 246 ~~~~~~r~ 253 (522)
T PF02652_consen 246 VLVLFLRF 253 (522)
T ss_pred HHHHHHHH
Confidence 66555553
No 157
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=34.88 E-value=91 Score=29.65 Aligned_cols=15 Identities=7% Similarity=-0.030 Sum_probs=12.2
Q ss_pred CCCCCceEEecCchh
Q 006701 609 DLTGPKPLFRDNDQI 623 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~ 623 (634)
+..|++||||||=-.
T Consensus 115 ~i~gk~VLIVDDIvD 129 (211)
T PTZ00271 115 SVENRHILIVEDIVD 129 (211)
T ss_pred CCCCCEEEEEecccC
Confidence 468999999999653
No 158
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.66 E-value=4.3e+02 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=18.0
Q ss_pred hhHHHHHH-HHHHHHhhHHHHhHHhhhccc
Q 006701 51 YRWVLMQF-GSFIILCGLTHFISLWTFTVH 79 (634)
Q Consensus 51 ~~~~~~~~-~~f~~~cg~~~~~~~~~~~~~ 79 (634)
+...+.++ +.|++-=-.|-.+++.|+|+.
T Consensus 246 ~~k~fslwa~vF~l~Rl~tliiaVlt~gfg 275 (374)
T KOG1608|consen 246 YQKLFSLWAAVFVLGRLGTLIIAVLTVGFG 275 (374)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333 446666666777888888864
No 159
>PF14979 TMEM52: Transmembrane 52
Probab=33.29 E-value=40 Score=29.40 Aligned_cols=18 Identities=44% Similarity=1.228 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHhhHH
Q 006701 51 YRWVLMQFGSFIILCGLT 68 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~ 68 (634)
|-|++++.+...++||+|
T Consensus 21 yIwLill~~~llLLCG~t 38 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLT 38 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777777778888854
No 160
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.03 E-value=4.2e+02 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHhcCC
Q 006701 19 RYQYISDILIALAYFSIPVELIYFVQKSAF 48 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~i~~~~~~~~~~~~~ 48 (634)
|+..+-.+++.++.|++-..+.-++.....
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~~f~~~~~ 108 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMGFFSPKNS 108 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 555566667777788877777776666443
No 161
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=32.65 E-value=1e+02 Score=28.34 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.7
Q ss_pred CCCCCceEEecCch
Q 006701 609 DLTGPKPLFRDNDQ 622 (634)
Q Consensus 609 ~~~~~~vLvvDD~~ 622 (634)
+..|++||||||=-
T Consensus 89 ~v~gk~VLlVDDIi 102 (178)
T PRK15423 89 DIRGKDVLIVEDII 102 (178)
T ss_pred CCCCCEEEEEeeec
Confidence 46889999999964
No 162
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.21 E-value=4.4e+02 Score=24.92 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhchHH----HhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccC
Q 006701 123 KNRADELDREMGLILTQEE----TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 186 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~----~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 186 (634)
++...+++.+...+..+.+ ...-+..++..+....+++++++++-+..++-|+.+.+.|.+..+
T Consensus 51 R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~ 118 (218)
T COG3159 51 RNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQD 118 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEech
Confidence 4455555555544433332 234477888899999999999999999999999999998877654
No 163
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.13 E-value=5.5e+02 Score=26.01 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHH
Q 006701 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVD 397 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~ 397 (634)
+++++..++...+.+.+...++..=...+..|+..-++....+.+.-+.. .+-...+.++..+...++.+..-+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333333333344444555566666665555544444332 2222345677777778887777777
Q ss_pred HHHHHHH
Q 006701 398 DVLDLSR 404 (634)
Q Consensus 398 ~ll~~~~ 404 (634)
+++++..
T Consensus 219 nLLQle~ 225 (401)
T PF06785_consen 219 NLLQLES 225 (401)
T ss_pred HHHHhhh
Confidence 7777654
No 164
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=31.69 E-value=1.8e+02 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006701 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIE 383 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~ 383 (634)
..++-..++..+|+......++++.+.+-...++..+.+.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 4578888999999977888888888777666555554443
No 165
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=31.49 E-value=1.4e+02 Score=27.97 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=50.1
Q ss_pred CChhhHHHhccCCeEEcCCCCch-hhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCcc
Q 006701 210 NLPIVTDVFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (634)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (634)
..+.+..++++.+.+.+.+..-. .+.+|. ..-......++.|+.. -|++++..+.+|.|
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~--~lP~ntq~VlvqP~g~------------------~G~lvlgs~~~R~f 179 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD--YLPENTQSVLVQPLGQ------------------NGVLVLGSNSPRAF 179 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh--hcCCCCcEEEEEEcCC------------------CeEEEEeeCCcccc
Confidence 45678899999988877765432 222222 2223445566667632 26778888899999
Q ss_pred chhhhHHHHHHHHH
Q 006701 289 RDHELELIDVVADQ 302 (634)
Q Consensus 289 ~~~e~~ll~~~a~~ 302 (634)
+..|..++..+|+.
T Consensus 180 t~~D~~Wi~~iA~K 193 (195)
T PF11152_consen 180 TKSDEAWIAGIADK 193 (195)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998875
No 166
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.13 E-value=3e+02 Score=24.96 Aligned_cols=45 Identities=31% Similarity=0.515 Sum_probs=31.7
Q ss_pred hHHHHHHHhhHHHHHHHHHH---hcCCCChhHHHHHHHHHHHHhhHHH
Q 006701 25 DILIALAYFSIPVELIYFVQ---KSAFFPYRWVLMQFGSFIILCGLTH 69 (634)
Q Consensus 25 ~~~i~~a~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~cg~~~ 69 (634)
|..++....++|+.+++... |++-+|.+.++.++.+|+++.-..|
T Consensus 2 ~~~~~~~~l~~~~~~~~aa~sDi~s~~IpN~lv~~ll~~~~i~a~~~~ 49 (168)
T COG4960 2 DMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAG 49 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHcC
Confidence 55667777888887777654 3456799999888888777544443
No 167
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=31.04 E-value=2.1e+02 Score=31.31 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 006701 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFG 59 (634)
Q Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 59 (634)
-+++|.||.+..+|....- +.|+|+.=+|-
T Consensus 158 ~l~~~~ip~~~gff~l~~~-i~~~~~~~i~n 187 (952)
T TIGR02921 158 LLAFFAIPAAAGFFELLEE-IEFEHLGDIFN 187 (952)
T ss_pred HHHHHhhhHHhHHHHHHHH-HHHHhHHHHHH
Confidence 3578999999988866543 35666655554
No 168
>PRK13661 hypothetical protein; Provisional
Probab=30.50 E-value=2.8e+02 Score=25.63 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhHH------HHhHHhhhccchhhHHHHHHHHHHHHHHH
Q 006701 53 WVLMQFGSFIILCGLT------HFISLWTFTVHSKAVAVVMTIAKMACAFV 97 (634)
Q Consensus 53 ~~~~~~~~f~~~cg~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~v 97 (634)
.-++.|..+.++|+.- -+.+++.|..|..-+ ...++++.++-.+
T Consensus 107 k~~~~f~i~~~i~n~i~~g~i~~~~di~~y~~p~~~v-~~q~~~~~~~n~~ 156 (182)
T PRK13661 107 KDIVYFNIVQIIANVIAWGLIAPIGDIIIYSEPANKV-FAQGIVAAIANII 156 (182)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHhHHHHHHHHHH
Confidence 4444566666666554 344444454443322 2445555554443
No 169
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.45 E-value=2.3e+02 Score=21.01 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHhhHHHHhHHhhhc
Q 006701 50 PYRWVLMQFGSFIILCGLTHFISLWTFT 77 (634)
Q Consensus 50 ~~~~~~~~~~~f~~~cg~~~~~~~~~~~ 77 (634)
++|.++-.++.||-+.|+--.+....+-
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD 32 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFD 32 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4788999999999999977766666665
No 170
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=30.37 E-value=4.3e+02 Score=24.24 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHhcCCCC---hhHHHHHHHHHHHHhhHHHHhHHhhh
Q 006701 41 YFVQKSAFFP---YRWVLMQFGSFIILCGLTHFISLWTF 76 (634)
Q Consensus 41 ~~~~~~~~~~---~~~~~~~~~~f~~~cg~~~~~~~~~~ 76 (634)
++..+.-.+| .+.+=+.-+.|.++||..++....++
T Consensus 103 ~ll~~~~~L~~~~W~~lt~~W~~fF~~~a~lN~~va~~~ 141 (176)
T PF04279_consen 103 RLLGKQLPLPDRGWRRLTLRWALFFLFLAALNEYVAYNF 141 (176)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333333455 56677778899999999998876543
No 171
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=29.88 E-value=1.4e+02 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCCCCceEEecCch
Q 006701 609 DLTGPKPLFRDNDQ 622 (634)
Q Consensus 609 ~~~~~~vLvvDD~~ 622 (634)
+..|++||||||--
T Consensus 94 ~v~gk~VLIVDDIi 107 (181)
T PRK09162 94 SLKGRTVLVVDDIL 107 (181)
T ss_pred CCCCCEEEEEcccc
Confidence 35789999999964
No 172
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=28.56 E-value=7.7e+02 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCCchh-hHHHHHHhhhHHHHHHHhhHHHHHHHHHH
Q 006701 9 TQWPPDE-LLVRYQYISDILIALAYFSIPVELIYFVQ 44 (634)
Q Consensus 9 ~~~~~~~-~~~~~~~~s~~~i~~a~~~i~~~~~~~~~ 44 (634)
..|.++. +...|.++-=....++++.+|++..|.=.
T Consensus 69 ~~~~~~~~~~~~W~~iyw~~~il~w~ilPf~~~y~es 105 (471)
T PF04791_consen 69 GQWLNTSLMEVLWYIIYWLTFILTWLILPFAQFYYES 105 (471)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566654 33357677666667789999999888644
No 173
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.19 E-value=4.8e+02 Score=24.11 Aligned_cols=12 Identities=0% Similarity=-0.033 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHH
Q 006701 81 KAVAVVMTIAKM 92 (634)
Q Consensus 81 ~~~~~~~~~~~~ 92 (634)
||.-|+-.++..
T Consensus 87 yPFi~LnLllS~ 98 (191)
T COG4420 87 YPFILLNLLLST 98 (191)
T ss_pred ccHHHHHHHHHH
Confidence 566554444333
No 174
>COG3768 Predicted membrane protein [Function unknown]
Probab=27.97 E-value=6.4e+02 Score=25.44 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=25.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHH
Q 006701 76 FTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLK 123 (634)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~a~vs~~~a~~l~~~~p~~l~~~s~~~~~~ 123 (634)
.|.-..|++| .+-.+++++.++.+..+.+..-.+..++.++.+..
T Consensus 90 ~~qr~dWl~~---~a~~v~~l~vlagv~~v~rEw~rl~rL~~r~~lr~ 134 (350)
T COG3768 90 LFQRADWLGL---GAAAVGALIVLAGVGSVVREWRRLVRLRQRQHLRD 134 (350)
T ss_pred HHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444443 33445555555555666666666667766666543
No 175
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=27.74 E-value=1.1e+02 Score=31.30 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=15.7
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHhc
Q 006701 23 ISDILIALAYFSIPVELIYFVQKS 46 (634)
Q Consensus 23 ~s~~~i~~a~~~i~~~~~~~~~~~ 46 (634)
++|.++++.-..+...++..+++.
T Consensus 25 vgdi~~~~~il~ll~~~~~~~~~~ 48 (318)
T PF12725_consen 25 VGDILYYLLILFLLYYLIRLIRKI 48 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666666666543
No 176
>MTH00145 CYTB cytochrome b; Provisional
Probab=27.51 E-value=3.7e+02 Score=28.17 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHH-hcCCCChhHHHHHH----HHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHH
Q 006701 18 VRYQYISDILIALAYFSIPVELIYFVQ-KSAFFPYRWVLMQF----GSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKM 92 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~i~~~~~~~~~-~~~~~~~~~~~~~~----~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (634)
...|++|-.+.+..|-.-+-.-..-+. =-+|+++.|.+-.. +.+.++|-.-|+.-.+.+...-.+..|.+|++-.
T Consensus 42 ~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~ 121 (379)
T MTH00145 42 LGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLL 121 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHHH
Confidence 355777877777766543321111121 23588988887643 6788899999999887764333456788888777
Q ss_pred HHHHHHHHHHHHH
Q 006701 93 ACAFVSCITALML 105 (634)
Q Consensus 93 ~~a~vs~~~a~~l 105 (634)
+..+....+.+.|
T Consensus 122 ~l~~~~af~GYvL 134 (379)
T MTH00145 122 LLSMGTAFLGYVL 134 (379)
T ss_pred HHHHHHHHHhhcc
Confidence 7666666666544
No 177
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.47 E-value=55 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.682 Sum_probs=13.2
Q ss_pred EEEEEEcCCCCCCCCh
Q 006701 512 RVQVNDSGCGVPPQDI 527 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~ 527 (634)
.+.|.|+|+||..+++
T Consensus 143 lLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDL 158 (785)
T ss_pred eeeEecccCCccHHHH
Confidence 4788999999987654
No 178
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=27.12 E-value=3.3e+02 Score=30.72 Aligned_cols=89 Identities=12% Similarity=-0.025 Sum_probs=54.8
Q ss_pred HhhhHHHHHHHhhHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHhhHHHHhHHhh------hccc---hhhHHHHHHHHH
Q 006701 22 YISDILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWT------FTVH---SKAVAVVMTIAK 91 (634)
Q Consensus 22 ~~s~~~i~~a~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~cg~~~~~~~~~------~~~~---~~~~~~~~~~~~ 91 (634)
+.+-..+++-|...|-.|+.+++..+. -+-++-..+++.-+.+||.-....... +|+. .+.- ..+
T Consensus 123 lg~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~mGaVNA~atlaa~l~~~l~ll~~~~~rr-----~~r 197 (680)
T PF11847_consen 123 LGAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALMGAVNAVATLAALLPAGLWLLFRRPGRR-----WWR 197 (680)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhheeeecCCcc-----chh
Confidence 345556677888999999999998753 344445555787788888765443222 1221 1111 224
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 006701 92 MACAFVSCITALMLVHIIPDLLSV 115 (634)
Q Consensus 92 ~~~a~vs~~~a~~l~~~~p~~l~~ 115 (634)
+....+.++.++.+|.++|.++.-
T Consensus 198 ~~awW~~~~~las~WWivPLl~lg 221 (680)
T PF11847_consen 198 LRAWWLLGVVLASAWWIVPLLLLG 221 (680)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455666677788888877654
No 179
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.09 E-value=5.1e+02 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=15.9
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHhcCC
Q 006701 19 RYQYISDILIALAYFSIPVELIYFVQKSAF 48 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~i~~~~~~~~~~~~~ 48 (634)
++++++.+++.+..|.+-++-+= +.|-+|
T Consensus 4 i~eiI~~vLLliG~~f~ligaIG-LlRfPD 32 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIG-VIRLPD 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 34677777776665555444333 334455
No 180
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.42 E-value=5.5e+02 Score=24.19 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhHH
Q 006701 55 LMQFGSFIILCGLT 68 (634)
Q Consensus 55 ~~~~~~f~~~cg~~ 68 (634)
|..++.|.+.|-..
T Consensus 18 ~~~~~~~~~~~~~~ 31 (205)
T PRK06231 18 FLIISLFLVSCTEN 31 (205)
T ss_pred HHHHHHHHHHccCC
Confidence 34455555666544
No 181
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=26.19 E-value=4.8e+02 Score=23.38 Aligned_cols=12 Identities=0% Similarity=0.152 Sum_probs=5.5
Q ss_pred HHHhHHhhhccc
Q 006701 68 THFISLWTFTVH 79 (634)
Q Consensus 68 ~~~~~~~~~~~~ 79 (634)
--+.++.+++.|
T Consensus 99 Q~~~Gf~~f~~P 110 (153)
T cd08765 99 QLVLGISVYLLP 110 (153)
T ss_pred HHHHHHHHHHcc
Confidence 344444444444
No 182
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=26.18 E-value=4.3e+02 Score=24.76 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhh
Q 006701 38 ELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT 75 (634)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~ 75 (634)
+.+||..||..=..+-+++.++.|++-..++-++..|.
T Consensus 127 ~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 127 ACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688888766577888888888888666666666554
No 183
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.64 E-value=1.6e+02 Score=27.93 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=3.5
Q ss_pred hHHHHhHH
Q 006701 66 GLTHFISL 73 (634)
Q Consensus 66 g~~~~~~~ 73 (634)
++.|++.+
T Consensus 173 d~m~fl~v 180 (230)
T PF03904_consen 173 DFMDFLHV 180 (230)
T ss_pred cchhhhhH
Confidence 33444443
No 184
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=81 Score=31.03 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006701 314 EDSMRARNQLMEQNVALDSA 333 (634)
Q Consensus 314 ~~~~~~~~~l~~~~~~l~~~ 333 (634)
.++++.+++|+++.++|++.
T Consensus 67 ~eL~~rqeEL~Rke~ELdRR 86 (313)
T KOG3088|consen 67 AELLKKQEELRRKEQELDRR 86 (313)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444433
No 185
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=25.08 E-value=2.8e+02 Score=29.71 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=29.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhccc
Q 006701 41 YFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVH 79 (634)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~ 79 (634)
+++.+++| |+++-+++...|-++|+.-..+.+..-|.+
T Consensus 185 ~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs~ 222 (512)
T KOG2493|consen 185 HSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVYDGSK 222 (512)
T ss_pred HHHHHhcC-chhhchhhcchhhhhhhhheeeeEEecCcc
Confidence 44556788 999999999999999998777776655544
No 186
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.06 E-value=4e+02 Score=22.09 Aligned_cols=15 Identities=0% Similarity=0.076 Sum_probs=6.2
Q ss_pred HHHHHHhhhhchHHH
Q 006701 128 ELDREMGLILTQEET 142 (634)
Q Consensus 128 ~l~~~~~~~~~~~~~ 142 (634)
+++++.+.++.+++.
T Consensus 38 ~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 38 AQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 187
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.99 E-value=4.2e+02 Score=22.28 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.8
Q ss_pred HHHHHHHhhhh
Q 006701 127 DELDREMGLIL 137 (634)
Q Consensus 127 ~~l~~~~~~~~ 137 (634)
+++++..+.++
T Consensus 109 ~~l~~d~~~lk 119 (121)
T PF07332_consen 109 AELKEDIAALK 119 (121)
T ss_pred HHHHHHHHHhh
Confidence 44444444433
No 188
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=24.91 E-value=8.4e+02 Score=25.80 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=21.6
Q ss_pred HHhHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 69 HFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (634)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~~a~~l~~ 107 (634)
=++++++++. .+....+.+..+.|++.+.+.+.++.
T Consensus 364 i~LGi~tv~~---~lP~~la~~H~~gA~lLl~~~~~l~~ 399 (403)
T PTZ00127 364 VLLGITTLLS---QVPVHLAVAHQFGALVLLTTLLRLCH 399 (403)
T ss_pred HHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666653 22234467788888777766665554
No 189
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=24.82 E-value=4e+02 Score=23.94 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=31.7
Q ss_pred HhhhHHH---HHHHhhHHHHHHHH---HHhcCCC--ChhHHHHHHHHHHHHhhHHHHhHH
Q 006701 22 YISDILI---ALAYFSIPVELIYF---VQKSAFF--PYRWVLMQFGSFIILCGLTHFISL 73 (634)
Q Consensus 22 ~~s~~~i---~~a~~~i~~~~~~~---~~~~~~~--~~~~~~~~~~~f~~~cg~~~~~~~ 73 (634)
++||.++ +++-|.+|+.+++. ..++++. +.++.+..+..++.+|+.-|+..-
T Consensus 53 ~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~ 112 (171)
T PF13491_consen 53 YLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSLLIP 112 (171)
T ss_pred HHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566665 45567788777764 2334433 355556666667778888876543
No 190
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=24.76 E-value=85 Score=19.29 Aligned_cols=16 Identities=6% Similarity=0.355 Sum_probs=8.4
Q ss_pred HhhHHHHH--HHHHHhcC
Q 006701 32 YFSIPVEL--IYFVQKSA 47 (634)
Q Consensus 32 ~~~i~~~~--~~~~~~~~ 47 (634)
.|++++.. +++++|++
T Consensus 12 ly~~l~~~s~~~Li~k~~ 29 (29)
T TIGR03063 12 LYAVLFLGSGLFLIRKRK 29 (29)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 34444443 66676654
No 191
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=24.64 E-value=5.9e+02 Score=23.92 Aligned_cols=89 Identities=11% Similarity=0.187 Sum_probs=57.1
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHH--hcCCCChhHHHHH----HHHHHHHhhHHHHhHHhhhccc--hhhHHHHHHH
Q 006701 18 VRYQYISDILIALAYFSIPVELIYFVQ--KSAFFPYRWVLMQ----FGSFIILCGLTHFISLWTFTVH--SKAVAVVMTI 89 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~i~~~~~~~~~--~~~~~~~~~~~~~----~~~f~~~cg~~~~~~~~~~~~~--~~~~~~~~~~ 89 (634)
...|++|-.+.|+-|..-+. ..|-.. =-+|+|+.|.+-. .+.+.++|-.-|++-.+.+... .....|..|+
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~-~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~ 111 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVT-LAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGV 111 (200)
T ss_pred HHHHHHHHHHHHHHHcCChH-HHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 35567777777666654432 122211 1357888887753 3678888999999988776321 2456788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006701 90 AKMACAFVSCITALMLVH 107 (634)
Q Consensus 90 ~~~~~a~vs~~~a~~l~~ 107 (634)
+-.+..++...+.+.|..
T Consensus 112 ~l~~l~~~~af~GY~Lpw 129 (200)
T cd00284 112 ILLLLTMATAFMGYVLPW 129 (200)
T ss_pred HHHHHHHHHHHcccccCc
Confidence 888777777667665544
No 192
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.14 E-value=7e+02 Score=24.61 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhchHHHhHHHH
Q 006701 124 NRADELDREMGLILTQEETGRHVR 147 (634)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~l~ 147 (634)
+..++|+++..+++.+...++.+.
T Consensus 76 ~en~~L~~e~~~l~~~~~~~~~l~ 99 (276)
T PRK13922 76 EENEELKKELLELESRLQELEQLE 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444333
No 193
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=24.08 E-value=3.8e+02 Score=25.61 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=35.9
Q ss_pred CCCCCchhhHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Q 006701 8 DTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSA-FFPYRWVLMQFGSFI 62 (634)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~i~~a~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~f~ 62 (634)
++.|+.+- +.--|+.|..+..-+.|.|.+.+++++.++| .+-+.++...+.=|+
T Consensus 47 ~~~~~~~y-~~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl~~Qi~D~~ 101 (258)
T TIGR00799 47 CPAVNMQY-LRIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFLSLQIMDFL 101 (258)
T ss_pred CCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHHHHHHHHHH
Confidence 45554322 3455888888888888999999999987765 344444555555444
No 194
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.60 E-value=55 Score=20.12 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.6
Q ss_pred EEEEEEEcCCC
Q 006701 511 LRVQVNDSGCG 521 (634)
Q Consensus 511 l~i~V~D~G~G 521 (634)
..|+|.|+||-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999974
No 195
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=23.28 E-value=1.3e+02 Score=20.29 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=14.4
Q ss_pred HHHHhhHHHHHHHHHHh
Q 006701 29 ALAYFSIPVELIYFVQK 45 (634)
Q Consensus 29 ~~a~~~i~~~~~~~~~~ 45 (634)
.+.||.|-++|+|+..-
T Consensus 14 T~fYf~Ill~L~ylYgy 30 (42)
T PF12459_consen 14 TLFYFAILLALIYLYGY 30 (42)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67899999999998653
No 196
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=22.74 E-value=99 Score=29.32 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=35.1
Q ss_pred eEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCC
Q 006701 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (634)
Q Consensus 452 ~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~ 524 (634)
+..+||.+-+-+-.+.+.|+.++.+-...---....++ -+++|.-+|.|||.
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG---------------------k~iSvmg~GmGipS 69 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG---------------------KKISVMGHGMGIPS 69 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC---------------------cEEEEEEecCCCcc
Confidence 34579999999999999999998853211111111111 47888899999875
No 197
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=22.73 E-value=6.4e+02 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHhhhhchHHH
Q 006701 91 KMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEET 142 (634)
Q Consensus 91 ~~~~a~vs~~~a~~l~~~~p~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (634)
++-++.+.+...+.-|...|.. +...-+.+-+++|+++..+++.+..+
T Consensus 35 ~~r~~~~d~~ap~~~~~~~p~~----~~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 35 KIQDTFVSLCSKFFPKFRQGPS----SHALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHhhHHHhchhhHHHhCcch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333 11222334455566665555544444
No 198
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=22.73 E-value=2e+02 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=39.0
Q ss_pred ceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCC
Q 006701 451 TYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (634)
Q Consensus 451 ~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~ 524 (634)
.++.|||.+..+|-. +++|+.+-+....-.......++ -.++|.-+|+|-|.
T Consensus 20 vilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g---------------------~~v~v~StGIGgPS 71 (248)
T COG2820 20 VILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG---------------------KPVTVCSTGIGGPS 71 (248)
T ss_pred EEecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC---------------------eEEEEEecCCCCch
Confidence 356799999999887 99999888776554444444433 46889999999775
No 199
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=22.56 E-value=2e+02 Score=27.81 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhccch
Q 006701 33 FSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHS 80 (634)
Q Consensus 33 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~ 80 (634)
|+=|+++..+.-.++ |++.++.++++|.=+.-+=..-.+|..++|-
T Consensus 13 fgP~lalf~~tIa~~--p~liIi~i~~aFfWLvSLLlss~iW~i~~pl 58 (238)
T PF06105_consen 13 FGPALALFVFTIARD--PQLIIILIAGAFFWLVSLLLSSLIWFIVVPL 58 (238)
T ss_pred HCHHHHhhheeeeCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455556666555555 8999999999999888877777788877764
No 200
>PLN02680 carbon-monoxide oxygenase
Probab=22.43 E-value=7.1e+02 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=7.8
Q ss_pred hhHHHHhHHhhhccc
Q 006701 65 CGLTHFISLWTFTVH 79 (634)
Q Consensus 65 cg~~~~~~~~~~~~~ 79 (634)
.++--+.++.+||.|
T Consensus 128 ~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 128 FSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHcc
Confidence 334445555555555
No 201
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=22.38 E-value=5.1e+02 Score=23.52 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.6
Q ss_pred HHHHhh
Q 006701 19 RYQYIS 24 (634)
Q Consensus 19 ~~~~~s 24 (634)
.||.++
T Consensus 55 ~Wq~~s 60 (179)
T PF14936_consen 55 LWQFLS 60 (179)
T ss_pred HHHHHH
Confidence 444443
No 202
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=22.08 E-value=7.4e+02 Score=25.84 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhhHHHHhHHhhhccchhhHH-HHHHH
Q 006701 28 IALAYFSIPVELIYFVQKSAFF-PYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVA-VVMTI 89 (634)
Q Consensus 28 i~~a~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~~~~-~~~~~ 89 (634)
-..+|..|-+.++..+.++=.+ ++|++= ...+.+.+-|+-|...+.-+-+.+++.+ |+.+.
T Consensus 131 ~~~~yi~~~lllV~~l~~~i~Ye~WR~~H-~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~ 193 (438)
T COG4097 131 EWSAYIFIGLLLVWRLWLNIGYENWRIAH-RLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIA 193 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHH
Confidence 3456767766666645554333 455554 5677777888889887766433333433 44433
No 203
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=22.03 E-value=49 Score=30.88 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.0
Q ss_pred CCCCceEEecCchhhhhhhhh
Q 006701 610 LTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 610 ~~~~~vLvvDD~~~~r~v~~~ 630 (634)
+.|++||||||=...+.=+++
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~ 105 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLEL 105 (192)
T ss_pred cCCCeEEEEecccCchHhHHH
Confidence 689999999998877765544
No 204
>MTH00100 CYTB cytochrome b; Provisional
Probab=21.94 E-value=7e+02 Score=26.17 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=57.7
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHh-cCCCChhHHHHHH----HHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHH
Q 006701 19 RYQYISDILIALAYFSIPVELIYFVQK-SAFFPYRWVLMQF----GSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMA 93 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~----~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (634)
..|++|-.+.+..|-.-+-.-..-+.. -+|+++.|.+-.. +.+.++|-.-|++-.+.+...-.+..|..|++-.+
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~~~~~W~~G~~l~~ 121 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHH
Confidence 457778777776666544222222222 3688988877543 66778888889988866543223456888888887
Q ss_pred HHHHHHHHHHHHHH
Q 006701 94 CAFVSCITALMLVH 107 (634)
Q Consensus 94 ~a~vs~~~a~~l~~ 107 (634)
..+....+.+.|..
T Consensus 122 l~~~~af~Gy~Lpw 135 (379)
T MTH00100 122 TVMATAFMGYVLPW 135 (379)
T ss_pred HHHHHHHHHhccCh
Confidence 77777777666543
No 205
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=21.78 E-value=1.9e+02 Score=28.16 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=12.1
Q ss_pred CCCCCceEEecCchh
Q 006701 609 DLTGPKPLFRDNDQI 623 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~ 623 (634)
+..|++||||||--.
T Consensus 147 ~l~gk~VLIVDDIid 161 (241)
T PTZ00149 147 CLKDKHVLIVEDIID 161 (241)
T ss_pred ccCCCEEEEEEeEeC
Confidence 468899999999643
No 206
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=64 Score=35.27 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.5
Q ss_pred EEEEEEEcCCCCCCCCh
Q 006701 511 LRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~ 527 (634)
-.++|.|+|+||..+++
T Consensus 102 ~tlti~DtGIGMTk~dL 118 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDL 118 (656)
T ss_pred ceEEEEecCCCcCHHHH
Confidence 57899999999998765
No 207
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.45 E-value=2.3e+02 Score=25.48 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=13.1
Q ss_pred HHhhhHHHHHHHhhHHHHHHHHHH
Q 006701 21 QYISDILIALAYFSIPVELIYFVQ 44 (634)
Q Consensus 21 ~~~s~~~i~~a~~~i~~~~~~~~~ 44 (634)
|...|.=+++.|.++-++.+-|..
T Consensus 23 ~~l~d~kL~lg~~a~~iA~~a~~~ 46 (162)
T PF06703_consen 23 HTLTDIKLALGYLAVIIAGFAFFY 46 (162)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHh
Confidence 444555556666665555555544
No 208
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.36 E-value=3.4e+02 Score=29.29 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.9
Q ss_pred HHHHHHhhc
Q 006701 466 NIVGNAVKF 474 (634)
Q Consensus 466 nLl~NAik~ 474 (634)
+.++++++.
T Consensus 450 e~~t~~l~~ 458 (505)
T PF06638_consen 450 EPVTSGLRD 458 (505)
T ss_pred hhhhhcccC
Confidence 355666653
No 209
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.20 E-value=3.4e+02 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.507 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHhhHHHHhHHhhhc
Q 006701 32 YFSIPVELIYFVQKSAF---FPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (634)
Q Consensus 32 ~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~cg~~~~~~~~~~~ 77 (634)
||++|+.++-...-.+- -+++|+++ ...|+...-.-|++..---.
T Consensus 230 ylTlPvLf~MiSnHyp~~y~~~~nWlil-~li~~~g~~IRhfFn~rH~~ 277 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTYGHPYNWLIL-ALIMLAGALIRHFFNLRHAG 277 (300)
T ss_pred eeHHHHHHHHHhccCccccccchhHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 99999877764322221 15888765 44444555566888776543
No 210
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.14 E-value=5.9e+02 Score=25.46 Aligned_cols=13 Identities=23% Similarity=-0.043 Sum_probs=7.7
Q ss_pred CceEEecCchhhh
Q 006701 613 PKPLFRDNDQIAS 625 (634)
Q Consensus 613 ~~vLvvDD~~~~r 625 (634)
..|+|++.+--|.
T Consensus 266 ~~V~Vi~~~~~~~ 278 (283)
T TIGR00219 266 RYVLLVWNDVPNK 278 (283)
T ss_pred eEEEEEeCCCCCC
Confidence 3677776654443
No 211
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=21.03 E-value=2.7e+02 Score=21.74 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 006701 343 ARNDFRAVMNHEMRTLMH 360 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~ 360 (634)
...+|...|.+|++||..
T Consensus 29 ~~~~F~~AL~DDLNTp~A 46 (81)
T cd07955 29 LVARLREALADDLDTPKA 46 (81)
T ss_pred HHHHHHHHHHhhCChHHH
Confidence 457899999999999953
No 212
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.97 E-value=4.9e+02 Score=21.64 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHhHH-hhhccchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 006701 51 YRWVLMQFGSFIILCGLTHFISL-WTFTVHSK----AVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKT 117 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~a~vs~~~a~~l~~~~p~~l~~~s 117 (634)
|-|++.-+.|.|...|+...... +++|...| +.+.-..++-.+.++++++..+.....+-....-++
T Consensus 8 ~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~ 79 (117)
T COG3462 8 FAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555555554444333222 23443323 111111245555666666666555555555555444
No 213
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=20.94 E-value=7.5e+02 Score=25.03 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhc
Q 006701 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTL 174 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l 174 (634)
+++..+.+.++....+.+-++.+..+..+-+
T Consensus 140 ~aLdlivr~l~aG~~l~dAl~~~~~e~~~Pl 170 (309)
T COG4965 140 EALDLIVRALRAGAPLPDALRLAAKETPEPL 170 (309)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhCCCch
Confidence 4577777888888777777777666654443
No 214
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=1.8e+02 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006701 315 DSMRARNQLMEQNVALDSARREAEKAIHARND 346 (634)
Q Consensus 315 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 346 (634)
+..+.+++|.++++||++..+++++.+++...
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 45567788888888888888888776655444
No 215
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.45 E-value=4.5e+02 Score=26.62 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006701 310 AAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEM 355 (634)
Q Consensus 310 a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~isHel 355 (634)
..+...+.....++++++.+++...+++++.....++|...+.-++
T Consensus 31 ~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 31 PNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556677888888888888888888888888888776553
No 216
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=20.14 E-value=4.3e+02 Score=28.75 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHH-
Q 006701 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM- 104 (634)
Q Consensus 26 ~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vs~~~a~~- 104 (634)
...++..+.||+.++++.-+.|+..=.|-+.+++. +.|..++++..+...+ ..| ..+.+++|......
T Consensus 184 ~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag--~sfti~q~l~a~~lGP-elP--------dIig~lvsl~i~~~f 252 (522)
T COG1620 184 RQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAG--LSFTIPQFLLANFLGP-ELP--------DIIGGLVSLGILALF 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHhccc-ccH--------HHHHHHHHHHHHHHH
Confidence 44578899999999999998887655555555554 3567788888777632 112 44556666655543
Q ss_pred HHHHhhh
Q 006701 105 LVHIIPD 111 (634)
Q Consensus 105 l~~~~p~ 111 (634)
+.+..|+
T Consensus 253 lk~~~PK 259 (522)
T COG1620 253 LKKWQPK 259 (522)
T ss_pred HHhhCCc
Confidence 4445555
Done!