BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006702
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 17/201 (8%)
Query: 40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII-------E 92
D+ A YG E+ + LVE G V +PD L WAA+NNR +Y I +
Sbjct: 12 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 93 HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF 152
GGD+N+ T LHW+ +G + + L++ GA + D G H+AAQ+G T+
Sbjct: 71 LGGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLFLDAYRGRQDK-EGCTPLHW 210
+ ++++K D D+ D +G +PL WAAY+ + D RLLL + DK T LHW
Sbjct: 125 VAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 211 AAIRGNLEACTVLVQAGKKED 231
A + GN ++L++AG D
Sbjct: 184 AVLAGNTTVISLLLEAGANVD 204
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 35/162 (21%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
++E G DV D T LHW+A+ I + + + +GA
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA--------------------- 66
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
IV + D + +PLHWA +G + L+ A D EGC+ +H
Sbjct: 67 ------IVDQLGGDLN------STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH 114
Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
AA G+ L+ G+ D+M D G+TP A+ + H
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYRTH 154
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTA-AAQYIIEHGGDVNA 99
++ AA +G + L+ +G V D G L WAA + + ++ VN
Sbjct: 113 IHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 100 AD-HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHI 156
D + TALHW+ + G V LLL GA V+A ++ G +A Q + H+
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA N + +IE+G DVNA+D G+T LH++A G ++ +LL+ +GA VNA D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H AA+ G + ++SK AD + D+DGR+PLH+AA +G + ++LL+ A
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D +G TPL A GN E +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA G+ ++++ L+E G V+ D G L +AA + +I G DVNA D
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G+T LH++A G ++ +LL+ +GA VNA D G H AA+ G + ++SK AD
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK-GAD 128
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ D+DGR+PL A G + ++LL
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+DGR+PLH+AA +G + ++LL+ A +D +G TPLH+AA G+ E
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 275
+L+ G D+ D+ G TP A+ + H++ V + + DG +P+
Sbjct: 88 LLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G E ++ L+ +G V+ D G L +AA + +I G DV
Sbjct: 71 RTPLHYAAKEGHKEIVKLLIS-KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
N +D G+T L + G ++ +LL ++G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA N + ++E+G D NA+D G+T LH++A G ++ +LLL +GA NA D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H AA+ G + ++SK ADP+ D+DGR+PLH+AA G + ++LLL A
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D +G TPL A GN E +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA G+ ++++ L+E G + D G L +AA N + ++ G D NA D
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G+T LH++A G ++ +LLL +GA NA D G H AA+ G + ++SK AD
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-GAD 128
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
P+ D+DGR+PL A G + ++LL
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
ADP+ D+DGR+PLH+AA G + ++LLL A +D +G TPLH+AA G+ E
Sbjct: 28 ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS 273
+L+ G D D+ G TP A++ H+++ + LL K D N+
Sbjct: 88 LLLSKGA--DPNAKDSDGRTPLHYAAENGHKEI------VKLLLSKGADPNT 131
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G E + +L+ +G + D G L +AA N + ++ G D
Sbjct: 71 RTPLHYAAENGHKE-IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
N +D G+T L + G ++ +LL ++G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA N + ++E+G DVNA+D G+T LH +A G +V +LLL +GA NA D G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA+ G + ++S+ ADP+ D+DG++PLH AA G + ++LLL A
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D +G TPL A GN E +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA G+ ++++ L+E G V+ D G L AA N + ++ G D NA D
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G+T LH +A G +V +LLL +GA NA D G H+AA+ G + ++S+ AD
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ-GAD 128
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
P+ D+DGR+PL A G + ++LL
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 123 LLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG 182
LL GA VNA+D G H+AA+ G + ++S+ ADP+ D+DG++PLH AA G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENG 81
Query: 183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP 242
+ ++LLL A +D +G TPLH AA G+ E +L+ G D +D+ G TP
Sbjct: 82 HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTSDSDGRTP 139
Query: 243 AQLASDKNHRQVAFFL 258
LA + + +V L
Sbjct: 140 LDLAREHGNEEVVKLL 155
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
+ ++ AA G E ++ L+ +G + D G L AA N + ++ G D
Sbjct: 71 KTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
N +D G+T L + G +V +LL ++G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA N + +IE+G DVNA+D G+T LH +A G +V +LL+ +GA VNA D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H AA+ G + ++SK AD + D+DGR+PLH AA G + ++LL+ A
Sbjct: 71 RTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D +G TPL A GN E +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA G+ ++++ L+E G V+ D G L AA N + +I G DVNA D
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G+T LH +A G +V +LL+ +GA VNA D G H AA+ G + ++SK AD
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GAD 128
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ D+DGR+PL A G + ++LL
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+DGR+PLH AA G + ++LL+ A +D +G TPLH AA G+ E
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARRLLDKRCDGNSPI 275
+L+ G D+ D+ G TP A++ H++V + + DG +P+
Sbjct: 88 LLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G E ++ L+ +G V+ D G L AA N + +I G DV
Sbjct: 71 RTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
N +D G+T L + G +V +LL ++G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L AA + + +I +G DVNA D+TG T LH +AV G +++ E+LL+ GA V+AAD
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD 194
+YG+ H+AA G + ++ K+ AD + D G +PLH AA +G + + +LL
Sbjct: 78 VYGFTPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 195 AYRGRQDKEGCTPLHWAAIRGN 216
A QDK G T + GN
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA++ + +++HG DV+AAD G T LH +A+
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA DM G H+AA G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIR 188
+ G D +
Sbjct: 150 FDISIDNGNEDLAK 163
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA G + ++ K AD D D G +PLH AA
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVA 255
++ D + +A
Sbjct: 149 AFDISIDNGNEDLA 162
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V D G+ L AA+ + ++++G DVNA
Sbjct: 51 LHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
D TG T LH +A G +++ E+LL+ GA VNA D +G ++ G
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
AA+ GQ + +++ AD + DN G +PLH AA G + + +LL A D
Sbjct: 21 AARAGQDDEVRILIANG-ADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
G TPLH AA+ G+LE VL++ G D+ D TG TP LA+D+ H ++ L
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGA--DVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V+ D G L AA + ++++G DVNA
Sbjct: 84 LHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 101 DHTGQTALHWSAVRGAIQVAE 121
D G+TA S G +A+
Sbjct: 143 DKFGKTAFDISIDNGNEDLAK 163
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
G+T LH +A G ++V +LLL GA VNA D G H+AA+ G + ++ + A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
D + D +GR+PLH AA G + ++LLL A +DK G TPLH AA G+LE +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 223 LVQAG 227
L++AG
Sbjct: 120 LLEAG 124
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
G L AA N + ++E G DVNA D G+T LH +A G ++V +LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
NA D G H+AA+ G + ++ + AD + D +GR+PLH AA G + ++LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 191 LFLDAY 196
L AY
Sbjct: 121 LEAGAY 126
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G LE ++ L+E G V+ D G L AA N + ++E G DV
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
NA D G+T LH +A G ++V +LLL GA VNA D G H+AA+ G
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
+GR+PLH AA G + ++LLL A +DK G TPLH AA G+LE +L++AG
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
D+ D G TP LA+ H +V L
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G LE ++ L+E G V+ D G L AA N + ++E G DV
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
NA D G+T LH +A G ++V +LLL GA
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.0 bits (227), Expect = 9e-19, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
Y H+AA+ G + ++ K AD + D DG +PLH AA +G + + +LL A
Sbjct: 69 YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
QDK G TP A GN + VL +A
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D GY H+AA+ G + ++ K AD + D DG +PLH AA +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +DK+G TPLH AA G+LE VL++AG D+ D G T
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFLGNA 261
P LA D + +A L A
Sbjct: 137 PFDLAIDNGNEDIAEVLQKA 156
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D GY L AA + +++ G DVNA D G T LH +A
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D GY H+AA+ G + ++ K AD + D G++P
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTP 137
Query: 175 LHWAAYKGFADCIRLL 190
A G D +L
Sbjct: 138 FDLAIDNGNEDIAEVL 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 88 QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
+ ++ +G DVNAAD+TG T LH +A G +++ E+LL+ GA V+A+D++GY H+AA +
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
G + ++ K AD + D+DG +PLH AA G+ + + +LL A QDK G T
Sbjct: 91 GHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 208 LHWAAIRGNLEACTVL 223
+ GN + +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNAAD G H+AA G + ++ K AD D D G +PLH AAY
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D +G TPLH AA G LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + + +++HG DV+A+D G T LH +A
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G H+AA++G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V D GY L AA + ++++G DVNA
Sbjct: 51 LHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
D G T LH +A G +++ E+LL+ GA VNA D +G ++ G L I+ K
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKL 168
Query: 161 N 161
N
Sbjct: 169 N 169
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
Y H+AA+ G + ++ K AD + D DG +PLH AA +G + + +LL A
Sbjct: 69 YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
QDK G TP A G+ + VL +A
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D GY H+AA+ G + ++ K AD + D DG +PLH AA +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +DK+G TPLH AA G+LE VL++AG D+ D G T
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFLGNA 261
P LA + H +A L A
Sbjct: 137 PFDLAIREGHEDIAEVLQKA 156
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D GY L AA + +++ G DVNA D G T LH +A
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D GY H+AA+ G + ++ K AD + D G++P
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTP 137
Query: 175 LHWAAYKGFADCIRLL 190
A +G D +L
Sbjct: 138 FDLAIREGHEDIAEVL 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L AA + + ++ +G DVNA D+ G T LH +A G +++ E+LL+ GA VNA+D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD 194
+ G H+AA G + ++ K AD + DNDG +PLH AA G + + +LL
Sbjct: 78 LTGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 195 AYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
A QDK G T + GN + +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D GY L AA N + ++++G DVNA+D TG T LH +A
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G+ H+AA+YG + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D GY H+AA G + ++ K AD + D G +PLH AA
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D +G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G LE+L+ + + + D AL WA T +++++ G VN D G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
LH +A G ++ + LL +GA+VNA + G H AA + ++ + A+PD
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ + +H AA KG I +LL+ A QD EG TPLH A +E +LV G
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 228 KKEDLMVTDNTGLTPAQLA 246
+ + + TP Q+A
Sbjct: 196 A--SIYIENKEEKTPLQVA 212
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D D R+ LHWA G + + LL L +D G +PLH AA G E L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--G 94
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
K + + G TP A+ KN ++A L
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D +G+T LH +A++G +++ E+LL+ GA VNAAD G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA YG + ++ K AD + D G +PLH AA G + + +LL A
Sbjct: 81 DTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA+ + +++HG DVNAAD G T LH +A+
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D YG+ H+AA G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+ G++PLH AA KG + + +LL A DK G TPLH AA+ G+LE
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
VL++ G D+ TD G TP LA+D H ++
Sbjct: 98 VLLKNGA--DVNATDTYGFTPLHLAADAGHLEI 128
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G LE+L+ + + + D AL WA T +++++ G VN D G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
LH +A G ++ + LL +GA+VNA + G H AA + ++ + A+PD
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 136
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ + +H AA KG I +LL+ A QD EG TPLH A +E +LV G
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 228 KKEDLMVTDNTGLTPAQLA 246
+ + + TP Q+A
Sbjct: 197 A--SIYIENKEEKTPLQVA 213
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D D R+ LHWA G + + LL L +D G +PLH AA G E L+ G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--G 95
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
K + + G TP A+ KN ++A L
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
Y H+AA+ G + ++ K AD + D DG +PLH AA +G + + +LL A
Sbjct: 81 YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D GY H+AA+ G + ++ K AD + D DG +PLH AA +
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +DK+G TPLH AA G+LE VL++AG D+ D G T
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D GY L AA + +++ G DVNA D G T LH +A
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D GY H+AA+ G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G L++L+ + + + D AL WA T +++++ G VN D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
LH +A G ++ + LL +GA VNA + G H AA + ++ + A+PD
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ + +H AA KG + +LLF A QD EG TPLH A +E LV G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 228 KKEDLMVTDNTGLTPAQLAS 247
+ + + TP Q+A
Sbjct: 196 AS--IYIENKEEKTPLQVAK 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D D R+ LHWA G + + LL L +D G +PLH AA G E L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
+ + G TP A+ KN ++A L
Sbjct: 97 AH--VNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA+ G E ++ L+ +G V+ + G L +AA NR A ++E G + +A
Sbjct: 77 LHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
DH TA+H +A +G +++ +LL A N D G H+A + +V++
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ- 194
Query: 161 NADPDVPDNDGRSPLHWA 178
A + + + ++PL A
Sbjct: 195 GASIYIENKEEKTPLQVA 212
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
LG L+ AA R + ++ +G DVNAAD G T LH +A G +++ E+LL+ GA
Sbjct: 14 LGKKLLE-AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
VNA D G H+AA +G + ++ K AD + D++G +PLH AA +G + + +
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
LL A QDK G T + GN + +L
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNAAD+ G+ H+AA +G + ++ K AD + D G +PLH AA+
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +D G TPLH AA RG+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ + + +A L
Sbjct: 149 AFDISINNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D +G+ L AA + ++++G DVNA D G T LH +A
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G H+AA G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISINNGNEDLAEIL 165
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA +G LE ++ L++ G V+ D LG L AA + ++++G DVNA
Sbjct: 51 LHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
D G T LH +A RG +++ E+LL+ GA VNA D +G ++ G L I+ K
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED-LAEILQKL 168
Query: 161 N 161
N
Sbjct: 169 N 169
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G L++L+ + + + D AL WA T +++++ G VN D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
LH +A G ++ + LL +GA VNA + G H AA + ++ + A+PD
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ + +H AA KG + +LLF A QD EG TPLH A +E LV G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 228 KKEDLMVTDNTGLTPAQLAS 247
+ + + TP Q+A
Sbjct: 196 A--SIYIENKEEKTPLQVAK 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D D R+ LHWA G + + LL L +D G +PLH AA G E L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
+ + G TP A+ KN ++A L
Sbjct: 97 AH--VNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA+ G E ++ L+ +G V+ + G L +AA NR A ++E G + +A
Sbjct: 77 LHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
DH TA+H +A +G +++ +LL A N D G H+A + +V++
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ- 194
Query: 161 NADPDVPDNDGRSPLHWA 178
A + + + ++PL A
Sbjct: 195 GASIYIENKEEKTPLQVA 212
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D YG
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA G + ++ K AD + D +G +PLH AAY G + + +LL A
Sbjct: 81 ATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G+ H+AA+ G + ++ K+ AD + DN G +PLH AA
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +D EG TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D LG+ L AA + ++++G DVNA D+ G T LH +A
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G+ H+AA G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G+ L AA N + ++++G DVNA DH G T L +A+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA DM G+ H+AA +G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-IVEVLLKNGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
LG L+ AA R + ++ +G DVNA D +G T LH +A G +++ E+LL+ GA
Sbjct: 14 LGKKLLE-AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
VNA D G +AA +G + ++ K AD + D +G +PLH AA G + + +
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLE-IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
LL A QDK G T + GN + +L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G+ H+AA G + ++ K AD + D+ G +PL AA
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLE-IVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D EG TPLH AA+ G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V+ D G L+ AAL + ++++G DVNA
Sbjct: 51 LHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
D G T LH +A+ G +++ E+LL+ GA VNA D +G ++ G L I+ K
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED-LAEILQKL 168
Query: 161 N 161
N
Sbjct: 169 N 169
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G D NA DH G+T LH +A G +++ E+LLR GA VNA D G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA G + ++ K+ AD + D G +PL+ AAY G + + +LL A
Sbjct: 69 TTPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA NA D YG H+AA G + ++ + AD + D +G +PLH AA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A +D G TPL+ AA G+LE VL++ G D+ D G T
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 137 AFDISIDIGNEDLAEIL 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G + D G L AA + ++ +G DVNA D G T LH +A
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G ++AA +G + ++ K AD + D G++
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTA 137
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 138 FDISIDIGNEDLAEIL 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 88 QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
+ ++ +G DVNA+DH G T LH +A G +++ E+LL+ GA VNA D G H+AA
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
G + ++ K AD + D++G +PLH AA G + + +LL A QDK G T
Sbjct: 91 GHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 208 LHWAAIRGNLEACTVL 223
+ GN + +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D +G+ L AA + ++++G DVNA D G T LH +A R
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G ++V E+LL+ GA VNA D G+ H+AA G + ++ K AD + D G++
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA+D G+ H+AA +G + ++ K AD + D+ G +PLH AA +
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA +G LE ++ L++ G V+ D LG L AA + ++++G DVNA
Sbjct: 51 LHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
DH G T LH +A G +++ E+LL+ GA VNA D +G ++ G L I+ K
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKL 168
Query: 161 N 161
N
Sbjct: 169 N 169
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A + +L+ + +L+ G S P GY L AA N+ A+ ++++GG NA
Sbjct: 183 LHVAVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
G T LH +A G ++ LLL + A N + G H+ AQ G + ++ K
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP-VADVLIKH 300
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
D G +PLH A++ G ++ LL A + K G +PLH AA +G+ +
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLA 246
T+L++ G + + +D G TP +A
Sbjct: 361 TLLLKNGASPNEVSSD--GTTPLAIA 384
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLG---YYALQWAALNNRTAAAQYIIEHGGDV 97
++ AA YG + + L+E + + P+ G L A +N + ++ GG
Sbjct: 150 LHVAAKYGKVRVAELLLERD----AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
++ G T LH +A + ++VA LL+ G NA + G H+AAQ G + ++
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
SK A+ ++ + G +PLH A +G +L+ + G TPLH A+ GN+
Sbjct: 266 SKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324
Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPIG 276
+ L+Q + D+ G +P A+ + H V L N + DG +P+
Sbjct: 325 KLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382
Query: 277 KISKLGLAPALWCVILLMLVTYMHSVIMASN 307
+LG + +L +VT S ++ S+
Sbjct: 383 IAKRLGY---ISVTDVLKVVTDETSFVLVSD 410
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L AA T A+Y++++ VNA QT LH +A G + +LLL A N A
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD 194
G+ H+AA+ G + ++ K A G +PLH AA G LLL D
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 195 AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
A+ K G TPLH A NL+ +L+ G + G TP +A+ +N +V
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEV 227
Query: 255 AFFL 258
A L
Sbjct: 228 ARSL 231
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 205 CTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARR 263
TPLH A+ G+L L+Q G + V++ TP +A+ H +VA + L N +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 264 LLDKRCDGNSPIGKISKLG 282
+ K D +P+ +++G
Sbjct: 73 VNAKAKDDQTPLHCAARIG 91
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 5/217 (2%)
Query: 32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII 91
++ ++ R+ ++ AA G ++ LV+ G ++ L AA NN A +Y+I
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 92 EHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQT 150
+ G V+ D G T LH +A +G +V + LL G VN D G+ A +Y
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
+ ++SK +D ++ DN+ LHWAA+ G D +LL + G +PLH
Sbjct: 125 DLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
AA R N C VL + D+ + + G TP Q AS
Sbjct: 184 AA-RENRYDCVVLF-LSRDSDVTLKNKEGETPLQCAS 218
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
+++ G +++ +T L +A ++ + L++ GA V+ D G H+AA+ G
Sbjct: 30 LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH 89
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
+ +++S D + D+ G +P+ WA D ++LLL + +D E LH
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKR 268
WAA G ++ +L+ A K DL + G +P +A+ +N V FL + K
Sbjct: 150 WAAFSGCVDIAEILLAA--KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 269 CDGNSPI 275
+G +P+
Sbjct: 208 KEGETPL 214
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 3/184 (1%)
Query: 35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG 94
E R + AA LE ++ L++ G V D G L AA QY++ +G
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 95 G-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
DVN D G T + W+ + + +LLL +G+ +N D H AA + +
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-FSGCVDI 159
Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI 213
I+ D + G SPLH AA + DC+ L L D+ ++KEG TPL A++
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Query: 214 RGNL 217
+
Sbjct: 220 NSQV 223
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 29 GVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQ 88
G+ + + AA GD+E +++L + + + +G L +AA NR + +
Sbjct: 4 GISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 89 YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
Y+++HG DV+A D G LH + G +VAELL++ GA VN AD++ + H AA G
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPL 175
+ ++ + ADP + DG +PL
Sbjct: 124 KYEIC-KLLLQHGADPTKKNRDGNTPL 149
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
VN D+ G Q+T H AA Y + + + +++ + AD D G PLH A G +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
LL+ A D TPLH AA +G E C +L+Q G D + G TP L
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG--ADPTKKNRDGNTPLDLVK 153
Query: 248 DKNHRQVAFFLGNARRLLD 266
D + G+A LLD
Sbjct: 154 DGDTDIQDLLRGDA-ALLD 171
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA GD+E +++L + + + +G L +AA NR + +Y+++HG DV+A D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G LH + G +VAELL++ GA VN AD++ + H AA G+ ++ + AD
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC-KLLLQHGAD 133
Query: 164 PDVPDNDGRSPL 175
P + DG +PL
Sbjct: 134 PTKKNRDGNTPL 145
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
VN D+ G Q+T H AA Y + + + +++ + AD D G PLH A G +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
LL+ A D TPLH AA +G E C +L+Q G D + G TP L
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 149
Query: 248 DKNHRQVAFFLGNA 261
D + G+A
Sbjct: 150 DGDTDIQDLLRGDA 163
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA GD+E +++L + + + +G L +AA NR + +Y+++HG DV+A D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G LH + G +VAELL++ GA VN AD++ + H AA G+ ++ + AD
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC-KLLLQHGAD 135
Query: 164 PDVPDNDGRSPL 175
P + DG +PL
Sbjct: 136 PTKKNRDGNTPL 147
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
VN D+ G Q+T H AA Y + + + +++ + AD D G PLH A G +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
LL+ A D TPLH AA +G E C +L+Q G D + G TP L
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 151
Query: 248 DKNHRQVAFFLGNA 261
D + G+A
Sbjct: 152 DGDTDIQDLLRGDA 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D TG T LH +A G +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA+ G + ++ K AD + D+ G +PLH AA +G + + +LL A
Sbjct: 81 VTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G+ H+AA +G + ++ K AD + D+ G +PLH AA +
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AA RG+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G+ L AA + ++++G DVNA D G T LH +A R
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA+D +G+ H+AA+ G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA+ G + ++ K+ AD + D G +PLH AA G + + +LL A
Sbjct: 81 STPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + ++++G DVNA D +G T LH +A R
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D G H+AA G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D YG H+AA+ G + ++ K AD + D G +PLH AA +
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D +G T LH +A G +++ E+LL+ GA VNA D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA G + ++ K AD + D G +PLH AA G + + +LL A
Sbjct: 81 STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA D G T LH +A+
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D +G H+AA G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA YG + ++ K AD + D G +PLH AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AAI G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D +G T LH +A G +++ E+LL+ GA VNA D+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
H+AA G + ++ K AD + D G +PLH AA G + + +LL A
Sbjct: 81 STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA D G T LH +A+
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D +G H+AA G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA YG + ++ K AD + D G +PLH AA
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D G TPLH AAI G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 4/192 (2%)
Query: 68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
D G +L AA R AA+ +++ G D N+ D+TG+T LH + A+ V ++LLR
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 128 A-RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
A +NA G +AA+ + +++ +AD + DN G++ LHWAA +
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEA 166
Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
+ +LL A R QD + TPL AA G+ EA L+ + +TD+ P +A
Sbjct: 167 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE--ITDHMDRLPRDVA 224
Query: 247 SDKNHRQVAFFL 258
S++ H + L
Sbjct: 225 SERLHHDIVRLL 236
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 62 CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAE 121
++ D G AL WAA N T A ++ H + +A D +T L +A G+ + ++
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 201
Query: 122 LLL 124
LL
Sbjct: 202 ALL 204
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
LG L+ AA + + ++ +G DVNA D G T LH +A G ++ E+LL+ GA
Sbjct: 14 LGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
VNA D G+ H+AA G + ++ K+ AD + D G +PLH AA +G + + +
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
LL A QDK G T + GN + +L
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA G + ++ K AD + D DG +PLH AA
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A QD G TPLH AA RG+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA D G T LH +A
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D YG H+AA G + ++ K AD + D G++
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV-EVLLKHGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLLLFLD 194
+ G D +L L+
Sbjct: 150 FDISIDNGNEDLAEILQKLN 169
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA GQ + ++ K AD + D+ G +PLH AAY
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D+ G TPLH AA+ G LE VL++ G D+ D GLT
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQDALGLT 140
Query: 242 PAQLASDKNHRQVAFFL 258
++ ++ +A L
Sbjct: 141 AFDISINQGQEDLAEIL 157
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG 94
+ L + AAA G +++ R++ G V+ D G L AA N + + ++++G
Sbjct: 4 QDLGKKLLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 95 GDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLY 154
DVNA+D G T LH +A G +++ E+LL+ GA VNA D G+ H+AA GQ +
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV- 121
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ K AD + D G + + +G D +L
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L N + ++++ DVNA+D +G T LH +A R
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
G +++ E+LL+ GA VNA D GY H+AA+ G + ++ K+ AD + D G++
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
+ G D +L
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH G +++ E+LL+ A VNA+D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
+ H+AA G + ++ K+ AD + D G +PLH AA G + + +LL A
Sbjct: 81 WTPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
QDK G T + GN + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D +G H+ G + ++ K+ AD + D G +PLH AAY+
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
G + + +LL A D +G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V+ D GY L AA + + ++++G DVNA
Sbjct: 84 LHLAAYRGHLEIVEVLLK-YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 101 DHTGQTALHWSAVRGAIQVAELL 123
D G+TA S G +AE+L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
A + GD E++ RL+E G ++ + G AL A +++ ++++E+G ++N D+
Sbjct: 47 ACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHV-------------------- 143
G LH +A G + +AE L+ +GA V A + G +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 144 --AAQYGQTAFLYHIVSKWNADPDVPD----NDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
AA+ + + +W + D G + LH AA KG+ + ++LL+
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
+D +G TPLH AA G EAC +LV+
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60 EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
+G S+ ++ D G AL AA +R+ AA+ ++E D N D+ G+T LH + A
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
V ++L+R A A M+ T + AA+ L +++ +AD + D+ G+S LHW
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 163
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA D +LL A + Q+ TPL AA G+ E VL+ D +TD+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 221
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
P +A ++ H + L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLL 242
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
G+T LH +A G ++V +LLL GA VNA D G H+AA+ G + ++ + A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
D + D +GR+PLH AA G + ++LLL AY
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
+GR+PLH AA G + ++LLL A +DK G TPLH AA G+LE +L++AG
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
D+ D G TP LA+ H +V L
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
G L AA N + ++E G DVNA D G+T LH +A G ++V +LLL GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 131 NAADMYGYQTTHVAAQYGQ 149
NA D G H+AA+ G
Sbjct: 62 NAKDKNGRTPLHLAARNGH 80
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA G LE ++ L+E G V+ D G L AA N + ++E G DV
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA 128
NA D G+T LH +A G ++V +LLL GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 31 VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYI 90
V+ E ++++ AA G+ EKL L+ + DG L AA NR Q +
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 91 IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
++HG DV+A D G LH + G +V ELLL+ GA VNA D++ + H AA +
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWA 178
++S ADP + + G+S + A
Sbjct: 138 EVCSLLLS-HGADPTLVNCHGKSAVDMA 164
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A +YG E + L++ C V+ D + L AA NR ++ HG D
Sbjct: 95 LHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 101 DHTGQTALHWSAV-------------RGAIQVA-ELLLREGARVNAADMYGYQT--THVA 144
+ G++A+ + +Q A E L + + A ++ ++ +H
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 145 AQYGQTAFLY-------HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
A + A L+ ++ + A+ + + D +PLH AA + D + +L A
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 248
D G T LH AA+ G+L+ C +L+ G D + G T AQ+ ++
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYG--SDPSIISLQGFTAAQMGNE 322
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
A+ + +++ L+ +G +V+E + L AA + + +HG +NA D
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA 151
GQTALH +A+ G +Q LLL G+ + + G+ AAQ G A
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF----TAAQMGNEA 323
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
AA+ G L +++ N + D +PLH AA ++LLL A +DK
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
G PLH A G+ E +L++ G + M D TP A+ KN +V L
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAM--DLWQFTPLHEAASKNRVEVCSLL 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
+A+D H+AA Y + + ++ + AD D G PLH A G + LL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIV-QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
L A D TPLH AA + +E C++L+ G
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60 EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
+G S+ ++ D G AL AA +R+ AA+ ++E D N D+ G+T LH + A
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
V ++L+R A A M+ T + AA+ L +++ +AD + D+ G+S LHW
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 163
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA D +LL A + Q+ TPL AA G+ E VL+ D +TD+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 221
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
P +A ++ H + L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLL 242
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60 EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
+G S+ ++ D G AL AA +R+ AA+ ++E D N D+ G+T LH + A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
V ++L+R A A M+ T + AA+ L +++ +AD + D+ G+S LHW
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 164
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA D +LL A + Q+ TPL AA G+ E VL+ D +TD+
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 222
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
P +A ++ H + L
Sbjct: 223 MDRLPRDIAQERMHHDIVRLL 243
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60 EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
+G S+ ++ D G AL AA +R+ AA+ ++E D N D+ G+T LH + A
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
V ++L+R A A M+ T + AA+ L +++ +AD + D+ G+S LHW
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 131
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA D +LL A + Q+ TPL AA G+ E VL+ D +TD+
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 189
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
P +A ++ H + L
Sbjct: 190 MDRLPRDIAQERMHHDIVRLL 210
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D +G L AA+N+ + ++++G DVNA D G+T LH A+
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMY 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL+ GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A+ +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
H+ A YG + ++ K AD + D G++ + G D +L
Sbjct: 81 ETPLHLVAMYGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D G +PLH AA + + +LL A D G TPLH A+ G+LE
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A +DK G TPLH AA+ +LE VL++ G D+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA--DVNAIDA 78
Query: 238 TGLTPAQLASDKNHRQV 254
G TP L + H ++
Sbjct: 79 IGETPLHLVAMYGHLEI 95
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA LE ++ L++ G V+ D +G L A+ + +++HG DVNA
Sbjct: 51 LHLAAMNDHLEIVEVLLK-NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 101 DHTGQTALHWSAVRGAIQVAELL 123
D G+TA S G +AE+L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60 EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
+G S+ ++ D G AL AA +R+ AA+ ++E D D+ G+T LH + A
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 119 VAELLLREGARVNAADMY-GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
V ++LLR A A M+ G +AA+ L +++ +AD + D+ G+S LHW
Sbjct: 70 VFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS-HADVNAVDDLGKSALHW 128
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA D +LL A + Q+ + TPL AA G+ E VL+ D +TD+
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD--ITDH 186
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
P +A ++ H + L
Sbjct: 187 MDRLPRDIAQERMHHDIVRLL 207
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
AAA GD+++++RL+ E + PD L G ALQ + TA A +++ G N
Sbjct: 15 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQ 70
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
D +G + +H +A G + ++L+ GA VN D G H+A Q G TA +VS
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFL 126
Query: 161 NADPDVPDNDGR--SPLHWAAYKGFADCIRLL 190
A+ D+ D R +PL A +G D + +L
Sbjct: 127 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
L +A RG +Q V LL RE +A + +G V +G TA ++ K A P+V
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 69
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
D G SP+H AA GF D +++L+ A D G P+H A G+ + L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 126
Query: 227 GKKEDLMVTDNTGLTPAQLA 246
+ DL D GLTP +LA
Sbjct: 127 AAESDLHRRDARGLTPLELA 146
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
AAA GD+++++RL+ E + PD L G ALQ + TA A +++ G N
Sbjct: 9 AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQ 64
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
D +G + +H +A G + ++L+ GA VN D G H+A Q G TA +VS
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFL 120
Query: 161 NADPDVPDNDGR--SPLHWAAYKGFADCIRLL 190
A+ D+ D R +PL A +G D + +L
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
L +A RG +Q V LL RE +A + +G V +G TA ++ K A P+V
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 63
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
D G SP+H AA GF D +++L+ A D G P+H A G+ + L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 120
Query: 227 GKKEDLMVTDNTGLTPAQLA 246
+ DL D GLTP +LA
Sbjct: 121 AAESDLHRRDARGLTPLELA 140
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
L +A RG +Q V LL RE +A + +G V +G A ++ K A P+V
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 71
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
D G SP+H AA GF D +++L+ A D G P+H A G+ + L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 128
Query: 227 GKKEDLMVTDNTGLTPAQLASDK 249
+ DL D +GLTP +LA +
Sbjct: 129 APESDLHHRDASGLTPLELARQR 151
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAA 86
++++E + + + AAA GD+++++RL+ E + PD L G ALQ + A
Sbjct: 3 MLLEEVCVGDRLSGAAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-PAV 58
Query: 87 AQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
A +++ G N D +G + +H +A G + ++L+ GA VNA D G H+A +
Sbjct: 59 ALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 118
Query: 147 YGQTAFLYHIVSKWNADPDVPDND--GRSPLHWAAYKGFADCIRLL 190
G ++ +VS + D+ D G +PL A +G + + +L
Sbjct: 119 EGHSS----VVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV-----N 98
AA D++ L +L++ EGC V + +G AL AAL + AA ++E ++
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
+ + GQTALH + + + + LL GA V+A + T Y +Y+
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSA------RATGSVFHYRPHNLIYY--- 120
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
G PL +AA G + +RLL+ A QD G T LH ++ N
Sbjct: 121 ------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168
Query: 219 -AC---TVLVQAGKKEDL----MVTDNTGLTPAQLA 246
AC +L+ + L +V +N GLTP +LA
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
L +A RG +Q V LL RE +A + +G V +G A ++ K A P+V
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 69
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
D G SP+H AA GF D +++L+ A D G P+H A G+ + L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 126
Query: 227 GKKEDLMVTDNTGLTPAQLASDK 249
+ DL D +GLTP +LA +
Sbjct: 127 APESDLHHRDASGLTPLELARQR 149
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAA 86
++++E + + + AAA GD+++++RL+ E + PD L G ALQ + A
Sbjct: 1 MLLEEVCVGDRLSGAAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-PAV 56
Query: 87 AQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
A +++ G N D +G + +H +A G + ++L+ GA VNA D G H+A +
Sbjct: 57 ALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 116
Query: 147 YGQTAFLYHIVSKWNADPDVPDND--GRSPLHWAAYKGFADCIRLL 190
G ++ +VS + D+ D G +PL A +G + + +L
Sbjct: 117 EGHSS----VVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R + A G + +LVE + + D G AL WA NNR A+ ++ G +V
Sbjct: 36 RTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
N D +G+T L WS + G +++ LL GA VN ++ G VA++YG++
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 36/178 (20%)
Query: 86 AAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA 145
A ++E+ + D G TAL W+ + +AE LL +G+ VN D
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF---------- 99
Query: 146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC 205
G++PL W+ G+++ LL A ++ EG
Sbjct: 100 ------------------------SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
TPL A+ G E L++ G D+ D TGLT A ++V RR
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 60 EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQV 119
+G +V+ D G L W+ + + + +++EHG +VN + G+T L ++ G ++
Sbjct: 90 KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEI 149
Query: 120 AELLLREGARVNAADMYGYQTTHVAAQYGQ 149
+ LL GA ++A D+ G A +G+
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFGR 179
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA+D G+T LH +A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA+ G + ++ K AD + D+ GR+PLH AA
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+ G +PLH AA +G + + +LL A D G TPLH AA G+LE
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
A G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ +D+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDS 78
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
G TP LA+ H ++ L
Sbjct: 79 WGRTPLHLAATVGHLEIVEVL 99
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 26/236 (11%)
Query: 49 DLEKLQRLVECEGCSVS--EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQT 106
D++ +Q+L+E G +V+ E +G G+ L A +R + ++ HG D G T
Sbjct: 17 DVDLVQQLLEG-GANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74
Query: 107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT---AFLY------HIV 157
+A+ G++++ +L L +GA VN D YG+ AA YG+ FLY ++
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIR-- 214
K D + G + L AA KG + +++LL + A D G L A +
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194
Query: 215 -GNLEACT-VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKR 268
++EA T +L+ G D+ V G TP LA +K H LG +RLL++
Sbjct: 195 DSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKH------LGLVQRLLEQE 242
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 42/145 (28%)
Query: 33 DEESLRNDVYTA----AAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNR----T 84
D+E LR TA A G +E L+ L++ G V+ D +G AL A L++
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 85 AAAQYIIEHGGDVNA----------------------------------ADHTGQTALHW 110
A +++HG DVN D G+TAL
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Query: 111 SAVRGAIQVAELLLREGARVNAADM 135
+ ++AELL + GA + D+
Sbjct: 260 AVELKLKKIAELLCKRGASTDCGDL 284
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + ++++G DVNA D+ G T LH +A+R
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL+ GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D DG +PLH AA G + + +LL A +D G TPLH AAIRG+LE
Sbjct: 38 ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
H+AA G + ++ K AD + D G++ + G D +L
Sbjct: 81 ITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AAQ G + ++ K+ AD + DN G +PLH AA +
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDNFGITPLHLAAIR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A D++G TPLH AA G+LE VL++ G D+ DN
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA--DVNAEDN 78
Query: 238 TGLTPAQLASDKNHRQV 254
G+TP LA+ + H ++
Sbjct: 79 FGITPLHLAAIRGHLEI 95
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + + +++HG DVNA D+ G T LH +A+
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL+ GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
H+AA +G + ++ K AD + D G++ + G D +L
Sbjct: 81 STPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
+L+ GA VNA D G H+AA Y + ++ K AD + DNDG +PLH AA
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
G + + +LL A QDK G T + GN + +L
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D G +PLH AA + + +LL A D +G TPLH AA+ G+LE
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A D++G TPLH AA +LE VL++ G D+ DN
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA--DVNAHDN 78
Query: 238 TGLTPAQLASDKNHRQV 254
G TP LA+ H ++
Sbjct: 79 DGSTPLHLAALFGHLEI 95
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 49 DLEKLQRLVECEGCSVS--EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQT 106
D++ +Q+L+E G +V+ E +G G+ L A +R + ++ HG D G T
Sbjct: 37 DVDLVQQLLEG-GANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94
Query: 107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT---AFLY------HIV 157
+A+ G++++ +L L +GA VN D YG+ AA YG+ FLY ++
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIR-- 214
K D + G + L AA KG + +++LL + A D G L A +
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214
Query: 215 -GNLEACT-VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK 267
++EA T +L+ G D+ V G TP LA +K H LG +RLL++
Sbjct: 215 DSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKH------LGLVQRLLEQ 261
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 49/177 (27%)
Query: 33 DEESLRNDVYTA----AAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNR----T 84
D+E LR TA A G +E L+ L++ G V+ D +G AL A L++
Sbjct: 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 219
Query: 85 AAAQYIIEHGGDVNA----------------------------------ADHTGQTALHW 110
A +++HG DVN D G+TAL
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 279
Query: 111 SAVRGAIQVAELLLREGARVNAADM-------YGYQTTHVAAQYGQTAFLYHIVSKW 160
+ ++AELL + GA + D+ Y + V +G + W
Sbjct: 280 AVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDW 336
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA+D G+T LH +A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 34/134 (25%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
++ +G DVNA D G T LH +A RG +++ E+LL+ GA VNA+D++
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW------------- 79
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
GR+PLH AA G + + +LL A QDK G T
Sbjct: 80 ---------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
Query: 210 WAAIRGNLEACTVL 223
+ GN + +L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+ G +PLH AA +G + + +LL A D G TPLH AA G+LE
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
A G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ +D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDI 78
Query: 238 TGLTPAQLASDKNHRQV 254
G TP LA+ H ++
Sbjct: 79 WGRTPLHLAATVGHLEI 95
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA + +++HG DVNA D G+T LH +A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
G +++ E+LL GA VNA D +G ++ G L I+ K N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 34/134 (25%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
++ +G DVNA D G T LH +A RG +++ E+LL+ GA VNA D++
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------------- 79
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
GR+PLH AA G + + +LL A QDK G T
Sbjct: 80 ---------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
Query: 210 WAAIRGNLEACTVL 223
+ GN + +L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D+ G +PLH AA +G + + +LL A +D G TPLH AA G+LE
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ D + +A L
Sbjct: 98 VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
A G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNARDI 78
Query: 238 TGLTPAQLASDKNHRQV 254
G TP LA+ H ++
Sbjct: 79 WGRTPLHLAATVGHLEI 95
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L A + + ++++G DVNA D G T LH +A
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 115 GAIQVAELLLREGARVNAADMYG 137
G +++AE+LL+ GA VNA D +G
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFG 113
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T L+ + G +++ E+LL+ GA VNA D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ H+AA G + ++ K AD + D G++ + G D +L
Sbjct: 81 FTPLHLAAFIGHLE-IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
+Y A A+G LE ++ L++ G V+ D +G+ L AA A+ +++HG DVNA
Sbjct: 51 LYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 101 DHTGQTALHWSAVRGAIQVAELL 123
D G+TA S G +AE+L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A +D+ G TPL+ A G+LE VL++ G D+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--DVNAVDA 78
Query: 238 TGLTPAQLASDKNHRQVA 255
G TP LA+ H ++A
Sbjct: 79 IGFTPLHLAAFIGHLEIA 96
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D G +PL+ A G + + +LL A D G TPLH AA G+LE
Sbjct: 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D G T ++ + +A L
Sbjct: 98 VLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G+ L AA+ + ++++G DVNA +TG+T LH +A
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
+++ E+LL+ GA VNA D +G ++ G
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 34/136 (25%)
Query: 88 QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
+ + +G DVNA D+ G T LH +A+ G +++ E+LL+ GA VNA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA--------------- 75
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
N GR+PLH AA+ + + +LL A QDK G T
Sbjct: 76 -------------------TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 208 LHWAAIRGNLEACTVL 223
+ GN + +L
Sbjct: 117 FDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
AA+ GQ + I++ AD + D G +PLH AA G + + +LL A
Sbjct: 21 AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
G TPLH AA +LE VL++ G D+ D G T ++ D + +A L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G LE ++ L++ G V+ G L AA + + +++HG DVNA
Sbjct: 51 LHLAAMLGHLEIVEVLLK-NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 101 DHTGQTALHWSAVRGAIQVAELLLR 125
D G+TA S G +AE+L +
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 107 ALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
++H A +G + + LR+G VN D G+ A+ +G+ + ++ +W ADP
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPH 63
Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
+ + S L A+ G+ D + LLL D D G TPL + A+RGN C +
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALL 122
Query: 226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
A + DL ++G TP LA +R+V + N
Sbjct: 123 A-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G+L++L+ + V++PD G+ L WA+ ++++E G D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
++AL ++ G + LLL +N D G A + + ++++
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR- 124
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
AD + G +P+ A G+
Sbjct: 125 GADLTTEADSGYTPMDLAVALGY 147
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 34/141 (24%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
G L A++ + +Y++++G D N DH G T LH + G ++V ELLL+ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
N GYQ ND SPLH AA G D ++LL
Sbjct: 70 NTT---GYQ-----------------------------ND--SPLHDAAKNGHVDIVKLL 95
Query: 191 LFLDAYRGRQDKEGCTPLHWA 211
L A R + G P+ +
Sbjct: 96 LSYGASRNAVNIFGLRPVDYT 116
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 36/158 (22%)
Query: 100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
+H G+T LH ++++G I E LL+ G+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGS------------------------------- 34
Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
DP+V D+ G +PLH A G + LLL A + +PLH AA G+++
Sbjct: 35 ---DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91
Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF 257
+L+ G + + GL P D++ + +
Sbjct: 92 VKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLL 127
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A+ GD+ ++ L++ G + D G+ L A + + +++H VN
Sbjct: 14 LHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ 139
+ + LH +A G + + +LLL GA NA +++G +
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
DG +PLH AA G A+ ++ LL A + K+G TPLH AA G+ E +L+ G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-- 65
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
D+ G TP LA H ++ L
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
G H AA+ G + ++SK AD + DG +PLH AA G A+ ++LLL A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 197 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
+ K+G TP H A G+ E +L G
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
G L AA N + ++ G DVNA G T LH +A G ++ +LLL +GA V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 131 NAADMYGYQTTHVAAQYGQ 149
NA G H+A + G
Sbjct: 69 NARSKDGNTPEHLAKKNGH 87
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G T LH +A G + + LL +GA VNA G H+AA+ G + +++K AD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GAD 67
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ DG +P H A G + ++LL
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G E++++L+ +G V+ G L AA N + ++ G DVNA
Sbjct: 13 LHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
G T H + G ++ +LL +GA VNA
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 202 KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGN 260
K+G TPLH AA G+ E L+ G D+ G TP LA+ H + V L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 261 ARRLLDKRCDGNSP 274
+ + DGN+P
Sbjct: 65 GADVNARSKDGNTP 78
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 107 ALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
++H A +G + + LR+G VN D G+ A+ +G+ + ++ +W ADP
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPH 63
Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
+ + S L A+ G+ D + LLL D D G TPL + A+ GN C +
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALL 122
Query: 226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
A + DL ++G TP LA +R+V + N
Sbjct: 123 A-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 34/175 (19%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA G+L++L+ + V++PD G+ L WA+ ++++E G D +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
++AL ++ G + LLL +N D W
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYD-------------------------W 100
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG 215
N G +PL +A + C+ LL A + G TP+ A G
Sbjct: 101 N---------GGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
+D++T G+ ++ ++ +++ D G+ L WA R+A + +I G +N
Sbjct: 2 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH--- 155
+ T LH +A G + + LL+ A +NA + +G H A +GQ
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 156 ---IVSKWNADPDVPDNDGRSPL 175
+VS N ++P + ++PL
Sbjct: 122 NGALVSICNKYGEMPVDKAKAPL 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
+N D +G+ H A + G++A + ++ + A +V + +PLH AA G D ++
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
LL A ++ G PLH+A G + LV G
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ G SPLHWA +G + + +L+ A ++ TPLH AA G+ + L+Q
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY- 89
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVA 255
K D+ + G P A QVA
Sbjct: 90 -KADINAVNEHGNVPLHYACFWGQDQVA 116
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
+D++T G+ ++ ++ +++ D G+ L WA R+A + +I G +N
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH--- 155
+ T LH +A G + + LL+ A +NA + +G H A +GQ
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 156 ---IVSKWNADPDVPDNDGRSPL 175
+VS N ++P + ++PL
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPL 149
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
+N D +G+ H A + G++A + ++ + A +V + +PLH AA G D ++
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
LL A ++ G PLH+A G + LV G
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D+ G SPLHWA +G + + +L+ A ++ TPLH AA G+ + L+Q
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY- 94
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVA 255
K D+ + G P A QVA
Sbjct: 95 -KADINAVNEHGNVPLHYACFWGQDQVA 121
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
N++ +AAA GDLE+L L++ +V+ +G G ALQ L N
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGN---------------- 49
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
++A LL GA + D G+ H AA+ GQ L ++
Sbjct: 50 ------------------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLL- 90
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQDKEGCTPLHWAAIRGNL 217
++ AD ++ DN+G PLH AA +G + L+ A G ++ +G T A + G
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 218 EACTVLVQAG 227
E +++ G
Sbjct: 151 EVVSLMQANG 160
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 94 GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
G VN G + LH +A+ G + LLL+ GA A + H+A Q G +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI 213
++ NA P+ D G +PL +A G + + LLL A + +G T LH A I
Sbjct: 136 KCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 214 RGNLEACTVLVQAG 227
++ +L+ G
Sbjct: 195 EKHVFVVELLLLHG 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
G VN G HVAA +G+ A L ++ K A+ + D PLH A +G
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGR-ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
++ LL +A ++D G TPL +A G+ E +L+Q G + ++N G T A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA--SINASNNKGNTALHEA 192
Query: 247 SDKNHRQVAFFL---GNARRLLDKR 268
+ H V L G + ++L+KR
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKR 217
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 61 GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
G +V+ DG L AAL+ R +++HG + A + LH + +G QV
Sbjct: 78 GVNVTSQDG--SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
+ LL A+ N D+ G T + A G L ++ + A + +N G + LH A
Sbjct: 136 KCLLDSNAKPNKKDLSG-NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 181 KGFADCIRLLLF 192
+ + LLL
Sbjct: 195 EKHVFVVELLLL 206
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
+++HG +NA+++ G TALH + + + V ELLL GA V + A Q +
Sbjct: 171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230
Query: 150 TAFLYHIVSKWNAD-PDVPDNDGRS 173
L +V A DV + D +
Sbjct: 231 IMELLQVVPSCVASLDDVAETDRKE 255
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
A+PD+ D G + +H AA GF D ++ LL A +D EG PLH AA G+L
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
LV+
Sbjct: 121 FLVK 124
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
N++ +AAA GDLE+L L++ +V+ +G G ALQ L N A + ++ G + +
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPD 64
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
D TG +H +A G + + LL A VN D G H+AA+ G + +V
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ ++ G + A G + + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DVNA D G T LH +A G +++ E+LL+ GA VNA D +G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A +DK+G TPLH AA G+LE VL++AG D+ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDK 66
Query: 238 TGLTPAQLASDKNHRQVAFFLGNA 261
G T ++ D + +A L A
Sbjct: 67 FGKTAFDISIDNGNEDLAEILQKA 90
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D GY L AA + +++ G DVNA D G+TA S
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 78
Query: 115 GAIQVAELL 123
G +AE+L
Sbjct: 79 GNEDLAEIL 87
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD + D DG +PLH AA +G + + +LL A QDK G T + GN +
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 85
Query: 222 VLVQAG 227
+L +A
Sbjct: 86 ILQKAA 91
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A + K+Q L+ + + + D G L W+ +++ +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
D+ +G T H + G ++V + L + +N G H+A G+ F +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
+ + A + D + PLH AA G I LL L + QDK+G TPL A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
D DGR PLHW+ + LL LD Y D G TP H A GNLE
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
L K DL N G+T LA K +V+ FL G + R+ DK
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 73 YALQWAALNNRTAAAQYIIEHGGDVN-AADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
Y L A + N Q ++ + D G+ LHWS A ++ LL + VN
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 132 AADM---YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-----NDGRSPLHWAAYKGF 183
D G+ H+A G + + + P PD N G + LH A K +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
+ + L+ A +DK PLH AA G+L+ +L GK + D G TP
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPL 178
Query: 244 QLASDKNHRQVAFFL 258
A + H A L
Sbjct: 179 FHALAEGHGDAAVLL 193
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A + K+Q L+ + + + D G L W+ +++ +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
D+ +G T H + G ++V + L + +N G H+A G+ F +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
+ + A + D + PLH AA G I LL L + QDK+G TPL A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
D DGR PLHW+ + LL LD Y D G TP H A GNLE
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
L K DL N G+T LA K +V+ FL G + R+ DK
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 73 YALQWAALNNRTAAAQYIIEHGGDVN-AADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
Y L A + N Q ++ + D G+ LHWS A ++ LL + VN
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 132 AADM---YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-----NDGRSPLHWAAYKGF 183
D G+ H+A G + + + P PD N G + LH A K +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
+ + L+ A +DK PLH AA G+L+ +L GK + D G TP
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPL 178
Query: 244 QLASDKNHRQVAFFL 258
A + H A L
Sbjct: 179 FHALAEGHGDAAVLL 193
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ A + K+Q L+ + + + D G L W+ +++ +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
D+ +G T H + G ++V + L + +N G H+A G+ F +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
+ + A + D + PLH AA G I LL L + QDK+G TPL A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
D DGR PLHW+ + LL LD Y D G TP H A GNLE
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
L K DL N G+T LA K +V+ FL G + R+ DK
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 73 YALQWAALNNRTAAAQYIIEHGGDVN-AADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
Y L A + N Q ++ + D G+ LHWS A ++ LL + VN
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 132 AADM---YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-----NDGRSPLHWAAYKGF 183
D G+ H+A G + + + P PD N G + LH A K +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
+ + L+ A +DK PLH AA G+L+ +L GK + D G TP
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPL 178
Query: 244 QLASDKNHRQVAFFL 258
A + H A L
Sbjct: 179 FHALAEGHGDAAVLL 193
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
A+PD+ D G + +H AA GF D ++ LL A +D EG PLH AA G+L
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
LV+
Sbjct: 121 FLVK 124
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
N++ +AAA GDLE+L L++ +V+ +G G ALQ L N A + ++ G + +
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPD 64
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
D TG +H +A G + + LL A VN D G H+AA+ G + +V
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ ++ G + A G + + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
A+PD+ D G + +H AA GF D ++ LL A +D EG PLH AA G+L
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
LV+
Sbjct: 121 FLVK 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
N++ +AAA GDLE+L L++ +V+ +G G ALQ L N A + ++ G + +
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPD 64
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
D TG +H +A G + + LL A VN D G H+AA+ G + +V
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ ++ G + A G + + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 97 VNAADHTGQTALHWSAVRGAIQVAELLLREGA-RVNAADMYGYQTTHVAAQYG------- 148
VN AD G TALH+S V + LL G +V+ + GY + A
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPL 208
+T + NA G++ L A G D ++ LL +A QD +G T L
Sbjct: 164 ETVLQLFRLGNINAK---ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
Query: 209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
A G+ E +L+ A D+ +TD G T +A D ++A L
Sbjct: 221 MCACEHGHKEIAGLLL-AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIE------HG 94
++ + ++ + +Q+L++ C V + + GY + AL T Q IE
Sbjct: 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL--ATLKTQDDIETVLQLFRL 172
Query: 95 GDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
G++NA A GQTAL + G + V + LL A VN D G A ++G
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232
Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
+++ + D + D DG + L A G ++ +L
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 32/172 (18%)
Query: 95 GDVNAADHTGQTALHWSAV---RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA 151
GD+ D G TAL A R + A+LL+ +GA+V D G
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV---DYDGA------------- 269
Query: 152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHW 210
A D GR+ LH+AA ++ L+ + + +QD++G TP+
Sbjct: 270 ----------ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR 262
AA G +E L+Q G + D T T QLA NH + R
Sbjct: 320 AAQEGRIEVVXYLIQQGAS--VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 71 GYYALQWAALNNRTAAAQYII-EHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
G AL +AA + +Y++ E G + + D G+T + +A G I+V L+++GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIV 157
V A D T H A Q Q ++IV
Sbjct: 339 VEAVDA----TDHTARQLAQANNHHNIV 362
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 105 QTALHWSAVRGAIQVAE-LLLRE-------GARVNAADMYGYQTTHVAAQYGQTAFLYHI 156
+T LHW A + + +E L++ E GA VNA D T A + L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDC-DENTPLXLAVLARRRRLVAY 184
Query: 157 VSKWNADPDVPDNDGRSPLHW-AAYKGFADCIRLL--LFLDAYRGRQDKEGCTPLHWAAI 213
+ K ADP + + RS LH AA + F + L L D+ G T L A
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAH 244
Query: 214 ---RGNLEACTVLVQAGKKED 231
R + + +LV+ G K D
Sbjct: 245 NEGRDQVASAKLLVEKGAKVD 265
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA YG + L+ G S + L AA + +++HG DVNA
Sbjct: 38 LHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF 152
D TALHW+ +V ELL++ GA V H +++ +TAF
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADV-----------HTQSKFCKTAF 137
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
D G H+AAQYG + ++ + D R+PLH AA +G A+ + +LL
Sbjct: 31 DWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
A +D T LHWA + E +L++ G
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
N P D G SPLH AA G +LL R + K TPLH AA G+
Sbjct: 24 NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV 83
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL++ G D+ D +T A++ NH++V L
Sbjct: 84 EVLLKHGA--DVNAKDMLKMTALHWATEHNHQEVVELL 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G + D LG L AA + + ++ G +A +T LH +A
Sbjct: 19 RILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G + E+LL+ GA VNA DM H A ++ + ++ K+ AD
Sbjct: 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGAD 125
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
G + LH +A G E+LLR G +A H+AA G A + ++ K AD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH-ANIVEVLLKHGAD 92
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
+ D + LHWA + + LL+ A Q K T + GN + +L
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
R ++ AA+ G ++ L++ G V+ D L AL WA +N + +I++G DV
Sbjct: 68 RTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 98 NAADHTGQTALHWSAVRGAIQVAELL 123
+ +TA S G +AE+L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G+ + +QR++ E S P+ G AL A T +++++ G +VNAAD G T
Sbjct: 48 GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-----HVAAQYGQ-TAFLYHIVSK-- 159
LH +A +QV + L+ GA V A QT + Y Q + FLY + K
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 160 ----------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA------YRGRQDKE 203
W+ + P ND P+ DC+ ++ D + DKE
Sbjct: 167 IMNKGVIYALWDYE---PQNDDELPMK------EGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 204 GCTP 207
G P
Sbjct: 218 GYVP 221
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
DP +P+++G + LH A G + ++ L+ D +G TPLH AA N++ C
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 223 LVQAG 227
LV++G
Sbjct: 122 LVESG 126
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
++L Q II D + + G TALH + G ++ + L++ G VNAAD G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 YQTTHVAA 145
+ H AA
Sbjct: 104 WTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
G+ + +QR++ E S P+ G AL A T +++++ G +VNAAD G T
Sbjct: 48 GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-----HVAAQYGQ-TAFLYHIVSK-- 159
LH +A +QV + L+ GA V A QT + Y Q + FLY + K
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 160 ----------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA------YRGRQDKE 203
W+ + P ND P+ DC+ ++ D + DKE
Sbjct: 167 IMNKGVIYALWDYE---PQNDDELPMK------EGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 204 GCTP 207
G P
Sbjct: 218 GYVP 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
DP +P+++G + LH A G + ++ L+ D +G TPLH AA N++ C
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 223 LVQAG 227
LV++G
Sbjct: 122 LVESG 126
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
++L Q II D + + G TALH + G ++ + L++ G VNAAD G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 YQTTHVAA 145
+ H AA
Sbjct: 104 WTPLHCAA 111
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
V+ AA G++ L +E E ++ D G+ L WAA + + A ++++++G D
Sbjct: 5 VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
++AL + +G + ++LL G VN D G T + A +G ++ +
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 122
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
ADP + + G + + A G+
Sbjct: 123 GADPTIETDSGYNSMDLAVALGY 145
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91 IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
IE +N D G T L W+A G I V E LL+ G
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 57
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
ADP + S L A KG+ D +++LL D G TPL +
Sbjct: 58 -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 106
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
A +++ +L+++G D + ++G LA +R V
Sbjct: 107 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 148
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
N++ +AAA GDLE+L L++ +V+ +G G ALQ L N A + ++ G + +
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPD 64
Query: 99 AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
D TG +H +A G + + LL A VN D G H+AA+ G + +V
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ ++ G + A G + + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
A+PD+ D G + +H AA GF D ++ LL A +D EG PLH AA G+L
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
LV+
Sbjct: 121 FLVK 124
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
V+ AA G++ L +E E ++ D G+ L WAA + + A ++++++G D
Sbjct: 23 VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
++AL + +G + ++LL G VN D G T + A +G ++ +
Sbjct: 82 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 140
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
ADP + + G + + A G+
Sbjct: 141 GADPTIETDSGYNSMDLAVALGY 163
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91 IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
IE +N D G T L W+A G I V E LL+ G
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 75
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
ADP + S L A KG+ D +++LL D G TPL +
Sbjct: 76 -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
A +++ +L+++G D + ++G LA +R V
Sbjct: 125 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 166
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
V+ AA G++ L +E E ++ D G+ L WAA + + A ++++++G D
Sbjct: 7 VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
++AL + +G + ++LL G VN D G T + A +G ++ +
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 124
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
ADP + + G + + A G+
Sbjct: 125 GADPTIETDSGYNSMDLAVALGY 147
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91 IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
IE +N D G T L W+A G I V E LL+ G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 59
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
ADP + S L A KG+ D +++LL D G TPL +
Sbjct: 60 -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
A +++ +L+++G D + ++G LA +R V
Sbjct: 109 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 150
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 49 DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTA 107
D+E + L++ G ++ + + +A RT Y+++H D+N + G A
Sbjct: 51 DIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109
Query: 108 LHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKW----NA 162
L +A +G I +LLL +G ++ + +GY A + LY + K A
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLL 190
D + DN GR+ + +A KG+ + ++L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQY------IIE 92
N + AA G ++ ++ L+E + + GY AL A+ R Y ++E
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKLLME 166
Query: 93 HGGDVNAADHTGQTALHWSAVRGAIQVAELL 123
+G D + D++G+TA+ ++ +G +++++L
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 90/231 (38%), Gaps = 13/231 (5%)
Query: 41 VYTAAAYGDLEKLQRLV---ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
++ A G+L + RLV + G + + L L A + + + ++ G
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 98 NAADHTGQTALHWSAVRGAIQVAELLLREGA----RVNAADMYGYQTTHVAAQYGQTAFL 153
A D GQTA H + + LL A + A + G HVA +
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQET 131
Query: 154 YHIVSKWNADPDVPD-NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA 212
++ + AD D D GRSPL A ++LLL A Q G + LH A+
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 213 IRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
RG L LV++G L N TP +A ++ R + G A R
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHND--TPLMVA--RSRRVIDILRGKATR 238
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 4/183 (2%)
Query: 36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG 95
+LR A L + RL+ G S D G A A + + +++
Sbjct: 44 NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Query: 96 ----DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA 151
D+ A ++ G TALH + + +LLL GA ++A D+ ++ + A +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWA 211
+ ++ + A+ + G S LH A+ +G +R L+ A ++ TPL A
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 212 AIR 214
R
Sbjct: 224 RSR 226
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQ----DKEGCTPLHWAAIRGNLEACTVL 223
D DG +PLH A +G + L+ L GR+ + TPLH A I +L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDG 271
V AG M D G T A LA + HR R LLD G
Sbjct: 66 VTAGASP--MALDRHGQTAAHLACE--HRSPTCL----RALLDSAAPG 105
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 199 RQDKEGCTPLHWAAIRGNLEACTVLV---QAGKKEDLMVTDNTGLTPAQLA 246
R D++G TPLH A ++GNL A LV Q G +E L + +N TP LA
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLA 53
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 15/203 (7%)
Query: 100 ADHTGQTALHWSAVRG---AIQVAELLLREGARVNAADMYG--YQTTHVAAQYGQTAFLY 154
AD G T LH + V+G A+ L ++G R D+Y QT A +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE-----GCTPLH 209
++ A P D G++ H A C+R LL A G D E G T LH
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALH 121
Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH-RQVAFFLGNARRLLDKR 268
A E +L++ G D V +G +P A + N V L + + +
Sbjct: 122 VAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 269 CDGNSPIGKISKLGLAPALWCVI 291
G+S + S GL P + ++
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLV 203
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DV A D G T LH +A G ++V +LLL GA VNA D +G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A +DK G TPLH AA G+LE +L++AG D+ D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVNAQDK 70
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
G T ++ D + +A L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA N + ++E G DVNA D G+TA S
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 115 GAIQVAELL 123
G +AE+L
Sbjct: 83 GNEDLAEIL 91
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD D +G +PLH AA G + ++LLL A QDK G T + GN +
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
Query: 222 VL 223
+L
Sbjct: 90 IL 91
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK 202
AA GQ + ++ + ADP+ + GR P+ G A LLL A D
Sbjct: 18 TAAARGQVETVRQLL-EAGADPNALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEPNCADP 75
Query: 203 EGCT-PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
T P+H AA G L+ VL +AG + D V D G P LA ++ HR +A +L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L AA + + ++E G D NA + G+ + + G+ QVAELLL GA N AD
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 135 MYGY-QTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ H AA+ G L ++ + A DV D GR P+ A +G D R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLV-VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 77 WAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
WA N + + G DVN G+ LH++A G +++ E LL +GA +NA
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA---- 63
Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
PD +PL A Y+G C++LLL A
Sbjct: 64 ------------------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 197 RGRQDKEGCTPL 208
+ + +G T L
Sbjct: 94 KTVKGPDGLTAL 105
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 171 GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
GR PLH+AA G + + LL A DK TPL A G++ +L+ G
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-- 92
Query: 231 DLMVTDNTGLTPAQLASDK 249
D V GLT + ++
Sbjct: 93 DKTVKGPDGLTALEATDNQ 111
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
GDL++++ V +G V+ G L +AA + ++++ G D+NA D T
Sbjct: 13 GDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 71
Query: 108 LHWSAVRGAIQVAELLLREGA 128
L + G + +LLL +GA
Sbjct: 72 LLSAVYEGHVSCVKLLLSKGA 92
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
AA G D +R+L+ A +DK G TPLH AA G+LE +L++AG D+ D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDK 88
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
G T ++ D + +A L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA + + ++ +G DV A D G T LH +A G ++V +LLL GA V A D +G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 55 RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
R++ G V+ D G L AA N + ++E G DV A D G+TA S
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 115 GAIQVAELL 123
G +AE+L
Sbjct: 101 GNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
AD D +G +PLH AA G + ++LLL A QDK G T + GN +
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Query: 222 VL 223
+L
Sbjct: 108 IL 109
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91 IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
+ HG DVN + T L + ++ E LL+ GA VN AD G H A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
T L + K AD D++GR PL A AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L A N A ++++++G +VN AD G+ LH + + G +A L L+ GA + A D
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 135 MYGYQTTHVAAQ 146
G +A +
Sbjct: 299 SEGRDPLTIAME 310
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEAC 220
A+P+ P++ GR P+ G A LLL A D T P+H AA G L+
Sbjct: 36 ANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL 94
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
VL +AG + D V D G P LA + HR VA +L
Sbjct: 95 VVLHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91 IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
+ HG DVN + T L + ++ E LL+ GA VN AD G H A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
T L + K AD D++GR PL A AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L A N A ++++++G +VN AD G+ LH + + G +A L L+ GA + A D
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 135 MYGYQTTHVAAQ 146
G +A +
Sbjct: 299 SEGRDPLTIAME 310
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91 IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
+ HG DVN + T L + ++ E LL+ GA VN AD G H A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
T L + K AD D++GR PL A AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L A N A ++++++G +VN AD G+ LH + + G +A L L+ GA + A D
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 135 MYGYQTTHVAAQ 146
G +A +
Sbjct: 299 SEGRDPLTIAME 310
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 34/130 (26%)
Query: 77 WAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
WA N + + G DVN G+ LH++A G +++ E LL +GA +NA
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA---- 68
Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
PD +PL A Y+G C++LLL A
Sbjct: 69 ------------------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 197 RGRQDKEGCT 206
+ + +G T
Sbjct: 99 KTVKGPDGLT 108
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 171 GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
GR PLH+AA G + + LL A DK TPL A G++ +L+ G
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-- 97
Query: 231 DLMVTDNTGLT 241
D V GLT
Sbjct: 98 DKTVKGPDGLT 108
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
GDL++++ V +G V+ G L +AA + ++++ G D+NA D T
Sbjct: 18 GDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 108 LHWSAVRGAIQVAELLLREGA 128
L + G + +LLL +GA
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGA 97
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 20/200 (10%)
Query: 75 LQWAALNNRTAAAQYIIEH-GGDV---NAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
L A ++ A +I GD+ N ++ QT LH + + ++AE LL G
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 131 NAADMYGYQTTHVAAQYG---------QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
D G H+A + G Q+ H+ S A + +G + LH A+
Sbjct: 69 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT----NYNGHTCLHLASIH 124
Query: 182 GFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
G+ + LL+ L A Q+ G T LH A N + ++L++ G D+ G
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGY 182
Query: 241 TPAQLASDKNHRQVAFFLGN 260
+P QL + ++ LG
Sbjct: 183 SPYQLTWGRPSTRIQQQLGQ 202
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADH-TGQTALHWSAVRGAIQVAELLLREGAR 129
G+ L A+++ + ++ G DVNA + G+TALH + + LLL+ GA
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 130 VNAADMYGYQ---------TTHVAAQYGQTAF 152
VN GY +T + Q GQ
Sbjct: 174 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 205
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 20/186 (10%)
Query: 75 LQWAALNNRTAAAQYIIEH-GGDV---NAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
L A ++ A +I GD+ N ++ QT LH + + ++AE LL G
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 131 NAADMYGYQTTHVAAQYG---------QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
D G H+A + G Q+ H+ S A + +G + LH A+
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT----NYNGHTCLHLASIH 127
Query: 182 GFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
G+ + LL+ L A Q+ G T LH A N + ++L++ G D+ G
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGY 185
Query: 241 TPAQLA 246
+P QL
Sbjct: 186 SPYQLT 191
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADH-TGQTALHWSAVRGAIQVAELLLREGAR 129
G+ L A+++ + ++ G DVNA + G+TALH + + LLL+ GA
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 130 VNAADMYGYQ---------TTHVAAQYGQ 149
VN GY +T + Q GQ
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEACTV 222
P+ P++ GR P+ G A LLL A D T P+H AA G L+ V
Sbjct: 38 PNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 223 LVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
L +AG + D V D G P LA + HR VA +L
Sbjct: 97 LHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYL 130
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
L AA R + ++E G NA + G+ + + G+ +VAELLL GA N AD
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 135 MYGY-QTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
+ H AA+ G L ++ + A DV D GR P+ A G D R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLV-VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 19/253 (7%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA +G L+ L+ +G +V+ L A L + + +++HG VN
Sbjct: 7 MHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
T L + V G+ LLL+ GA V H AA+ G + +++ +
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIA-Y 123
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLF--LDAYRGR-QDKEGCTPLHWAAIRGNL 217
+ D + +PL+ A C++ LL D +G+ QD +PLH A +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLHAVARTASE 179
Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF-------LGNARRLLDKRCD 270
E +L+ G D + G P +L ++ F L RL ++C
Sbjct: 180 ELACLLMDFGA--DTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCF 237
Query: 271 GNSPIGKISKLGL 283
G KI+KL L
Sbjct: 238 GIQQHHKITKLVL 250
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
+AD + D+ G+S LHWAA D +LL A + Q+ + TPL AA G+ E
Sbjct: 38 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 97
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK 267
VL+ D +TD+ P +A ++ H + RLLD+
Sbjct: 98 KVLLDHFANRD--ITDHMDRLPRDIAQERMHHDIV-------RLLDE 135
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 90 IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
+I DVNA D G++ALHW+A + A +LL+ GA + + +AA+ G
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGS 93
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ + A+ D+ D+ R P A + D +RLL
Sbjct: 94 YETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEA 219
+ D D D +GR+ L + A G C+RLL A +D + G T LH AA E
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASD 248
LV+ G D+ V D GLT +LA +
Sbjct: 126 VEALVELGA--DIEVEDERGLTALELARE 152
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 72 YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
Y W A A + DV+A D G+TAL + A G+ + LL GA ++
Sbjct: 44 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 132 AADMYGYQTT-HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
DM G T H+AA Y + + +V + AD +V D G + L A
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEA 219
+ D D D +GR+ L + A G C+RLL A +D + G T LH AA E
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASD 248
LV+ G D+ V D GLT +LA +
Sbjct: 127 VEALVELGA--DIEVEDERGLTALELARE 153
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 72 YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
Y W A A + DV+A D G+TAL + A G+ + LL GA ++
Sbjct: 45 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 132 AADMYGYQTT-HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
DM G T H+AA Y + + +V + AD +V D G + L A
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELA 151
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AAL Q ++ D + + G TALH + + + L+ GA VN+ D +G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW--AAYKGFADCIRLL 190
+ H AA T +V A +DG + +G+ADC L
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
AA G+LE +Q+ V+ E S+P+ G AL A + ++I G +VN+ D
Sbjct: 28 AALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADM 135
G T LH +A + L++ GA + A +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
AA G+ + V + N DP P+ +G + LH A + L+ A D
Sbjct: 28 AALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 204 GCTPLHWAAIRGNLEACTVLVQAG 227
G TPLH AA + C LVQ G
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHG 110
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG 94
ES+ N ++ AA G+L L+ ++ V+ D G AL WA + +
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP 129
Query: 95 G-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
++N + G TALH +A +G + +LLL +GAR +
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
LH +A RG + L VN D G + A G + + ++ N + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 168 DNDGRSPLHWAAYKGFADCIRLLL 191
+ G + LH AA+KG+AD ++LLL
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLL 160
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
D G + L+WA + G D + L + +Q+K G T LH AA +G + +L+
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 227 GKKEDLMVTDN-------TGLTPAQLASDKNHRQVAFFLGNARRLLD 266
G + DL + T A L K L NA LD
Sbjct: 163 GARTDLRNIEKKLAFDXATNAACASLLKKKQGTDAVRTLSNAEDYLD 209
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLL--REG 127
LG AL AA+ + + + G V A+ G TALH + A A +LL R
Sbjct: 44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
Query: 128 ARVNAADMYGYQ-------TTHVAA----QYGQTAFLYHIVSKWNADPDVPDNDGRSPLH 176
+A+D Y Q T+H A Q W + + DG +PLH
Sbjct: 104 HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163
Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKE-GCTPLHWAAIRGNLEACTVLVQAG 227
A A+ +RLL A + + G TPLH A +L++AG
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 97 VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY-GYQTTHVAAQYGQTAFLYH 155
+ A ++ G T LH + + ++ LL GA +N + G H+A + Q A +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLE 209
Query: 156 IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ K ADP GR+PL A + RLL
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 129 RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDND-GRSPLHWAAYKGFADCI 187
++ A + G+ HVA + + A + ++ AD + P+ GR+PLH A A +
Sbjct: 150 QLEAENYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
LLL A + G TPL A +R N +L G E
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLL--REG 127
LG AL AA+ + + + G V A+ G TALH + A A +LL R
Sbjct: 44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
Query: 128 ARVNAADMYGYQ-------TTHVAA----QYGQTAFLYHIVSKWNADPDVPDNDGRSPLH 176
+A+D Y Q T+H A Q W + + DG +PLH
Sbjct: 104 HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163
Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKE-GCTPLHWAAIRGNLEACTVLVQAG 227
A A+ +RLL A + + G TPLH A +L++AG
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 97 VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY-GYQTTHVAAQYGQTAFLYH 155
+ A ++ G T LH + + ++ LL GA +N + G H+A + Q A +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLE 209
Query: 156 IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
++ K ADP GR+PL A + RLL
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 129 RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDND-GRSPLHWAAYKGFADCI 187
++ A + G+ HVA + + A + ++ AD + P+ GR+PLH A A +
Sbjct: 150 QLEAENYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
LLL A + G TPL A +R N +L G E
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 89 YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA---- 144
+II++GG ++A G TALH++A+ +LLL+ A V + G +A
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 145 ----------AQYGQTAFLYHIVSKW 160
AQ G AF H+ W
Sbjct: 271 HKECEELLEQAQAGTFAFPLHVDYSW 296
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 165 DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
D DG + LH+AA DC++LLL A G ++ G T L A + + E +L
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Query: 225 QA 226
QA
Sbjct: 280 QA 281
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 89 YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA---- 144
+II++GG ++A G TALH++A+ +LLL+ A V + G +A
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 145 ----------AQYGQTAFLYHIVSKW 160
AQ G AF H+ W
Sbjct: 252 HKECEELLEQAQAGTFAFPLHVDYSW 277
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 165 DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
D DG + LH+AA DC++LLL A G ++ G T L A + + E +L
Sbjct: 201 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 260
Query: 225 QA 226
QA
Sbjct: 261 QA 262
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 42/190 (22%)
Query: 41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
++ AA +G L+ L+ +G +V+ L A L + + +++HG VN
Sbjct: 63 MHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
T L + V G+ LLL+ GA V
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQ----------------------------- 152
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC---TPLHWAAIRGNL 217
P++D SP+H AA +G +C+ L+ AY G D + TPL+ A
Sbjct: 153 ------PESDLASPIHEAARRGHVECVNSLI---AYGGNIDHKISHLGTPLYLACENQQR 203
Query: 218 EACTVLVQAG 227
L+++G
Sbjct: 204 ACVKKLLESG 213
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
D++ +H AA KG D +R L+ Q++ GCT LH A G ++ L G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 228 KKEDLMVTDNTGLTPAQLA--SDKNHRQVAFFLGNARR 263
+ L G P LA ++K VA G R
Sbjct: 77 EVHSLW----HGQKPIHLAVXANKTDLVVALVEGAKER 110
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 24/164 (14%)
Query: 78 AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
AA +T + +IE G + G TALH + G + A+ L G V++ +G
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVHSL-WHG 84
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN--------------------DGRSPLHW 177
+ H+A +T + +V P++ G++ LHW
Sbjct: 85 QKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHW 144
Query: 178 AAYKG--FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
G + + I++L+ L A +DK TPL A N EA
Sbjct: 145 CVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREA 188
>pdb|2H3G|X Chain X, Structure Of The Type Iii Pantothenate Kinase (Coax) From
Bacillus Anthracis
Length = 268
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 429 EVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSY----ASTHHIGAL---SFLIADFSLFFG 481
EV A + AV I ++ P+ FG +Y H++G + +I+ +L+
Sbjct: 105 EVGADRIVNAVAGIHLYGSPLIIVDFGTATTYCYINEEKHYMGGVITPGIMISAEALYSR 164
Query: 482 VAVLTAVQASQISRNI---TTNEMANALRYNYL---RGAGGRFRNPYDHGCKRNCSDFLI 535
A L ++ ++ S + T + M + + Y Y+ G R + K + L
Sbjct: 165 AAKLPRIEITKPSSVVGKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGLA 224
Query: 536 NGFNED---VECVEDSAGTEGIGMMHMSRNSNLQNGDGH 571
+E+ ++ V+ +G+ M++ RN+NLQ+ G
Sbjct: 225 KLISEESNVIDVVDPFLTLKGLYMLY-ERNANLQHEKGE 262
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 174 PLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
PLH AA +++LLF + D +G T L++A GN + + V+
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 35/81 (43%)
Query: 66 EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLR 125
EPD + + +++++ G+++ G TALH+ + + +LLLR
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226
Query: 126 EGARVNAADMYGYQTTHVAAQ 146
A + A+ G +A +
Sbjct: 227 GKASIEIANESGETPLDIAKR 247
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 400 VEQFDHHCPWVSNCIGK-KNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWM 458
VE++ H VS IG K K++ L A V+GA P+A +
Sbjct: 299 VEKYSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGA-------PKPMAMNIIETLE 351
Query: 459 SYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISR 495
Y + GA+ F+ AD + F +A+ TA ++ R
Sbjct: 352 EYKRGPYAGAVGFISADGNAEFAIAIRTAFLNKELLR 388
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW 77
D+ A+Y DL+ +Q L E E + + Y LQW
Sbjct: 50 DIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQW 87
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW 77
D+ A+Y DL+ +Q L E E + + Y LQW
Sbjct: 56 DIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQW 93
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW 77
D+ A+Y DL+ +Q L E E + + Y LQW
Sbjct: 56 DIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQW 93
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 201 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTG 239
D+ G TPLHW NLE LV+ G + DN G
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMG 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,228,764
Number of Sequences: 62578
Number of extensions: 749222
Number of successful extensions: 2343
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1490
Number of HSP's gapped (non-prelim): 405
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)