Query 006704
Match_columns 634
No_of_seqs 452 out of 4054
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 9.3E-36 3.2E-40 295.8 30.9 230 336-586 12-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 2.4E-33 8.2E-38 280.0 29.6 230 332-588 28-259 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 100.0 6.8E-32 2.3E-36 283.7 22.8 226 340-588 117-376 (388)
4 3jz3_A Sensor protein QSEC; he 100.0 9.8E-33 3.3E-37 267.3 13.4 217 344-587 2-219 (222)
5 3d36_A Sporulation kinase B; G 100.0 5.3E-31 1.8E-35 259.0 20.7 217 341-589 11-229 (244)
6 2btz_A Pyruvate dehydrogenase 100.0 1E-30 3.5E-35 275.2 22.8 220 346-588 97-353 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 4E-30 1.4E-34 270.5 25.9 218 346-587 97-352 (394)
8 3a0r_A Sensor protein; four he 100.0 2.2E-30 7.6E-35 268.8 22.6 214 342-586 130-346 (349)
9 2q8g_A [pyruvate dehydrogenase 100.0 4.5E-30 1.5E-34 271.3 24.6 220 344-587 106-365 (407)
10 4fpp_A Phosphotransferase; fou 100.0 2.4E-29 8.3E-34 247.1 20.9 195 347-583 49-246 (247)
11 1y8o_A [pyruvate dehydrogenase 100.0 3.7E-29 1.3E-33 265.0 23.3 220 344-587 118-376 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 2.2E-27 7.4E-32 247.5 15.3 244 343-629 9-304 (379)
13 3ehh_A Sensor kinase (YOCF pro 99.9 3.9E-25 1.3E-29 213.2 21.2 189 342-585 26-216 (218)
14 1id0_A PHOQ histidine kinase; 99.9 1.3E-23 4.4E-28 190.2 19.4 146 415-587 2-147 (152)
15 1ysr_A Sensor-type histidine k 99.9 3.8E-23 1.3E-27 186.7 17.8 146 413-585 4-149 (150)
16 1bxd_A ENVZ(290-450), protein 99.9 7.3E-23 2.5E-27 187.2 17.9 150 411-588 4-153 (161)
17 3sl2_A Sensor histidine kinase 99.9 1.5E-22 5.1E-27 188.2 19.0 153 416-589 2-156 (177)
18 3a0y_A Sensor protein; ATP-LID 99.9 2.5E-22 8.7E-27 181.6 18.7 145 413-585 2-148 (152)
19 1r62_A Nitrogen regulation pro 99.9 2E-22 6.7E-27 184.0 14.9 156 411-585 2-159 (160)
20 1i58_A Chemotaxis protein CHEA 99.9 9E-23 3.1E-27 191.9 11.3 150 415-585 3-189 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.8 6.6E-20 2.2E-24 160.5 14.5 125 417-585 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 8.4E-19 2.9E-23 153.6 14.6 125 415-585 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.8 6.3E-18 2.1E-22 146.9 14.6 122 418-585 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.7 3.1E-16 1.1E-20 140.2 11.4 104 455-588 35-142 (145)
25 1mu5_A Type II DNA topoisomera 99.6 3.2E-15 1.1E-19 157.8 12.5 117 453-587 26-150 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.6 2.4E-15 8.3E-20 160.3 11.3 114 456-587 28-149 (530)
27 3p01_A Two-component response 99.5 3.3E-13 1.1E-17 125.6 15.2 172 125-312 11-182 (184)
28 2q2e_B Type 2 DNA topoisomeras 99.4 2.7E-13 9.1E-18 146.5 8.7 115 453-587 31-154 (621)
29 3e0y_A Conserved domain protei 99.4 1.1E-12 3.9E-17 120.9 11.3 170 134-317 5-174 (181)
30 3trc_A Phosphoenolpyruvate-pro 99.4 7.6E-12 2.6E-16 114.3 15.3 164 140-317 4-169 (171)
31 2e4s_A CAMP and CAMP-inhibited 99.3 6E-12 2.1E-16 117.2 12.5 171 135-319 4-186 (189)
32 3k2n_A Sigma-54-dependent tran 99.3 1.1E-11 3.9E-16 114.0 13.0 165 140-318 2-175 (177)
33 2zmf_A CAMP and CAMP-inhibited 99.3 1.4E-11 4.7E-16 114.6 13.4 165 140-318 9-185 (189)
34 4glq_A Methyl-accepting chemot 99.3 3.5E-11 1.2E-15 110.1 12.6 154 149-316 2-161 (171)
35 3ci6_A Phosphoenolpyruvate-pro 99.3 9.3E-11 3.2E-15 106.5 15.0 164 138-315 4-169 (171)
36 3o5y_A Sensor protein; GAF dom 99.2 3.3E-11 1.1E-15 109.5 10.8 157 155-325 2-159 (165)
37 3oov_A Methyl-accepting chemot 99.2 3.7E-10 1.3E-14 102.7 14.8 158 144-315 2-168 (169)
38 2lb5_A Sensor histidine kinase 99.1 2E-10 6.7E-15 109.0 10.4 168 134-315 6-203 (208)
39 1ykd_A Adenylate cyclase; GAF 99.1 1.8E-09 6.2E-14 113.3 17.0 171 136-319 191-386 (398)
40 2vjw_A GAF-B, GAF family prote 99.1 1.1E-09 3.9E-14 97.6 12.9 134 158-316 1-141 (149)
41 2qyb_A Membrane protein, putat 99.1 8E-10 2.7E-14 102.0 11.5 160 144-316 3-165 (181)
42 3dba_A CONE CGMP-specific 3',5 99.0 6E-10 2E-14 103.0 9.4 154 140-307 3-171 (180)
43 3ibj_A CGMP-dependent 3',5'-cy 99.0 4.8E-09 1.6E-13 118.0 17.8 171 139-324 176-352 (691)
44 1mc0_A 3',5'-cyclic nucleotide 99.0 7.6E-09 2.6E-13 107.2 17.8 169 137-318 174-346 (368)
45 1mc0_A 3',5'-cyclic nucleotide 99.0 9.2E-09 3.1E-13 106.5 18.0 162 143-318 13-175 (368)
46 2w3g_A DOSS, two component sen 98.9 3.8E-09 1.3E-13 94.0 10.4 146 155-316 3-152 (153)
47 3hcy_A Putative two-component 98.9 2.5E-09 8.5E-14 95.4 8.9 143 156-314 1-144 (151)
48 3mmh_A FRMSR, methionine-R-sul 98.9 5.3E-08 1.8E-12 87.9 16.7 146 143-308 16-161 (167)
49 1ykd_A Adenylate cyclase; GAF 98.9 7.1E-08 2.4E-12 101.0 20.3 166 140-319 5-194 (398)
50 3cit_A Sensor histidine kinase 98.9 4.8E-08 1.6E-12 85.6 15.4 149 136-319 7-157 (160)
51 3ibj_A CGMP-dependent 3',5'-cy 98.9 3.3E-08 1.1E-12 111.2 17.2 163 140-317 11-174 (691)
52 1vhm_A Protein YEBR; structura 98.8 1.4E-07 4.6E-12 87.5 14.9 150 140-311 25-175 (195)
53 2k2n_A Sensor protein, SYB-CPH 98.7 1.5E-07 5.3E-12 85.9 12.4 141 159-313 1-171 (172)
54 3nhq_A Bacteriophytochrome; ph 98.6 1.1E-06 3.6E-11 93.0 19.1 161 141-315 122-311 (505)
55 2ool_A Sensor protein; bacteri 98.6 3.8E-07 1.3E-11 91.4 14.4 161 140-314 143-332 (337)
56 4e04_A Bacteriophytochrome (li 98.6 5.6E-07 1.9E-11 89.2 14.8 156 141-310 131-315 (327)
57 3zq5_A Phytochrome-like protei 98.6 1.7E-06 5.8E-11 91.6 19.0 161 141-315 135-324 (520)
58 3s7o_A Bacteriophytochrome; bi 98.6 6.5E-07 2.2E-11 88.9 14.1 156 141-310 149-333 (343)
59 1f5m_A GAF; CGMP binding, sign 98.5 2E-06 6.9E-11 78.8 14.7 146 143-307 26-177 (180)
60 3rfb_A Putative uncharacterize 98.5 1.7E-06 5.9E-11 77.7 13.3 142 144-307 18-160 (171)
61 3ksh_A Putative uncharacterize 98.4 2.8E-06 9.7E-11 75.5 13.4 141 145-307 18-159 (160)
62 3bjc_A CGMP-specific 3',5'-cyc 98.4 3.2E-08 1.1E-12 114.1 0.0 171 137-320 146-330 (878)
63 3ke6_A Protein RV1364C/MT1410; 98.4 5.7E-07 1.9E-11 93.8 9.0 90 456-586 294-387 (399)
64 1b63_A MUTL; DNA mismatch repa 98.4 1.1E-06 3.8E-11 88.7 10.6 85 459-570 24-115 (333)
65 1h7s_A PMS1 protein homolog 2; 98.4 7.5E-07 2.6E-11 90.8 8.7 85 459-570 34-125 (365)
66 3na3_A DNA mismatch repair pro 98.3 1.3E-06 4.6E-11 87.7 9.7 97 459-582 28-131 (348)
67 3mm4_A Histidine kinase homolo 98.3 1.6E-07 5.6E-12 88.5 2.5 63 558-629 16-78 (206)
68 3bjc_A CGMP-specific 3',5'-cyc 98.2 1.3E-07 4.4E-12 109.0 0.0 175 135-322 325-521 (878)
69 1ixm_A SPO0B, protein (sporula 98.2 1.7E-05 5.7E-10 73.0 12.6 144 345-536 22-171 (192)
70 1kij_A DNA gyrase subunit B; t 98.2 1.4E-06 4.9E-11 89.6 5.7 84 454-561 31-127 (390)
71 3h4l_A DNA mismatch repair pro 98.1 2.6E-06 8.9E-11 86.4 6.8 85 459-570 25-116 (367)
72 3eea_A GAF domain/HD domain pr 98.1 9.4E-06 3.2E-10 67.1 8.6 150 151-315 6-162 (162)
73 4eho_A Bacteriophytochrome, PA 98.1 4.1E-05 1.4E-09 84.7 16.4 158 144-315 132-318 (635)
74 3zcc_A HAMP, osmolarity sensor 98.1 2.1E-05 7.3E-10 65.6 10.5 65 333-402 49-113 (114)
75 2wer_A ATP-dependent molecular 97.7 8.7E-06 3E-10 77.1 2.0 54 462-535 29-97 (220)
76 3zrx_A AF1503 protein, osmolar 97.5 0.00052 1.8E-08 56.9 9.3 61 338-403 54-114 (115)
77 1yc1_A HSP 86, heat shock prot 97.4 8.1E-05 2.8E-09 71.9 4.1 85 462-570 71-181 (264)
78 2ior_A Chaperone protein HTPG; 97.4 2.4E-05 8.1E-10 74.7 0.1 85 462-570 50-162 (235)
79 1qy5_A Endoplasmin; GRP94, NEC 97.3 2.1E-05 7E-10 76.2 -1.3 51 463-533 32-97 (269)
80 1s16_A Topoisomerase IV subuni 97.2 0.00049 1.7E-08 70.5 7.1 48 512-559 64-124 (390)
81 1ei1_A DNA gyrase B, GYRB; ATP 97.0 0.0011 3.8E-08 67.9 7.5 80 459-559 34-127 (391)
82 3t0h_A Heat shock protein HSP 97.0 0.00013 4.6E-09 68.7 0.3 85 462-570 35-145 (228)
83 2gqp_A Endoplasmin; GRP94, HSP 96.9 0.00025 8.4E-09 67.6 1.4 85 462-570 35-150 (236)
84 3peh_A Endoplasmin homolog; st 96.8 0.00046 1.6E-08 66.5 2.3 18 512-529 94-111 (281)
85 3fv5_A DNA topoisomerase 4 sub 96.5 0.0038 1.3E-07 57.6 6.8 75 461-558 19-109 (201)
86 1y4s_A Chaperone protein HTPG; 96.5 0.0024 8.1E-08 68.2 6.1 53 462-534 30-97 (559)
87 3cwv_A DNA gyrase, B subunit, 96.5 0.0026 8.8E-08 64.6 5.9 78 456-558 27-109 (369)
88 3o0i_A HSP90AA1 protein; HSP90 96.5 0.00027 9.1E-09 67.4 -1.3 50 462-531 63-127 (256)
89 2cg9_A ATP-dependent molecular 96.4 0.0017 5.9E-08 70.5 4.3 101 463-583 30-178 (677)
90 3nmq_A Heat shock protein HSP 96.2 0.00069 2.3E-08 63.8 -0.6 18 511-528 86-103 (239)
91 4duh_A DNA gyrase subunit B; s 95.8 0.015 5.2E-07 54.3 6.9 79 458-559 34-128 (220)
92 2ioq_A Chaperone protein HTPG; 95.7 0.0027 9.3E-08 68.7 1.7 52 462-533 30-96 (624)
93 2o1u_A Endoplasmin; GRP94, HSP 95.7 0.003 1E-07 68.6 1.6 51 462-532 48-113 (666)
94 3ttz_A DNA gyrase subunit B; p 95.5 0.015 5E-07 53.5 5.5 48 456-526 28-78 (198)
95 1zxm_A TOPO IIA ATPase, DNA to 95.4 0.047 1.6E-06 55.9 9.3 80 457-558 50-146 (400)
96 4emv_A DNA topoisomerase IV, B 95.3 0.023 8E-07 53.1 6.2 83 456-559 37-132 (226)
97 4eu0_A PELD; C-DI-GMP, signali 94.7 0.17 5.9E-06 49.3 10.6 131 160-313 25-156 (298)
98 1pvg_A DNA topoisomerase II; G 94.0 0.15 5.2E-06 52.3 8.9 101 458-584 63-180 (418)
99 3ied_A Heat shock protein; HSP 94.0 0.013 4.6E-07 55.1 0.9 20 512-531 131-150 (272)
100 3lnu_A Topoisomerase IV subuni 93.4 0.12 4.2E-06 52.7 6.9 79 461-560 52-144 (408)
101 3e98_A GAF domain of unknown f 91.8 2.2 7.5E-05 40.5 13.0 158 123-308 78-242 (252)
102 4gfh_A DNA topoisomerase 2; to 88.2 0.93 3.2E-05 52.8 8.3 80 458-559 58-154 (1177)
103 4a2l_A BT_4663, two-component 84.4 0.41 1.4E-05 54.2 2.7 73 218-292 694-773 (795)
104 3ott_A Two-component system se 84.2 0.43 1.5E-05 53.7 2.8 73 219-293 660-740 (758)
105 3hzh_A Chemotaxis response reg 76.8 1 3.5E-05 39.0 2.0 19 611-629 35-53 (157)
106 3v9f_A Two-component system se 75.4 0.6 2.1E-05 52.7 0.2 69 222-292 691-767 (781)
107 3nhq_A Bacteriophytochrome; ph 60.9 8.1 0.00028 40.6 5.0 50 136-185 312-361 (505)
108 2ayx_A Sensor kinase protein R 59.8 8.3 0.00028 36.4 4.6 21 610-630 127-147 (254)
109 3n0r_A Response regulator; sig 43.6 8.9 0.0003 37.1 1.9 19 612-630 160-178 (286)
110 3zq5_A Phytochrome-like protei 36.0 66 0.0023 33.8 7.2 49 137-185 326-374 (520)
111 2lq0_A De novo designed antifr 35.7 26 0.0009 18.9 2.0 14 57-70 8-21 (26)
112 3lmm_A Uncharacterized protein 34.6 1E+02 0.0035 32.9 8.6 97 461-586 298-409 (583)
113 3szt_A QCSR, quorum-sensing co 32.5 2.9E+02 0.0099 25.2 12.1 108 148-256 7-120 (237)
114 2w1r_A Spovt, stage V sporulat 30.2 1.8E+02 0.0061 23.6 7.6 114 164-304 5-118 (123)
115 3ehh_A Sensor kinase (YOCF pro 29.7 2.9E+02 0.0098 24.2 10.8 24 420-443 132-155 (218)
116 3rlb_A THIT; S-component, ECF 29.5 2.5E+02 0.0086 24.9 8.9 93 19-114 88-188 (192)
117 3luf_A Two-component system re 27.7 24 0.00082 33.2 2.0 19 611-629 123-141 (259)
118 2ks1_B Epidermal growth factor 24.9 1.1E+02 0.0036 20.0 4.0 19 30-48 21-40 (44)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=9.3e-36 Score=295.77 Aligned_cols=230 Identities=29% Similarity=0.472 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 006704 336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL 412 (634)
Q Consensus 336 ~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l 412 (634)
++++..+.+.+|++.++|||||||++|.++++++... ...++.+++++.+.+.++++..++++++++++++.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 3445556678999999999999999999999998753 2344567899999999999999999999999999888888
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeec
Q 006704 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK 488 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~ 488 (634)
..+++++.++++++...+...+..+++.+.+..+...+..+.+|+..|.|++.||+.||+||++.+ .+.+.+...+
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~ 171 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence 889999999999999999999999999998887655555677899999999999999999999753 2445444333
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCC-CCCccccHHHHHHHHHHhCCEEEE
Q 006704 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIWL 567 (634)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~i~v 567 (634)
+ .+.|.|.|||+||+++..+++|+||++.+..... ..|+||||++||++++.|||+|++
T Consensus 172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred C--------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence 2 3899999999999999999999999998765332 359999999999999999999999
Q ss_pred EecCCCCceEEEEEEEecC
Q 006704 568 DSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 568 ~s~~~g~Gt~f~i~lp~~~ 586 (634)
+|. +|+||+|+|+||...
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC
T ss_pred Eec-CCCCcEEEEEeeCCC
Confidence 999 899999999999753
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=2.4e-33 Score=280.00 Aligned_cols=230 Identities=27% Similarity=0.374 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 006704 332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
+..+++++..+.+++|++.++||+||||+.|.++++++.+. ..+++.+++++.+.+.++++..++++++++++...+..
T Consensus 28 ~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~ 107 (268)
T 4ew8_A 28 DRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEM 107 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 34444555566678999999999999999999999999864 46778889999999999999999999999999998888
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecC
Q 006704 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKP 489 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~ 489 (634)
.+..+++++.++++++...+...+..+++.+.++.+.+.+. +.+|+..|.+|+.||+.||+||++. +.+.+.+...++
T Consensus 108 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~ 186 (268)
T 4ew8_A 108 ALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALG 186 (268)
T ss_dssp CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEECSS
T ss_pred ceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCce-EecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEecCC
Confidence 88889999999999999999999999999999998776654 7789999999999999999999986 566666654433
Q ss_pred CCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEe
Q 006704 490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDS 569 (634)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 569 (634)
.+.|.|.|||+||+++..+++|+||++++. .|+|+||++|+++++.|||+|++++
T Consensus 187 --------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~i~i~s 241 (268)
T 4ew8_A 187 --------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKALVELHGGWVALES 241 (268)
T ss_dssp --------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred --------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHHcCCEEEEEe
Confidence 499999999999999999999999997553 4889999999999999999999999
Q ss_pred cCCCCceEEEEEEEecCCC
Q 006704 570 EGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 570 ~~~g~Gt~f~i~lp~~~~~ 588 (634)
. +++||+|++.||....+
T Consensus 242 ~-~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 242 E-PGNGSTFTCHLPETQQP 259 (268)
T ss_dssp C-TTSCEEEEEEEECCC--
T ss_pred c-CCCCEEEEEEecCCCCC
Confidence 8 89999999999986544
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=6.8e-32 Score=283.72 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeee
Q 006704 340 AIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (634)
Q Consensus 340 ~~~~~~~l~~~isHelr~pL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~ 418 (634)
.++.+.+|++.++||+||||+.|. ++.+++.....+++.+++++.+.++..++..++++++++++.+.+...+..+.++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~ 196 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS 196 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCC
Confidence 355678999999999999999998 5555554444467788999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHHHHHHhhhcC---CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC---------cEEEEEEe
Q 006704 419 LQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIASV 486 (634)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g---------~i~i~~~~ 486 (634)
+.+++++++..++..+..+ .+.+.+..+.+ ..+.+|+..|.+|+.|||.||+||+..+ .|.+.+..
T Consensus 197 l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~ 274 (388)
T 1gkz_A 197 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN 274 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe
Confidence 9999999999999988877 34455544433 3366799999999999999999999765 56666654
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC---------------------CCC
Q 006704 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QTP 545 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~---------------------~~~ 545 (634)
.++ ++.|.|+|+|+||+++.++++|++||+++.... ...
T Consensus 275 ~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (388)
T 1gkz_A 275 NDV--------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMH 334 (388)
T ss_dssp CSS--------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCS
T ss_pred CCC--------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcC
Confidence 332 499999999999999999999999999876431 125
Q ss_pred CccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006704 546 RAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 546 g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
|+|+||+|||.+++.|||+|+++|. +|.||+|+|+||.....
T Consensus 335 G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 335 GFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGR 376 (388)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSC
T ss_pred CccCCHHHHHHHHHHhCCEEEEEec-CCCcEEEEEEecCCCCC
Confidence 9999999999999999999999999 89999999999976443
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.98 E-value=9.8e-33 Score=267.26 Aligned_cols=217 Identities=22% Similarity=0.284 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006704 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
+++|++.++||+||||++|.++++++..... +++.+++++.+.++++++..++++++++++.+.+......+.+++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 4579999999999999999999998876533 334467788899999999999999999999988887888899999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCc
Q 006704 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 502 (634)
+++++..+...+..+++.+.++.++..+ .+.+|+..+.+|+.||+.||+||++.+.. +.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~-i~i~~~~~------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSV-VDVTLNAD------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCE-EEEEECSS-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCe-EEEEEccC-------------
Confidence 9999999999999999999998877644 46789999999999999999999976543 22222211
Q ss_pred cCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006704 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 503 ~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
.|.|.|||+||+++..+++|+||++++.. ...|+|+||++||++++.|||+|+++|. +++||+|++.+
T Consensus 147 ---------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~~ 214 (222)
T 3jz3_A 147 ---------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVSW 214 (222)
T ss_dssp ---------EEEEECSCC----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEEC
T ss_pred ---------eEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHHHHHHHcCCEEEEEcC-CCCcEEEEEee
Confidence 28899999999999999999999986533 2358999999999999999999999999 99999999999
Q ss_pred EecCC
Q 006704 583 KLGIC 587 (634)
Q Consensus 583 p~~~~ 587 (634)
|....
T Consensus 215 P~~~~ 219 (222)
T 3jz3_A 215 LEHHH 219 (222)
T ss_dssp CCC--
T ss_pred cCCCC
Confidence 96544
No 5
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=5.3e-31 Score=258.98 Aligned_cols=217 Identities=21% Similarity=0.433 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006704 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 341 ~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
.+.+++|++.++||+||||+.|.++++++.+... +++.+++++.+.+.++++..++++++++++.... ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 3456789999999999999999999999987654 4456789999999999999999999998886543 4568999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCC
Q 006704 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~~~~~ 498 (634)
..+++++...+...+..+++.+.+..++ ..+.+|+..+.+++.||+.||++|++. +.+.+.+...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999988888888887643 347789999999999999999999954 556666655433
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006704 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|.|.|+|+||+++..+++|+||++++.. .|.|+||++||++++.|||+|++++. +++||+|
T Consensus 155 -----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~ 218 (244)
T 3d36_A 155 -----------RVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTV 218 (244)
T ss_dssp -----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEE
T ss_pred -----------EEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHHHHHHHHHcCCEEEEEec-CCCcEEE
Confidence 4999999999999999999999999987632 48899999999999999999999998 8999999
Q ss_pred EEEEEecCCCC
Q 006704 579 TFLVKLGICNN 589 (634)
Q Consensus 579 ~i~lp~~~~~~ 589 (634)
+|.||+...+.
T Consensus 219 ~i~lP~~~~~~ 229 (244)
T 3d36_A 219 SIYLPLASSPS 229 (244)
T ss_dssp EEEEECCC---
T ss_pred EEEecCCCCCC
Confidence 99999875443
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.97 E-value=1e-30 Score=275.20 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhC-CCcccc
Q 006704 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (634)
Q Consensus 346 ~l~~~isHelr~-----pL~~I~~~~~~l~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~ll~~~~~~~-~~~~l~ 413 (634)
++++.++||||| ||+.|.++++++.....++. .+++++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 467778899999 99999999999876544433 344677 488888999 9999999999876 455666
Q ss_pred c----eeeeHHHHHHHHHHHHHHhhhc-----CCceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---
Q 006704 414 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (634)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~--- 479 (634)
. +++++.++++++++.++..+.. +++.+.+.. .+..+..+.+|+..|.+|+.|||.||+||++.++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8999999999999999998876 888888754 1233445788999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCC------CCCCCCcc
Q 006704 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 548 (634)
Q Consensus 480 -----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~g~G 548 (634)
|.+.+...++ .+.|.|+|+|+||+++.++++|++||+++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 7776654433 4999999999999999999999999998764 22235999
Q ss_pred ccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006704 549 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 549 lGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
+||+|||.+++.|||+|+++|. +|+||+|+|.||.....
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALSTD 353 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTTT
T ss_pred CCHHHHHHHHHHhCCEEEEEec-CCCceEEEEEecCCCCC
Confidence 9999999999999999999999 89999999999986543
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=4e-30 Score=270.53 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=180.9
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHhhCCCcccc
Q 006704 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (634)
Q Consensus 346 ~l~~~isHelr~-----pL~~I~~~~~~l~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~ll~-~~~~~~~~~~l~ 413 (634)
+++..++||||| ||+.|.++++++.... ..++.+++++ .+.+.+.+| +++++++ +++. .+.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356677899999 8999999999776432 3556678888 689999999 9999998 6665 5555666
Q ss_pred c----eeeeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---
Q 006704 414 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (634)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~--- 479 (634)
. +++++.++++++++.++..+..+ ++.+.+.. .+..+..+.+|+..|.+|+.|||.||+||+..++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 79999999999999999998877 88888754 2334456788999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCC------CC-CCCCc
Q 006704 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 547 (634)
Q Consensus 480 -----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~-~~~g~ 547 (634)
|.+.+...++ .+.|.|+|+|+||+++.++++|++||+++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCc
Confidence 7776655433 4999999999999999999999999998764 22 23599
Q ss_pred cccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006704 548 GLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 548 GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
|+||+|||.+++.|||+|+++|. +|.||+|+|.||....
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2e0a_A 314 GYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSS 352 (394)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred ccCHHHHHHHHHHhCCEEEEEec-CCccEEEEEEeCCCCC
Confidence 99999999999999999999999 8999999999998653
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=2.2e-30 Score=268.78 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHH
Q 006704 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 420 (634)
+.+++|++.++||+||||+.|.++++++.+... +++..++++.+.+.++++..++++++++++.. ..+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCHH
Confidence 346789999999999999999999999987533 34457889999999999999999999999842 34567799999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEeecCCCCCCCCCCC
Q 006704 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (634)
++++++...+...+..+++.+.++.++..+ .+.+|+..|.+|+.||+.||+||++ .|.+.+.+...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999988899999998876544 4778999999999999999999995 5777777665433
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHH-HhCCEEEEEecCCCCceEE
Q 006704 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|||+||+++..+++|+||++++. .|+|+||++||++++ .|||.+++++. + +||+|
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~~v~~~~gg~i~~~~~-~-~Gt~f 338 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR-E-NGVVF 338 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHHHHHHTTCSBCCEEEC-S-SEEEE
T ss_pred ----------EEEEEEEECCCCCChHHHhhcCCCCccCCC-----CCccchHHHHHHHHHHhCCCEEEEEeC-C-CcEEE
Confidence 399999999999999999999999998763 488999999999998 89999999997 4 59999
Q ss_pred EEEEEecC
Q 006704 579 TFLVKLGI 586 (634)
Q Consensus 579 ~i~lp~~~ 586 (634)
+|+||...
T Consensus 339 ~i~lP~~~ 346 (349)
T 3a0r_A 339 IFEIPKTP 346 (349)
T ss_dssp EEEEESCT
T ss_pred EEEecCCC
Confidence 99999753
No 9
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.97 E-value=4.5e-30 Score=271.35 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHhhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhC----C
Q 006704 344 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 408 (634)
Q Consensus 344 ~~~l~~~isHelr~-----pL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~ll~~~~~~~----~ 408 (634)
++.|.+.+ ||||| ||+.|.++++++.....+ ++.+++++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 34666665 99999 999999999977754332 334667777 77778888 9999999999864 2
Q ss_pred ---CccccceeeeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 006704 409 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (634)
Q Consensus 409 ---~~~l~~~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g 478 (634)
...+..+.+++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+..|.+|+.|||.||+||+..+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567789999999999999999988877 88888776 123344578899999999999999999999764
Q ss_pred --------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCC-------CC
Q 006704 479 --------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSS-------CQ 543 (634)
Q Consensus 479 --------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-------~~ 543 (634)
.|.+.+...++ .+.|.|+|+|+||+++.++++|++||+++... ..
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCC--------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 47776654333 49999999999999999999999999987651 22
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006704 544 TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 544 ~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
..|+|+||+|||.+++.|||+|+++|. +|.||+|+|+||....
T Consensus 323 ~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~ 365 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALST 365 (407)
T ss_dssp SSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred CCCcCCCHHHHHHHHHHhCCEEEEEEc-CCCceEEEEEECCCCC
Confidence 359999999999999999999999999 8999999999998653
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=2.4e-29 Score=247.06 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=149.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHHHH
Q 006704 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
+++.|||||||||++|.+++++|.+...++..+++++.|.+.++++..+++ +.++..+. .....++++.++..
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~----~~r~~~~~-~~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQ----FTRVAFGA-SASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHTTC-CSSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc-ccccccccHHHHHH--
Confidence 778899999999999999999999887777778889999999888877664 44443222 23445677766543
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCC
Q 006704 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVST 505 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (634)
.++..++.+++.+..+.++. . .+..+.|++.||+.||+||++.| .+.+.+...++
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~----~--~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~---------------- 177 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQ----A--MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG---------------- 177 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSC----E--ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT----------------
T ss_pred --HHHHHHHhhhhhccccccch----h--hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC----------------
Confidence 34445556777777654332 1 34578899999999999999864 56666655443
Q ss_pred CCceEEEEEEEEcCCC--CCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006704 506 DGHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 506 ~~~~~l~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp 583 (634)
.+.|.|+|+|+| ++++..+++|++|++++ ..|+||||+|||++++.|||+|+++|. +| |++|+++||
T Consensus 178 ----~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-----~~G~GLGLai~~~iv~~hGG~i~v~s~-~~-G~~f~v~LP 246 (247)
T 4fpp_A 178 ----RFSIIADAKGPRARLRPEVLAGLKGEPLAEG-----LGGPWVQAAYLNALVRAAGGQIAVEIG-ED-RASIAAWVP 246 (247)
T ss_dssp ----EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----CHHHHHHHHHHHHHHHHTTCEEEEEEE-TT-EEEEEEEEE
T ss_pred ----EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----CCCccHHHHHHHHHHHHcCCEEEEEEc-CC-EEEEEEEec
Confidence 389999999988 55666677777777644 248999999999999999999999998 54 999999999
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=3.7e-29 Score=265.00 Aligned_cols=220 Identities=17% Similarity=0.215 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-CCCcc
Q 006704 344 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDL----TPEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 411 (634)
Q Consensus 344 ~~~l~~~isHelr~pL~-----~I~~~~~~l~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~ll~~~~~~-~~~~~ 411 (634)
+.+|+. ++|||||||+ .|.++++++..... .++.+++++.+... +.++ ++++++.+.+.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345665 5599999999 77999997765322 33456677776555 7777 999987666543 23222
Q ss_pred c----cceeeeHHHHHHHHHHHHHHhhhc-----CCceEEEEeC--CCCCceEEccHHHHHHHHHHHHHHHhhcCCCC--
Q 006704 412 L----DNGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-- 478 (634)
Q Consensus 412 l----~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g-- 478 (634)
. ..+++++.++++++++.++..+.. +++.+.+... +..+..+.+|+..|.||+.||+.||+||+..+
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 337999999999999999988865 7777776442 23345578899999999999999999999764
Q ss_pred -------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCC------C-CCC
Q 006704 479 -------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQT 544 (634)
Q Consensus 479 -------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~-~~~ 544 (634)
.|.+.+...++ .+.|.|+|+|+||+++.++++|+|||+++.. . ...
T Consensus 275 ~~~~~~~~I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE--------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeCCC--------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 46666654332 4999999999999999999999999998764 2 123
Q ss_pred CCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006704 545 PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 545 ~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~ 587 (634)
.|+||||+|||.+++.|||+|+++|. +|.||+|+|.||....
T Consensus 335 ~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~ 376 (419)
T 1y8o_A 335 AGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSS 376 (419)
T ss_dssp --CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGG
T ss_pred CCeecCHHHHHHHHHHhCCEEEEEec-CCCCEEEEEEecCCCC
Confidence 59999999999999999999999999 8999999999998653
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.95 E-value=2.2e-27 Score=247.50 Aligned_cols=244 Identities=15% Similarity=0.191 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHH
Q 006704 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
.+.+++.+++||+++|++.+.+..+.+.. +.+.+.++++..+++++++++. ....+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 35678999999999999999877655432 4678888999999999998864 2236778899
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHH---HHHHHHHHHHHHHhhcC-------------CCCcEEEEEEe
Q 006704 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEK---RLMQTILNIVGNAVKFT-------------KEGYVSIIASV 486 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~---~l~qvl~nLl~NAik~~-------------~~g~i~i~~~~ 486 (634)
++.+...++..+...+..+++.++.... ..|+. ++.+++.||+.||+||+ +.|.+.+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCe---eecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 9999999998888878888887765533 23665 55555999999999997 34666666655
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhhcccccCCCCC
Q 006704 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQSRGSSC 542 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~ 542 (634)
.++ ++.|+|+|||+||+++.+ +++|+|||+++...+
T Consensus 147 ~~~--------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~ 206 (379)
T 1b3q_A 147 EGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS 206 (379)
T ss_dssp ETT--------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------
T ss_pred eCC--------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC
Confidence 433 499999999999999976 889999999887766
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC------CCCCcCC--c---cCC-CCCCCCCC
Q 006704 543 QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG------SPIHPVA--L---KGR-ASHGSADL 610 (634)
Q Consensus 543 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~~------~~~~~~~--~---~~~-~~~~~~~~ 610 (634)
..+|+|+||++||++++.|||+|+++|. +|+||+|+++||+....... ......| . ... .+......
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~-~g~Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~ 285 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESE-KDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRV 285 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEE
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEc-CCCCeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCHHHeEEe
Confidence 6679999999999999999999999999 99999999999987542110 0000000 0 000 00111223
Q ss_pred CCCceEEecCchhhhhhhh
Q 006704 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
.+..+|.+||+..+...++
T Consensus 286 ~~~~vl~vrg~~vpl~~L~ 304 (379)
T 1b3q_A 286 QDRDVIVIRGEVIPVYRLW 304 (379)
T ss_dssp TTEEEEEETTEEEEEEEHH
T ss_pred CCccEEEECCcEEeEEEHH
Confidence 5678999999998776654
No 13
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.93 E-value=3.9e-25 Score=213.17 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeH
Q 006704 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 342 ~~~~~l~~~isHelr~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
+.+.+++..++|++++||+.+...++.+... ..+++..+.++.+.+.++++...++++.... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4467899999999999999999999887653 3344456777777777777777766664321 24677
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006704 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~ 499 (634)
.+.+..+...+ ...++.+.++.+...+.....+...+.+++.|++.||+||++++.+.+.+...++
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---------- 160 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---------- 160 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC----------
Confidence 77777766655 3578888887766554445567888999999999999999988888877766543
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006704 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|+|.|||+||+++.. .|+|+||++||++++.|||+|+++|. + ||+|+
T Consensus 161 ----------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~v~~~gG~i~~~s~-~--Gt~~~ 210 (218)
T 3ehh_A 161 ----------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GTKLT 210 (218)
T ss_dssp ----------EEEEEEEESSCCCC-------------------------CHHHHHHHHHHHTTCEEEEECS-S--SEEEE
T ss_pred ----------EEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHHHHHHHcCCEEEEeCC-C--CeEEE
Confidence 399999999999998754 47899999999999999999999998 5 99999
Q ss_pred EEEEec
Q 006704 580 FLVKLG 585 (634)
Q Consensus 580 i~lp~~ 585 (634)
++||+.
T Consensus 211 i~lP~~ 216 (218)
T 3ehh_A 211 MAIPNN 216 (218)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 999974
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.91 E-value=1.3e-23 Score=190.20 Aligned_cols=146 Identities=22% Similarity=0.369 Sum_probs=128.0
Q ss_pred eeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCC
Q 006704 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (634)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~ 494 (634)
+++++.+++++++..++..+..+++.+.++.+++. .+.+|+..+.+++.||+.||++|+++ .+.+.+...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~----- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC-----
Confidence 47999999999999999999999999999876654 37789999999999999999999986 66666654433
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCC
Q 006704 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 574 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~ 574 (634)
.+.|.|.|+|+||+++..+++|+||++.+... .|.|+||++|+++++.|||++++++. +++
T Consensus 74 ---------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 134 (152)
T 1id0_A 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVAREITEQYEGKIVAGES-MLG 134 (152)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHHHHHHHTTCEEEEEEC-TTS
T ss_pred ---------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHHHHHHHcCCEEEEEeC-CCC
Confidence 28999999999999999999999999877543 58899999999999999999999998 889
Q ss_pred ceEEEEEEEecCC
Q 006704 575 GSTVTFLVKLGIC 587 (634)
Q Consensus 575 Gt~f~i~lp~~~~ 587 (634)
||+|+++||+...
T Consensus 135 G~~~~i~lP~~~~ 147 (152)
T 1id0_A 135 GARMEVIFGRQHS 147 (152)
T ss_dssp SEEEEEEECCCC-
T ss_pred cEEEEEEEecccc
Confidence 9999999998644
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=3.8e-23 Score=186.70 Aligned_cols=146 Identities=22% Similarity=0.346 Sum_probs=117.1
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCC
Q 006704 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL 492 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~ 492 (634)
+.+++++.+++++++..+.... +++.+.++.+ .+..+.+|+..|.+++.||+.||+||++++.+.+.+...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~--- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---
Confidence 4568999999999999988754 4566666543 34457789999999999999999999988877776655543
Q ss_pred CCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCC
Q 006704 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGL 572 (634)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~ 572 (634)
.+.|.|.|+|+||+++..+++|+||++.+.. ...|.|+||++||++++.|||++++++. +
T Consensus 77 -----------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~~~~~~gG~i~~~~~-~ 136 (150)
T 1ysr_A 77 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVAQQAQLHGGTASLENS-P 136 (150)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHHHHHHTTCEEEEEEC-T
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHHHHHHHcCCEEEEeec-C
Confidence 3999999999999999999999999986433 2458999999999999999999999998 8
Q ss_pred CCceEEEEEEEec
Q 006704 573 DKGSTVTFLVKLG 585 (634)
Q Consensus 573 g~Gt~f~i~lp~~ 585 (634)
++||+|++.||+.
T Consensus 137 ~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 137 LGGARLVLRLPGP 149 (150)
T ss_dssp TSSEEEEEEEECC
T ss_pred CCCEEEEEEEeCC
Confidence 9999999999974
No 16
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.90 E-value=7.3e-23 Score=187.20 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=125.9
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCC
Q 006704 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~ 490 (634)
.+..+++++.+++++++..+.. .+..+.+++... +..+.+|+..|.+++.||+.||+||+ .+.+.+.+...++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~- 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCC-
Confidence 4567799999999999998653 455666665443 33477899999999999999999999 7778887765543
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.+.|.|.|+|+||+++..+++|+||++.+... ...|+|+||++||++++.|||+|++++.
T Consensus 77 -------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-~~~g~GlGL~i~~~~~~~~gG~i~~~~~ 136 (161)
T 1bxd_A 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQRIVDNHNGMLELGTS 136 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHHHHHHHTSEEEEEEE
T ss_pred -------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-CCCCcccCHHHHHHHHHHcCCEEEEEEC
Confidence 38999999999999999999999999987653 2358999999999999999999999998
Q ss_pred CCCCceEEEEEEEecCCC
Q 006704 571 GLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 571 ~~g~Gt~f~i~lp~~~~~ 588 (634)
+++|++|++.||+....
T Consensus 137 -~~~G~~~~i~lP~~~~~ 153 (161)
T 1bxd_A 137 -ERGGLSIRAWLPVPVTR 153 (161)
T ss_dssp -TTTEEEEEEEECCCSCC
T ss_pred -CCCeEEEEEEEeCCccc
Confidence 89999999999986543
No 17
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.90 E-value=1.5e-22 Score=188.24 Aligned_cols=153 Identities=27% Similarity=0.444 Sum_probs=124.7
Q ss_pred eeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCC
Q 006704 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSD 494 (634)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~-g~i~i~~~~~~~~~~~~ 494 (634)
++++.++++++++.++.. ..+++.+.++++... ..+.+|+..|.+++.||+.||++|++. +.+.+.+.....+.
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD-LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC-CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC-cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999988 788999998876543 457889999999999999999999965 56666665443322
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCC
Q 006704 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLD 573 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g 573 (634)
.+.|.|.|+|+||+++..+++|++|++.+.... ...|.|+||++|+++++.|||+|++++. ++
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~-~~ 140 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSI-EG 140 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEE-TT
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEec-CC
Confidence 499999999999999999999999998765432 2348999999999999999999999998 89
Q ss_pred CceEEEEEEEecCCCC
Q 006704 574 KGSTVTFLVKLGICNN 589 (634)
Q Consensus 574 ~Gt~f~i~lp~~~~~~ 589 (634)
.||+|++.||+.....
T Consensus 141 ~Gt~~~i~lP~~~~~~ 156 (177)
T 3sl2_A 141 KGTTITFTLPYKEEQE 156 (177)
T ss_dssp TEEEEEEEEEEEC---
T ss_pred CCeEEEEEEeCCCCcc
Confidence 9999999999976554
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=2.5e-22 Score=181.55 Aligned_cols=145 Identities=27% Similarity=0.438 Sum_probs=124.9
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEeecCCC
Q 006704 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES 491 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~-~g~i~i~~~~~~~~~ 491 (634)
+.+++++.+++++++..++..+..+++.+.++.++.. ..+.+|+..+.+++.||+.||++|++ .+.+.+.+...++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~-- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT-- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSS--
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCC--
Confidence 4568999999999999999999999999999887553 34778999999999999999999995 4666666554332
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHH-HhCCEEEEEec
Q 006704 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSE 570 (634)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i~v~s~ 570 (634)
.+.|.|+|+|+|++++..+++|+||++++. .|+|+||++||++++ .|||++++++.
T Consensus 79 ------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 79 ------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp ------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred ------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 499999999999999999999999997652 478999999999999 99999999998
Q ss_pred CCCCceEEEEEEEec
Q 006704 571 GLDKGSTVTFLVKLG 585 (634)
Q Consensus 571 ~~g~Gt~f~i~lp~~ 585 (634)
+ +|++|++.||..
T Consensus 136 -~-~g~~~~i~lP~~ 148 (152)
T 3a0y_A 136 -E-NGVVFIFEIPKT 148 (152)
T ss_dssp -T-TEEEEEEEEESC
T ss_pred -C-CCEEEEEEeCCC
Confidence 4 599999999975
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=2e-22 Score=183.96 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=108.4
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC--CCcEEEEEEeec
Q 006704 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAK 488 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~--~g~i~i~~~~~~ 488 (634)
+++.+++++.+++++++..++.. ..+++.+.++.++..+. +.+|+..|.+++.||+.||+||+. .+.+.+.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 35567999999999999999887 67889998888776654 677999999999999999999997 566666665543
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEE
Q 006704 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLD 568 (634)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 568 (634)
... ........++.|.|.|+|+||+++..+++|++|++++. .|+|+||++|+++++.|||+++++
T Consensus 80 ~~~----------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~l~i~ 144 (160)
T 1r62_A 80 QLT----------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFT 144 (160)
T ss_dssp EEE----------ETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHHHHHHTTCEEEEE
T ss_pred ccc----------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----CCCccCHHHHHHHHHHCCCeEEEE
Confidence 310 00001112589999999999999999999999998653 478999999999999999999999
Q ss_pred ecCCCCceEEEEEEEec
Q 006704 569 SEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 569 s~~~g~Gt~f~i~lp~~ 585 (634)
+. +++ |+|++.||+.
T Consensus 145 s~-~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 145 SW-PGH-TEFSVYLPIR 159 (160)
T ss_dssp EE-TTE-EEEEEEEEEE
T ss_pred eC-CCC-EEEEEEEecc
Confidence 98 665 9999999974
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.88 E-value=9e-23 Score=191.92 Aligned_cols=150 Identities=20% Similarity=0.325 Sum_probs=123.1
Q ss_pred eeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-------------CCCcEE
Q 006704 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-------------KEGYVS 481 (634)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~-------------~~g~i~ 481 (634)
+++++.++++++...++..+..+++.+.++++.+.......+...+.+++.||+.||+||+ ..+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 5799999999999999999998899888887765433223344556677999999999996 345566
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhhccccc
Q 006704 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQS 537 (634)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~ 537 (634)
+.+...++ ++.|.|+|+|+||+++.+ +++|+||+++
T Consensus 83 I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~ 142 (189)
T 1i58_A 83 LSARHEGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFST 142 (189)
T ss_dssp EEEEEETT--------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSH
T ss_pred EEEEecCC--------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccc
Confidence 66554433 499999999999999876 8999999997
Q ss_pred CCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006704 538 RGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 538 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~ 585 (634)
+.......|+|+||++|+++++.|||+|+++|. +++||+|++.||+.
T Consensus 143 ~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~-~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 143 KEKVSEVSGRGVGMDVVKNVVESLNGSISIESE-KDKGTKVTIRLPLT 189 (189)
T ss_dssp HHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECC
T ss_pred cccCCCCCCCccCHHHHHHHHHHcCCEEEEEeC-CCCceEEEEEEeCC
Confidence 654333458899999999999999999999998 89999999999973
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.83 E-value=6.6e-20 Score=160.47 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=100.6
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCC
Q 006704 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (634)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~ 496 (634)
+++.+.++.+... ++.+++.+.++.+.+.+.....+...+.+++.|+++||+||++++.+.+.+...++
T Consensus 2 v~l~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~------- 70 (128)
T 3ehg_A 2 IRLKDELINIKQI----LEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK------- 70 (128)
T ss_dssp CCHHHHHHHHHHH----HHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT-------
T ss_pred ccHHHHHHHHHHH----HHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC-------
Confidence 3455555555544 44678888887765554445568889999999999999999988888887765543
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006704 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
.+.++|+|||+||+++.. .|+|+||++||++++.|||+++++|. + ||
T Consensus 71 -------------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~~~~~gG~i~~~s~-~--Gt 117 (128)
T 3ehg_A 71 -------------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GT 117 (128)
T ss_dssp -------------EEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHHHHHHHTTCEEEEECS-S--SE
T ss_pred -------------EEEEEEEECCcCcCcccC-----------------CCCCccHHHHHHHHHHcCCEEEEEeC-C--CE
Confidence 399999999999998754 37799999999999999999999998 5 99
Q ss_pred EEEEEEEec
Q 006704 577 TVTFLVKLG 585 (634)
Q Consensus 577 ~f~i~lp~~ 585 (634)
+|+++||+.
T Consensus 118 ~~~i~lP~~ 126 (128)
T 3ehg_A 118 KLTMAIPNN 126 (128)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999975
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=8.4e-19 Score=153.62 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=103.9
Q ss_pred eeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCC
Q 006704 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (634)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~ 494 (634)
+.+++.++++++...+ ..+++.+.++++...+.....|+..+.+++.||++||+||++++.+.+.+...+
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~------ 72 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDD------ 72 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESS------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcC------
Confidence 4688899999888877 467788888877665544445688999999999999999998887777765432
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCC-
Q 006704 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD- 573 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g- 573 (634)
. +.+.|.|+|+|++++. +|+||++||++++.|||++++++. ++
T Consensus 73 --------------~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 116 (129)
T 3zxo_A 73 --------------D-LCIEVTDNGRGMPDEF--------------------TGSGLTNLRQRAEQAGGEFTLASM-PGA 116 (129)
T ss_dssp --------------E-EEEEEEECCCCCTTTT--------------------CSHHHHHHHHHHHHTTCEEEEEEC-TTT
T ss_pred --------------C-EEEEEecCCCCCCccc--------------------CCcCHHHHHHHHHHcCCEEEEeeC-CCC
Confidence 2 7899999999998864 499999999999999999999998 77
Q ss_pred CceEEEEEEEec
Q 006704 574 KGSTVTFLVKLG 585 (634)
Q Consensus 574 ~Gt~f~i~lp~~ 585 (634)
+|++|+++||+.
T Consensus 117 ~G~~~~i~lP~~ 128 (129)
T 3zxo_A 117 SGTVLRWSAPLS 128 (129)
T ss_dssp CCEEEEEEEESC
T ss_pred CcEEEEEEecCC
Confidence 899999999974
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.76 E-value=6.3e-18 Score=146.91 Aligned_cols=122 Identities=22% Similarity=0.250 Sum_probs=99.5
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCC
Q 006704 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~ 497 (634)
++.+.++++...+ ...++.+.++++.+.+.....++..+.+++.|+++||+||++++.+.+.+...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~--------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVED--------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEE---------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCC---------
Confidence 4566666666666 457778887776665544444688999999999999999999887777765432
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceE
Q 006704 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~ 577 (634)
. +.++|+|||+|++++. .|+||++|+++++.|||++++++. +++|++
T Consensus 69 -----------~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~~~~~~~~gG~i~~~~~-~~~G~~ 115 (124)
T 3zxq_A 69 -----------D-VRVEVVDDGVGISGDI--------------------TESGLRNLRQRADDAGGEFTVENM-PTGGTL 115 (124)
T ss_dssp -----------E-EEEEEEECCCSSCGGG--------------------SHHHHHHHHHHHHHHTCEEEEEEC-TTSSEE
T ss_pred -----------C-EEEEEEECCCCCCccc--------------------cccCHHHHHHHHHHhCCEEEEEEc-CCCcEE
Confidence 2 7899999999999863 399999999999999999999998 888999
Q ss_pred EEEEEEec
Q 006704 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lp~~ 585 (634)
|+++||+.
T Consensus 116 ~~i~lP~~ 123 (124)
T 3zxq_A 116 LRWSAPLR 123 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999975
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.66 E-value=3.1e-16 Score=140.17 Aligned_cols=104 Identities=24% Similarity=0.382 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006704 455 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 455 ~d~~~l~qvl~nLl~NAik~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
.|...+.+++.||+.||++|+.. +.+.+.+...++ .+.|.|+|+|+||+ ..+++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~--------------------~~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC--------------------EEEEEEEECCCCcC--hHHHh
Confidence 47889999999999999999965 666666655433 39999999999999 88999
Q ss_pred hhcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006704 531 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 531 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~ 588 (634)
|++|++++.. ..|.|+||++|+++++ ++++++. +++||+|++.+|....+
T Consensus 93 ~~~~~~~~~~---~~~~GlGL~iv~~~~~----~i~~~~~-~~~Gt~v~~~lp~~~~~ 142 (145)
T 1th8_A 93 RQPLFTTKPE---LERSGMGFTIMENFMD----EVIVESE-VNKGTTVYLKKHGIHHH 142 (145)
T ss_dssp TCCC----------CCCSCHHHHHHHHSS----EEEEEEE-TTTEEEEEEEECCC---
T ss_pred hcccccCCCC---CCCCcchHHHHHHHHh----eEEEEeC-CCCCEEEEEEEeccccc
Confidence 9999987752 2578999999999988 8999998 89999999999976443
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.60 E-value=3.2e-15 Score=157.76 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=95.1
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006704 453 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
..+|+..|.|++.||+.||++|+..+ .+.+.+...+.. ..++.|+|+|||+||++++++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCc-----------------CcEEEEEEEECCCCCCHHHHH
Confidence 44578999999999999999999765 466665543311 014899999999999999999
Q ss_pred hhhhcccccCCCC--CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 006704 529 LLFTKFAQSRGSS--CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 587 (634)
Q Consensus 529 ~if~~f~~~~~~~--~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lp~~~~ 587 (634)
++|++|+++.... ....|+|+||++|+.+++.|||+ ++++|. +++|+ .|++.+|++..
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~-~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEECTT
T ss_pred HHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEe-cCCCceEEEEEEecccc
Confidence 9999997665432 22358999999999999999999 999998 78887 99999998754
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.59 E-value=2.4e-15 Score=160.34 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006704 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
|+..|.|++.||+.||++|+..+ .+.+.+...+.. ...+.|+|.|||+||++++++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCc-----------------CceEEEEEEECCCCCCHHHHHHHh
Confidence 45999999999999999999875 466666554311 014899999999999999999999
Q ss_pred hcccccCCCC--CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 006704 532 TKFAQSRGSS--CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 587 (634)
Q Consensus 532 ~~f~~~~~~~--~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lp~~~~ 587 (634)
++|+++.... ....|+|+||++|+.+++.|||+ ++++|. +++|+ .|+|.||++..
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~-~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEEETT
T ss_pred ccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe-cCCCeEEEEEEEEeccc
Confidence 9997765432 23358999999999999999999 999998 78887 99999998754
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.49 E-value=3.3e-13 Score=125.58 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccc
Q 006704 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (634)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 204 (634)
...++++..+++++++++++.++++++.+.+++|++++++.+++.+.+.+++++|.|++.+++.. ....+.+.......
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~-~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQTL-STIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEE-EEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCce-eeeeeeccccCccC
Confidence 45677888888999999999999999999999999999999999999999999999999954433 22233233222222
Q ss_pred cccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCC
Q 006704 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~ 284 (634)
..++ ..+.+..++.+++++.+++...++.+.........+..+.+.+||.. ++..+|++.+....
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITY--------------RNEMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEE--------------CCEEEEEEEeCcCC
Confidence 2244 47888999999999999988777665421111123567888889754 34468888888778
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHH
Q 006704 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (634)
Q Consensus 285 ~~~~~~~e~~ll~~~a~~~a~al~~a~l 312 (634)
++.|+++|++++..+|+|+++||++++.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998863
No 28
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.40 E-value=2.7e-13 Score=146.51 Aligned_cols=115 Identities=18% Similarity=0.329 Sum_probs=87.3
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006704 453 AVGDEKRLMQTILNIVGNAVKFTKE-G---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~qvl~nLl~NAik~~~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+.+|+..|.+++.||+.||++|+.. | .+.+.+.....+ ++.|+|+|||+||++++++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 5579999999999999999999874 4 455555443312 4899999999999999999
Q ss_pred hhhhcccccCCC---CCCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCc-eEEEEEEEecCC
Q 006704 529 LLFTKFAQSRGS---SCQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKG-STVTFLVKLGIC 587 (634)
Q Consensus 529 ~if~~f~~~~~~---~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~G-t~f~i~lp~~~~ 587 (634)
++|++|+++..- .....|.|+||++|+.+++.|||+ |+++|. .++| ..+++++|++..
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~-~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSK-TSPTAPAHYYELMINTS 154 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEE-CSSSSCEEEEECCCCSS
T ss_pred HHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEee-ccCCccceEEEEecchh
Confidence 999887654321 112358899999999999999999 899998 5543 555666665544
No 29
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.40 E-value=1.1e-12 Score=120.95 Aligned_cols=170 Identities=13% Similarity=0.126 Sum_probs=130.5
Q ss_pred hhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChh
Q 006704 134 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI 213 (634)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (634)
++++++++.+..++++++.+.+..+++++++.+++.+.+.++++.|+|++.++++..+....++.........++.+.+.
T Consensus 5 ~~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (181)
T 3e0y_A 5 QRANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGI 84 (181)
T ss_dssp ------CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCe
Confidence 34566777888999999999999999999999999999999999999999998877665566665554455567778889
Q ss_pred hHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhh
Q 006704 214 VTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHEL 293 (634)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~ 293 (634)
++.++.+++++.+++....+.+.........+..+.+.+||... +..+|++.+....++.|+++++
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~--------------~~~iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 85 TGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDK--------------KEVYGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp HHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECS--------------SCEEEEEEEEESSCCCCCHHHH
T ss_pred eeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeC--------------CeEEEEEEEeeCCCCCCCHHHH
Confidence 99999999999998776665544322333445677888887543 4468888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 294 ELIDVVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~~~ 317 (634)
+++..+|.++++++++++++++.+
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~~ 174 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASSR 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776543
No 30
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.38 E-value=7.6e-12 Score=114.27 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=133.2
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecc--ccccccccccCChhhHHH
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDV 217 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 217 (634)
.+.++.++++++.+.++.|++++++.+++.+.+.++++.|+|++.++++..+......+. .......++.+.+.++.+
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 345778999999999999999999999999999999999999999998876666555443 233334677788999999
Q ss_pred hccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHH
Q 006704 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (634)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (634)
+.+++++.+++...+..+.........+..+.+.+|+.. ++..+|++.+.+..++.|+++++++++
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIE--------------QGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEE--------------TTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEE--------------CCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 999999999987776665433333446677888888753 344688988888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006704 298 VVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 298 ~~a~~~a~al~~a~l~~~~~ 317 (634)
.++.++++++++++++++.+
T Consensus 150 ~la~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.34 E-value=6e-12 Score=117.15 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=129.2
Q ss_pred hhhchHHHhHHHHHHHHHHhcc-cchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEE-eecc--------ccccc
Q 006704 135 LILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 204 (634)
Q Consensus 135 ~~~~~~~~~~~l~~l~~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~--------~~~~~ 204 (634)
.++++.++.+.+.++++.+.++ +|++++++.+++.+.+.++++.|+|+++|+++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 4566778888999999999887 599999999999999999999999999998876655432 1111 12345
Q ss_pred cccccCChhhHHHhccCCeEEcCCCCchhhhhhc-ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC
Q 006704 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
..++.+.+.+++++.+++++.+++...+..+... ......+..+.+++||. .++..+|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIV--------------SRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEE--------------ETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEec--------------cCCeEEEEEEEEeC
Confidence 5677788999999999999999987766554321 11122455677888874 34456888888777
Q ss_pred CCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 284 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 284 ~~~-~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
.++ .|++++++++..+|.+++++|++++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 999999999999999999999999998776544
No 32
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.32 E-value=1.1e-11 Score=113.96 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=125.8
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEE-Eeeccc---cccccccccCChhhH
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQ---IQIGSSVPINLPIVT 215 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 215 (634)
+..++.+.++++.+.+++|++++++.+++.+.+.+++++|+|++.|+++..+... ..+... ......++...+.++
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 5667889999999999999999999999999999999999999999988776543 121111 122345567788889
Q ss_pred HHhccCCeEEcCCCCchhhhhhc-----ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccch
Q 006704 216 DVFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (634)
.++.+++++.++.......+... ......+..+.+.+||.. ++..+|++.+....++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRS--------------GGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEEE--------------CCEEEEEEEEEECCCCCCCH
Confidence 99999999988433323322211 001223456778888643 34579999998888889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 291 ~e~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
++++++..+|+++++|++|++++++.++
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999877643
No 33
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=114.55 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=122.7
Q ss_pred HHHhHHHHHHHHHH-hcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc---------ccccccccc
Q 006704 140 EETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPI 209 (634)
Q Consensus 140 ~~~~~~l~~l~~~i-~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (634)
.+..+.|.++++.+ .+++|++++++.+++.+.+.+++++|+||+.|+++..+......... ......+|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 33445678888875 67799999999999999999999999999999998876654332211 122334667
Q ss_pred CChhhHHHhccCCeEEcCCCCchhhhhhc-ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEe-cCCCCCc
Q 006704 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRK 287 (634)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~-~~~~~~~ 287 (634)
+.+..++++.+++++.+++...+..+... ......+.++.+++|+... +..+|++.+ ....++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~--------------~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSR--------------GSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEET--------------TEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeeccc--------------CceeeEEEEEEcCCCCC
Confidence 88889999999999999987766544321 1122334567778887432 334666654 5666789
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 288 WRDHELELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
|+++|+++++.+|.|+++||+|++++++.++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876543
No 34
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.26 E-value=3.5e-11 Score=110.08 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=101.5
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCC--hhhHHHhccCCeE
Q 006704 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFNSAQAM 224 (634)
Q Consensus 149 l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 224 (634)
.+.+|++++|++++++++++++++.+++|+|.||..++++..........++.+ .+..+|... +.....+..++++
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 467899999999999999999999999999999999998765444444443332 233333321 1245678889999
Q ss_pred EcCCCCchhhhh-hcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC-CCCCccchhhhHHHHHHHHH
Q 006704 225 RLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 225 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~~ 302 (634)
.++|........ ....-...+.++.+.+|+...+ ...|++.+.. ..+|.|++.|++++..+|+|
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vPi~~~~--------------~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDD--------------QLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEEEEETT--------------EEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEEEEECC--------------EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 888765421100 0011123456777788874433 3466666655 78999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006704 303 VAVALSHAAILEDS 316 (634)
Q Consensus 303 ~a~al~~a~l~~~~ 316 (634)
+++||.+++++++.
T Consensus 148 l~iAi~qa~l~~~~ 161 (171)
T 4glq_A 148 GSLVLERLHFLEQT 161 (171)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988664
No 35
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.25 E-value=9.3e-11 Score=106.49 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=127.8
Q ss_pred chHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc--cccccccccCChhhH
Q 006704 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVT 215 (634)
Q Consensus 138 ~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 215 (634)
++++.++.+.++++.+.+..+++++++.+++.+.+.++++.|+|++.++++..+......+.. ......++.+.+.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 456778899999999999999999999999999999999999999999887766665554432 233446677788999
Q ss_pred HHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHH
Q 006704 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELEL 295 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~l 295 (634)
.++.+++++.+++......+.........+....+.+|+.. ++..+|++.+....++.|+++++++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~f~~~~~~~ 149 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMY--------------RRKVMGVLVVQNKQPQDFSEAAESF 149 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEE--------------TTEEEEEEEEEESSCCCCCHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEeEEE--------------CCEEEEEEEEecCCCCCCCHHHHHH
Confidence 99999999999877665554432222334456777888643 3456888888887888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006704 296 IDVVADQVAVALSHAAILED 315 (634)
Q Consensus 296 l~~~a~~~a~al~~a~l~~~ 315 (634)
+..++.+++.++++++++++
T Consensus 150 l~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 150 LVTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 36
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.23 E-value=3.3e-11 Score=109.51 Aligned_cols=157 Identities=13% Similarity=0.230 Sum_probs=107.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc-cccccccccCChhhHHHhccCCeEEcCCCCchh
Q 006704 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLA 233 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (634)
..+++++++..++..+.+.++++.+++++++++...+......... .+.+..+|...+.+..++++++++..+......
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~~ 81 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQD 81 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTTC
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccccc
Confidence 3578999999999999999999999999998765444333222111 224556777788999999999999875444332
Q ss_pred hhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 006704 234 RIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
.+.........+.++.+++||... +..+|++.+.+..++.|+++++++++.+|+|++++++||++|
T Consensus 82 ~~~~~~~~~~~~~~S~l~vPL~~~--------------~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ly 147 (165)
T 3o5y_A 82 NFYEKQYLAILDLKSILVIPIYSK--------------NKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVELY 147 (165)
T ss_dssp CCTTHHHHHTTTCCEEEEEEEECS--------------SCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred ccccchHHHhhCCCEEEEeCeeEC--------------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111223456788899997543 345899999888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006704 314 EDSMRARNQLME 325 (634)
Q Consensus 314 ~~~~~~~~~l~~ 325 (634)
++.++.++++++
T Consensus 148 ~~~~~~~~~~~~ 159 (165)
T 3o5y_A 148 GQVLRSKQEWED 159 (165)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 988776665554
No 37
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.17 E-value=3.7e-10 Score=102.65 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccc--cccccccc--CChhhHHHhc
Q 006704 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~ 219 (634)
..++++++.+.++.+++++++.+++.+.+.+++++|+|++.|+++..+......+... .....++. ..+.+.+++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4678899999999999999999999999999999999999999888777776665432 23445555 5788899999
Q ss_pred cCCeEEcCCCCchhhhhhc----ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC-CccchhhhH
Q 006704 220 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ 294 (634)
+++++.+++.......... ......+....+.+||.. ++..+|++.+.+..+ +.|++++++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVV--------------KGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEE--------------TTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEe--------------CCcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999877765543211 011223456777888643 345688888887654 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006704 295 LIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 295 ll~~~a~~~a~al~~a~l~~~ 315 (634)
++..++.++++++++++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998763
No 38
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.11 E-value=2e-10 Score=108.95 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=91.7
Q ss_pred hhhhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecc-c--cccccccccC
Q 006704 134 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-Q--IQIGSSVPIN 210 (634)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 210 (634)
..++++.++.+.++++++.+++++|++++++.+++.+.+.+++++|.|++.++++........... . ...+..+|..
T Consensus 6 ~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (208)
T 2lb5_A 6 WAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAG 85 (208)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGG
T ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChh
Confidence 456677788889999999999999999999999999999999999999999987654444333322 1 1122222221
Q ss_pred C-h-hhHH------------------------HhccCCeEEcCCCCchhhhhh-cccCCCCCCceEEeecccccCCcccc
Q 006704 211 L-P-IVTD------------------------VFNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQIN 263 (634)
Q Consensus 211 ~-~-~~~~------------------------~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~ 263 (634)
+ + .... +..+++++.+++......... .......+.++.+.+|+..
T Consensus 86 ~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~------- 158 (208)
T 2lb5_A 86 DIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMH------- 158 (208)
T ss_dssp GCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEE-------
T ss_pred hCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEE-------
Confidence 1 0 1111 233444444444332211100 0000124567777888753
Q ss_pred CCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006704 264 DWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 264 ~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
++..+|++.+....++.|+++|+++++.+|.++++++.++++++.
T Consensus 159 -------~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 159 -------HQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -------TTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------CCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688888888889999999999999999999999999987753
No 39
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.08 E-value=1.8e-09 Score=113.27 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=130.6
Q ss_pred hhchHHHhHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhh
Q 006704 136 ILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (634)
.+++.++.+.+.++++.+.. ..++++++..+++.+.+.+++++|.|++.++++..+...............++.+.+..
T Consensus 191 ~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T 1ykd_A 191 ATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchh
Confidence 34455667788999999999 99999999999999999999999999999998777766555333333344667788899
Q ss_pred HHHhccCCeEEcC-CCCchhhhhhc---ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCC------
Q 006704 215 TDVFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG------ 284 (634)
Q Consensus 215 ~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~------ 284 (634)
+.++.+++++.++ +....+.+... ......+..+.+++||.. .++..+|++.+.+..
T Consensus 271 ~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~~~~iGvl~l~~~~~~~~~~ 337 (398)
T 1ykd_A 271 GIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN-------------GDQELIGVTQLVNKKKTGEFP 337 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEEC-------------SSSCEEEEEEEEEECCSSCCC
T ss_pred hHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeec-------------CCCCEEEEEEEEecCCccccc
Confidence 9999999999998 77665544322 011123467788888752 233467888776655
Q ss_pred --------------CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 285 --------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 285 --------------~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
++.|++++++++..+|.+++++|++++++++.++.
T Consensus 338 ~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 338 PYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999876544
No 40
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.07 E-value=1.1e-09 Score=97.63 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEEeccCCC----CeEEEEEeec--cccccccccccCChhhHHHhccCCeEEcCCCCc
Q 006704 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLN--NQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (634)
|++++|+.+++.+.+.++++.|+|+++++++ ..+......+ .....+..++.+.+.++.++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678999999999999999999999998764 4454443333 334456677888899999999999999998765
Q ss_pred hhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC-CCCccchhhhHHHHHHHHHHHHHHHHH
Q 006704 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
++ +.++.+++||.. ++..+|++.+.+. .++.|++++++++..+|.|+++++.++
T Consensus 81 d~-----------~~~s~l~vPL~~--------------~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLPLRA--------------TDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEEEEE--------------TTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEEEcc--------------CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 467888889753 3446888888776 788999999999999999999999999
Q ss_pred HHHHHH
Q 006704 311 AILEDS 316 (634)
Q Consensus 311 ~l~~~~ 316 (634)
+.+++.
T Consensus 136 ~~~~~~ 141 (149)
T 2vjw_A 136 SSQRRM 141 (149)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877653
No 41
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.06 E-value=8e-10 Score=101.97 Aligned_cols=160 Identities=13% Similarity=0.016 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCC-eEEEEEeecccc-ccccccccCChhhHHHhccC
Q 006704 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL-NLELSYTLNNQI-QIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 221 (634)
..++++++.+.++.|++++++.+++.+.+.++++.|+|+++++++. .+....+..... ......+...+.++.++.++
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSN 82 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCCCchhhhhhcC
Confidence 3578899999999999999999999999999999999999955442 223333333322 11223333567889999999
Q ss_pred CeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC-CCCCccchhhhHHHHHHH
Q 006704 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVA 300 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a 300 (634)
+++.+++................+..+.+.+||...+. ..+|++.+.+ ..++.|++++++++..+|
T Consensus 83 ~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~-------------~~~GvL~l~~~~~~~~f~~~d~~lL~~la 149 (181)
T 2qyb_A 83 RLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGE-------------PPFGILSVFSRTIVGLFNEPFLNLLESLA 149 (181)
T ss_dssp SCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTS-------------CCCEEEEEEESSCSSCCCHHHHHHHHHHH
T ss_pred CCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCC-------------eEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 99999876654432111111123456777888754333 1588888887 778899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006704 301 DQVAVALSHAAILEDS 316 (634)
Q Consensus 301 ~~~a~al~~a~l~~~~ 316 (634)
.+++++|++++.+++.
T Consensus 150 ~~~a~al~~a~~~~~~ 165 (181)
T 2qyb_A 150 GQLAQAVKIVTEMEAK 165 (181)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999655544
No 42
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.03 E-value=6e-10 Score=103.01 Aligned_cols=154 Identities=12% Similarity=0.168 Sum_probs=118.8
Q ss_pred HHHhHHHHHHHHHHhccc-chHHHHHHHHHHHHhhcCCceEEEEeccCCCC--eEEEE-Ee--eccc-------cccccc
Q 006704 140 EETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS-YT--LNNQ-------IQIGSS 206 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~l-d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~-~~--~~~~-------~~~~~~ 206 (634)
.+.++.+.++++.+.+++ |++++++.+++.+.+.+++++|+|+++|+++. .+... .. .+.. ......
T Consensus 3 ~~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3dba_A 3 LEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETV 82 (180)
T ss_dssp HHHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCE
T ss_pred hHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhcccccccee
Confidence 355778999999999999 99999999999999999999999999998754 33221 11 1211 122346
Q ss_pred cccCChhhHHHhccCCeEEcCCCCchhhhhhcccC-CCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC
Q 006704 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 285 (634)
+|.+.+.+++++.+++++.+++...++++...... .....++.+++||... +..+||+.+.+..+
T Consensus 83 ~~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~--------------~~viGVL~l~n~~~ 148 (180)
T 3dba_A 83 FPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQG--------------KEVLAVVMALNKLN 148 (180)
T ss_dssp ECTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEET--------------TEEEEEEEEEEESS
T ss_pred eeCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccC--------------CEEEEEEEEEeCCC
Confidence 77889999999999999999998887766432111 1234678899997543 34688888876654
Q ss_pred -CccchhhhHHHHHHHHHHHHHH
Q 006704 286 -RKWRDHELELIDVVADQVAVAL 307 (634)
Q Consensus 286 -~~~~~~e~~ll~~~a~~~a~al 307 (634)
..|++++.++++.+|.+++++|
T Consensus 149 ~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 149 ASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998
No 43
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.01 E-value=4.8e-09 Score=118.02 Aligned_cols=171 Identities=11% Similarity=0.085 Sum_probs=127.9
Q ss_pred hHHHhHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecc---ccccccccccCChhh
Q 006704 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIV 214 (634)
Q Consensus 139 ~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 214 (634)
+.++++.+.++++.+.+ ..+++++++.+++.+.+.+++++|+|++.+++ .+......+. .......+|.+.+..
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSS--EEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCC--eEEEEeecCCcccccccceeccCCCCHH
Confidence 34667889999999999 79999999999999999999999999999983 3333222221 223345677788999
Q ss_pred HHHhccCCeEEcCCCCchhhhhhcc-cCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC-Cccchhh
Q 006704 215 TDVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHE 292 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e 292 (634)
++++.+++++.+++...++++.... .....+.++.+++||...+ +..+||+.+.+..+ +.|+++|
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~-------------g~viGVL~l~~~~~~~~f~~~d 320 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNEN-------------QEVIGVAELVNKINGPWFSKFD 320 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSS-------------SCCCEEEEEEEESSSSSCCTTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCC-------------CCEEEEEEEEECCCCCCCCHHH
Confidence 9999999999999888876653211 1112345678888875431 33577777766554 4799999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 293 LELIDVVADQVAVALSHAAILEDSMRARNQLM 324 (634)
Q Consensus 293 ~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~ 324 (634)
+++++.+|.++++||++++++++.++..++.+
T Consensus 321 ~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~ 352 (691)
T 3ibj_A 321 EDLATAFSIYCGISIAHSLLYKKVNEAQYRSH 352 (691)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776654433
No 44
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.00 E-value=7.6e-09 Score=107.15 Aligned_cols=169 Identities=10% Similarity=0.088 Sum_probs=126.4
Q ss_pred hchHHHhHHHHHHHHHHhcc-cchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEE-eeccccccccccccCChhh
Q 006704 137 LTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (634)
++++++++.+.++++.+.+. .++++++..+++.+.+.+++++|+|++.|++........ +..........++.+.+.+
T Consensus 174 ~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 253 (368)
T 1mc0_A 174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIA 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCCceEEEEeccccccccccceeecCCCcee
Confidence 34556678899999999999 699999999999999999999999999998433333222 1222333455677788899
Q ss_pred HHHhccCCeEEcCCCCchhhhhhcccC-CCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCC-ccchhh
Q 006704 215 TDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHE 292 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e 292 (634)
+.++.+++++.+++....+.+...... ...+..+.+.+||... ++..+|++.+.+..++ .|++++
T Consensus 254 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~~~~iGvl~l~~~~~~~~f~~~d 320 (368)
T 1mc0_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKFD 320 (368)
T ss_dssp HHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECT-------------TSCEEEEEEEEEETTSSSCCHHH
T ss_pred eeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECC-------------CCcEEEEEEEEECCCCCCCCHHH
Confidence 999999999999987766554311100 0122467788887442 2446888888776654 799999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 293 LELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 293 ~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
+++++.+|.+++++|++++++++.++
T Consensus 321 ~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 321 EDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.00 E-value=9.2e-09 Score=106.55 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCC
Q 006704 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
.+.+.++++.+ +++|++++++.+++.+.+.++++.|+||+.++++..+......+........+|.+.+.++.++.+++
T Consensus 13 ~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~ 91 (368)
T 1mc0_A 13 DRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ 91 (368)
T ss_dssp HHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred hHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcCC
Confidence 45688889999 89999999999999999999999999999998877666554443222233456778889999999999
Q ss_pred eEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecC-CCCCccchhhhHHHHHHHH
Q 006704 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVAD 301 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~ 301 (634)
++.+++...++.... ......+..+.+.+|+... .++..+|++.+.. ..++.|++++.+++..++.
T Consensus 92 ~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl~~~------------~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la~ 158 (368)
T 1mc0_A 92 CIQLKDLTSDDVQQL-QNMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHCFH 158 (368)
T ss_dssp CEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHH
T ss_pred eEEeccccccccccc-ccccCcccceEEEEEeecC------------CCCcEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Confidence 999998887664221 1122334677888887543 0134677777554 4456799999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006704 302 QVAVALSHAAILEDSMR 318 (634)
Q Consensus 302 ~~a~al~~a~l~~~~~~ 318 (634)
++++++.+++++++.++
T Consensus 159 ~~~~al~~~~l~~~~~~ 175 (368)
T 1mc0_A 159 YTGTVLTSTLAFQKEQK 175 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876544
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.93 E-value=3.8e-09 Score=94.00 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=109.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc--cccc-cccccCChhhHHHhccCCeEEcCCCCc
Q 006704 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (634)
+++|++++++.+++.+.+.++++.|+|++.+++ ..+......+.. .... ..++...+.+..++.+++++.+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 567899999999999999999999999999955 344443333322 1111 356667889999999999999988766
Q ss_pred hhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC-CccchhhhHHHHHHHHHHHHHHHHH
Q 006704 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
+..+..... ...+....+.+||. .++..+|++.+....+ +.|++++++++..++.+++++++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVPVR--------------VRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEEEE--------------ETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEeeEE--------------ECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 655442222 33455677788874 3445688888877766 7999999999999999999999999
Q ss_pred HHHHHH
Q 006704 311 AILEDS 316 (634)
Q Consensus 311 ~l~~~~ 316 (634)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 988653
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.92 E-value=2.5e-09 Score=95.40 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=102.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhh
Q 006704 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 156 ~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
+.|++++++.+++.+.+.++++.|+|++.|+++ .+......+.+.... ....+.+.++.++.+++++.+++...++.+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 468899999999999999999999999999887 555544443221111 113355567889999999999987766543
Q ss_pred hhcc-cCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006704 236 RLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
.... .....+.++.+.+||.. ++..+|++.+....++.|++++++++..++.+++.++++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFPLVT--------------EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEEES--------------SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEeceEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11122446777888743 44468888888888889999999999999999999999887643
No 48
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.90 E-value=5.3e-08 Score=87.94 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCC
Q 006704 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
...+.++.+.+....|+++.|..++..+.+.++++.|.+++.|+++..+.+....+. .....++.+.+.++.+..+++
T Consensus 16 ~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~~~~~i~~geGi~G~v~~~g~ 93 (167)
T 3mmh_A 16 REVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--LACTRIPFGRGVCGQAWAKGG 93 (167)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--CCCSEEETTSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--ccceEeccCCChHHHHHhCCc
Confidence 456778888889999999999999999999999999999999887777666544443 234578889999999999999
Q ss_pred eEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHH
Q 006704 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (634)
++.+++...++.+.. .....++.+++|+.. ++..+||+.+.+..++.|+++|.++++.+|.+
T Consensus 94 ~~~v~Dv~~~p~~~~----~~~~~~S~i~vPi~~--------------~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 94 TVVVGDVDAHPDHIA----CSSLSRSEIVVPLFS--------------DGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp CEEESCGGGSTTCCC----SSTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcchhh----cCccCCeEEEEEecc--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999988776532 234567888999753 34579999999988899999999999999999
Q ss_pred HHHHHH
Q 006704 303 VAVALS 308 (634)
Q Consensus 303 ~a~al~ 308 (634)
++.++.
T Consensus 156 la~~i~ 161 (167)
T 3mmh_A 156 LEKRFE 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 49
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.89 E-value=7.1e-08 Score=101.01 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=121.2
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHH----HHHhhcCCceEEEEeccCCCCeEEEEEeeccc-cccccccccCChhh
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLV----ELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 214 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~----~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 214 (634)
++.+..+.++.+.+.+ .+++.+++.+++ .+.+.++++.|+||+.|+++..+......+.. ......+|.+.+.+
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 4455667777777754 887776665555 48999999999999999988766665554432 22344677888999
Q ss_pred HHHhccCCeEEcCCCCch---hhhhhccc-CCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC-------
Q 006704 215 TDVFNSAQAMRLPYNCPL---ARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 283 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~---~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~------- 283 (634)
+.++.+++++.+++.... ..+..... ....+..+.+.+|+.. .++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLS-------------EQGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEEC-------------SSCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEEC-------------CCCCEEEEEEEeccCCccccc
Confidence 999999999999987765 44432211 1123456788888753 22346788877665
Q ss_pred --------CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 284 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 284 --------~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
.++.|++++.+++..++.++++++++++++++..+.
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~ 194 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQK 194 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987665443
No 50
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.89 E-value=4.8e-08 Score=85.59 Aligned_cols=149 Identities=12% Similarity=0.028 Sum_probs=99.1
Q ss_pred hhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCC-eEEEEEeeccccccccccccCChhh
Q 006704 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL-NLELSYTLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (634)
...+..+++.+.++++.| ..++.+++++.+++...+.+++++|.+|++|+++. ....+++..... ....+..+....
T Consensus 7 ~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~~l~~~aa~G~~~~l-~~lr~~~~~~~~ 84 (160)
T 3cit_A 7 SQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADNGVQTTARHGSKERL-STLETTADPLAI 84 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--CCCEEEEEESCHHHH-TTSCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCCceeeeeccCchhhh-hhhhcccccccc
Confidence 334566788899999999 77778999999999999999999999999998643 233334411100 011111111010
Q ss_pred HHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEe-cCCCCCccchhhh
Q 006704 215 TDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHEL 293 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~-~~~~~~~~~~~e~ 293 (634)
+ +++.. ......++.+++||.. ..+..+|++.+ ++.+...|+++|+
T Consensus 85 g-----------------pr~~~---~tg~~t~svl~vPL~~-------------~~g~~~Gvlql~N~~~~~~f~~eD~ 131 (160)
T 3cit_A 85 G-----------------PQWLE---RPGTHLPCVLLLPLRG-------------ADEGSFGTLVLANSVAISAPDGEDI 131 (160)
T ss_dssp S-----------------CEEEE---CTTSSSCEEEEEEEEC-------------SSSSEEEEEEEEESSCCCCCCHHHH
T ss_pred c-----------------ccccc---ccCcccceeEEEeeec-------------CCCcEEEEEEEeccCCCCCCCHHHH
Confidence 0 12221 2233457778888742 22345777766 5555558999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 294 ELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
+.+..+|.+++.+++|++++++.+..
T Consensus 132 e~l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 132 ESLQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 51
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.86 E-value=3.3e-08 Score=111.23 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhc
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFN 219 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (634)
.++.+.+.++++.|+ .+|++++++.+++.+.+.+++++|+||+.++++..+......+........+|.+ +.+++++.
T Consensus 11 ~e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~ 88 (691)
T 3ibj_A 11 TDRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVE 88 (691)
T ss_dssp TTHHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHH
Confidence 344577999999999 9999999999999999999999999999999887766544433222223456778 89999999
Q ss_pred cCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCC-CCCccchhhhHHHHH
Q 006704 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDV 298 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~ 298 (634)
+++++.+++...++.+... .....+.++.+++|+... .++..+|++.+... .++.|++++.+++..
T Consensus 89 ~~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI~~~------------~~g~viGvL~l~~~~~~~~ft~~d~~lL~~ 155 (691)
T 3ibj_A 89 DKKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLEGDLFTDEDEHVIQH 155 (691)
T ss_dssp HCCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEEECS------------SSCSEEEEEEEESBSSSCCCCTTHHHHHHH
T ss_pred HCCeEEeccchhccccccc-cccCCccceEEEEEeEcC------------CCCcEEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence 9999999998876644321 122234678888897532 12446888875544 456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006704 299 VADQVAVALSHAAILEDSM 317 (634)
Q Consensus 299 ~a~~~a~al~~a~l~~~~~ 317 (634)
++.++++++.+++++++..
T Consensus 156 la~~~a~al~~a~l~~~~~ 174 (691)
T 3ibj_A 156 CFHYTSTVLTSTLAFQKEQ 174 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776543
No 52
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.76 E-value=1.4e-07 Score=87.45 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=120.8
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhc-CCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHh
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVF 218 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (634)
+.....+.++...+.+..|+++.+..++..+.+.+ +++.|.+++.+++ .+.+....+. .....++.+.+.++.+.
T Consensus 25 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~aa 100 (195)
T 1vhm_A 25 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTAV 100 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHHH
Confidence 34456788899999999999999999999999999 9999999999874 3333322222 33567788999999999
Q ss_pred ccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHH
Q 006704 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (634)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (634)
.+++++.+++...++.+.. .....++.+.+|+.. ++..+||+.+.+..+..|++++.++++.
T Consensus 101 ~tg~~i~V~Dv~~~p~~~~----~~~~~~S~l~VPI~~--------------~g~viGVL~i~s~~~~~F~e~d~~~L~~ 162 (195)
T 1vhm_A 101 ARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPLVV--------------KNQIIGVLDIDSTVFGRFTDEDEQGLRQ 162 (195)
T ss_dssp HHTSCEEESCTTTCTTCCC----SCCCCSEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHH
T ss_pred hcCCEEEECCcccCcchhh----cCCCccEEEEEeEeE--------------CCEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 9999999999888765431 234568888999753 3446999999888888999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006704 299 VADQVAVALSHAA 311 (634)
Q Consensus 299 ~a~~~a~al~~a~ 311 (634)
+|.+++.+++++.
T Consensus 163 lA~~ia~ale~a~ 175 (195)
T 1vhm_A 163 LVAQLEKVLATTD 175 (195)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998665
No 53
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.68 E-value=1.5e-07 Score=85.86 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccc---cccccccccCC--hhhHHH----------------
Q 006704 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINL--PIVTDV---------------- 217 (634)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~---------------- 217 (634)
++++++++++++.+.+++++|.|++.++++............ ...+..+|..+ ......
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 368999999999999999999999999876544444443321 11223333211 111112
Q ss_pred --------hccCCeEEcCCCCchhhhhh-cccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCcc
Q 006704 218 --------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (634)
Q Consensus 218 --------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (634)
..+++++.+++......+.. .......+.++.+.+|+... +..+|++.+.+..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~--------------~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH--------------QELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS--------------SCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC--------------CEEEEEEEEEeCCCCCC
Confidence 33444444444332211110 00111345667777776543 33477887777789999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 006704 289 RDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 289 ~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
+++|+++++.+|.++++++++++++
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999876
No 54
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.64 E-value=1.1e-06 Score=92.99 Aligned_cols=161 Identities=6% Similarity=-0.015 Sum_probs=108.4
Q ss_pred HHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccc--ccccccccCC--hhhHH
Q 006704 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (634)
+..+.++.++..|+++++++++++++++++++++++|||.||-.++++..........+.. ..|..+|..+ .....
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 4466789999999999999999999999999999999999999999987666655555443 2344444321 22345
Q ss_pred HhccCCeEEcCCCCchhh---------------hhhcccCC----------CCCCceEEeecccccCCccccCCCCcccc
Q 006704 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGRY----------VPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|...... ++.+.... ..+.++.+.+|+ +..|
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI-------------~~~~ 268 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISI-------------VVGG 268 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------ECSS
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEE-------------EECC
Confidence 556666666666554310 00000000 123344455554 3333
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006704 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
. ..|++.+....+|.|+..++.+++.++.+++++|.++..+++
T Consensus 269 ~-LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 269 K-LWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp S-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 355555555569999999999999999999999987765544
No 55
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.62 E-value=3.8e-07 Score=91.44 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=105.9
Q ss_pred HHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCC--hhhH
Q 006704 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVT 215 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ 215 (634)
.+..+.+..++..|++++|++++++++++++++++++|||.||-.++++.....+....+... .|..+|..+ ....
T Consensus 143 ~~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar 222 (337)
T 2ool_A 143 NEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSR 222 (337)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHH
Confidence 345667899999999999999999999999999999999999999999887666655554432 333333321 1224
Q ss_pred HHhccCCeEEcCCCCchhh---------------hhhcccCC----------CCCCceEEeecccccCCccccCCCCccc
Q 006704 216 DVFNSAQAMRLPYNCPLAR---------------IRLLVGRY----------VPPDIVAVRVPLLHLSNFQINDWPELPA 270 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~ 270 (634)
..+..+....+.|...... ...+.... ..+.++.+.+|+ +..
T Consensus 223 ~ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI-------------~~~ 289 (337)
T 2ool_A 223 ALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISI-------------VRD 289 (337)
T ss_dssp HHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------EET
T ss_pred HHHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEE-------------EEC
Confidence 4555566656665543210 00000000 012344445554 333
Q ss_pred ccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006704 271 KSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 271 ~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
+.. .|+++++...+|.|+..++++++.++.+++++|.++...+
T Consensus 290 ~~L-WGLl~~Hh~~pR~w~~~e~~~~e~la~~l~iai~q~e~~~ 332 (337)
T 2ool_A 290 NRL-WGMISCHNLTPRFVSYEVRQACELIAQVLTWQIGVLEEAE 332 (337)
T ss_dssp TEE-EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cee-EEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4455555455999999999999999999999997665443
No 56
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.61 E-value=5.6e-07 Score=89.16 Aligned_cols=156 Identities=8% Similarity=0.020 Sum_probs=106.0
Q ss_pred HHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCC--hhhHH
Q 006704 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 216 (634)
+..+.+..++.+|++++|++++++++++++++++|+||+.||-.++++.....+....+... .|..+|..+ .....
T Consensus 131 ~~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ 210 (327)
T 4e04_A 131 AFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARR 210 (327)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHH
Confidence 34567999999999999999999999999999999999999999999887666666555433 333333321 12244
Q ss_pred HhccCCeEEcCCCCchhh---------------hhhcccC----------CCCCCceEEeecccccCCccccCCCCcccc
Q 006704 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|....+. +..+... ...+.++.+.+|+. ..|
T Consensus 211 ly~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~-------------~~~ 277 (327)
T 4e04_A 211 LYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISIL-------------RGE 277 (327)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEE-------------ETT
T ss_pred HHHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEE-------------ECC
Confidence 556666666666543210 0000000 01233445555543 333
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 006704 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
. ..|++.+...++|.|+..++++++.++.+++++|...
T Consensus 278 ~-LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 278 R-LWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp E-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3555555667899999999999999999999999543
No 57
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.59 E-value=1.7e-06 Score=91.65 Aligned_cols=161 Identities=9% Similarity=0.020 Sum_probs=108.9
Q ss_pred HHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccc--ccccccccCC--hhhHH
Q 006704 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (634)
+..+.+..++..|+++++++++++++++++++++++|||.||-.++++.....+....+.. ..|..+|..+ .....
T Consensus 135 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ 214 (520)
T 3zq5_A 135 GFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARR 214 (520)
T ss_dssp THHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHH
Confidence 3456789999999999999999999999999999999999999999987766655555443 2334444321 12244
Q ss_pred HhccCCeEEcCCCCchhh---------------hhhcccC----------CCCCCceEEeecccccCCccccCCCCcccc
Q 006704 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|....+. +..+... ...+.++.+.+|+. ..|
T Consensus 215 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~-------------~~~ 281 (520)
T 3zq5_A 215 LFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLI-------------KDG 281 (520)
T ss_dssp HHHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEE-------------ETT
T ss_pred HHHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEE-------------ECC
Confidence 556666666666543211 0000000 01233445555543 333
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006704 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
. ..|++.+....+|.|+..++++++.++.+++++|.++..+++
T Consensus 282 ~-LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~~~~ 324 (520)
T 3zq5_A 282 H-LWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTET 324 (520)
T ss_dssp E-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 355555566689999999999999999999999987765544
No 58
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.57 E-value=6.5e-07 Score=88.90 Aligned_cols=156 Identities=6% Similarity=0.010 Sum_probs=106.0
Q ss_pred HHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCC--hhhHH
Q 006704 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 216 (634)
+..+.+..++.+|++++|++++++++++++++++++||+.||-.++++.....+....+... .+..+|..+ .....
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 44567899999999999999999999999999999999999999999887766666655433 333343321 12344
Q ss_pred HhccCCeEEcCCCCchhh---------------hhhcccC----------CCCCCceEEeecccccCCccccCCCCcccc
Q 006704 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|....+. +..+... ...+.++.+.+|+ +..+
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI-------------~~~~ 295 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSV-------------VVGG 295 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEE-------------EETT
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEE-------------EECC
Confidence 556666666665544311 0000000 0123344455554 3333
Q ss_pred cceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 006704 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
. ..|++++....+|.|+..++++++.++.+++++|...
T Consensus 296 ~-LWGLL~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 333 (343)
T 3s7o_A 296 Q-LWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVK 333 (343)
T ss_dssp E-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEEcCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3555555558899999999999999999999999544
No 59
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.50 E-value=2e-06 Score=78.82 Aligned_cols=146 Identities=6% Similarity=0.006 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhhc-----CCceEEEEeccCCC-CeEEEEEeeccccccccccccCChhhHH
Q 006704 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTD 216 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (634)
...+.++...+....|+...+..++..+.+.+ +++.|.+++.++++ ..+.+... ........++.+.+.++.
T Consensus 26 ~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~--~g~~~~~~i~~g~Gi~G~ 103 (180)
T 1f5m_A 26 EQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPF--QGKVACQMIQFGKGVCGT 103 (180)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEE--EESCCCSEEETTSHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeec--CCCccceeecCCCcchhh
Confidence 34577788888888999999999999999999 89999999998754 44444222 122235667889999999
Q ss_pred HhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHH
Q 006704 217 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 296 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 296 (634)
+..+++++.+++...++.+. ....+.++.+++|+.. .++..+||+.+.+..++.|++++.+++
T Consensus 104 aa~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi~~-------------~~g~viGVL~l~s~~~~~F~~~d~~~L 166 (180)
T 1f5m_A 104 AASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPIIS-------------NDGKTLGVIDIDCLDYEGFDHVDKEFL 166 (180)
T ss_dssp HHHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEEEC-------------TTSCEEEEEEEEESSTTCCCHHHHHHH
T ss_pred hhhcCCEEEeCCcccCcccc----ccCcccceEEEEEEEc-------------CCCeEEEEEEeccCCCCCcCHHHHHHH
Confidence 99999999999988877654 2234667888888743 244579999999888889999999999
Q ss_pred HHHHHHHHHHH
Q 006704 297 DVVADQVAVAL 307 (634)
Q Consensus 297 ~~~a~~~a~al 307 (634)
+.+|.+++.++
T Consensus 167 ~~la~~~a~~~ 177 (180)
T 1f5m_A 167 EKLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 60
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.48 E-value=1.7e-06 Score=77.73 Aligned_cols=142 Identities=6% Similarity=0.002 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhcC-CceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCC
Q 006704 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
..+.++..-+.+..|+...|..++..+.+.++ .+.|.+|+.+++ .+.+....+. .....++.+.+.++.+..+++
T Consensus 18 ~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg~ 93 (171)
T 3rfb_A 18 MLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHFQE 93 (171)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhhCC
Confidence 35666667777889999999999999999997 899999999864 3333322222 235678889999999999999
Q ss_pred eEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHH
Q 006704 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (634)
++.+++....+.+- ......++.+.+|+.. ++..+||+.+.+..++.|+++|.++++.+|.+
T Consensus 94 ~i~V~Dv~~~p~~i----~~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 94 TVIVGDVTTYLNYI----SCDSLAKSEIVVPMMK--------------NGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp CEEESCTTSCSSCC----CSCTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcccc----ccCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 99999998877653 1234567888999753 34579999999988889999999999999999
Q ss_pred HHHHH
Q 006704 303 VAVAL 307 (634)
Q Consensus 303 ~a~al 307 (634)
++.++
T Consensus 156 la~~~ 160 (171)
T 3rfb_A 156 LLEKT 160 (171)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 87654
No 61
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.44 E-value=2.8e-06 Score=75.55 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhhcC-CceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCe
Q 006704 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (634)
.+.++..-+.+..|+...|..++..+.+.++ .+.|.+|+.+++...+....+. .....++.+.+.++.+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~~L~l~~~~G~----~a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILGPFQGH----PACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETTEEEEEEEEES----CCCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECCEEEEEeccCC----cccEEeeCCCCHHHHHHhhCCE
Confidence 4566666677788999999999999999997 9999999998654333333332 2356788899999999999999
Q ss_pred EEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHH
Q 006704 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (634)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~ 303 (634)
+.+++....+.+-. .....++.+.+|+.. ++..+||+.+.+..++.|+++|.++++.+|.++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVPIFK--------------DDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEEEEE--------------TTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999988776532 224567888999753 345799999999888899999999999999998
Q ss_pred HHHH
Q 006704 304 AVAL 307 (634)
Q Consensus 304 a~al 307 (634)
+-.+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7554
No 62
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.41 E-value=3.2e-08 Score=114.07 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred hchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCC--eEE------EEEeecccc--ccccc
Q 006704 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLE------LSYTLNNQI--QIGSS 206 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~------~~~~~~~~~--~~~~~ 206 (634)
+++.++++.+.++++.|.+++|++++++.+++.+.+.+++++|+|++.++++. ... ...+..... .....
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45566778899999999999999999999999999999999999999998743 111 122222111 23445
Q ss_pred cccCChhhHHHhccCCeEEcCCCCchhhhhhcccC-CCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCC
Q 006704 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 285 (634)
+|.+.+.++.++.+++++.+++...++.+...... ...+.++.+++|+. .+++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~-------------~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIK-------------NHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEeeE-------------cCCCCEEEEEEEEecCC
Confidence 67778889999999999999988777666532211 12234555666653 33445688888776654
Q ss_pred C---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 286 R---KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (634)
Q Consensus 286 ~---~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~ 320 (634)
+ .|+++|.+++..++.+++++|.+++++++..+.+
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~ 330 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLEN 330 (878)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999999887655443
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.39 E-value=5.7e-07 Score=93.82 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHHHhhcC----CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006704 456 DEKRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.||++||++|+ +.|.+.+.+....++ .+.++|.|+|+|+++.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~------ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHR------ 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCC------
Confidence 45678999999999999998 357777777665332 3999999999999875
Q ss_pred hcccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006704 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
. ...+.|+||.+++.+++.++ +++. +.|+++++.+|++.
T Consensus 349 ----~------~~~~~G~GL~lv~~l~~~~~----~~~~--~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 349 ----D------GARGRGRGLAMAEALVSEAR----IMHG--AGGTTATLTHRLSR 387 (399)
T ss_dssp ------------------CHHHHHTTSSEEE----EEEE--TTEEEEEEEEECEE
T ss_pred ----C------CCCCCCcHHHHHHHHHHhee----eEEC--CCcEEEEEEEEcCC
Confidence 0 11356999999999887554 5554 57999999999854
No 64
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.38 E-value=1.1e-06 Score=88.72 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006704 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. ++.+.+.+.. ++. ..|+|.|||+||++++++.+|++|++++
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--GGA-------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--CCc-------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 47899999999999987 4566665542 221 4799999999999999999999999876
Q ss_pred CCC-------CCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 539 GSS-------CQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~-------~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
... ...++.|+||+.+..+ +++++.|.
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~ 115 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASISSV-----SRLTLTSR 115 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEE
T ss_pred ccccchhhhccccCccccchhhhhcC-----CcEEEEEe
Confidence 432 1223579999877543 26777776
No 65
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.36 E-value=7.5e-07 Score=90.80 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006704 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. ++.+.+.+.. ++. ..|+|.|||+||++++++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~~~-------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--YGV-------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--CCc-------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 47899999999999976 4556665542 221 5799999999999999999999999886
Q ss_pred CCCC------CCCCc-cccHHHHHHHHHHhCCEEEEEec
Q 006704 539 GSSC------QTPRA-GLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~------~~~g~-GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.... ...|. |+||+.+..+ . ++++.+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~ 125 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTC 125 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEE
T ss_pred cccccchhcccccCCCCchhhhhhhh----c-cEEEEEc
Confidence 5421 11244 8888876554 3 6777766
No 66
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.33 E-value=1.3e-06 Score=87.67 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006704 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. ++.+.+.+. .++. ..|+|.|||+||++++++.+|++|+++|
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~~~-------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EGGL-------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GGGT-------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eCCE-------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 46799999999999985 455666653 2221 5799999999999999999999999987
Q ss_pred CCCCC------C-CCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006704 539 GSSCQ------T-PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 539 ~~~~~------~-~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
..... . +-.|.||+.+..+. ++++.|...|....+.+.+
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~~~~~~~~~~ 131 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTADGKCAYRASY 131 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSS-----EEEEEEECTTCSSEEEEEE
T ss_pred cCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECCCCceEEEEE
Confidence 65321 1 12367776555442 6888876333323444444
No 67
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.31 E-value=1.6e-07 Score=88.53 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=18.4
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCCccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006704 558 VNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 558 v~~~gG~i~v~s~~~g~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+..|||+|+++|. +|+||+|++.+|+.....+..... ........+.+|||||||+.+|..++
T Consensus 16 ~~~hgG~i~v~S~-~g~Gs~f~~~lP~~~~~~~~~~~~--------~~~~~~~~~~~ILiVdDd~~~~~~l~ 78 (206)
T 3mm4_A 16 RGSHMASTDSESE-TRVKSVRTGRKPIGNPEDEQETSK--------PSDDEFLRGKRVLVVDDNFISRKVAT 78 (206)
T ss_dssp ------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHH
T ss_pred ccccCCceeeecc-CCCcceeeeccCCCCCcccccccC--------CCcccccCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999 999999999999865443222111 11223357789999999999998754
No 68
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.24 E-value=1.3e-07 Score=108.96 Aligned_cols=175 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhchHHHhHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEE-Eee-ccc--------ccc
Q 006704 135 LILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTL-NNQ--------IQI 203 (634)
Q Consensus 135 ~~~~~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~-~~~--------~~~ 203 (634)
..+++.++.+.+.++++.+.. +.+++++++.++..+.+.+++++|+|++.++++..+... ... .+. ...
T Consensus 325 ~~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~ 404 (878)
T 3bjc_A 325 TSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTRE 404 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhcccccccccccccccc
Confidence 344445556677788888854 579999999999999999999999999999876644332 111 111 011
Q ss_pred ccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCC-C---CCCceEEeecccccCCccccCCCCcccc-cceEEEE
Q 006704 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY-V---PPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVL 278 (634)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~~vl 278 (634)
...+|.+.+.++.+..+++++.+++...+..+....... . .+.++.+++||.. .+ +..+||+
T Consensus 405 ~~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~-------------~~~g~viGVL 471 (878)
T 3bjc_A 405 HDANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKN-------------GKKNKVIGVC 471 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEec-------------CCCCcEEEEE
Confidence 345566778889999999999998877766654322111 1 2345666777643 21 3467788
Q ss_pred EecCCCC------CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 279 MLPTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (634)
Q Consensus 279 ~~~~~~~------~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~ 322 (634)
.+.+..+ +.|++++.++++.+|.++++||++++++++.++..++
T Consensus 472 ~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 472 QLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp --------------------------------------------------
T ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766544 6999999999999999999999999999887766544
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.18 E-value=1.7e-05 Score=72.98 Aligned_cols=144 Identities=11% Similarity=0.058 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccceeeeHHHHHH
Q 006704 345 NDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (634)
Q Consensus 345 ~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~ 424 (634)
-..++...||+.|-|+.|.|++++ ...++..+|+..+....+.... +.++. .-.+..++
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql----~~ydea~~yI~~~~~~~q~~~~-------~~~i~---------~P~la~lL- 80 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSL----QKYDRVFEMIEEMVIDAKHESK-------LSNLK---------TPHLAFDF- 80 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHH-------HHTTT---------CHHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHH-------HHhCC---------CHHHHHHH-
Confidence 345566789999999999999987 3334555666555555544322 22221 11223332
Q ss_pred HHHHHHHHhhhcCCceEEE-EeCCCCCceEEccHHHHHHHHHHHHHHHhhc----CCCCcEEEEEEeec-CCCCCCCCCC
Q 006704 425 EVIKLIKPVASCKKLSMTL-IMAPELPTYAVGDEKRLMQTILNIVGNAVKF----TKEGYVSIIASVAK-PESLSDWRPP 498 (634)
Q Consensus 425 ~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~d~~~l~qvl~nLl~NAik~----~~~g~i~i~~~~~~-~~~~~~~~~~ 498 (634)
-.. ..+.+++.+.+ .+++... ....+..+..++ +.+.||+.. ...+.+.+.+.... ++
T Consensus 81 ---l~K--~~~a~e~~i~lev~~~~s~--l~~~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~-------- 144 (192)
T 1ixm_A 81 ---LTF--NWKTHYMTLEYEVLGEIKD--LSAYDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDR-------- 144 (192)
T ss_dssp ---HHG--GGSCCSSEEEEEEESSCCC--CTTTHHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSS--------
T ss_pred ---HHH--HHHhccCCeEEEEecCccc--cCCCcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCC--------
Confidence 222 22456777777 3333221 111344444433 222444433 23455666665531 22
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccc
Q 006704 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 536 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~ 536 (634)
.+.|.|.|+|++|+++.++++|+..++
T Consensus 145 -----------~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 145 -----------QLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp -----------SCEEEEEEESCBSCGGGCC--------
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 289999999999999999999985543
No 70
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.16 E-value=1.4e-06 Score=89.58 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=60.3
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh----
Q 006704 454 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (634)
Q Consensus 454 ~~d~~~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 529 (634)
.++...+.+++.|+++||+++ ..+.|.+.+. .+ -.|+|.|||+|||+++.++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~--~~---------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN--ED---------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC--TT---------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE--cC---------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 357778888888888888874 3455555542 21 1589999999999999887
Q ss_pred ----hhhcccccCCC-----CCCCCCccccHHHHHHHHHHh
Q 006704 530 ----LFTKFAQSRGS-----SCQTPRAGLGLAICRRFVNLM 561 (634)
Q Consensus 530 ----if~~f~~~~~~-----~~~~~g~GlGL~i~k~iv~~~ 561 (634)
+|..++++..- .....+.|+||++|+.+++.+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 89887765321 111236899999999998744
No 71
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.6e-06 Score=86.43 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcccccC
Q 006704 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. +..+.+.+. +++. ..|+|.|||+||++++++.+|++|+++|
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DYGL-------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TTTT-------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eCCE-------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 46789999999999976 455666552 2221 5799999999999999999999999987
Q ss_pred CCCCC-CC-----C-ccccHHHHHHHHHHhCCEEEEEec
Q 006704 539 GSSCQ-TP-----R-AGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~~-~~-----g-~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
..... .. | .|.||+.+..+ +++++.+.
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr 116 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITT 116 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHS-----SEEEEEEE
T ss_pred CCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEE
Confidence 64321 01 1 15666655443 26777776
No 72
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.13 E-value=9.4e-06 Score=67.08 Aligned_cols=150 Identities=12% Similarity=0.219 Sum_probs=106.8
Q ss_pred HHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeecccc---cccccccc---CChhhHHHhccCCeE
Q 006704 151 HEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI---QIGSSVPI---NLPIVTDVFNSAQAM 224 (634)
Q Consensus 151 ~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~ 224 (634)
+.++.-.|.+++.....+-+.++.++.-.++|+.|.....+.-..+.+-+. +.-..+|. .-+.+...++.++.+
T Consensus 6 er~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hl 85 (162)
T 3eea_A 6 ERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHL 85 (162)
T ss_dssp CCGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCE
T ss_pred HhHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcc
Confidence 344566788999999999999999999999999999888888777766432 12223333 456778888888888
Q ss_pred EcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCC-ccchhhhHHHHHHHHHH
Q 006704 225 RLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQV 303 (634)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~~ll~~~a~~~ 303 (634)
.+++.....-++.. ..........+.+|| ..|+..+||+.+.+...+ .|+++|+.++..+|+++
T Consensus 86 l~~dp~~s~l~tp~-l~k~~~~~~ILgVPL--------------~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahA 150 (162)
T 3eea_A 86 MLTDPGSSDLLTPK-LRKLLRNLCVLAVPM--------------VVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHA 150 (162)
T ss_dssp EESCGGGCTTSCHH-HHHHTTTEEEEEEEE--------------EETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCcchhccHH-HHHHHhhCeEEEecc--------------eeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHH
Confidence 87765443222211 111123445566665 446667999998888888 99999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006704 304 AVALSHAAILED 315 (634)
Q Consensus 304 a~al~~a~l~~~ 315 (634)
|+|+++++++++
T Consensus 151 AIAIdnArLldE 162 (162)
T 3eea_A 151 ALVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHhhhhcC
Confidence 999999988753
No 73
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.11 E-value=4.1e-05 Score=84.69 Aligned_cols=158 Identities=9% Similarity=0.031 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccc--cccccccCC--hhhHHHhc
Q 006704 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFN 219 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 219 (634)
..+..+...|++++|++++++++++++++++|.|++.||..++++....++....+... .|..+|..+ ......+.
T Consensus 132 ~~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 211 (635)
T 4eho_A 132 GTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYE 211 (635)
T ss_dssp TTSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999887766666555433 333444322 12344555
Q ss_pred cCCeEEcCCCCchh---------------hhhhcccCCC----------CCCceEEeecccccCCccccCCCCcccccce
Q 006704 220 SAQAMRLPYNCPLA---------------RIRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (634)
Q Consensus 220 ~~~~~~l~~~~~~~---------------~~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (634)
.+....+.+..... ....+..... .+.++.+.+|+ +..+ ..
T Consensus 212 ~~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi-------------~~~~-~L 277 (635)
T 4eho_A 212 RQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSL-------------VVGG-KL 277 (635)
T ss_dssp HSCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------EETT-EE
T ss_pred cCCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEE-------------EEcc-ee
Confidence 55555555543211 0000000000 12334444454 3333 34
Q ss_pred EEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006704 275 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 275 ~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
.|+++++...++.|+.+++.+++.++.++++++.++..+++
T Consensus 278 WGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 318 (635)
T 4eho_A 278 WGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQ 318 (635)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHH
Confidence 55666666679999999999999999999999987766544
No 74
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.08 E-value=2.1e-05 Score=65.60 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
....+++..+.+.+|++.++||+|||++.+.++++.+.+. .....+.+...++++..+++++++|
T Consensus 49 m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 49 LRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455577899999999999999999999987643 3445689999999999999999886
No 75
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.72 E-value=8.7e-06 Score=77.07 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.+.+....+. ..|.|.|||.||++++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 588999999999864 23444444443322 3689999999999999
Q ss_pred hhhhhhccc
Q 006704 527 IPLLFTKFA 535 (634)
Q Consensus 527 ~~~if~~f~ 535 (634)
+...|..+.
T Consensus 89 l~~~l~~ia 97 (220)
T 2wer_A 89 LINNLGTIA 97 (220)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHhHh
Confidence 877765543
No 76
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.46 E-value=0.00052 Score=56.86 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006704 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (634)
Q Consensus 338 ~~~~~~~~~l~~~isHelr~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 403 (634)
+...+.+.+++..++||+++|++.+.+.++.+... ..+..+.+.+.+.++..+++++++++
T Consensus 54 ~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 54 KQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344467899999999999999999999887543 24667889999999999999988764
No 77
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.42 E-value=8.1e-05 Score=71.91 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+...... -.|.|.|||.||++++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 378899999998764 24455555443322 3689999999999999
Q ss_pred hhhhhhcccccCC-----------CCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 527 IPLLFTKFAQSRG-----------SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~~-----------~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|..+.+.+. .....+..|+|++.+..++ -++.|.|.
T Consensus 131 L~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va----~~v~V~Sr 181 (264)
T 1yc1_A 131 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITK 181 (264)
T ss_dssp HHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEE
T ss_pred HHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC----CEEEEEEe
Confidence 8766654433221 1111123589988665443 44555554
No 78
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.40 E-value=2.4e-05 Score=74.69 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||.||++++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 478999999999862 33344444443332 2589999999999999
Q ss_pred hhhhhhcccccCCC-------------CCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 527 IPLLFTKFAQSRGS-------------SCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~~~-------------~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|..+.+.+.. ....+..|+|+..+.. .+-++.|.|.
T Consensus 110 l~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr 162 (235)
T 2ior_A 110 VIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTR 162 (235)
T ss_dssp HHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEE
T ss_pred HHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEe
Confidence 98877555433210 0011235888875532 2345666555
No 79
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.33 E-value=2.1e-05 Score=76.16 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006704 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 463 vl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
++.+|++||.++.. .+.+.|.+....+. -.|.|.|||+||+.+++
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 78899999999853 23344444443332 36899999999999987
Q ss_pred hhhhhc
Q 006704 528 PLLFTK 533 (634)
Q Consensus 528 ~~if~~ 533 (634)
...|..
T Consensus 92 ~~~l~t 97 (269)
T 1qy5_A 92 VKNLGT 97 (269)
T ss_dssp HHHHHS
T ss_pred HHHhhh
Confidence 665543
No 80
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.19 E-value=0.00049 Score=70.54 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCCCCC--------hhhhhhcccccCCCC---CC-CCC-ccccHHHHHHHHH
Q 006704 512 RVQVNDSGCGVPPQD--------IPLLFTKFAQSRGSS---CQ-TPR-AGLGLAICRRFVN 559 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~---~~-~~g-~GlGL~i~k~iv~ 559 (634)
.|+|.|||+|||.++ .+.+|..+..+..-. .. +.| .|.||+.+..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 489999999999988 567888865542211 11 123 6999999988874
No 81
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.99 E-value=0.0011 Score=67.86 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------hh
Q 006704 459 RLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 529 (634)
Q Consensus 459 ~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 529 (634)
-+.+++.+++.||++.+-.| ...|.+....++ .|+|.|||+|||.+.. +-
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~~~~~~~~~~el 92 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN---------------------SVSVQDDGRGIPTGIHPEEGVSAAEV 92 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS---------------------CEEEEECSSCCCCSBCTTTSSBHHHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC---------------------EEEEEECCCCcccCcccccCcchHHH
Confidence 68888888888888874333 223333333222 5899999999999884 34
Q ss_pred hhhcccccCCCC---CC-CCC-ccccHHHHHHHHH
Q 006704 530 LFTKFAQSRGSS---CQ-TPR-AGLGLAICRRFVN 559 (634)
Q Consensus 530 if~~f~~~~~~~---~~-~~g-~GlGL~i~k~iv~ 559 (634)
+|..+..+..-. .. +.| .|.|++.+..+.+
T Consensus 93 v~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 93 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp HHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred hheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 776444432111 11 123 6999999888775
No 82
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.96 E-value=0.00013 Score=68.68 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
-++.+|++||.++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~--------------------~~i~V~DnG~GMs~ed 94 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 94 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCe--------------------eEEEEEeCCCCCCHHH
Confidence 457788999887642 12344554443332 3689999999999998
Q ss_pred hhhhhhcccccC-----------CCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 527 IPLLFTKFAQSR-----------GSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~-----------~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|....+++ ......+-.|+||+.+-.+ .-++.|.|.
T Consensus 95 l~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v----ad~v~V~Sr 145 (228)
T 3t0h_A 95 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITK 145 (228)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEE
T ss_pred HHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc----CCEEEEEEe
Confidence 866554332211 1111112448888766332 235666665
No 83
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.88 E-value=0.00025 Score=67.56 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~--------------------~~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 94 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC--------------------CEEEEEECCcCCCHHH
Confidence 468899999998853 12234444433322 2689999999999999
Q ss_pred hhhhhhcccccCCC-------C------CC---CCCccccHHHHHHHHHHhCCEEEEEec
Q 006704 527 IPLLFTKFAQSRGS-------S------CQ---TPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~~~-------~------~~---~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|....++... . .. .+..|+|+..+..++ .++.|.|.
T Consensus 95 l~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr 150 (236)
T 2gqp_A 95 LVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSK 150 (236)
T ss_dssp HHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEE
T ss_pred HHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEe
Confidence 87777554332110 0 00 012488876554443 57777776
No 84
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.76 E-value=0.00046 Score=66.45 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCCCChhh
Q 006704 512 RVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~ 529 (634)
.|.|.|||.||+++++..
T Consensus 94 tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp EEEEEECSCCCCHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 689999999999988754
No 85
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.54 E-value=0.0038 Score=57.64 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------hh
Q 006704 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 529 (634)
Q Consensus 461 ~qvl~nLl~NAik~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 529 (634)
..++.+|+.||++... ...|.+.+ ..++ .|+|.|||+|||.++. +.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g---------------------~i~V~DnG~GIp~~~~~~~~~~~~e~ 75 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIHPEEGVPAVEL 75 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTCSSBHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC---------------------EEEEEECCCCcCcccccccCcchhhe
Confidence 7788899999998843 34444443 3221 4899999999999874 33
Q ss_pred h-hhcccccCCCCC---CCCC-ccccHHHHHHHH
Q 006704 530 L-FTKFAQSRGSSC---QTPR-AGLGLAICRRFV 558 (634)
Q Consensus 530 i-f~~f~~~~~~~~---~~~g-~GlGL~i~k~iv 558 (634)
+ +....++|-... .+.| .|.||+.+..+.
T Consensus 76 i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 76 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp HHHCC---------------------CHHHHHTE
T ss_pred eeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 3 334333332111 0112 478888777665
No 86
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.54 E-value=0.0024 Score=68.22 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||+++.. .+...|.+....++ -.|+|.|||.||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 468899999998861 22233444333332 2689999999999998
Q ss_pred hhhhhhcc
Q 006704 527 IPLLFTKF 534 (634)
Q Consensus 527 ~~~if~~f 534 (634)
+..-+...
T Consensus 90 l~~~l~ti 97 (559)
T 1y4s_A 90 VIDHLGTI 97 (559)
T ss_dssp HHHHHSCC
T ss_pred HHHHHhhh
Confidence 76655443
No 87
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.51 E-value=0.0026 Score=64.64 Aligned_cols=78 Identities=10% Similarity=0.003 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhhcc
Q 006704 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF 534 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f 534 (634)
+..-+..++.+++.||++.+-.| ...|.+...+++ .|+|.|||.|||. +-+|...
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g---------------------~I~V~DnGrGIp~---e~v~~lh 82 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG---------------------SIALFCTSRTVTA---ENLVRVA 82 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEEEESSCCH---HHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC---------------------EEEEEECCCCcCH---hHeeeee
Confidence 56789999999999999974322 233444333322 5899999999998 5566333
Q ss_pred cccCCCC----CCCCCccccHHHHHHHH
Q 006704 535 AQSRGSS----CQTPRAGLGLAICRRFV 558 (634)
Q Consensus 535 ~~~~~~~----~~~~g~GlGL~i~k~iv 558 (634)
.++|-.. +...=+| |++.+..+-
T Consensus 83 agsKf~~~~~~~~y~vsG-Gls~vnalS 109 (369)
T 3cwv_A 83 TGAGFLGRPPGDGWGWDS-MLVVSLALS 109 (369)
T ss_dssp TTTTGGGSSCCCSTTTTS-SHHHHHHTE
T ss_pred cCCCcCCCcccccccccC-HHHHHHHhh
Confidence 3332221 1122235 887776663
No 88
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=96.51 E-value=0.00027 Score=67.38 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||.++.. ...+.|.+....+. -.|.|.|||.||++++
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnG~GMt~ed 122 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCc--------------------eEEEEecCCCCcCHHH
Confidence 457888888888742 12344444443332 3689999999999998
Q ss_pred hhhhh
Q 006704 527 IPLLF 531 (634)
Q Consensus 527 ~~~if 531 (634)
+..-|
T Consensus 123 l~~~l 127 (256)
T 3o0i_A 123 LINNL 127 (256)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 75544
No 89
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0017 Score=70.49 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006704 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 463 vl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
++.+|++||.++.. .+...|.+....++ -.|+|.|||+||+.+++
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~edl 89 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAEL 89 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC--------------------CEEEEEECCCCCCHHHH
Confidence 68899999998852 22234444433332 26899999999999887
Q ss_pred hhhhhccccc-----------CCCCCCCCCccccHHHHHHHHH------------------HhCCEEEEEe----cCCCC
Q 006704 528 PLLFTKFAQS-----------RGSSCQTPRAGLGLAICRRFVN------------------LMGGHIWLDS----EGLDK 574 (634)
Q Consensus 528 ~~if~~f~~~-----------~~~~~~~~g~GlGL~i~k~iv~------------------~~gG~i~v~s----~~~g~ 574 (634)
..-+...-++ .......+.-|+|++.+-..++ .-||...++. .+.+.
T Consensus 90 ~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~ 169 (677)
T 2cg9_A 90 INNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGR 169 (677)
T ss_dssp HGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSS
T ss_pred HHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCC
Confidence 6544322111 0111122345788766532221 1245666665 22467
Q ss_pred ceEEEEEEE
Q 006704 575 GSTVTFLVK 583 (634)
Q Consensus 575 Gt~f~i~lp 583 (634)
||++++.|.
T Consensus 170 GT~I~L~Lk 178 (677)
T 2cg9_A 170 GTILRLFLK 178 (677)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999888864
No 90
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=96.17 E-value=0.00069 Score=63.84 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.5
Q ss_pred EEEEEEEcCCCCCCCChh
Q 006704 511 LRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~ 528 (634)
-.|.|.|||.||+++++.
T Consensus 86 ~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp TEEEEEECSCCCCHHHHH
T ss_pred cEEEEEeCCCCCCHHHHH
Confidence 368999999999998873
No 91
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.84 E-value=0.015 Score=54.27 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcCCC---CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh-------
Q 006704 458 KRLMQTILNIVGNAVKFTKE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------- 527 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------- 527 (634)
.-+.+++.+++.||++.+-. ..+.+.+ ..++ .|+|.|||+|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g---------------------~i~V~DnGrGIp~~~~~~~~~~~ 90 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIHPEEGVSA 90 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSEETTTTEEH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCC---------------------cEEEEECCcCcccccccccCcch
Confidence 56889999999999987432 3344443 3222 4899999999999864
Q ss_pred -hhhhhccccc-CCCCC---CC-CCccccHHHHHHHHH
Q 006704 528 -PLLFTKFAQS-RGSSC---QT-PRAGLGLAICRRFVN 559 (634)
Q Consensus 528 -~~if~~f~~~-~~~~~---~~-~g~GlGL~i~k~iv~ 559 (634)
+-+|.....+ +-... .+ .-.|.|++.+..+-+
T Consensus 91 ~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 91 AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp HHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEE
T ss_pred hhheeeecccCCCcCCCccccccCccceecchhccccc
Confidence 3345322221 11110 01 124889998877654
No 92
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=95.74 E-value=0.0027 Score=68.66 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||+++.. .+...|.+....+. -.|+|.|||+||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 568899999999861 22233444333332 2689999999999998
Q ss_pred hhhhhhc
Q 006704 527 IPLLFTK 533 (634)
Q Consensus 527 ~~~if~~ 533 (634)
+..-+..
T Consensus 90 l~~~l~t 96 (624)
T 2ioq_A 90 VIDHLGT 96 (624)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7665543
No 93
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=95.66 E-value=0.003 Score=68.63 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 qvl~nLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||.++.. .+.+.|.+....+. -.|+|.|||+||+.++
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 478899999998851 23344444443332 2588999999999988
Q ss_pred hhhhhh
Q 006704 527 IPLLFT 532 (634)
Q Consensus 527 ~~~if~ 532 (634)
+..-|.
T Consensus 108 l~~~l~ 113 (666)
T 2o1u_A 108 LVKNLG 113 (666)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 765553
No 94
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.55 E-value=0.015 Score=53.47 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006704 456 DEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
+...+..++.+++.||++.+- ...+.+.+ ..++ .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i--~~~g---------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI--EKDN---------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE--EGGG---------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE--eCCC---------------------eEEEEECCCCccccc
Confidence 567899999999999999642 34444443 3221 589999999999873
No 95
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.41 E-value=0.047 Score=55.87 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhhcC-C---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC------
Q 006704 457 EKRLMQTILNIVGNAVKFT-K---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD------ 526 (634)
Q Consensus 457 ~~~l~qvl~nLl~NAik~~-~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~------ 526 (634)
..-|.+++.+++.||++.+ . ...+.|.+. .++ -.|+|.|||+|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~--~~~--------------------~~I~V~DnGrGIPv~~h~~~~~ 107 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PEN--------------------NLISIWNNGKGIPVVEHKVEKM 107 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTT--------------------TEEEEEEESSCCCCSEETTTTE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE--CCC--------------------CEEEEEECCCcccCccccccCc
Confidence 4579999999999999986 2 344444443 321 1589999999999987
Q ss_pred --hhhhhhcccc-cCCC----CCCCCCccccHHHHHHHH
Q 006704 527 --IPLLFTKFAQ-SRGS----SCQTPRAGLGLAICRRFV 558 (634)
Q Consensus 527 --~~~if~~f~~-~~~~----~~~~~g~GlGL~i~k~iv 558 (634)
.+-+|..... .+-. .-..+-.|.|++.+..+-
T Consensus 108 ~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 108 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred cchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 3345552222 2111 001113489999887663
No 96
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.32 E-value=0.023 Score=53.14 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC-------h
Q 006704 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-------I 527 (634)
Q Consensus 456 d~~~l~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-------~ 527 (634)
+..-|.+++.+++.||++.+-.| ...+.+....++ .|+|.|||.|||.+. .
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g---------------------~i~V~DnG~GIp~~~h~~~~~~~ 95 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG---------------------SLTVQDHGRGMPTGMHAMGIPTV 95 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEECSSCCCCSBCGGGCBHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC---------------------eEEEEEcCCCccccccccCceeh
Confidence 45678899999999999875332 223333333222 489999999999998 5
Q ss_pred hhhhhccccc-CCCC---CC-CCCccccHHHHHHHHH
Q 006704 528 PLLFTKFAQS-RGSS---CQ-TPRAGLGLAICRRFVN 559 (634)
Q Consensus 528 ~~if~~f~~~-~~~~---~~-~~g~GlGL~i~k~iv~ 559 (634)
+-+|.....+ +-.. .. ..-.|.|++.+..+-+
T Consensus 96 e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 96 EVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp HHHHHCBC--------------CGGGCCHHHHHHTEE
T ss_pred heeEEeecccCccCccceEeccccccccchhhhhccc
Confidence 5566422221 1110 01 1124889988776654
No 97
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=94.72 E-value=0.17 Score=49.28 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeccCCC-CeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhhc
Q 006704 160 HTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL 238 (634)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (634)
..+.+..++-+++..+++.++||..++++ .........++ ...+..+++.+.+++.+++...+........
T Consensus 25 ~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~~---- 96 (298)
T 4eu0_A 25 DALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLERG---- 96 (298)
T ss_dssp HHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC----------
T ss_pred hHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhcc----
Confidence 44567788888999999999999988765 33322333333 2356678999999999999988875321110
Q ss_pred ccCCCCCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 006704 239 VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 239 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
..........++||. ..++...|++++..-....++++.+.++..++++++.++.++...
T Consensus 97 --~~~~~sryL~viPLl-------------d~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 97 --EQRAHSAAAVCVPLV-------------DTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ---------CCEEEEEE-------------CTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred --ccccccceEEEEEee-------------cCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 001133555677764 344557999999998889999999999999999999999776543
No 98
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=94.00 E-value=0.15 Score=52.33 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh----
Q 006704 458 KRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 529 (634)
.-|.+++.++|.||++.+ ....+.+.+. .++ -.|+|.|||+|||.+..+.
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~--~d~--------------------~sI~V~DnGrGIPv~~h~~~g~~ 120 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIH--AEE--------------------HTIEVKNDGKGIPIEIHNKENIY 120 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTT--------------------TEEEEEEESSCCCCSBCTTTCSB
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEE--CCC--------------------CEEEEEECCCcccCcccccCCcc
Confidence 468999999999999765 1244444443 221 1588999999999876443
Q ss_pred ----hhhcccccCCCC---CC--CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006704 530 ----LFTKFAQSRGSS---CQ--TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 530 ----if~~f~~~~~~~---~~--~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lp~ 584 (634)
+|........-. -. ..-.|.|.+.|..+-+. +.++......|-.+...+--
T Consensus 121 ~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y~q~f~~ 180 (418)
T 1pvg_A 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKYVQKWEN 180 (418)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEEEEEEET
T ss_pred cceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEEEEEEEc
Confidence 554333221111 01 12348999888766544 34443301245555555543
No 99
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=93.96 E-value=0.013 Score=55.11 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 006704 512 RVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if 531 (634)
.|+|.|||.||+.+++..-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58899999999999887644
No 100
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.40 E-value=0.12 Score=52.67 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------hhhh
Q 006704 461 MQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PLLF 531 (634)
Q Consensus 461 ~qvl~nLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~if 531 (634)
.+++.+++.||++.+-.| .-.|.+....++ .|+|.|||.|||.+.. +-+|
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dg---------------------sI~V~DnGrGIPv~~h~~~~~~~~e~i~ 110 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDG---------------------SCEVSDDGRGMPVDIHPEEKIPGVELIL 110 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---------------------CEEEEECSSCCCCSBCTTTCSBHHHHHH
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCC---------------------eEEEEEcCCCCCcccccccCCcchheEE
Confidence 677888888888764322 223333333222 4899999999999874 3345
Q ss_pred hcccccCCCC----CCCC-CccccHHHHHHHHHH
Q 006704 532 TKFAQSRGSS----CQTP-RAGLGLAICRRFVNL 560 (634)
Q Consensus 532 ~~f~~~~~~~----~~~~-g~GlGL~i~k~iv~~ 560 (634)
.....+..-. ..+. -.|.|++.+..+-+.
T Consensus 111 t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 111 TRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp HCC--------------------CHHHHHHTEEE
T ss_pred EecccCCCcCCCceeecCCccccccceehhccCe
Confidence 3222211100 0111 248899888776543
No 101
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=91.84 E-value=2.2 Score=40.48 Aligned_cols=158 Identities=14% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhh----hhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeec
Q 006704 123 KNRADELDREMGL----ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (634)
Q Consensus 123 ~~~~~~l~~~~~~----~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (634)
++..++|+.+... .+..++....+..+...+....++++++......+.+.|+++.+.+++.++.....
T Consensus 78 R~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~------- 150 (252)
T 3e98_A 78 RERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV------- 150 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc-------
Confidence 3344444444433 33333334567888888999999999999999999999999999999987643210
Q ss_pred cccccccccc--cCChhhHHHhccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCccccCCCCcccccceEE
Q 006704 199 NQIQIGSSVP--INLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVM 276 (634)
Q Consensus 199 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~ 276 (634)
+...+ .....+...+..+.+.. ............+........+.-.+||. .++ .+|
T Consensus 151 -----~~~~~~~~~~~~~~~~l~~~~py~-G~l~~~e~~~lFg~~~a~~v~S~AllpL~--------------~~~-~~G 209 (252)
T 3e98_A 151 -----GRSVSSAEAHQAIGGLLSGGKTVC-GVLRPHELAFLFGESDRDEIGSAAVVSLS--------------FQG-LHG 209 (252)
T ss_dssp -----SEEECHHHHHHHHHHHHTTCCCST-TCCCHHHHHHHCCCTTGGGCCEEEEEEEE--------------SSS-EEE
T ss_pred -----hhhccchhHHHHHHHHhCCCCceE-CCCCchHHHHhcCCCccccccceEEEEcC--------------CCC-ceE
Confidence 00000 01112333343333321 11111111111111011233455556652 122 588
Q ss_pred EEEecCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 006704 277 VLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 308 (634)
Q Consensus 277 vl~~~~~~~~~~~~~-e~~ll~~~a~~~a~al~ 308 (634)
++++.+..+..|+++ ...+++.+|.-++.++.
T Consensus 210 lLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 210 VLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp EEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred EEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 888888888888766 67888888888777663
No 102
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=88.22 E-value=0.93 Score=52.84 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------
Q 006704 458 KRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------ 527 (634)
Q Consensus 458 ~~l~qvl~nLl~NAik~~~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------ 527 (634)
.-|.+++.++|.||++.+-.| .+.|.+... ++ .|+|.|||.|||-+..
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~-d~---------------------sisV~DnGRGIPvd~h~~~~~~ 115 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE-EH---------------------TIEVKNDGKGIPIEIHNKENIY 115 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT-TT---------------------EEEEEECSSCCCCSBCTTTCSB
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECC-CC---------------------EEEEEecCCcccccccCCCCCE
Confidence 368999999999999864322 244443322 22 5899999999997643
Q ss_pred --hhhhhcccccCCCCC-----CCCCccccHHHHHHHHH
Q 006704 528 --PLLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 559 (634)
Q Consensus 528 --~~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 559 (634)
+-+|....+...-+. ..+-.|.|.+.|..+-+
T Consensus 116 ~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp HHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred eeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 234544333211111 11234899888877654
No 103
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=84.43 E-value=0.41 Score=54.25 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=61.1
Q ss_pred hccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCcc-------ccCCCCcccccceEEEEEecCCCCCccch
Q 006704 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ-------INDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (634)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (634)
+...+.+.+++.++.+++.|++..|..+....|++.|.+.+.-| ...|++|++|.|.+.|.+.+.++ .|++
T Consensus 694 i~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~ 771 (795)
T 4a2l_A 694 ISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNP 771 (795)
T ss_dssp GGGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCS
T ss_pred cccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCC
Confidence 33457789999999999999999999999999999998876543 24789999999999999988776 6765
Q ss_pred hh
Q 006704 291 HE 292 (634)
Q Consensus 291 ~e 292 (634)
.+
T Consensus 772 ~~ 773 (795)
T 4a2l_A 772 IP 773 (795)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 104
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.25 E-value=0.43 Score=53.72 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=60.8
Q ss_pred ccCCeEEcCCCCchhhhhhcccCCCCCCceEEeecccccCCcc--------ccCCCCcccccceEEEEEecCCCCCccch
Q 006704 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ--------INDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (634)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~--------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (634)
...+.+.+++.++.+++.|++..|..+....|++.|.+.+.-| ...|++|++|.|.+.|.+.+.++ .|++
T Consensus 660 ~~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~ 737 (758)
T 3ott_A 660 RYTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSN 737 (758)
T ss_dssp GGCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCS
T ss_pred cccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccC
Confidence 3356789999999999999999999999999999998765533 24689999999999999988776 6876
Q ss_pred hhh
Q 006704 291 HEL 293 (634)
Q Consensus 291 ~e~ 293 (634)
++.
T Consensus 738 ~~~ 740 (758)
T 3ott_A 738 RPH 740 (758)
T ss_dssp SCE
T ss_pred ccE
Confidence 543
No 105
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=76.81 E-value=1 Score=39.01 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.8
Q ss_pred CCCceEEecCchhhhhhhh
Q 006704 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
...+|||||||+..+..++
T Consensus 35 ~~~~Ilivdd~~~~~~~l~ 53 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLT 53 (157)
T ss_dssp EECEEEEECSCHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHH
Confidence 4569999999999888754
No 106
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=75.45 E-value=0.6 Score=52.71 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=58.3
Q ss_pred Ce-EEcCCCCchhhhhhcccCCCCCCceEEeecccccCCc-------cccCCCCcccccceEEEEEecCCCCCccchhh
Q 006704 222 QA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNF-------QINDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (634)
Q Consensus 222 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e 292 (634)
+. +.+++.++.+++.|++..|..+....|++.|.+.+.- ....|++|++|.|.+.|.+.+.++ .|++.+
T Consensus 691 ~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 691 EGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp SSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred CccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 44 8899999999999999999999999999999876543 235799999999999999998876 677654
No 107
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=60.87 E-value=8.1 Score=40.61 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=43.2
Q ss_pred hhchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEecc
Q 006704 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (634)
.+++.+..+.+..+...++++.|..+++.+...++.+++++|+++||.-+
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 312 AELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 34455666778889999999999999999999999999999999998765
No 108
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=59.82 E-value=8.3 Score=36.38 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=17.4
Q ss_pred CCCCceEEecCchhhhhhhhh
Q 006704 610 LTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 610 ~~~~~vLvvDD~~~~r~v~~~ 630 (634)
..+.+|||||||+.+|..++.
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~ 147 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLAD 147 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHH
Confidence 467899999999999987553
No 109
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.61 E-value=8.9 Score=37.05 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=16.2
Q ss_pred CCceEEecCchhhhhhhhh
Q 006704 612 GPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 612 ~~~vLvvDD~~~~r~v~~~ 630 (634)
+.+|||||||+.+|.+++-
T Consensus 160 ~~rILvVdD~~~~~~~l~~ 178 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEA 178 (286)
T ss_dssp CCEEEEECCSHHHHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHH
Confidence 4589999999999998653
No 110
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=35.97 E-value=66 Score=33.78 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=40.2
Q ss_pred hchHHHhHHHHHHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEecc
Q 006704 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (634)
+++.+..+....+...++...+..+.+.+....+.+++++++++++.-+
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 3344555566778888888999999999999999999999999998654
No 111
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=35.71 E-value=26 Score=18.95 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=10.9
Q ss_pred HHHHHHHHhhHHHH
Q 006704 57 QFGSFIILCGLTHF 70 (634)
Q Consensus 57 ~~~~f~~~cg~~~~ 70 (634)
+.+.||+-|...|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 45679999998874
No 112
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=34.60 E-value=1e+02 Score=32.89 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhcC---CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC---CCCCCChh------
Q 006704 461 MQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC---GVPPQDIP------ 528 (634)
Q Consensus 461 ~qvl~nLl~NAik~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~---Gi~~~~~~------ 528 (634)
..++.++|.||+-|. ..+.+.|.+...++ +|+|.+-|. |++.+.+.
T Consensus 298 ~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d----------------------riei~npG~l~~~~t~e~~~~~~s~R 355 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWNRSEPIDVRWIELDS----------------------TLIVRSPGGFPAAITSENVLSNRAAR 355 (583)
T ss_dssp HHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT----------------------EEEEEEESCCCTTCCTTSSTTCCCCS
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEecCC----------------------EEEEEcCCCCCCCCCHHHhcCCCCCC
Confidence 567888889998875 34555555441122 467777774 55555432
Q ss_pred --hhhhcccccCCCCCCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecC
Q 006704 529 --LLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 529 --~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f~i~lp~~~ 586 (634)
.|.+-|....- ..+.|-|+.-+.+..+..|.. -.+... .|..|+++||...
T Consensus 356 Np~la~~~~~~~~----~e~~GsGi~~i~~~~~~~g~~~P~~~~~---~~~~~~v~l~~~~ 409 (583)
T 3lmm_A 356 YPALADLYRALGL----VDKQGVGVDRMYQAMIALGHRPPTIEEI---AGPFVETTLVGGR 409 (583)
T ss_dssp CHHHHHHHHHTTC----SCSSHHHHHHHHHHHHHTTCCCCEEEEE---TTTEEEEEEECCS
T ss_pred CHHHHHHHHHhCc----cccCCcHHHHHHHHHHHcCCCCCeEEEc---CCCEEEEEEeCCC
Confidence 12222322221 235688888777777777763 344443 2467888888653
No 113
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=32.54 E-value=2.9e+02 Score=25.16 Aligned_cols=108 Identities=7% Similarity=-0.054 Sum_probs=60.9
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEEeccCC---CCeEEEEEeeccccc---cccccccCChhhHHHhccC
Q 006704 148 MLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 148 ~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 221 (634)
++.+.+....+.+++.... ..+.+.+|.+.+++...... .....+..++.+.+. ........+|.+.....+.
T Consensus 7 ~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~ 85 (237)
T 3szt_A 7 GYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEY 85 (237)
T ss_dssp SHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCC
Confidence 3455666677777777666 88888999999988764331 223333344443321 1223445678888888888
Q ss_pred CeEEcCCCCchhhhhhcccCCCCCCceEEeecccc
Q 006704 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLH 256 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 256 (634)
.+....+......-.+.......+-...+.+|+..
T Consensus 86 ~p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~ 120 (237)
T 3szt_A 86 TPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRG 120 (237)
T ss_dssp SCEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CCEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeC
Confidence 88877654321111111112223344566666643
No 114
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=30.16 E-value=1.8e+02 Score=23.58 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCceEEEEeccCCCCeEEEEEeeccccccccccccCChhhHHHhccCCeEEcCCCCchhhhhhcccCCC
Q 006704 164 KTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV 243 (634)
Q Consensus 164 ~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (634)
....+-+.+.+++ .++| .|. ..+....+.+.....+. ++ .....+++.+++.....+... .... ....
T Consensus 5 ~~~AeiI~~~~~~-aV~I--tD~--~~ilA~~G~g~~~~~~~--~i-s~~~~~~i~~~k~~~~~~~~~---~~~~-~~~~ 72 (123)
T 2w1r_A 5 KEYADALYDSLGH-SVLI--CDR--DVYIAVSGSSKKDYLNK--SI-SEMLERTMDQRSSVLESDAKS---VQLV-NGID 72 (123)
T ss_dssp HHHHHHHHHHHCS-EEEE--ECS--SBEEEEESSCHHHHBTC--BB-CHHHHHHHHHCSCEEESSCEE---EESB-TTCE
T ss_pred HHHHHHHHHHHCC-eEEE--EcC--ccEEEEEecChhhcCCC--cc-CHHHHHHHHcCCEEEEcCCcc---cccc-CCCC
Confidence 4455667777777 4443 332 22322333332222222 34 556788999999988854332 1100 0111
Q ss_pred CCCceEEeecccccCCccccCCCCcccccceEEEEEecCCCCCccchhhhHHHHHHHHHHH
Q 006704 244 PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (634)
Q Consensus 244 ~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a 304 (634)
.+....+.+|+... +..+|++.+. ...+.+++-+.++.+.+|.-++
T Consensus 73 ~~~~s~ii~PI~~~--------------g~viG~i~l~-~~~~~~~~~~~~la~gla~lls 118 (123)
T 2w1r_A 73 EDMNSYTVGPIVAN--------------GDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLA 118 (123)
T ss_dssp EEESEEEEEEEEET--------------TEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEEEEEEC--------------CEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHH
Confidence 23466777776432 2346666555 3334588889888888777554
No 115
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=29.72 E-value=2.9e+02 Score=24.24 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEE
Q 006704 420 QIVLREVIKLIKPVASCKKLSMTL 443 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~ 443 (634)
..++.+++...-.......+.+.+
T Consensus 132 ~~il~nll~Na~k~~~~~~i~i~~ 155 (218)
T 3ehh_A 132 SMCLKEAVTNVVKHSQAKTCRVDI 155 (218)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345555555554444333444444
No 116
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=29.55 E-value=2.5e+02 Score=24.92 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhHHHHhHHhhhcc---ch---hhHHHHHH--HH
Q 006704 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV---HS---KAVAVVMT--IA 90 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~~~~~~~~~~~---~~---~~~~~~~~--~~ 90 (634)
++|.+.|.+++.++..+. .+|.++++--...++++-...=.++....|.+.-+.+|- |. -+.|.+.. ..
T Consensus 88 p~q~lldy~laf~~~Gla---G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~ 164 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSLGIA---GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGIS 164 (192)
T ss_dssp HHHHHHHHTHHHHHGGGG---GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHH
Confidence 458888988888777765 334444332222333322222234555667777555552 21 11222221 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 006704 91 KMACAFVSCITALMLVHIIPDLLS 114 (634)
Q Consensus 91 ~~~~a~vs~~~a~~l~~~~p~~l~ 114 (634)
-...+++++.....+++-+|+.+.
T Consensus 165 ~l~~~ii~~iv~~lL~k~~~~~~~ 188 (192)
T 3rlb_A 165 GILTAIAAFVILIIFVKKFPKLFI 188 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 334445555555566666666554
No 117
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=27.68 E-value=24 Score=33.23 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.8
Q ss_pred CCCceEEecCchhhhhhhh
Q 006704 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
...+||||||++.+|..++
T Consensus 123 ~~~~ILivDD~~~~~~~l~ 141 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTM 141 (259)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHH
Confidence 4579999999999988754
No 118
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.85 E-value=1.1e+02 Score=20.03 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=9.3
Q ss_pred HHHhhHH-HHHHHHHHhcCC
Q 006704 30 LAYFSIP-VELIYFVQKSAF 48 (634)
Q Consensus 30 ~a~~~i~-~~~~~~~~~~~~ 48 (634)
++.+.|- +.++||++||+.
T Consensus 21 v~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhHh
Confidence 4444443 444555666543
Done!