BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006705
         (634 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/632 (77%), Positives = 558/632 (88%), Gaps = 1/632 (0%)

Query: 3    RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYD 62
            RPK+   + S+  F++Q++ + +FP N  +LKTLCSN QL +AL+EM   GLE+ F+ YD
Sbjct: 423  RPKQVLSSISN-PFSRQRILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYD 481

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++L  C++Q  +R GQRVHAHMIKTCY PPVYLRTRLIV YNKC CL DAR++ DEM ER
Sbjct: 482  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            NVVSWTAMIS YSQ+ ++ EAL+LF+ ML S T PNEFTFATVLTSC  + GF+LG+QIH
Sbjct: 542  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 601

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            SL+IK++FESHI+VGSSLLDMYAKAG+I EAR VF+ LPERDVVSCTAIISGYAQLGLDE
Sbjct: 602  SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 661

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            EA++LFR+LQ EGM SNYVTYASVLTALSGLAAL HG+QVHSHVLR ++P YVVLQNSLI
Sbjct: 662  EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLI 721

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMYSKCGSLTYSRR+FD+M ERTVISWNAMLVGYSKHG+GRE VELF LM+EENKVKPDS
Sbjct: 722  DMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDS 781

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            VT+LAVLSGCSHGGMEDRGL +F+E+V+ KDGFEPEIEHYGCVVD+ GRAGRV EA EFI
Sbjct: 782  VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 841

Query: 423  KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            K MPFEPTAAI GSLLGACRVH NV IGEFV +RL+EIE ENAGNYVILSNLYASAGRW+
Sbjct: 842  KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWD 901

Query: 483  DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            DV  VRELMKEKAV K+PGRSWIELDQ LHTFHASDRSHP +EE+ AKV++LS+K KEAG
Sbjct: 902  DVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAG 961

Query: 543  YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
            YVP++SCVLYDVD+EQKEK+L GHSEKLAL FGLI TP G P+R+IKNLRICVDCHNFAK
Sbjct: 962  YVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAK 1021

Query: 603  FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            F+S+VYGR+VSLRDKNRFHHIV GTCSCGDYW
Sbjct: 1022 FLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/623 (75%), Positives = 546/623 (87%), Gaps = 5/623 (0%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
           S  TF++Q     SF P+P NLKTLCS+GQL +AL++MA LG E++FE YDT+LN CV+Q
Sbjct: 49  SRYTFSRQ----ISFSPSP-NLKTLCSSGQLKEALLQMAILGREVKFEGYDTILNECVSQ 103

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           R +R GQRVH HMIKTCY P VYLRTRLIV YNKC+CL DAR+MFDEM ++NVVSWTAMI
Sbjct: 104 RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMI 163

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           SAYSQ+  +FEALNLF+ MLRSDTEPN FTFAT+LTSC G+ GFE G+QIHS+ IK N+E
Sbjct: 164 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 223

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           SH++VGSSLLDMYAK+GRI +A GVF CLPERDVV+CTAIISGYAQ+GLDEEA++LFR+L
Sbjct: 224 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 283

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           Q+EGM SN VTYASVLTALSGLAAL HGKQVHSHVLR    SYVVL NSLIDMYSKCG++
Sbjct: 284 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNV 343

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
            Y+RR+FD+M ERT ISWNAMLVGYSKHGM REV+ELF LMREENKVKPDS+TYLAVLSG
Sbjct: 344 CYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG 403

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSHG +ED GL +F+ +V+ KDG EP+I HYGCVVD+LGRAGRV EA +FIK MPF PTA
Sbjct: 404 CSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTA 463

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           AI GSLLG+CRVH +V+IG  VGQ+L+E+EPENAGNYVILSNLYASAG+WED+  +R+LM
Sbjct: 464 AIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLM 523

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           +EKAVTK+PGRSW+ELDQI+HTFHASD +HP REE++ KVK+LS+KFKE GYVPD+SCVL
Sbjct: 524 QEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVL 583

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           YDVDEEQKEKVLLGHSEKLAL FGLI TPEG  IRVIKNLRICVDCH+FAKFVS++Y R 
Sbjct: 584 YDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYART 643

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           V LRDKNRFH+IV G CSCGDYW
Sbjct: 644 VILRDKNRFHNIVGGVCSCGDYW 666


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/623 (75%), Positives = 545/623 (87%), Gaps = 5/623 (0%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
           S  TF++Q     SF P+P NLKTLCS+GQL +AL++MA LG E++FE YD++LN CV+Q
Sbjct: 21  SRYTFSRQ----ISFSPSP-NLKTLCSSGQLKEALLQMAILGREVKFEGYDSILNECVSQ 75

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           R +R GQRVH HMIKTCY P VYLRTRLIV YNKC+CL DAR MFDEM +RNVVSWTAMI
Sbjct: 76  RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMI 135

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           SAYSQ+  +FEALNLF+ MLRSDTEPN FTFAT+LTSC G+ GFE G+QIHS+ IK N+E
Sbjct: 136 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 195

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           SH++VGSSLLDMYAK+GRI +A GVF CLPERDVV+CTAIISGYAQ+GLDEEA++LFR+L
Sbjct: 196 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 255

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           Q+EGM SN VTYASVLTALSGLAAL HGKQVHSHVLR    SYVVL NSLIDMYSKCG++
Sbjct: 256 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNV 315

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
            Y+RR+FD+M ERT ISWNAMLVGYSKHGM REV+ELF LMREENKVKPDS+TYLAVLSG
Sbjct: 316 CYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG 375

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSHG +ED GL +F+ +V+ KDG EP+I HYGCVVD+LGRAGRV EA +FIK MPF PTA
Sbjct: 376 CSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTA 435

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           AI GSLLG+CRVH +V+IG  VGQ+L+E+EPENAGNYVILSNLYASAG+WED+  +R+LM
Sbjct: 436 AIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLM 495

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           +EKAVTK+PGRSW+ELDQI+HTFHASD +HP REE++ KVK+LS+KFKE GYVPD+SCVL
Sbjct: 496 QEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVL 555

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           YDVDEEQKEKVLLGHSEKLAL FGLI TPEG  IRVIKNLRICVDCH+FAKFVS++Y R 
Sbjct: 556 YDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYART 615

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           V LRDKNRFH+IV G CSCGDYW
Sbjct: 616 VILRDKNRFHNIVGGVCSCGDYW 638


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/586 (79%), Positives = 525/586 (89%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GLE+ F+ YD++L  C++Q  +R GQRVHAHMIKTCY PPVYLRTRLIV YNKC C
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR++ DEM ERNVVSWTAMIS YSQ+ ++ EAL+LF+ ML S T PNEFTFATVLTS
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C  + GF+LG+QIHSL+IK++FESHI+VGSSLLDMYAKAG+I EAR VF+ LPERDVVSC
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQLGLDEEA++LFR+LQ EGM SNYVTYASVLTALSGLAAL HG+QVHSHVLR
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            ++P YVVLQNSLIDMYSKCGSLTYSRR+FD+M ERTVISWNAMLVGYSKHG+GRE VEL
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F LM+EENKVKPDSVT+LAVLSGCSHGGMEDRGL +F+E+V+ KDGFEPEIEHYGCVVD+
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
            GRAGRV EA EFIK MPFEPTAAI GSLLGACRVH NV IGEFV +RL+EIE ENAGNY
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSNLYASAGRW+DV  VRELMKEKAV K+PGRSWIELDQ LHTFHASDRSHP +EE+ 
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVF 480

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           AKV++LS+K KEAGYVP++SCVLYDVD+EQKEK+L GHSEKLAL FGLI TP G P+R+I
Sbjct: 481 AKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRII 540

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRICVDCHNFAKF+S+VYGR+VSLRDKNRFHHIV GTCSCGDYW
Sbjct: 541 KNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 164/296 (55%), Gaps = 12/296 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   G       + T+L +C +    + G+++H+ +IKT +   +++ + L+  Y K
Sbjct: 99  FVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAK 158

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              + +AR++FD + ER+VVS TA+IS Y+Q     EAL+LF R+ R     N  T+A+V
Sbjct: 159 AGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASV 218

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           LT+ +G    + G+Q+HS ++++    ++ + +SL+DMY+K G +  +R +F+ +PER V
Sbjct: 219 LTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTV 278

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHS 284
           +S  A++ GY++ GL  EA+ELF+ ++ E  +  + VT+ +VL+  S       G ++  
Sbjct: 279 ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 338

Query: 285 HVLRF------EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            ++        EI  Y      ++D++ + G +  +      M  E T   W ++L
Sbjct: 339 EMVNQKDGFEPEIEHY----GCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 390


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/586 (79%), Positives = 516/586 (88%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MA  G E++F+ Y+ LLN CVN+R +R GQRVHAHMIKTCY PPVYL TRLI+ Y KCEC
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR +FDEMRERNVVSWTAMIS YSQ+  + EAL+LF++MLRSDTEPNEFTFATVL+S
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C G  GFELG+QIHS I K N+E+HI+VGSSLLDMYAKAGRIHEARGVFECLPERDVVSC
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQLGLDEEA+ELF +LQ EGM SNYVTYAS+LTALSGLAAL HGKQVHSHVLR
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+P YVVLQNSLIDMYSKCG+L Y+R++F+NM  RTVISWNAMLVGYSKHG G EVV+L
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKL 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F LMREENKVKPDSVT+LAVLSGCSHGG+ED+GL +F E+++  D  E  IEHYGCV+D+
Sbjct: 301 FKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDL 360

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGRV EA E IK MPFEPTAAI GSLLGACRVH N +IGEFVG RL+EIEPENAGNY
Sbjct: 361 LGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNY 420

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSNLYASAGRWEDV  VRELM EKAV K+PGRSWIELDQ +HTF+ASDRSHP REE+ 
Sbjct: 421 VILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVF 480

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            KV++L VKFKE+GYVPD SCVLYDVDEEQKEK+LLGHSEKLAL FGLI T EG P+RVI
Sbjct: 481 LKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVI 540

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRICVDCHNFAKFVSKVYGR+VS+RDKNRFHH+  G CSCGDYW
Sbjct: 541 KNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/618 (74%), Positives = 534/618 (86%), Gaps = 1/618 (0%)

Query: 18  QQQLTVPSFPPNPQN-LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           Q+   + +FP N  + L     + +L +AL+ MA  GL+  F++Y+T+LN C+ +R +R 
Sbjct: 17  QKPRLLSTFPSNSHHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIRE 76

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           GQRVHAHMIKT Y P VYLRTRLIVFY KC+ L DAR +FD M ERNVVSWTAMISAYSQ
Sbjct: 77  GQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQ 136

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
           + ++ +AL+LF++MLRS TEPNEFTFATVLTSC G+ GF LG+QIHS IIK N+E+H+YV
Sbjct: 137 RGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYV 196

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           GSSLLDMYAK G+IHEARG+F+CLPERDVVSCTAIISGYAQLGLDEEA+ELFR+LQ EGM
Sbjct: 197 GSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGM 256

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            SNYVTY SVLTALSGLAAL HGKQVH+H+LR E+PSYVVLQNSLIDMYSKCG+LTY+RR
Sbjct: 257 QSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARR 316

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD + ERTVISWNAMLVGYSKHG GREV+ELFNLM +ENKVKPDSVT LAVLSGCSHGG
Sbjct: 317 IFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGG 376

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           +ED+G+ +F+++   K   +P+ +HYGCVVDMLGRAGRV  A EF+K MPFEP+AAI G 
Sbjct: 377 LEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGC 436

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LLGAC VH N+DIGEFVG +L++IEPENAGNYVILSNLYASAGRWEDV  +R LM +KAV
Sbjct: 437 LLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
           TK+PGRSWIELDQ+LHTFHASD SHP REE+SAKV++LS +FKEAGYVPD+SCVL+DVDE
Sbjct: 497 TKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDE 556

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           EQKEK+LL HSEKLALTFGLI TPE  PIRVIKNLRICVDCHNFAK+ SK+YGR+VSLRD
Sbjct: 557 EQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRD 616

Query: 617 KNRFHHIVEGTCSCGDYW 634
           KNRFH IV G CSCGDYW
Sbjct: 617 KNRFHRIVGGKCSCGDYW 634


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/635 (72%), Positives = 521/635 (82%), Gaps = 21/635 (3%)

Query: 21  LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           LT   FP N + L T  ++  L + L++MA  G  M+FE Y+ +LN CVN+R  R GQRV
Sbjct: 206 LTRHVFPSNSRTLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRV 265

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           HAHMIKT Y P V+LRTRLIV Y KC+ L DA  +FDEM ERNVVSWTAMISAYSQ+ ++
Sbjct: 266 HAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYA 325

Query: 141 FEALNLFIRMLRSD---------------------TEPNEFTFATVLTSCAGAFGFELGK 179
            +ALNLF   ++                       TEPNEFTFATVLTSC  + GF LG+
Sbjct: 326 SQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGR 385

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIHSLIIK N+E H++VGSSLLDMYAK G+IHEAR VFECLPERDVVSCTAIISGYAQLG
Sbjct: 386 QIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG 445

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           LDEEA+ELFR+LQ EGM SNYVTY  VLTALSGLAAL  GKQVH+HVLR EIPS+VVLQN
Sbjct: 446 LDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQN 505

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLIDMYSKCG+LTYSRR+FD M ERTVISWNAMLVGYSKHG GREV++LF LMREE KVK
Sbjct: 506 SLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVK 565

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PDSVT LAVLSGCSHGG+ED+GL +F+++   K   EP++EHYGCVVD+LGR+GRV EA 
Sbjct: 566 PDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAF 625

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFIK MPFEPTAAI GSLLGACRVH NVDIGEF GQ+L+EIEP NAGNYVILSNLYASAG
Sbjct: 626 EFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAG 685

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWEDV+ +R+LM +K VTK+PGRS IELDQ+LHTFHASDRSHP REE+  KVK+LS  FK
Sbjct: 686 RWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFK 745

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E GYVPD+SCVL+DVDEEQKEK+LLGHSEKLAL+FGLI +P   PIRVIKNLRICVDCHN
Sbjct: 746 EVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHN 805

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           FAK++SKVYGR+VSLRDKNRFH IV G CSC DYW
Sbjct: 806 FAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/627 (72%), Positives = 519/627 (82%), Gaps = 8/627 (1%)

Query: 16  FTQQQLTVPSFPPNPQN--------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
           F   +L   SF  +P N        +  LCSNG+L +AL+EMA LG EM F  YD LLNA
Sbjct: 2   FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNA 61

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C+++R LR GQRVHAHMIKT Y P  YLRTRL++FY KC+CL DARK+ DEM E+NVVSW
Sbjct: 62  CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           TAMIS YSQ  HS EAL +F  M+RSD +PNEFTFATVLTSC  A G  LGKQIH LI+K
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
            N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F +L  EGM  NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSK
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG+L+Y+RR+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LA
Sbjct: 302 CGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 361

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VLSGCSHG MED GL +F  +V  + G +P  EHYGC+VDMLGRAGR+ EA EFIK MP 
Sbjct: 362 VLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 421

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
           +PTA +LGSLLGACRVH +VDIGE VG+RL+EIEPENAGNYVILSNLYASAGRW DV  V
Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNV 481

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R +M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+
Sbjct: 482 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDL 541

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           SCVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK  SKV
Sbjct: 542 SCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKV 601

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 FEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/626 (71%), Positives = 524/626 (83%), Gaps = 7/626 (1%)

Query: 16  FTQQQLTVPSFPPNPQN-------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNAC 68
           F   +L   SF  +P +       +  LCSNG+L +AL+EM  LG E+ F  YD LLNAC
Sbjct: 2   FNLMRLIHRSFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNAC 61

Query: 69  VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
           +++R LR GQRVHAHMIKT Y P  YLRTRL++FY KC+CL DARK+ DEM E+NVVSWT
Sbjct: 62  LDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 121

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           AMIS YSQ  HS EAL++F  M+RSD +PNEFTFATVLTSC  A G  LGKQIH LI+K 
Sbjct: 122 AMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
           N++SHI+VGSSLLDMYAKAG+I EAR +FECLPERDVVSCTAII+GYAQLGLDEEA+E+F
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           ++LQ EGM  NYVTYAS+LTALSGLA L HGKQ H HVLR E+P Y VLQNSLIDMYSKC
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G+L+Y++R+FDNM ERT ISWNAMLVGYSKHG+GREV+ELF LMR+E +VKPD+VT LAV
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           LSGCSHG MED GL+++  +V  + G +P+ EHYGC+VDMLGRAGR+ EA EFIK MP +
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           PTA +LGSLLGACRVH +VDIGE+VG RL+EIEPENAGNYVILSNLYASAGRWEDV  VR
Sbjct: 422 PTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVR 481

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
            +M +KAVTK+PGRSWI+ +Q LH FHA+DR+HP REE+ AK+K++S+K K+AGYVPD+S
Sbjct: 482 AMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDIS 541

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
           CVLYDVDEEQKEK+LLGHSEKLALTFGLI T EG PIRV KNLRICVDCHNFAK  SKV+
Sbjct: 542 CVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVF 601

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
            R+VSLRDKNRFH IV+G CSCGDYW
Sbjct: 602 EREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/601 (70%), Positives = 499/601 (83%), Gaps = 1/601 (0%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           + T   +  L +ALI+M   GL+M  ++Y+T+LN CV++R  + GQRVHAH IKT Y P 
Sbjct: 1   MSTHSHDTHLREALIQMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPC 60

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           VYL TRLIVFY KC+ L DAR + +EM ERNVVSWTAMISAYSQ+ ++ +AL++ +++LR
Sbjct: 61  VYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILR 120

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S TE NEFTFAT+        GF L + IHSLIIK NF++H+YVGSSLLDMYAK G+IHE
Sbjct: 121 SGTESNEFTFATMPYFMYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHE 180

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           ARG+FECLPERDVVSCTAIISGYAQL LDEE +ELF +LQ EGM SNYVTY SVLTALSG
Sbjct: 181 ARGIFECLPERDVVSCTAIISGYAQLDLDEE-LELFLRLQREGMXSNYVTYTSVLTALSG 239

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LAAL HGKQVH+H+L  E+PS+V+LQNSLIDMYSKCG+LTY+RR+FD M ERTVISWNAM
Sbjct: 240 LAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAM 299

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           LVGYSKHG  REV+ELFNLMR+ENKVKPDSVT LAVLSGCSHGG ED+G+ +F+++   K
Sbjct: 300 LVGYSKHGERREVLELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGK 359

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              +P+ + YGCVVD+LGRAGRV EA EFIK +PFEP+AAI G LLGAC VH N+ IGEF
Sbjct: 360 ISVQPDTKRYGCVVDLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEF 419

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           VG RL+E EPENAGNYVILSNLYASAGRWEDVT +R LM +KAVTK+PGRS IE+DQ+L 
Sbjct: 420 VGHRLLEFEPENAGNYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQ 479

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
           TFH SD SHP REE+SAK ++L V+FKEAGY PD+SCVL+DVDEEQKEK+LL HSEKLAL
Sbjct: 480 TFHPSDCSHPRREEVSAKXQELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLAL 539

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           +FGLI TPE   I VIKNLRICVDCHNFAK++SK+Y R+VSLRDKN FH IV   CSCGD
Sbjct: 540 SFGLIATPESVLICVIKNLRICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGD 599

Query: 633 Y 633
           Y
Sbjct: 600 Y 600


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/586 (64%), Positives = 473/586 (80%), Gaps = 3/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           +A  G + RF +YD  + ACV ++ L  G++VHAHM+K  YRPPVYL TRLI+ Y +C  
Sbjct: 32  LAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGA 91

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR + D M ERNVVSWTAMIS YSQ     EAL LFIRMLR+  + NEFT ATVLTS
Sbjct: 92  LDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTS 151

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C      +  +Q+HSL++K+NFESH++VGSSLLDMY K+G I EAR VF+ LPERD VSC
Sbjct: 152 CPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSC 211

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQLGLD+EA++LFR+L   GM  NYVT+ ++LT+LSGLA+L +GKQVH  +LR
Sbjct: 212 TAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILR 271

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+P ++VLQNSLIDMYSKCG L YSRRVFDNM +R+ ISWNAML+GY +HG+G+EVV+L
Sbjct: 272 KELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQL 331

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M EE  VKPDSVT LAVLSGCSHGG+ D GL +F  IV  ++     I HYGCV+D+
Sbjct: 332 FRTMTEE--VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAV-IHIGHYGCVIDL 388

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G++ +AL+ I++MPFEPT AI GSLLGACRVH NV +GE V Q+L+++EP NAGNY
Sbjct: 389 LGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNY 448

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSN+YA+AG W+DV RVR+LM E  VTK+P +SWI LD+++HTFH+S+R HP +++++
Sbjct: 449 VILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDIN 508

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           AK+K++ V  K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP G  I+V+
Sbjct: 509 AKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVM 568

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRICVDCHNFAKFVSKVYGR++SLRDKNRFH + +G C+CGDYW
Sbjct: 569 KNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/586 (63%), Positives = 467/586 (79%), Gaps = 3/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MA  G   RF EY+  + AC+ +R L  G++VHA MI   YRP V+L TRL+  Y +C  
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR + D M ER+VVSWT MIS YSQ     EAL+LFI+MLR+   PNE+T ATVLTS
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+G      GKQ+HSL++K+NFESH++VGSSLLDMYAK+  I EAR VF+ LPERDVVSC
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQ GLDEEA++LFR+L  EGM  N+VT+ +++TALSGLA+L +GKQVH+ +LR
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+P +V LQNSLIDMYSKCG L YSRRVFDNM ER+V+SWNAML+GY +HG+G EV+ L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  + +E  VKPDSVT LAVLSGCSHGG+ D GL +F  +V  +        HYGC++D+
Sbjct: 301 FKDLHKE--VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL-LHTGHYGCIIDL 357

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+GR+ +AL  I+NMPFE T +I GSLLGACRVH NV +GE V Q+L+E+EPENAGNY
Sbjct: 358 LGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNY 417

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSN+YA+AG W+DV +VR+LM EK VTK+PG+SWI LD+++HTFH+S+R HP +++++
Sbjct: 418 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 477

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           AK+K++ V  K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP G  IRV+
Sbjct: 478 AKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVM 537

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRICVDCHNFAKFVSKVY R++SLRDKNRFH +  G C+CGDYW
Sbjct: 538 KNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/586 (63%), Positives = 467/586 (79%), Gaps = 3/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MA  G   RF EY+  + AC+ +R L  G++VHA MI   YRP V+L TRL+  Y +C  
Sbjct: 33  MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 92

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR + D M ER+VVSWT MIS YSQ     EAL+LFI+MLR+   PNE+T ATVLTS
Sbjct: 93  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+G      GKQ+HSL++K+NFESH++VGSSLLDMYAK+  I EAR VF+ LPERDVVSC
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 212

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQ GLDEEA++LFR+L  EGM  N+VT+ +++TALSGLA+L +GKQVH+ +LR
Sbjct: 213 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 272

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+P +V LQNSLIDMYSKCG L YSRRVFDNM ER+V+SWNAML+GY +HG+G EV+ L
Sbjct: 273 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 332

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  + +E  VKPDSVT LAVLSGCSHGG+ D GL +F  +V  +        HYGC++D+
Sbjct: 333 FKDLHKE--VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL-LHTGHYGCIIDL 389

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+GR+ +AL  I+NMPFE T +I GSLLGACRVH NV +GE V Q+L+E+EPENAGNY
Sbjct: 390 LGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNY 449

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSN+YA+AG W+DV +VR+LM EK VTK+PG+SWI LD+++HTFH+S+R HP +++++
Sbjct: 450 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 509

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           AK+K++ V  K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP G  IRV+
Sbjct: 510 AKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVM 569

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRICVDCHNFAKFVSKVY R++SLRDKNRFH +  G C+CGDYW
Sbjct: 570 KNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/580 (61%), Positives = 448/580 (77%), Gaps = 5/580 (0%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           RF +YD  +  CV +R LR G++VHA M+   YRP +YL TRL++ Y +C  L DA  + 
Sbjct: 34  RFHDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVL 93

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           D M ERNVVSWTAMIS YSQ     EA +LFI MLR+  EPNEFT A+VLTSC G+ G  
Sbjct: 94  DGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIH 153

Query: 177 LG--KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
               KQ+H+  IK NFE H++VGSSLLDMYA++  I EAR VF+ LP RDVVS T I+SG
Sbjct: 154 QHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSG 213

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y +LGLDEEA+ LFR+L  EGM  N VT++ +L ALSGL+++ +GKQVH  +LR E+P +
Sbjct: 214 YTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFF 273

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + LQNSLIDMYSKCG L YSRRVFDNM ER+V+SWNAML+GY +HGM  EVV+LF  M +
Sbjct: 274 MALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCD 333

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             KVKPDSVT LAVL G SHGG+ D GL +F  IV  +       +HYGCV+D+LGR+G+
Sbjct: 334 --KVKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTL-LNTQHYGCVIDLLGRSGQ 390

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + +AL  I+ MPF+PT AI GSLLGACRVH NV +GEFV Q+L +IEPENAGNYVILSN+
Sbjct: 391 LEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNI 450

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA+A  W+DV R+R+LM +K V K+PGRSW+ LD+++HTFH+S+R HP +E+++ K+ ++
Sbjct: 451 YAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEI 510

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
               K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP    I+V+KNLRIC
Sbjct: 511 YAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRIC 570

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VDCHNFAKFVSKVYGR++SLRDKNRFH I EG C+CGDYW
Sbjct: 571 VDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/578 (60%), Positives = 440/578 (76%), Gaps = 23/578 (3%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           RF +YD  +  CV +R LR G++VHA M+   YRP +YL TRL++ Y +C  L DAR + 
Sbjct: 34  RFHDYDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVL 93

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           D M ERNVVSWTAMIS YSQ     +A  LFI MLR+                    G  
Sbjct: 94  DGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRA--------------------GIH 133

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             KQ+H+  +K+NFE H++VGSSLLDMYAK+  I EAR VF+ LP RDVVS TAI+SGY 
Sbjct: 134 QVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYT 193

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           QLGLDEEA++LFR L  EGM  N VT+ ++L ALSGL+++ +GKQVH  +LR E+P ++ 
Sbjct: 194 QLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMA 253

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           LQNSLIDMYSKCG L YSRRVFD+M ER+V+SWNAML+GY +HG+  EVV+LF  M +E 
Sbjct: 254 LQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE- 312

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            VKPDSVT LAVLSG SHGG+ D GL +F  IV  +       EHYGCV+D+LGR+G++ 
Sbjct: 313 -VKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTL-LNTEHYGCVIDLLGRSGQLQ 370

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           +AL  I+ MPF+PT AI GSLLGACRVH NV +GEFV Q+L++IEPENAGNYVILSN+YA
Sbjct: 371 KALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYA 430

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           +AG W+DV RVR+LM +K V K+PGRSW+ LD+++HTFH+ +R HP +E+++AK+K++ V
Sbjct: 431 AAGMWKDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYV 490

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
             K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP    I+V+KNLRICVD
Sbjct: 491 AIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVD 550

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CHNFAKFVSKVYGR++SLRDKNRFH I EG C+CGDYW
Sbjct: 551 CHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 588


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/538 (62%), Positives = 424/538 (78%), Gaps = 3/538 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MA  G   RF EY+  + AC+ +R L  G++VHA MI   YRP V+L TRL+  Y +C  
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR + D M ER+VVSWT MIS YSQ     EAL+LFI+MLR+   PNE+T ATVLTS
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+G      GKQ+HSL++K+NFESH++VGSSLLDMYAK+  I EAR VF+ LPERDVVSC
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TAIISGYAQ GLDEEA++LFR+L  EGM  N+VT+ +++TALSGLA+L +GKQVH+ +LR
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+P +V LQNSLIDMYSKCG L YSRRVFDNM ER+V+SWNAML+GY +HG+G EV+ L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  + +E  VKPDSVT LAVLSGCSHGG+ D GL +F  +V  +        HYGC++D+
Sbjct: 301 FKDLHKE--VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL-LHTGHYGCIIDL 357

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+GR+ +AL  I+NMPFE T +I GSLLGACRVH NV +GE V Q+L+E+EPENAGNY
Sbjct: 358 LGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNY 417

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VILSN+YA+AG W+DV +VR+LM EK VTK+PG+SWI LD+++HTFH+S+R HP +++++
Sbjct: 418 VILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDIN 477

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           AK+K++ V  K AG+VPD+SCVL+DVD+EQKE++LLGHSEKLA+TFGL+ TP G  IR
Sbjct: 478 AKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535


>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 818

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/377 (74%), Positives = 319/377 (84%)

Query: 19  QQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           +Q  + S PPN + L +LCS G+L +AL EMA  GLEM+F+ Y+TLLN CVN + +R GQ
Sbjct: 436 RQFYLSSVPPNQRTLNSLCSQGRLQEALFEMACQGLEMKFDGYNTLLNECVNNKAIREGQ 495

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           RVHAH+IKT Y P VYLRTRLIVFY KC+ L DAR +FDEM ERNVVSWTAMIS YS++ 
Sbjct: 496 RVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYSRRG 555

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
            +FE L+LF+RMLRSD EPNEFT ATVLTSC  A G ELG+QIHSLIIK N++SHI+VGS
Sbjct: 556 FAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGS 615

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SLLDMYAKAGRI EAR VFE LPERDVVSCTAIISGYAQLGLDEEA+ELFR+L+ EG+ S
Sbjct: 616 SLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSS 675

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N VTYASVLT+LSGLAAL HGKQVHSHVLR E+P YVVLQNS+IDMYSKCGSL Y+RR+F
Sbjct: 676 NCVTYASVLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIF 735

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           D+M ERTVISWNAMLVGY KHGMGREVVELF LMR ENKVKPDSVT LAVLSGCSHGG E
Sbjct: 736 DSMPERTVISWNAMLVGYGKHGMGREVVELFKLMRTENKVKPDSVTILAVLSGCSHGGFE 795

Query: 379 DRGLAVFHEIVDCKDGF 395
           D+GL +F E++  +  F
Sbjct: 796 DKGLEIFDEMLKGQTKF 812



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 5/182 (2%)

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDM 304
           E   ++  +G+   +  Y ++L       A+  G++VH+H+++ + +PS V L+  LI  
Sbjct: 461 EALFEMACQGLEMKFDGYNTLLNECVNNKAIREGQRVHAHIIKTYYLPS-VYLRTRLIVF 519

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KC  L  +R VFD MSER V+SW AM+ GYS+ G   E + LF  M   + ++P+  T
Sbjct: 520 YTKCDLLMDARHVFDEMSERNVVSWTAMISGYSRRGFAFETLHLFVRMLRSD-IEPNEFT 578

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
              VL+ C+     + G  +   I+ C   ++  I     ++DM  +AGR+ EA    ++
Sbjct: 579 LATVLTSCTDASGSELGRQIHSLIIKCN--YDSHIFVGSSLLDMYAKAGRILEARMVFES 636

Query: 425 MP 426
           +P
Sbjct: 637 LP 638


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/572 (44%), Positives = 387/572 (67%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LLNA  N   L+ GQ+VH  + K        + T L+  Y KC  +S A+ +FD++ E+
Sbjct: 202 SLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEK 261

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV+WT +I+ Y+Q+     AL L  +M +++  PN+ T+ ++L  C      E GK++H
Sbjct: 262 NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH 321

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II+S +   I+V ++L+ MY K G + EAR +F  LP RDVV+ TA+++GYAQLG  +
Sbjct: 322 RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHD 381

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI+LFR++Q +G+  + +T+ S LT+ S  A L  GK +H  ++       V LQ++L+
Sbjct: 382 EAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALV 441

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY+KCGS+  +R VF+ MSER V++W AM+ G ++HG  RE +E F  M+++  +KPD 
Sbjct: 442 SMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG-IKPDK 500

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT+ +VLS C+H G+ + G   F  +     G +P +EHY C VD+LGRAG + EA   I
Sbjct: 501 VTFTSVLSACTHVGLVEEGRKHFRSMY-LDYGIKPMVEHYSCFVDLLGRAGHLEEAENVI 559

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MPF+P  ++ G+LL ACR+H +V+ GE   + +++++P++ G YV LSN+YA+AGR+E
Sbjct: 560 LTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYE 619

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           D  +VR++M+++ V K+PG+SWIE+D  +H FH  D+SHP  +E+ A++ +L+ + KE G
Sbjct: 620 DAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQG 679

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD   VL+DVDEEQK + L  HSE+LA+T+GL+ TP G PIR++KNLR+C DCH  +K
Sbjct: 680 YVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASK 739

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SKV GR++  RD +RFHH V+G CSCGD+W
Sbjct: 740 FISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 236/419 (56%), Gaps = 7/419 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMI 85
           N  ++  LC  G+L +AL  + T+   G  +  + +  LL  C   R+L  G+ VHA ++
Sbjct: 64  NSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAIL 123

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K+  +P  YL   L+  Y KC  L+DAR++FD +R+RN+VSWTAMI A+     + EA  
Sbjct: 124 KSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYK 183

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            +  M  +  +P++ TF ++L +       ++G+++H  I K+  E    VG+SL+ MYA
Sbjct: 184 CYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYA 243

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G I +A+ +F+ LPE++VV+ T +I+GYAQ G  + A+EL  K+Q   +  N +TY S
Sbjct: 244 KCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTS 303

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           +L   +   AL HGK+VH ++++      + + N+LI MY KCG L  +R++F ++  R 
Sbjct: 304 ILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRD 363

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V++W AM+ GY++ G   E ++LF  M+++  +KPD +T+ + L+ CS       G ++ 
Sbjct: 364 VVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG-IKPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            ++V    G+  ++     +V M  + G + +A   + N   E       +++  C  H
Sbjct: 423 QQLVHA--GYSLDVYLQSALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQH 478



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 158/275 (57%), Gaps = 2/275 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L  C     L  G++VH ++I++ Y   +++   LI  Y KC  L +ARK+F ++ 
Sbjct: 301 YTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VV+WTAM++ Y+Q     EA++LF RM +   +P++ TF + LTSC+     + GK 
Sbjct: 361 HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKS 420

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  ++ + +   +Y+ S+L+ MYAK G + +AR VF  + ER+VV+ TA+I+G AQ G 
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGR 480

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQN 299
             EA+E F +++ +G+  + VT+ SVL+A + +  +  G K   S  L + I   V   +
Sbjct: 481 CREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 540

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAML 333
             +D+  + G L  +  V   M  +   S W A+L
Sbjct: 541 CFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALL 575



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 3/203 (1%)

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D ++ +  +S   + G  +EA+ +   + ++G       +  +L   + L +L  G++VH
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           + +L+  I     L+N+L+ MY+KCGSLT +RRVFD + +R ++SW AM+  +       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E  + +  M+     KPD VT++++L+  ++  +   G  V  EI   K G E E     
Sbjct: 180 EAYKCYETMKLAG-CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIA--KAGLELEPRVGT 236

Query: 404 CVVDMLGRAGRVGEALEFIKNMP 426
            +V M  + G + +A      +P
Sbjct: 237 SLVGMYAKCGDISKAQVIFDKLP 259


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/573 (44%), Positives = 386/573 (67%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LLNA  N   L+ GQ+VH  +++        + T L+  Y KC  +S AR +FD + E+
Sbjct: 153 SLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEK 212

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV+WT +I+ Y+Q+     AL L   M +++  PN+ TFA++L  C      E GK++H
Sbjct: 213 NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVH 272

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II+S +   ++V +SL+ MY K G + EAR +F  LP RDVV+ TA+++GYAQLG  +
Sbjct: 273 RYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHD 332

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI LFR++Q +G+  + +T+ SVLT+ S  A L  GK++H  ++       V LQ++L+
Sbjct: 333 EAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALV 392

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY-SKHGMGREVVELFNLMREENKVKPD 361
            MY+KCGS+  +  VF+ MSER V++W A++ G  ++HG  RE +E F+ M+++  +KPD
Sbjct: 393 SMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQG-IKPD 451

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            VT+ +VLS C+H G+ + G   F  +     G +P +EHY C VD+LGRAG + EA   
Sbjct: 452 KVTFTSVLSACTHVGLVEEGRKHFRSMY-LDYGIKPMVEHYSCFVDLLGRAGHLEEAENV 510

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MPF P  ++ G+LL ACRVH +V+ GE   + +++++P++ G YV LS++YA+AGR+
Sbjct: 511 ILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRY 570

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           ED  +VR++M+++ V K+PG+SWIE+D  +H FH  D+SHP  E++  ++ +L+ + KE 
Sbjct: 571 EDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEM 630

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+DVDEEQKE++L  HSE+LA+T+GL+ TP G PIR++KNLR+C DCH   
Sbjct: 631 GYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTAT 690

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SKV GR++  RD  RFHH  +G CSCGD+W
Sbjct: 691 KFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 236/419 (56%), Gaps = 6/419 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMI 85
           N +++  LC  G+L +AL  M T+   G  +  + +  LL  C   R+L  G+ VHA ++
Sbjct: 15  NSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAIL 74

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K+  +P  YL   L+  Y KC  L+DAR++FD +R+RN+VSWTAMI A+     + EA  
Sbjct: 75  KSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFK 134

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            +  M  +  +P++ TF ++L +       +LG+++H  I+++  E    VG+SL+ MYA
Sbjct: 135 CYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYA 194

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G I +AR +F+ LPE++VV+ T +I+GYAQ G  + A+EL   +Q   +  N +T+AS
Sbjct: 195 KCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFAS 254

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           +L   +  AAL HGK+VH ++++      + + NSLI MY KCG L  +R++F ++  R 
Sbjct: 255 ILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRD 314

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V++W AM+ GY++ G   E + LF  M+++  +KPD +T+ +VL+ CS       G  + 
Sbjct: 315 VVTWTAMVTGYAQLGFHDEAINLFRRMQQQG-IKPDKMTFTSVLTSCSSPAFLQEGKRIH 373

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            ++V    G+  ++     +V M  + G + +A      M      A    + G C  H
Sbjct: 374 QQLVHA--GYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQH 430


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/599 (42%), Positives = 384/599 (64%), Gaps = 5/599 (0%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NGQ  +AL    EM   G++       +++  C +   L  G+++H + I++     V +
Sbjct: 199 NGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLV 258

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  ++ A K+F+ M  R+V SW A+I  YS  +   EAL  F RM     
Sbjct: 259 VNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI 318

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +PN  T  +VL +CA  F  E G+QIH   I+S FES+  VG++L++MYAK G ++ A  
Sbjct: 319 KPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +FE +P+++VV+  AIISGY+Q G   EA+ LF ++Q +G+  +     SVL A +   A
Sbjct: 379 LFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA 438

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  GKQ+H + +R    S VV+   L+D+Y+KCG++  ++++F+ M E+ V+SW  M++ 
Sbjct: 439 LEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILA 498

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y  HG G + + LF+ M +E   K D + + A+L+ CSH G+ D+GL  F + +    G 
Sbjct: 499 YGIHGHGEDALALFSKM-QETGTKLDHIAFTAILTACSHAGLVDQGLQYF-QCMKSDYGL 556

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P++EHY C+VD+LGRAG + EA   IKNM  EP A + G+LLGACR+H N+++GE   +
Sbjct: 557 APKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAK 616

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
            L E++P+NAG YV+LSN+YA A RWEDV ++R++MKEK V K PG S + + + + TF 
Sbjct: 617 HLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFL 676

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
             DR+HP  E++ A ++ L  + ++AGYVP+ +  L DV+EE KE +L  HSEKLA++FG
Sbjct: 677 VGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFG 736

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +I T  G PIR++KNLR+C DCHN  KF+SK+ GR++ +RD NRFHH+  G CSCGDYW
Sbjct: 737 IINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 235/433 (54%), Gaps = 10/433 (2%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPPNP----QNLKTLCSNGQLTKAL---IEMATLG 53
           +RR K ++    S    Q Q T      N     + +     NG   KAL    +M   G
Sbjct: 56  LRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTG 115

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           +      + +++ AC +Q  L+ G++VH  +I   +   V + T L   Y KC  L +AR
Sbjct: 116 INPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENAR 175

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++FD M +R+VVSW A+I+ YSQ    +EAL LF  M  +  +PN  T  +V+  CA   
Sbjct: 176 QVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLL 235

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             E GKQIH   I+S  ES + V + L++MYAK G ++ A  +FE +P RDV S  AII 
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GY+      EA+  F ++QV G+  N +T  SVL A + L AL  G+Q+H + +R    S
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
             V+ N+L++MY+KCG++  + ++F+ M ++ V++WNA++ GYS+HG   E + LF  M+
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ 415

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            +  +KPDS   ++VL  C+H    ++G  +    +  + GFE  +     +VD+  + G
Sbjct: 416 AQG-IKPDSFAIVSVLPACAHFLALEQGKQIHGYTI--RSGFESNVVVGTGLVDIYAKCG 472

Query: 414 RVGEALEFIKNMP 426
            V  A +  + MP
Sbjct: 473 NVNTAQKLFERMP 485


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/574 (42%), Positives = 382/574 (66%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+ AC   R+L   + +HAH+  + +   V+L   LI  Y KC  ++DAR++FD M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++ SWT++I+ Y+Q     EAL L   MLR   +PN FTFA++L +   +    +G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K ++   +YVGS+LLDMYA+ GR+  A  VF+ L  ++ VS  A+I+G+A+ G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E  + +F ++Q  G  + + TY+SV +A++G+ AL  GK VH+H+++        + N+
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++DMY+K GS+  +R+VFD + ++ V++WN+ML  ++++G+GRE V  F  MR+   V  
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-VHL 365

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L++L+ CSHGG+   G   F  + +     EPEI+HY  VVD+LGRAG + +AL 
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMMKEYN--LEPEIDHYVTVVDLLGRAGLLNDALV 423

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP +PTAA+ G+LLG+CR+H N  IG+F    + E++P++ G  V+L N+YAS G+
Sbjct: 424 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 483

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR++MK   V K+P  SW+E++  +H F A+D +HP  EE+  K +++S++ ++
Sbjct: 484 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 543

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVP+   VL  VDE++++  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 544 AGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 603

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +++SKV+ R++ +RD NRFHH   G+CSCGDYW
Sbjct: 604 FRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/575 (42%), Positives = 378/575 (65%), Gaps = 4/575 (0%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            Y  LLNACVN   L  G+ +H+ ++K  +   + ++  LI  Y +C  + DAR +F++M 
Sbjct: 449  YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMV 508

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             ++++SWTAMI   ++     EAL +F  M ++  +PN  T+ ++L +C+     + G++
Sbjct: 509  RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR 568

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            IH  +I++   +  +V ++L++MY+  G + +AR VF+ + +RD+V+  A+I GYA   L
Sbjct: 569  IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNL 628

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +EA++LF +LQ EG+  + VTY ++L A +   +L   K++HS VL+    S   L N+
Sbjct: 629  GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA 688

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            L+  Y+KCGS + +  VFD M +R VISWNA++ G ++HG G++V++LF  M+ E  +KP
Sbjct: 689  LVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEG-IKP 747

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D VT++++LS CSH G+ + G   F  +   +D G  P IEHYGC+VD+LGRAG++ E  
Sbjct: 748  DIVTFVSLLSACSHAGLLEEGRRYFCSM--SRDFGITPTIEHYGCMVDLLGRAGQLDEVE 805

Query: 420  EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
              IK MPF+    I G+LLGACR+H NV + E   +  ++++P+NA  YV LS++YA+AG
Sbjct: 806  ALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAG 865

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
             W+   ++R+LM+++ VTK+PGRSWIE+   LH F A DRSHP  E++ A++ +L+   K
Sbjct: 866  MWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMK 925

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
              GYVPD   V++DVDE +KE  +  HSE+LA+ +GLI T  G PIR+ KNLR+C DCH 
Sbjct: 926  MEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHT 985

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              KF++K+  R++  RD NRFHH  +G CSCGDYW
Sbjct: 986  ATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 220/384 (57%), Gaps = 4/384 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +LNA      L+ G+ VH+H++   +   + + T L+  Y KC    D R++F+++ 
Sbjct: 348 YINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLV 407

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++++W  MI   ++  +  EA  ++ +M R    PN+ T+  +L +C        G++
Sbjct: 408 NRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGRE 467

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHS ++K  F   I V ++L+ MYA+ G I +AR +F  +  +D++S TA+I G A+ GL
Sbjct: 468 IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ +F+ +Q  G+  N VTY S+L A S  AAL  G+++H  V+   + +   + N+
Sbjct: 528 GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANT 587

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L++MYS CGS+  +R+VFD M++R ++++NAM+ GY+ H +G+E ++LF+ ++EE  +KP
Sbjct: 588 LVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG-LKP 646

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D VTY+ +L+ C++ G  +    + H +V  KDG+  +      +V    + G   +AL 
Sbjct: 647 DKVTYINMLNACANSGSLEWAKEI-HSLV-LKDGYLSDTSLGNALVSTYAKCGSFSDALL 704

Query: 421 FIKNMPFEPTAAILGSLLGACRVH 444
               M  +       +++G C  H
Sbjct: 705 VFDKM-MKRNVISWNAIIGGCAQH 727



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 236/474 (49%), Gaps = 40/474 (8%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +Y  +L  C+  + L  G+ VH H+I+ C     Y    LI  Y +C  + +AR++++++
Sbjct: 143 DYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKL 202

Query: 120 R--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
              ER V SW AM+  Y Q  +  EAL L   M +        T   +L+SC      E 
Sbjct: 203 NHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALEC 262

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G++IH   +K+     + V + +L+MYAK G IHEAR VF+ +  + VVS T II GYA 
Sbjct: 263 GREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYAD 322

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  E A E+F+K+Q EG++ N +TY +VL A SG AAL  GK VHSH+L     S + +
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAV 382

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +L+ MY+KCGS    R+VF+ +  R +I+WN M+ G ++ G   E  E+++ M+ E  
Sbjct: 383 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREG- 441

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV-- 415
           + P+ +TY+ +L+ C +      G  +   +V  KDGF  +I     ++ M  R G +  
Sbjct: 442 MMPNKITYVILLNACVNPTALHWGREIHSRVV--KDGFMFDISVQNALISMYARCGSIKD 499

Query: 416 -----------------------------GEALEFIKNMP---FEPTAAILGSLLGACRV 443
                                         EAL   ++M     +P      S+L AC  
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559

Query: 444 HYNVDIGEFVGQRLMEIE-PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
              +D G  + Q+++E     +A     L N+Y+  G  +D  +V + M ++ +
Sbjct: 560 PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 238/458 (51%), Gaps = 7/458 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K L EM   GL +       LL++C +   L  G+ +H   +K      V +   ++  Y
Sbjct: 230 KLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMY 289

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + +AR++FD+M  ++VVSWT +I  Y+   HS  A  +F +M +    PN  T+ 
Sbjct: 290 AKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYI 349

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            VL + +G    + GK +HS I+ +  ES + VG++L+ MYAK G   + R VFE L  R
Sbjct: 350 NVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR 409

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D+++   +I G A+ G  EEA E++ ++Q EGM+ N +TY  +L A     AL  G+++H
Sbjct: 410 DLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIH 469

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           S V++      + +QN+LI MY++CGS+  +R +F+ M  + +ISW AM+ G +K G+G 
Sbjct: 470 SRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGA 529

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E + +F  M++   +KP+ VTY ++L+ CS     D G  +  ++++   G   +     
Sbjct: 530 EALAVFQDMQQAG-LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA--GLATDAHVAN 586

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IE 461
            +V+M    G V +A +    M      A   +++G    H        +  RL E  ++
Sbjct: 587 TLVNMYSMCGSVKDARQVFDRMTQRDIVA-YNAMIGGYAAHNLGKEALKLFDRLQEEGLK 645

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           P+    Y+ + N  A++G  E    +  L+ +     D
Sbjct: 646 PDKV-TYINMLNACANSGSLEWAKEIHSLVLKDGYLSD 682



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 175/336 (52%), Gaps = 8/336 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   GL+     Y ++LNAC +   L  G+R+H  +I+       ++   L+  Y+ C 
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCG 596

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DAR++FD M +R++V++ AMI  Y+      EAL LF R+     +P++ T+  +L 
Sbjct: 597 SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 656

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA +   E  K+IHSL++K  + S   +G++L+  YAK G   +A  VF+ + +R+V+S
Sbjct: 657 ACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVIS 716

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             AII G AQ G  ++ ++LF ++++EG+  + VT+ S+L+A S    L  G++    + 
Sbjct: 717 WNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 776

Query: 288 R-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREV 345
           R F I   +     ++D+  + G L     +   M  +     W A+L     HG     
Sbjct: 777 RDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGN---- 832

Query: 346 VELFNLMREEN-KVKPD-SVTYLAVLSGCSHGGMED 379
           V +     E + K+ PD +  Y+A+    +  GM D
Sbjct: 833 VPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWD 868



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 182/397 (45%), Gaps = 50/397 (12%)

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           A+++   + +     N   +  +L  C        G+++H  II+       Y  ++L++
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 203 MYAKAGRIHEARGVFECL--PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           MY + G I EAR V+  L   ER V S  A++ GY Q G  EEA++L R++Q  G+    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T   +L++    +AL  G+++H   ++  +   V + N +++MY+KCGS+  +R VFD 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS------- 373
           M  ++V+SW  ++ GY+  G      E+F  M++E  V P+ +TY+ VL+  S       
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG-VVPNRITYINVLNAFSGPAALKW 363

Query: 374 ----HGGMEDRG----LAVFHEIV----------DCKDGFEPEIEH----YGCVVDMLGR 411
               H  + + G    LAV   +V          DC+  FE  +      +  ++  L  
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 412 AGRVGEALEFIKNMPFE---PTAAILGSLLGAC----RVHYNVDIGEFVGQR--LMEIEP 462
            G   EA E    M  E   P       LL AC     +H+  +I   V +   + +I  
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           +NA     L ++YA  G  +D      L+  K V KD
Sbjct: 484 QNA-----LISMYARCGSIKDA----RLLFNKMVRKD 511



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 101/188 (53%), Gaps = 9/188 (4%)

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQN 299
           + A+++ + LQ +G   N   Y  +L     +  L  G++VH H+++    +  Y V  N
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV--N 180

Query: 300 SLIDMYSKCGSLTYSRRVFD--NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           +LI+MY +CGS+  +R+V++  N +ERTV SWNAM+VGY ++G   E ++L   M +++ 
Sbjct: 181 ALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREM-QQHG 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +     T + +LS C      + G  +  E +  +  F+  + +  C+++M  + G + E
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHE 297

Query: 418 ALEFIKNM 425
           A E    M
Sbjct: 298 AREVFDKM 305


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/623 (42%), Positives = 376/623 (60%), Gaps = 38/623 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      + +LLN+C     L  G+R+H+H+ +      V +   LI  Y KC 
Sbjct: 270 KMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCN 329

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF-----EALNLFIRMLRSDTEPNEFTF 162
           C+ DAR+ FD M +R+V+SW+AMI+ Y+Q  +       E   L  RM R    PN+ TF
Sbjct: 330 CIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTF 389

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF----- 217
            ++L +C+     E G+QIH+ I K  FES   + +++ +MYAK G I+EA  VF     
Sbjct: 390 MSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMEN 449

Query: 218 --------------EC------------LPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
                         +C            +  R+VVS   +I+GYAQ G   +  EL   +
Sbjct: 450 KNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM 509

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           +VEG   + VT  S+L A   L+AL  GK VH+  ++  + S  V+  SLI MYSKCG +
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEV 569

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           T +R VFD +S R  ++WNAML GY +HG+G E V+LF  M +E +V P+ +T+ AV+S 
Sbjct: 570 TEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKE-RVPPNEITFTAVISA 628

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           C   G+   G  +F  I+      +P  +HYGC+VD+LGRAGR+ EA EFI+ MP EP  
Sbjct: 629 CGRAGLVQEGREIFR-IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDI 687

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           ++  +LLGAC+ H NV + E+    ++ +EP NA  YV LSN+YA AGRW+D T+VR++M
Sbjct: 688 SVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVM 747

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
            +K + KD G S IE+D  +HTF A D +HP  + + A+++ L+ + KEAGY PDM  VL
Sbjct: 748 DDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVL 807

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           +DVDE QKE+ L  HSEKLA+ +GL+ TP G PIR++KNLR+C DCH   KF+SK+  R+
Sbjct: 808 HDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKRE 867

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +  RD NRFH+   GTCSCGD+W
Sbjct: 868 IVARDANRFHYFKNGTCSCGDFW 890



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 243/471 (51%), Gaps = 22/471 (4%)

Query: 36  LCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           LC  G+L +A+  +  +   GL +    Y  ++  C   R    G+ VH  + +      
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +YL   LI FY+K   ++   ++F  M  R+VV+W++MI+AY+   H  +A + F RM  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           ++ EPN  TF ++L +C      E  ++IH+++  S  E+ + V ++L+ MY+K G I  
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F+ + ER+VVS TAII   AQ     EA EL+ K+   G+  N VT+ S+L + + 
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
             AL  G+++HSH+    + + VV+ N+LI MY KC  +  +R  FD MS+R VISW+AM
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 333 LVGYSKHGMG-----REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           + GY++ G        EV +L   MR E  V P+ VT++++L  CS  G  ++G  +  E
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREG-VFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           I   K GFE +      + +M  + G + EA +    M  +   A   SLL        +
Sbjct: 412 I--SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVA-WASLLT-----MYI 463

Query: 448 DIGEFVGQR--LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
             G+         E+   N  ++ ++   YA +G   D+ +V EL+    V
Sbjct: 464 KCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSG---DIAKVFELLSSMKV 511


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 381/591 (64%), Gaps = 2/591 (0%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            K  +EM   GLE     + ++L  C N   L  G+++H  +I++  +  V L   LI  Y
Sbjct: 573  KLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMY 632

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
             +C  L DA ++F  +R RNV+SWTAMI  ++ +    +A  LF +M     +P + TF+
Sbjct: 633  IRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFS 692

Query: 164  TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            ++L +C  +   + GK++ + I+ S +E    VG++L+  Y+K+G + +AR VF+ +P R
Sbjct: 693  SILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNR 752

Query: 224  DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            D++S   +I+GYAQ GL   A++   ++Q +G++ N  ++ S+L A S  +AL  GK+VH
Sbjct: 753  DIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVH 812

Query: 284  SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            + +++ ++   V +  +LI MY+KCGSL  ++ VFDN +E+ V++WNAM+  Y++HG+  
Sbjct: 813  AEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLAS 872

Query: 344  EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
            + ++ FN M +E  +KPD  T+ ++LS C+H G+   G  +F  + + + G  P IEHYG
Sbjct: 873  KALDFFNCMDKEG-IKPDGSTFTSILSACNHSGLVMEGNRIFSSL-ESQHGLSPTIEHYG 930

Query: 404  CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
            C+V +LGRAGR  EA   I  MPF P AA+  +LLGACR+H NV + E      +++   
Sbjct: 931  CLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNAR 990

Query: 464  NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
            N   YV+LSN+YA+AGRW+DV ++R +M+ + + K+PGRSWIE+D I+H F A+DRSHP 
Sbjct: 991  NPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 1050

Query: 524  REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
              E+  ++K+LS++ + AGY PD   VL+++D+E +E  L  HSE+LA+ +GL+ TP G 
Sbjct: 1051 TAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGT 1110

Query: 584  PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PIR+ KNLRIC DCH  +KF+SK+ GR++  RD NRFH    G CSC D+W
Sbjct: 1111 PIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 214/385 (55%), Gaps = 3/385 (0%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  K   +M + G++     +  LL+AC N      G+ +H  ++++  +   +L   L
Sbjct: 468 GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANAL 527

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y +C  + +A+ +F+  R R+++SW +MI+ ++Q      A  LF+ M +   EP++
Sbjct: 528 MNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDK 587

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            TFA+VL  C      ELG+QIH LII+S  +  + +G++L++MY + G + +A  VF  
Sbjct: 588 ITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS 647

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           L  R+V+S TA+I G+A  G D +A ELF ++Q +G      T++S+L A    A L  G
Sbjct: 648 LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K+V +H+L         + N+LI  YSK GS+T +R+VFD M  R ++SWN M+ GY+++
Sbjct: 708 KKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQN 767

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G+G   ++    M+E+  V  +  +++++L+ CS     + G  V  EIV  K   + ++
Sbjct: 768 GLGGTALQFAYQMQEQGVVL-NKFSFVSILNACSSFSALEEGKRVHAEIV--KRKMQGDV 824

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKN 424
                ++ M  + G + EA E   N
Sbjct: 825 RVGAALISMYAKCGSLEEAQEVFDN 849



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 212/379 (55%), Gaps = 3/379 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + G+ M    Y ++LNAC   + L  G+ +H+H+ +  +   V +   LI  Y +C 
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCG 434

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++F+ M +R+++SW A+I+ Y+++    EA+ L+ +M     +P   TF  +L+
Sbjct: 435 DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C  +  +  GK IH  I++S  +S+ ++ ++L++MY + G I EA+ VFE    RD++S
Sbjct: 495 ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             ++I+G+AQ G  E A +LF +++ EG+  + +T+ASVL       AL  G+Q+H  ++
Sbjct: 555 WNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLII 614

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
              +   V L N+LI+MY +CGSL  +  VF ++  R V+SW AM+ G++  G  R+  E
Sbjct: 615 ESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFE 674

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M+ +   KP   T+ ++L  C      D G  V   I++   G+E +      ++ 
Sbjct: 675 LFWQMQNDG-FKPVKSTFSSILKACMSSACLDEGKKVIAHILN--SGYELDTGVGNALIS 731

Query: 408 MLGRAGRVGEALEFIKNMP 426
              ++G + +A +    MP
Sbjct: 732 AYSKSGSMTDARKVFDKMP 750



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 237/486 (48%), Gaps = 42/486 (8%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM T G       Y ++L AC +   L  G+++H+ +I+  Y+    ++  L+  Y KCE
Sbjct: 173 EMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCE 232

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++F  +  R+VVS+  M+  Y+QKA+  E + LF +M      P++ T+  +L 
Sbjct: 233 DLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLD 292

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + GK+IH L +     S I VG++L  M+ + G +  A+   E   +RDVV 
Sbjct: 293 AFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVV 352

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+I+  AQ G  EEA E + +++ +G++ N  TY SVL A S   ALG G+ +HSH+ 
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHIS 412

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                S V + NSLI MY++CG L  +R +F+ M +R +ISWNA++ GY++     E ++
Sbjct: 413 EVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           L+  M+ E  VKP  VT+L +LS C++      G  +  +I+  + G +        +++
Sbjct: 473 LYKQMQSEG-VKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL--RSGIKSNGHLANALMN 529

Query: 408 MLGRAGRVGEALEF----------------------------------IKNMPFEPTAAI 433
           M  R G + EA                                     +K    EP    
Sbjct: 530 MYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVREL 490
             S+L  C+    +++G  +   ++E   +   N GN +I  N+Y   G  +D   V   
Sbjct: 590 FASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALI--NMYIRCGSLQDAYEVFHS 647

Query: 491 MKEKAV 496
           ++ + V
Sbjct: 648 LRHRNV 653



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 195/366 (53%), Gaps = 3/366 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+  C  +R+L   +R+HA M++    P ++L   LI  Y KC  +SDA ++F +M 
Sbjct: 85  YVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP 144

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V+SW ++IS Y+Q+    +A  LF  M  +   P++ T+ ++LT+C      E GK+
Sbjct: 145 RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKK 204

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHS II++ ++    V +SLL+MY K   +  AR VF  +  RDVVS   ++  YAQ   
Sbjct: 205 IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAY 264

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EE I LF ++  EG+  + VTY ++L A +  + L  GK++H   +   + S + +  +
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTA 324

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L  M+ +CG +  +++  +  ++R V+ +NA++   ++HG   E  E +  MR +  V  
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM- 383

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  TYL+VL+ CS       G  +   I +   G   +++    ++ M  R G +  A E
Sbjct: 384 NRTTYLSVLNACSTSKALGAGELIHSHISEV--GHSSDVQIGNSLISMYARCGDLPRARE 441

Query: 421 FIKNMP 426
               MP
Sbjct: 442 LFNTMP 447



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 187/406 (46%), Gaps = 47/406 (11%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           TE N   +  ++ +C         K+IH+ ++++     I++ + L++MY K   + +A 
Sbjct: 78  TETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH 137

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +P RDV+S  ++IS YAQ G  ++A +LF ++Q  G I + +TY S+LTA    A
Sbjct: 138 QVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPA 197

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            L +GK++HS ++         +QNSL++MY KC  L  +R+VF  +  R V+S+N ML 
Sbjct: 198 ELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLG 257

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG-----LAVFHEI- 388
            Y++     E + LF  M  E  + PD VTY+ +L   +   M D G     LAV   + 
Sbjct: 258 LYAQKAYVEECIGLFGQMSSEG-IPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLN 316

Query: 389 -------------VDCKD--GFEPEIEH--------YGCVVDMLGRAGRVGEALEFIKNM 425
                        V C D  G +  +E         Y  ++  L + G   EA E    M
Sbjct: 317 SDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQM 376

Query: 426 PFEPTA---AILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVILSNLYASAG 479
             +          S+L AC     +  GE +   + E+   +    GN +I  ++YA  G
Sbjct: 377 RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLI--SMYARCG 434

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF-HASDRSHPMR 524
              D+ R REL         P R  I  + I+  +    DR   M+
Sbjct: 435 ---DLPRARELFNTM-----PKRDLISWNAIIAGYARREDRGEAMK 472


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/574 (42%), Positives = 384/574 (66%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +LN C   R L+ G+ +HAH+  + +   + L   ++  Y KC  L +A+ +FD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT +IS YSQ   + EAL LF +ML    +PNEFT +++L +         G+Q
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+  +K  ++ +++VGSSLLDMYA+   + EA+ +F  L  ++VVS  A+I+G+A+ G 
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E  + LF ++  +G    + TY+SV TA +   +L  GK VH+HV++        + N+
Sbjct: 288 GEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNT 347

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+K GS+  +++VF  + ++ ++SWN+++ GY++HG+G E ++LF  M +  KV+P
Sbjct: 348 LIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKA-KVQP 406

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L+VL+ CSH G+ D G   F E++  K   E ++ H+  VVD+LGRAGR+ EA +
Sbjct: 407 NEITFLSVLTACSHSGLLDEGQYYF-ELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANK 464

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+ MP +PTAA+ G+LLG+CR+H N+D+G +  +++ E++P ++G +V+LSN+YASAGR
Sbjct: 465 FIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 524

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
             D  +VR++MKE  V K+P  SW+E++  +H F A+D SHPMREE+    +++S K KE
Sbjct: 525 LSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 584

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD S VL+ ++++ +E  L  HSEKLAL F ++ TP G  IR+ KN+RIC DCH+ 
Sbjct: 585 IGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSA 644

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF S+V GR++ +RD NRFHH + G CSC DYW
Sbjct: 645 FKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 171/299 (57%), Gaps = 4/299 (1%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +GQ ++AL    +M  LG +       +LL A     +   G+++HA  +K  Y   V++
Sbjct: 184 SGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHV 243

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y +   + +A+ +F+ +  +NVVSW A+I+ +++K      + LF++MLR   
Sbjct: 244 GSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGF 303

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP  FT+++V T+CA +   E GK +H+ +IKS  +   Y+G++L+DMYAK+G I +A+ 
Sbjct: 304 EPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKK 363

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF  L ++D+VS  +IISGYAQ GL  EA++LF ++    +  N +T+ SVLTA S    
Sbjct: 364 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 423

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAML 333
           L  G+     + + +I + V    +++D+  + G L  + +  + M  + T   W A+L
Sbjct: 424 LDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 183/374 (48%), Gaps = 38/374 (10%)

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP    ++ +L  C      + G+ IH+ I  S FE  + + + +L+MYAK G + EA+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +P +D+VS T +ISGY+Q G   EA+ LF K+   G   N  T +S+L A     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
             HG+Q+H+  L++     V + +SL+DMY++   +  ++ +F++++ + V+SWNA++ G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           +++ G G  V+ LF  M  +   +P   TY +V + C+  G  ++G  V   ++  K G 
Sbjct: 282 HARKGEGEHVMRLFLQMLRQG-FEPTHFTYSSVFTACASSGSLEQGKWVHAHVI--KSGG 338

Query: 396 EPEIEHYGCVVDMLGRAGRV-------------------------------GEALEFIKN 424
           +P       ++DM  ++G +                                EAL+  + 
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 425 M---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGR 480
           M     +P      S+L AC     +D G++  + + + + E    ++V + +L   AGR
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 458

Query: 481 WEDVTRVRELMKEK 494
             +  +  E M  K
Sbjct: 459 LNEANKFIEEMPIK 472


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 390/602 (64%), Gaps = 6/602 (0%)

Query: 36  LCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
              +G++ +A +   +M   G+E     + ++L AC +   L+ GQ++  H+I+  Y   
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
             +RT L+  Y KC  L DA ++F+++ ++NVV+W AMI+AY Q      AL  F  +L+
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +PN  TF ++L  C  +   ELGK +H LI+K+  ES ++V ++L+ M+   G +  
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+ +F  +P+RD+VS   II+G+ Q G ++ A + F+ +Q  G+  + +T+  +L A + 
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
             AL  G+++H+ +        V++   LI MY+KCGS+  + +VF  + ++ V SW +M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++HG G+E +ELF  M++E  VKPD +T++  LS C+H G+ + GL  F  + +  
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEG-VKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN 746

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHYGC+VD+ GRAG + EA+EFI  M  EP + + G+LLGAC+VH NV++ E 
Sbjct: 747 --IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             Q+ +E++P + G +VILSN+YA+AG W++V ++R++M ++ V K PG+SWIE+D  +H
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
           TF++ D++HP  EE+ A++++L ++ ++ GYVPD   VL+DV++ +KE+ L  HSE+LA+
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAI 924

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           T+GL+ TP   PI + KNLR+C DCH   KF+SK+  R++  RD NRFHH  +G CSCGD
Sbjct: 925 TYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGD 984

Query: 633 YW 634
           +W
Sbjct: 985 FW 986



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 264/490 (53%), Gaps = 24/490 (4%)

Query: 2   RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLG---LEMRF 58
           R PK +   F+ +  TQ+   V         L  L   GQ  +A+  +  +    +++  
Sbjct: 60  RCPKGRCVVFADIKDTQKANAV---------LNRLSKAGQFNEAMQVLERVDSSHIQIYR 110

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           + Y  LL  C+  + L  G+R++ H+ K+  +P +++   LI  Y KC     A+++FD+
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDD 170

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           MRE++V SW  ++  Y Q     EA  L  +M++   +P++ TF ++L +CA A   + G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++++LI+K+ +++ ++VG++L++M+ K G I +A  VF+ LP RD+V+ T++I+G A+ 
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  ++A  LF++++ EG+  + V + S+L A +   AL  GK+VH+ +      + + + 
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            +++ MY+KCGS+  +  VFD +  R V+SW AM+ G+++HG   E    FN M E   +
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG-I 409

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P+ VT++++L  CS      RG  +   I++   G +  +     ++ M  + G + +A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLYA 476
               + +  +   A   +++ A   H   D      Q L++  I+P N+  +  + N+  
Sbjct: 468 HRVFEKISKQNVVA-WNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCK 525

Query: 477 SA-----GRW 481
           S+     G+W
Sbjct: 526 SSDSLELGKW 535



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 203/364 (55%), Gaps = 3/364 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC +   L  G++VHA M +  +   +Y+ T ++  Y KC  + DA ++FD ++ R
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSWTAMI+ ++Q     EA   F +M+ S  EPN  TF ++L +C+     + G+QI 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II++ + S   V ++LL MYAK G + +A  VFE + +++VV+  A+I+ Y Q    +
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A+  F+ L  EG+  N  T+ S+L       +L  GK VH  +++  + S + + N+L+
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            M+  CG L  ++ +F++M +R ++SWN ++ G+ +HG  +   + F +M +E+ +KPD 
Sbjct: 557 SMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMM-QESGIKPDK 615

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+  +L+ C+       G  +   I +    F+ ++     ++ M  + G + +A +  
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEA--AFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 423 KNMP 426
             +P
Sbjct: 674 HKLP 677


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 390/602 (64%), Gaps = 6/602 (0%)

Query: 36  LCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
              +G++ +A +   +M   G+E     + ++L AC +   L+ GQ++  H+I+  Y   
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
             +RT L+  Y KC  L DA ++F+++ ++NVV+W AMI+AY Q      AL  F  +L+
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +PN  TF ++L  C  +   ELGK +H LI+K+  ES ++V ++L+ M+   G +  
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+ +F  +P+RD+VS   II+G+ Q G ++ A + F+ +Q  G+  + +T+  +L A + 
Sbjct: 568 AKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
             AL  G+++H+ +        V++   LI MY+KCGS+  + +VF  + ++ V SW +M
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++HG G+E +ELF  M++E  VKPD +T++  LS C+H G+ + GL  F  + +  
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEG-VKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN 746

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHYGC+VD+ GRAG + EA+EFI  M  EP + + G+LLGAC+VH NV++ E 
Sbjct: 747 --IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             Q+ +E++P + G +VILSN+YA+AG W++V ++R++M ++ V K PG+SWIE+D  +H
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
           TF++ D++HP  EE+ A++++L ++ ++ GYVPD   VL+DV++ +KE+ L  HSE+LA+
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAI 924

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           T+GL+ TP   PI + KNLR+C DCH   KF+SK+  R++  RD NRFHH  +G CSCGD
Sbjct: 925 TYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGD 984

Query: 633 YW 634
           +W
Sbjct: 985 FW 986



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 265/490 (54%), Gaps = 24/490 (4%)

Query: 2   RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLG---LEMRF 58
           R PK +   F+ +  TQ+   V         L  L   GQ  +A+  +  +    +++  
Sbjct: 60  RCPKGRCVVFADIKDTQKANAV---------LNRLSKAGQFNEAMQVLERVDSSHIQIYR 110

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           + Y  LL  C+  + L  G+R++ H+ K+  +P +++R  LI  Y KC     A+++FD+
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDD 170

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           MRE++V SW  ++  Y Q     EA  L  +M++   +P++ TF ++L +CA A   + G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++++LI+K+ +++ ++VG++L++M+ K G I +A  VF+ LP RD+V+ T++I+G A+ 
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  ++A  LF++++ EG+  + V + S+L A +   AL  GK+VH+ +      + + + 
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            +++ MY+KCGS+  +  VFD +  R V+SW AM+ G+++HG   E    FN M E   +
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG-I 409

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P+ VT++++L  CS      RG  +   I++   G +  +     ++ M  + G + +A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLYA 476
               + +  +   A   +++ A   H   D      Q L++  I+P N+  +  + N+  
Sbjct: 468 HRVFEKISKQNVVA-WNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCK 525

Query: 477 SA-----GRW 481
           S+     G+W
Sbjct: 526 SSDSLELGKW 535



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 203/364 (55%), Gaps = 3/364 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC +   L  G++VHA M +  +   +Y+ T ++  Y KC  + DA ++FD ++ R
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSWTAMI+ ++Q     EA   F +M+ S  EPN  TF ++L +C+     + G+QI 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II++ + S   V ++LL MYAK G + +A  VFE + +++VV+  A+I+ Y Q    +
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A+  F+ L  EG+  N  T+ S+L       +L  GK VH  +++  + S + + N+L+
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALV 556

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            M+  CG L  ++ +F++M +R ++SWN ++ G+ +HG  +   + F +M +E+ +KPD 
Sbjct: 557 SMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMM-QESGIKPDK 615

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+  +L+ C+       G  +   I +    F+ ++     ++ M  + G + +A +  
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEA--AFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 423 KNMP 426
             +P
Sbjct: 674 HKLP 677


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/627 (40%), Positives = 398/627 (63%), Gaps = 9/627 (1%)

Query: 8   SRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
           SR  S L  +++  ++P+      + ++L    +     +E + + ++ RF  Y+TLL  
Sbjct: 7   SRLLSQLKLSRRLHSLPAPLSEDSDDESL----KFPSNDLEGSYIPVDRRF--YNTLLKK 60

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C   + L  G+ VH H+I++ +R  + +   L+  Y KC  L +ARK+FD+M ER+ V+W
Sbjct: 61  CTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTW 120

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           T +IS YSQ    F+AL LF +MLR    PNEFT ++V+ + A       G Q+H   +K
Sbjct: 121 TTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 180

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
             F+S+++VGS+LLD+Y + G + +A+ VF+ L  R+ VS  A+I+G+A+    E+A+EL
Sbjct: 181 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALEL 240

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F+ +  EG   ++ +YAS+  A S    L  GK VH+++++          N+L+DMY+K
Sbjct: 241 FQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAK 300

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            GS+  +R++FD +++R V+SWN++L  Y++HG G E V  F  MR    ++P+ +++L+
Sbjct: 301 SGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRR-GGIRPNEISFLS 359

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VL+ CSH G+ D G   ++E++  KDG   E  HY  +VD+LGRAG +  AL FI+ MP 
Sbjct: 360 VLTACSHSGLLDEGWH-YYELMK-KDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPI 417

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
           EPTAAI  +LL ACR+H N ++G +  + + E++P++ G +VIL N+YAS GRW D  RV
Sbjct: 418 EPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARV 477

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R+ MKE  V K+P  SW+E++  +H F A+D  HP REE++ K +++  K KE GYVPD 
Sbjct: 478 RKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDT 537

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           S V+  VD++++E  L  HSEK+AL F L+ TP G+ I + KN+R+C DCH+  K  SK 
Sbjct: 538 SHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKA 597

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            GR++ +RD NRFHH  +G CSC DYW
Sbjct: 598 VGREIIVRDTNRFHHFKDGACSCKDYW 624


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/573 (42%), Positives = 381/573 (66%), Gaps = 3/573 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+ AC   R+L   + +HAH+  + +   V+L   LI  Y KC  ++DAR++FD M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++ SWT++I+ Y+Q     EAL L   MLR   +PN FTFA++L +   +    +G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K ++   +YVGS+LLDMYA+ GR+  A  VF+ L  ++ VS  A+I+G+A+ G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E  + +F ++Q  G  + + TY+SV +A++G+ AL  GK VH+H+++        + N+
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++DMY+K GS+  +R+VFD + ++ V++WN+ML  ++++G+GRE V  F  MR+   V  
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-VHL 365

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L++L+ CSHGG+   G   F  + +     EPEI+HY  VVD+LGRAG + +AL 
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMMKEYN--LEPEIDHYVTVVDLLGRAGLLNDALV 423

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP +PTAA+ G+LLG+CR+H N  IG+F    + E++P++ G  V+L N+YAS G+
Sbjct: 424 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 483

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR++MK   V K+P  SW+E++  +H F A+D +HP  EE+  K +++S++ ++
Sbjct: 484 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 543

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVP+   VL  VDE++++  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 544 AGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 603

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
            +++SKV+ R++ +RD NRFHH   G+CSCGDY
Sbjct: 604 FRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/609 (41%), Positives = 390/609 (64%), Gaps = 12/609 (1%)

Query: 26  FPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMI 85
           FP N   L+T  ++       +E + +  + RF  Y+TLL  C   + L  G+ VHAH++
Sbjct: 37  FPSNDLLLRTSSND-------LEGSYIPADRRF--YNTLLKKCTVFKLLIQGRIVHAHIL 87

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           ++ +R  + +   L+  Y KC  L +ARK+F++M +R+ V+WT +IS YSQ     +AL 
Sbjct: 88  QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALL 147

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            F +MLR    PNEFT ++V+ + A       G Q+H   +K  F+S+++VGS+LLD+Y 
Sbjct: 148 FFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT 207

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G + +A+ VF+ L  R+ VS  A+I+G+A+    E+A+ELF+ +  +G   ++ +YAS
Sbjct: 208 RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYAS 267

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           +  A S    L  GK VH+++++          N+L+DMY+K GS+  +R++FD +++R 
Sbjct: 268 LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRD 327

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V+SWN++L  Y++HG G+E V  F  MR    ++P+ +++L+VL+ CSH G+ D G   +
Sbjct: 328 VVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-IRPNEISFLSVLTACSHSGLLDEGWH-Y 385

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           +E++  KDG  PE  HY  VVD+LGRAG +  AL FI+ MP EPTAAI  +LL ACR+H 
Sbjct: 386 YELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           N ++G +  + + E++P++ G +VIL N+YAS GRW D  RVR+ MKE  V K+P  SW+
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           E++  +H F A+D  HP REE++ K +++  K KE GYVPD S V+  VD++++E  L  
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSEK+AL F L+ TP G+ I + KN+R+C DCH   K  SKV GR++ +RD NRFHH  +
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624

Query: 626 GTCSCGDYW 634
           G CSC DYW
Sbjct: 625 GNCSCKDYW 633


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/580 (43%), Positives = 378/580 (65%), Gaps = 3/580 (0%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           E     Y   L  C+ +     G+ +H  ++K      ++    L+  Y K + L DA K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM ERN +S+  +I  Y++     EA+ LF+R+ R +  PN+FTFA+VL +CA   G
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEG 153

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             LG QIH  +IK    S ++V ++L+D+YAK GR+  +  +F   P R+ V+   +I G
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           + QLG  E+A+ LF  +    + +  VTY+S L A + LAAL  G Q+HS  ++      
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 273

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           +V+ N+LIDMY+KCGS+  +R VFD M+++  +SWNAM+ GYS HG+GRE + +F+ M +
Sbjct: 274 IVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKM-Q 332

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E +VKPD +T++ VLS C++ G+ D+G A F  ++    G EP IEHY C+V +LGR G 
Sbjct: 333 ETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQ-DHGIEPCIEHYTCMVWLLGRGGH 391

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + +A++ I  +PF+P+  +  +LLGAC +H ++++G    QR++E+EP++   +V+LSN+
Sbjct: 392 LDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNM 451

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA+A RW++V  VR+ MK K V K+PG SWIE    +H+F   D SHP    ++  ++ L
Sbjct: 452 YATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL 511

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
            +K K+AGY+P+ + VL DV++E+KE++L  HSE+LAL+FG+I TP G+PIR++KNLRIC
Sbjct: 512 HMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRIC 571

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VDCH   K +SKV  R++ +RD NRFHH  EG CSCGDYW
Sbjct: 572 VDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 141/266 (53%), Gaps = 4/266 (1%)

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S +E N   +A  L  C        GK +H  I+K      ++  + LL+MY K+  + +
Sbjct: 32  SPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCD 91

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F+ +PER+ +S   +I GYA+     EAIELF +L  E ++ N  T+ASVL A + 
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACAT 150

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           +  L  G Q+H HV++  + S V + N+L+D+Y+KCG +  S  +F     R  ++WN +
Sbjct: 151 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 210

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +VG+ + G G + + LF L   E +V+   VTY + L  C+     + GL +    V  K
Sbjct: 211 IVGHVQLGDGEKALRLF-LNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV--K 267

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEA 418
             F+ +I     ++DM  + G + +A
Sbjct: 268 TTFDKDIVVTNALIDMYAKCGSIKDA 293


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/574 (42%), Positives = 383/574 (66%), Gaps = 4/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +LN C   R L+ G+ +HAH+  + +   + L   ++  Y KC  L +A+ +FD+M 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT +IS YSQ   + EAL LF +ML    +PNEFT +++L +         G+Q
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+  +K  ++ +++VGSSLLDMYA+   + EA+ +F  L  ++VVS  A+I+G+A+ G 
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E  + LF ++  +G    + TY+SVL   S   +L  GK VH+HV++        + N+
Sbjct: 288 GEHVMRLFXQMLRQGFEPTHFTYSSVLACASS-GSLEQGKWVHAHVIKSGGQPIAYIGNT 346

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+K GS+  +++VF  + ++ ++SWN+++ GY++HG+G E ++LF  M +  KV+P
Sbjct: 347 LIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKA-KVQP 405

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L+VL+ CSH G+ D G   F E++  K   E ++ H+  VVD+LGRAGR+ EA +
Sbjct: 406 NEITFLSVLTACSHSGLLDEGQYYF-ELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANK 463

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+ MP +PTAA+ G+LLGACR+H N+D+G +  +++ E++P ++G +V+LSN+YASAGR
Sbjct: 464 FIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 523

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
             D  +VR++MKE  V K+P  SW+E++  +H F A+D SHPMREE+    +++S K KE
Sbjct: 524 LSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 583

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD S VL+ ++++ +E  L  HSEKLAL F ++ TP G  IR+ KN+RIC DCH+ 
Sbjct: 584 IGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSA 643

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF S+V GR++ +RD NRFHH + G CSC DYW
Sbjct: 644 FKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 170/299 (56%), Gaps = 5/299 (1%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +GQ ++AL    +M  LG +       +LL A     +   G+++HA  +K  Y   V++
Sbjct: 184 SGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHV 243

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y +   + +A+ +F+ +  +NVVSW A+I+ +++K      + LF +MLR   
Sbjct: 244 GSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGF 303

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP  FT+++VL +CA +   E GK +H+ +IKS  +   Y+G++L+DMYAK+G I +A+ 
Sbjct: 304 EPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKK 362

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF  L ++D+VS  +IISGYAQ GL  EA++LF ++    +  N +T+ SVLTA S    
Sbjct: 363 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 422

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAML 333
           L  G+     + + +I + V    +++D+  + G L  + +  + M  + T   W A+L
Sbjct: 423 LDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 181/374 (48%), Gaps = 39/374 (10%)

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP    ++ +L  C      + G+ IH+ I  S FE  + + + +L+MYAK G + EA+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +P +D+VS T +ISGY+Q G   EA+ LF K+   G   N  T +S+L A     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
             HG+Q+H+  L++     V + +SL+DMY++   +  ++ +F++++ + V+SWNA++ G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           +++ G G  V+ LF  M  +   +P   TY +VL+  S G +E       H I   K G 
Sbjct: 282 HARKGEGEHVMRLFXQMLRQG-FEPTHFTYSSVLACASSGSLEQGKWVHAHVI---KSGG 337

Query: 396 EPEIEHYGCVVDMLGRAGRV-------------------------------GEALEFIKN 424
           +P       ++DM  ++G +                                EAL+  + 
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 425 M---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGR 480
           M     +P      S+L AC     +D G++  + + + + E    ++V + +L   AGR
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 457

Query: 481 WEDVTRVRELMKEK 494
             +  +  E M  K
Sbjct: 458 LNEANKFIEEMPIK 471


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/570 (43%), Positives = 369/570 (64%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L +C+       G+ VH   +K CY   +++   L+  Y K   + DA+++F+EM + ++
Sbjct: 244 LKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDL 303

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           + W+ MI+ Y+Q   S EAL+LF+RM ++   PN FTFA+VL +CA +   +LGKQIHS 
Sbjct: 304 IPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSC 363

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           ++K    S+++V ++++D+YAK G I  +  +FE LP+R+ V+   II GY QLG  E A
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF  +    M    VTY+SVL A + LAAL  G Q+HS  ++       V+ NSLIDM
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +R  FD M++R  +SWNAM+ GYS HGM  E + LF++M+  +  KP+ +T
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTD-CKPNKLT 542

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ VLS CS+ G+  +G A F  +    D  +P IEHY C+V +LGR GR  EA++ I  
Sbjct: 543 FVGVLSACSNAGLLYKGQAHFESMSKDYD-IKPCIEHYTCMVWLLGRLGRFDEAMKLIGE 601

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           + ++P+  +  +LLGAC +H  VD+G    Q ++E+EP +   +V+LSN+YA+AGRW++V
Sbjct: 602 IAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNV 661

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
             VR+ M++K V K+PG SW+E   ++H F   D SHP  + + A ++ L+ K ++AGYV
Sbjct: 662 AFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYV 721

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD + VL DV +++KE+ L  HSE+LAL +GLI TP    IR+IKNLRIC+DCH   K +
Sbjct: 722 PDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLI 781

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKV  R++ +RD NRFHH   G CSCGDYW
Sbjct: 782 SKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 204/358 (56%), Gaps = 3/358 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + TLL   V+         +HA + K  +    ++ T LI  Y+    +  AR +FD++ 
Sbjct: 139 FTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDIC 198

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT M++ Y++     E+L LF +M     +PN FT +  L SC G   F +GK 
Sbjct: 199 CKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKS 258

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K  ++  ++VG +LL++YAK+G I +A+ +FE +P+ D++  + +I+ YAQ   
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EA++LF +++   ++ N  T+ASVL A +   +L  GKQ+HS VL+F + S V + N+
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNA 378

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++D+Y+KCG +  S ++F+ + +R  ++WN ++VGY + G G   + LF  M E + ++P
Sbjct: 379 IMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHD-MQP 437

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             VTY +VL   +     + GL +    +  K  +  +      ++DM  + GR+ +A
Sbjct: 438 TEVTYSSVLRASASLAALEPGLQIHSLTI--KTMYNKDTVVANSLIDMYAKCGRINDA 493



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 183/351 (52%), Gaps = 3/351 (0%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G+ +H H++K      ++ +  L+ FY +   L DA K+FDEM + N +S+  +   YS
Sbjct: 53  AGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +     +AL+  +R+ +   E N F F T+L          L   +H+ + K    +  +
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           VG++L+D Y+  G +  AR VF+ +  +D+VS T +++ YA+    EE+++LF ++++ G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
              N  T +  L +  GL A   GK VH   L+      + +  +L+++Y+K G +  ++
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           R+F+ M +  +I W+ M+  Y++    +E ++LF  MR+ + V P++ T+ +VL  C+  
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS-VVPNNFTFASVLQACASS 351

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              D G  + H  V  K G    +     ++D+  + G +  +++  + +P
Sbjct: 352 VSLDLGKQI-HSCV-LKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 158/289 (54%), Gaps = 7/289 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC +  +L  G+++H+ ++K      V++   ++  Y KC  + ++ K+F+E+ 
Sbjct: 341 FASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RN V+W  +I  Y Q      A+NLF  ML  D +P E T+++VL + A     E G Q
Sbjct: 401 DRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQ 460

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHSL IK+ +     V +SL+DMYAK GRI++AR  F+ + +RD VS  A+I GY+  G+
Sbjct: 461 IHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGM 520

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQ 298
             EA+ LF  +Q      N +T+  VL+A S  A L +  Q H   +   ++I   +   
Sbjct: 521 SMEALNLFDMMQHTDCKPNKLTFVGVLSACSN-AGLLYKGQAHFESMSKDYDIKPCIEHY 579

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML---VGYSKHGMGR 343
             ++ +  + G    + ++   ++ + +V+ W A+L   V + K  +GR
Sbjct: 580 TCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGR 628


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 371/574 (64%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y + + AC   + L   +++HAH+  + +    +L   LI  Y KC  + DAR +FD+MR
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT++I+ Y+Q     EA+ L   ML+   +PN FTFA++L +         G+Q
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K  +   +YVGS+LLDMYA+ G++  A  VF+ L  ++ VS  A+ISG+A+ G 
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E A+  F ++   G  + + TY+SV ++++ L AL  GK VH+HV++        + N+
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K GS+  +R+VFD +  + +++WN+ML  ++++G+G+E V  F  MR+   V  
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG-VYL 352

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L +L+ CSHGG+   G   F E++   D  EPEI+HY  VV +LGRAG +  AL 
Sbjct: 353 NQITFLCILTACSHGGLVKEGKRYF-EMMKEYD-LEPEIDHYVTVVALLGRAGLLNYALV 410

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP EPTAA+ G+LL ACR+H N  +G+F    + E++P+++G  V+L N+YAS G+
Sbjct: 411 FIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQ 470

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR +MK   V K+P  SW+E++  +H F A+D +HP  EE+     ++S K ++
Sbjct: 471 WDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRK 530

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPDM  VL  VD+++KE  L  HSEKLAL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 531 EGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSA 590

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K++SKV+GR++ +RD NRFHH   G+CSCGDYW
Sbjct: 591 FKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 137/262 (52%), Gaps = 3/262 (1%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P    + + +T+CA +   E  ++IH+ +  S F    ++ +SL+ MY K   + +AR V
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  +D+VS T++I+GYAQ  +  EAI L   +       N  T+AS+L A    A  
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G G+Q+H+  ++      V + ++L+DMY++CG +  +  VFD +  +  +SWNA++ G+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G G   +  F  M   N  +    TY +V S  +  G  ++G  V   ++  +    
Sbjct: 229 ARKGDGESALMTFAEML-RNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLT 287

Query: 397 PEIEHYGCVVDMLGRAGRVGEA 418
             + +   ++DM  ++G + +A
Sbjct: 288 AFVGN--TLLDMYAKSGSMIDA 307



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 88/166 (53%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G E     Y ++ ++      L  G+ VHAH+IK+  +   ++   L+  Y K  
Sbjct: 243 EMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSG 302

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+FD +  +++V+W +M++A++Q     EA++ F  M +S    N+ TF  +LT
Sbjct: 303 SMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILT 362

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GK+   ++ + + E  I    +++ +  +AG ++ A
Sbjct: 363 ACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYA 408


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/575 (41%), Positives = 376/575 (65%), Gaps = 4/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LLNACVN   L  G+ +H+ + K  +   + ++  LI  Y++C  + DAR +FD+M 
Sbjct: 331 YVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMV 390

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++V+SWTAMI   ++     EAL ++  M ++  EPN  T+ ++L +C+     E G++
Sbjct: 391 RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRR 450

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  ++++   +  +VG++L++MY+  G + +AR VF+ + +RD+V+  A+I GYA   L
Sbjct: 451 IHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNL 510

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EA++LF +LQ EG+  + VTY ++L A +   +L   +++H+ V +    S   + N+
Sbjct: 511 GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA 570

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+  Y+KCGS + +  VF+ M++R VISWNA++ G ++HG G++ ++LF  M+ E  VKP
Sbjct: 571 LVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEG-VKP 629

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
           D VT++++LS CSH G+ + G   F  +   +D    P IEHYGC+VD+LGRAG++ EA 
Sbjct: 630 DIVTFVSLLSACSHAGLLEEGRRYFCSM--SQDFAIIPTIEHYGCMVDLLGRAGQLDEAE 687

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
             IK MPF+    I G+LLGACR+H NV + E   +  ++++ +NA  YV LS++YA+AG
Sbjct: 688 ALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAG 747

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W+   ++R+LM+++ VTK+PGRSWI++   LH F A DRSHP  E++ A++ +L+   K
Sbjct: 748 MWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMK 807

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD   V++DVDE +KE  +  HSE+LA+ +GLI TP G  I + KNLR+C DCH 
Sbjct: 808 MKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHT 867

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SK+  R++  RD NRFHH  +G CSCGDYW
Sbjct: 868 ATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 212/358 (59%), Gaps = 3/358 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++LNA  +   L+ G+ VH+ ++   +     + T L+  Y KC    D R++F+++ 
Sbjct: 230 YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLV 289

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++++W  MI   ++  +  EA  ++ +M R    PN+ T+  +L +C  +     GK+
Sbjct: 290 NRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE 349

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHS + K+ F S I V ++L+ MY++ G I +AR VF+ +  +DV+S TA+I G A+ G 
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ +++++Q  G+  N VTY S+L A S  AAL  G+++H  V+   + +   + N+
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNT 469

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L++MYS CGS+  +R+VFD M +R ++++NAM+ GY+ H +G+E ++LF+ ++EE  +KP
Sbjct: 470 LVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG-LKP 528

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D VTY+ +L+ C++ G  +    + H +V  K GF  +      +V    + G   +A
Sbjct: 529 DKVTYINMLNACANSGSLEWAREI-HTLVR-KGGFFSDTSVGNALVSTYAKCGSFSDA 584



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 236/458 (51%), Gaps = 7/458 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K L +M   GL        + L++C +   L  G+ +H   ++      V +   ++  Y
Sbjct: 112 KLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMY 171

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + +AR++FD+M +++VVSWT  I  Y+    S  A  +F +M +    PN  T+ 
Sbjct: 172 AKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYI 231

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +VL + +     + GK +HS I+ +  ES   VG++L+ MYAK G   + R VFE L  R
Sbjct: 232 SVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR 291

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D+++   +I G A+ G  EEA E++ ++Q EG++ N +TY  +L A    AAL  GK++H
Sbjct: 292 DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIH 351

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           S V +    S + +QN+LI MYS+CGS+  +R VFD M  + VISW AM+ G +K G G 
Sbjct: 352 SRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGA 411

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E + ++  M++   V+P+ VTY ++L+ CS     + G  +  ++V+   G   +     
Sbjct: 412 EALTVYQEMQQAG-VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA--GLATDAHVGN 468

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IE 461
            +V+M    G V +A +    M      A   +++G    H        +  RL E  ++
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQRDIVA-YNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           P+    Y+ + N  A++G  E    +  L+++     D
Sbjct: 528 PDKV-TYINMLNACANSGSLEWAREIHTLVRKGGFFSD 564



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 237/484 (48%), Gaps = 44/484 (9%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G ++   +Y  +L  C+  + L  G++VH H+I+    P  Y    LI  Y +C  + +A
Sbjct: 18  GAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEA 77

Query: 113 RKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           R+++ ++   ER V SW AM+  Y Q  +  +AL L  +M +    P+  T  + L+SC 
Sbjct: 78  RQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCK 137

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                E G++IH   +++     + V + +L+MYAK G I EAR VF+ + ++ VVS T 
Sbjct: 138 SPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTI 197

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
            I GYA  G  E A E+F+K++ EG++ N +TY SVL A S  AAL  GK VHS +L   
Sbjct: 198 TIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAG 257

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
             S   +  +L+ MY+KCGS    R+VF+ +  R +I+WN M+ G ++ G   E  E++N
Sbjct: 258 HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M+ E  V P+ +TY+ +L+ C +      G  +   +   K GF  +I     ++ M  
Sbjct: 318 QMQREG-VMPNKITYVILLNACVNSAALHWGKEIHSRVA--KAGFTSDIGVQNALISMYS 374

Query: 411 RAGRV-------------------------------GEALEFIKNMP---FEPTAAILGS 436
           R G +                                EAL   + M     EP      S
Sbjct: 375 RCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTS 434

Query: 437 LLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
           +L AC     ++ G  + Q+++E       + GN ++  N+Y+  G  +D  +V + M +
Sbjct: 435 ILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLV--NMYSMCGSVKDARQVFDRMIQ 492

Query: 494 KAVT 497
           + + 
Sbjct: 493 RDIV 496



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 159/295 (53%), Gaps = 2/295 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+E     Y ++LNAC +   L  G+R+H  +++       ++   L+  Y+ C 
Sbjct: 419 EMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCG 478

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DAR++FD M +R++V++ AMI  Y+      EAL LF R+     +P++ T+  +L 
Sbjct: 479 SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 538

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA +   E  ++IH+L+ K  F S   VG++L+  YAK G   +A  VFE + +R+V+S
Sbjct: 539 ACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVIS 598

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             AII G AQ G  ++A++LF ++++EG+  + VT+ S+L+A S    L  G++    + 
Sbjct: 599 WNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 658

Query: 288 R-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           + F I   +     ++D+  + G L  +  +   M  +     W A+L     HG
Sbjct: 659 QDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHG 713



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 159/333 (47%), Gaps = 5/333 (1%)

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           A+++   + +   + N   +  +L  C        G+Q+H  II+       Y  ++L++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 203 MYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           MY + G I EAR V++ L   ER V S  A++ GY Q G  E+A++L R++Q  G+  + 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T  S L++     AL  G+++H   ++  +   V + N +++MY+KCGS+  +R VFD 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M +++V+SW   + GY+  G      E+F  M +E  V P+ +TY++VL+  S       
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEG-VVPNRITYISVLNAFSSPAALKW 245

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G AV   I++   G E +      +V M  + G   +  +  + +      A    + G 
Sbjct: 246 GKAVHSRILNA--GHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 303

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
               Y  +  E   Q   E    N   YVIL N
Sbjct: 304 AEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/574 (42%), Positives = 380/574 (66%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y+TLL  C     L+ G+ VH H++ + ++  + ++  L+  Y +C  L  AR++FDEM 
Sbjct: 77  YNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMP 136

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++VSWT+MI+ Y+Q   + +AL LF RML    EPNEFT ++++  C     +  G+Q
Sbjct: 137 HRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQ 196

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+   K    S+++VGSSL+DMYA+ G + EA  VF+ L  ++ VS  A+I+GYA+ G 
Sbjct: 197 IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGE 256

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ LF ++Q EG      TY+++L++ S +  L  GK +H+H+++        + N+
Sbjct: 257 GEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNT 316

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ MY+K GS+  + +VFD + +  V+S N+ML+GY++HG+G+E  + F+ M     ++P
Sbjct: 317 LLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG-IEP 375

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L+VL+ CSH  + D G   F  +   K   EP++ HY  +VD+LGRAG + +A  
Sbjct: 376 NDITFLSVLTACSHARLLDEGKHYFGLMR--KYNIEPKVSHYATIVDLLGRAGLLDQAKS 433

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+ MP EPT AI G+LLGA ++H N ++G +  QR+ E++P   G + +L+N+YASAGR
Sbjct: 434 FIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGR 493

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WEDV +VR++MK+  V K+P  SW+E++  +H F A+D +HP +E++    ++L+ K KE
Sbjct: 494 WEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKE 553

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD S VL  VD+++KE  L  HSEKLAL+F L+ TP G+ IR++KN+R+C DCH+ 
Sbjct: 554 IGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSA 613

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K+VS V  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 614 IKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 167/305 (54%), Gaps = 4/305 (1%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           N + + AL+    M + G E       +L+  C    +   G+++HA   K      V++
Sbjct: 153 NDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFV 212

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y +C  L +A  +FD++  +N VSW A+I+ Y++K    EAL LF+RM R   
Sbjct: 213 GSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGY 272

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P EFT++ +L+SC+     E GK +H+ ++KS+ +   YVG++LL MYAK+G I +A  
Sbjct: 273 RPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEK 332

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ L + DVVSC +++ GYAQ GL +EA + F ++   G+  N +T+ SVLTA S    
Sbjct: 333 VFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARL 392

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLV 334
           L  GK     + ++ I   V    +++D+  + G L  ++   + M  E TV  W A+L 
Sbjct: 393 LDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLG 452

Query: 335 GYSKH 339
               H
Sbjct: 453 ASKMH 457


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 371/574 (64%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T + AC   + L   ++VHAH+  + +    +L   LI  Y KC  + +ARK+FDEMR
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT++I+ Y+Q     EA+ L   ML+   +PN FTFA++L +        +G+Q
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K ++   +YVGS+LLDMYA+ G +  A  VF+ L  ++ VS  A+ISG+A+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E A+  F ++   G  + + TY+SV ++++ L AL  GK VH+H+++          N+
Sbjct: 234 GETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNT 293

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K GS+  +R+VFD + ++ +++WN ML  ++++G+G+E V  F  MR+   +  
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSG-IYL 352

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT+L +L+ CSHGG+   G   F E++   D  EPEI+H+  VV +LGRAG +  AL 
Sbjct: 353 NQVTFLCILTACSHGGLVKEGKRYF-EMMKEYD-LEPEIDHFVTVVALLGRAGLLNFALV 410

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP EPTAA+ G+LL ACR+H N  +G+F    + E++P+++G  V+L N+YAS G+
Sbjct: 411 FIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQ 470

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR +MK   V K+P  SW+E++  +H F A+D +HP  EE+     Q+S K ++
Sbjct: 471 WDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRK 530

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPDM  VL  VD++++E  L  HSEKLAL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 531 EGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSA 590

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K++SKV+GR++ +RD NRFHH   G+CSC DYW
Sbjct: 591 FKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 3/262 (1%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P    + T +T+CA +   E  +++H+ +  S F    ++ +SL+ +Y K G + EAR V
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  +D+VS T++I+GYAQ  + EEAI L   +       N  T+AS+L A    A  
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G G+Q+H+  ++ +    V + ++L+DMY++CG +  +  VFD +  +  +SWNA++ G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G G   +  F  M   N  +    TY +V S  +  G  ++G  V   ++  +    
Sbjct: 229 ARKGDGETALMTFAEML-RNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMT 287

Query: 397 PEIEHYGCVVDMLGRAGRVGEA 418
               +   ++DM  ++G + +A
Sbjct: 288 AFAGN--TLLDMYAKSGSMIDA 307



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G E     Y ++ ++      L  G+ VHAHMIK+  +   +    L+  Y K  
Sbjct: 243 EMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSG 302

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+FD + ++++V+W  M++A++Q     EA++ F  M +S    N+ TF  +LT
Sbjct: 303 SMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILT 362

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GK+   ++ + + E  I    +++ +  +AG ++ A
Sbjct: 363 ACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFA 408


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/591 (40%), Positives = 374/591 (63%), Gaps = 2/591 (0%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            K   EM    LE     + ++L+ C N   L  G+++H  + ++  +  V L   LI  Y
Sbjct: 518  KLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMY 577

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
             +C  L DAR +F  ++ R+V+SWTAMI   + +    +A+ LF +M      P + TF+
Sbjct: 578  IRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFS 637

Query: 164  TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            ++L  C  +   + GK++ + I+ S +E    VG++L+  Y+K+G + +AR VF+ +P R
Sbjct: 638  SILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR 697

Query: 224  DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            D+VS   II+GYAQ GL + A+E   ++Q + ++ N  ++ S+L A S  +AL  GK+VH
Sbjct: 698  DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVH 757

Query: 284  SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            + +++ ++   V +  +LI MY+KCGS   ++ VFDN+ E+ V++WNAM+  Y++HG+  
Sbjct: 758  AEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLAS 817

Query: 344  EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
            + +  FN M +E  +KPD  T+ ++LS C+H G+   G  +F  + + + G  P IEHYG
Sbjct: 818  KALGFFNCMEKEG-IKPDGSTFTSILSACNHAGLVLEGYQIFSSM-ESEYGVLPTIEHYG 875

Query: 404  CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
            C+V +LGRA R  EA   I  MPF P AA+  +LLGACR+H N+ + E      +++   
Sbjct: 876  CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 935

Query: 464  NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
            N   Y++LSN+YA+AGRW+DV ++R +M+ + + K+PGRSWIE+D I+H F A+DRSHP 
Sbjct: 936  NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 995

Query: 524  REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
              E+ A++K+LSV+ +EAGY PD   VL+D+ +  +E  L  HSE+LA+ +GLI TP G 
Sbjct: 996  TAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGT 1055

Query: 584  PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PIR+ KNLRIC DCH  +KF+SK+ GR++  RD NRFH    G CSC DYW
Sbjct: 1056 PIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 221/405 (54%), Gaps = 4/405 (0%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  +   +M + G++     +  LL+AC N      G+ +H  ++++  +   +L   L
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y +C  L +A+ +F+  + R+V+SW +MI+ ++Q      A  LF  M   + EP+ 
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            TFA+VL+ C      ELGKQIH  I +S  +  + +G++L++MY + G + +AR VF  
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           L  RDV+S TA+I G A  G D +AIELF ++Q EG      T++S+L   +  A L  G
Sbjct: 593 LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEG 652

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K+V +++L         + N+LI  YSK GS+T +R VFD M  R ++SWN ++ GY+++
Sbjct: 653 KKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQN 712

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G+G+  VE    M+E++ V P+  +++++L+ CS     + G  V  EIV  K   + ++
Sbjct: 713 GLGQTAVEFAYQMQEQD-VVPNKFSFVSLLNACSSFSALEEGKRVHAEIV--KRKLQGDV 769

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
                ++ M  + G  GEA E   N+  E       +++ A   H
Sbjct: 770 RVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQH 813



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 237/447 (53%), Gaps = 4/447 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M + G+ +    Y ++LNAC   + L  G+ +H+H+ +  +   V +   LI  Y +C  
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++F  M +R+++SW A+I+ Y+++    EA+ L+ +M     +P   TF  +L++
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +  +  GK IH  I++S  +S+ ++ ++L++MY + G + EA+ VFE    RDV+S 
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            ++I+G+AQ G  E A +LF+++Q E +  + +T+ASVL+      AL  GKQ+H  +  
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V L N+LI+MY +CGSL  +R VF ++  R V+SW AM+ G +  G   + +EL
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M+ E   +P   T+ ++L  C+     D G  V   I++   G+E +      ++  
Sbjct: 621 FWQMQNEG-FRPVKSTFSSILKVCTSSACLDEGKKVIAYILN--SGYELDTGVGNALISA 677

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
             ++G + +A E    MP     +    + G  +        EF  Q   +    N  ++
Sbjct: 678 YSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSF 737

Query: 469 VILSNLYASAGRWEDVTRVR-ELMKEK 494
           V L N  +S    E+  RV  E++K K
Sbjct: 738 VSLLNACSSFSALEEGKRVHAEIVKRK 764



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 253/503 (50%), Gaps = 48/503 (9%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M++ G+      Y  LL+A      L  G+R+H   ++      + + T L+    +C 
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG 278

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A++ F    +R+VV + A+I+A +Q  H+ EA   + RM       N  T+ ++L 
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+ +   E GK IHS I +    S + +G++L+ MYA+ G + +AR +F  +P+RD++S
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             AII+GYA+     EA+ L++++Q EG+    VT+  +L+A +  +A   GK +H  +L
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R  I S   L N+L++MY +CGSL  ++ VF+    R VISWN+M+ G+++HG      +
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRGL--------AVFHEI 388
           LF  M+ E +++PD++T+ +VLSGC            HG + + GL        A+ +  
Sbjct: 519 LFQEMQNE-ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMY 577

Query: 389 VDC------KDGFEPEIEHYGCV--VDMLGRAGRVGEALEFI------KNMPFEPTAAIL 434
           + C      ++ F   ++H   +    M+G     GE ++ I      +N  F P  +  
Sbjct: 578 IRCGSLQDARNVFH-SLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTF 636

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVRELM 491
            S+L  C     +D G+ V   ++    E     GN +I  + Y+ +G   D   V + M
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALI--SAYSKSGSMTDAREVFDKM 694

Query: 492 KEKAVTKDPGRSWIELDQILHTF 514
                   P R  +  ++I+  +
Sbjct: 695 --------PSRDIVSWNKIIAGY 709



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 196/366 (53%), Gaps = 3/366 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C  +R L   +R+HA M++    P ++L   LI  Y KC  + DA ++F EM 
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V+SW ++IS Y+Q+    +A  LF  M  +   PN+ T+ ++LT+C      E GK+
Sbjct: 90  RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK 149

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHS IIK+ ++    V +SLL MY K G +  AR VF  +  RDVVS   ++  YAQ   
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E + LF ++  EG+  + VTY ++L A +  + L  GK++H   +   + S + +  +
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ M  +CG +  +++ F   ++R V+ +NA++   ++HG   E  E +  MR +  V  
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG-VAL 328

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  TYL++L+ CS     + G  +   I +  DG   +++    ++ M  R G + +A E
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISE--DGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 421 FIKNMP 426
               MP
Sbjct: 387 LFYTMP 392



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 236/486 (48%), Gaps = 42/486 (8%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G       Y ++L AC +   L  G+++H+ +IK  Y+    ++  L+  Y KC 
Sbjct: 118 EMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG 177

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++F  +  R+VVS+  M+  Y+QKA+  E L LF +M      P++ T+  +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + GK+IH L ++    S I VG++L+ M  + G +  A+  F+   +RDVV 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+I+  AQ G + EA E + +++ +G+  N  TY S+L A S   AL  GK +HSH+ 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                S V + N+LI MY++CG L  +R +F  M +R +ISWNA++ GY++     E + 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           L+  M+ E  VKP  VT+L +LS C++      G  +  +I+  + G +        +++
Sbjct: 418 LYKQMQSEG-VKPGRVTFLHLLSACANSSAYADGKMIHEDIL--RSGIKSNGHLANALMN 474

Query: 408 MLGRAGRVGEA----------------------------------LEFIKNMPFEPTAAI 433
           M  R G + EA                                   + ++N   EP    
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVREL 490
             S+L  C+    +++G+ +  R+ E   +   N GN +I  N+Y   G  +D   V   
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI--NMYIRCGSLQDARNVFHS 592

Query: 491 MKEKAV 496
           ++ + V
Sbjct: 593 LQHRDV 598



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 158/298 (53%), Gaps = 5/298 (1%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           TE    T+  +L +C         K+IH+ ++++     I++ + L++MY K   + +A 
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +P RDV+S  ++IS YAQ G  ++A +LF ++Q  G I N +TY S+LTA    A
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            L +GK++HS +++        +QNSL+ MY KCG L  +R+VF  +S R V+S+N ML 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            Y++    +E + LF  M  E  + PD VTY+ +L   +   M D G  +    V+  +G
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEG-ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE--EG 259

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH-YNVDIGE 451
              +I     +V M  R G V  A +  K    +    +  +L+ A   H +NV+  E
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA-DRDVVVYNALIAALAQHGHNVEAFE 316


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 371/574 (64%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   + AC   + L   +++H H+  + +    +L   LI  Y KC  + +A K+FD+MR
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++++VSWT++I+ Y+Q     EA+ L   ML+   +PN FTFA++L +        +G Q
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K ++   +YVGS+LLDMYA+ G++  A  VF+ L  ++ VS  A+ISG+A+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E A+ +F ++Q  G  + + TY+S+ + L+G+ AL  GK VH+H+++        + N+
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT 293

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++DMY+K GS+  +R+VF+ +  + +++WN+ML  ++++G+G+E V  F  MR+   +  
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG-IYL 352

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L +L+ CSHGG+   G   F  I +     EPEIEHY  VVD+LGRAG +  AL 
Sbjct: 353 NQITFLCILTACSHGGLVKEGKHYFDMIKEYN--LEPEIEHYVTVVDLLGRAGLLNYALV 410

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP EPTAA+ G+LL ACR+H N  +G+F    + +++P+++G  V+L N+YAS G 
Sbjct: 411 FIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGH 470

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR++MK   V K+P  SW+E+   +H F A+D +HP  EE+     ++S+K ++
Sbjct: 471 WDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRK 530

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPDM  VL  VDE+++E  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 531 EGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSA 590

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K++SKV+ R++ +RD NRFHH   G+CSCGDYW
Sbjct: 591 FKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 140/262 (53%), Gaps = 3/262 (1%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P    +   +T+CA +   +  ++IH  +  S FE   ++ +SL+ +Y K G + EA  V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ + ++D+VS T++I+GYAQ  +  EAI L   +       N  T+AS+L A    A  
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G G Q+H+  ++ +    V + ++L+DMY++CG +  +  VFD +  +  +SWNA++ G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G G   + +F  M + N  +    TY ++ SG +  G  ++G  V   +V  +    
Sbjct: 229 ARKGDGETALMVFAEM-QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLT 287

Query: 397 PEIEHYGCVVDMLGRAGRVGEA 418
             + +   ++DM  ++G + +A
Sbjct: 288 AFVGN--TMLDMYAKSGSMIDA 307



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G E     Y ++ +       L  G+ VHAHM+K+  +   ++   ++  Y K  
Sbjct: 243 EMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSG 302

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+F+ +  +++V+W +M++A++Q     EA++ F  M +S    N+ TF  +LT
Sbjct: 303 SMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILT 362

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GK    +I + N E  I    +++D+  +AG ++ A
Sbjct: 363 ACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/586 (42%), Positives = 375/586 (63%), Gaps = 5/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GL+     + +L  +C     L  G+++H H  K  +    Y++  L+  Y+ C C
Sbjct: 131 MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 187

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  ARK+FD+M  ++VVSW  MI AY+Q     EA+ LF RM  +  +PNE T   VLT+
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +   E  KQ+H  I ++    H  + S+L+D+Y K G    AR +F  +PE+++   
Sbjct: 248 CARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCW 307

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I+G+ +    EEA+ LF ++Q+ G+  + VT AS+L A + L AL  GK +H ++ +
Sbjct: 308 NIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK 367

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            +I   V L  +L+DMY+KCGS+  + RVF  M E+ V++W A++VG +  G G + +EL
Sbjct: 368 EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALEL 427

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F+ M + ++VKPD++T++ VL+ CSH G+ + G+A F+ + + K G +P IEHYGC+VDM
Sbjct: 428 FHEM-QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPN-KYGIQPSIEHYGCMVDM 485

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA + I+NMP  P   +L  LL ACR+H N+ + E   Q+L+E++P+N G Y
Sbjct: 486 LGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTY 545

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+Y+S   WE   ++RELM E+ + K PG S IE+  ++H F   D SHP   E+ 
Sbjct: 546 VLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIY 605

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +  +  + K AGYVPD S VL+D+DE++KE  L  HSEKLA+ FGL+ T  G PIRV+
Sbjct: 606 ETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVV 665

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH+  KF+S+VY R++ +RD+NRFHH  +G+CSC D+W
Sbjct: 666 KNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 187/358 (52%), Gaps = 12/358 (3%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAM 130
           T+   +++HA M++TC     +  ++++ F   +    L  AR +F+++      +  ++
Sbjct: 52  TMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSI 111

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I  Y+ K    +A+  +  M+    +P+ FTF ++  SC        GKQ+H    K  F
Sbjct: 112 IRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGF 168

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
            S  Y+ ++L++MY+  G +  AR VF+ +  + VVS   +I  YAQ  L  EAI+LFR+
Sbjct: 169 ASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRR 228

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +++  +  N +T  +VLTA +    L   KQVH ++    I  + VL ++L+D+Y KCG 
Sbjct: 229 MEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGC 288

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
              +R +F+ M E+ +  WN M+ G+ +     E + LFN M + + VK D VT  ++L 
Sbjct: 289 YPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM-QLSGVKGDKVTMASLLI 347

Query: 371 GCSHGGMEDRG--LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            C+H G  + G  L V+ E    K+  E ++     +VDM  + G +  A+   + MP
Sbjct: 348 ACTHLGALELGKWLHVYIE----KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 401



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 19/116 (16%)

Query: 267 LTALSGLAALGHGKQVHSHVLRF----------EIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           L +L     +   KQ+H+ +LR           +I ++  L +S        GSL Y+R 
Sbjct: 44  LLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDS--------GSLPYARL 95

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           VF+ +   T  + N+++ GY+   + R+ +  + LM  +  + PD  T+ ++   C
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQG-LDPDRFTFPSLFKSC 150


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/568 (42%), Positives = 372/568 (65%), Gaps = 4/568 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFDEM 119
           Y  LL  C     +  G+ VHAH++ + +    + L+  ++  Y KC CL DAR+MFDEM
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             +++V+WTA+I+ +SQ     +AL LF +MLR   +PN FT +++L +     G + G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H+  +K  ++S +YVGS+L+DMYA+ G +  A+  F+ +P +  VS  A+ISG+A+ G
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E A+ L  K+Q +     + TY+SVL+A + + AL  GK VH+H+++  +     + N
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+DMY+K GS+  ++RVFD + +  V+SWN ML G ++HG+G+E ++ F  M     ++
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG-IE 388

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +++L VL+ CSH G+ D GL  F  +   K   EP++ HY   VD+LGR G +  A 
Sbjct: 389 PNEISFLCVLTACSHSGLLDEGLYYFELMKKYK--VEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI+ MP EPTAA+ G+LLGACR+H N+++G +  +R  E++P ++G  ++LSN+YASAG
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAG 506

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RW DV +VR++MKE  V K P  SW+E++  +H F A+D +HP  +E+  K +++S K K
Sbjct: 507 RWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIK 566

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E GYVPD S VL  VD++++E+ L  HSEKLAL F L+ TP G+PIR+ KN+R+C DCH 
Sbjct: 567 EIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHA 626

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
             KFVSKV  R++ +RD NRFH   +G+
Sbjct: 627 AIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 161/291 (55%), Gaps = 9/291 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG +       +LL A  ++  L  G ++HA  +K  Y+  VY+ + L+  Y +C 
Sbjct: 179 QMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A+  FD M  ++ VSW A+IS +++K     AL+L  +M R + +P  FT+++VL+
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS 298

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     E GK +H+ +IKS  +   ++G++LLDMYAKAG I +A+ VF+ L + DVVS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG----KQVH 283
              +++G AQ GL +E ++ F ++   G+  N +++  VLTA S    L  G    + + 
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            + +  ++P YV    + +D+  + G L  + R    M  E T   W A+L
Sbjct: 419 KYKVEPDVPHYV----TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 160/294 (54%), Gaps = 5/294 (1%)

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRI 210
           R    P+   ++ +L  C      E G+ +H+ ++ S+F ++H+ + + +++MYAK G +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +AR +F+ +P +D+V+ TA+I+G++Q     +A+ LF ++   G   N+ T +S+L A 
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKAS 199

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
                L  G Q+H+  L++   S V + ++L+DMY++CG +  ++  FD M  ++ +SWN
Sbjct: 200 GSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWN 259

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++ G+++ G G   + L   M+ +N  +P   TY +VLS C+  G  ++G  V   ++ 
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVLSACASIGALEQGKWVHAHMI- 317

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            K G +        ++DM  +AG + +A      +  +P      ++L  C  H
Sbjct: 318 -KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/599 (40%), Positives = 383/599 (63%), Gaps = 6/599 (1%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +G++ +A +   +M   G+E     + ++L AC     L+ G+++H  +IK  Y     +
Sbjct: 385 HGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRV 444

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           RT L+  Y KC  L DAR +F+ + ++NVV+W AMI+AY Q      A+  F  +L+   
Sbjct: 445 RTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGI 504

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+  TF ++L  C      ELGK + SLII++ FES +++ ++L+ M+   G +  A  
Sbjct: 505 KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  +PERD+VS   II+G+ Q G ++ A + F+ +Q  G+  + +T+  +L A +   A
Sbjct: 565 LFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEA 624

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+++H+ +    +   VV+   LI MY+KCGS+  +  VF N+ ++ V SW +M+ G
Sbjct: 625 LTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITG 684

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y++HG G+E +ELF  M++E  VKPD +T++  LS C+H G+   GL  F  + D     
Sbjct: 685 YAQHGRGKEALELFCQMQQEG-VKPDWITFVGALSACAHAGLIKEGLHHFESMKDFN--I 741

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           EP +EHYGC+VD+ GRAG + EA+EFI  M  +P + + G+LLGAC+VH +V++ E V Q
Sbjct: 742 EPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQ 801

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           + +E++P + G YVILSN+YA+AG W++VT++R++M ++ V K PG+SWIE+D  +H F 
Sbjct: 802 KKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFC 861

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           + D++HP  EE+ A++ +L ++ K+ GYVPD   VL+DV++ +KE  L  HSE+LA+ +G
Sbjct: 862 SDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYG 921

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ TP   PI + KNLR+C DCH   K +SK+  R++  RD NRFHH  +G CSCGD+W
Sbjct: 922 LLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 247/445 (55%), Gaps = 9/445 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLG---LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  L   GQL++A++ + ++    +++  + Y +LL  C+  + L  G+R+H H+  +  
Sbjct: 76  LNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI 135

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +P +++   LI  Y KC   + A+++FDEM +++V SW  ++  Y Q     EA  L  +
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M++   +P+++TF  +L +CA A   + G ++ SLI+ + +++ ++VG++L++M+ K G 
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGG 255

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +A  VF  LP RD+++ T++I+G A+    ++A  LF+ ++ EG+  + V + S+L A
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +   AL  GK+VH+ +    + + + +  +L+ MY+KCGS+  +  VF+ +  R V+SW
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSW 375

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            AM+ G+++HG   E    FN M E   ++P+ VT++++L  CS      +G  +   I+
Sbjct: 376 TAMIAGFAQHGRMEEAFLFFNKMIESG-IEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             K G+  +      ++ M  + G + +A    + +  +   A   +++ A   H   D 
Sbjct: 435 --KAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA-WNAMITAYVQHEKYDN 491

Query: 450 GEFVGQRLME--IEPENAGNYVILS 472
                Q L++  I+P+++    IL+
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILN 516



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 184/311 (59%), Gaps = 1/311 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC +   L  G+RVHA M +      +Y+ T L+  Y KC  + DA ++F+ ++ R
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSWTAMI+ ++Q     EA   F +M+ S  EPN  TF ++L +C+     + G+QIH
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             IIK+ + +   V ++LL MYAK G + +AR VFE + +++VV+  A+I+ Y Q    +
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A+  F+ L  EG+  +  T+ S+L       AL  GK V S ++R    S + ++N+L+
Sbjct: 491 NAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALV 550

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            M+  CG L  +  +F++M ER ++SWN ++ G+ +HG  +   + F +M +E+ VKPD 
Sbjct: 551 SMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM-QESGVKPDQ 609

Query: 363 VTYLAVLSGCS 373
           +T+  +L+ C+
Sbjct: 610 ITFTGLLNACA 620



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 190/410 (46%), Gaps = 36/410 (8%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           +N     A ++  S+     EA+ + + +     + +  T++++L  C        G++I
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ I  S  +  I++ + L+ MYAK G  + A+ +F+ +P++DV S   ++ GY Q    
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EEA  L  ++  +G+  +  T+  +L A +    +  G ++ S +L     + + +  +L
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTAL 246

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I+M+ KCG +  + +VF+N+  R +I+W +M+ G ++H   ++   LF +M EE  V+PD
Sbjct: 247 INMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG-VQPD 305

Query: 362 SVTYLAVLSGCSHGGMEDRG----------------------LAVFHEIVDCKDGFE--- 396
            V ++++L  C+H    ++G                      L+++ +    +D  E   
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFN 365

Query: 397 ----PEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDI 449
                 +  +  ++    + GR+ EA  F   M     EP      S+LGAC     +  
Sbjct: 366 LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ 425

Query: 450 GEFVGQRLMEIE--PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           G  +  R+++     ++     +LS +YA  G   D   V E + ++ V 
Sbjct: 426 GRQIHDRIIKAGYITDDRVRTALLS-MYAKCGSLMDARNVFERISKQNVV 474


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/630 (41%), Positives = 380/630 (60%), Gaps = 12/630 (1%)

Query: 9   RAFSSLTFTQQQLTVPSFP-PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE---YDTL 64
           +A S L   +  L   + P P        C    L +A+  M  +     F +   Y  L
Sbjct: 2   KAISKLKGMKPPLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSEL 61

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           +  C  +  ++ G+RVH H+    Y P +++   L+  Y K   L +A  +FDEM ERNV
Sbjct: 62  IKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNV 121

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSWT MISAYS K +  +AL   I M R    PN FT+++VL +C G       +Q+H  
Sbjct: 122 VSWTTMISAYSNKLND-KALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCG 177

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           IIK+  ES ++V S+L+D+Y+K   +  A GVF+ +P RD+V   +II G+AQ     EA
Sbjct: 178 IIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEA 237

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF++++  G +++  T  SVL A +GLA L  G+QVH HVL+F+    ++L N+LIDM
Sbjct: 238 LNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFD--QDLILNNALIDM 295

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y KCGSL  +   F  M E+ VISW+ M+ G +++G  R+ +ELF  M+E    +P+ +T
Sbjct: 296 YCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGS-RPNYIT 354

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            L VL  CSH G+ ++G   F  +     G +P  EHYGC++D+LGRAGR+ EA++ I  
Sbjct: 355 VLGVLFACSHAGLVEKGWYYFRSMKKLF-GVDPGREHYGCLIDLLGRAGRLDEAVKLIHE 413

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M  EP +    +LLGACRVH NVD+  +  ++++E+EPE+AG Y++LSN+YA+  RWEDV
Sbjct: 414 MECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDV 473

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
             VR+ M  + + K PG SWIE+D+ +H F   D SHP  EE+  ++  L  +    GYV
Sbjct: 474 AEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYV 533

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD + VL D++ EQKE  L  HSEKLA+ FGL+       +R+ KNLRIC DCH FAK V
Sbjct: 534 PDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVV 593

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           S++  R + +RD  R+HH  +G CSCGDYW
Sbjct: 594 SRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/606 (41%), Positives = 366/606 (60%), Gaps = 38/606 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++AC N   LR G+ +H + IK       + +   L+ +Y KC  +  AR+ F  +++ +
Sbjct: 369 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 428

Query: 124 VVSWTAMISAYSQKAHSFEALNL-----------------------------------FI 148
           +VSW AM++ Y+ +    EA+ L                                   F 
Sbjct: 429 LVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ 488

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RM     +PN  T +  L +C      +LGK+IH  +++++ E    VGS+L+ MY+   
Sbjct: 489 RMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCD 548

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  A  VF  L  RDVV   +IIS  AQ G    A++L R++ +  +  N VT  S L 
Sbjct: 549 SLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A S LAAL  GK++H  ++R  + +   + NSLIDMY +CGS+  SRR+FD M +R ++S
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN M+  Y  HG G + V LF   R    +KP+ +T+  +LS CSH G+ + G   F ++
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQQFRTMG-LKPNHITFTNLLSACSHSGLIEEGWKYF-KM 726

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           +  +   +P +E Y C+VD+L RAG+  E LEFI+ MPFEP AA+ GSLLGACR+H N D
Sbjct: 727 MKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPD 786

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E+  + L E+EP+++GNYV+++N+Y++AGRWED  ++R LMKE+ VTK PG SWIE+ 
Sbjct: 787 LAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 846

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
           + LH+F   D SHP+ E++SAK++ L    KE GYVPD + VL DVDE++KE  L GHSE
Sbjct: 847 RKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSE 906

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           K+AL FGLI T  G P+R+IKNLR+C DCH+  KF+SKV  R + +RD  RFHH V+G C
Sbjct: 907 KIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVC 966

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 967 SCGDYW 972



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 76/425 (17%)

Query: 39  NGQLTKALIEMATLGL---EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG L  A + ++++ L   +   E Y ++L  C     LR G +VHA ++        +L
Sbjct: 67  NGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFL 126

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            +RL+  Y +  C+ DAR+MFD+M ERNV SWTA++  Y       E + LF  M+    
Sbjct: 127 GSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV 186

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+ F F  V  +C+    + +GK ++  ++   FE +  V  S+LDM+ K GR+  AR 
Sbjct: 187 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 246

Query: 216 VFECLPERDV-----------------------------------VSCTAIISGYAQLGL 240
            FE +  +DV                                   V+  AIISGYAQ G 
Sbjct: 247 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ 306

Query: 241 DEE------------------------------------AIELFRKLQVEGMISNYVTYA 264
            EE                                    A+ +FRK+ +EG+  N +T A
Sbjct: 307 FEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIA 366

Query: 265 SVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           S ++A + L+ L HG+++H + ++  E+ S +++ NSL+D Y+KC S+  +RR F  + +
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ 426

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
             ++SWNAML GY+  G   E +EL + M+ +  ++PD +T+  +++G +  G     L 
Sbjct: 427 TDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG-IEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 384 VFHEI 388
            F  +
Sbjct: 486 FFQRM 490



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 204/442 (46%), Gaps = 57/442 (12%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEE---------YDTLLNACVNQRTLRGGQRVHAHMIKT 87
           C  G +    I+   + +  RF E         ++ +++   ++   +   +  + M  +
Sbjct: 226 CVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLS 285

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-----ERNVVSWTAMISAYSQKAHSFE 142
             +P       +I  Y +     +A K F EM      + NVVSWTA+I+   Q  + FE
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLL 201
           AL++F +M+    +PN  T A+ +++C        G++IH   IK    +S + VG+SL+
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           D YAK   +  AR  F  + + D+VS  A+++GYA  G  EEAIEL  +++ +G+  + +
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 262 TYASVLTALS-----------------------------GLAALGH------GKQVHSHV 286
           T+  ++T  +                              LAA G       GK++H +V
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           LR  I     + ++LI MYS C SL  +  VF  +S R V+ WN+++   ++ G     V
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG---RSV 582

Query: 347 ELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
              +L+RE N   V+ ++VT ++ L  CS      +G  +   I+ C  G +        
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC--GLDTCNFILNS 640

Query: 405 VVDMLGRAGRVGEALEFIKNMP 426
           ++DM GR G + ++      MP
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMP 662



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 153/292 (52%), Gaps = 7/292 (2%)

Query: 155 TEPNEFT--FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           T P+E    +A++L  C   +   LG Q+H+ ++ +  +   ++GS LL++Y + G + +
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F+ + ER+V S TAI+  Y  LG  EE I+LF  +  EG+  ++  +  V  A S 
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L     GK V+ ++L         ++ S++DM+ KCG +  +RR F+ +  + V  WN M
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY+  G  ++ ++  + M+    VKPD VT+ A++SG +  G  +     F E+   K
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSG-VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLK 321

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGAC 441
           D F+P +  +  ++    + G   EAL   + M  E   P +  + S + AC
Sbjct: 322 D-FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 145/287 (50%), Gaps = 2/287 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G++         L AC   R L+ G+ +H ++++        + + LI  Y+ C+ 
Sbjct: 490 MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDS 549

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A  +F E+  R+VV W ++ISA +Q   S  AL+L   M  S+ E N  T  + L +
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+       GK+IH  II+   ++  ++ +SL+DMY + G I ++R +F+ +P+RD+VS 
Sbjct: 610 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 669

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVL 287
             +IS Y   G   +A+ LF++ +  G+  N++T+ ++L+A S    +  G K       
Sbjct: 670 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 729

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            + +   V     ++D+ S+ G    +    + M  E     W ++L
Sbjct: 730 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM    +E+      + L AC     LR G+ +H  +I+       ++   LI  Y +
Sbjct: 588 LREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGR 647

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  +R++FD M +R++VSW  MIS Y       +A+NLF +      +PN  TF  +
Sbjct: 648 CGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNL 707

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           L++C+ +   E G K    +  +   +  +   + ++D+ ++AG+ +E     E +P   
Sbjct: 708 LSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEP 767

Query: 225 VVSCTAIISGYAQL----GLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             +    + G  ++     L E A     +L+ +    NYV  A++ +A
Sbjct: 768 NAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSS-GNYVLMANIYSA 815


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/598 (41%), Positives = 389/598 (65%), Gaps = 13/598 (2%)

Query: 48  EMATLGLEMRFEEYDT-------LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           E   L L+M F  Y+        +++AC N   L  GQ++H+  I+        +   LI
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 101 VFYNKCEC---LSDARKMFDEMRERNVVSWTAMISAYSQKA-HSFEALNLFIRMLRSDTE 156
             Y KC     +  ARK+FD++ + NV SWTAMI+ Y QK  +  EAL+LF  M+ +   
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN FTF++ L +CA      +G+Q+ +  +K  F S   V +SL+ MYA++GRI +AR  
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ L E++++S   +I  YA+    EEA+ELF +++ +GM ++  T+AS+L+  + +  +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G G+Q+H+ V++  +     + N+LI MYS+CG++  + +VF++M +R VISW +++ G+
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           +KHG   + +ELF+ M EE  V+P+ VTY+AVLS CSH G+ + G   F  +   + G  
Sbjct: 554 AKHGFATQALELFHKMLEEG-VRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYT-EHGVI 611

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P +EHY C+VD+LGR+G + EA++FI +MP++  A +  + LGACRVH N+++G+   + 
Sbjct: 612 PRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKM 671

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHA 516
           ++E EP +   Y++LSNLYAS  +W++V+ +R+ MKEK + K+ G SW+E++  +H F+ 
Sbjct: 672 IIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYV 731

Query: 517 SDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGL 576
            D SHP   E+  +++ LSVK K+ GYVP++  VL+DV+EEQKEK+L  HSEK+A+ FGL
Sbjct: 732 GDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGL 791

Query: 577 IGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I T +  PIRV KNLRIC DCH+  K++S   GR++ +RD NRFHHI +G CSC +YW
Sbjct: 792 ISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 203/365 (55%), Gaps = 9/365 (2%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCEC-LSDARKMFDEMRERNV 124
           AC     +  G  +   +IKT Y +  V +   LI  + K    L  A K+F++M ERN 
Sbjct: 177 ACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+WT MI+   Q  ++ EA++LF+ M+ S  EP+ FT + V+++CA      LG+Q+HS 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 185 IIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFECLPERDVVSCTAIISGYAQL-GL 240
            I+        VG  L++MYAK    G +  AR +F+ + + +V S TA+I+GY Q  G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           DEEA++LFR + +  +I N+ T++S L A + LAAL  G+QV +H ++    S   + NS
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY++ G +  +R+ FD + E+ +IS+N ++  Y+K+    E +ELFN + E+  +  
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI-EDQGMGA 475

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            + T+ ++LSG +  G   +G  +   ++  K G +        ++ M  R G +  A +
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVI--KSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 421 FIKNM 425
             ++M
Sbjct: 534 VFEDM 538



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 203/411 (49%), Gaps = 16/411 (3%)

Query: 21  LTVPSFP-PNPQNLKTL--CSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTL 74
           L  P+F  PNP   + +   +NG+L KA   L  M   G     + Y   L  C+  R+ 
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISA 133
             G  VH  + ++  +        LI  Y+KC     A  +F  M   R+++SW+AM+S 
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSC 142

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ES 192
           ++     F AL  F+ M+ +   PNE+ FA    +C+ A    +G  I   +IK+ + +S
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQS 202

Query: 193 HIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            + VG  L+DM+ K  G +  A  VFE +PER+ V+ T +I+   Q G   EAI+LF  +
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDM 262

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC--- 308
              G   +  T + V++A + +  L  G+Q+HS  +R  +     +   LI+MY+KC   
Sbjct: 263 IFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD 322

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGY-SKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           GS+  +R++FD + +  V SW AM+ GY  K G   E ++LF  M   + V P+  T+ +
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH-VIPNHFTFSS 381

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            L  C++      G  VF   V  K GF         ++ M  R+GR+ +A
Sbjct: 382 TLKACANLAALRIGEQVFTHAV--KLGFSSVNCVANSLISMYARSGRIDDA 430


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/599 (41%), Positives = 388/599 (64%), Gaps = 6/599 (1%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+     +EM   G E        +++AC N   L  GQ++H+  I+        +   L
Sbjct: 253 GEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312

Query: 100 IVFYNKCEC---LSDARKMFDEMRERNVVSWTAMISAYSQKA-HSFEALNLFIRMLRSDT 155
           I  Y KC     +  ARK+FD++ + NV SWTAMI+ Y QK  +  EAL+LF  M+ +  
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN FTF++ L +CA      +G+Q+ +  +K  F S   V +SL+ MYA++GRI +AR 
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
            F+ L E++++S   +I  YA+    EEA+ELF +++ +GM ++  T+AS+L+  + +  
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +G G+Q+H+ V++  +     + N+LI MYS+CG++  + +VF++M +R VISW +++ G
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           ++KHG   + +ELF+ M EE  V+P+ VTY+AVLS CSH G+ + G   F  +   + G 
Sbjct: 553 FAKHGFATQALELFHKMLEEG-VRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYT-EHGV 610

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P +EHY C+VD+LGR+G + EA++FI +MP++  A +  + LGACRVH N+++G+   +
Sbjct: 611 IPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAK 670

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
            ++E EP +   Y++LSNLYAS  +W++V+ +R+ MKEK + K+ G SW+E++  +H F+
Sbjct: 671 MIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFY 730

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
             D SHP   E+  +++ LSVK K+ GYVP++  VL+DV+EEQKEK+L  HSEK+A+ FG
Sbjct: 731 VGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFG 790

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LI T +  PIRV KNLRIC DCH+  K++S   GR++ +RD NRFHHI +G CSC +YW
Sbjct: 791 LISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 203/365 (55%), Gaps = 9/365 (2%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCEC-LSDARKMFDEMRERNV 124
           AC     +  G  +   ++KT Y +  V +   LI  + K    L  A K+F++M ERN 
Sbjct: 177 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+WT MI+   Q  ++ EA++LF+ M+ S  EP+ FT + V+++CA      LG+Q+HS 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 185 IIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFECLPERDVVSCTAIISGYAQL-GL 240
            I+        VG  L++MYAK    G +  AR +F+ + + +V S TA+I+GY Q  G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           DEEA++LFR + +  +I N+ T++S L A + LAAL  G+QV +H ++    S   + NS
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY++ G +  +R+ FD + E+ +IS+N ++  Y+K+    E +ELFN + E+  +  
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI-EDQGMGA 475

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            + T+ ++LSG +  G   +G  +   ++  K G +        ++ M  R G +  A +
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVI--KSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 421 FIKNM 425
             ++M
Sbjct: 534 VFEDM 538



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 205/411 (49%), Gaps = 16/411 (3%)

Query: 21  LTVPSFP-PNPQNLKTL--CSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTL 74
           L  P+F  PNP   + +   +NG+L KA   L  M   G     + Y   L  C+  R+ 
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISA 133
             G  VH  + ++  +        LI  Y+KC     A  +F  M   R+++SW+AM+S 
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSC 142

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ES 192
           ++     F AL  F+ M+ +   PNE+ FA    +C+ A    +G  I   ++K+ + +S
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQS 202

Query: 193 HIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            + VG  L+DM+ K  G +  A  VFE +PER+ V+ T +I+   Q G   EAI+LF ++
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEM 262

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC--- 308
            + G   +  T + V++A + +  L  G+Q+HS  +R  +     +   LI+MY+KC   
Sbjct: 263 ILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD 322

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGY-SKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           GS+  +R++FD + +  V SW AM+ GY  K G   E ++LF  M   + V P+  T+ +
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH-VIPNHFTFSS 381

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            L  C++      G  VF   V  K GF         ++ M  R+GR+ +A
Sbjct: 382 TLKACANLAALRIGEQVFTHAV--KLGFSSVNCVANSLISMYARSGRIDDA 430


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/587 (42%), Positives = 378/587 (64%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +G       +  +L AC+       G+ VH  ++KTCY   +Y+   L+  Y K  
Sbjct: 132 EMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFG 191

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             +D  ++F+EM + +V+ W+ MIS Y+Q   S EA+ LF +M R+   PN+FTFA+VL 
Sbjct: 192 DANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQ 251

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SCA     +LGKQ+H  ++K   + +++V ++L+D+YAK GR+  +  +F  LP R+ V+
Sbjct: 252 SCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVT 311

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I GY Q G  ++A+ L++ +    + ++ VTY+SVL A + LAA+  G Q+HS  L
Sbjct: 312 WNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSL 371

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +      VV+ N+LIDMY+KCGS+  +R VFD +SER  ISWNAM+ GYS HG+  E ++
Sbjct: 372 KTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALK 431

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F +M+E   V P+ +T++++LS CS+ G+ D G   F  +V    G EP +EHY C+V 
Sbjct: 432 AFQMMQETECV-PNKLTFVSILSACSNAGLLDIGQNYFKSMVQ-DYGIEPCMEHYTCMVW 489

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGR+G + +A++ I+ +P EP   +  +LLGAC +H +VD+G    Q++++I+P++   
Sbjct: 490 LLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEAT 549

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           +V+LSN+YA   RW  V  VR+ MK K V K+PG SWIE   I+H F   D SHP  + +
Sbjct: 550 HVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMI 609

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
           S  ++ L++K ++AGYVPD++ VL DV++++K++ L  HSE+LAL FGLI TP    IR+
Sbjct: 610 SGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRI 669

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +KNLRIC DCH+  K +SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 670 LKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RN VS+  +I  Y Q     E ++LF R+ R   E N F F T+L         EL 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             +H+ I K   ES+ +VG++L+D YA  G ++ AR  F+ +  +D+VS T +++ YA+ 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVV 296
              +++++LF ++++ G   N+ T+A VL A  GL A   GK VH  VL+  +E+  YV 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +   L+D+Y+K G      RVF+ M +  VI W+ M+  Y++    RE VELF  MR   
Sbjct: 181 V--GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA- 237

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V P+  T+ +VL  C+       G  V   ++  K G +  +     ++D+  + GR+ 
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHVL--KVGLDGNVFVSNALMDVYAKCGRLD 295

Query: 417 EALEFIKNMP 426
            +++    +P
Sbjct: 296 NSMKLFMELP 305


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/630 (38%), Positives = 393/630 (62%), Gaps = 13/630 (2%)

Query: 5   KKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTL 64
           ++ S+ ++S       ++ PS P +   L+ L         L+    L    R   Y ++
Sbjct: 17  RRTSKPYTSAAHRAVPISFPSSPASSTGLREL--------DLLHAGELAPTPRL--YHSI 66

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           + AC   + L G + +HAH+ ++C     +L   LI  Y KC  +SDAR +FD+M  R+V
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSWT +I+ Y+Q     EA+ L   MLR+   PN FTF ++L +     G  +G+Q+H+L
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHAL 186

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            +K N++  +YVGS+LLDMYA+  ++  A  VF+ L  ++ VS  A+I+G+A+    E  
Sbjct: 187 AVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETT 246

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           +  F ++Q  G  + + TY+S+ +A + + AL  G+ VH+H+++        + N+++ M
Sbjct: 247 LMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGM 306

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+K GS+  +R+VFD M +R +++WN ML   +++G+G+E V  F  +R+   ++ + +T
Sbjct: 307 YAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG-IQLNQIT 365

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           +L+VL+ CSHGG+   G   F  + D     +PEI+HY   VD+LGRAG + EAL F+  
Sbjct: 366 FLSVLTACSHGGLVKEGKHYFDMMKDYN--VQPEIDHYVSFVDLLGRAGLLKEALIFVFK 423

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP EPTAA+ G+LLGACR+H N  +G++    + E++P++ G  V+L N+YAS G+W D 
Sbjct: 424 MPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDA 483

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            RVR++MK   V K+P  SW++++  +H F A D +HP   ++    ++++++ K+AGYV
Sbjct: 484 ARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYV 543

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P+ + VL  ++E+++E  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+  K+V
Sbjct: 544 PNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYV 603

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKV+ R++ +RD NRFHH  EG+CSCGDYW
Sbjct: 604 SKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/594 (41%), Positives = 382/594 (64%), Gaps = 2/594 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q  + L +M   G+        + L AC        G+++H+ ++K      +++   L+
Sbjct: 342 QALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLV 401

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC+ L DAR  F+ + E+++++W A+IS YSQ     EAL+LF+ M +     N+ 
Sbjct: 402 DMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT 461

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           T +T+L S AG     + +Q+H L +KS F S IYV +SL+D Y K   + +A  +FE  
Sbjct: 462 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 521

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
              D+VS T++I+ YAQ G  EEA++LF ++Q   +  +    +S+L A + L+A   GK
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           Q+H H+L++     +   NSL++MY+KCGS+  + R F  ++ER ++SW+AM+ G ++HG
Sbjct: 582 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 641

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
            GR+ ++LFN M +E  V P+ +T ++VL  C+H G+      ++ E ++   GF+P  E
Sbjct: 642 HGRQALQLFNQMLKEG-VSPNHITLVSVLGACNHAGLVTEA-KLYFESMEELFGFKPMQE 699

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C++D+LGRAG++ EA+E +  MPFE  A++ G+LLGA R+H +V++G    + L  +
Sbjct: 700 HYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFIL 759

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           EPE +G +V+L+N+YASAG+WE+V  VR LM++  V K+PG SWIE+   ++TF   DRS
Sbjct: 760 EPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRS 819

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           H   +E+ AK+ +LS    +AGYVP +   L+DV++ +KE +L  HSEKLA+ FGLI TP
Sbjct: 820 HYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATP 879

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +GAPIRV KNLR+CVDCH   K++ K+  R++ +RD NRFHH  +G+CSCGDYW
Sbjct: 880 QGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/500 (28%), Positives = 248/500 (49%), Gaps = 52/500 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G    A  EM  LG++     + ++L AC   + LR G++VH  ++ + +   V++   L
Sbjct: 139 GGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTL 198

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +V Y KC+   D++++FDE+ ERNVVSW A+ S Y Q     EA+ LF  M+ S  +PNE
Sbjct: 199 VVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNE 258

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           F+ ++++ +C G      GK IH  +IK  ++   +  ++L+DMYAK G + +A  VFE 
Sbjct: 259 FSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEK 318

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           + + D+VS  A+I+G       E+A+EL  +++  G+  N  T +S L A +G+     G
Sbjct: 319 IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG 378

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           +Q+HS +++ ++ S + +   L+DMYSKC  L  +R  F+ + E+ +I+WNA++ GYS++
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 438

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI-----VDCKDG 394
               E + LF  M +E  +  +  T   +L   +       GL V H       +  K G
Sbjct: 439 WEDMEALSLFVEMHKEG-IGFNQTTLSTILKSTA-------GLQVVHVCRQVHGLSVKSG 490

Query: 395 FEPEIEHYGCVVDMLGRAGRV------------GEALEF--------------------- 421
           F  +I     ++D  G+   V            G+ + F                     
Sbjct: 491 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 550

Query: 422 -IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYAS 477
            +++M  +P   +  SLL AC      + G+ +   +++   +    AGN ++  N+YA 
Sbjct: 551 EMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV--NMYAK 608

Query: 478 AGRWEDVTRVRELMKEKAVT 497
            G  +D  R    + E+ + 
Sbjct: 609 CGSIDDAGRAFSELTERGIV 628



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 15/362 (4%)

Query: 22  TVPSFPPNPQN--LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79
           TVP F  +PQ   +  L   G  T   +             Y  LL+ C   ++LR G +
Sbjct: 30  TVPQFSQDPQTTAILNLIDKGNFTPTSVS------------YSKLLSQCCTTKSLRPGLQ 77

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HAH+ K+       +R  LI  Y+KC     ARK+ DE  E ++VSW+A+IS Y+Q   
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
              AL  F  M     + NEFTF++VL +C+      +GKQ+H +++ S FE  ++V ++
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L+ MYAK     +++ +F+ +PER+VVS  A+ S Y Q+    EA+ LF ++ + G+  N
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPN 257

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             + +S++ A +GL     GK +H ++++          N+L+DMY+K G L  +  VF+
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            + +  ++SWNA++ G   H    + +EL   M+    + P+  T  + L  C+  G+++
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSG-ICPNIFTLSSALKACAGMGLKE 376

Query: 380 RG 381
            G
Sbjct: 377 LG 378



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 40/303 (13%)

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I    Q   D +   +   +         V+Y+ +L+      +L  G Q+H+H+ +  
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +     ++N LI++YSKC +  Y+R++ D  SE  ++SW+A++ GY+++G+G   +  F+
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 351 LMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRG----------LAVFH--- 386
            M     VK +  T+ +VL  CS           HG +   G          L V +   
Sbjct: 147 EMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 387 -EIVDCKDGFE--PE--IEHYGCVVDMLGRAGRVGEALEFIKNMPF---EPTAAILGSLL 438
            E +D K  F+  PE  +  +  +     +    GEA+     M     +P    L S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 439 GACRVHYNVDIGEFVGQRLMEI----EPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            AC    +   G+ +   L+++    +P +A   V   ++YA  G   D   V E +K+ 
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV---DMYAKVGDLADAISVFEKIKQP 322

Query: 495 AVT 497
            + 
Sbjct: 323 DIV 325


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/575 (42%), Positives = 375/575 (65%), Gaps = 4/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L+AC +   L  G+++HA ++++ +   V + T L   Y KC  + DAR++F+ + 
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V++W  MI          EA  +F RML+    P+  T+  +L++CA   G   GK+
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE 368

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+  +K    S +  G++L++MY+KAG + +AR VF+ +P+RDVVS TA++ GYA  G 
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             E+   F+K+  +G+ +N +TY  VL A S   AL  GK++H+ V++  I + + + N+
Sbjct: 429 VVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANA 488

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ MY KCGS+  + RV + MS R V++WN ++ G +++G G E ++ F +M+ E +++P
Sbjct: 489 LMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSE-EMRP 547

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
           ++ T++ V+S C    + + G   F  +   KD G  P  +HY C+VD+L RAG +GEA 
Sbjct: 548 NATTFVNVMSACRVRNLVEEGRRQFASMR--KDYGIVPTEKHYACMVDILARAGHLGEAE 605

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I  MPF+P+AA+ G+LL ACR H NV+IGE   ++ +++EP+NAG YV LS +YA+AG
Sbjct: 606 DVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAG 665

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W DV ++R+LMKE+ V K+PGRSWIE+   +H+F A D+SHP  EE+ ++++ L+ + K
Sbjct: 666 MWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIK 725

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD   V++D+D+E KE+ +  HSEKLA+ +GLI TP   PIRV KNLR+C DCH 
Sbjct: 726 SLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHT 785

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SK+ GR++  RD +RFHH   G CSCGDYW
Sbjct: 786 ATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 217/376 (57%), Gaps = 7/376 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G ++   +Y  LL +CV  + L  G++VH H+++   +P VY+   L+  Y  C  +++A
Sbjct: 39  GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD+   ++VVSW  MIS Y+ +    EA NLF  M +   EP++FTF ++L++C+  
Sbjct: 99  RRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSP 158

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
                G+++H  ++++   ++  VG++L+ MYAK G + +AR VF+ +  RD VS T + 
Sbjct: 159 AALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 218

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
             YA+ G  +E+++ +  +  EG+  + +TY +VL+A   LAAL  GKQ+H+ ++  E  
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH 278

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           S V +  +L  MY KCG++  +R VF+ +  R VI+WN M+ G    G   E   +F+ M
Sbjct: 279 SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM 338

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI--VDCKDGFEPEIEHYGCVVDMLG 410
            +E  V PD VTYLA+LS C+  G    GLA   EI     KDG   ++     +++M  
Sbjct: 339 LKEC-VAPDRVTYLAILSACARPG----GLACGKEIHARAVKDGLVSDVRFGNALINMYS 393

Query: 411 RAGRVGEALEFIKNMP 426
           +AG + +A +    MP
Sbjct: 394 KAGSMKDARQVFDRMP 409



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 208/379 (54%), Gaps = 7/379 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GLE     + ++L+AC +   L  G+ VH  +++        +   LI  Y KC  
Sbjct: 136 MQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGS 195

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DAR++FD M  R+ VSWT +  AY++  ++ E+L  +  ML+    P+  T+  VL++
Sbjct: 196 VRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA 255

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C      E GKQIH+ I++S   S + V ++L  MY K G + +AR VFECLP RDV++ 
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAW 315

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I G    G  EEA  +F ++  E +  + VTY ++L+A +    L  GK++H+  ++
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + S V   N+LI+MYSK GS+  +R+VFD M +R V+SW A++ GY+  G   +VVE 
Sbjct: 376 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCG---QVVES 432

Query: 349 FNLMRE--ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           F+  ++  +  V+ + +TY+ VL  CS+      G  +  E+V  K G   ++     ++
Sbjct: 433 FSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV--KAGIFADLAVANALM 490

Query: 407 DMLGRAGRVGEALEFIKNM 425
            M  + G V +A+   + M
Sbjct: 491 SMYFKCGSVEDAIRVSEGM 509



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 3/180 (1%)

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           ++ + L  +G   +   Y  +L +      L  GKQVH H+LRF +   V + N+L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
             CGS+  +RR+FD  S ++V+SWN M+ GY+  G+G+E   LF LM++E  ++PD  T+
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEG-LEPDKFTF 148

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +++LS CS     + G  V   +++   G          ++ M  + G V +A      M
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARRVFDAM 206



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E     Y  +L AC N   L+ G+ +HA ++K      + +   L+  Y KC 
Sbjct: 438 KMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCG 497

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA ++ + M  R+VV+W  +I   +Q     EAL  F  M   +  PN  TF  V++
Sbjct: 498 SVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMS 557

Query: 168 SCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +C      E G++  + + K       E H    + ++D+ A+AG + EA  V   +P +
Sbjct: 558 ACRVRNLVEEGRRQFASMRKDYGIVPTEKHY---ACMVDILARAGHLGEAEDVILTMPFK 614

Query: 224 DVV----SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
                  +  A    +  + + E+A E   KL+ +    N  TY S+
Sbjct: 615 PSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQ----NAGTYVSL 657


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/571 (43%), Positives = 373/571 (65%), Gaps = 3/571 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L +C      + G+ VH   +K CY   +Y+   L+  Y K   +++A++ F+EM + ++
Sbjct: 212 LKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDL 271

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHS 183
           + W+ MIS Y+Q   S EAL LF RM +S    PN FTFA+VL +CA      LG QIHS
Sbjct: 272 IPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHS 331

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            ++K   +S+++V ++L+D+YAK G I  +  +F    E++ V+   II GY QLG  E+
Sbjct: 332 CVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEK 391

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF  +    +    VTY+SVL A + L AL  G+Q+HS  ++       V+ NSLID
Sbjct: 392 ALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLID 451

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  +R  FD M ++  +SWNA++ GYS HG+G E + LF++M++ N  KP+ +
Sbjct: 452 MYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNS-KPNKL 510

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ VLS CS+ G+ D+G A F  ++    G EP IEHY C+V +LGR+G+  EA++ I 
Sbjct: 511 TFVGVLSACSNAGLLDKGRAHFKSMLQ-DYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIG 569

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            +PF+P+  +  +LLGAC +H N+D+G+   QR++E+EP++   +V+LSN+YA+A RW++
Sbjct: 570 EIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDN 629

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V  VR+ MK+K V K+PG SW+E   ++H F   D SHP  + + A ++ L  K ++AGY
Sbjct: 630 VAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGY 689

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VPD S VL DV++++KE++L  HSE+LAL FGLI  P G  IR+IKNLRICVDCH   K 
Sbjct: 690 VPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKL 749

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VSK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 750 VSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 204/367 (55%), Gaps = 4/367 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G E+    + TLL   V+         VHA++ K  ++   ++ T LI  Y+ C  +  A
Sbjct: 99  GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAA 158

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD +  +++VSWT M++ Y++     ++L LF +M      PN FT +  L SC G 
Sbjct: 159 RQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGL 218

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F++GK +H   +K  ++  +YVG +LL++Y K+G I EA+  FE +P+ D++  + +I
Sbjct: 219 EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278

Query: 233 SGYAQLGLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           S YAQ    +EA+ELF R  Q   ++ N  T+ASVL A + L  L  G Q+HS VL+  +
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL 338

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S V + N+L+D+Y+KCG +  S ++F   +E+  ++WN ++VGY + G G + + LF+ 
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M   + ++P  VTY +VL   +     + G  +    +  K  +  +      ++DM  +
Sbjct: 399 MLGLD-IQPTEVTYSSVLRASASLVALEPGRQIHSLTI--KTMYNKDSVVANSLIDMYAK 455

Query: 412 AGRVGEA 418
            GR+ +A
Sbjct: 456 CGRIDDA 462



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 187/369 (50%), Gaps = 8/369 (2%)

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM 115
           M    Y  +L   +  R    G+ +H H++K      ++ +  L+  Y     L DA K+
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFG 174
           FDEM   N VS+  +   +S ++H F+     +  L  +  E N+F F T+L        
Sbjct: 61  FDEMPLTNTVSFVTLAQGFS-RSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDL 119

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            +    +H+ + K   ++  +VG++L+D Y+  G +  AR VF+ +  +D+VS T +++ 
Sbjct: 120 ADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVAC 179

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           YA+    E+++ LF ++++ G   N  T ++ L + +GL A   GK VH   L+      
Sbjct: 180 YAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRD 239

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + +  +L+++Y+K G +  +++ F+ M +  +I W+ M+  Y++    +E +ELF  MR+
Sbjct: 240 LYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQ 299

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRA 412
            + V P++ T+ +VL  C+   + + G    ++I  C  K G +  +     ++D+  + 
Sbjct: 300 SSVVVPNNFTFASVLQACASLVLLNLG----NQIHSCVLKVGLDSNVFVSNALMDVYAKC 355

Query: 413 GRVGEALEF 421
           G +  +++ 
Sbjct: 356 GEIENSVKL 364



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 122/251 (48%), Gaps = 7/251 (2%)

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GK +H  I+K      ++  + LL+ Y   G + +A  +F+ +P  + VS   +  G+++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
               + A  L  +L  EG   N   + ++L  L  +        VH++V +    +   +
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +LID YS CG++  +R+VFD +  + ++SW  M+  Y+++    + + LF  MR    
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG- 200

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAGRV 415
            +P++ T  A L  C+  G+E     V   +  C  K  ++ ++     ++++  ++G +
Sbjct: 201 YRPNNFTISAALKSCN--GLE--AFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEI 256

Query: 416 GEALEFIKNMP 426
            EA +F + MP
Sbjct: 257 AEAQQFFEEMP 267


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/589 (41%), Positives = 373/589 (63%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM   G         + L AC        G+++H+ +IK      ++    L+  Y+K
Sbjct: 272 LDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSK 331

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           CE + DAR+ +D M ++++++W A+IS YSQ     +A++LF +M   D + N+ T +TV
Sbjct: 332 CEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTV 391

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A     ++ KQIH++ IKS   S  YV +SLLD Y K   I EA  +FE     D+
Sbjct: 392 LKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDL 451

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           V+ T++I+ Y+Q G  EEA++L+ ++Q   +  +    +S+L A + L+A   GKQ+H H
Sbjct: 452 VAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVH 511

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            ++F     +   NSL++MY+KCGS+  + R F  +  R ++SW+AM+ GY++HG G+E 
Sbjct: 512 AIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEA 571

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           + LFN M  +  V P+ +T ++VL  C+H G+ + G   F E ++   G +P  EHY C+
Sbjct: 572 LRLFNQMLRDG-VPPNHITLVSVLCACNHAGLVNEGKQYF-EKMEVMFGIKPTQEHYACM 629

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGR+G++ EA+E + ++PFE    + G+LLGA R+H N+++G+   + L ++EPE +
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKS 689

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N+YASAG WE+V +VR+ MK+  V K+PG SWIE+   ++TF   DRSH   +
Sbjct: 690 GTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSD 749

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ AK+ QL     +AGY   +   +++VD+ +KEK+L  HSEKLA+ FGLI TP G PI
Sbjct: 750 EIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPI 809

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRICVDCH F KFV K+  R++ +RD NRFHH  +G+CSCGDYW
Sbjct: 810 RVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 214/399 (53%), Gaps = 10/399 (2%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG + +AL+   EM  LG++     + ++L AC  +R L  G++VH   + T +    ++
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+V Y KC  L D+R++F  + ERNVVSW A+ S Y Q     EA+ LF  M+RS  
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PNEF+ + +L +CAG    +LG++IH L++K   +   +  ++L+DMY+KAG I  A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ +   DVVS  AII+G      ++ A+ L  +++  G   N  T +S L A + +  
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
              G+Q+HS +++ +  S +     L+DMYSKC  +  +RR +D+M ++ +I+WNA++ G
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI--VDCKD 393
           YS+ G   + V LF+ M  E+ +  +  T   VL   +      + + V  +I  +  K 
Sbjct: 360 YSQCGDHLDAVSLFSKMFSED-IDFNQTTLSTVLKSVA----SLQAIKVCKQIHTISIKS 414

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           G   +      ++D  G+   + EA +  +   +E   A
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 206/389 (52%), Gaps = 7/389 (1%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+      EM   G+         +LNAC   +    G+++H  M+K       +    L
Sbjct: 165 GEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANAL 224

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y+K   +  A  +F ++   +VVSW A+I+       +  AL L   M  S T PN 
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNM 284

Query: 160 FTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           FT ++ L +CA A GF ELG+Q+HS +IK +  S ++    L+DMY+K   + +AR  ++
Sbjct: 285 FTLSSALKACA-AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYD 343

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P++D+++  A+ISGY+Q G   +A+ LF K+  E +  N  T ++VL +++ L A+  
Sbjct: 344 SMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKV 403

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            KQ+H+  ++  I S   + NSL+D Y KC  +  + ++F+  +   ++++ +M+  YS+
Sbjct: 404 CKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQ 463

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV-FHEIVDCKDGFEP 397
           +G G E ++L+ L  ++  +KPD     ++L+ C++    ++G  +  H I   K GF  
Sbjct: 464 YGDGEEALKLY-LQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAI---KFGFMC 519

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           +I     +V+M  + G + +A      +P
Sbjct: 520 DIFASNSLVNMYAKCGSIEDADRAFSEIP 548



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 184/347 (53%), Gaps = 3/347 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HAH+IK  +     LR  L+  Y+KC     ARK+ DE  E +VVSW++++S Y Q   
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             EAL +F  M     + NEFTF +VL +C+      +G+++H + + + FES  +V ++
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L+ MYAK G + ++R +F  + ER+VVS  A+ S Y Q  L  EA+ LF+++   G++ N
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             + + +L A +GL     G+++H  +L+  +       N+L+DMYSK G +  +  VF 
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           +++   V+SWNA++ G   H      + L + M+     +P+  T  + L  C+  G ++
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSG-TRPNMFTLSSALKACAAMGFKE 301

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G  +   ++   D         G +VDM  +   + +A     +MP
Sbjct: 302 LGRQLHSSLIK-MDAHSDLFAAVG-LVDMYSKCEMMDDARRAYDSMP 346



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 4/265 (1%)

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H+ +IK  F     + + L+ +Y+K  R   AR + +   E DVVS ++++SGY Q G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA+ +F ++ + G+  N  T+ SVL A S    L  G++VH   +     S   + N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+ MY+KCG L  SRR+F  + ER V+SWNA+   Y +  +  E V LF  M     + 
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG-IM 180

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+  +   +L+ C+  G+++  L      +  K G + +      +VDM  +AG +  A+
Sbjct: 181 PNEFSISIILNACA--GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 420 EFIKNMPFEPTAAILGSLLGACRVH 444
              +++   P      +++  C +H
Sbjct: 239 AVFQDIA-HPDVVSWNAIIAGCVLH 262


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/625 (41%), Positives = 372/625 (59%), Gaps = 42/625 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      + +LLN+C     L  G+R+H+H+ +      + +   LI  Y KC 
Sbjct: 248 QMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCN 307

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF-----EALNLFIRMLRSDTEPNEFTF 162
            + +AR++FD M +R+V+SW+AMI+ Y+Q  +       E   L  RM R    PN+ TF
Sbjct: 308 SVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTF 367

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF----- 217
            ++L +C      E G+QIH+ + K  FE    + +++ +MYAK G I+EA  VF     
Sbjct: 368 MSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMAN 427

Query: 218 --------------EC------------LPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
                         +C            +P R+VVS   +I+GYAQ G   +  EL   +
Sbjct: 428 KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSM 487

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           + EG   + VT  ++L A   LA L  GK VH+  ++  + S  V+  SLI MYSKCG +
Sbjct: 488 KAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQV 547

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             +R VFD MS R  ++WNAML GY +HG G E V+LF  M +E +V P+ +T  AV+S 
Sbjct: 548 AEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKE-RVSPNEITLTAVISA 606

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           CS  G+   G  +F  +   ++ F+  P  +HYGC+VD+LGRAGR+ EA EFI++MP EP
Sbjct: 607 CSRAGLVQEGREIFRMM---QEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEP 663

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
             ++  +LLGAC+ H NV + E     ++E+EP  A  Y+ LSN+YA AGRW+D T+VR 
Sbjct: 664 DISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRR 723

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +M ++ + KD G S IE+D  +HTF A D +HP  + + A+++ L+ + KEAGY PDM  
Sbjct: 724 VMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRF 783

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+DVD+ QKEK L  HSEKLA+ +GL+ TP G PIR++KNLR+C DCH   KF+SK+  
Sbjct: 784 VLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRK 843

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD NRFH+   GTCSCGD+W
Sbjct: 844 REIVARDANRFHYFNNGTCSCGDFW 868



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 221/405 (54%), Gaps = 11/405 (2%)

Query: 36  LCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           LC  G+L +A+  +  +   GL +    Y  ++  C   R    G+ VH  + +      
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +YL   LI FY+K E ++ A ++F  M  R+VV+W++MI+AY+   H  +A + F RM  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           ++ EPN  TF ++L +C      E G++IH+++     E+ + V ++L+ MY+K G I  
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VF  + ER+VVS TAII   AQ     EA EL+ ++   G+  N VT+ S+L + + 
Sbjct: 211 ACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
             AL  G+++HSH+    + + +++ N+LI MY KC S+  +R +FD MS+R VISW+AM
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 333 LVGYSKHGMG-----REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           + GY++ G        EV +L   MR E  V P+ VT++++L  C+  G  ++G  +  E
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREG-VFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           +   K GFE +      + +M  + G + EA +    M  +   A
Sbjct: 390 L--SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/618 (40%), Positives = 367/618 (59%), Gaps = 46/618 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +  AC   +  R G+ V+ +M+   +     ++  ++  + KC  +  AR+ F+E+ 
Sbjct: 114 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIE 173

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++V  W  M+S Y+ K    +ALN+F +M+    +PN  T A+ +++C        G++
Sbjct: 174 FKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233

Query: 181 IHSLIIK-SNFESHIYVGSSLLDMYAKA-------------------------------- 207
           IH   IK    +S + VG+SL+D YAK                                 
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 208 -----------GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
                       R+H A  VF  L  RDVV   +IIS  AQ G    A++L R++ +  +
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N VT  S L A S LAAL  GK++H  ++R  + +   + NSLIDMY +CGS+  SRR
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD M +R ++SWN M+  Y  HG G + V LF   R    +KP+ +T+  +LS CSH G
Sbjct: 414 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG-LKPNHITFTNLLSACSHSG 472

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + G   F +++  +   +P +E Y C+VD+L RAG+  E LEFI+ MPFEP AA+ GS
Sbjct: 473 LIEEGWKYF-KMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGS 531

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LLGACR+H N D+ E+  + L E+EP+++GNYV+++N+Y++AGRWED  ++R LMKE+ V
Sbjct: 532 LLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGV 591

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
           TK PG SWIE+ + LH+F   D SHP+ E++SAK++ L    KE GYVPD + VL DVDE
Sbjct: 592 TKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDE 651

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           ++KE  L GHSEK+AL FGLI T  G P+R+IKNLR+C DCH+  KF+SKV  R + +RD
Sbjct: 652 DEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRD 711

Query: 617 KNRFHHIVEGTCSCGDYW 634
             RFHH V+G CSCGDYW
Sbjct: 712 NYRFHHFVDGVCSCGDYW 729



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 187/338 (55%), Gaps = 8/338 (2%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E Y ++L  C     LR G +VHA ++        +L +RL+  Y +  C+ DAR+MFD+
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 70

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M ERNV SWTA++  Y       E + LF  M+     P+ F F  V  +C+    + +G
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K ++  ++   FE +  V  S+LDM+ K GR+  AR  FE +  +DV     ++SGY   
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVL 297
           G  ++A+ +FRK+ +EG+  N +T AS ++A + L+ L HG+++H + ++  E+ S +++
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 250

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML--VGYSKHGMGREVVELFNLMREE 355
            NSL+D Y+KC S+  +RR F  + +  ++SWNAML   G++++G G+  +E F  M   
Sbjct: 251 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIA 310

Query: 356 NKV-----KPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
             V       D V + +++S C+  G     L +  E+
Sbjct: 311 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 348



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM    +E+      + L AC     LR G+ +H  +I+       ++   LI  Y +
Sbjct: 345 LREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGR 404

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  +R++FD M +R++VSW  MIS Y       +A+NLF +      +PN  TF  +
Sbjct: 405 CGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNL 464

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           L++C+ +   E G K    +  +   +  +   + ++D+ ++AG+ +E     E +P   
Sbjct: 465 LSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEP 524

Query: 225 VVSCTAIISGYAQL----GLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             +    + G  ++     L E A     +L+ +    NYV  A++ +A
Sbjct: 525 NAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSS-GNYVLMANIYSA 572



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           YAS+L     L  L  G QVH+ ++   +     L + L+++Y + G +  +RR+FD MS
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           ER V SW A++  Y   G   E ++LF LM  E  V+PD   +  V   CS       G 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVGK 131

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
            V+  ++    GFE      G ++DM  + GR+  A  F + + F+
Sbjct: 132 DVYDYMLSI--GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/570 (41%), Positives = 371/570 (65%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC     ++ G+++H+ ++K    P  ++   LI  Y+KC  L DAR +FD M  ++V
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           + W ++IS YS   +  EA++LF  M +   E N+ T +T+L S AG+      +Q+H++
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTI 415

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            IKS ++   YV +SLLD Y K   + +A  VFE  P  D+V+ T++I+ Y+Q GL EEA
Sbjct: 416 SIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEA 475

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           ++++ ++Q   +  +   ++S+  A + L+A   GKQ+H HVL+  + S V   NSL++M
Sbjct: 476 LKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNM 535

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCGS+  +  +F+ +S R ++SW+AM+ G ++HG GR+ ++LF  M + N + P+ +T
Sbjct: 536 YAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLK-NGILPNHIT 594

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            ++VLS C+H G+       F  +++   G  P  EHY C+VD+LGR GR+ EA+  +K 
Sbjct: 595 LVSVLSACNHAGLVTEARRFF-GLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKE 653

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MPF+ +AA+ G+LLGA R+H N+++G    + L+ +EPE +G +++L+N+YAS G W++V
Sbjct: 654 MPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNV 713

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            +VR  MK   V K+PG SWIEL   ++TF   DRSHP  +E+  K+  L  +   AGYV
Sbjct: 714 AKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYV 773

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P +   L+DV++ +KE++L  HSEKLA+ FGLI TP GAPIRV KNLR+C+DCH   KF+
Sbjct: 774 PMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFI 833

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKV  R++ +RD NRFHH  +G+CSCGDYW
Sbjct: 834 SKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 202/373 (54%), Gaps = 7/373 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM + G+        T+LNAC        G +VH ++IK  Y    +    L+  Y K  
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSG 237

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C   A  +F E+ + ++VSW A+I+       +  AL L  +M      P+ FT ++ L 
Sbjct: 238 CPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     +LG+Q+HS ++K + E   +VG  L+DMY+K G + +AR VF+ +P +DV+ 
Sbjct: 298 ACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIV 357

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             +IISGY+  G D EA+ LF  +  EG+  N  T +++L + +G  A G  +QVH+  +
Sbjct: 358 WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISI 417

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +  ++   YV   NSL+D Y KC  L  + +VF+      ++++ +M+  YS++G+G E 
Sbjct: 418 KSGYQYDGYVA--NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEA 475

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++++  M++ + +KPD+  + ++ + C++    ++G  +   ++ C  G   ++     +
Sbjct: 476 LKMYLRMQDRD-IKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC--GLLSDVFAGNSL 532

Query: 406 VDMLGRAGRVGEA 418
           V+M  + G + +A
Sbjct: 533 VNMYAKCGSIDDA 545



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 189/412 (45%), Gaps = 46/412 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL      + +  G  +HA +I+            L   Y+KC+C   ARK+  +  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRLGLLGLRNRLVNL---YSKCQCFRVARKLVIDSS 109

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E ++VSW+A+IS Y Q     EAL  +  M     + NEFTF++VL  C+     ELGKQ
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 181 IHSL----------------------------------------IIKSNFESHIYVGSSL 200
           IH +                                        +IK  ++S  +  ++L
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           LDMYAK+G    A  VF  +P+ D+VS  A+I+G      ++ A++L  K+    +  + 
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T +S L A + +  +  G+Q+HS +++ ++     +   LIDMYSKCG L  +R VFD 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + VI WN+++ GYS  G   E + LF  M +E  ++ +  T   +L   S  G +  
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEG-LEFNQTTLSTILK--STAGSQAN 406

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           G       +  K G++ +      ++D  G+   + +A +  +  P E   A
Sbjct: 407 GFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVA 458


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/574 (41%), Positives = 375/574 (65%), Gaps = 5/574 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL  C +   L  G+ +HA ++ + +R  + ++  L+  Y KC  L  ARK+FDEM  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL--GKQ 180
           +VV+WTA+I+ YSQ     +AL L   MLR   +PN+FT A++L + +G    ++  G+Q
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L ++  ++S++YV  ++LDMYA+   + EA+ +F+ +  ++ VS  A+I+GYA+ G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            ++A  LF  +  E +   + TY+SVL A + + +L  GK VH+ ++++       + N+
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K GS+  +++VFD +++R V+SWN+ML GYS+HG+G+  ++ F  M    ++ P
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR-TRIAP 318

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L VL+ CSH G+ D G   F  +   K   EP+I HY  +VD+LGRAG +  A++
Sbjct: 319 NDITFLCVLTACSHAGLLDEGRHYFDMMK--KYNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP +PTAA+ G+LLGACR+H N+++G +  + + E++    G +V+L N+YA AGR
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGR 436

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W D  +VR++MKE  V K+P  SW+E++  +H F A D +HP R E+    +Q+S K KE
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKE 496

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD S VL  +D++++E  L  HSEKLAL F L+ TP G+ IR+ KN+RIC DCH+ 
Sbjct: 497 IGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSA 556

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KFVSK+  R++ +RD NRFHH  +G CSC DYW
Sbjct: 557 FKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 93/178 (52%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L AC +  +L  G+ VHA MIK   +   ++   L+  Y K   + DA+K+FD + 
Sbjct: 222 YSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA 281

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R+VVSW +M++ YSQ      AL  F  MLR+   PN+ TF  VLT+C+ A   + G+ 
Sbjct: 282 KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRH 341

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
              ++ K N E  I    +++D+  +AG +  A      +P +   +    + G  ++
Sbjct: 342 YFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRM 399


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/578 (42%), Positives = 373/578 (64%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFD 117
           Y ++L+AC     L  G+++H+ +I+      V +   L+  Y KC     + D+RK+F+
Sbjct: 59  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 118

Query: 118 EMRERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M E NV+SWTA+I+AY+Q      EA+ LF +M+     PN F+F++VL +C       
Sbjct: 119 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 178

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+Q++S  +K    S   VG+SL+ MYA++GR+ +AR  F+ L E+++VS  AI+ GYA
Sbjct: 179 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 238

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +    EEA  LF ++   G+  +  T+AS+L+  + + A+G G+Q+H  +L+    S   
Sbjct: 239 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 298

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+LI MYS+CG++  + +VF+ M +R VISW +M+ G++KHG     +E+F+ M E  
Sbjct: 299 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 358

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             KP+ +TY+AVLS CSH GM   G   F+ +   + G  P +EHY C+VD+LGR+G + 
Sbjct: 359 -TKPNEITYVAVLSACSHVGMISEGQKHFNSMYK-EHGIVPRMEHYACMVDLLGRSGLLV 416

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA+EFI +MP    A +  +LLGACRVH N ++G    + ++E EP++   Y++LSNL+A
Sbjct: 417 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 476

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAG+W+DV ++R+ MKE+ + K+ G SWIE++  +H FH  + SHP   ++  ++ QL+ 
Sbjct: 477 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 536

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GY+PD   VL+D++EEQKE+ L  HSEK+A+ FGLI T +  PIR+ KNLR+C D
Sbjct: 537 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 596

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K++S   GR++ +RD NRFHHI  G CSC DYW
Sbjct: 597 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 188/318 (59%), Gaps = 7/318 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A K+FD+M ERN+V+WT MI+ ++Q   + +A++LF+ M  S   P+ FT+++VL++C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFECLPERDVVSC 228
                LGKQ+HS +I+      + VG SL+DMYAK    G + ++R VFE +PE +V+S 
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 229 TAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
           TAII+ YAQ G  D+EAIELF K+    +  N+ +++SVL A   L+    G+QV+S+ +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  I S   + NSLI MY++ G +  +R+ FD + E+ ++S+NA++ GY+K+    E   
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LFN +  +  +   + T+ ++LSG +  G   +G  +   ++  K G++        ++ 
Sbjct: 249 LFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL--KGGYKSNQCICNALIS 305

Query: 408 MLGRAGRVGEALEFIKNM 425
           M  R G +  A +    M
Sbjct: 306 MYSRCGNIEAAFQVFNEM 323



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E+A  G+ +    + +LL+   +   +  G+++H  ++K  Y+    +   LI  Y++C 
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 311

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F+EM +RNV+SWT+MI+ +++   +  AL +F +ML + T+PNE T+  VL+
Sbjct: 312 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 371

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+       G K  +S+  +      +   + ++D+  ++G + EA      +P
Sbjct: 372 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/578 (42%), Positives = 373/578 (64%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFD 117
           Y ++L+AC     L  G+++H+ +I+      V +   L+  Y KC     + D+RK+F+
Sbjct: 54  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 113

Query: 118 EMRERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M E NV+SWTA+I+AY+Q      EA+ LF +M+     PN F+F++VL +C       
Sbjct: 114 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 173

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+Q++S  +K    S   VG+SL+ MYA++GR+ +AR  F+ L E+++VS  AI+ GYA
Sbjct: 174 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 233

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +    EEA  LF ++   G+  +  T+AS+L+  + + A+G G+Q+H  +L+    S   
Sbjct: 234 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 293

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+LI MYS+CG++  + +VF+ M +R VISW +M+ G++KHG     +E+F+ M E  
Sbjct: 294 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 353

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             KP+ +TY+AVLS CSH GM   G   F+ +   + G  P +EHY C+VD+LGR+G + 
Sbjct: 354 -TKPNEITYVAVLSACSHVGMISEGQKHFNSMYK-EHGIVPRMEHYACMVDLLGRSGLLV 411

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA+EFI +MP    A +  +LLGACRVH N ++G    + ++E EP++   Y++LSNL+A
Sbjct: 412 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 471

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAG+W+DV ++R+ MKE+ + K+ G SWIE++  +H FH  + SHP   ++  ++ QL+ 
Sbjct: 472 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 531

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GY+PD   VL+D++EEQKE+ L  HSEK+A+ FGLI T +  PIR+ KNLR+C D
Sbjct: 532 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 591

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K++S   GR++ +RD NRFHHI  G CSC DYW
Sbjct: 592 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 188/318 (59%), Gaps = 7/318 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A K+FD+M ERN+V+WT MI+ ++Q   + +A++LF+ M  S   P+ FT+++VL++C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFECLPERDVVSC 228
                LGKQ+HS +I+      + VG SL+DMYAK    G + ++R VFE +PE +V+S 
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 229 TAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
           TAII+ YAQ G  D+EAIELF K+    +  N+ +++SVL A   L+    G+QV+S+ +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  I S   + NSLI MY++ G +  +R+ FD + E+ ++S+NA++ GY+K+    E   
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LFN +  +  +   + T+ ++LSG +  G   +G  +   ++  K G++        ++ 
Sbjct: 244 LFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL--KGGYKSNQCICNALIS 300

Query: 408 MLGRAGRVGEALEFIKNM 425
           M  R G +  A +    M
Sbjct: 301 MYSRCGNIEAAFQVFNEM 318



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E+A  G+ +    + +LL+   +   +  G+++H  ++K  Y+    +   LI  Y++C 
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 306

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F+EM +RNV+SWT+MI+ +++   +  AL +F +ML + T+PNE T+  VL+
Sbjct: 307 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 366

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+       G K  +S+  +      +   + ++D+  ++G + EA      +P
Sbjct: 367 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/587 (41%), Positives = 367/587 (62%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++     Y  +L AC +   L+ G+ VHA +        V + T L+  Y KC 
Sbjct: 119 EMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCG 178

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +++AR++FD +   +++SWT MI AY+Q  +  EA  L ++M +   +PN  T+ ++L 
Sbjct: 179 SINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN 238

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     +  K++H   + +  E  + VG++L+ MYAK+G I +AR VF+ +  RDVVS
Sbjct: 239 ACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS 298

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I  +A+ G   EA +LF ++Q EG   + + + S+L A +   AL   K++H H L
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHAL 358

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
              +   V +  +L+ MYSK GS+  +R VFD M  R V+SWNAM+ G ++HG+G++ +E
Sbjct: 359 DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALE 418

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F  M     VKPD VT++AVLS CSH G+ D G + +  +     G EP++ H  C+VD
Sbjct: 419 VFRRMTAHG-VKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVY-GIEPDVSHCNCMVD 476

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAGR+ EA  FI NM  +P  A  G+LLG+CR + NV++GE V +  ++++P+NA  
Sbjct: 477 LLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAAT 536

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA AG+W+ V+ VR +M+E+ + K+PGRSWIE+D  +H F  +D SHP  +E+
Sbjct: 537 YVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEI 596

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
           +    ++  K K  GY+PD   VL + + + KE  +  HSEKLA+ +GL+ TP G PIRV
Sbjct: 597 NESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRV 656

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCH   K +SKV GR++ +RD NRFHH  +G CSCGDYW
Sbjct: 657 FKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 198/358 (55%), Gaps = 3/358 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L  C+ Q+ L   ++VH  +IK+      ++   L+  Y +C  L +AR +FD + 
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +++  SW AMI+ Y +  H+ +A+ LF  M     +PN  T+  +L +CA     + GK+
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+ I     ES + VG++LL MY K G I+EAR +F+ L   D++S T +I  YAQ G 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EA  L  +++ EG   N +TY S+L A +   AL   K+VH H L   +   V +  +
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ MY+K GS+  +R VFD M  R V+SWN M+  +++HG G E  +LF  M+ E   KP
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG-CKP 329

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D++ +L++L+ C+  G  +    +    +D   G E ++     +V M  ++G + +A
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALD--SGLEVDVRVGTALVHMYSKSGSIDDA 385



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 180/330 (54%), Gaps = 7/330 (2%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           + +++M   G +     Y ++LNAC ++  L+  +RVH H +       V + T L+  Y
Sbjct: 216 RLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMY 275

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            K   + DAR +FD M+ R+VVSW  MI A+++     EA +LF++M     +P+   F 
Sbjct: 276 AKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFL 335

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA A   E  K+IH   + S  E  + VG++L+ MY+K+G I +AR VF+ +  R
Sbjct: 336 SILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR 395

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QV 282
           +VVS  A+ISG AQ GL ++A+E+FR++   G+  + VT+ +VL+A S    +  G+ Q 
Sbjct: 396 NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQY 455

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGM 341
            +    + I   V   N ++D+  + G L  ++   DNM+ +    +W A+L     +G 
Sbjct: 456 LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGN 515

Query: 342 GREVVELFNLMREEN-KVKPDSVTYLAVLS 370
               VEL  L+ +E  K+ P +     +LS
Sbjct: 516 ----VELGELVAKERLKLDPKNAATYVLLS 541



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 186/358 (51%), Gaps = 10/358 (2%)

Query: 134 YSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           + Q A++  EA+ + +  L+     + F +  VL  C         KQ+H  IIKS  E 
Sbjct: 2   HVQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQ 61

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           + +V ++LL +Y + GR+ EAR VF+ L ++   S  A+I+GY +    E+A+ LFR++ 
Sbjct: 62  NAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC 121

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            EG+  N  TY  +L A + L+AL  GK+VH+ +    + S V +  +L+ MY KCGS+ 
Sbjct: 122 HEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSIN 181

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +RR+FDN+    +ISW  M+  Y++ G G+E   L  L  E+   KP+++TY+++L+ C
Sbjct: 182 EARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLM-LQMEQEGFKPNAITYVSILNAC 240

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           +  G       V    +D   G E ++     +V M  ++G + +A      M      +
Sbjct: 241 ASEGALKWVKRVHRHALDA--GLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS 298

Query: 433 ---ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
              ++G+     R H   D+  F+  +    +P+ A  ++ + N  ASAG  E V ++
Sbjct: 299 WNVMIGAFAEHGRGHEAYDL--FLQMQTEGCKPD-AIMFLSILNACASAGALEWVKKI 353


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 370/574 (64%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +++ AC   + L G + +H+H+ ++      +L   LI  Y KC  +SDAR +FD + 
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VVSWT +I+ Y+Q     EAL L   MLR+   P+ FTF + L +     G  +G+Q
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+L +K N +  +YVGS+LLDMYA+  ++  A  VF+ L  ++ VS  A+I+G+A+ G 
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E  +  F ++Q  G  + + TY+SV +AL+ + AL  G+ VH+H+++        + N+
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++ MY+K GS+  +R+VFD + +R +++WN ML  ++++G+G+E V  F  +R+   ++ 
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYG-IQL 363

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L+VL+ CSHGG+   G   F  + D     EPEI+HY   VD+LGRAG + EAL 
Sbjct: 364 NQITFLSVLTACSHGGLVKEGKQYFDMMKDYN--VEPEIDHYVSFVDLLGRAGLLKEALI 421

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           F+  MP EPTAA+ G+LLGACR+H N  IG++    + E++PE+ G  V+L N+YAS G+
Sbjct: 422 FVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQ 481

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+D  RVR++MK   V K+P  SW+E++  +H F A D +HP  EE+    ++++ + K+
Sbjct: 482 WDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKK 541

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVP+   VL  + E+++E  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 542 AGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSA 601

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            ++VS+V+ R++ +RD NRFHH   G+CSCGDYW
Sbjct: 602 FRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 126/240 (52%), Gaps = 1/240 (0%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           +L  +  P    + +++T+CA +      + IHS + +S      ++ +SL+ MY K G 
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +AR VF+ +P RDVVS T +I+GYAQ  +  EA+ L   +       +  T+ S L A
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
                  G G+Q+H+  +++ +   V + ++L+DMY++C  +  + RVFD +  +  +SW
Sbjct: 173 AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSW 232

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           NA++ G+++ G G   +  F  M + N       TY +V S  +  G  ++G  V   ++
Sbjct: 233 NALIAGFARKGDGETTLMKFAEM-QRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMI 291



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G       Y ++ +A      L  G+ VHAHMIK+  +   ++   ++  Y K  
Sbjct: 254 EMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSG 313

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+FD + +R++V+W  M++A++Q     EA+  F  + +   + N+ TF +VLT
Sbjct: 314 SMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLT 373

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GKQ   ++   N E  I    S +D+  +AG + EA
Sbjct: 374 ACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEA 419


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/572 (41%), Positives = 364/572 (63%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++ AC     +   + +  ++ +  ++  V L T +I  Y KC C+  AR++FD M E+
Sbjct: 136 TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK 195

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+SW+AMI+AY       +AL+LF  ML S   P++ T A++L +C+     ++G+ IH
Sbjct: 196 NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH 255

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            ++ K   +   +V ++L+DMY K   I +AR +F+ +PERD+V+ T +I GYA+ G   
Sbjct: 256 HIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNAN 315

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E++ LF K++ EG++ + V   +V+ A + L A+   + +  ++ R +    V+L  ++I
Sbjct: 316 ESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMI 375

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DM++KCG +  +R +FD M E+ VISW+AM+  Y  HG GR+ ++LF +M     + P+ 
Sbjct: 376 DMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG-ILPNK 434

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T +++L  CSH G+ + GL  F  + +       +++HY CVVD+LGRAGR+ EAL+ I
Sbjct: 435 ITLVSLLYACSHAGLVEEGLRFFSLMWE-DYSVRADVKHYTCVVDLLGRAGRLDEALKLI 493

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++M  E    + G+ LGACR H +V + E     L+E++P+N G+Y++LSN+YA+AGRWE
Sbjct: 494 ESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWE 553

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV + R+LM ++ + K PG +WIE+D   H F   D +HP  +E+   +K L  K +  G
Sbjct: 554 DVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVG 613

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD + VL+DVDEE K  +L  HSEKLA+ FGLI TPE  PIR+IKNLR+C DCH F K
Sbjct: 614 YVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCK 673

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            VS + GR + +RD NRFHH  EG CSCGDYW
Sbjct: 674 LVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 196/362 (54%), Gaps = 3/362 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC + + L+ G+ +H  + K       ++   L+  Y KC  + DAR +FD+M+ER+
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD 95

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+WT MI  Y++   + E+L LF +M      P++    TV+ +CA        + I  
Sbjct: 96  LVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDD 155

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I +  F+  + +G++++DMYAK G +  AR +F+ + E++V+S +A+I+ Y   G   +
Sbjct: 156 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 215

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A++LFR +   GM+ + +T AS+L A S L  L  G+ +H  V +F +     +  +L+D
Sbjct: 216 ALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVD 275

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY KC  +  +R +FD M ER +++W  M+ GY++ G   E + LF+ MREE  V PD V
Sbjct: 276 MYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG-VVPDKV 334

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
             + V+  C+  G   +   +   I   +  F+ ++     ++DM  + G V  A E   
Sbjct: 335 AMVTVVFACAKLGAMHKARTIDDYIQ--RKKFQLDVILGTAMIDMHAKCGCVESAREIFD 392

Query: 424 NM 425
            M
Sbjct: 393 RM 394



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           M+  +++          F  ++R    P+ +T   V+ +C      ++G+ IH ++ K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +   +V ++L+DMY K   I +AR +F+ + ERD+V+ T +I GYA+ G   E++ LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           K++ EG++ + V   +V+ A + L A+   + +  ++ R +    V+L  ++IDMY+KCG
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +R +FD M E+ VISW+AM+  Y  HG GR+ ++LF +M     + PD +T  ++L
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKITLASLL 239

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC--VVDMLGRAGRVGEALEFIKNMP 426
             CS       G  + H +      F  +++H+ C  +VDM G+   + +A      MP
Sbjct: 240 YACSDLKNLQMGRLIHHIVYK----FGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/609 (40%), Positives = 384/609 (63%), Gaps = 37/609 (6%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            + TLL  C NQR    G+++HAH+I+      + + T L+  Y++C  L+ A+++F+ M 
Sbjct: 482  FTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA 541

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ERN  SW +MI  Y Q   + EAL LF +M  +  +P+ F+ +++L+SC      + G++
Sbjct: 542  ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAK-------------------------------AGR 209
            +H+ I+++  E    +   L+DMYAK                               +GR
Sbjct: 602  LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGR 661

Query: 210  IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             ++A+ +F+ + +R+     +I++GYA  GL +E+   F ++    +  + +T  +++  
Sbjct: 662  ANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL 721

Query: 270  LSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
             S L AL HG Q+HS +++   +   VVL+ +L+DMYSKCG++T +R VFDNM+ + ++S
Sbjct: 722  CSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVS 781

Query: 329  WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
            WNAM+ GYSKHG  +E + L+  M ++  + P+ VT+LA+LS CSH G+ + GL +F  +
Sbjct: 782  WNAMISGYSKHGCSKEALILYEEMPKKG-MYPNEVTFLAILSACSHTGLVEEGLRIFTSM 840

Query: 389  VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             +  +  E + EHY C+VD+LGRAGR+ +A EF++ MP EP  +  G+LLGACRVH ++D
Sbjct: 841  QEDYN-IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMD 899

Query: 449  IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
            +G    QRL E++P+N G YVI+SN+YA+AGRW++V  +R++MK K V KDPG SWIE++
Sbjct: 900  MGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEIN 959

Query: 509  QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY---DVDEEQKEKVLLG 565
              +  FHA  ++HP  EE+   ++ L+++ K  GY+PD S +L    D+ EE++E+ LL 
Sbjct: 960  SEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQ 1019

Query: 566  HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
            HSE+LAL+ GLI  P+ + IRV KNLRIC DCH   KF+SK+ GR++  RD NRFHH   
Sbjct: 1020 HSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFEN 1079

Query: 626  GTCSCGDYW 634
            G CSCGDYW
Sbjct: 1080 GKCSCGDYW 1088



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 237/472 (50%), Gaps = 39/472 (8%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++ AC+    + G +++ + ++K      +++   L+  Y +   + DA    DE+ 
Sbjct: 178 FPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIE 237

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             +VV+W A+I+ Y +     EA  +F RML+    P+ FTFA+ L  C      + GKQ
Sbjct: 238 GTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 297

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS +I   F+   +VG++L+DMYAK         VF+ + ER+ V+  +IIS  AQ G 
Sbjct: 298 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 357

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A+ LF ++Q  G  SN     S+L A +GLA +G G+++H H++R  + S ++L ++
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSA 417

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMYSKCG +  + +VF ++ ER  +S+NA+L GY + G   E +EL++ M+ E+ ++P
Sbjct: 418 LVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQP 477

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG----FEPEIEH--------------- 401
           D  T+  +L+ C++   +++G  +   ++          E E+ H               
Sbjct: 478 DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 537

Query: 402 ----------YGCVVDMLGRAGRVGEALEFIKNMPF---EPTAAILGSLLGACRVHYNVD 448
                     +  +++   + G   EAL   K M     +P    L S+L +C    +  
Sbjct: 538 NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597

Query: 449 IG----EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            G     F+ +  ME   E     V+L ++YA  G  +   +V +   +K V
Sbjct: 598 KGRELHNFIVRNTME---EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDV 646



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 190/329 (57%), Gaps = 6/329 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A      +  G+ +H H+++      + L + L+  Y+KC  + +A ++F  + ER
Sbjct: 382 SILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER 441

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQI 181
           N VS+ A+++ Y Q+  + EAL L+  M   D  +P++FTF T+LT CA       G+QI
Sbjct: 442 NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 501

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ +I++N   +I V + L+ MY++ GR++ A+ +F  + ER+  S  ++I GY Q G  
Sbjct: 502 HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGET 561

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +EA+ LF+++Q+ G+  +  + +S+L++   L+    G+++H+ ++R  +    +LQ  L
Sbjct: 562 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVL 621

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY+KCGS+ Y+ +V+D   ++ VI  N M+  +   G   +   LF+ M + N     
Sbjct: 622 VDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRN----- 676

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +  + ++L+G ++ G++      F E+++
Sbjct: 677 TALWNSILAGYANKGLKKESFNHFLEMLE 705



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 195/370 (52%), Gaps = 10/370 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---ARKMFD 117
           Y +L+  C++  + + G+ +H  MI   Y P  YL T++++ Y +  CL D   ARK+F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           EM ERN+ +W  MI AY++     E L L+ RM  S    ++FTF +V+ +C        
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            +Q+ S ++K+    +++VG +L+D YA+ G + +A    + +    VV+  A+I+GY +
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           +   EEA  +F ++   G+  +  T+AS L     L +   GKQVHS ++         +
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+LIDMY+KC       +VFD M ER  ++WN+++   ++ G   + + LF L  +E+ 
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF-LRMQESG 372

Query: 358 VKPDSVTYLAVLSGCSHGGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            K +     ++L   +  G+ D  +G  +   +V  ++    +I     +VDM  + G V
Sbjct: 373 YKSNRFNLGSIL--MASAGLADIGKGRELHGHLV--RNLLNSDIILGSALVDMYSKCGMV 428

Query: 416 GEALEFIKNM 425
            EA +  +++
Sbjct: 429 EEAHQVFRSL 438



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 173/354 (48%), Gaps = 41/354 (11%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    +M   G++       ++L++CV+    + G+ +H  +++        L
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 617

Query: 96  RTRLIVFYNKCECL-------------------------------SDARKMFDEMRERNV 124
           +  L+  Y KC  +                               +DA+ +FD+M +RN 
Sbjct: 618 QVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNT 677

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
             W ++++ Y+ K    E+ N F+ ML SD E +  T  T++  C+     E G Q+HSL
Sbjct: 678 ALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSL 737

Query: 185 IIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           IIK  F    + + ++L+DMY+K G I +AR VF+ +  +++VS  A+ISGY++ G  +E
Sbjct: 738 IIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 797

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A+ L+ ++  +GM  N VT+ ++L+A S    +  G ++ + +   + I +       ++
Sbjct: 798 ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 857

Query: 303 DMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH---GMGREVVE-LFNL 351
           D+  + G L  ++   + M  E  V +W A+L     H    MGR   + LF L
Sbjct: 858 DLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 166/343 (48%), Gaps = 17/343 (4%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE-- 212
           ++ N   +++++  C  +  F+ GK IH+ +I + +    Y+ + +L +YA++G + +  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 213 -ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR +FE +PER++ +   +I  YA++    E + L+ +++  G  S+  T+ SV+ A  
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            +  +G  +Q+ S V++  +   + +  +L+D Y++ G +  +    D +   +V++WNA
Sbjct: 187 AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ GY K     E   +F+ M +   V PD+ T+ + L  C      D G  V  +++ C
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             GF+ +      ++DM  +       L+    M  E       S++ A         G 
Sbjct: 306 --GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISA-----EAQFGH 357

Query: 452 FVGQRLMEIEPENAG----NYVILSNLYASAGRWEDVTRVREL 490
           F    ++ +  + +G     + + S L ASAG   D+ + REL
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAG-LADIGKGREL 399


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/578 (42%), Positives = 372/578 (64%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFD 117
           Y ++L+AC     L  G+++H+ +I+      V +   L+  Y KC     + D+RK+F+
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 118 EMRERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M E NV+SWTA+I+AY Q      EA+ LF +M+     PN F+F++VL +C       
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 353

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+Q++S  +K    S   VG+SL+ MYA++GR+ +AR  F+ L E+++VS  AI+ GYA
Sbjct: 354 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 413

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +    EEA  LF ++   G+  +  T+AS+L+  + + A+G G+Q+H  +L+    S   
Sbjct: 414 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 473

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+LI MYS+CG++  + +VF+ M +R VISW +M+ G++KHG     +E+F+ M E  
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 533

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             KP+ +TY+AVLS CSH GM   G   F+ +   + G  P +EHY C+VD+LGR+G + 
Sbjct: 534 -TKPNEITYVAVLSACSHVGMISEGQKHFNSMYK-EHGIVPRMEHYACMVDLLGRSGLLV 591

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA+EFI +MP    A +  +LLGACRVH N ++G    + ++E EP++   Y++LSNL+A
Sbjct: 592 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 651

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAG+W+DV ++R+ MKE+ + K+ G SWIE++  +H FH  + SHP   ++  ++ QL+ 
Sbjct: 652 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 711

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GY+PD   VL+D++EEQKE+ L  HSEK+A+ FGLI T +  PIR+ KNLR+C D
Sbjct: 712 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 771

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K++S   GR++ +RD NRFHHI  G CSC DYW
Sbjct: 772 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 209/369 (56%), Gaps = 18/369 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           Y  LL +C+  R  + G+ VH  ++++       +   LI  Y+KC     AR +F+ M 
Sbjct: 29  YSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMG 88

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            +R++VSW+AM+S ++  +  ++A+  F+ ML     PNE+ FA V+ +C+ A    +G+
Sbjct: 89  NKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE 148

Query: 180 QIHSLIIKSNF-ESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            I+  ++K+ + E+ + VG  L+DM+ K +G +  A  VF+ +PER++V+ T +I+ +AQ
Sbjct: 149 IIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ 208

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           LG   +AI+LF  +++ G + +  TY+SVL+A + L  L  GKQ+HS V+R  +   V +
Sbjct: 209 LGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCV 268

Query: 298 QNSLIDMYSKC---GSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMR 353
             SL+DMY+KC   GS+  SR+VF+ M E  V+SW A++  Y + G   +E +ELF  M 
Sbjct: 269 GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 328

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV----VDML 409
               ++P+  ++ +VL  C +      G  V+   V      +  I    CV    + M 
Sbjct: 329 -SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV------KLGIASVNCVGNSLISMY 381

Query: 410 GRAGRVGEA 418
            R+GR+ +A
Sbjct: 382 ARSGRMEDA 390



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 215/391 (54%), Gaps = 9/391 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRL 99
           Q     ++M  LG       +  ++ AC N      G+ ++  ++KT Y    V +   L
Sbjct: 111 QAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCEL 170

Query: 100 I-VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           I +F      L  A K+FD+M ERN+V+WT MI+ ++Q   + +A++LF+ M  S   P+
Sbjct: 171 IDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPD 230

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARG 215
            FT+++VL++C       LGKQ+HS +I+      + VG SL+DMYAK    G + ++R 
Sbjct: 231 RFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRK 290

Query: 216 VFECLPERDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
           VFE +PE +V+S TAII+ Y Q G  D+EAIELF K+    +  N+ +++SVL A   L+
Sbjct: 291 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 350

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
               G+QV+S+ ++  I S   + NSLI MY++ G +  +R+ FD + E+ ++S+NA++ 
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY+K+    E   LFN +  +  +   + T+ ++LSG +  G   +G  +   ++  K G
Sbjct: 411 GYAKNLKSEEAFLLFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL--KGG 467

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           ++        ++ M  R G +  A +    M
Sbjct: 468 YKSNQCICNALISMYSRCGNIEAAFQVFNEM 498



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 185/398 (46%), Gaps = 48/398 (12%)

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
           H+F  L+L   M + +  P+  T++ +L SC     F+LGK +H  +++S  E    V +
Sbjct: 9   HAFSTLDL---MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 199 SLLDMYAKAGRIHEARGVFECL-PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +L+ +Y+K G    AR +FE +  +RD+VS +A++S +A   ++ +AI  F  +   G  
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSK-CGSLTYSR 315
            N   +A+V+ A S       G+ ++  V++   + + V +   LIDM+ K  G L  + 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VFD M ER +++W  M+  +++ G  R+ ++LF L  E +   PD  TY +VLS C+  
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSACTEL 244

Query: 376 GMEDRGLAVFHEIV----------------------------DCKDGFEPEIEH----YG 403
           G+   G  +   ++                            D +  FE   EH    + 
Sbjct: 245 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 304

Query: 404 CVVDMLGRAGRVG-EALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFV---GQR 456
            ++    ++G    EA+E    M      P      S+L AC    +   GE V     +
Sbjct: 305 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 364

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           L        GN +I  ++YA +GR ED  +  +++ EK
Sbjct: 365 LGIASVNCVGNSLI--SMYARSGRMEDARKAFDILFEK 400



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E+A  G+ +    + +LL+   +   +  G+++H  ++K  Y+    +   LI  Y++C 
Sbjct: 427 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 486

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F+EM +RNV+SWT+MI+ +++   +  AL +F +ML + T+PNE T+  VL+
Sbjct: 487 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 546

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+       G K  +S+  +      +   + ++D+  ++G + EA      +P
Sbjct: 547 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 601


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/578 (42%), Positives = 372/578 (64%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFD 117
           Y ++L+AC     L  G+++H+ +I+      V +   L+  Y KC     + D+RK+F+
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 118 EMRERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M E NV+SWTA+I+AY Q      EA+ LF +M+     PN F+F++VL +C       
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 371

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+Q++S  +K    S   VG+SL+ MYA++GR+ +AR  F+ L E+++VS  AI+ GYA
Sbjct: 372 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 431

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +    EEA  LF ++   G+  +  T+AS+L+  + + A+G G+Q+H  +L+    S   
Sbjct: 432 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 491

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+LI MYS+CG++  + +VF+ M +R VISW +M+ G++KHG     +E+F+ M E  
Sbjct: 492 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 551

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             KP+ +TY+AVLS CSH GM   G   F+ +   + G  P +EHY C+VD+LGR+G + 
Sbjct: 552 -TKPNEITYVAVLSACSHVGMISEGQKHFNSMYK-EHGIVPRMEHYACMVDLLGRSGLLV 609

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA+EFI +MP    A +  +LLGACRVH N ++G    + ++E EP++   Y++LSNL+A
Sbjct: 610 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 669

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAG+W+DV ++R+ MKE+ + K+ G SWIE++  +H FH  + SHP   ++  ++ QL+ 
Sbjct: 670 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 729

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GY+PD   VL+D++EEQKE+ L  HSEK+A+ FGLI T +  PIR+ KNLR+C D
Sbjct: 730 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 789

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K++S   GR++ +RD NRFHHI  G CSC DYW
Sbjct: 790 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 224/415 (53%), Gaps = 27/415 (6%)

Query: 21  LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMR------FEEYDTLLNACVNQRTL 74
           L  P+F P    L      G+L  A    +TL L  +         Y  LL +C+  R  
Sbjct: 4   LKNPNFEPLKNRLIRQLDVGRLHHAF---STLDLMTQQNAPPDLTTYSILLKSCIRFRNF 60

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISA 133
           + G+ VH  ++++       +   LI  Y+KC     AR +F+ M  +R++VSW+AM+S 
Sbjct: 61  QLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSC 120

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ES 192
           ++  +  ++A+  F+ ML     PNE+ FA V+ +C+ A    +G+ I+  ++K+ + E+
Sbjct: 121 FANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEA 180

Query: 193 HIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            + VG  L+DM+ K +G +  A  VF+ +PER++V+ T +I+ +AQLG   +AI+LF  +
Sbjct: 181 DVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM 240

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC--- 308
           ++ G + +  TY+SVL+A + L  L  GKQ+HS V+R  +   V +  SL+DMY+KC   
Sbjct: 241 ELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD 300

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYLA 367
           GS+  SR+VF+ M E  V+SW A++  Y + G   +E +ELF  M     ++P+  ++ +
Sbjct: 301 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSS 359

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV----VDMLGRAGRVGEA 418
           VL  C +      G  V+   V      +  I    CV    + M  R+GR+ +A
Sbjct: 360 VLKACGNLSDPYTGEQVYSYAV------KLGIASVNCVGNSLISMYARSGRMEDA 408



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 215/391 (54%), Gaps = 9/391 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRL 99
           Q     ++M  LG       +  ++ AC N      G+ ++  ++KT Y    V +   L
Sbjct: 129 QAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCEL 188

Query: 100 I-VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           I +F      L  A K+FD+M ERN+V+WT MI+ ++Q   + +A++LF+ M  S   P+
Sbjct: 189 IDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPD 248

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARG 215
            FT+++VL++C       LGKQ+HS +I+      + VG SL+DMYAK    G + ++R 
Sbjct: 249 RFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRK 308

Query: 216 VFECLPERDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
           VFE +PE +V+S TAII+ Y Q G  D+EAIELF K+    +  N+ +++SVL A   L+
Sbjct: 309 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 368

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
               G+QV+S+ ++  I S   + NSLI MY++ G +  +R+ FD + E+ ++S+NA++ 
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY+K+    E   LFN +  +  +   + T+ ++LSG +  G   +G  +   ++  K G
Sbjct: 429 GYAKNLKSEEAFLLFNEI-ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL--KGG 485

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           ++        ++ M  R G +  A +    M
Sbjct: 486 YKSNQCICNALISMYSRCGNIEAAFQVFNEM 516



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 185/398 (46%), Gaps = 48/398 (12%)

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
           H+F  L+L   M + +  P+  T++ +L SC     F+LGK +H  +++S  E    V +
Sbjct: 27  HAFSTLDL---MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 199 SLLDMYAKAGRIHEARGVFECL-PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +L+ +Y+K G    AR +FE +  +RD+VS +A++S +A   ++ +AI  F  +   G  
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSK-CGSLTYSR 315
            N   +A+V+ A S       G+ ++  V++   + + V +   LIDM+ K  G L  + 
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VFD M ER +++W  M+  +++ G  R+ ++LF L  E +   PD  TY +VLS C+  
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSACTEL 262

Query: 376 GMEDRGLAVFHEIV----------------------------DCKDGFEPEIEH----YG 403
           G+   G  +   ++                            D +  FE   EH    + 
Sbjct: 263 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 404 CVVDMLGRAGRVG-EALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFV---GQR 456
            ++    ++G    EA+E    M      P      S+L AC    +   GE V     +
Sbjct: 323 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 382

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           L        GN +I  ++YA +GR ED  +  +++ EK
Sbjct: 383 LGIASVNCVGNSLI--SMYARSGRMEDARKAFDILFEK 418



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E+A  G+ +    + +LL+   +   +  G+++H  ++K  Y+    +   LI  Y++C 
Sbjct: 445 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 504

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F+EM +RNV+SWT+MI+ +++   +  AL +F +ML + T+PNE T+  VL+
Sbjct: 505 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 564

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+       G K  +S+  +      +   + ++D+  ++G + EA      +P
Sbjct: 565 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 619


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/557 (42%), Positives = 370/557 (66%), Gaps = 2/557 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++H+ ++K      +++   L+  Y+KC+ L DAR  F+ + E+++++W A+IS YSQ 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EAL+LF+ M +     N+ T +T+L S AG     + +Q+H L +KS F S IYV 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +SL+D Y K   + +A  +FE     D+VS T++I+ YAQ G  EEA++LF ++Q   + 
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +    +S+L A + L+A   GKQ+H H+L++     +   NSL++MY+KCGS+  + R 
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  ++ER ++SW+AM+ G ++HG GR+ ++LFN M +E  V P+ +T ++VL  C+H G+
Sbjct: 592 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG-VSPNHITLVSVLGACNHAGL 650

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
                 ++ E ++   GF+P  EHY C++D+LGRAG++ EA+E +  MPFE  A++ G+L
Sbjct: 651 VTEA-KLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGAL 709

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGA R+H +V++G    + L  +EPE +G +V+L+N+YASAG+WE+V  VR LM++  V 
Sbjct: 710 LGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVK 769

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+PG SWIE+   ++TF   DRSH   +E+ AK+ +LS    +AGYVP +   L+DV++ 
Sbjct: 770 KEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQS 829

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE +L  HSEKLA+ FGLI TP+GAPIRV KNLR+CVDCH   K++ K+  R++ +RD 
Sbjct: 830 EKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDI 889

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH  +G+CSCGDYW
Sbjct: 890 NRFHHFKDGSCSCGDYW 906



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 179/336 (53%), Gaps = 14/336 (4%)

Query: 22  TVPSFPPNPQN--LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79
           TVP F  +PQ   +  L   G  T   +             Y  LL+ C   ++LR G +
Sbjct: 30  TVPQFSEDPQTTAILNLIDKGNFTPTSVS------------YSKLLSQCCTTKSLRPGLQ 77

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HAH+ K+       +R  LI  Y+KC     ARK+ DE  E ++VSW+A+IS Y+Q   
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
              AL  F  M     + NEFTF++VL +C+      +GKQ+H +++ S FE  ++V ++
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L+ MYAK     +++ +F+ +PER+VVS  A+ S Y Q     EA+ LF ++ + G+  N
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPN 257

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             + +S++ A +GL     GK +H ++++          N+L+DMY+K G L  +  VF+
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + +  ++SWNA++ G   H    + +EL   M+ +
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 196/379 (51%), Gaps = 30/379 (7%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+      EM   G++       +++NAC   R    G+ +H ++IK  Y    +    L
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANAL 299

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y K   L+DA  +F+++++ ++VSW A+I+      H  +AL L  +M R       
Sbjct: 300 VDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR------- 352

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
                               Q+HS ++K + ES ++V   L+DMY+K   + +AR  F  
Sbjct: 353 --------------------QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNL 392

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           LPE+D+++  AIISGY+Q   D EA+ LF ++  EG+  N  T +++L + +GL  +   
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 452

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           +QVH   ++    S + + NSLID Y KC  +  + R+F+  +   ++S+ +M+  Y+++
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G G E ++LF L  ++ ++KPD     ++L+ C++    ++G  +   I+  K GF  +I
Sbjct: 513 GQGEEALKLF-LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL--KYGFVLDI 569

Query: 400 EHYGCVVDMLGRAGRVGEA 418
                +V+M  + G + +A
Sbjct: 570 FAGNSLVNMYAKCGSIDDA 588



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 17/321 (5%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   G+        T+L +    + +   ++VH   +K+ +   +Y+   LI  Y K
Sbjct: 421 FVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK 480

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + DA ++F+E    ++VS+T+MI+AY+Q     EAL LF+ M   + +P+ F  +++
Sbjct: 481 CSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSL 540

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +CA    FE GKQ+H  I+K  F   I+ G+SL++MYAK G I +A   F  L ER +
Sbjct: 541 LNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 600

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS +A+I G AQ G   +A++LF ++  EG+  N++T  SV      L A  H   V   
Sbjct: 601 VSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSV------LGACNHAGLVTEA 654

Query: 286 VLRF----EIPSYVVLQN---SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYS 337
            L F    E+  +  +Q     +ID+  + G +  +  + + M  E     W A+L    
Sbjct: 655 KLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAAR 714

Query: 338 KHG---MGREVVELFNLMREE 355
            H    +GR   E+  ++  E
Sbjct: 715 IHKDVELGRRAAEMLFILEPE 735



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  +EM  + L+       +LLNAC N      G+++H H++K  +   ++    L+  Y
Sbjct: 520 KLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMY 579

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + DA + F E+ ER +VSW+AMI   +Q  H  +AL LF +ML+    PN  T  
Sbjct: 580 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLV 639

Query: 164 TVLTSCAGAFGFELGK----QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           +VL +C  A      K     +  L      + H    + ++D+  +AG+I+EA  +   
Sbjct: 640 SVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY---ACMIDLLGRAGKINEAVELVNK 696

Query: 220 LPERDVVSCTAIISGYAQLGLDEE 243
           +P     S    + G A++  D E
Sbjct: 697 MPFEANASVWGALLGAARIHKDVE 720



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 40/303 (13%)

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I    Q   D +   +   +         V+Y+ +L+      +L  G Q+H+H+ +  
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +     ++N LI++YSKC    Y+R++ D  SE  ++SW+A++ GY+++G+G   +  F+
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 351 LMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRG----------LAVFH--- 386
            M     VK +  T+ +VL  CS           HG +   G          L V +   
Sbjct: 147 EMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 387 -EIVDCKDGFE--PE--IEHYGCVVDMLGRAGRVGEALEFIKNMPF---EPTAAILGSLL 438
            E +D K  F+  PE  +  +  +     +    GEA+     M     +P    L S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 439 GACRVHYNVDIGEFVGQRLMEI----EPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            AC    +   G+ +   L+++    +P +A   V   ++YA  G   D   V E +K+ 
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV---DMYAKVGDLADAISVFEKIKQP 322

Query: 495 AVT 497
            + 
Sbjct: 323 DIV 325


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/586 (40%), Positives = 369/586 (62%), Gaps = 1/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M + G+ +    Y ++LNAC   + L  G+ +H+H+ +  +   V +   LI  Y +C  
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++F  M +R+++SW A+I+ Y+++    EA+ L+ +M     +P   TF  +L++
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +  +  GK IH  I++S  +S+ ++ ++L++MY + G + EA+ VFE    RDV+S 
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            ++I+G+AQ G  E A +LF+++Q E +  + +T+ASVL+      AL  GKQ+H  +  
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V L N+LI+MY +CGSL  +R VF ++  R V+SW AM+ G +  G   + +EL
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M+ E    PD  T+ ++LS C+H G+   G  +F  + + + G  P IEHYGC+V +
Sbjct: 621 FWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSM-ESEYGVLPTIEHYGCLVGL 679

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRA R  EA   I  MPF P AA+  +LLGACR+H N+ + E      +++   N   Y
Sbjct: 680 LGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVY 739

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           ++LSN+YA+AGRW+DV ++R +M+ + + K+PGRSWIE+D I+H F A+DRSHP   E+ 
Sbjct: 740 ILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIY 799

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           A++K+LSV+ +EAGY PD   VL+D+ +  +E  L  HSE+LA+ +GLI TP G PIR+ 
Sbjct: 800 AELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIF 859

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRIC DCH  +KF+SK+ GR++  RD NRFH    G CSC DYW
Sbjct: 860 KNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 217/394 (55%), Gaps = 4/394 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M++ G+      Y  LL+A      L  G+R+H   ++      + + T L+    +C 
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG 278

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A++ F  + +R+VV + A+I+A +Q  H+ EA   + RM       N  T+ ++L 
Sbjct: 279 DVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+ +   E GK IHS I +    S + +G++L+ MYA+ G + +AR +F  +P+RD++S
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             AII+GYA+     EA+ L++++Q EG+    VT+  +L+A +  +A   GK +H  +L
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R  I S   L N+L++MY +CGSL  ++ VF+    R VISWN+M+ G+++HG      +
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M+ E +++PD++T+ +VLSGC +    + G  +   I +   G + ++     +++
Sbjct: 519 LFQEMQNE-ELEPDNITFASVLSGCKNPEALELGKQIHGRITE--SGLQLDVNLGNALIN 575

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
           M  R G + +A     ++      +   +++G C
Sbjct: 576 MYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 197/366 (53%), Gaps = 3/366 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C  +R L   +R+HA M++    P ++L   LI  Y KC  + DA ++F EM 
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V+SW ++IS Y+Q+    +A  LF  M  +   PN+ T+ ++LT+C      E GK+
Sbjct: 90  RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK 149

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IHS IIK+ ++    V +SLL MY K G +  AR VF  +  RDVVS   ++  YAQ   
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E + LF ++  EG+  + VTY ++L A +  + L  GK++H   +   + S + +  +
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ M  +CG +  +++ F  +++R V+ +NA++   ++HG   E  E +  MR +  V  
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG-VAL 328

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  TYL++L+ CS     + G  +   I +  DG   +++    ++ M  R G + +A E
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISE--DGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 421 FIKNMP 426
               MP
Sbjct: 387 LFYTMP 392



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 237/486 (48%), Gaps = 42/486 (8%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G       Y ++L AC +   L  G+++H+ +IK  Y+    ++  L+  Y KC 
Sbjct: 118 EMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG 177

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++F  +  R+VVS+  M+  Y+QKA+  E L LF +M      P++ T+  +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + GK+IH L ++    S I VG++L+ M  + G +  A+  F+ + +RDVV 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVV 297

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+I+  AQ G + EA E + +++ +G+  N  TY S+L A S   AL  GK +HSH+ 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                S V + N+LI MY++CG L  +R +F  M +R +ISWNA++ GY++     E + 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           L+  M+ E  VKP  VT+L +LS C++      G  +  +I+  + G +        +++
Sbjct: 418 LYKQMQSEG-VKPGRVTFLHLLSACANSSAYADGKMIHEDIL--RSGIKSNGHLANALMN 474

Query: 408 MLGRAGRVGEA----------------------------------LEFIKNMPFEPTAAI 433
           M  R G + EA                                   + ++N   EP    
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVREL 490
             S+L  C+    +++G+ +  R+ E   +   N GN +I  N+Y   G  +D   V   
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI--NMYIRCGSLQDARNVFHS 592

Query: 491 MKEKAV 496
           ++ + V
Sbjct: 593 LQHRDV 598



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 5/298 (1%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           TE +  T+  +L +C         K+IH+ ++++     I++ + L++MY K   + +A 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +P RDV+S  ++IS YAQ G  ++A +LF ++Q  G I N +TY S+LTA    A
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            L +GK++HS +++        +QNSL+ MY KCG L  +R+VF  +S R V+S+N ML 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            Y++    +E + LF  M  E  + PD VTY+ +L   +   M D G  +    V+  +G
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEG-ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE--EG 259

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH-YNVDIGE 451
              +I     +V M  R G V  A +  K +  +    +  +L+ A   H +NV+  E
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHGHNVEAFE 316



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 137/246 (55%), Gaps = 1/246 (0%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  +   +M + G++     +  LL+AC N      G+ +H  ++++  +   +L   L
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y +C  L +A+ +F+  + R+V+SW +MI+ ++Q      A  LF  M   + EP+ 
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            TFA+VL+ C      ELGKQIH  I +S  +  + +G++L++MY + G + +AR VF  
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGH 278
           L  RDV+S TA+I G A  G D +AIELF ++Q EG    +  T+ S+L+A +    +  
Sbjct: 593 LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLE 652

Query: 279 GKQVHS 284
           G Q+ S
Sbjct: 653 GYQIFS 658


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/575 (42%), Positives = 370/575 (64%), Gaps = 6/575 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFDEMR 120
           +++AC     L  G++ H  ++K+     V +   L+  Y KC     + DARK+FD M 
Sbjct: 151 VVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210

Query: 121 ERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             NV+SWTA+I+ Y Q      EA+ LF+ M++   +PN FTF++VL +CA      LG+
Sbjct: 211 VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+++L++K    S   VG+SL+ MY++ G +  AR  F+ L E+++VS   I++ YA+  
Sbjct: 271 QVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSL 330

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA ELF +++  G   N  T+AS+L+  S + A+G G+Q+HS +L+    S + + N
Sbjct: 331 NSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICN 390

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MYS+CG++  + +VF+ M +  VISW +M+ G++KHG     +E F+ M E   V 
Sbjct: 391 ALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG-VS 449

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VTY+AVLS CSH G+   GL  F  +   + G  P +EHY CVVD+LGR+G + EA+
Sbjct: 450 PNEVTYIAVLSACSHVGLISEGLKHFKSM-KVEHGIVPRMEHYACVVDLLGRSGHLEEAM 508

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E + +MPF+  A +L + LGACRVH N+D+G+   + ++E +P +   Y++LSNL+ASAG
Sbjct: 509 ELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAG 568

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE+V  +R+ MKE+ +TK+ G SWIE++  +H F+  D SHP  +E+  ++ QL++K K
Sbjct: 569 QWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIK 628

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E GY+P    VL+DV+EEQKE+ L  HSEK+A+ +G I T    PIRV KNLR+C DCH 
Sbjct: 629 ELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHT 688

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K+ S V  +++ LRD NRFHH  +GTCSC DYW
Sbjct: 689 AFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 217/388 (55%), Gaps = 11/388 (2%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFY 103
           A  +M   G       +  +  AC N+  +  G+ +   ++KT Y    V +   LI  +
Sbjct: 29  AFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMF 88

Query: 104 NKCEC-LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
            K    L  A K+FD M +RNVV+WT MI+ + Q   S +A++LF+ M+ S   P+ FT 
Sbjct: 89  VKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTL 148

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFEC 219
           + V+++CA      LG+Q H L++KS  +  + VG SL+DMYAK    G + +AR VF+ 
Sbjct: 149 SGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDR 208

Query: 220 LPERDVVSCTAIISGYAQL-GLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALG 277
           +P  +V+S TAII+GY Q  G D EAIELF ++ V+G +  N+ T++SVL A + L+ + 
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEM-VQGQVKPNHFTFSSVLKACANLSDIW 267

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+QV++ V++  + S   + NSLI MYS+CG++  +R+ FD + E+ ++S+N ++  Y+
Sbjct: 268 LGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           K     E  ELFN + E      ++ T+ ++LSG S  G   +G  +   I+  K GF+ 
Sbjct: 328 KSLNSEEAFELFNEI-EGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL--KSGFKS 384

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +     ++ M  R G +  A +    M
Sbjct: 385 NLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 156/260 (60%), Gaps = 7/260 (2%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R++VSW+A+IS Y+    +FEA++ F  ML     PNE+ F  V  +C+      LGK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 181 IHSLIIKSN-FESHIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           I   ++K+  FES + VG +L+DM+ K  G +  A  VF+ +P+R+VV+ T +I+ + QL
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   +A++LF  + + G + +  T + V++A + +  L  G+Q H  V++  +   V + 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 299 NSLIDMYSKC---GSLTYSRRVFDNMSERTVISWNAMLVGYSKH-GMGREVVELFNLMRE 354
            SL+DMY+KC   GS+  +R+VFD M    V+SW A++ GY +  G  RE +ELF L   
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELF-LEMV 242

Query: 355 ENKVKPDSVTYLAVLSGCSH 374
           + +VKP+  T+ +VL  C++
Sbjct: 243 QGQVKPNHFTFSSVLKACAN 262



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL+   +   +  G+++H+ ++K+ ++  +++   LI  Y++C  +  A ++F+EM 
Sbjct: 354 FASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG 413

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-K 179
           + NV+SWT+MI+ +++   +  AL  F +ML +   PNE T+  VL++C+       G K
Sbjct: 414 DGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLK 473

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              S+ ++      +   + ++D+  ++G + EA  +   +P
Sbjct: 474 HFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMP 515


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/578 (42%), Positives = 381/578 (65%), Gaps = 7/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y+ LL  C     L+ G+ VH H++ + +R  + ++  ++  Y KC  L  AR++FDEM 
Sbjct: 94  YNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMC 153

Query: 121 ERNVVSWTAMISAYSQKAHSFEA---LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            ++VV+WT+MI+ YSQ  ++  A   L LF+ M+R    PNEF  ++ L  C G  G  +
Sbjct: 154 VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS-LVKCCGFLGSCV 212

Query: 178 -GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            GKQIH    K  F+ +++VGSSL+DMYA+ G + E+R VF+ L  ++ VS  A+ISG+A
Sbjct: 213 DGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFA 272

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           + G  EEA+ LF K+Q EG  +   TY+++L + S   +L  GK +H+H+++        
Sbjct: 273 RKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGY 332

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+L+ MY+K G++  +++VFD + +  V+S N+ML+GY++HG+G+E VELF  M    
Sbjct: 333 VGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWV 392

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           +++P+ +T+L+VL+ CSH G+ D GL  F E++  K G EP++ HY  VVD+ GRAG + 
Sbjct: 393 EIEPNDITFLSVLTACSHAGLLDEGLYYF-ELMK-KYGLEPKLSHYTTVVDLFGRAGLLD 450

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           +A  FI+ MP EP A I G+LLGA ++H N ++G +  Q+++E++P   G + +LSN+YA
Sbjct: 451 QAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYA 510

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAG+W+DV +VR+ MK+  + K+P  SW+E++  +H F A+D SHP + ++    + L+ 
Sbjct: 511 SAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQ 570

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GYVPD S V   VD+++KE  L  HSEKLAL F L+ T  G+ IR++KN+R+C D
Sbjct: 571 KIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGD 630

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+  K+VS V  R++ +RD NRFHH  +G+CSC DYW
Sbjct: 631 CHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/585 (41%), Positives = 381/585 (65%), Gaps = 10/585 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+++    + T++  C N + +   +++H  +IK      + ++T L+V Y+KC  + DA
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 113 RKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            K+F  M   +NVVSWTA+IS Y Q   +  A+NLF +M R    PN FT++T+LT+ A 
Sbjct: 349 FKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAA 408

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                   QIH+L++K+N+E+   VG++L D Y+K G  +EA  +FE + E+D+V+ +A+
Sbjct: 409 VSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAM 464

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG-LAALGHGKQVHSHVLRFE 290
           +SGYAQ+G  E A+++F +L  EG+  N  T++SVL A +   A++  GKQ HS  ++  
Sbjct: 465 LSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSG 524

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
             + + + ++L+ MY+K G++  +  VF    +R ++SWN+M+ GY++HG G++ +++F 
Sbjct: 525 FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE 584

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDML 409
            MR +N ++ D +T++ V+S C+H G+ + G   F  +V  KD    P +EHY C+VD+ 
Sbjct: 585 EMRSKN-LELDGITFIGVISACTHAGLVNEGQRYFDLMV--KDYHIVPTMEHYSCMVDLY 641

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            RAG + +A++ I  MPF   A I  +LL ACRVH NV +GE   ++L+ ++P+++  YV
Sbjct: 642 SRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYV 701

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+YA+AG W++  +VR+LM  K V K+ G SWIE+     +F A D SHP  + +  
Sbjct: 702 LLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYL 761

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           K+++LS++ K+AGY PD   VL+DV+EE KE +L  HSE+LA+ FGLI TP G PI+++K
Sbjct: 762 KLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVK 821

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH   K +SK+ GR + +RD NRFHH   G+CSCGDYW
Sbjct: 822 NLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 175/296 (59%), Gaps = 2/296 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G++VH   IK  +   V + T L+  Y K E + D  ++FDEMR +NVVSWT++++ Y Q
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              + +AL LF +M     +PN FTFA VL   A     E G Q+H+++IKS  +S I+V
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G+S+++MY+K+  + +A+ VF+ +  R+ VS  ++I+G+   GLD EA ELF ++++EG+
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
                 +A+V+   + +  +   KQ+H  V++      + ++ +L+  YSKC  +  + +
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 317 VFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           +F  M   + V+SW A++ GY ++G     + LF  MR E  V+P+  TY  +L+ 
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREG-VRPNHFTYSTILTA 405



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 196/387 (50%), Gaps = 9/387 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N Q  K   +M   G++     +  +L        +  G +VH  +IK+     +++   
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y+K   +SDA+ +FD M  RN VSW +MI+ +       EA  LF RM     +  
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           +  FATV+  CA        KQ+H  +IK+  +  + + ++L+  Y+K   I +A  +F 
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF- 352

Query: 219 CLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           C+    ++VVS TAIISGY Q G  + A+ LF +++ EG+  N+ TY+++LTA + ++  
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP- 411

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
               Q+H+ V++    +   +  +L D YSK G    + ++F+ + E+ +++W+AML GY
Sbjct: 412 ---SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGY 468

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G     V++F  + +E  V+P+  T+ +VL+ C+           FH     K GF 
Sbjct: 469 AQMGDIEGAVKIFLQLAKEG-VEPNEFTFSSVLNACAAPTASVEQGKQFHS-CSIKSGFS 526

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIK 423
             +     +V M  + G +  A E  K
Sbjct: 527 NALCVSSALVTMYAKRGNIESANEVFK 553



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 159/263 (60%), Gaps = 1/263 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           ++++FDE  ++ +     ++  +S+   + EALNLF+ + RS +  +  + + VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
            F   +GKQ+H   IK  F   + VG+SL+DMY K   + +   VF+ +  ++VVS T++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++GY Q GL+E+A++LF ++Q+EG+  N  T+A+VL  L+   A+  G QVH+ V++  +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S + + NS+++MYSK   ++ ++ VFD+M  R  +SWN+M+ G+  +G+  E  ELF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 352 MREENKVKPDSVTYLAVLSGCSH 374
           MR E  VK     +  V+  C++
Sbjct: 285 MRLEG-VKLTQTIFATVIKLCAN 306


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/612 (40%), Positives = 395/612 (64%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N + +++LC  G LT+AL E+ +L        Y+ L+ +C +Q +L   QRVH H+++  
Sbjct: 42  NNKLIQSLCKQGNLTQAL-ELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG 100

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           +    +L T+LI  Y+  + + +ARK+FD+ R R +  + A+  A S   H  E LN++ 
Sbjct: 101 FDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYR 160

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGF----ELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           RM       + FT+  VL +C  +  F      G++IH+ I++  ++ ++++ ++L+DMY
Sbjct: 161 RMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMY 220

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE--GMISNYVT 262
           AK G +  A  VF  +P ++VVS +A+I+ YA+ G   EA+ELFR+L +E   +  N VT
Sbjct: 221 AKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVT 280

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SVL A + LAAL  G+ +H ++LR  + S + + ++L+ MY++CG L   +RVFD M 
Sbjct: 281 MVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMD 340

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R V+SWN+++  Y  HG G++ + +F  M   N V+P  +++++VL  CSH G+ D G 
Sbjct: 341 KRDVVSWNSLISSYGVHGFGKKAIGIFEEM-TYNGVEPSPISFVSVLGACSHAGLVDEGK 399

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F+ +     G  P +EHY C+VD+LGRA R+ EA + I+NM  EP   + GSLLG+CR
Sbjct: 400 MLFNSM-HVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCR 458

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E    RL ++EP NAGNYV+L+++YA AG W+ V RV++L++ + + K PGR
Sbjct: 459 IHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGR 518

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIE+ + +++F + D  +P  E+L A + +LS++ KE GYVP    VLYD+   +KE++
Sbjct: 519 SWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERI 578

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHSEKLA+ FGLI + +G  IR+ K+LR+C DCH+F KF+SK   +++ +RD NRFHH
Sbjct: 579 VLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 638

Query: 623 IVEGTCSCGDYW 634
             +G CSCGDYW
Sbjct: 639 FRDGVCSCGDYW 650


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/602 (41%), Positives = 384/602 (63%), Gaps = 12/602 (1%)

Query: 26  FPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMI 85
           FP N   L+T  ++       +E + +  + RF  Y+TLL  C   + L  G+ VHAH++
Sbjct: 37  FPSNDLLLRTSSND-------LEGSYIPADRRF--YNTLLKKCTVFKLLIQGRIVHAHIL 87

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           ++ +R  + +   L+  Y KC  L +ARK+F++M +R+ V+WT +IS YSQ     +AL 
Sbjct: 88  QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALL 147

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            F +MLR    PNEFT ++V+ + A       G Q+H   +K  F+S+++VGS+LLD+Y 
Sbjct: 148 FFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYT 207

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G + +A+ VF+ L  R+ VS  A+I+G+A+    E+A+ELF+ +  +G   ++ +YAS
Sbjct: 208 RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYAS 267

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           +  A S    L  GK VH+++++          N+L+DMY+K GS+  +R++FD +++R 
Sbjct: 268 LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRD 327

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V+SWN++L  Y++HG G+E V  F  MR    ++P+ +++L+VL+ CSH G+ D G   +
Sbjct: 328 VVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG-IRPNEISFLSVLTACSHSGLLDEGWH-Y 385

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           +E++  KDG  PE  HY  VVD+LGRAG +  AL FI+ MP EPTAAI  +LL ACR+H 
Sbjct: 386 YELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           N ++G +  + + E++P++ G +VIL N+YAS GRW D  RVR+ MKE  V K+P  SW+
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           E++  +H F A+D  HP REE++ K +++  K KE GYVPD S V+  VD++++E  L  
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSEK+AL F L+ TP G+ I + KN+R+C DCH   K  SKV GR++ +RD NRFHH  +
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624

Query: 626 GT 627
            +
Sbjct: 625 AS 626


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/575 (42%), Positives = 365/575 (63%), Gaps = 4/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L  C   + L  G+++HA ++K  +    +++  LI  Y  C  +  AR++FDEM 
Sbjct: 127 FPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMS 186

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERNV +W +M + Y++  +  E + LF  ML  D   +E T  +VLT+C      ELG+ 
Sbjct: 187 ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEW 246

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I+  + +   + +  + +SL+DMYAK G++  AR +F+ +  RDVV+ +A+ISGY+Q   
Sbjct: 247 INRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASR 306

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA++LF ++Q   +  N +T  S+L++ + L AL  GK VH  + +  +   V L  +
Sbjct: 307 CREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTA 366

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+D Y+KCGS+  S  VF  M  + V+SW  ++ G + +G G++ +E F LM E+N V+P
Sbjct: 367 LMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN-VEP 425

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
           + VT++ VLS CSH G+ D G  +F  +   +D G EP IEHYGC+VD+LGRAG + EA 
Sbjct: 426 NDVTFIGVLSACSHAGLVDEGRDLF--VSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAF 483

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +FIKNMP +P A I  +LL +C+VH NV+IGE   ++L+ +EP ++G+Y++LSN+YAS G
Sbjct: 484 QFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVG 543

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWED  +VR  MKEK + K PG S IELD ++H F A D  H   EE+   ++ +  + K
Sbjct: 544 RWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIK 603

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYVP+ +    D +E+ KE  +  HSEKLA+ FGLI +P G  IR+ KNLR+C DCHN
Sbjct: 604 SAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHN 663

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K VSKV+ R++ +RD+ RFHH  EG+CSC DYW
Sbjct: 664 ATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 195/360 (54%), Gaps = 11/360 (3%)

Query: 72  RTLRGGQRVHAHMIKT--CYRPPV---YLRTRLIVFYNKCECLSDARKMFDEMRERNVVS 126
           +T+R    +HAH+IKT    +P V    L +  I+       +  A  +F ++ E +  +
Sbjct: 35  KTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTS---MDYAVSIFRQIDEPDSPA 91

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           +  MI  ++ K    EA+ LF  M  +  +P+EFTF  +L  C+       G+QIH+LI+
Sbjct: 92  YNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIM 151

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           K  F SH +V ++L+ MYA  G +  AR VF+ + ER+V +  ++ +GY + G  EE ++
Sbjct: 152 KCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVK 211

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           LF ++    +  + VT  SVLTA   LA L  G+ ++ +V    +     L  SL+DMY+
Sbjct: 212 LFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYA 271

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           KCG +  +RR+FD M  R V++W+AM+ GYS+    RE ++LF+ M++ N + P+ +T +
Sbjct: 272 KCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN-IDPNEITMV 330

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           ++LS C+  G  + G  V   I   K   +  +     ++D   + G V  ++E    MP
Sbjct: 331 SILSSCAVLGALETGKWVHFFIK--KKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 156/292 (53%), Gaps = 4/292 (1%)

Query: 52  LGLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           L L++RF+E    ++L AC     L  G+ ++ ++ +   +    L T L+  Y KC  +
Sbjct: 217 LELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQV 276

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
             AR++FD+M  R+VV+W+AMIS YSQ +   EAL+LF  M +++ +PNE T  ++L+SC
Sbjct: 277 DTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSC 336

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A     E GK +H  I K   +  + +G++L+D YAK G +  +  VF  +P ++V+S T
Sbjct: 337 AVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWT 396

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR- 288
            +I G A  G  ++A+E F  +  + +  N VT+  VL+A S    +  G+ +   + R 
Sbjct: 397 VLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRD 456

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           F I   +     ++D+  + G +  + +   NM  +   + W  +L     H
Sbjct: 457 FGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/620 (40%), Positives = 375/620 (60%), Gaps = 34/620 (5%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M   G+E     +  LL +C      + G+++H H++K       ++ T LI  Y + 
Sbjct: 121 VRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQN 180

Query: 107 E-------------------------------CLSDARKMFDEMRERNVVSWTAMISAYS 135
                                           CL DAR++F+E+  R+ VSW AMI+ Y+
Sbjct: 181 GELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYA 240

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     EAL  F  M R++  PNE T  TVL++CA +   ELG  + S I      S++ 
Sbjct: 241 QSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLR 300

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           + ++L+DMY+K G + +AR +FE + E+D++S   +I GY+ +   +EA+ LFRK+Q   
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHV-LRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           +  N VT+ S+L A + L AL  GK +H+++  +F   +   L  SLIDMY+KCG++  +
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           ++VF  M  +++ SWNAM+ G + HG     +ELF  MR+E   +PD +T++ VLS CSH
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEG-FEPDDITFVGVLSACSH 479

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ + G   F  +V+  D   P+++HYGC++D+LGRAG   EA   +KNM  +P  AI 
Sbjct: 480 AGLVELGRQCFSSMVEDYD-ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIW 538

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLLGACRVH NV++GEF  + L E+EPEN G YV+LSN+YA+AGRW+DV R+R  + +K
Sbjct: 539 GSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDK 598

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K PG S IE+D ++H F   D+ H   +++   + ++    ++AG+VPD S VLYD+
Sbjct: 599 GMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDM 658

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           DEE KE  L  HSEKLA+ FGLI T     IR++KNLR+C +CH+  K +SK++ R++  
Sbjct: 659 DEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIA 718

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD+NRFHH  +G+CSC DYW
Sbjct: 719 RDRNRFHHFKDGSCSCMDYW 738



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 216/444 (48%), Gaps = 39/444 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMR 120
           TLL+ C + + L+   ++H+ +IKT      +  ++LI F   +    LS A  +F+ + 
Sbjct: 37  TLLSTCKSFQNLK---QIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + N   W  MI   S  +    A++ ++RML    EPN +TF  +L SCA     + GKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS------- 233
           IH  ++K   ES  +V +SL++MYA+ G +  A  VF     RD VS TA+I+       
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 234 ------------------------GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                                   GYAQ G  EEA+  F++++   +  N  T  +VL+A
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +   +L  G  V S +    + S + L N+LIDMYSKCG L  +R +F+ + E+ +ISW
Sbjct: 274 CAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISW 333

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N M+ GYS     +E + LF  M++ N V+P+ VT++++L  C++ G  D G  + H  +
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPACAYLGALDLGKWI-HAYI 391

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVD 448
           D K         +  ++DM  + G +  A +    M  +   +    + G A   H N+ 
Sbjct: 392 DKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA 451

Query: 449 IGEFVGQRLMEIEPENAGNYVILS 472
           +  F   R    EP++     +LS
Sbjct: 452 LELFRQMRDEGFEPDDITFVGVLS 475


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/637 (40%), Positives = 391/637 (61%), Gaps = 23/637 (3%)

Query: 8   SRAFSSLTFTQQQLTVPSFPPNP-----QNLKTLCSNGQL-TKALI---EMATLGLEMRF 58
           S  ++ L F+Q         PNP      ++   C++  L  +AL+   EM   GL    
Sbjct: 37  SLQYARLVFSQ--------IPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDR 88

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
             + +L  +C N      G+++H H  K  +    Y +  L+  Y+ C CL  ARK+FD+
Sbjct: 89  YTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDK 145

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFEL 177
           M ++ VVSW  MI  ++Q     EA+ LF RM++S+  +PNE T   VLT+CA A    +
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            K+IH  I +  F  H+ + + L+D+Y K G +  AR +F+   E+++ S   +I+G+ +
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
               EEA+ LFR++Q +G+  + VT AS+L A + L AL  GK +H+++ +  I   V L
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVAL 325

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +L+DMY+KCGS+  + +VF  M E+ V++W A+++G +  G     ++ F+ M  +  
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKG- 384

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           VKPD++T++ VL+ CSH G  D G++ F+ + D   G +P IEHYG +VD+LGRAGR+ E
Sbjct: 385 VKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTY-GIQPTIEHYGGLVDILGRAGRIAE 443

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A E IK+MP  P   +LG LLGACR+H N++  E   ++L+EI+P ++G YV+LSN+Y S
Sbjct: 444 AEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKS 503

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           + +WE+  R RELM E+ + K PG S IE+  ++H F   D SH    E++  ++ +  K
Sbjct: 504 SKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISK 563

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K AGYVPD S VL+D+ EE+KE  L  HSEKLA+ FGL+ T  G PIRV+KNLRIC DC
Sbjct: 564 LKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDC 623

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K +SK+Y R++ +RD+NRFHH  +GTCSC  +W
Sbjct: 624 HSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 181/365 (49%), Gaps = 13/365 (3%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMRERNVVSWTAMISAYS 135
           +++HA M++T      +  ++++ F +  E   L  AR +F ++      +  ++I   +
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
            K    EAL  +  M+     P+ +TF ++  SC  +     GKQIH    K  F S  Y
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTY 121

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF-RKLQVE 254
             ++L++MY+  G +  AR VF+ + ++ VVS   +I  +AQ     EA+ LF R ++ E
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
            +  N VT  +VLTA +    L   K++H ++       +VVL   L+D+Y KCG +  +
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R +FD   E+ + SWN M+ G+ +     E + LF  M+ +  +K D VT  ++L  C+H
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKG-IKGDKVTMASLLLACTH 300

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP----T 430
            G  + G    H  +  K   + ++     +VDM  + G +  A++    MP +     T
Sbjct: 301 LGALELG-KWLHAYIK-KQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 431 AAILG 435
           A ILG
Sbjct: 359 ALILG 363


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/574 (42%), Positives = 366/574 (63%), Gaps = 2/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     L+ G ++H  ++K  +   V+++T L+  Y KC  L DA K+FD++ 
Sbjct: 115 FPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIP 174

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++NVVSWTA+IS Y       EA+++F R+L  +  P+ FT   VL++C        G+ 
Sbjct: 175 DKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEW 234

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  I++     +++VG+SL+DMYAK G + +AR VF+ +PE+D+VS  A+I GYA  GL
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 294

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EAI+LF ++Q E +  +  T   VL+A + L AL  G+ V   V R E     VL  +
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTA 354

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LID+Y+KCGS++ +  VF  M E+  + WNA++ G + +G  +    LF  + E+  +KP
Sbjct: 355 LIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQV-EKLGIKP 413

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D  T++ +L GC+H G+ D G   F+ +        P IEHYGC+VD+LGRAG + EA +
Sbjct: 414 DGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFS-LTPSIEHYGCMVDLLGRAGLLDEAHQ 472

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            I+NMP E  A + G+LLGACR+H +  + E   ++L+E+EP N+GNYV+LSN+Y++  +
Sbjct: 473 LIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLK 532

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W++  +VR  M EK + K PG SWIE+D I+H F   D+ HP+ E++ AK+ +L+ K K 
Sbjct: 533 WDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKV 592

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVP    VL+D++EE+KE  L  HSEKLA+ FGLI     A IRV+KNLR+C DCH  
Sbjct: 593 AGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMA 652

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +S + GR++++RD NRFH   EG+CSC DYW
Sbjct: 653 IKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 178/314 (56%), Gaps = 3/314 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            R +F ++++ N+  W  MI          +A+  +  M      PN FTF  VL +CA 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
               +LG +IH+L++K  F+  ++V +SL+ +YAK G + +A  VF+ +P+++VVS TAI
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ISGY  +G   EAI++FR+L    +  +  T   VL+A + L  L  G+ +H  ++   +
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGM 244

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              V +  SL+DMY+KCG++  +R VFD M E+ ++SW AM+ GY+ +G+ +E ++LF  
Sbjct: 245 VRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQ 304

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M+ EN VKPD  T + VLS C+  G  + G  V   +VD ++ F         ++D+  +
Sbjct: 305 MQREN-VKPDCYTVVGVLSACARLGALELGEWV-SGLVD-RNEFLYNPVLGTALIDLYAK 361

Query: 412 AGRVGEALEFIKNM 425
            G +  A E  K M
Sbjct: 362 CGSMSRAWEVFKGM 375



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            R +F  + + ++     +I G       ++AIE +  ++ EG + N  T+  VL A + 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  L  G ++H+ V++      V ++ SL+ +Y+KCG L  + +VFD++ ++ V+SW A+
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY   G  RE +++F  + E N + PDS T + VLS C+  G  + G  +   I++  
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMN-LAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEM- 242

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G    +     +VDM  + G + +A      MP
Sbjct: 243 -GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP 275



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 42/239 (17%)

Query: 298 QNSLIDMYSKCG----SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            N L++M  +C        Y+R +F  + +  +  WN M+ G   +    + +E + LMR
Sbjct: 45  DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            E  + P++ T+  VL  C+   + D  L V    +  K GF+ ++     +V +  + G
Sbjct: 105 SEGFL-PNNFTFPFVLKACAR--LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG 161

Query: 414 RVGEALEFIKNMP----------------------------------FEPTAAILGSLLG 439
            + +A +   ++P                                    P +  +  +L 
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS 221

Query: 440 ACRVHYNVDIGEFVGQRLMEIE-PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           AC    +++ GE++ + +ME+    N      L ++YA  G  E    V + M EK + 
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV 280


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 373/608 (61%), Gaps = 24/608 (3%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  L +E+      ++L AC      R G+ +H   +K      V++   L+  Y++C  
Sbjct: 100 MRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGS 159

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSF----------------------EALNL 146
           L  AR +FD+M ER+VVSW+ MI AY    + F                      E   L
Sbjct: 160 LVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERL 219

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F+RM+  +  PN+ T  +++ SC      +LGK++H+ I+++ F   + + ++L+DMY K
Sbjct: 220 FVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGK 279

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G I  AR +F+ +  +DV++ TA+IS YAQ    + A +LF +++  G+  N +T  S+
Sbjct: 280 CGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSL 339

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L+  +   AL  GK  H+++ +  +   V+L+ +LIDMY+KCG ++ ++R+F    +R +
Sbjct: 340 LSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDI 399

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
            +WN M+ GY  HG G + ++LF  M E   VKP+ +T++  L  CSH G+   G  +F 
Sbjct: 400 CTWNVMMAGYGMHGYGEKALKLFTEM-ETLGVKPNDITFIGALHACSHAGLVVEGKGLFE 458

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           +++    G  P++EHYGC+VD+LGRAG + EA + I++MP  P  AI G++L AC++H N
Sbjct: 459 KMIH-DFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKN 517

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            ++GE   + L+ +EP+N G  V++SN+YA+A RW DV  +R+ +K+  + K+PG S IE
Sbjct: 518 SNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIE 577

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           ++ ++H F   D +HP+ E++S  + ++S K KEAGY+PD S VL+++DEE+KE  L  H
Sbjct: 578 VNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYH 637

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLA+ FGLI T  G PIRV+KNLRIC DCH   K +SK+Y R + +RD+NRFHH  EG
Sbjct: 638 SEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREG 697

Query: 627 TCSCGDYW 634
           +CSCG YW
Sbjct: 698 SCSCGGYW 705



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 160/304 (52%), Gaps = 25/304 (8%)

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
           ++H   ALN +  M + D E + F   +VL +C+      +GK+IH   +K+   S ++V
Sbjct: 87  ESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFV 146

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDV----------------------VSCTAIISG 234
            ++L+ MY++ G +  AR +F+ + ERDV                      VS TA+I+G
Sbjct: 147 VNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAG 206

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y +    EE   LF ++  E +  N +T  S++ +   + A+  GK++H+++LR      
Sbjct: 207 YIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMS 266

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + L  +L+DMY KCG +  +R +FD+M  + V++W AM+  Y++        +LF  MR 
Sbjct: 267 LALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR- 325

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           +N V+P+ +T +++LS C+  G  D G   FH  +D K G E ++     ++DM  + G 
Sbjct: 326 DNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYID-KQGVEVDVILKTALIDMYAKCGD 383

Query: 415 VGEA 418
           +  A
Sbjct: 384 ISGA 387


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/588 (42%), Positives = 378/588 (64%), Gaps = 11/588 (1%)

Query: 56  MRFEEYDT--LLNACVNQRT--LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           +R +E+    +LN C+   T  L  G++VH   +K+     V +   L+  Y+K  C   
Sbjct: 280 LRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 339

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV-LTSCA 170
           AR++F++M+  +++SW +MIS+ +Q +   E++NLFI +L    +P+ FT A++ L + A
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAA 399

Query: 171 GAFG----FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            A G     + GKQIH+  IK+ F+S ++V S +LDMY K G +  A  VF  +   D V
Sbjct: 400 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 459

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           + T++ISG    G +++A+ ++ +++   ++ +  T+A+++ A S + AL  G+Q+H++V
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 519

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++ +  S   +  SL+DMY+KCG++  + R+F  M+ R +  WNAMLVG ++HG   E V
Sbjct: 520 IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAV 579

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            LF  M+    ++PD V+++ +LS CSH G+        H + +   G EPEIEHY C+V
Sbjct: 580 NLFKSMKSHG-IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN-DYGIEPEIEHYSCLV 637

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D LGRAG V EA + I+ MPF+ +A+I  +LLGACR+  +V+ G+ V  RL  +EP ++ 
Sbjct: 638 DALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA 697

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YV+LSN+YA+A RW+DVT  R++MK K V KDPG SWI++  +LH F   DRSHP  + 
Sbjct: 698 AYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADI 757

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +  KV+++    +E GYVPD   VL DV++E+KE+ L  HSEKLA+ +GLI TP    IR
Sbjct: 758 IYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIR 817

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VIKNLR+C DCHN  K++SKV+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 818 VIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 202/399 (50%), Gaps = 20/399 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL   ++   L  G+  HA ++ +      +L   L+  Y+KC  LS AR++FD   ER+
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 124 VVSWTAMISAY-----SQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFEL 177
           +V+W A++ AY     S   ++ E L+LF R+LR+        T A VL  C  +     
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            + +H   IK   E  ++V  +L+++Y+K GR+ +AR +F+ + ERDVV    ++ GY Q
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTA--LSGLAALGHGKQVHSHVLRFEIPSYV 295
           LGL++EA +LF +    G+  +  +   +L     +G   L  GKQVH   ++  + S V
Sbjct: 262 LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDV 321

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMRE 354
            + NSL++MYSK G   ++R VF++M    +ISWN+M+   ++  +  E V LF +L+ E
Sbjct: 322 SVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE 381

Query: 355 ENKVKPD-----SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
              +KPD     S+T       C    + D+G  +    +  K GF+ ++     ++DM 
Sbjct: 382 --GLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAI--KAGFDSDLHVNSGILDMY 437

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + G +  A   + N    P      S++  C  + N D
Sbjct: 438 IKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNED 475


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 385/612 (62%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N Q +++LC  G+L +AL  ++      + + Y+ L+  C ++ +L  G RVH H++   
Sbjct: 49  NNQLIQSLCKEGKLKQALRVLSQESSPSQ-QTYELLILCCGHRSSLSDGLRVHRHILDNG 107

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                +L T+LI  Y+    +  ARK+FD+ R+R +  W A+  A +   H  E L L+ 
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 149 RMLRSDTEPNEFTFATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +M R   E + FT+  VL +C      A     GK+IH+ + +  + SH+Y+ ++L+DMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMY 227

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVT 262
           A+ G +  A  VF  +P R+VVS +A+I+ YA+ G   EA+  FR++  E   S  N VT
Sbjct: 228 ARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVT 287

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SVL A + LAAL  G+ +H ++LR  + S + + ++L+ MY +CG L   +RVFD M 
Sbjct: 288 MVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMH 347

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R V+SWN+++  Y  HG GR+ +++F  M   N   P  VT+++VL  CSH G+ + G 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGRKAIQIFEEMLA-NGASPTPVTFVSVLGACSHEGLVEEGK 406

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F  +     G +P++EHY C+VD+LGRA R+ EA + +++M  EP   + GSLLG+CR
Sbjct: 407 RLFESMWR-DHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E   +RL  +EP+NAGNYV+L+++YA A  W++V RV++L++ + + K PGR
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
            W+E+ + +++F + D  +P+ E++ A + +L+   KE GY+P    VLY+++ E+KE++
Sbjct: 526 CWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHSEKLAL FGLI T +G PIR+ KNLR+C DCH F KF+SK   +++ +RD NRFH 
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645

Query: 623 IVEGTCSCGDYW 634
              G CSCGDYW
Sbjct: 646 FKNGVCSCGDYW 657


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/589 (41%), Positives = 363/589 (61%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   GL      Y ++L  C +   L  G+++H  +IK+ ++  VY+ + LI  Y K
Sbjct: 403 FLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAK 462

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L  AR +   +RE +VVSWTAMI+ Y+Q     EAL LF  M       +   F++ 
Sbjct: 463 HGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSA 522

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           +++CAG      G+QIH+    S +   + +G++L+ +YA+ GR  +A   FE +  +D 
Sbjct: 523 ISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN 582

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           +S  A+ISG+AQ G  EEA+++F ++   G+ +N  T+ S ++A +  A +  GKQ+H+ 
Sbjct: 583 ISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAM 642

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++    S     N LI +YSKCGS+  ++R F  M E+ V+SWNAM+ GYS+HG G E 
Sbjct: 643 MIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEA 702

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           V LF  M++   + P+ VT++ VLS CSH G+ + GL+ F  +   + G  P+ EHY CV
Sbjct: 703 VSLFEEMKQLG-LMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSK-EHGLVPKPEHYVCV 760

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+LGRA  +  A EFI+ MP EP A I  +LL AC VH N++IGEF  + L+E+EPE++
Sbjct: 761 VDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDS 820

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YV+LSN+YA +G+W+   R R++MK++ V K+PGRSWIE+   +H F   DR HP+ E
Sbjct: 821 ATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAE 880

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           ++   +  L+ +  E GYV D   +L DV++EQK+     HSEKLA+ FGL+      PI
Sbjct: 881 QIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPI 940

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RVIKNLR+C DCHN+ KFVSK+  R + +RD  RFHH   G CSC DYW
Sbjct: 941 RVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 203/380 (53%), Gaps = 4/380 (1%)

Query: 61  YDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + ++L AC   +   +  +++HA +I   +     +   LI  Y+K   +  A+ +F+ +
Sbjct: 114 FASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL 173

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             ++ VSW AMIS  SQ     EA+ LF +M +S   P  + F++VL++C     F+LG+
Sbjct: 174 FLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGE 233

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H  I+K    S  +V ++L+ +Y++ G +  A  +F  +  RD +S  ++ISG AQ G
Sbjct: 234 QLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRG 293

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             + A++LF K+Q++ M  + VT AS+L+A + + A   GKQ+HS+V++  + S ++++ 
Sbjct: 294 FSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEG 353

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL+D+Y KC  +  +   F       V+ WN MLV Y + G   E   +F  M+ E  + 
Sbjct: 354 SLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEG-LM 412

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+  TY ++L  C+  G  D G  +  +++  K GF+  +     ++DM  + G +  A 
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVI--KSGFQFNVYVCSVLIDMYAKHGELDTAR 470

Query: 420 EFIKNMPFEPTAAILGSLLG 439
             ++ +  E   +    + G
Sbjct: 471 GILQRLREEDVVSWTAMIAG 490



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 188/358 (52%), Gaps = 3/358 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L+AC      + G+++H  ++K       ++   L+  Y++   L  A ++F +M 
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+ +S+ ++IS  +Q+  S  AL LF +M     +P+  T A++L++CA       GKQ
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS +IK    S + +  SLLD+Y K   I  A   F      +VV    ++  Y QLG 
Sbjct: 336 LHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGN 395

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             E+  +F ++Q+EG++ N  TY S+L   + L AL  G+Q+H+ V++      V + + 
Sbjct: 396 LSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSV 455

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+K G L  +R +   + E  V+SW AM+ GY++H +  E ++LF  M E   ++ 
Sbjct: 456 LIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEM-ENQGIRS 514

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D++ + + +S C+     ++G  +  +      G+  ++     +V +  R GR  +A
Sbjct: 515 DNIGFSSAISACAGIQALNQGQQIHAQ--SYISGYSEDLSIGNALVSLYARCGRAQDA 570



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 202/374 (54%), Gaps = 4/374 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+    + Y  L   C N  +L   +++HA + K+ +     L +RLI  Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +A K+FD++   NV  W  +IS    K  + + L LF  M+  +  P+E TFA+VL +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 169 CAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C+G    F++ +QIH+ II   F S   V + L+D+Y+K G +  A+ VFE L  +D VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISG +Q G ++EAI LF ++    +I     ++SVL+A + +     G+Q+H  ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++ + S   + N+L+ +YS+ G+L  + ++F  M  R  IS+N+++ G ++ G     ++
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M + + +KPD VT  ++LS C+  G   +G  +   ++  K G   ++   G ++D
Sbjct: 301 LFEKM-QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI--KMGMSSDLIIEGSLLD 357

Query: 408 MLGRAGRVGEALEF 421
           +  +   +  A E+
Sbjct: 358 LYVKCFDIETAHEY 371



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 157/302 (51%), Gaps = 10/302 (3%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K   EM   G+      + + ++AC   + L  GQ++HA    + Y   + +   L+  Y
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLY 561

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            +C    DA   F+++  ++ +SW A+IS ++Q  H  EAL +F +M ++  E N FTF 
Sbjct: 562 ARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFG 621

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           + +++ A     + GKQIH+++IK+ ++S     + L+ +Y+K G I +A+  F  +PE+
Sbjct: 622 SAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK 681

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG---- 279
           +VVS  A+I+GY+Q G   EA+ LF +++  G++ N+VT+  VL+A S +  +  G    
Sbjct: 682 NVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYF 741

Query: 280 -KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYS 337
                 H L  +   YV     ++D+  +   L  +R   + M  E   + W  +L   +
Sbjct: 742 RSMSKEHGLVPKPEHYVC----VVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACT 797

Query: 338 KH 339
            H
Sbjct: 798 VH 799


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/600 (41%), Positives = 368/600 (61%), Gaps = 11/600 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +A   M  L L+     +   + +C     L  G++ H   +   + P +++ + L+  Y
Sbjct: 138 RAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMY 197

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP------ 157
           +KC  L DAR +FDE+  RN+VSWT+MI+ Y Q   +  AL LF   L  ++        
Sbjct: 198 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEV 257

Query: 158 --NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             +     +VL++C+      + + +H  +IK  FE  + V ++L+D YAK G +  +R 
Sbjct: 258 CVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRR 317

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLA 274
           VF+ + ERDV+S  +II+ YAQ G+  E++E+F ++  +G I+ N VT ++VL A +   
Sbjct: 318 VFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +   GK +H  V++  + S V +  S+IDMY KCG +  +R+ FD M E+ V SW+AM+ 
Sbjct: 378 SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA 437

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG  +E +E+F  M     VKP+ +T+++VL+ CSH G+ + G   F  +    D 
Sbjct: 438 GYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD- 495

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP +EHYGC+VD+LGRAG + EA + IK M   P   + G+LLGACR+H NVD+GE   
Sbjct: 496 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISA 555

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           ++L E++P+N G YV+LSN+YA AGRWEDV R+R LMK   + K PG S +++   +H F
Sbjct: 556 RKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVF 615

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
              DR HP  E++   +++LS+K +E GYVPDM+ VL+DV  E+KE VL  HSEKLA+ F
Sbjct: 616 LVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAF 675

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G++ T  G  I +IKNLR+C DCH   KF+SK+  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 676 GIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 170/301 (56%), Gaps = 10/301 (3%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV SW ++I+  ++   S EAL  F  M +   +PN  TF   + SC+       G+Q H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +   FE  ++V S+L+DMY+K G + +AR +F+ +  R++VS T++I+GY Q     
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 243 EAIELFRKLQVEGMIS--------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            A+ LF++  VE   S        + +   SVL+A S ++     + VH  +++      
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGD 295

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + ++N+L+D Y+KCG L  SRRVFD M+ER VISWN+++  Y+++GM  E +E+F+ M +
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 355

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           + ++  ++VT  AVL  C+H G +  G  +  +++  K G E  +     ++DM  + G+
Sbjct: 356 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVI--KMGLESNVFVGTSIIDMYCKCGK 413

Query: 415 V 415
           V
Sbjct: 414 V 414



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 17/120 (14%)

Query: 305 YSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           YS   +LT    +F+   ++T V SWN+++   ++ G   E +  F+ MR+ + +KP+  
Sbjct: 98  YSNNPNLT---TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS-LKPNRS 153

Query: 364 TYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           T+   +  CS     H G +    A+         GFEP++     +VDM  + G + +A
Sbjct: 154 TFPCAIKSCSALLDLHSGRQAHQQALIF-------GFEPDLFVSSALVDMYSKCGELRDA 206


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/594 (42%), Positives = 367/594 (61%), Gaps = 8/594 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K    M  +G +     + ++L ACV       G+ VH    KT Y   +++   LI  Y
Sbjct: 232 KLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLY 291

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            K   + DA ++F+EM + +V+ W+ MI+ Y+Q   S EA+ +F RM R    PN+FT A
Sbjct: 292 IKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLA 351

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA     +LG QIH  ++K   + +++V ++L+DMYAK GR+  +  +F   P  
Sbjct: 352 SLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNC 411

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKL---QVEGMISNYVTYASVLTALSGLAALGHGK 280
             VS   +I GY Q G  E+A+ LF+ +   QV+G     VTY+SVL A +G+AAL  G 
Sbjct: 412 TDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQG---TEVTYSSVLRACAGIAALEPGS 468

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           Q+HS  ++       V+ N+LIDMY+KCG++  +R VFD + E   +SWNAM+ GYS HG
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
           +  E ++ F  M E  + KPD VT++ +LS CS+ G+ DRG A F  +V+  D  EP  E
Sbjct: 529 LYGEALKTFESMLE-TECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYD-IEPCAE 586

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C+V +LGR+G + +A + +  +PFEP+  +  +LL AC +H +V++G    QR++EI
Sbjct: 587 HYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEI 646

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           EPE+   +V+LSN+YA+A RW +V  +R  MK K + K+PG SWIE    +H F   D S
Sbjct: 647 EPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTS 706

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           HP  + ++  ++ L++K +  GYVPD S VL DV++  KE+ L  HSE+LAL +GLI TP
Sbjct: 707 HPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTP 766

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +P+R+IKNLRIC DCH   K +SK+  R + +RD NRFHH  EG CSCGDYW
Sbjct: 767 SISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 219/422 (51%), Gaps = 6/422 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G E+    + T+L   V+    + G  VHA + K  +    ++ T LI  Y+ C     A
Sbjct: 140 GHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECA 199

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD +  +++VSWT M++ Y +     E+L LF RM     +PN FTFA+VL +C G 
Sbjct: 200 RQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL 259

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F +GK +H    K+++   ++VG  L+D+Y K+G + +A  VFE +P+ DV+  + +I
Sbjct: 260 EVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMI 319

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + YAQ    EEAIE+F +++   ++ N  T AS+L A + L  L  G Q+H HV++  + 
Sbjct: 320 ARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLD 379

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             V + N+L+DMY+KCG +  S ++F      T +SWN ++VGY + G G + + LF  M
Sbjct: 380 MNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM 439

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
             E +V+   VTY +VL  C+     + G  +    +  K  ++        ++DM  + 
Sbjct: 440 L-ECQVQGTEVTYSSVLRACAGIAALEPGSQIHS--LSVKTIYDKNTVVGNALIDMYAKC 496

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVH--YNVDIGEFVGQRLMEIEPENAGNYVI 470
           G + +A   + +M  E       +++    VH  Y   +  F      E +P+      I
Sbjct: 497 GNIKDA-RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGI 555

Query: 471 LS 472
           LS
Sbjct: 556 LS 557



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 186/366 (50%), Gaps = 3/366 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +LL +C+       G+ +H  +IK      ++    L+ FY K + L DA K+FDEM 
Sbjct: 47  YGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMP 106

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RN VS+  +I  YSQ     EA+ LF R+     E N F F+TVL     A   +LG  
Sbjct: 107 DRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFS 166

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+ + K  F+S  +VG++L+D Y+  G    AR VF+ +  +D+VS T +++ Y +   
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENEC 226

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EE+++LF ++++ G   N  T+ASVL A  GL     GK VH    +      + +   
Sbjct: 227 FEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE 286

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LID+Y K G +  + +VF+ M +  VI W+ M+  Y++     E +E+F  MR    V P
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR-RGLVLP 345

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  T  ++L  C+       G  +   +V  K G +  +     ++DM  + GR+  +L+
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVV--KVGLDMNVFVSNALMDMYAKCGRMENSLQ 403

Query: 421 FIKNMP 426
                P
Sbjct: 404 LFSESP 409



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 13/283 (4%)

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           R   S  E N + + ++L SC        GK +H  IIK      ++  + LL+ Y K  
Sbjct: 34  RTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYD 93

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            + +A  +F+ +P+R+ VS   +I GY+Q     EAI LF +LQ EG   N   +++VL 
Sbjct: 94  SLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLK 153

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
            L        G  VH+ V +    S   +  +LID YS CG    +R+VFD +  + ++S
Sbjct: 154 LLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH-- 386
           W  M+  Y ++    E ++LF+ MR     KP++ T+ +VL  C        GL VF+  
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVG-FKPNNFTFASVLKACV-------GLEVFNVG 265

Query: 387 -EIVDC--KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +  C  K  +  E+     ++D+  ++G V +AL+  + MP
Sbjct: 266 KAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP 308


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/563 (40%), Positives = 361/563 (64%), Gaps = 4/563 (0%)

Query: 74  LRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           L+ G+ +HA++++   C +  V L T LI  Y KCE L+ AR++FD + + +++SWTAMI
Sbjct: 241 LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +AY    +  E + LF++ML     PNE T  +++  C  A   ELGK +H+  +++ F 
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT 360

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
             + + ++ +DMY K G +  AR VF+    +D++  +A+IS YAQ    +EA ++F  +
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
              G+  N  T  S+L   +   +L  GK +HS++ +  I   ++L+ S +DMY+ CG +
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + R+F   ++R +  WNAM+ G++ HG G   +ELF  M E   V P+ +T++  L  
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEM-EALGVTPNDITFIGALHA 539

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G+   G  +FH++V  + GF P++EHYGC+VD+LGRAG + EA E IK+MP  P  
Sbjct: 540 CSHSGLLQEGKRLFHKMVH-EFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNI 598

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           A+ GS L AC++H N+ +GE+  ++ + +EP  +G  V++SN+YASA RW DV  +R  M
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAM 658

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           K++ + K+PG S IE++ +LH F   DR HP  +++   + ++  K ++AGY PD+SCVL
Sbjct: 659 KDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVL 718

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           +++D+E+K   L  HSEKLA+ +GLI T  G PIR++KNLR+C DCHN  K +SK+YGR+
Sbjct: 719 HNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGRE 778

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           + +RD+NRFHH  EG+CSC DYW
Sbjct: 779 IIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 185/358 (51%), Gaps = 5/358 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC    +   GQ VH  ++K  +   V++   LI+ Y++   L+ AR +FD++  +
Sbjct: 129 SVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENK 188

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSW+ MI +Y +     EAL+L   M     +P+E    ++    A     +LGK +H
Sbjct: 189 DVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMH 248

Query: 183 SLIIKSN--FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           + ++++    +S + + ++L+DMY K   +  AR VF+ L +  ++S TA+I+ Y     
Sbjct: 249 AYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNN 308

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             E + LF K+  EGM  N +T  S++       AL  GK +H+  LR      +VL  +
Sbjct: 309 LNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATA 368

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            IDMY KCG +  +R VFD+   + ++ W+AM+  Y+++    E  ++F  M     ++P
Sbjct: 369 FIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG-IRP 427

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +  T +++L  C+  G  + G  + H  +D K G + ++      VDM    G +  A
Sbjct: 428 NERTMVSLLMICAKAGSLEMGKWI-HSYID-KQGIKGDMILKTSFVDMYANCGDIDTA 483



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 175/362 (48%), Gaps = 50/362 (13%)

Query: 73  TLRGGQRVHAHMIKTC----YRPPVY----------LRTRLIVFYNKCECLSDARKMFDE 118
            L   Q++H H IKT     YR P+           + + LI  Y K  C +DA K++  
Sbjct: 55  NLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAY 114

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           MR                                +DTE + F   +VL +C     F LG
Sbjct: 115 MRG-------------------------------TDTEVDNFVIPSVLKACCLIPSFLLG 143

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H  ++K+ F   ++V ++L+ MY++ G +  AR +F+ +  +DVVS + +I  Y + 
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI--PSYVV 296
           GL +EA++L R + V  +  + +   S+   L+ LA L  GK +H++V+R      S V 
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L  +LIDMY KC +L Y+RRVFD +S+ ++ISW AM+  Y       E V LF  M  E 
Sbjct: 264 LCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG 323

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
              P+ +T L+++  C   G  + G  + H     ++GF   +      +DM G+ G V 
Sbjct: 324 MF-PNEITMLSLVKECGTAGALELG-KLLHAFT-LRNGFTLSLVLATAFIDMYGKCGDVR 380

Query: 417 EA 418
            A
Sbjct: 381 SA 382



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 1/267 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L+  C     L  G+ +HA  ++  +   + L T  I  Y KC  +  AR +FD  + +
Sbjct: 333 SLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK 392

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++ W+AMIS+Y+Q     EA ++F+ M      PNE T  ++L  CA A   E+GK IH
Sbjct: 393 DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIH 452

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S I K   +  + + +S +DMYA  G I  A  +F    +RD+    A+ISG+A  G  E
Sbjct: 453 SYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGE 512

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSL 301
            A+ELF +++  G+  N +T+   L A S    L  GK++ H  V  F     V     +
Sbjct: 513 AALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCM 572

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVIS 328
           +D+  + G L  +  +  +M  R  I+
Sbjct: 573 VDLLGRAGLLDEAHELIKSMPMRPNIA 599



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            + M   G+        +LL  C    +L  G+ +H+++ K   +  + L+T  +  Y  
Sbjct: 417 FVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYAN 476

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  A ++F E  +R++  W AMIS ++   H   AL LF  M      PN+ TF   
Sbjct: 477 CGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGA 536

Query: 166 LTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           L +C+ +   + GK++ H ++ +  F   +     ++D+  +AG + EA  + + +P R
Sbjct: 537 LHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMR 595


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/587 (41%), Positives = 371/587 (63%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G +     +  +L AC+  +    G+ VH  ++KT Y   +Y+   L+  Y +C 
Sbjct: 137 QMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCG 196

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              DA + F +M + +V+ W+ MIS ++Q   S +AL +F +M R+   PN+FTF++VL 
Sbjct: 197 DNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQ 256

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A     +L K IH   +K+   + ++V ++L+  YAK G I ++  +FE L +R+ VS
Sbjct: 257 ASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVS 316

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              II  Y QLG  E A+ LF  +    + +  VTY+S+L A + LAAL  G QVH    
Sbjct: 317 WNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTA 376

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +      V + N+LIDMY+KCGS+  +R +FD +  R  +SWNA++ GYS HG+G E ++
Sbjct: 377 KTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIK 436

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +FNLM+E  K KPD +T++ VLS CS+ G  D G   F  +     G EP +EHY C+V 
Sbjct: 437 MFNLMKE-TKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQ-DYGIEPCMEHYTCMVW 494

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           ++GR+G + +A++FI+++PFEP+  I  +LLGAC +H +V++G    QR++E+EP +  +
Sbjct: 495 LMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEAS 554

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           +V+LSN+YA A RW +V  VR+ MK K V K+PG SWIE    +H F  +D SH   + +
Sbjct: 555 HVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLI 614

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
           +  ++ L++K ++AGY P ++ VL DV++++KE++L  HSE+LAL FGL+  P G PIR+
Sbjct: 615 NGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRI 674

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IKNLRICVDCH+  K +SK+ GR + +RD NRFHH   G+CSC DYW
Sbjct: 675 IKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 205/359 (57%), Gaps = 5/359 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+L   V+      G+ VH  ++K  Y    ++ T LI  Y+   C+S AR++FDE+ 
Sbjct: 49  FTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEIS 108

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT MI++Y++     EAL  F +M  +  +PN FTFA VL +C G   F+ GK 
Sbjct: 109 SKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKT 168

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  ++K+N+E  +YVG  LL++Y + G   +A   F  +P+ DV+  + +IS +AQ G 
Sbjct: 169 VHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQ 228

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E+A+E+F +++   +I N  T++SVL A + + +L   K +H H L+  + + V + N+
Sbjct: 229 SEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNA 288

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVK 359
           L+  Y+KCG +  S  +F+ +S+R  +SWN ++V Y + G G   + LF N++R +  V+
Sbjct: 289 LMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQ--VQ 346

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
              VTY ++L  C+     + GL V    +  K  +  ++     ++DM  + G + +A
Sbjct: 347 ATEVTYSSILRACATLAALELGLQV--HCLTAKTIYGQDVAVGNALIDMYAKCGSIKDA 403



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 1/257 (0%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM ERN VS+  +I  Y+Q     EA  LF R+     E N F F TVL        
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            ELG+ +H  ++K  + S+ ++G++L+D Y+ +G +  AR VF+ +  +D+VS T +I+ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           YA+     EA+E F +++V G   N  T+A VL A  GL     GK VH  VL+      
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + +   L+++Y++CG    + R F +M +  VI W+ M+  +++ G   + +E+F  MR 
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 355 ENKVKPDSVTYLAVLSG 371
              V P+  T+ +VL  
Sbjct: 242 A-FVIPNQFTFSSVLQA 257


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/552 (42%), Positives = 360/552 (65%), Gaps = 4/552 (0%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMF 116
           +  Y  LL  C     +  G+ VHAH++ + +    + L+  ++  Y KC CL DAR+MF
Sbjct: 87  YNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMF 146

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           DEM  +++V+WTA+I+ +SQ     +AL LF +MLR   +PN FT +++L +     G +
Sbjct: 147 DEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLD 206

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G Q+H+  +K  ++S +YVGS+L+DMYA+ G +  A+  F+ +P +  VS  A+ISG+A
Sbjct: 207 PGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           + G  E A+ L  K+Q +     + TY+SV +A + + AL  GK VH+H+++  +     
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+L+DMY+K GS+  ++RVFD + +  V+SWN ML G ++HG+G+E ++ F  M    
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            ++P+ +++L VL+ CSH G+ D GL  F  +   K   EP++ HY   VD+LGR G + 
Sbjct: 387 -IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYK--VEPDVPHYVTFVDLLGRVGLLD 443

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
            A  FI+ MP EPTAA+ G+LLGACR+H N+++G +  +R  E++P ++G  ++LSN+YA
Sbjct: 444 RAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYA 503

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           SAGRW DV +VR++MKE  V K P  SW+E++  +H F A+D +HP  +E+  K +++S 
Sbjct: 504 SAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISG 563

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K KE GYVPD S VL  VD++++E+ L  HSEKLAL F L+ TP G+PIR+ KN+R+C D
Sbjct: 564 KIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGD 623

Query: 597 CHNFAKFVSKVY 608
           CH   KFVSK+Y
Sbjct: 624 CHAAIKFVSKIY 635



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 161/291 (55%), Gaps = 9/291 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LGL+       +LL A  ++  L  G ++HA  +K  Y+  VY+ + L+  Y +C 
Sbjct: 179 QMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A+  FD M  ++ VSW A+IS +++K     AL+L  +M R + +P  FT+++V +
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFS 298

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     E GK +H+ +IKS  +   ++G++LLDMYAKAG I +A+ VF+ L + DVVS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG----KQVH 283
              +++G AQ GL +E ++ F ++   G+  N +++  VLTA S    L  G    + + 
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            + +  ++P YV    + +D+  + G L  + R    M  E T   W A+L
Sbjct: 419 KYKVEPDVPHYV----TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 183/351 (52%), Gaps = 8/351 (2%)

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRI 210
           R    P+   ++ +L  C      E G+ +H+ ++ S+F ++H+ + + +++MYAK G +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +AR +F+ +P +D+V+ TA+I+G++Q     +A+ LF ++   G+  N+ T +S+L A 
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKAS 199

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
                L  G Q+H+  L++   S V + ++L+DMY++CG +  ++  FD M  ++ +SWN
Sbjct: 200 GSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWN 259

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++ G+++ G G   + L   M+ +N  +P   TY +V S C+  G  ++G  V   ++ 
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVFSACASIGALEQGKWVHAHMI- 317

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH--YNVD 448
            K G +        ++DM  +AG + +A      +  +P      ++L  C  H      
Sbjct: 318 -KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHGLGKET 375

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           +  F     + IEP N  +++ +    + +G  ++     ELMK+  V  D
Sbjct: 376 LDRFEQMLRIGIEP-NEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPD 425


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/589 (42%), Positives = 365/589 (61%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM   G+        + L AC        G+++H+ +IK       +L   LI  Y+K
Sbjct: 200 LREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSK 259

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + DAR +F  M ER++++W A+IS +SQ     EA +LF  M       N+ T +TV
Sbjct: 260 CNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A      + +QIH+L +KS FE   YV +SL+D Y K G + +A  VFE  P  D+
Sbjct: 320 LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           V  T++++ YAQ G  EEA+ L+ ++Q  G+  +    +S+L A + L+A   GKQVH H
Sbjct: 380 VLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVH 439

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +L+F   S +   NSL++MY+KCGS+  +   F  +  R ++SW+AM+ G ++HG G+E 
Sbjct: 440 ILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEA 499

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++LF  M +   V P+ +T ++VL  C+H G+       F+ +     G EP  EHY C+
Sbjct: 500 LQLFKQMLKVG-VPPNHITLVSVLCACNHAGLVAEAKHYFNSM-KILFGIEPMQEHYACM 557

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++  A+E +  MPF+  A + G+LLGA R+H N+D+GE   + L+ +EPE +
Sbjct: 558 IDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKS 617

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N+YAS G W+ V RVR LMK+  V K+PG SW+E+   ++TF   DRSH    
Sbjct: 618 GTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRST 677

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ AK+ +LS   K+AGYVP +   L+DV+  +KE++L  HSEKLA+ FGLI TP GAPI
Sbjct: 678 EIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPI 737

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+SK+  R++ +RD NRFHH  EG+CSCG+YW
Sbjct: 738 RVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 231/474 (48%), Gaps = 42/474 (8%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG++     + ++L AC   + L  G++VH  ++ T +    ++   L++ Y KC  
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
             DAR +FD + +R+VVSW A+ S Y       EA++LF  M+ S   PNEF+ ++++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C G      G++IH  +IK  ++S  +  ++L+DMYAK G + +A  VF+ + + D+VS 
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            AII+G         A+EL R++   GM  N  T +S L A +G+A    G+Q+HS +++
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            ++ S   L   LIDMYSKC S+  +R VF  M ER +I+WNA++ G+S++    E   L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F LM  E  +  +  T   VL   S   ++   +      +  K GFE +      ++D 
Sbjct: 301 FPLMHTEG-IGFNQTTLSTVLK--SIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 409 LGRAGRVGEALEFIKNMP----------------------------------FEPTAAIL 434
            G+ G V +A    +  P                                   +P + + 
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417

Query: 435 GSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVT 485
            SLL AC      + G+ V   +++   +    AGN ++  N+YA  G  ED +
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLV--NMYAKCGSIEDAS 469



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 215/404 (53%), Gaps = 10/404 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+      +M   G+        +++N C        G+++H ++IK  Y    +    
Sbjct: 92  HGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANA 151

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y K   L DA  +FDE+ + ++VSW A+I+      +   AL L   M +S   PN
Sbjct: 152 LVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPN 211

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            FT ++ L +CAG    ELG+Q+HS +IK +  S  ++G  L+DMY+K   + +AR VF+
Sbjct: 212 MFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFK 271

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +PERD+++  A+ISG++Q   DEEA  LF  +  EG+  N  T ++VL +++ L A   
Sbjct: 272 LMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM 331

Query: 279 GKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
            +Q+H+  L+  FE  +YVV  NSLID Y KCG +  + RVF+      ++ + +++  Y
Sbjct: 332 CRQIHALSLKSGFEFDNYVV--NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAY 389

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G G E + L+ L  ++  +KPDS    ++L+ C+     ++G  V   I+  K GF 
Sbjct: 390 AQDGQGEEALRLY-LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL--KFGFM 446

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT---AAILGSL 437
            +I     +V+M  + G + +A      +P       +A++G L
Sbjct: 447 SDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGL 490


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/575 (41%), Positives = 366/575 (63%), Gaps = 4/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L+AC +   L  G+++HAH++++ Y   V + T L   Y KC    DAR++F+ + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V++W  MI  +       EA   F RML     P+  T+ TVL++CA   G   GK+
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+   K    S +  G++L++MY+KAG + +AR VF+ +P+RDVVS T ++  YA    
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             E+   F+++  +G+ +N +TY  VL A S   AL  GK++H+ V++  + + + + N+
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNA 472

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ MY KCGS+  + RVF+ MS R V++WN ++ G  ++G G E ++ + +M+ E  ++P
Sbjct: 473 LMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEG-MRP 531

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
           ++ T++ VLS C    + + G   F  +   KD G  P  +HY C+VD+L RAG + EA 
Sbjct: 532 NAATFVNVLSACRVCNLVEEGRRQFAFM--SKDYGIVPTEKHYACMVDILARAGHLREAE 589

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I  +P +P+AA+ G+LL ACR+H NV+IGE   +  +++EP+NAG YV LS +YA+AG
Sbjct: 590 DVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAG 649

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W DV ++R+ MKE+ V K+PGRSWIE+   +H+F A D+SHP  +E+ A+++ L  + K
Sbjct: 650 MWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMK 709

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD   V++D+D+E KE+ +  HSEKLA+ +GLI TP G PIR+ KNLR+C DCH 
Sbjct: 710 SLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHT 769

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SK+  R++  RD +RFHH   G CSCGDYW
Sbjct: 770 ATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 209/367 (56%), Gaps = 3/367 (0%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +Y  LL +CV  + L  G++VH H+++   +P VY+   L+  Y  C  +++AR++FD+ 
Sbjct: 30  DYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKF 89

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             ++VVSW  MIS Y+ +  + EA NLF  M +   EP++FTF ++L++C+       G+
Sbjct: 90  SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGR 149

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH  ++++   +   VG++L+ MYAK G + +AR VF+ +  RD VS T +   YA+ G
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EE+++ +  +  E +  + +TY +VL+A   LAAL  GKQ+H+H++  E  S V +  
Sbjct: 210 YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVST 269

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L  MY KCG+   +R VF+ +S R VI+WN M+ G+   G   E    F+ M EE  V 
Sbjct: 270 ALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG-VA 328

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD  TY  VLS C+  G   RG  +       KDG   ++     +++M  +AG + +A 
Sbjct: 329 PDRATYTTVLSACARPGGLARGKEIHARAA--KDGLVSDVRFGNALINMYSKAGSMKDAR 386

Query: 420 EFIKNMP 426
           +    MP
Sbjct: 387 QVFDRMP 393



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 220/440 (50%), Gaps = 41/440 (9%)

Query: 42  LTKALIEMATLGLEMRFE----EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           L +    + TL  + R E     + ++L+AC +   L  G+ +H  +++        +  
Sbjct: 109 LAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGN 168

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            LI  Y KC  + DAR++FD M  R+ VSWT +  AY++  +  E+L  +  ML+    P
Sbjct: 169 ALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRP 228

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           +  T+  VL++C      E GKQIH+ I++S + S + V ++L  MY K G   +AR VF
Sbjct: 229 SRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVF 288

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           ECL  RDV++   +I G+   G  EEA   F ++  EG+  +  TY +VL+A +    L 
Sbjct: 289 ECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLA 348

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK++H+   +  + S V   N+LI+MYSK GS+  +R+VFD M +R V+SW  +L  Y+
Sbjct: 349 RGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA 408

Query: 338 KHGMGREVVELFNLMRE--ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV------ 389
                 +VVE F   ++  +  VK + +TY+ VL  CS+      G  +  E+V      
Sbjct: 409 D---CDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLA 465

Query: 390 -------------------DCKDGFEP----EIEHYGCVVDMLGRAGRVGEAL---EFIK 423
                              D    FE     ++  +  ++  LG+ GR  EAL   E +K
Sbjct: 466 DLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMK 525

Query: 424 NMPFEPTAAILGSLLGACRV 443
           +    P AA   ++L ACRV
Sbjct: 526 SEGMRPNAATFVNVLSACRV 545



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 197/403 (48%), Gaps = 46/403 (11%)

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R   + + + +  +L SC  A    +GKQ+H  I++   + ++Y+ ++LL +YA  G ++
Sbjct: 21  RKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVN 80

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           EAR +F+    + VVS   +ISGYA  GL +EA  LF  +Q E +  +  T+ S+L+A S
Sbjct: 81  EARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACS 140

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
             A L  G+++H  V+   + +   + N+LI MY+KCGS+  +RRVFD M+ R  +SW  
Sbjct: 141 SPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 200

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +   Y++ G G E ++ ++ M +E +V+P  +TY+ VLS C      ++G  +   IV+ 
Sbjct: 201 LTGAYAESGYGEESLKTYHAMLQE-RVRPSRITYMNVLSACGSLAALEKGKQIHAHIVES 259

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE----------------------- 428
           +  +  ++     +  M  + G   +A E  + + +                        
Sbjct: 260 E--YHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHG 317

Query: 429 -----------PTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNL 474
                      P  A   ++L AC     +  G+ +  R  +   +     GN +I  N+
Sbjct: 318 TFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALI--NM 375

Query: 475 YASAGRWEDVTRVRELMKEKAV---TKDPGRSWIELDQILHTF 514
           Y+ AG  +D  +V + M ++ V   T   GR + + DQ++ +F
Sbjct: 376 YSKAGSMKDARQVFDRMPKRDVVSWTTLLGR-YADCDQVVESF 417



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G++     Y  +L AC N   L+ G+ +HA ++K      + +   L+  Y KC 
Sbjct: 422 QMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCG 481

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA ++F+ M  R+VV+W  +I    Q     EAL  +  M      PN  TF  VL+
Sbjct: 482 SVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLS 541

Query: 168 SCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C      E G++  + + K       E H    + ++D+ A+AG + EA  V   +P
Sbjct: 542 ACRVCNLVEEGRRQFAFMSKDYGIVPTEKHY---ACMVDILARAGHLREAEDVILTIP 596


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 352/573 (61%), Gaps = 3/573 (0%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++L AC +   L+ G+ +H   +K      +   T L+  Y KC   + A   F+ M  R
Sbjct: 435  SILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            ++V+W ++I+ Y+Q    + A+++F ++  S   P+  T   V+ +CA     + G  IH
Sbjct: 495  DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIH 554

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLD 241
             LI+K  FES  +V ++L+DMYAK G +  A  +F      +D V+   II+ Y Q G  
Sbjct: 555  GLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHA 614

Query: 242  EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            +EAI  F ++++E    N VT+ SVL A + LAA   G   H+ +++    S  ++ NSL
Sbjct: 615  KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 674

Query: 302  IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
            IDMY+KCG L YS ++F+ M  +  +SWNAML GY+ HG G   + LF+LM +E++V+ D
Sbjct: 675  IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM-QESQVQID 733

Query: 362  SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            SV++++VLS C H G+ + G  +FH + D K   +P++EHY C+VD+LGRAG   E L F
Sbjct: 734  SVSFVSVLSACRHAGLVEEGRKIFHSMSD-KYHIKPDLEHYACMVDLLGRAGLFDETLGF 792

Query: 422  IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
            IK MP EP A + G+LLG+CR+H NV +GE     L+++EP N  ++V+LS++YA +GRW
Sbjct: 793  IKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRW 852

Query: 482  EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
             D  + R  M +  + K PG SW+EL   +H F   D+SHP  E +      L  K ++ 
Sbjct: 853  ADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKI 912

Query: 542  GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
            GYVPD SCVL +V+EE KE  L  HSE+LA+TF L+ TP G+ I+++KNLR+C DCH   
Sbjct: 913  GYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTT 972

Query: 602  KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 973  KFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 201/376 (53%), Gaps = 5/376 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ +H   ++      + + T L+V Y KC     A+++F  ++ R++V+W+A+I+A
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
             Q  +  EAL+LF  M     +PN  T  ++L +CA     +LGK IH   +K++ +S 
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           +  G++L+ MYAK G    A   F  +  RD+V+  ++I+GYAQ+G    AI++F KL++
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +  +  T   V+ A + L  L  G  +H  +++    S   ++N+LIDMY+KCGSL  
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 314 SRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           +  +F+     +  ++WN ++  Y ++G  +E +  F+ MR EN   P+SVT+++VL   
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAA 643

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           ++      G+A FH  +  + GF         ++DM  + G++  + +    M  + T +
Sbjct: 644 AYLAAFREGMA-FHACI-IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS 701

Query: 433 ILGSLLGACRVHYNVD 448
              ++L    VH + D
Sbjct: 702 -WNAMLSGYAVHGHGD 716



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 179/326 (54%), Gaps = 4/326 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y+KC  +  AR++FD+M +++ VSW  M++ Y+      E L LF +M   +   N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           + +  +   + A     E GK+IH   ++   +S I V + L+ MYAK G   +A+ +F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  RD+V+ +AII+   Q G  EEA+ LF+++Q + M  N VT  S+L A + L+ L  
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK +H   ++ ++ S +    +L+ MY+KCG  T +   F+ MS R +++WN+++ GY++
Sbjct: 449 GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            G     +++F  +R  + + PD+ T + V+  C+     D+G  +   IV  K GFE +
Sbjct: 509 IGDPYNAIDMFYKLR-LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV--KLGFESD 565

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKN 424
                 ++DM  + G +  A EF+ N
Sbjct: 566 CHVKNALIDMYAKCGSLPSA-EFLFN 590



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 179/332 (53%), Gaps = 19/332 (5%)

Query: 36  LCSNGQLTKALIEMATLGLEM---------RFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86
           +C   QL ++   +AT   E           +  Y  LL++C +   L    ++HA +I 
Sbjct: 1   MCIKHQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIV 57

Query: 87  TCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
           + ++    +     L   ++KC+    AR +FD     + + W +MI AY++     EAL
Sbjct: 58  SGFKHHHSITHLINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEAL 114

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            ++  M+    EP+++TF  VL +C GA   + G   H  I +   E  +++G+ L+DMY
Sbjct: 115 EMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMY 174

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           +K G +  AR VF+ +P+RDVV+  A+I+G +Q     EA++ FR +Q+ G+  + V+  
Sbjct: 175 SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLL 234

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           ++   +  L+ +   + +H +V R +  S V   N LID+YSKCG +  +RRVFD M ++
Sbjct: 235 NLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVDQ 292

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             +SW  M+ GY+ +G   EV+ELF+ M+  N
Sbjct: 293 DDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 201/423 (47%), Gaps = 9/423 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GLE     +  +L AC     L+ G   H  + +      V++   L+  Y+K   
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++FD+M +R+VV+W AMI+  SQ     EA++ F  M     EP+  +   +   
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  EL + IH  + + +F S +  G  L+D+Y+K G +  AR VF+ + ++D VS 
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +++GYA  G   E +ELF K+++  +  N V+  S   A +    L  GK++H   L+
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             I S +++   L+ MY+KCG    ++++F  +  R +++W+A++    + G   E + L
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M+ + K+KP+ VT +++L  C+   +   G ++       K   + ++     +V M
Sbjct: 418 FQEMQNQ-KMKPNRVTLMSILPACADLSLLKLGKSI--HCFTVKADMDSDLSTGTALVSM 474

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV--HYNVDIGEFVGQRLMEIEPENAG 466
             + G    AL     M           + G  ++   YN  I  F   RL  I P+ AG
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA-IDMFYKLRLSAINPD-AG 532

Query: 467 NYV 469
             V
Sbjct: 533 TMV 535


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/573 (41%), Positives = 363/573 (63%), Gaps = 6/573 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC  +  +R G ++H+ ++K  Y   V+++T L+  Y KC+   DA K+FD++ ++N
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWTA+I+ Y    H  EA+  F ++L    +P+ F+   VL +CA       G+ I  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I  S    +++V +SLLDMY K G +  A  +F  +PE+D+VS + +I GYA  GL ++
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A++LF ++Q E +  +  T   VL+A + L AL  G    S + R E  S  VL  +LID
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+T +  +F  M ++  + WNAM+VG S +G  + V  LF+L+ E++ ++PD  
Sbjct: 360 MYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLV-EKHGIRPDEN 418

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEF 421
           T++ +L GC+HGG  + G   F+ +   K  F   P IEHYGC+VD+LGRAG + EA + 
Sbjct: 419 TFIGLLCGCTHGGFVNEGRQFFNNM---KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQL 475

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I NMP +P A + G+LLG C++H +  + E V ++L+E+EP N+GNYV LSN+Y+   RW
Sbjct: 476 INNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRW 535

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           E+  ++R  MKE+ + K    SWIE+D I+H F   D+SH + E++ AK+ +L  + K  
Sbjct: 536 EEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAV 595

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           G+VP    VL+D++EE+KE  L  HSEKLA+ FGLI +P    IRV+KNLR+C DCH+  
Sbjct: 596 GHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAI 655

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +SK+  R++ +RD NRFH  ++G+CSC DYW
Sbjct: 656 KLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 182/348 (52%), Gaps = 3/348 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           + +HA +++       YL   ++         + ++ +F +++E N+  W  MI     K
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               +A++L+  M      PN FT   VL +CA      LG +IHSL++K+ ++  ++V 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +SLL +Y K     +A  VF+ +P+++VVS TAII+GY   G   EAI  F+KL   G+ 
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  +   VL A + L     G+ +  ++    +   V +  SL+DMY KCG+L  +  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  M E+ ++SW+ M+ GY+ +G+ ++ ++LF  M+ EN +KPD  T + VLS C+  G 
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN-LKPDCYTMVGVLSACATLGA 331

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            D G+     ++D ++ F         ++DM  + G V +A E    M
Sbjct: 332 LDLGIWA-SSLMD-RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K L+EM   GL+        +L AC        G+ +  ++  +     V++ T L+  Y
Sbjct: 204 KKLLEM---GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMY 260

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  L  A  +F  M E+++VSW+ MI  Y+      +AL+LF +M   + +P+ +T  
Sbjct: 261 VKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            VL++CA     +LG    SL+ ++ F S+  +G++L+DMY+K G + +A  +F  + ++
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKK 380

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D V   A++ G +  G  +    LF  ++  G+  +  T+  +L   +    +  G+Q  
Sbjct: 381 DRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFF 440

Query: 284 SHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
           +++ R F +   +     ++D+  + G L  + ++ +NM  +   + W A+L G   H
Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           I NY++        +GL      K +H+ +LR  +     L N ++      GS  YS+ 
Sbjct: 18  IKNYLS--------NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKL 69

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF  + E  +  WN M+ G        + + L+  MR    + P++ T   VL  C+   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL-PNNFTIPFVLKACARKL 128

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----FEPTAA 432
               GL +   +V  K G++ ++     ++ +  +     +AL+   ++P       TA 
Sbjct: 129 DVRLGLKIHSLLV--KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           I G +      H+   IG F     M ++P++      L  + A+  R  D T
Sbjct: 187 ITGYISSG---HFREAIGAFKKLLEMGLKPDSFS----LVKVLAACARLGDCT 232


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/571 (41%), Positives = 360/571 (63%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC  +  +R G ++H+ ++K  Y   V+++T L+  Y KC+   DA K+FD++ ++N
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWTA+I+ Y    H  EA+  F ++L    +P+ F+   VL +CA       G+ I  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I  S    +++V +SLLDMY K G +  A  +F  +PE+D+VS + +I GYA  GL ++
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A++LF ++Q E +  +  T   VL+A + L AL  G    S + R E  S  VL  +LID
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+T +  +F  M  +  + WNAM+VG S +G  + V  LF+L+ E++ ++PD  
Sbjct: 360 MYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLV-EKHGIRPDEN 418

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ +L GC+HGG  + G   F+ +        P IEHYGC+VD+LGRAG + EA + I 
Sbjct: 419 TFIGLLCGCTHGGFVNEGRQFFNNMKRVF-SLTPSIEHYGCMVDLLGRAGLLNEAHQLIN 477

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           NMP +P A + G+LLG C++H +  + E V ++L+E+EP N+GNYV LSN+Y+   RWE+
Sbjct: 478 NMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEE 537

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
             ++R  MKE+ + K    SWIE+D I+H F   D+SH + E++ AK+ +L  + K  G+
Sbjct: 538 AEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGH 597

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VP    VL+D++EE+KE  L  HSEKLA+ FGLI +P    IRV+KNLR+C DCH+  K 
Sbjct: 598 VPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKL 657

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD NRFH  ++G+CSC DYW
Sbjct: 658 ISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 182/348 (52%), Gaps = 3/348 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           + +HA +++       YL   ++         + ++ +F +++E N+  W  MI     K
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               +A++L+  M      PN FT   VL +CA      LG +IHSL++K+ ++  ++V 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +SLL +Y K     +A  VF+ +P+++VVS TAII+GY   G   EAI  F+KL   G+ 
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  +   VL A + L     G+ +  ++    +   V +  SL+DMY KCG+L  +  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  M E+ ++SW+ M+ GY+ +G+ ++ ++LF  M+ EN +KPD  T + VLS C+  G 
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN-LKPDCYTMVGVLSACATLGA 331

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            D G+     ++D ++ F         ++DM  + G V +A E    M
Sbjct: 332 LDLGIWA-SSLMD-RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 147/298 (49%), Gaps = 5/298 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K L+EM   GL+        +L AC        G+ +  ++  +     V++ T L+  Y
Sbjct: 204 KKLLEM---GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMY 260

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  L  A  +F  M E+++VSW+ MI  Y+      +AL+LF +M   + +P+ +T  
Sbjct: 261 VKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            VL++CA     +LG    SL+ ++ F S+  +G++L+DMY+K G + +A  +F  +  +
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRK 380

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D V   A++ G +  G  +    LF  ++  G+  +  T+  +L   +    +  G+Q  
Sbjct: 381 DRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFF 440

Query: 284 SHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
           +++ R F +   +     ++D+  + G L  + ++ +NM  +   + W A+L G   H
Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           I NY++        +GL      K +H+ +LR  +     L N ++      GS  YS+ 
Sbjct: 18  IKNYLS--------NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKL 69

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF  + E  +  WN M+ G        + + L+  MR    + P++ T   VL  C+   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL-PNNFTIPFVLKACARKL 128

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----FEPTAA 432
               GL +   +V  K G++ ++     ++ +  +     +AL+   ++P       TA 
Sbjct: 129 DVRLGLKIHSLLV--KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           I G +      H+   IG F     M ++P++      L  + A+  R  D T
Sbjct: 187 ITGYISSG---HFREAIGAFKKLLEMGLKPDSFS----LVKVLAACARLGDCT 232


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/588 (40%), Positives = 375/588 (63%), Gaps = 4/588 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+ +    Y  +L AC     ++ G+R H  ++K  +   +++   LI FY+ C  
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLT 167
              A  +FDE   R+VV+W  MI+A+  K  S +A +L   M + D   P+E T  +++ 
Sbjct: 162 FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVP 221

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     E GK +HS   +   + ++ V +++LDMY K   I  A+ VF  + E+DV+S
Sbjct: 222 ACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLS 281

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T+++SG A+ G  +EA+ LF+K+Q+  +  + +T   VL+A +   AL  GK +H  + 
Sbjct: 282 WTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLID 341

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +FEI   +VL+ +L+DMY+KCGS+  + +VF  M  R V +WNA++ G + HG G + + 
Sbjct: 342 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAIS 401

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M E +K+ PD VT++A+L  CSH G+ D GLA+F  + + K   EP +EHYGCVVD
Sbjct: 402 LFDQM-EHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN-KFQIEPRMEHYGCVVD 459

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +L RA +V +AL FI+NMP +  + +  +LLGACR   + D+ E +G+R++E+EP++ G 
Sbjct: 460 LLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGR 519

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSNLYA   +W+   ++R+ MK K + K PG SWIEL+ ++H F A DRSH   E++
Sbjct: 520 YVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQI 579

Query: 528 SAKVKQLSVKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
            A +++++ +   + G+VP  + VL+D++EE+KE  L  HSEKLA+  GLI TP G+PIR
Sbjct: 580 YAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIR 639

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++KNLR+C DCH+F K  SKVY R++  RD++RFHH  EG+CSC D+W
Sbjct: 640 IVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 187/351 (53%), Gaps = 6/351 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMRERNVVSWTAMISAYS 135
           ++ HA +++T         ++LI F        L+ ARK+F +M+  +      MI  Y+
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +  + +EA++L+  M+      + +T+  VL +CA     +LG++ H  ++K+ F S ++
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVE 254
           V ++L+  Y   G    A  VF+    RDVV+   +I+ +   GL E+A +L  ++ +++
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
            +  + VT  S++ A + L  L  GK +HS+     +   + + N+++DMY KC  +  +
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           + VF+ + E+ V+SW +ML G +K G  +E + LF  M + NK++ D +T + VLS C+ 
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKM-QLNKIELDEITLVGVLSACAQ 326

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G  D+G  + H ++D K     ++     +VDM  + G +  AL+  + M
Sbjct: 327 TGALDQGKYI-HLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 375



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 163/355 (45%), Gaps = 39/355 (10%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYA--KAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           KQ H+L+++++   +    S L+   A   +G ++ AR +F  +   D   C  +I GYA
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     EA+ L+  +   G+  +  TY  VL A + L A+  G++ H  VL+    S + 
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+LI  Y  CGS   +  VFD  + R V++WN M+  +   G+  +  +L + M + +
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRG---------------LAVFHEIVD--CK-DGFEP- 397
            ++PD VT ++++  C+  G  +RG               L V + I+D  CK D  E  
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267

Query: 398 ----------EIEHYGCVVDMLGRAGRVGEALEFIKNMPF---EPTAAILGSLLGACRVH 444
                     ++  +  ++  L ++G   EAL   + M     E     L  +L AC   
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQT 327

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVI---LSNLYASAGRWEDVTRVRELMKEKAV 496
             +D G+++   L+  + E   + V+   L ++YA  G  +   +V   M+ + V
Sbjct: 328 GALDQGKYI--HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 380


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 352/573 (61%), Gaps = 3/573 (0%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++L AC +   L+ G+ +H   +K      +   T L+  Y KC   + A   F+ M  R
Sbjct: 435  SILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            ++V+W ++I+ Y+Q    + A+++F ++  S   P+  T   V+ +CA     + G  IH
Sbjct: 495  DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIH 554

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLD 241
             LI+K  FES  +V ++L+DMYAK G +  A  +F      +D V+   II+ Y Q G  
Sbjct: 555  GLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHA 614

Query: 242  EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            +EAI  F ++++E    N VT+ SVL A + LAA   G   H+ +++    S  ++ NSL
Sbjct: 615  KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 674

Query: 302  IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
            IDMY+KCG L YS ++F+ M  +  +SWNAML GY+ HG G   + LF+LM +E++V+ D
Sbjct: 675  IDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM-QESQVQID 733

Query: 362  SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            SV++++VLS C H G+ + G  +FH + D K   +P++EHY C+VD+LGRAG   E L F
Sbjct: 734  SVSFVSVLSACRHXGLVEEGRKIFHSMSD-KYHIKPDLEHYACMVDLLGRAGLFDETLGF 792

Query: 422  IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
            IK MP EP A + G+LLG+CR+H NV +GE     L+++EP N  ++V+LS++YA +GRW
Sbjct: 793  IKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRW 852

Query: 482  EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
             D  + R  M +  + K PG SW+EL   +H F   D+SHP  E +      L  K ++ 
Sbjct: 853  ADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKI 912

Query: 542  GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
            GYVPD SCVL +V+EE KE  L  HSE+LA+TF L+ TP G+ I+++KNLR+C DCH   
Sbjct: 913  GYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTT 972

Query: 602  KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 973  KFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 201/376 (53%), Gaps = 5/376 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ +H   ++      + + T L+V Y KC     A+++F  ++ R++V+W+A+I+A
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
             Q  +  EAL+LF  M     +PN  T  ++L +CA     +LGK IH   +K++ +S 
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           +  G++L+ MYAK G    A   F  +  RD+V+  ++I+GYAQ+G    AI++F KL++
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +  +  T   V+ A + L  L  G  +H  +++    S   ++N+LIDMY+KCGSL  
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 314 SRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           +  +F+     +  ++WN ++  Y ++G  +E +  F+ MR EN   P+SVT+++VL   
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFVSVLPAA 643

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           ++      G+A FH  +  + GF         ++DM  + G++  + +    M  + T +
Sbjct: 644 AYLAAFREGMA-FHACI-IQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS 701

Query: 433 ILGSLLGACRVHYNVD 448
              ++L    VH + D
Sbjct: 702 -WNAMLSGYAVHGHGD 716



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 179/326 (54%), Gaps = 4/326 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y+KC  +  AR++FD+M +++ VSW  M++ Y+      E L LF +M   +   N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           + +  +   + A     E GK+IH   ++   +S I V + L+ MYAK G   +A+ +F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  RD+V+ +AII+   Q G  EEA+ LF+++Q + M  N VT  S+L A + L+ L  
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK +H   ++ ++ S +    +L+ MY+KCG  T +   F+ MS R +++WN+++ GY++
Sbjct: 449 GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            G     +++F  +R  + + PD+ T + V+  C+     D+G  +   IV  K GFE +
Sbjct: 509 IGDPYNAIDMFYKLR-LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV--KLGFESD 565

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKN 424
                 ++DM  + G +  A EF+ N
Sbjct: 566 CHVKNALIDMYAKCGSLPSA-EFLFN 590



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 179/332 (53%), Gaps = 19/332 (5%)

Query: 36  LCSNGQLTKALIEMATLGLEM---------RFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86
           +C   QL ++   +AT   E           +  Y  LL++C +   L    ++HA +I 
Sbjct: 1   MCIKHQLRRSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIV 57

Query: 87  TCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
           + ++    +     L   ++KC+    AR +FD     + + W +MI AY++     EAL
Sbjct: 58  SGFKHHHSITHLINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEAL 114

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            ++  M+    EP+++TF  VL +C GA   + G   H  I +   E  +++G+ L+DMY
Sbjct: 115 EMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMY 174

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           +K G +  AR VF+ +P+RDVV+  A+I+G +Q     EA++ FR +Q+ G+  + V+  
Sbjct: 175 SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLL 234

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           ++   +  L+ +   + +H +V R +  S V   N LID+YSKCG +  +RRVFD M ++
Sbjct: 235 NLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVDQ 292

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             +SW  M+ GY+ +G   EV+ELF+ M+  N
Sbjct: 293 DDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 201/423 (47%), Gaps = 9/423 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GLE     +  +L AC     L+ G   H  + +      V++   L+  Y+K   
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++FD+M +R+VV+W AMI+  SQ     EA++ F  M     EP+  +   +   
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  EL + IH  + + +F S +  G  L+D+Y+K G +  AR VF+ + ++D VS 
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +++GYA  G   E +ELF K+++  +  N V+  S   A +    L  GK++H   L+
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             I S +++   L+ MY+KCG    ++++F  +  R +++W+A++    + G   E + L
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M+ + K+KP+ VT +++L  C+   +   G ++       K   + ++     +V M
Sbjct: 418 FQEMQNQ-KMKPNRVTLMSILPACADLSLLKLGKSI--HCFTVKADMDSDLSTGTALVSM 474

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV--HYNVDIGEFVGQRLMEIEPENAG 466
             + G    AL     M           + G  ++   YN  I  F   RL  I P+ AG
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA-IDMFYKLRLSAINPD-AG 532

Query: 467 NYV 469
             V
Sbjct: 533 TMV 535


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/612 (39%), Positives = 383/612 (62%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N Q +++LC  G L +AL  +         + ++ L+ +C  + +L  G  VH  ++ + 
Sbjct: 50  NNQLIQSLCKGGNLKQAL-HLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSG 108

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           +    +L T+LI  Y +   +  A K+FDE RER +  W A+  A +   H  E L+L+I
Sbjct: 109 FDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYI 168

Query: 149 RMLRSDTEPNEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +M    T  + FT+  VL +C            GK+IH+ I++  +E++I+V ++LLD+Y
Sbjct: 169 QMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVY 228

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM--ISNYVT 262
           AK G +  A  VF  +P ++ VS +A+I+ +A+  +  +A+ELF+ +  E    + N VT
Sbjct: 229 AKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVT 288

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             ++L A +GLAAL  GK +H ++LR ++ S + + N+LI MY +CG +   +RVFDNM 
Sbjct: 289 MVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMK 348

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R V+SWN+++  Y  HG G++ +++F  M  +  V P  ++++ VL  CSH G+ + G 
Sbjct: 349 KRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQG-VSPSYISFITVLGACSHAGLVEEGK 407

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F  ++  K    P +EHY C+VD+LGRA R+GEA++ I++M FEP   + GSLLG+CR
Sbjct: 408 ILFESMLS-KYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCR 466

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E     L E+EP NAGNYV+L+++YA A  W +   V +L++ + + K PG 
Sbjct: 467 IHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGC 526

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIE+ + +++F + D  +P  EE+ A + +LS + K  GYVP  + VLYD+DEE+KE++
Sbjct: 527 SWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERI 586

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH   KF+SK   R++ +RD NRFHH
Sbjct: 587 VLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHH 646

Query: 623 IVEGTCSCGDYW 634
             +G CSCGDYW
Sbjct: 647 FRDGVCSCGDYW 658


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/575 (41%), Positives = 367/575 (63%), Gaps = 7/575 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L++ C   + L  G+ +H+ +I++     + +   L+  Y KC  + +ARK+FD MRE N
Sbjct: 268 LISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHN 327

Query: 124 VVSWTAMISAYSQKAHSFE--ALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           V+SWTA+++ Y +    +E  A+ +F  ML +    PN FTF+ VL +CA    F+ G+Q
Sbjct: 328 VMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQ 387

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII-SGYAQLG 239
           +H   IK    +   VG+ L+ +YAK+GR+  AR  F+ L E+++VS T +  +      
Sbjct: 388 VHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFN 447

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L+ E  +L R+++  G   +  TYAS+L+  + +  +G G+Q+H+ V++    + + + N
Sbjct: 448 LNSEQ-DLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNN 506

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MYSKCG+   + +VF++M +  VI+W +++ G++KHG   + +ELF  M E   VK
Sbjct: 507 ALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETG-VK 565

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VTY+AVLS CSH G+ D     F  + D   G  P +EHY C+VD+LGR+G + EA+
Sbjct: 566 PNDVTYIAVLSACSHVGLIDEAWKHFTSMRD-NHGIVPRMEHYACMVDLLGRSGLLSEAI 624

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI +MPF+  A +  + LG+CRVH N  +GE   + ++E EP +   Y++LSNLYA+ G
Sbjct: 625 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEG 684

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWEDV  +R+ MK+K +TK+ G SWIE++  +H FH  D  HP  +++  K+ +L++K K
Sbjct: 685 RWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIK 744

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVP+   VL+DV++EQKE+ L  HSEKLA+ F LI TP   PIRV KNLR+C DCH 
Sbjct: 745 NVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHT 804

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K++S V GR++ +RD NRFHH+ +GTCSC DYW
Sbjct: 805 AIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 202/381 (53%), Gaps = 27/381 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSD---ARKMF 116
           +  ++ AC+     + G  +   ++KT Y    V +   LI  + K   L+D   ARK+F
Sbjct: 159 FTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVF 218

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGF 175
           D+MRE+NVV+WT MI+  +Q  ++ EA++LF+ ML  S   P+ FT   +++ CA     
Sbjct: 219 DKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFL 278

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LGK++HS +I+S     + VG SL+DMYAK G + EAR VF+ + E +V+S TA+++GY
Sbjct: 279 SLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGY 338

Query: 236 AQ--LGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            +   G + EA+ +F  + ++G ++ N  T++ VL A + L     G+QVH   ++  + 
Sbjct: 339 VRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLS 398

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           +   + N L+ +Y+K G +  +R+ FD + E+ ++S            +    V+ FNL 
Sbjct: 399 AIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETV---------VDDTNVKDFNLN 449

Query: 353 REENKVKP--------DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            E++  +          S TY ++LSG +  G   +G  +   +V  K GF  ++     
Sbjct: 450 SEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVV--KIGFRTDLSVNNA 507

Query: 405 VVDMLGRAGRVGEALEFIKNM 425
           ++ M  + G    AL+   +M
Sbjct: 508 LISMYSKCGNKEAALQVFNDM 528



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 189/358 (52%), Gaps = 16/358 (4%)

Query: 31  QNLKTLCSNGQLTKALIEMATLGLEM----RFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86
           QN     +  QL KA+  +     E     +      LL  C+  +    G+ +H H + 
Sbjct: 21  QNFNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLH-HKLT 79

Query: 87  TCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEA 143
           T   P    L   LI  Y+K      A  +F  M   +R+VVS++++IS ++   +  +A
Sbjct: 80  TSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKA 139

Query: 144 LNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLL 201
           + +F ++L  D   PNE+ F  V+ +C     F+ G  +   ++K+  F+SH+ VG  L+
Sbjct: 140 VEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELI 199

Query: 202 DMYAKA---GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMI 257
           DM+ K      +  AR VF+ + E++VV+ T +I+  AQ G ++EAI+LF ++ V  G +
Sbjct: 200 DMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYV 259

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T   +++  + +  L  GK++HS V+R  +   + +  SL+DMY+KCG +  +R+V
Sbjct: 260 PDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKV 319

Query: 318 FDNMSERTVISWNAMLVGYSKHGMG--REVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           FD M E  V+SW A++ GY + G G  RE + +F+ M  +  V P+  T+  VL  C+
Sbjct: 320 FDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 173/397 (43%), Gaps = 53/397 (13%)

Query: 153 SDTEPNE----FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           +DTE        T + +L  C       LGK +H  +  SN      + +SL+ +Y+K+ 
Sbjct: 42  TDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSN 101

Query: 209 RIHEARGVFECL--PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE-GMISNYVTYAS 265
               A  +F+ +   +RDVVS ++IIS +A      +A+E+F +L ++ G+  N   + +
Sbjct: 102 DPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTA 161

Query: 266 VLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLT---YSRRVFDNM 321
           V+ A         G  +   VL+     S+V +   LIDM+ K  SL     +R+VFD M
Sbjct: 162 VIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKM 221

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-------- 373
            E+ V++W  M+   +++G   E ++LF  M   +   PD  T   ++S C+        
Sbjct: 222 REKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLG 281

Query: 374 ---HGGMEDRGLAVFHEIVDCK------------------DGF-EPEIEHYGCVVD--ML 409
              H  +   GL V    V C                   DG  E  +  +  +V+  + 
Sbjct: 282 KELHSWVIRSGL-VLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVR 340

Query: 410 GRAGRVGEALEFIKNMPFE----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEI---EP 462
           G  G   EA+    NM  +    P       +L AC    + D GE V  + +++     
Sbjct: 341 GGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAI 400

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           +  GN ++  ++YA +GR E   +  +++ EK +  +
Sbjct: 401 DCVGNGLV--SVYAKSGRMESARKCFDVLFEKNLVSE 435



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 1/162 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +LL+      T+  G+++HA ++K  +R  + +   LI  Y+KC     A ++F++M 
Sbjct: 470 YASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDME 529

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGK 179
           + NV++WT++I+ +++   + +AL LF  ML +  +PN+ T+  VL++C+      E  K
Sbjct: 530 DCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWK 589

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              S+         +   + ++D+  ++G + EA      +P
Sbjct: 590 HFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMP 631


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/608 (40%), Positives = 389/608 (63%), Gaps = 9/608 (1%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           +++LC  G L +AL ++ +         Y+ L+ +C  Q +L  G  +H H+I       
Sbjct: 54  IQSLCKQGNLNQAL-QVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQD 112

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
            +L T+LI  Y++ + + +ARK+FD+ R+R +  W A+  A +   +  E L+L+ RM R
Sbjct: 113 PFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNR 172

Query: 153 SDTEPNEFTFATVLTSCAGAFGFEL----GKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
                + FT+  VL +C  +  F      G++IH  I++  FE H+++ ++LLDMYA+ G
Sbjct: 173 IGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFG 232

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVTYASV 266
            +  A  VF+ +P ++VVS +A+I+ Y++ G   EA+ELFRK+ +E   ++ N VT  SV
Sbjct: 233 CVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSV 292

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L A + LAAL  GK +H ++LR  + S + + ++L+ +Y++CG+L    RVF+ M +R V
Sbjct: 293 LQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDV 352

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           +SWN+++  Y  HG GR+ +++F  M ++  + P  +++++VL  CSH G+ + G  +F 
Sbjct: 353 VSWNSLISSYGIHGFGRKAIQIFKEMIDQG-LSPSPISFVSVLGACSHAGLVEEGKVLFE 411

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            +V     F P +EHY C+VD+LGRA R+ EA + I +M  EP   + GSLLG+CR+H N
Sbjct: 412 SMVRGHKIF-PSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCN 470

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           V++ E    RL E+EP NAGNYV+L+++YA A  W +V RV+ L++ + + K PGRS IE
Sbjct: 471 VELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIE 530

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           + + +++F + D  +P  E+L A + +LS++ KE GYVPD   VLYD+D E+KE+++LGH
Sbjct: 531 IRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGH 590

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLAL FGLI + +G  IR+ KNLR+C DCH+  KF+SK   R++ +RD NRFH   +G
Sbjct: 591 SEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDG 650

Query: 627 TCSCGDYW 634
            CSCGDYW
Sbjct: 651 VCSCGDYW 658


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 384/612 (62%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N Q +++LC  G+L +A I + +       + Y+ L+  C ++ +L    RVH H++   
Sbjct: 49  NNQLIQSLCKEGKLKQA-IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNG 107

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                +L T+LI  Y+    +  ARK+FD+ R+R +  W A+  A +   H  E L L+ 
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 149 RMLRSDTEPNEFTFATVLTSCAGA----FGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +M R   E + FT+  VL +C  +         GK+IH+ + +  + SH+Y+ ++L+DMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVT 262
           A+ G +  A  VF  +P R+VVS +A+I+ YA+ G   EA+  FR++  E   S  N VT
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SVL A + LAAL  GK +H ++LR  + S + + ++L+ MY +CG L   +RVFD M 
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R V+SWN+++  Y  HG G++ +++F  M   N   P  VT+++VL  CSH G+ + G 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA-NGASPTPVTFVSVLGACSHEGLVEEGK 406

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F E +    G +P+IEHY C+VD+LGRA R+ EA + +++M  EP   + GSLLG+CR
Sbjct: 407 RLF-ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E   +RL  +EP+NAGNYV+L+++YA A  W++V RV++L++ + + K PGR
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
            W+E+ + +++F + D  +P+ E++ A + +L+   KE GY+P    VLY+++ E+KE++
Sbjct: 526 CWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHSEKLAL FGLI T +G PIR+ KNLR+C DCH F KF+SK   +++ +RD NRFH 
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645

Query: 623 IVEGTCSCGDYW 634
              G CSCGDYW
Sbjct: 646 FKNGVCSCGDYW 657


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 370/605 (61%), Gaps = 33/605 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+L  C   R +  G++++  ++K  +   V++ + L+  Y K   + DA++ FDEM 
Sbjct: 141 FSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMP 200

Query: 121 ERNVV-------------------------------SWTAMISAYSQKAHSFEALNLFIR 149
           ERNVV                               SWT MI+   Q     EAL++F  
Sbjct: 201 ERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFRE 260

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M  +    ++FTF +VLT+C        GKQIH+ +I+++ + +++VGS+L+DMY+K   
Sbjct: 261 MRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRS 320

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  A  VF+ +P+++V+S TA++ GY Q G  EEA+++F ++Q  G+  +  T  SV+++
Sbjct: 321 IKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISS 380

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LA+L  G Q H   L   + S++ + N+LI +Y KCGS   S R+F  M+ R  +SW
Sbjct: 381 CANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSW 440

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A+L GY++ G   E + LF  M     +KPD VT++ VLS CS  G+ ++GL  F  ++
Sbjct: 441 TALLAGYAQFGKANETIGLFERMLAHG-LKPDGVTFIGVLSACSRAGLVEKGLQYFESMI 499

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             + G  P ++H  C++D+LGRAGR+ EA  FI NMP  P      +LL +CRVH +++I
Sbjct: 500 K-EHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEI 558

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G++    L+ +EP+N  +YV+LS+LYAS G+W+ V ++R  M++K V K+PG SWI+   
Sbjct: 559 GKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKG 618

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F A D+S P   ++ A++++L+ K  E GYVPDMS VL+DV+E +K K+L  HSEK
Sbjct: 619 KVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEK 678

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGLI  P G PIRVIKNLR+C DCHN  KF+SK+  R++ +RD  RFH   +GTCS
Sbjct: 679 LAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCS 738

Query: 630 CGDYW 634
           CGD+W
Sbjct: 739 CGDFW 743



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 201/389 (51%), Gaps = 65/389 (16%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI--------------VF---- 102
           Y +LL  C   +     +++H  ++KT  +P  +L   LI              VF    
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 103 -------------YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                        Y+K   LS  +++F+ M  R+ VSW   IS Y+      +A+ ++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           ML+ +    N  TF+T+L  C+     +LG+QI+  I+K  F S ++VGS L+DMY K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 209 RIHEARGVFECLPERDVVSC-------------------------------TAIISGYAQ 237
            I++A+  F+ +PER+VV C                               T +I+G  Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL+ EA+++FR++++ G   +  T+ SVLTA   L ALG GKQ+H++V+R +    V +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            ++L+DMYSKC S+  +  VF  M ++ VISW AMLVGY ++G   E V++F  M + N 
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEM-QRNG 366

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           V+PD  T  +V+S C++    + G A FH
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEG-AQFH 394



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 2/295 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G  M    + ++L AC +   L  G+++HA++I+T ++  V++ + L+  Y+KC 
Sbjct: 260 EMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCR 319

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F  M ++NV+SWTAM+  Y Q   S EA+ +F  M R+  EP++FT  +V++
Sbjct: 320 SIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVIS 379

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SCA     E G Q H   + S   S I V ++L+ +Y K G    +  +F  +  RD VS
Sbjct: 380 SCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS 439

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHV 286
            TA+++GYAQ G   E I LF ++   G+  + VT+  VL+A S    +  G Q   S +
Sbjct: 440 WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMI 499

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
               I   V     +ID+  + G L  +R   +NM     V+ W  +L     HG
Sbjct: 500 KEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 39/289 (13%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKS----------NF--------------------- 190
           +A++L  C  +      K++H LI+K+          N                      
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR- 249
           + +++  +++L +Y+K G + + + +F  +P RD VS    ISGYA  G   +A+ +++ 
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
            L+   M  N +T++++L   S    +  G+Q++  +L+F   S V + + L+DMY+K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  ++R FD M ER V+  N M+ G  + GM  E   LF  ++E      DS+++  ++
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKER-----DSISWTIMI 242

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +G    G+E   L +F E+     GF  +   +G V+   G    +GE 
Sbjct: 243 TGLMQNGLEREALDMFREMR--LAGFAMDQFTFGSVLTACGSLLALGEG 289



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           Q E  +SN     +++TA   L  L +   V  H+ +  + S+    N+++ +YSK G L
Sbjct: 37  QPETFLSN-----NLITAYYKLGNLAYAHHVFDHIPQPNLFSW----NTILSVYSKLGLL 87

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           +  +++F+ M  R  +SWN  + GY+ +G   + V ++ LM ++  +  + +T+  +L  
Sbjct: 88  SQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLIL 147

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           CS     D G  +  +I+  K GF  ++     +VDM  + G + +A  +   MP
Sbjct: 148 CSKFRCVDLGRQINGQIL--KFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMP 200


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 357/574 (62%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +LLN  V+       + VH H ++      + + +  +  Y +C  + DA+ +FD++ 
Sbjct: 338 YLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RNV +W AMI   +Q+    EAL+LF++M R    P+  TF  +L++  G    E  K+
Sbjct: 398 VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKE 457

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS  I +     + VG++L+ MYAK G    A+ VF+ + ER+V + T +ISG AQ G 
Sbjct: 458 VHSYAIDAGLVD-LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGC 516

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA  LF ++  EG++ +  TY S+L+A +   AL   K+VHSH +   + S + + N+
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNA 576

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ MY+KCGS+  +RRVFD+M ER V SW  M+ G ++HG G + ++LF  M+ E   KP
Sbjct: 577 LVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEG-FKP 635

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  +++AVLS CSH G+ D G   F  +     G EP +EHY C+VD+LGRAG++ EA  
Sbjct: 636 NGYSFVAVLSACSHAGLVDEGRRQFLSLTQ-DYGIEPTMEHYTCMVDLLGRAGQLEEAKH 694

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI NMP EP  A  G+LLGAC  + N+++ EF  +  ++++P++A  YV+LSN+YA+ G 
Sbjct: 695 FILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGN 754

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE    VR +M+ + + K+PGRSWIE+D  +H+F   D SHP  +E+ AK+K L  + K 
Sbjct: 755 WEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKA 814

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD   VL + D+E KE+ L  HSEKLA+ +GL+ TP   PIRV KNLR+C DCH  
Sbjct: 815 EGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTA 874

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SKV GR++  RD  RFHH  +G CSCGDYW
Sbjct: 875 TKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/312 (39%), Positives = 194/312 (62%), Gaps = 3/312 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L AC +  +L+ G+++HAH+I++ ++  V + T L+  Y KC  + DA+ +FD+M 
Sbjct: 33  YLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMV 92

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERNV+SWT MI   +      EA + F++M R    PN +T+ ++L + A A   E  K+
Sbjct: 93  ERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 152

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS  + +     + VG++L+ MYAK+G I +AR VF+ + ERD+ S T +I G AQ G 
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVL--TALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            +EA  LF +++  G + N  TY S+L  +A++   AL   K+VH H  +    S + + 
Sbjct: 213 GQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVG 272

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+LI MY+KCGS+  +R VFD M +R VISWNAM+ G +++G G E   +F  M++E  V
Sbjct: 273 NALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV 332

Query: 359 KPDSVTYLAVLS 370
            PDS TYL++L+
Sbjct: 333 -PDSTTYLSLLN 343



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 224/472 (47%), Gaps = 39/472 (8%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++LNA  +   L   + VH+H +       + +   L+  Y K   + DAR +FD M 
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELG 178
           ER++ SWT MI   +Q     EA +LF++M R    PN  T+ ++L + A       E  
Sbjct: 194 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWV 253

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K++H    K+ F S + VG++L+ MYAK G I +AR VF+ + +RDV+S  A+I G AQ 
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQN 313

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA  +F K+Q EG + +  TY S+L       A    K+VH H +   + S + + 
Sbjct: 314 GCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVG 373

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++ + MY +CGS+  ++ +FD ++ R V +WNAM+ G ++   GRE + LF  MR E   
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREG-F 432

Query: 359 KPDSVTYLAVLSGC-----------SHGGMEDRGL-------AVFHEIVDC--------- 391
            PD+ T++ +LS              H    D GL       A+ H    C         
Sbjct: 433 FPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQV 492

Query: 392 -KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGACRVHYNV 447
             D  E  +  +  ++  L + G   EA      M  E   P A    S+L AC     +
Sbjct: 493 FDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGAL 552

Query: 448 DIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           +  + V    +    +     GN ++  ++YA  G  +D  RV + M E+ V
Sbjct: 553 EWVKEVHSHAVNAGLVSDLRVGNALV--HMYAKCGSVDDARRVFDDMLERDV 602



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 195/376 (51%), Gaps = 13/376 (3%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           MI  Y++  ++ +A+ ++ +M R   +PNE T+ ++L +C      + GK+IH+ II+S 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F+S + V ++L++MY K G I +A+ +F+ + ER+V+S T +I G A  G  +EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++Q EG I N  TY S+L A +   AL   K+VHSH +   +   + + N+L+ MY+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  +R VFD M ER + SW  M+ G ++HG G+E   LF L  E     P+  TYL++L
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLF-LQMERGGCLPNLTTYLSIL 239

Query: 370 SG---CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM- 425
           +     S G +E   +   H+    K GF  ++     ++ M  + G + +A      M 
Sbjct: 240 NASAITSTGALE--WVKEVHKHAG-KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296

Query: 426 --PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
                   A++G L      H    I  F+  +     P++   Y+ L N + S G WE 
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTI--FLKMQQEGFVPDST-TYLSLLNTHVSTGAWEW 353

Query: 484 VTRVRELMKEKAVTKD 499
           V  V +   E  +  D
Sbjct: 354 VKEVHKHAVEVGLVSD 369



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G+      Y ++L+AC +   L   + VH+H +       + +   L+  Y K
Sbjct: 524 FLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAK 583

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + DAR++FD+M ER+V SWT MI   +Q     +AL+LF++M     +PN ++F  V
Sbjct: 584 CGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAV 643

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L++C+ A   + G +Q  SL      E  +   + ++D+  +AG++ EA+     +P
Sbjct: 644 LSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMP 700


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 364/572 (63%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+ C     L  G+ VHA  + T     V + T LI  Y  C  +  AR++FD+M+ R
Sbjct: 268 SILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR 327

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSWT MI  Y++ ++  +A  LF  M     +P+  T+  ++ +CA +    L ++IH
Sbjct: 328 DVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIH 387

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++++ F + + V ++L+ MYAK G I +AR VF+ +  RDVVS +A+I  Y + G  E
Sbjct: 388 SQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGE 447

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA E F  ++   +  + VTY ++L A   L AL  G ++++  ++ ++ S++ + N+LI
Sbjct: 448 EAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALI 507

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +M  K GS+  +R +F+NM +R V++WN M+ GYS HG  RE ++LF+ M +E + +P+S
Sbjct: 508 NMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE-RFRPNS 566

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ VLS CS  G  + G   F  ++D + G  P +E YGC+VD+LGRAG + EA   I
Sbjct: 567 VTFVGVLSACSRAGFVEEGRRFFSYLLDGR-GIVPTMELYGCMVDLLGRAGELDEAELLI 625

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MP +P ++I  +LL ACR++ N+D+ E   +R +  EP +   YV LS++YA+AG WE
Sbjct: 626 NRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWE 685

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V +VR++M+ + V K+ G +WIE++  LHTF   DRSHP   E+ A++ +L    K  G
Sbjct: 686 NVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREG 745

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y+P    VL++V E++KE+ +  HSEKLA+ +G++  P GAPIR+ KNLR+C DCH+ +K
Sbjct: 746 YIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASK 805

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SKV GR++  RD +RFHH   G CSCGDYW
Sbjct: 806 FISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 199/365 (54%), Gaps = 3/365 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L   C+  R    G++V  H+I++  +  +Y    LI  ++ C  + +AR+ FD + 
Sbjct: 64  YVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVE 123

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            + VV+W A+I+ Y+Q  H  EA  LF +M+    EP+  TF  VL +C+   G +LGK+
Sbjct: 124 NKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKE 183

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H+ +IK  F S   +G++L+ MY K G +  AR VF+ L +RDV +   +I GYA+ G 
Sbjct: 184 FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGD 243

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E+A +LF ++Q EG   N +++ S+L   S   AL  GK VH+  +   +   V +  +
Sbjct: 244 GEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATA 303

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY  CGS+  +RRVFD M  R V+SW  M+ GY+++    +   LF  M+EE  ++P
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG-IQP 362

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +TY+ +++ C+          +  ++V  + GF  ++     +V M  + G + +A +
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVV--RAGFGTDLLVDTALVHMYAKCGAIKDARQ 420

Query: 421 FIKNM 425
               M
Sbjct: 421 VFDAM 425



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 212/399 (53%), Gaps = 4/399 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M    +E     +  +L+AC +   L+ G+  HA +IK  +     + T L+  Y K  
Sbjct: 152 QMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGG 211

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  AR++FD + +R+V ++  MI  Y++     +A  LF RM +   +PN  +F ++L 
Sbjct: 212 SMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILD 271

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            C+       GK +H+  + +     + V ++L+ MY   G I  AR VF+ +  RDVVS
Sbjct: 272 GCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVS 331

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T +I GYA+    E+A  LF  +Q EG+  + +TY  ++ A +  A L   +++HS V+
Sbjct: 332 WTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVV 391

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R    + +++  +L+ MY+KCG++  +R+VFD MS R V+SW+AM+  Y ++G G E  E
Sbjct: 392 RAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFE 451

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F+LM+  N V+PD VTY+ +L+ C H G  D G+ ++ + +  K      I     +++
Sbjct: 452 TFHLMK-RNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAI--KADLVSHIPVGNALIN 508

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           M  + G +  A    +NM  +        ++G   +H N
Sbjct: 509 MNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN 546



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 167/314 (53%), Gaps = 7/314 (2%)

Query: 33  LKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           ++    N  +  A    AT+   G++     Y  ++NAC +   L   + +H+ +++  +
Sbjct: 336 IRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGF 395

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              + + T L+  Y KC  + DAR++FD M  R+VVSW+AMI AY +     EA   F  
Sbjct: 396 GTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHL 455

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R++ EP+  T+  +L +C      +LG +I++  IK++  SHI VG++L++M  K G 
Sbjct: 456 MKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGS 515

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  AR +FE + +RDVV+   +I GY+  G   EA++LF ++  E    N VT+  VL+A
Sbjct: 516 IERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSA 575

Query: 270 LSGLAALGHGKQVHSHVL--RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            S    +  G++  S++L  R  +P+ + L   ++D+  + G L  +  + + M  +   
Sbjct: 576 CSRAGFVEEGRRFFSYLLDGRGIVPT-MELYGCMVDLLGRAGELDEAELLINRMPLKPNS 634

Query: 328 S-WNAMLVGYSKHG 340
           S W+ +L     +G
Sbjct: 635 SIWSTLLAACRIYG 648



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 127/213 (59%), Gaps = 1/213 (0%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           T+  +   C       LGKQ+   II+S  + +IY  ++L+ +++  G + EAR  F+ +
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
             + VV+  AII+GYAQLG  +EA  LFR++  E M  + +T+  VL A S  A L  GK
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           + H+ V++    S   +  +L+ MY K GS+  +R+VFD + +R V ++N M+ GY+K G
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
            G +  +LF  M++E   KP+ +++L++L GCS
Sbjct: 243 DGEKAFQLFYRMQQEG-FKPNRISFLSILDGCS 274


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/608 (41%), Positives = 361/608 (59%), Gaps = 38/608 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA-------- 112
           Y TL+ ACV  R L  G+RVHAH   + + P V++  RL+  Y KC  L DA        
Sbjct: 90  YSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMG 149

Query: 113 -----------------------RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                                  RK+FDEM +R+  SW A IS Y       EAL LF  
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRV 209

Query: 150 MLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M R + +  N+FT ++ L + A      LGK+IH  +I++       V S+LLD+Y K G
Sbjct: 210 MQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCG 269

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            + EARG+F+ + +RDVVS T +I    + G  EE   LFR L   G+  N  T+A VL 
Sbjct: 270 SLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLN 329

Query: 269 ALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           A +  AA   GK+VH +++   ++  S+ +  ++L+ MYSKCG+   +RRVF+ M +  +
Sbjct: 330 ACADHAAEHLGKEVHGYMMHAGYDPGSFAI--SALVHMYSKCGNTRVARRVFNEMHQPDL 387

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           +SW +++VGY+++G   E +  F L+ +    KPD VTY+ VLS C+H G+ D+GL  FH
Sbjct: 388 VSWTSLIVGYAQNGQPDEALHFFELLLQSG-TKPDQVTYVGVLSACTHAGLVDKGLEYFH 446

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            I + K G     +HY CV+D+L R+GR  EA   I NMP +P   +  SLLG CR+H N
Sbjct: 447 SIKE-KHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGN 505

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           +++ +   + L EIEPEN   Y+ L+N+YA+AG W +V  VR+ M    + K PG+SWIE
Sbjct: 506 LELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIE 565

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           + + +H F   D SHP   ++   + +LS K KE GYVPD + VL+DV+EEQKE+ L+ H
Sbjct: 566 IKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYH 625

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLA+ FG+I TP G PI+V KNLR CVDCH   K++SK+  RK+++RD NRFH   +G
Sbjct: 626 SEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDG 685

Query: 627 TCSCGDYW 634
           +CSC DYW
Sbjct: 686 SCSCKDYW 693



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 163/341 (47%), Gaps = 41/341 (12%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           +    Q+    EA+ L   + R+D  P+   ++T++ +C      ELG+++H+    SNF
Sbjct: 62  VDVLCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNF 118

Query: 191 ESHIYVGSSLLDMYAKA-------------------------------GRIHEARGVFEC 219
              +++ + LLDMYAK                                GR+ +AR +F+ 
Sbjct: 119 VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDE 178

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALGH 278
           +P+RD  S  A ISGY       EA+ELFR +Q  E   SN  T +S L A + +  L  
Sbjct: 179 MPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRL 238

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK++H +++R E+    V+ ++L+D+Y KCGSL  +R +FD M +R V+SW  M+    +
Sbjct: 239 GKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFE 298

Query: 339 HGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            G   E   LF +LM  ++ V+P+  T+  VL+ C+    E  G  V   ++    G++P
Sbjct: 299 DGRREEGFLLFRDLM--QSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA--GYDP 354

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
                  +V M  + G    A      M  +P      SL+
Sbjct: 355 GSFAISALVHMYSKCGNTRVARRVFNEM-HQPDLVSWTSLI 394


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/649 (37%), Positives = 399/649 (61%), Gaps = 18/649 (2%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTV------PSFPPNPQN---LKTLCSNGQLTKALIEMAT 51
           +R P       SS  ++  +L+V      PS PPN  N   +++LC  G L +AL  ++ 
Sbjct: 4   LRTPYSTHYPPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSH 63

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
                + +  + L+ +   + +L     VH  ++   +    +L T+LI  +++ + + +
Sbjct: 64  ESNPTQ-QTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDN 122

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           ARK+FD+ R+R +  W A+  A +      + L L+ RM       + FT+  +L +C  
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVA 182

Query: 172 A----FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + GK+IH+ I++  + +H++V ++L+DMYA+ G +  A  VF+ +P ++VVS
Sbjct: 183 SECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVS 242

Query: 228 CTAIISGYAQLGLDEEAIELFRK--LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
            +A+I+ YA+ G   EA+ELFR+  L     + N VT  SVL A +  AAL  GK +H++
Sbjct: 243 WSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAY 302

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +LR  + S + + ++LI MY++CG L   + +FD M ++ V+ WN+++  Y  HG GR+ 
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +++F  M +     P  +++++VL  CSH G+ + G  +F  +V  + G +P +EHY C+
Sbjct: 363 IKIFEEMIDHG-FSPSHISFISVLGACSHTGLVEEGKKLFESMVK-EHGIQPSVEHYACM 420

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+LGRA R+ EA + I+++  EP   + GSLLGACR+H +V++ E   +RL ++EP NA
Sbjct: 421 VDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNA 480

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           GNYV+L+++YA A  W++V RV++L+  + + K PGRSWIE+ + +++F + D  +P  E
Sbjct: 481 GNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGE 540

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           +L A +  LS + K+ GY P    VLYD+D+E+KE+++LGHSEKLA+ FGLI T +G  I
Sbjct: 541 QLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTI 600

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+ KNLR+C DCH+  KF+SK   R++ +RD NRFHH  +G CSCGDYW
Sbjct: 601 RITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/573 (40%), Positives = 358/573 (62%), Gaps = 2/573 (0%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           D  ++     R +   ++VHA +  T     + +  +L+    K + L  A  +F++M E
Sbjct: 4   DFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEE 63

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+ VSW+ MI  + +          F  ++R+ ++P+ F+   V+ +C    G  +G+ I
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           HS ++K+      +V S+L+DMYAK G I  A+ +F+ +P++D+V+ T +I+GYA+ G  
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            E+  LF +++ +G + + V   +++ A + L A+   + VH +V        V L  ++
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAM 243

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           IDMY+KCGS+  SR +FD M ++ VISW+AM+  Y  HG GRE +ELF++M     + P+
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGII-PN 302

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T++++L  CSH G+ D GL +F  ++    G  P+++HY C+VD+LGRAGR+ +AL  
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLF-SLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRL 361

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+NM  E    I  + LGACR+H  VD+ E   + L+ ++ +N G+Y++LSN+YA+AGRW
Sbjct: 362 IENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRW 421

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           +DV ++R LM ++ + K PG +WIE+D I++ F A D SH    E+   +K LS K + A
Sbjct: 422 KDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESA 481

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD + VL+DVDEE K  +L  HSEKLA+ FGLI TP+G PIR+ KNLR+C DCH+F 
Sbjct: 482 GYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFC 541

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K VS +  R + +RD NRFHH  EG CSCGDYW
Sbjct: 542 KLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 352/574 (61%), Gaps = 4/574 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +++N   +   +R G+ +HA++I+        V   T L+  Y KC  L  AR++F+ + 
Sbjct: 200 SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT 259

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++ VVSWTAMI+   +     E   LFIRM   +  PNE T  +++  C      +LGKQ
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+ I+++ F   + + ++L+DMY K   I  AR +F+    RDV+  TA++S YAQ   
Sbjct: 320 LHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANC 379

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            ++A  LF +++  G+    VT  S+L+  +   AL  GK VHS++ +  +    +L  +
Sbjct: 380 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA 439

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+KCG +  + R+F     R +  WNA++ G++ HG G E +++F  M E   VKP
Sbjct: 440 LVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM-ERQGVKP 498

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T++ +L  CSH G+   G  +F ++V    G  P+IEHYGC+VD+LGRAG + EA E
Sbjct: 499 NDITFIGLLHACSHAGLVTEGKKLFEKMVHTF-GLVPQIEHYGCMVDLLGRAGLLDEAHE 557

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            IK+MP +P   + G+L+ ACR+H N  +GE    +L+EIEPEN G  V++SN+YA+A R
Sbjct: 558 MIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANR 617

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W D   VR+ MK   + K+PG S IE++  +H F   D+SHP    ++  + ++  K  E
Sbjct: 618 WSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNE 677

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVPD S VL ++DEE+KE  L  HSEKLA+ FGLI T    PIR++KNLR+C DCH  
Sbjct: 678 AGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAA 737

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +SK+YGR + +RD+NRFHH  EG CSCGDYW
Sbjct: 738 TKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 189/358 (52%), Gaps = 5/358 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC      + G+ +H  ++K      V++   L++ Y +C C+  AR +FD+M ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSW+ MI + S+      AL L   M      P+E    +++   A      +GK +H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 183 SLIIKSNFESHIYV--GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           + +I+++   H+ V   ++LLDMYAK G +  AR +F  L ++ VVS TA+I+G  +   
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EE  +LF ++Q E +  N +T  S++       AL  GKQ+H+++LR      + L  +
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATA 338

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY KC  +  +R +FD+   R V+ W AML  Y++     +   LF+ MR    V+P
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG-VRP 397

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             VT +++LS C+  G  D G  V H  +D K+  E +      +VDM  + G +  A
Sbjct: 398 TKVTIVSLLSLCAVAGALDLGKWV-HSYID-KERVEVDCILNTALVDMYAKCGDINAA 453



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 160/330 (48%), Gaps = 39/330 (11%)

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           F   +VL +C      +LGK+IH  ++K   +  ++VG++L+ MY +   +  AR VF+ 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           + ERDVVS + +I   ++    + A+EL R++    +  + V   S++   +  A +  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 280 KQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           K +H++V+R     +  V    +L+DMY+KCG L  +R++F+ ++++TV+SW AM+ G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +     E  +LF  M+EEN + P+ +T L+++  C   G    G  +   I+  ++GF  
Sbjct: 275 RSNRLEEGTKLFIRMQEEN-IFPNEITMLSLIVECGFTGALQLGKQLHAYIL--RNGFSV 331

Query: 398 EIEHYGCVVDMLGR-------------------------------AGRVGEALEFIKNM- 425
            +     +VDM G+                               A  + +A      M 
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 426 --PFEPTAAILGSLLGACRVHYNVDIGEFV 453
                PT   + SLL  C V   +D+G++V
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 380/605 (62%), Gaps = 33/605 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE-- 118
           + TLL     +  ++ G+++H H++K  +   V++ + L+  Y+K   +S ARK+FDE  
Sbjct: 146 FSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP 205

Query: 119 -----------------------------MRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                                        MRER+ +SWT+MI+ ++Q     +A+++F  
Sbjct: 206 EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFRE 265

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M   + + +++TF +VLT+C G    + GKQ+H+ II+++++ +I+V S+L+DMY K   
Sbjct: 266 MKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKN 325

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  A  VF+ +  ++VVS TA++ GY Q G  EEA++ F  +Q  G+  +  T  SV+++
Sbjct: 326 IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISS 385

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LA+L  G Q H+  L   + S++ + N+L+ +Y KCGS+  S R+F+ +S +  ++W
Sbjct: 386 CANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTW 445

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A++ GY++ G   E + LF  M     +KPD VT++ VLS CS  G+ ++G  +F  ++
Sbjct: 446 TALVSGYAQFGKANETIGLFESMLAHG-LKPDKVTFIGVLSACSRAGLVEKGNQIFESMI 504

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           + + G  P  +HY C++D+  RAGR+ EA  FI  MPF P A    +LL +CR + N+DI
Sbjct: 505 N-EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDI 563

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G++  + LME++P N  +YV+LS++YA+ G+WE+V R+R+ M++K + K+PG SWI+   
Sbjct: 564 GKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKN 623

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F A D+S+P  +++ +++++L+ K  + GYVPDM+ VL+DV + +K K+L  HSEK
Sbjct: 624 QVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEK 683

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGL+  P G PIRV+KNLR+C DCHN  K++SK+  R++ +RD  RFH   +GTCS
Sbjct: 684 LAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCS 743

Query: 630 CGDYW 634
           CGD+W
Sbjct: 744 CGDFW 748



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 210/432 (48%), Gaps = 67/432 (15%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C         + +H+H+IKT   P  +L   LI  Y K   +  A K+FD+M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT------------------------- 155
             N+ SW  ++SAYS+     E   LF  M R D                          
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 156 --------EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
                     N  TF+T+L   +     +LG+QIH  ++K  F S+++VGS L+DMY+K 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 208 GRIHEARGVFECLP-------------------------------ERDVVSCTAIISGYA 236
           G I  AR VF+ LP                               ERD +S T++I+G+ 
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q GLD +AI++FR++++E +  +  T+ SVLTA  G+ AL  GKQVH++++R +    + 
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIF 311

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + ++L+DMY KC ++  +  VF  M+ + V+SW AMLVGY ++G   E V+ F+ M++  
Sbjct: 312 VASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG 371

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            ++PD  T  +V+S C++    + G A FH       G    I     +V + G+ G + 
Sbjct: 372 -IEPDDFTLGSVISSCANLASLEEG-AQFHARA-LTSGLISFITVSNALVTLYGKCGSIE 428

Query: 417 EALEFIKNMPFE 428
           ++      + F+
Sbjct: 429 DSHRLFNEISFK 440



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 162/309 (52%), Gaps = 9/309 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM    L+M    + ++L AC     L+ G++VHA++I+T Y+  +++ + L+  Y KC+
Sbjct: 265 EMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK 324

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F +M  +NVVSWTAM+  Y Q  +S EA+  F  M +   EP++FT  +V++
Sbjct: 325 NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVIS 384

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SCA     E G Q H+  + S   S I V ++L+ +Y K G I ++  +F  +  +D V+
Sbjct: 385 SCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVT 444

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA++SGYAQ G   E I LF  +   G+  + VT+  VL+A S    +  G Q+   ++
Sbjct: 445 WTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMI 504

Query: 288 RFEIPSYVVLQN---SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVG---YSKHG 340
                  V +Q+    +ID++S+ G +  +R   + M      ISW  +L     Y    
Sbjct: 505 NEH--GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMD 562

Query: 341 MGREVVELF 349
           +G+   E  
Sbjct: 563 IGKWAAEFL 571



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 176/363 (48%), Gaps = 42/363 (11%)

Query: 137 KAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           + H+F +A NL   ++++   P  F    +++S A         ++   +   N    +Y
Sbjct: 21  ETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN----LY 76

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR-KLQVE 254
             +++L  Y+K GR+ E   +F+ +P RD VS  ++ISGYA  GL  ++++ +   L+ +
Sbjct: 77  SWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKND 136

Query: 255 GMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           G  + N +T++++L   S    +  G+Q+H HV++F   SYV + + L+DMYSK G ++ 
Sbjct: 137 GSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISC 196

Query: 314 SRRVFDNMSERTV-------------------------------ISWNAMLVGYSKHGMG 342
           +R+VFD + E+ V                               ISW +M+ G++++G+ 
Sbjct: 197 ARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLD 256

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           R+ +++F  M+ EN ++ D  T+ +VL+ C        G  V   I+  +  ++  I   
Sbjct: 257 RDAIDIFREMKLEN-LQMDQYTFGSVLTACGGVMALQEGKQVHAYII--RTDYKDNIFVA 313

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEIE 461
             +VDM  +   +  A    K M  +   +    L+G  +  Y+ + +  F   +   IE
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 462 PEN 464
           P++
Sbjct: 374 PDD 376



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 12/237 (5%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  K   +M   G+E       +++++C N  +L  G + HA  + +     + +   L+
Sbjct: 359 EAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALV 418

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + D+ ++F+E+  ++ V+WTA++S Y+Q   + E + LF  ML    +P++ 
Sbjct: 419 TLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKV 478

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSN----FESHIYVGSSLLDMYAKAGRIHEARGV 216
           TF  VL++C+ A   E G QI   +I  +     + H    + ++D++++AGRI EAR  
Sbjct: 479 TFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHY---TCMIDLFSRAGRIEEARNF 535

Query: 217 FECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
              +P   D +S   ++S    Y  + + + A E   +L      S YV  +SV  A
Sbjct: 536 INKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS-YVLLSSVYAA 591


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 380/589 (64%), Gaps = 8/589 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G++     + +++ +C + R L   + +    +K+ +     + T L+V  +KC+
Sbjct: 285 KMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCK 344

Query: 108 CLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
            + DA  +F  M E +NVVSWTAMIS   Q   + +A+NLF +M R   +PN FT++ +L
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           T     F  E+    H+ +IK+N+E    VG++LLD Y K G   +A  VFE +  +D++
Sbjct: 405 TVHYPVFVSEM----HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLM 460

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA-LSGLAALGHGKQVHSH 285
           + +A+++GYAQ G  EEA +LF +L  EG+  N  T++SV+ A  S  AA   GKQ H++
Sbjct: 461 AWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAY 520

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            ++  + + + + ++L+ MY+K G++  +  VF    ER ++SWN+M+ GYS+HG  ++ 
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA 580

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +E+F+ M++ N +  D+VT++ V++ C+H G+ ++G   F+ +++      P ++HY C+
Sbjct: 581 LEVFDEMQKRN-MDVDAVTFIGVITACTHAGLVEKGQKYFNSMIN-DHHINPTMKHYSCM 638

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+  RAG + +A+  I  MPF P A +  +LLGA RVH NV++GE   ++L+ ++PE++
Sbjct: 639 IDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDS 698

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YV+LSN+YA+AG W++ T VR+LM ++ V K+PG SWIE+    ++F A D +HP+  
Sbjct: 699 AAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSN 758

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           ++ +K+ +LS++ K+AGY PD   V +D+++EQKE +L  HSE+LA+ FGLI TP   PI
Sbjct: 759 QIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPI 818

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +++KNLR+C DCHNF K VS V  R + +RD NRFHH  +G CSCGDYW
Sbjct: 819 QIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 180/332 (54%), Gaps = 5/332 (1%)

Query: 112 ARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
           A  +FD++  R   +     ++ +YS+   + EALNLF+ +L S  +P+E T + V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           AG+   +LG+Q+H   +K     H+ VG+SL+DMY K   +++ R VF+ + ER+VVS T
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           ++++GY+  GL     ELF ++Q EG++ N  T ++V+ AL     +G G QVH+ V++ 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                + + NSLI +YS+ G L  +R VFD M  R  ++WN+M+ GY ++G   EV E+F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           N M+    VKP  +T+ +V+  C+   + +  L    +    K GF  +      ++  L
Sbjct: 284 NKMQLAG-VKPTHMTFASVIKSCA--SLRELALVKLMQCKALKSGFTTDQIVITALMVAL 340

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
            +   + +AL     M          +++  C
Sbjct: 341 SKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 171/308 (55%), Gaps = 2/308 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           + N C      + G++VH   +K      V + T L+  Y K E ++D R++FDEM ERN
Sbjct: 99  VFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERN 158

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWT++++ YS          LF +M      PN +T +TV+ +        +G Q+H+
Sbjct: 159 VVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHA 218

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           +++K  FE  I V +SL+ +Y++ G + +AR VF+ +  RD V+  ++I+GY + G D E
Sbjct: 219 MVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
             E+F K+Q+ G+   ++T+ASV+ + + L  L   K +    L+    +  ++  +L+ 
Sbjct: 279 VFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMV 338

Query: 304 MYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             SKC  +  +  +F  M E + V+SW AM+ G  ++G   + V LF+ MR E  VKP+ 
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG-VKPNH 397

Query: 363 VTYLAVLS 370
            TY A+L+
Sbjct: 398 FTYSAILT 405



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 175/312 (56%), Gaps = 6/312 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++ A VN+  +  G +VHA ++K  +   + +   LI  Y++   L DAR +FD+M  R
Sbjct: 199 TVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR 258

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+W +MI+ Y +     E   +F +M  +  +P   TFA+V+ SCA      L K + 
Sbjct: 259 DWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQ 318

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLD 241
              +KS F +   V ++L+   +K   + +A  +F  + E ++VVS TA+ISG  Q G +
Sbjct: 319 CKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGN 378

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           ++A+ LF +++ EG+  N+ TY+++LT    +       ++H+ V++        +  +L
Sbjct: 379 DQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFV----SEMHAEVIKTNYERSSSVGTAL 434

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +D Y K G+   + +VF+ +  + +++W+AML GY++ G   E  +LF+ + +E  +KP+
Sbjct: 435 LDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG-IKPN 493

Query: 362 SVTYLAVLSGCS 373
             T+ +V++ C+
Sbjct: 494 EFTFSSVINACA 505


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 366/586 (62%), Gaps = 2/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +GL+     + ++L+ C     L  G+ VHA  +       + + T LI  Y  C  
Sbjct: 250 MQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGS 309

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  AR++FD M+ R+VVSWT MI  Y++  +  +A  LF  M     +P+  T+  ++ +
Sbjct: 310 IEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +      ++IHS +  + F + + V ++L+ MYAK G I +AR VF+ +P RDVVS 
Sbjct: 370 CAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSW 429

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           +A+I  Y + G   EA E F  ++   +  + VTY ++L A   L AL  G ++++  ++
Sbjct: 430 SAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK 489

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            ++ S+V L N+LI M +K GS+  +R +FD M  R VI+WNAM+ GYS HG  RE + L
Sbjct: 490 ADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F+ M +E + +P+SVT++ VLS CS  G  D G   F  +++ + G  P ++ YGC+VD+
Sbjct: 550 FDRMLKE-RFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGR-GIVPTVKLYGCMVDL 607

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAG + EA   IK+MP +PT++I  SLL ACR+H N+D+ E   +R + I+P +   Y
Sbjct: 608 LGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVY 667

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V LS++YA+AG WE+V +VR++M+ + + K+ G +WIE+   +HTF   DRSHP+  E+ 
Sbjct: 668 VQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIY 727

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           A++ +L    K  GY+P    VL+DV E+QKE+ +  HSEKLA+ +G++  P G PIR+ 
Sbjct: 728 AELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIY 787

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH+ +KF+SKV GR++  RD +RFHH  +G CSCGDYW
Sbjct: 788 KNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 217/411 (52%), Gaps = 7/411 (1%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLR 75
           F   QL VPS        + + +N  L +    +   G  +    Y  L   C   R   
Sbjct: 19  FGSLQLPVPSARFRSTFTRRVGANDVLQR----LGEGGNHIDSRTYVKLFQRCTELRDAA 74

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G++V  H+I+   +  +Y    LI  Y+ C  +++AR++FD +  + VV+W A+I+ Y+
Sbjct: 75  LGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYA 134

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q  H  EA  LF +M+    EP+  TF +VL +C+   G   GK++H+ ++ + F S   
Sbjct: 135 QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFR 194

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           +G++L+ MY K G + +AR VF+ L  RDV +   ++ GYA+ G  E+A ELF ++Q  G
Sbjct: 195 IGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVG 254

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N +++ S+L       AL  GK VH+  +   +   + +  SLI MY+ CGS+  +R
Sbjct: 255 LKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGAR 314

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           RVFDNM  R V+SW  M+ GY+++G   +   LF  M+EE  ++PD +TY+ +++ C+  
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG-IQPDRITYMHIMNACAIS 373

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              +    + H  VD   GF  ++     +V M  + G + +A +    MP
Sbjct: 374 ANLNHAREI-HSQVDIA-GFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP 422



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 217/412 (52%), Gaps = 4/412 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   GLE     + ++L+AC +   L  G+ VHA ++   +     + T L+  Y K  
Sbjct: 148 QMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGG 207

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DAR++FD +  R+V ++  M+  Y++     +A  LF RM +   +PN+ +F ++L 
Sbjct: 208 SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILD 267

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            C        GK +H+  + +     I V +SL+ MY   G I  AR VF+ +  RDVVS
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVS 327

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T +I GYA+ G  E+A  LF  +Q EG+  + +TY  ++ A +  A L H +++HS V 
Sbjct: 328 WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVD 387

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                + +++  +L+ MY+KCG++  +R+VFD M  R V+SW+AM+  Y ++G G E  E
Sbjct: 388 IAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFE 447

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F+LM+  N ++PD VTY+ +L+ C H G  D G+ ++ + +  K      +     ++ 
Sbjct: 448 TFHLMKRSN-IEPDGVTYINLLNACGHLGALDVGMEIYTQAI--KADLVSHVPLGNALII 504

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
           M  + G V E   +I +           +++G   +H N     ++  R+++
Sbjct: 505 MNAKHGSV-ERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLK 555


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/610 (40%), Positives = 353/610 (57%), Gaps = 43/610 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y TLL  C+ QR L+ G++VHAH IKT     +Y+  RL+  Y KC  L DA K+FDEM 
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAH-IKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMV 180

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA---------- 170
            R++ SW  MIS Y +  +  +A NLF +M   D     F++  +++ C           
Sbjct: 181 HRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDN----FSWTAIISGCVQHNRPEEALE 236

Query: 171 --------------------------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
                                           +GK+IH  I++   +S   V  SLLDMY
Sbjct: 237 LYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMY 296

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G I EAR +F+ + ERDVVS T +I  Y + G  EE   LFR L    ++ N  T+A
Sbjct: 297 GKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFA 356

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            VL A + LAA   GKQ+H++++R    S+    ++L+ MYSKCG +  ++ VF+ + + 
Sbjct: 357 GVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQP 416

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            + SW ++LVGY++HG   + +  F L+ +    KPD + ++ VLS C+H G+ D+GL  
Sbjct: 417 DLFSWTSLLVGYAQHGQHDKALHFFELLLKSG-TKPDGIAFIGVLSACAHAGLVDKGLEY 475

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           FH I + K G    I+HY C++D+L RAG+  EA   I  MP +P   I  +LLG CR+H
Sbjct: 476 FHSIKE-KHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIH 534

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            N+++ +   + L EIEPEN   YV L+N+YASAG   +   +RE M  + + K PG SW
Sbjct: 535 GNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSW 594

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           IE+ + +H F   D SHP  +E+   + +LS + KE GYVPD + VL+DV+ EQKE+ L 
Sbjct: 595 IEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLS 654

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLA+ FG+I TP G PI+V KNLR CVDCHN  KF+S + GRK+ +RD NRFH   
Sbjct: 655 YHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFE 714

Query: 625 EGTCSCGDYW 634
            G+CSC DYW
Sbjct: 715 GGSCSCKDYW 724



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 159/330 (48%), Gaps = 44/330 (13%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           EA+ L  R+     +P    + T+L  C      + GKQ+H+  IK++    +Y+ + LL
Sbjct: 106 EAVQLLYRI----EKPYASIYLTLLKFCLKQRALKEGKQVHAH-IKTSGSIGLYISNRLL 160

Query: 202 DMYAKAGRI-------------------------------HEARGVFECLPERDVVSCTA 230
           DMYAK G +                                +AR +F+ +P RD  S TA
Sbjct: 161 DMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTA 220

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           IISG  Q    EEA+EL+R +Q      SN  T +S L A + + +L  GK++H H++R 
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S  V+  SL+DMY KCGS+  +R +FD M ER V+SW  M+  Y K+G   E   LF
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF 340

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             +   N + P+  T+  VL+ C+    ED G  +   +V  + GF+        +V M 
Sbjct: 341 RHLMNSN-IMPNDFTFAGVLNACADLAAEDLGKQIHAYMV--RVGFDSFSSAASALVHMY 397

Query: 410 GRAGRVGEALEFIKNMP----FEPTAAILG 435
            + G +  A    + +P    F  T+ ++G
Sbjct: 398 SKCGDIENAKSVFEILPQPDLFSWTSLLVG 427



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 30/215 (13%)

Query: 178 GKQIHSLIIKS---NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           GK++ SLII +      S  ++G  ++    K   I+           +       I+ G
Sbjct: 47  GKEVKSLIILTRDLTTPSQTHIGKKIILFDGKDAYINR------LCDSKLFKEAIDILCG 100

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA----ALGHGKQVHSHVLRFE 290
            ++L    EA++L  +++          YAS+   L        AL  GKQVH+H+ +  
Sbjct: 101 QSRL---REAVQLLYRIEK--------PYASIYLTLLKFCLKQRALKEGKQVHAHI-KTS 148

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
               + + N L+DMY+KCGSL  + +VFD M  R + SWN M+ GY K G   +   LF+
Sbjct: 149 GSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFD 208

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
            M        D+ ++ A++SGC      +  L ++
Sbjct: 209 KMPNR-----DNFSWTAIISGCVQHNRPEEALELY 238


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 351/572 (61%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC N   +  G+ VH   +K C          L+  Y KC  L  A  +FD M  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VV+WT++I+AY+++  S EA+ LF  M R    P+ FT  TVL +CA     E GK +H
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + I +++ +S+I+V ++L+DMYAK G + +A  VF  +P +D++S   +I GY++  L  
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LF  + +E M  +  T A +L A + LA+L  GK+VH H+LR    S   + N+L+
Sbjct: 183 EALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALV 241

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY KCG    +R +FD +  + +I+W  M+ GY  HG G   +  FN MR+   ++PD 
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAG-IEPDE 300

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V+++++L  CSH G+ D G   F+ + D +   +P++EHY C+VD+L R+G++  A +FI
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQD-ECNVKPKLEHYACIVDLLARSGKLAMAYKFI 359

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           K+MP EP A I G+LL  CR+H++V + E V + + E+EPEN G YV+L+N YA A +WE
Sbjct: 360 KSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWE 419

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V ++R+ +  + + K+PG SWIE+   +H F A + SHP  +++   +K+L  K KE G
Sbjct: 420 EVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEG 479

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P     L + D  QKE  L GHSEKLA+ FG++  P    IRV KNLR+C DCH  AK
Sbjct: 480 YFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAK 539

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SK  GR++ LRD NRFHH  +G C C  +W
Sbjct: 540 FISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 154/295 (52%), Gaps = 5/295 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+        T+L+AC    +L  G+ VH ++ +   +  +++   L+  Y KC 
Sbjct: 89  EMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCG 148

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA  +F EM  ++++SW  MI  YS+ +   EAL+LF  M+  + +P+  T A +L 
Sbjct: 149 SMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-EMKPDGTTLACILP 207

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     + GK++H  I+++ F S   V ++L+DMY K G    AR +F+ +P +D+++
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLIT 267

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T +I+GY   G    AI  F +++  G+  + V++ S+L A S    L  G +  + V+
Sbjct: 268 WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFN-VM 326

Query: 288 RFEIPSYVVLQN--SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           + E      L++   ++D+ ++ G L  + +   +M  E     W A+L G   H
Sbjct: 327 QDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/619 (40%), Positives = 380/619 (61%), Gaps = 19/619 (3%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-C 88
           L +LC N QL +AL    EM   G+E       ++L AC +   LR G+ +HA+ +K   
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                ++ + L+  Y  C+ +   R++FD M +R +  W AMI+ YSQ  H  EAL LFI
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            M  S     N  T A V+ +C  +  F   + IH  ++K   +   +V ++L+DMY++ 
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS-------- 258
           G+I  A  +F  + +RD+V+   +I+GY      E+A+ L  K+Q +E  +S        
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 259 --NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N +T  ++L + + L+AL  GK++H++ ++  + + V + ++L+DMY+KCG L  SR+
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD + ++ VI+WN +++ Y  HG G+E ++L  +M  +  VKP+ VT+++V + CSH G
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-VKPNEVTFISVFAACSHSG 632

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILG 435
           M D GL +F+ ++    G EP  +HY CVVD+LGRAGR+ EA + +  MP +   A    
Sbjct: 633 MVDEGLRIFY-VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGA R+H N++IGE   Q L+++EP  A +YV+L+N+Y+SAG W+  T VR  MKE+ 
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K+PG SWIE    +H F A D SHP  E+LS  ++ L  + ++ GYVPD SCVL++V+
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           E++KE +L GHSEKLA+ FG++ T  G  IRV KNLR+C DCH   KF+SK+  R++ LR
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH    GTCSCGDYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 198/386 (51%), Gaps = 12/386 (3%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNK 105
           ++M  LG++     +  LL A  + + +  G+++HAH+ K  Y    V +   L+  Y K
Sbjct: 86  VDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRK 145

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C       K+FD + ERN VSW ++IS+         AL  F  ML  + EP+ FT  +V
Sbjct: 146 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 166 LTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           +T+C+      G  +GKQ+H+  ++   E + ++ ++L+ MY K G++  ++ +      
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD+V+   ++S   Q     EA+E  R++ +EG+  +  T +SVL A S L  L  GK++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 283 HSHVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           H++ L+    +  S+V   ++L+DMY  C  +   RRVFD M +R +  WNAM+ GYS++
Sbjct: 325 HAYALKNGSLDENSFV--GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
              +E + LF  M E   +  +S T   V+  C   G   R  A+   +V  K G + + 
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV--KRGLDRDR 440

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM 425
                ++DM  R G++  A+     M
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 196/379 (51%), Gaps = 18/379 (4%)

Query: 63  TLLNACVNQRTLRG---GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ AC N     G   G++VHA+ ++        + T L+  Y K   L+ ++ +    
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSF 262

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             R++V+W  ++S+  Q     EAL     M+    EP+EFT ++VL +C+       GK
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 180 QIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++H+  +K+ + + + +VGS+L+DMY    ++   R VF+ + +R +    A+I+GY+Q 
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 239 GLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
             D+EA+ LF  + +  G+++N  T A V+ A     A    + +H  V++  +     +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY--SKHGMGREVV--ELFNLMR 353
           QN+L+DMYS+ G +  + R+F  M +R +++WN M+ GY  S+H     ++  ++ NL R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502

Query: 354 EENK------VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           + +K      +KP+S+T + +L  C+      +G  +    +  K+    ++     +VD
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI--KNNLATDVAVGSALVD 560

Query: 408 MLGRAGRVGEALEFIKNMP 426
           M  + G +  + +    +P
Sbjct: 561 MYAKCGCLQMSRKVFDQIP 579



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSL 200
           EA+  ++ M+    +P+ + F  +L + A     ELGKQIH+ + K  +    + V ++L
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           +++Y K G       VF+ + ER+ VS  ++IS        E A+E FR +  E +  + 
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199

Query: 261 VTYASVLTALSGLA---ALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            T  SV+TA S L     L  GKQVH++ LR  E+ S+++  N+L+ MY K G L  S+ 
Sbjct: 200 FTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTLVAMYGKLGKLASSKV 257

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           +  +   R +++WN +L    ++    E +E    M  E  V+PD  T  +VL  CSH
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSH 314


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 379/612 (61%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N Q +++LC  G L +A I +           ++ L+ +C  Q +L  G  VH  ++ + 
Sbjct: 50  NNQLIQSLCKGGNLKQA-IHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSG 108

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           +    +L T+LI  Y +   +  ARK+FDE RER +  W A+  A +      E L+L++
Sbjct: 109 FDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYV 168

Query: 149 RMLRSDTEPNEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +M       + FT+  VL +C          + GK+IH+ I++  +E++I+V ++LLD+Y
Sbjct: 169 QMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVY 228

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVT 262
           AK G +  A  VF  +P ++ VS +A+I+ +A+  +  +A+ELF+ + +E    + N VT
Sbjct: 229 AKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVT 288

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             +VL A +GLAAL  GK +H ++LR  + S + + N+LI MY +CG +   +RVFDNM 
Sbjct: 289 MVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMK 348

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            R V+SWN+++  Y  HG G++ +++F  M  +    P  ++++ VL  CSH G+ + G 
Sbjct: 349 NRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGS-SPSYISFITVLGACSHAGLVEEGK 407

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F  ++  K    P +EHY C+VD+LGRA R+ EA++ I++M FEP   + GSLLG+CR
Sbjct: 408 ILFESMLS-KYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCR 466

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E     L E+EP NAGNYV+L+++YA A  W +   V +L++ + + K PG 
Sbjct: 467 IHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGC 526

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIE+ + +++F + D  +P  EE+ A + +LS + K  GYVP  + VLYD+DEE+KE++
Sbjct: 527 SWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERI 586

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH   KF+SK   R++ +RD NRFHH
Sbjct: 587 VLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHH 646

Query: 623 IVEGTCSCGDYW 634
             +G CSCGDYW
Sbjct: 647 FKDGVCSCGDYW 658


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/619 (40%), Positives = 380/619 (61%), Gaps = 19/619 (3%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-C 88
           L +LC N QL +AL    EM   G+E       ++L AC +   LR G+ +HA+ +K   
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                ++ + L+  Y  C+ +   R++FD M +R +  W AMI+ YSQ  H  EAL LFI
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            M  S     N  T A V+ +C  +  F   + IH  ++K   +   +V ++L+DMY++ 
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS-------- 258
           G+I  A  +F  + +RD+V+   +I+GY      E+A+ L  K+Q +E  +S        
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 259 --NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N +T  ++L + + L+AL  GK++H++ ++  + + V + ++L+DMY+KCG L  SR+
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD + ++ VI+WN +++ Y  HG G+E ++L  +M  +  VKP+ VT+++V + CSH G
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-VKPNEVTFISVFAACSHSG 632

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILG 435
           M D GL +F+ ++    G EP  +HY CVVD+LGRAGR+ EA + +  MP +   A    
Sbjct: 633 MVDEGLRIFY-VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGA R+H N++IGE   Q L+++EP  A +YV+L+N+Y+SAG W+  T VR  MKE+ 
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K+PG SWIE    +H F A D SHP  E+LS  ++ L  + ++ GYVPD SCVL++V+
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           E++KE +L GHSEKLA+ FG++ T  G  IRV KNLR+C DCH   KF+SK+  R++ LR
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH    GTCSCGDYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 198/386 (51%), Gaps = 12/386 (3%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNK 105
           ++M  LG++     +  LL A  + + +  G+++HAH+ K  Y    V +   L+  Y K
Sbjct: 86  VDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRK 145

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C       K+FD + ERN VSW ++IS+         AL  F  ML  + EP+ FT  +V
Sbjct: 146 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 166 LTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           +T+C+      G  +GKQ+H+  ++   E + ++ ++L+ MY K G++  ++ +      
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD+V+   ++S   Q     EA+E  R++ +EG+  +  T +SVL A S L  L  GK++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 283 HSHVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           H++ L+    +  S+V   ++L+DMY  C  +   RRVFD M +R +  WNAM+ GYS++
Sbjct: 325 HAYALKNGSLDENSFV--GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
              +E + LF  M E   +  +S T   V+  C   G   R  A+   +V  K G + + 
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV--KRGLDRDR 440

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM 425
                ++DM  R G++  A+     M
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 196/379 (51%), Gaps = 18/379 (4%)

Query: 63  TLLNACVNQRTLRG---GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ AC N     G   G++VHA+ ++        + T L+  Y K   L+ ++ +    
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSF 262

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             R++V+W  ++S+  Q     EAL     M+    EP+EFT ++VL +C+       GK
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 180 QIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++H+  +K+ + + + +VGS+L+DMY    ++   R VF+ + +R +    A+I+GY+Q 
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 239 GLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
             D+EA+ LF  + +  G+++N  T A V+ A     A    + +H  V++  +     +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY--SKHGMGREVV--ELFNLMR 353
           QN+L+DMYS+ G +  + R+F  M +R +++WN M+ GY  S+H     ++  ++ NL R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502

Query: 354 EENK------VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           + +K      +KP+S+T + +L  C+      +G  +    +  K+    ++     +VD
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI--KNNLATDVAVGSALVD 560

Query: 408 MLGRAGRVGEALEFIKNMP 426
           M  + G +  + +    +P
Sbjct: 561 MYAKCGCLQMSRKVFDQIP 579



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSL 200
           EA+  ++ M+    +P+ + F  +L + A     ELGKQIH+ + K  +    + V ++L
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           +++Y K G       VF+ + ER+ VS  ++IS        E A+E FR +  E +  + 
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199

Query: 261 VTYASVLTALSGLA---ALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            T  SV+TA S L     L  GKQVH++ LR  E+ S+++  N+L+ MY K G L  S+ 
Sbjct: 200 FTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTLVAMYGKLGKLASSKV 257

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           +  +   R +++WN +L    ++    E +E    M  E  V+PD  T  +VL  CSH
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSH 314


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/575 (42%), Positives = 367/575 (63%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL  C      + G+ +H  ++K      +Y+ T L+  Y  C  L  AR +F+ M 
Sbjct: 82  FPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG 141

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN V WT+MIS Y +     EAL L+ +M      P+E T AT++++CA      +G +
Sbjct: 142 HRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMK 201

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I + + +    +GS+L++MYAK G +  AR VF+ L ++DV + +A+I GY +   
Sbjct: 202 LHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNR 261

Query: 241 DEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EA++LFR++     M  N VT  +V++A + L  L  G+ VH ++ R +    V L N
Sbjct: 262 STEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN 321

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLIDM+SKCG +  ++R+FD+MS + +ISWN+M+ G++ HG+GRE +  F LM+  + ++
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTD-LQ 380

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD +T++ VL+ CSH G+   G  +F+EI +   G   + EHYGC+VD+L RAG + EA 
Sbjct: 381 PDEITFIGVLTACSHAGLVQEGKKLFYEI-EALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI+ MP +P  AI GS+LGACRV+ N+++GE   + L+++EP N G Y++LSN+YA   
Sbjct: 440 EFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRK 499

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W +V +VRELM EK + K PG S + +D I H+F A D SHP   E+S  ++Q+  K K
Sbjct: 500 MWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLK 559

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYV D S VL ++D+ +KE+ +  HSEKLAL +GL+ +  G  I ++KNLR+C DCH 
Sbjct: 560 LAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHT 619

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K VSK+Y R+++LRD+NRFHH  +G+CSC DYW
Sbjct: 620 LIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 182/318 (57%), Gaps = 3/318 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCA 170
           A  +F   RE +V++W +M+ A+        AL  +  ML RS   P+ FTF ++L  CA
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
               F++GK +H  ++K    S +Y+ ++LL+MYA  G +  AR +FE +  R+ V  T+
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +ISGY +     EA+ L++K++ +G   + VT A++++A + L  LG G ++HSH+   +
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +    VL ++L++MY+KCG L  +R+VFD +S++ V +W+A++ GY K+    E ++LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            +   + ++P+ VT LAV+S C+  G  + G  V   I   + G    + +   ++DM  
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMFS 328

Query: 411 RAGRVGEALEFIKNMPFE 428
           + G +  A     +M ++
Sbjct: 329 KCGDIDAAKRIFDSMSYK 346



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 299 NSLIDMYSKCGSLT--YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           N LI      GSL   Y+  VF +  E  V++WN+ML  +    M R  ++ +  M E +
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 357 KVKPDSVTYLAVLSGCS 373
           +  PD  T+ ++L GC+
Sbjct: 74  RNVPDRFTFPSLLKGCA 90


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/617 (40%), Positives = 371/617 (60%), Gaps = 30/617 (4%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNK 105
           IEM   G       +  +L A    + L+ G+++HA  +K  Y    V +   L+  Y K
Sbjct: 81  IEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGK 140

Query: 106 CECL--------------------SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           C  +                     D++ +F+   +R++VSW  MIS++SQ     EAL 
Sbjct: 141 CGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALA 200

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLLDMY 204
            F  M+    E +  T A+VL +C+     ++GK+IH+ ++++N    + +VGS+L+DMY
Sbjct: 201 FFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMY 260

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF-RKLQVEGMISNYVTY 263
               ++   R VF+ +  R +    A+ISGYA+ GLDE+A+ LF   ++V G++ N  T 
Sbjct: 261 CNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTM 320

Query: 264 ASVLTA-LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           ASV+ A +  LAA+  GK++H++ +R  + S + + ++L+DMY+KCG L  SRRVF+ M 
Sbjct: 321 ASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP 380

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREE----NKVKPDSVTYLAVLSGCSHGGME 378
            + VI+WN +++    HG G E +ELF  M  E     + KP+ VT++ V + CSH G+ 
Sbjct: 381 NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLI 440

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILGSL 437
             GL +F+ +     G EP  +HY CVVD+LGRAG++ EA E +  MP E        SL
Sbjct: 441 SEGLNLFYRMKH-DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSL 499

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGACR+H NV++GE   + L+ +EP  A +YV+LSN+Y+SAG W     VR+ M++  V 
Sbjct: 500 LGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVK 559

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+PG SWIE    +H F A D SHP  E+L   ++ LS K ++ GYVPD SCVL++VDE+
Sbjct: 560 KEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDED 619

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE +L GHSEKLA+ FG++ TP G  IRV KNLR+C DCH   KF+SK+  R++ +RD 
Sbjct: 620 EKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDV 679

Query: 618 NRFHHIVEGTCSCGDYW 634
            RFHH  EGTCSCGDYW
Sbjct: 680 RRFHHFKEGTCSCGDYW 696



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 170/351 (48%), Gaps = 36/351 (10%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+  SW   + + ++     EA++ +I M  S   P+ F F  VL + +G    + G+QI
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 182 HSLIIKSNFES---------------------HIYVGSSLLDMYAKAGRIHEARGVFECL 220
           H+  +K  + S                       +  ++L+ MYAK GR+ +++ +FE  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            +RD+VS   +IS ++Q     EA+  FR + +EG+  + VT ASVL A S L  L  GK
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 281 QVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           ++H++VLR  ++     + ++L+DMY  C  +   RRVFD++  R +  WNAM+ GY+++
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG------GMEDRGLAVFHEIVDCKD 393
           G+  + + LF  M +   + P++ T  +V+  C H       G E    A+       ++
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAI-------RN 347

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
               +I     +VDM  + G +  +      MP          L+ AC +H
Sbjct: 348 MLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMH 397



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 22/175 (12%)

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           P R   S    +    +     EAI  + ++ V G   +   + +VL A+SGL  L  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 281 QVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSL---TY-----------------SRRVFD 319
           Q+H+  ++F    S V + N+L++MY KCG +   T+                 S+ +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           +  +R ++SWN M+  +S+     E +  F LM  E  V+ D VT  +VL  CSH
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIASVLPACSH 226


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/619 (40%), Positives = 380/619 (61%), Gaps = 19/619 (3%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-C 88
           L +LC N QL +AL    EM   G+E       ++L AC +   LR G+ +HA+ +K   
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 246

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                ++ + L+  Y  C+ +   R++FD M +R +  W AMI+ YSQ  H  EAL LFI
Sbjct: 247 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 306

Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            M  S     N  T A V+ +C  +  F   + IH  ++K   +   +V ++L+DMY++ 
Sbjct: 307 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 366

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS-------- 258
           G+I  A  +F  + +RD+V+   +I+GY      E+A+ L  K+Q +E  +S        
Sbjct: 367 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 426

Query: 259 --NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N +T  ++L + + L+AL  GK++H++ ++  + + V + ++L+DMY+KCG L  SR+
Sbjct: 427 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 486

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD + ++ VI+WN +++ Y  HG G+E ++L  +M  +  VKP+ VT+++V + CSH G
Sbjct: 487 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-VKPNEVTFISVFAACSHSG 545

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILG 435
           M D GL +F+ ++    G EP  +HY CVVD+LGRAGR+ EA + +  MP +   A    
Sbjct: 546 MVDEGLRIFY-VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 604

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGA R+H N++IGE   Q L+++EP  A +YV+L+N+Y+SAG W+  T VR  MKE+ 
Sbjct: 605 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 664

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K+PG SWIE    +H F A D SHP  E+LS  ++ L  + ++ GYVPD SCVL++V+
Sbjct: 665 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 724

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           E++KE +L GHSEKLA+ FG++ T  G  IRV KNLR+C DCH   KF+SK+  R++ LR
Sbjct: 725 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 784

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH    GTCSCGDYW
Sbjct: 785 DVRRFHRFKNGTCSCGDYW 803



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 196/384 (51%), Gaps = 12/384 (3%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNKCE 107
           M  LG++     +  LL A  + + +  G+++HAH+ K  Y    V +   L+  Y KC 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
                 K+FD + ERN VSW ++IS+         AL  F  ML  + EP+ FT  +V+T
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 168 SCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +C+      G  +GKQ+H+  ++   E + ++ ++L+ MY K G++  ++ +      RD
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +V+   ++S   Q     EA+E  R++ +EG+  +  T +SVL A S L  L  GK++H+
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 239

Query: 285 HVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           + L+    +  S+V   ++L+DMY  C  +   RRVFD M +R +  WNAM+ GYS++  
Sbjct: 240 YALKNGSLDENSFV--GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 297

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            +E + LF  M E   +  +S T   V+  C   G   R  A+   +V  K G + +   
Sbjct: 298 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV--KRGLDRDRFV 355

Query: 402 YGCVVDMLGRAGRVGEALEFIKNM 425
              ++DM  R G++  A+     M
Sbjct: 356 QNTLMDMYSRLGKIDIAMRIFGKM 379



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 196/379 (51%), Gaps = 18/379 (4%)

Query: 63  TLLNACVNQRTLRG---GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ AC N     G   G++VHA+ ++        + T L+  Y K   L+ ++ +    
Sbjct: 117 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSF 175

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             R++V+W  ++S+  Q     EAL     M+    EP+EFT ++VL +C+       GK
Sbjct: 176 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 235

Query: 180 QIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++H+  +K+ + + + +VGS+L+DMY    ++   R VF+ + +R +    A+I+GY+Q 
Sbjct: 236 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 295

Query: 239 GLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
             D+EA+ LF  + +  G+++N  T A V+ A     A    + +H  V++  +     +
Sbjct: 296 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 355

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY--SKHGMGREVV--ELFNLMR 353
           QN+L+DMYS+ G +  + R+F  M +R +++WN M+ GY  S+H     ++  ++ NL R
Sbjct: 356 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 415

Query: 354 EENK------VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           + +K      +KP+S+T + +L  C+      +G  +    +  K+    ++     +VD
Sbjct: 416 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI--KNNLATDVAVGSALVD 473

Query: 408 MLGRAGRVGEALEFIKNMP 426
           M  + G +  + +    +P
Sbjct: 474 MYAKCGCLQMSRKVFDQIP 492


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/600 (40%), Positives = 363/600 (60%), Gaps = 11/600 (1%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            +A   +  LGL      +   + +C     L  G+  H       +   +++ + LI  Y
Sbjct: 1128 RAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMY 1187

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP------ 157
            +KC  L DAR +FDE+  RNVVSWT+MI+ Y Q   +  AL LF   L  +TE       
Sbjct: 1188 SKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNV 1247

Query: 158  --NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
              +     +VL++C+   G  + + +H  ++K  F+  I VG++L+D YAK G+   ++ 
Sbjct: 1248 PLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKK 1307

Query: 216  VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLA 274
            VF+ + E+D +S  ++I+ YAQ GL  EA+E+F  + +  G+  N VT ++VL A +   
Sbjct: 1308 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 1367

Query: 275  ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            AL  GK +H  V++ ++   V +  S+IDMY KCG +  +++ FD M E+ V SW AM+ 
Sbjct: 1368 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 1427

Query: 335  GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            GY  HG  +E +++F  M     VKP+ +T+++VL+ CSH G+ + G   F+ +    D 
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYD- 1485

Query: 395  FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
             EP IEHYGC+VD+ GRAG + EA   IK M  +P   + GSLLGACR+H NVD+GE   
Sbjct: 1486 IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 1545

Query: 455  QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
            Q+L E++P+N G YV+LSNLYA AGRW DV R+R LMK + + K PG S +EL   +H F
Sbjct: 1546 QKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVF 1605

Query: 515  HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
               D+ HP  E +   +++L+++ ++ GYVP+M+ VL+DVDEE+KE +L  HSEKLA+ F
Sbjct: 1606 LVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAF 1665

Query: 575  GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G++ +  G  I +IKNLR+C DCH   K +SK+  R   +RD  RFHH  +G CSCGDYW
Sbjct: 1666 GVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 199/393 (50%), Gaps = 36/393 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C N + LR   ++HA +I++       L  +LI  Y+    ++ A  +F +++   
Sbjct: 33  LLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             +W  +I A +    S +AL L+  M+      ++FTF  V+ +C      +LGK +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGR-------------------------------IHE 212
            +IK  F   ++V ++L+D Y K G                                + E
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F+ +P ++VVS TA+I+GY +    EEA+ELF+++Q E +  N  T  S++ A + 
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           +  L  G+ +H + ++  I   V L  +LIDMYSKCGS+  +  VF+ M  +++ +WN+M
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +     HG+G+E + LF+ M   N VKPD++T++ VL  C H      G A F  +    
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVN-VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ-H 387

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G  P  EHY C+ ++  R+  + EA +  K +
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 177/348 (50%), Gaps = 30/348 (8%)

Query: 90   RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
            R PV L + L  ++ K             + + NV SW ++I+  ++   S EAL  F  
Sbjct: 1085 RRPVSLSSNLATWFYK------------YVDKSNVHSWNSVIADLARGGDSVEALRAFSS 1132

Query: 150  MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
            + +    P   +F   + SC+       G+  H       FE+ ++V S+L+DMY+K G+
Sbjct: 1133 LRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ 1192

Query: 210  IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE--------GMISNYV 261
            + +AR +F+ +P R+VVS T++I+GY Q    + A+ LF+    E         +  + V
Sbjct: 1193 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252

Query: 262  TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
               SVL+A S ++  G  + VH  V++      + + N+L+D Y+KCG    S++VFD M
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 1312

Query: 322  SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             E+  ISWN+M+  Y++ G+  E +E+F+ M     V+ ++VT  AVL  C+H G    G
Sbjct: 1313 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 1372

Query: 382  LAVFHEIVDCKDGFEPEIEHYGCV----VDMLGRAGRVGEALEFIKNM 425
              +  +++      + ++E+  CV    +DM  + GRV  A +    M
Sbjct: 1373 KCIHDQVI------KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 1414



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 34/265 (12%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL+    M   G+      +  ++ AC N  ++  G+ VH  +IK  +   V++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 96  RTRLIVFYNKC-----------------------------EC--LSDARKMFDEMRERNV 124
           +  LI FY KC                              C  L +AR++FDE+  +NV
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSWTAMI+ Y +     EAL LF RM   +  PNE+T  +++ +C       LG+ IH  
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            IK+  E  +Y+G++L+DMY+K G I +A  VFE +P + + +  ++I+     GL +EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 245 IELFRKLQVEGMISNYVTYASVLTA 269
           + LF +++   +  + +T+  VL A
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCA 367



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 34/283 (12%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           F+  +QIH+ II+S   +   +   L+ +Y+  GRI  A  +F  +      +   II  
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
               GL E+A+ L++ +  +G+ ++  T+  V+ A +   ++  GK VH  ++++     
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159

Query: 295 VVLQNSLIDMYSKCG-------------------------------SLTYSRRVFDNMSE 323
           V +QN+LID Y KCG                                L  +RR+FD +  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + V+SW AM+ GY ++    E +ELF  M+ EN + P+  T ++++  C+  G+   G  
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           +    +  K+  E  +     ++DM  + G + +A+E  + MP
Sbjct: 279 IHDYAI--KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 50/338 (14%)

Query: 213  ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            A   ++ + + +V S  ++I+  A+ G   EA+  F  L+  G+I    ++   + + S 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 273  LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
            L  L  G+  H     F   + + + ++LIDMYSKCG L  +R +FD +  R V+SW +M
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 333  LVGYSKHGMGREVVELFNLMREE-------NKVKPDSVTYLAVLSGCS-----------H 374
            + GY ++      + LF    EE       N V  DSV  ++VLS CS           H
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 375  GGMEDRG----LAVFHEIVDC----------KDGF----EPEIEHYGCVVDMLGRAGRVG 416
            G +  +G    + V + ++D           K  F    E +   +  ++ +  ++G  G
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 417  EALE----FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYV 469
            EALE     ++++     A  L ++L AC     +  G+ +  ++++++ E     G  +
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 470  ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
            I  ++Y   GR E   +  + MKEK V     +SW  +
Sbjct: 1395 I--DMYCKCGRVEMAKKTFDRMKEKNV-----KSWTAM 1425



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L+ AC     L  G+ +H + IK C    VYL T LI  Y+KC  + DA ++F+ M  +
Sbjct: 262 SLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK 321

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
           ++ +W +MI++        EALNLF  M R + +P+  TF  VL +C
Sbjct: 322 SLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 368/579 (63%), Gaps = 32/579 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + TLL  C NQR    G+++HAH+I+      + + T L+  Y++C  L+ A+++F+ M 
Sbjct: 281 FTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA 340

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN  SW +MI  Y Q   + EAL LF +M  +  +P+ F+ +++L+SC      + G++
Sbjct: 341 ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 400

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPERDVVSCTAIISGYAQL 238
           +H+ I+++  E    +   L+DMYAK G +  A  V++     +R+     +I++GYA  
Sbjct: 401 LHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANK 460

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           GL +E+   F +     M+ + + Y  VLT ++                   I + +VL+
Sbjct: 461 GLKKESFNHFLE-----MLESDIEY-DVLTMVT-------------------IVNLLVLE 495

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            +L+DMYSKCG++T +R VFDNM+ + ++SWNAM+ GYSKHG  +E + L+  M ++  +
Sbjct: 496 TALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKG-M 554

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+ VT+LA+LS CSH G+ + GL +F  + +     E + EHY C+VD+LGRAGR+ +A
Sbjct: 555 YPNEVTFLAILSACSHTGLVEEGLRIFTSMQE-DYNIEAKAEHYTCMVDLLGRAGRLEDA 613

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            EF++ MP EP  +  G+LLGACRVH ++D+G    QRL E++P+N G YVI+SN+YA+A
Sbjct: 614 KEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAA 673

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GRW++V  +R++MK K V KDPG SWIE++  +  FHA  ++HP  EE+   ++ L+++ 
Sbjct: 674 GRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQS 733

Query: 539 KEAGYVPDMSCVLY---DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           K  GY+PD S +L    D+ EE++E+ LL HSE+LAL+ GLI  P+ + IRV KNLRIC 
Sbjct: 734 KGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICG 793

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   KF+SK+ GR++  RD NRFHH   G CSCGDYW
Sbjct: 794 DCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 215/386 (55%), Gaps = 9/386 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---ARKMFD 117
           Y +L+  C++  + + G+ +H  MI   Y P  YL T++++ Y +  CL D   ARK+F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           EM ERN+ +W  MI AY++     EA  +F RML+    P+ FTFA+ L  C      + 
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 193

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GKQ+HS +I   F+   +VG++L+DMYAK         VF+ + ER+ V+  +IIS  AQ
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253

Query: 238 LGLDEEAIELFRKLQ--VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            G   +A+ LF ++Q   +G+  +  T+ ++LT  +       G+Q+H+H++R  I   +
Sbjct: 254 FGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 313

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           +++  L+ MYS+CG L Y++ +F+ M+ER   SWN+M+ GY ++G  +E + LF  M + 
Sbjct: 314 IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM-QL 372

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           N +KPD  +  ++LS C       +G  + + IV  ++  E E      +VDM  + G +
Sbjct: 373 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV--RNTMEEEGILQVVLVDMYAKCGSM 430

Query: 416 GEALE-FIKNMPFEPTAAILGSLLGA 440
             A + + + +  +   A+  S+L  
Sbjct: 431 DYAWKVYDQTIKKDRNTALWNSILAG 456



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 175/375 (46%), Gaps = 43/375 (11%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE-- 212
           ++ N   +++++  C  +  F+ GK IH+ +I + +    Y+ + +L +YA++G + +  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 213 -ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR +FE +PER++ +   +I  YA++    EA  +F ++   G+  +  T+AS L    
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG 186

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L +   GKQVHS ++         + N+LIDMY+KC       +VFD M ER  ++WN+
Sbjct: 187 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 246

Query: 332 MLVGYSKHGMGREVVELFNLMRE-ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           ++   ++ G   + + LF  M+E E+ ++PD  T+  +L+ C++   +++G  +   ++ 
Sbjct: 247 IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 306

Query: 391 CKDG----FEPEIEH-------------------------YGCVVDMLGRAGRVGEALEF 421
                    E E+ H                         +  +++   + G   EAL  
Sbjct: 307 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRL 366

Query: 422 IKNMPF---EPTAAILGSLLGACRVHYNVDIG----EFVGQRLMEIEPENAGNYVILSNL 474
            K M     +P    L S+L +C    +   G     F+ +  ME   E     V+L ++
Sbjct: 367 FKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME---EEGILQVVLVDM 423

Query: 475 YASAGRWEDVTRVRE 489
           YA  G  +   +V +
Sbjct: 424 YAKCGSMDYAWKVYD 438



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 161/324 (49%), Gaps = 36/324 (11%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    +M   G++       ++L++CV+    + G+ +H  +++        L
Sbjct: 357 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 416

Query: 96  RTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           +  L+  Y KC  +  A K++D+   ++RN   W ++++ Y+ K    E+ N F+ ML S
Sbjct: 417 QVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLES 476

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           D E +  T  T+               ++ L+++          ++L+DMY+K G I +A
Sbjct: 477 DIEYDVLTMVTI---------------VNLLVLE----------TALVDMYSKCGAITKA 511

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R VF+ +  +++VS  A+ISGY++ G  +EA+ L+ ++  +GM  N VT+ ++L+A S  
Sbjct: 512 RTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHT 571

Query: 274 AALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNA 331
             +  G ++ + +   + I +       ++D+  + G L  ++   + M  E  V +W A
Sbjct: 572 GLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGA 631

Query: 332 MLVGYSKH---GMGREVVE-LFNL 351
           +L     H    MGR   + LF L
Sbjct: 632 LLGACRVHKDMDMGRLAAQRLFEL 655


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/575 (41%), Positives = 355/575 (61%), Gaps = 8/575 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+  C+ +  ++  + VH H+    Y P  +L   LI  Y K   L +AR +FDEM 
Sbjct: 19  YSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMP 78

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RNVVSWT MISAYS    + +AL+  I MLR    PN +T+++VL +C G       +Q
Sbjct: 79  DRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQ 135

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  I+K   ES ++V S+L+D Y+K G  H+A  VF  +   D+V   +II G+AQ   
Sbjct: 136 LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSD 195

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E + L+++++    +++  T  SVL A +GLA L  G+QVH HVL+++    ++L N+
Sbjct: 196 GDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILNNA 253

Query: 301 LIDMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           L+DMY KCGSL  +  +F  M +E+ VISW+ M+ G +++G   + ++LF  M+ +   K
Sbjct: 254 LLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGP-K 312

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +T L VL  CSH G+ + G   F  + +   G +P  EHYGC++D+LGRAG++ EA+
Sbjct: 313 PNYITILGVLFACSHAGLVNDGWYYFQSMKE-HFGIDPGREHYGCIIDLLGRAGKLDEAV 371

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I  M  EP A     LLGACRVH NVD+  +  + +++++P +AG Y++LSN+YA++ 
Sbjct: 372 KLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQ 431

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WEDV  VR  M+ + V KDPG SWIE+ + +H F   D SHP  EE+  ++ QL  +  
Sbjct: 432 KWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLM 491

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD + VL D++ EQ E  L  HSEKLA+ FGL+  P    I + KNLRIC DCH 
Sbjct: 492 RLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHI 551

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           FAK VS++  R + +RD  R+HH   G CSCGDYW
Sbjct: 552 FAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 180/358 (50%), Gaps = 18/358 (5%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R+    +  T++ ++  C      +  + +H  +  + +E   ++ ++L++MY K G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + EAR +F+ +P+R+VVS T +IS Y+   L+ +A++    +  EG+  N  TY+SVL A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
             GL  L   +Q+H  +L+  + S V ++++LID YSK G    +  VF+ M    ++ W
Sbjct: 127 CDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVW 183

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ G++++  G E + L+  M+  + V  D  T  +VL  C+   + + G  V   ++
Sbjct: 184 NSIIGGFAQNSDGDETLHLYKRMKRADFV-ADQSTLTSVLRACTGLALLELGRQVHVHVL 242

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEA-LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                ++ ++     ++DM  + G + +A L F + M  +   +    + G  +  ++ D
Sbjct: 243 K----YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSAD 298

Query: 449 -IGEFVGQRLMEIEPENAGNYV-ILSNLYA--SAGRWEDVTRVRELMKEKAVTKDPGR 502
            +  F   +    +P    NY+ IL  L+A   AG   D     + MKE     DPGR
Sbjct: 299 ALKLFEAMKSKGPKP----NYITILGVLFACSHAGLVNDGWYYFQSMKEH-FGIDPGR 351


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/671 (37%), Positives = 382/671 (56%), Gaps = 42/671 (6%)

Query: 3   RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLK-------TLCSNGQLTKALIEMATLGLE 55
           +P   S  F   TF +      +  P+  N K        LC   +L +AL  +  +  +
Sbjct: 9   KPSHSSSPFQPKTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQID-K 67

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM 115
                Y TL+ +C+  R L+ G++VH H+  + + P +++  RL+  Y KC+ L D++K+
Sbjct: 68  PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127

Query: 116 FDEMRERNV-------------------------------VSWTAMISAYSQKAHSFEAL 144
           FDEM ER++                                SWTAMIS Y +     EAL
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEAL 187

Query: 145 NLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
            LF  M RSD ++ N+FT ++ L + A      +GK+IH  I+++  +S   V S+L DM
Sbjct: 188 ELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDM 247

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y K G I EAR +F+ + +RD+V+ TA+I  Y Q G  +E  +LF  L   G+  N  T+
Sbjct: 248 YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           + VL A +   +   GK+VH ++ R     +    ++L+ MYSKCG++  + RVF    +
Sbjct: 308 SGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQ 367

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
             + SW +++ GY+++G   E +  F L+ +    +PD +T++ VLS C+H G+ D+GL 
Sbjct: 368 PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG-TQPDHITFVGVLSACAHAGLVDKGLD 426

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            FH I + + G     +HY C++D+L R+G+  EA   I  M  +P   +  SLLG CR+
Sbjct: 427 YFHSIKE-QYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRI 485

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H N+ + +   + L EIEPEN   YV L+N+YA+AG W +V ++R+ M ++ V K PG S
Sbjct: 486 HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLS 545

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           WI + + +H F   D SHP  +E++  + +LS + KE G+VPD + VL+DV++EQKE+ L
Sbjct: 546 WIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNL 605

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ FG+I TPEG PI+V KNLR CVDCH   KF+SK+  RK+ +RD NRFH  
Sbjct: 606 SYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFF 665

Query: 624 VEGTCSCGDYW 634
            +G CSC DYW
Sbjct: 666 EDGHCSCRDYW 676


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/600 (40%), Positives = 363/600 (60%), Gaps = 11/600 (1%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            +A   +  LGL      +   + +C     L  G+  H       +   +++ + LI  Y
Sbjct: 2001 RAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMY 2060

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE---- 159
            +KC  L DAR +FDE+  RNVVSWT+MI+ Y Q   +  AL LF   L  +TE  +    
Sbjct: 2061 SKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNV 2120

Query: 160  ----FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
                    +VL++C+   G  + + +H  ++K  F+  I VG++L+D YAK G+   ++ 
Sbjct: 2121 PLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKK 2180

Query: 216  VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLA 274
            VF+ + E+D +S  ++I+ YAQ GL  EA+E+F  + +  G+  N VT ++VL A +   
Sbjct: 2181 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 2240

Query: 275  ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            AL  GK +H  V++ ++   V +  S+IDMY KCG +  +++ FD M E+ V SW AM+ 
Sbjct: 2241 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 2300

Query: 335  GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            GY  HG  +E +++F  M     VKP+ +T+++VL+ CSH G+ + G   F+ +    D 
Sbjct: 2301 GYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYD- 2358

Query: 395  FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
             EP IEHYGC+VD+ GRAG + EA   IK M  +P   + GSLLGACR+H NVD+GE   
Sbjct: 2359 IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 2418

Query: 455  QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
            Q+L E++P+N G YV+LSNLYA AGRW DV R+R LMK + + K PG S +EL   +H F
Sbjct: 2419 QKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVF 2478

Query: 515  HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
               D+ HP  E +   +++L+++ ++ GYVP+M+ VL+DVDEE+KE +L  HSEKLA+ F
Sbjct: 2479 LVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAF 2538

Query: 575  GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G++ +  G  I +IKNLR+C DCH   K +SK+  R   +RD  RFHH  +G CSCGDYW
Sbjct: 2539 GVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 199/393 (50%), Gaps = 36/393 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C N + LR   ++HA +I++       L  +LI  Y+    ++ A  +F +++   
Sbjct: 33  LLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             +W  +I A +    S +AL L+  M+      ++FTF  V+ +C      +LGK +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGR-------------------------------IHE 212
            +IK  F   ++V ++L+D Y K G                                + E
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F+ +P ++VVS TA+I+GY +    EEA+ELF+++Q E +  N  T  S++ A + 
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           +  L  G+ +H + ++  I   V L  +LIDMYSKCGS+  +  VF+ M  +++ +WN+M
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +     HG+G+E + LF+ M   N VKPD++T++ VL  C H      G A F  +    
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVN-VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ-H 387

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G  P  EHY C+ ++  R+  + EA +  K +
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 163/305 (53%), Gaps = 18/305 (5%)

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            NV SW ++I+  ++   S EAL  F  + +    P   +F   + SC+       G+  H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                   FE+ ++V S+L+DMY+K G++ +AR +F+ +P R+VVS T++I+GY Q    +
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 243  EAIELFRKLQVE--------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
             A+ LF+    E         +  + V   SVL+A S ++  G  + VH  V++      
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 295  VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            + + N+L+D Y+KCG    S++VFD M E+  ISWN+M+  Y++ G+  E +E+F+ M  
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 355  ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV----VDMLG 410
               V+ ++VT  AVL  C+H G    G  +  +++      + ++E+  CV    +DM  
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI------KMDLEYNVCVGTSIIDMYC 2272

Query: 411  RAGRV 415
            + GRV
Sbjct: 2273 KCGRV 2277



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 34/275 (12%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL+    M   G+      +  ++ AC N  ++  G+ VH  +IK  +   V++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFV 162

Query: 96  RTRLIVFYNKC-----------------------------EC--LSDARKMFDEMRERNV 124
           +  LI FY KC                              C  L +AR++FDE+  +NV
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSWTAMI+ Y +     EAL LF RM   +  PNE+T  +++ +C       LG+ IH  
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            IK+  E  +Y+G++L+DMY+K G I +A  VFE +P + + +  ++I+     GL +EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           + LF +++   +  + +T+  VL A   +  +  G
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 35/302 (11%)

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
            F+  +QIH+ II+S   +   +   L+ +Y+  GRI  A  +F  +      +   II 
Sbjct: 39  NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
                GL E+A+ L++ +  +G+ ++  T+  V+ A +   ++  GK VH  ++++    
Sbjct: 99  ANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSG 158

Query: 294 YVVLQNSLIDMYSKCG-------------------------------SLTYSRRVFDNMS 322
            V +QN+LID Y KCG                                L  +RR+FD + 
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + V+SW AM+ GY ++    E +ELF  M+ EN + P+  T ++++  C+  G+   G 
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGILTLGR 277

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +    +  K+  E  +     ++DM  + G + +A+E  + MP   +     S++ +  
Sbjct: 278 GIHDYAI--KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLG 334

Query: 443 VH 444
           VH
Sbjct: 335 VH 336



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 50/338 (14%)

Query: 213  ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            A   ++ + + +V S  ++I+  A+ G   EA+  F  L+  G+I    ++   + + S 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 273  LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
            L  L  G+  H     F   + + + ++LIDMYSKCG L  +R +FD +  R V+SW +M
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 333  LVGYSKHGMGREVVELFNLMREE-------NKVKPDSVTYLAVLSGCS-----------H 374
            + GY ++      + LF    EE       N V  DSV  ++VLS CS           H
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 375  GGMEDRG----LAVFHEIVDC----------KDGF----EPEIEHYGCVVDMLGRAGRVG 416
            G +  +G    + V + ++D           K  F    E +   +  ++ +  ++G  G
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 417  EALE----FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYV 469
            EALE     ++++     A  L ++L AC     +  G+ +  ++++++ E     G  +
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 470  ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
            I  ++Y   GR E   +  + MKEK V     +SW  +
Sbjct: 2268 I--DMYCKCGRVEMAKKTFDRMKEKNV-----KSWTAM 2298


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/575 (42%), Positives = 366/575 (63%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL  C      + G+ +H  ++K      +Y+ T L+  Y  C  L  AR +F+ M 
Sbjct: 82  FPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG 141

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN V WT+MIS Y +     EAL L+ +M      P+E T AT++++CA      +G +
Sbjct: 142 HRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMK 201

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I + + +    +GS+L++MYAK G +  AR VF+ L ++DV + +A+I GY +   
Sbjct: 202 LHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNR 261

Query: 241 DEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EA++LFR++     M  N VT  +V++A + L  L  G+ VH ++ R +    V L N
Sbjct: 262 STEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN 321

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLIDM+SKCG +  ++R+FD+MS + +ISWN+M+ G + HG+GRE +  F+LM+  + ++
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTD-LQ 380

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD +T++ VL+ CSH G+   G  +F+EI +   G   + EHYGC+VD+L RAG + EA 
Sbjct: 381 PDEITFIGVLTACSHAGLVQEGKKLFYEI-EALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI+ MP +P  AI GS+LGACRV+ N+++GE   + L+E+EP N G Y++LSN+YA   
Sbjct: 440 EFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRK 499

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W +V +VRELM EK + K PG S + +D I H+F A D SHP   E+S  ++Q+  K K
Sbjct: 500 MWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLK 559

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYV D S VL ++D+ +KE+ +  HSEKLAL +GL+ +  G  I ++KNLR+C DCH 
Sbjct: 560 LVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHT 619

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K VSK+Y R+++LRD+NRFHH  +G+CSC DYW
Sbjct: 620 LIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 181/318 (56%), Gaps = 3/318 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCA 170
           A  +F   R  +V++W +M+ A+        AL  +  ML RS   P+ FTF ++L  CA
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
               F++GK +H  ++K    S +Y+ ++LL+MYA  G +  AR +FE +  R+ V  T+
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +ISGY +     EA+ L++K++ +G   + VT A++++A + L  LG G ++HSH+   +
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +    VL ++L++MY+KCG L  +R+VFD +S++ V +W+A++ GY K+    E ++LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            +   + ++P+ VT LAV+S C+  G  + G  V   I   + G    + +   ++DM  
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN--SLIDMFS 328

Query: 411 RAGRVGEALEFIKNMPFE 428
           + G +  A     +M ++
Sbjct: 329 KCGDIDAAKRIFDSMSYK 346



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 299 NSLIDMYSKCGSLT--YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           N LI      GSL   Y+  VF +     V++WN+ML  +    M R  ++ +  M E +
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 357 KVKPDSVTYLAVLSGCS 373
           +  PD  T+ ++L GC+
Sbjct: 74  RNVPDRFTFPSLLKGCA 90


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 370/601 (61%), Gaps = 32/601 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + ++L AC +   LR G+ +HA+ ++T       ++ + L+  Y  C  +   R +FD +
Sbjct: 219 FASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV 278

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF----GF 175
            +R +  W AMI+ Y+Q  H  +AL LFI M   +     ++ AT ++S   A+    G 
Sbjct: 279 LDRKIGLWNAMIAGYAQSEHDEKALMLFIEM---EAAAGLYSNATTMSSIVPAYVRCEGI 335

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
              + IH  +IK   E++ Y+ ++L+DMY++ G I  ++ +F+ + +RD+VS   II+ Y
Sbjct: 336 SRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSY 395

Query: 236 AQLGLDEEAIELFRKLQVEGMISNY----------------VTYASVLTALSGLAALGHG 279
              G   +A+ L  ++Q     S Y                +T  +VL   + L+AL  G
Sbjct: 396 VICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKG 455

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K++H++ +R  + S V + ++L+DMY+KCG L  +RRVFD M  R VI+WN +++ Y  H
Sbjct: 456 KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMH 515

Query: 340 GMGREVVELFNLMREEN----KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           G G+E +ELF  M  E     +VKP  VT++A+ + CSH GM D GL++FH++ + + G 
Sbjct: 516 GKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKN-EHGI 574

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAILGSLLGACRVHYNVDIGEFV 453
           EP  +HY C+VD++GRAG+V EA   +  MP  F+   A   SLLGACR+++N++IGE  
Sbjct: 575 EPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGA-WSSLLGACRIYHNIEIGEIA 633

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            + L++++P+ A +YV+LSN+Y+SAG W+    +R  MK   V K+PG SWIE    +H 
Sbjct: 634 AENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHK 693

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D SHP  E+L   ++ LS + K+ GYVPD +CVL+D+DEE+KE +L GHSEKLA+ 
Sbjct: 694 FLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIA 753

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FG++ TP G  IRV KNLR+C DCH  +KF+SK+  R++ LRD  RFHH  +GTCSCGDY
Sbjct: 754 FGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDY 813

Query: 634 W 634
           W
Sbjct: 814 W 814



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 185/371 (49%), Gaps = 9/371 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMFDE 118
           +  +L A    + L  G+++HAH+ K  Y     V +   L+  Y KC  L DA K+FD 
Sbjct: 13  FPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDR 72

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF---GF 175
           + ER+ VSW ++ISA  +      A+  F  ML    EP+ FT  ++  +C+      G 
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGL 132

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LGKQIH    +       +  ++L+ MYAK GR+ +A+ +     +RD+V+  ++IS +
Sbjct: 133 WLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSF 191

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSY 294
           +Q     EA+   R + +EG+  + VT+ASVL A S L  L  GK++H++ LR  ++   
Sbjct: 192 SQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIEN 251

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
             + ++L+DMY  CG +   R VFD++ +R +  WNAM+ GY++     + + LF  M  
Sbjct: 252 SFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEA 311

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              +  ++ T  +++          R   +   ++  K G E        ++DM  R G 
Sbjct: 312 AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVI--KRGLETNRYLQNALIDMYSRMGD 369

Query: 415 VGEALEFIKNM 425
           +  +     +M
Sbjct: 370 IKTSKRIFDSM 380



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 171/370 (46%), Gaps = 43/370 (11%)

Query: 46  LIEM-ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
            IEM A  GL        +++ A V    +   + +H ++IK       YL+  LI  Y+
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYS 365

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT--------- 155
           +   +  ++++FD M +R++VSW  +I++Y     S +AL L   M R +          
Sbjct: 366 RMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYN 425

Query: 156 -------EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
                  +PN  T  TVL  CA       GK+IH+  I++   S + VGS+L+DMYAK G
Sbjct: 426 DEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCG 485

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            ++ AR VF+ +P R+V++   II  Y   G  +E++ELF  +  EG     V    V T
Sbjct: 486 CLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEV-T 544

Query: 269 ALSGLAALGHGKQVHS-----HVLRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
            ++  A+  H   V       H ++ E      P +      ++D+  + G +  +  + 
Sbjct: 545 FIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYA---CIVDLVGRAGKVEEAYGLV 601

Query: 319 DNMSE--RTVISWNAMLVG---YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC- 372
           + M      V +W+++L     Y    +G    E  NL+    +++PD  ++  +LS   
Sbjct: 602 NTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAE--NLL----QLQPDVASHYVLLSNIY 655

Query: 373 SHGGMEDRGL 382
           S  G+ D+ +
Sbjct: 656 SSAGLWDKAM 665



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--SHIYVGSSLLDMYAKA 207
           M+ S   P+ F F  VL + AG     LGKQIH+ + K  +   S + + ++L++MY K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G + +A  VF+ + ERD VS  +IIS   +    E AI+ FR + +EG   +  T  S+ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 268 TALSGL---AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            A S L     L  GKQ+H    R +        N+L+ MY+K G L  ++ +     +R
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFR-KGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            +++WN+M+  +S++    E +    LM  E  VKPD VT+ +VL  CSH
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEG-VKPDGVTFASVLPACSH 228


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 354/572 (61%), Gaps = 3/572 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA-RKMFDEMRER 122
           ++ AC     L  GQ +H    K      V++   LI  Y KC  + +A +++FD M  +
Sbjct: 214 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTK 273

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            V SW A++  Y+Q +   +AL+L+++M  S  +P+ FT  ++L +C+       G++IH
Sbjct: 274 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 333

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +++      ++G SLL +Y   G+   A+ +F+ +  R +VS   +I+GY+Q GL +
Sbjct: 334 GFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPD 393

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI LFR++  +G+    +    V  A S L+AL  GK++H   L+  +   + + +S+I
Sbjct: 394 EAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSII 453

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+K G +  S+R+FD + E+ V SWN ++ GY  HG G+E +ELF  M     +KPD 
Sbjct: 454 DMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG-LKPDD 512

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+  +L  CSH G+ + GL  F+++++  +  EP++EHY CVVDMLGRAGR+ +AL  I
Sbjct: 513 FTFTGILMACSHAGLVEDGLEYFNQMLNLHN-IEPKLEHYTCVVDMLGRAGRIDDALRLI 571

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + MP +P + I  SLL +CR+H N+ +GE V  +L+E+EPE   NYV++SNL+A +G+W+
Sbjct: 572 EEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWD 631

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV RVR  MK+  + KD G SWIE+   +H F   D   P  EE+    ++L VK    G
Sbjct: 632 DVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIG 691

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y PD   VL+D++EE K  +L GHSEKLA++FGL+ T +G P+RV KNLRIC DCHN AK
Sbjct: 692 YTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAK 751

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SKV  R + +RD  RFHH  +G CSCGDYW
Sbjct: 752 FISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 257/529 (48%), Gaps = 48/529 (9%)

Query: 7   QSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKAL------IEMATLGLEMRFEE 60
           Q+R   SL+F     T   F  +   +K LC +G L +AL       +   L    R E 
Sbjct: 50  QTRQTKSLSFANSS-TNRQFS-SLHEIKKLCESGNLKEALDFLQRESDDVVLDSAQRSEA 107

Query: 61  YDTLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
              LL AC  ++ +  G+R+H  +   T +     L TR+I  Y+ C   SD+R +FD++
Sbjct: 108 MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 167

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELG 178
           R +N+  W A++SAY++     +A+++F  ++  ++ +P+ FT   V+ +CAG     LG
Sbjct: 168 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA-RGVFECLPERDVVSCTAIISGYAQ 237
           + IH +  K +  S ++VG++L+ MY K G + EA + VF+ +  + V S  A++ GYAQ
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                +A++L+ ++   G+  ++ T  S+L A S + +L +G+++H   LR  +     +
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             SL+ +Y  CG    ++ +FD M  R+++SWN M+ GYS++G+  E + LF  M  +  
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG- 406

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRG---------------LAVFHEIVD--CKDGF----- 395
           ++P  +  + V   CS       G               + V   I+D   K G      
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 466

Query: 396 -------EPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHY 445
                  E ++  +  ++   G  GR  EALE  + M     +P       +L AC    
Sbjct: 467 RIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 526

Query: 446 NVDIG-EFVGQ--RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
            V+ G E+  Q   L  IEP+   +Y  + ++   AGR +D  R+ E M
Sbjct: 527 LVEDGLEYFNQMLNLHNIEPK-LEHYTCVVDMLGRAGRIDDALRLIEEM 574



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 173/361 (47%), Gaps = 20/361 (5%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           N    KAL   ++M   GL+  +    +LL AC   ++L  G+ +H   ++       ++
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y  C     A+ +FD M  R++VSW  MI+ YSQ     EA+NLF +ML    
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 407

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P E     V  +C+      LGK++H   +K++    I+V SS++DMYAK G I  ++ 
Sbjct: 408 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQR 467

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ L E+DV S   II+GY   G  +EA+ELF K+   G+  +  T+  +L A S    
Sbjct: 468 IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGL 527

Query: 276 LGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNAML 333
           +  G +  + +L    I   +     ++DM  + G +  + R+ + M  +     W+++L
Sbjct: 528 VEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLL 587

Query: 334 VGYSKH---GMGREVVELFNLMREENKVKPDSVTYLAVLSGCS---------HGGMEDRG 381
                H   G+G +V    N + E    KP++   ++ L   S          G M+D G
Sbjct: 588 SSCRIHGNLGLGEKVA---NKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIG 644

Query: 382 L 382
           L
Sbjct: 645 L 645


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/621 (39%), Positives = 375/621 (60%), Gaps = 35/621 (5%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY-- 103
            + M   G+E     +  LL +C    +   G+++HAH++K  +   V++ T LI  Y  
Sbjct: 117 FVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQ 176

Query: 104 ----NKCECLSD-------------------------ARKMFDEMRERNVVSWTAMISAY 134
               N  + + D                         AR++FDEM  ++VVSW AMI+ Y
Sbjct: 177 SGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGY 236

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +Q   S EAL LF  M +++  PNE T  +VL++CA +   +LG  + S I      S++
Sbjct: 237 AQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNL 296

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
            + ++L+DMY+K G +  AR +F+ + ERDV+S   +I GY  +   +EA+ LFR++   
Sbjct: 297 KLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLAS 356

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+    +T+ S+L + + L A+  GK +H+++ +        L  SLID+Y+KCG++  +
Sbjct: 357 GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAA 416

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R+VFD M  +++ SWNAM+ G + HG   +  ELF+ M  +  ++P+ +T++ +LS C H
Sbjct: 417 RQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDG-IEPNEITFVGILSACKH 475

Query: 375 GGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
            G+ D G   F  +V D K    P+ +HYGC++D+LGRAG   EA   ++NM  +P  AI
Sbjct: 476 AGLVDLGQQFFSSMVQDYK--ISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAI 533

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            GSLLGACR H  V++GE V +RL E+EP+N G YV+LSN+YA AG+W+DV R+R  + +
Sbjct: 534 WGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLND 593

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           + + K PG + IE+D ++H F   D+ HP  E++   ++++  + K  G+V D S VLYD
Sbjct: 594 RGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYD 653

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           +DEE KE  L  HSEKLA+ FGLI T  G PIR+IKNLR+C +CH+  K +SK++ R++ 
Sbjct: 654 MDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREII 713

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
            RD+NRFHH  +G+CSC DYW
Sbjct: 714 ARDRNRFHHFKDGSCSCNDYW 734



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +CS  +      EM   G+E     + ++L +C +   +  G+ +HA++ K        L
Sbjct: 340 MCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSL 399

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T LI  Y KC  +  AR++FD M+ +++ SW AMI   +    + +A  LF +M     
Sbjct: 400 STSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGI 459

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLII---KSNFESHIYVGSSLLDMYAKAGRIHE 212
           EPNE TF  +L++C  A   +LG+Q  S ++   K + +S  Y    ++D+  +AG   E
Sbjct: 460 EPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHY--GCMIDLLGRAGLFEE 517

Query: 213 ARGVFE 218
           A  + +
Sbjct: 518 AESLLQ 523



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM--YSKCGSLTYSRRVFDNMSER 324
           L  LS   ++   KQ+H+H+++  + + +   + LI+    S+ G ++Y+  +F+++ E 
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            +  WN+M+ G S   +   +  +F +    + V+P+S T+  +L  C+       G  +
Sbjct: 93  NLFIWNSMIRGLSM-SLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
              ++  K GF  ++  +  +++M  ++G +  A
Sbjct: 152 HAHVL--KLGFVSDVFIHTSLINMYAQSGEMNNA 183


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/605 (40%), Positives = 370/605 (61%), Gaps = 11/605 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           + +  +A   M  L L      +   + AC +   +  G++ H       Y+  +++ + 
Sbjct: 57  SAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSA 116

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LIV Y+ C  L DARK+FDE+ +RN+VSWT+MI  Y    ++ +A++LF  +L  + + +
Sbjct: 117 LIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDD 176

Query: 159 EFTF------ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR--I 210
              F       +V+++C+      L + IHS +IK  F+  + VG++LLD YAK G   +
Sbjct: 177 ATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGV 236

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTA 269
             AR +F+ + ++D VS  +I+S YAQ G+  EA ++FR+L  E +++ N +T ++VL A
Sbjct: 237 AVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLA 296

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
           +S   AL  GK +H  V+R  +   V++  S+IDMY KCG +  +R  FD M  + V SW
Sbjct: 297 VSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSW 356

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            AM+ GY  HG   + +ELF  M +   V+P+ +T+++VL+ CSH G+ D G   F+ + 
Sbjct: 357 TAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGLHDVGWHWFNAM- 414

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             + G EP +EHYGC+VD+LGRAG + +A + I+ M  EP + I  SLL ACR+H NV++
Sbjct: 415 KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVEL 474

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
            E    RL E++P N G Y++LS++YA +GRW+DV RVR  MK + + K PG S +EL+ 
Sbjct: 475 AEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNG 534

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F   D  HP RE++   + +L+ K  EAGYV + S V +DVDEE+KE  L  HSEK
Sbjct: 535 EVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEK 594

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FG++ T  G+ + V+KNLR+C DCHN  K +SK+  R+  +RD  RFHH  +G CS
Sbjct: 595 LAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCS 654

Query: 630 CGDYW 634
           CGDYW
Sbjct: 655 CGDYW 659



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 162/304 (53%), Gaps = 10/304 (3%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V SW ++I+  ++   S EAL  F  M +    P   +F   + +C+       GKQ H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                  ++S I+V S+L+ MY+  G++ +AR VF+ +P+R++VS T++I GY   G   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 243 EAIELFRKLQVE------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +A+ LF+ L +E       M  + +   SV++A S +AA G  + +HS V++      V 
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVS 219

Query: 297 LQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + N+L+D Y+K   G +  +R++FD + ++  +S+N+++  Y++ GM  E  ++F  + +
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIK 279

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  V  + +T   VL   SH G    G  +  +++  + G E ++     ++DM  + GR
Sbjct: 280 EKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVI--RMGLEDDVIVGTSIIDMYCKCGR 337

Query: 415 VGEA 418
           V  A
Sbjct: 338 VETA 341


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 361/572 (63%), Gaps = 4/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+ACV       G+++H+ +I++     V++   L+  Y K   + ++RK+F+ M   
Sbjct: 253 SLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH 312

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+SWTA+IS Y Q     EA+ LF  ML     PN FTF++VL +CA    F +GKQ+H
Sbjct: 313 NVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLH 372

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              IK    +   VG+SL++MYA++G +  AR  F  L E++++S        A+    +
Sbjct: 373 GQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSD 432

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E+     +++  G+ ++  TYA +L+  + +  +  G+Q+H+ +++    + + + N+LI
Sbjct: 433 ESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALI 490

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MYSKCG+   + +VF++M  R VI+W +++ G++KHG   + +ELF  M E   VKP+ 
Sbjct: 491 SMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIG-VKPNE 549

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VTY+AVLS CSH G+ D     F+ +        P +EHY C+VD+LGR+G + EA+EFI
Sbjct: 550 VTYIAVLSACSHVGLIDEAWKHFNSM-HYNHSISPRMEHYACMVDLLGRSGLLLEAIEFI 608

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            +MPF+  A +  + LG+CRVH N  +GE   ++++E EP +   Y++LSNLYAS GRW+
Sbjct: 609 NSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWD 668

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV  +R+ MK+K + K+ G SWIE+D  +H FH  D SHP   ++  ++ +L++K K  G
Sbjct: 669 DVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLG 728

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y+P+   VL+DV++EQKE+ L  HSEK+A+ + LI TP+  PIRV KNLR+C DCH   K
Sbjct: 729 YIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIK 788

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++S V GR++ +RD NRFHHI +G CSC DYW
Sbjct: 789 YISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 200/369 (54%), Gaps = 7/369 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCEC-LSDARKMFDE 118
           +  LL +C N      G  + A ++KT Y    V +   LI  + K    +  AR +FD+
Sbjct: 148 FTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDK 207

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M+ +N+V+WT MI+ YSQ     +A++LF R+L S+  P++FT  ++L++C     F LG
Sbjct: 208 MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLG 267

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           KQ+HS +I+S   S ++VG +L+DMYAK+  +  +R +F  +   +V+S TA+ISGY Q 
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQS 327

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             ++EAI+LF  +    +  N  T++SVL A + L   G GKQ+H   ++  + +   + 
Sbjct: 328 RQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVG 387

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSLI+MY++ G++  +R+ F+ + E+ +IS+N      +K     +  E FN   E   V
Sbjct: 388 NSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK---ALDSDESFNHEVEHTGV 444

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
                TY  +LSG +  G   +G  +   IV  K GF   +     ++ M  + G    A
Sbjct: 445 GASPFTYACLLSGAACIGTIVKGEQIHALIV--KSGFGTNLCINNALISMYSKCGNKEAA 502

Query: 419 LEFIKNMPF 427
           L+   +M +
Sbjct: 503 LQVFNDMGY 511



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 182/327 (55%), Gaps = 10/327 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RE 121
           LL AC+    L  G+ +H  +I +       L   LI  Y+KC    +A  +F  M   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRML---RSDTEPNEFTFATVLTSCAGAFGFELG 178
           R++VSW+A+IS ++  +    AL  F+ ML   R+   PNE+ F  +L SC+    F  G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 179 KQIHSLIIKSN-FESHIYVGSSLLDMYAKAG-RIHEARGVFECLPERDVVSCTAIISGYA 236
             I + ++K+  F+SH+ VG +L+DM+ K G  I  AR VF+ +  +++V+ T +I+ Y+
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           QLGL ++A++LF +L V     +  T  S+L+A   L     GKQ+HS V+R  + S V 
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +  +L+DMY+K  ++  SR++F+ M    V+SW A++ GY +    +E ++LF  M    
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNML-HG 343

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLA 383
            V P+  T+ +VL  C+   + D G+ 
Sbjct: 344 HVTPNCFTFSSVLKACA--SLPDFGIG 368



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
           FE+L   I  L   T       + +L +C  +   ELGK +H  +I S       + +SL
Sbjct: 21  FESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSL 80

Query: 201 LDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELF-RKLQVEGMI 257
           + +Y+K G    A  +F  +   +RD+VS +AIIS +A   ++  A+  F   LQ    I
Sbjct: 81  ITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNI 140

Query: 258 --SNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCG-SLTY 313
              N   + ++L + S       G  + + +L+     S+V +  +LIDM++K G  +  
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQS 200

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGC 372
           +R VFD M  + +++W  M+  YS+ G+  + V+LF  L+  E    PD  T  ++LS C
Sbjct: 201 ARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSE--YTPDKFTLTSLLSAC 258

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDMLGRAGRVGEALEFIKNM 425
                   G  +   ++  + G   ++   GC +VDM  ++  V  + +    M
Sbjct: 259 VELEFFSLGKQLHSWVI--RSGLASDV-FVGCTLVDMYAKSAAVENSRKIFNTM 309



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL+      T+  G+++HA ++K+ +   + +   LI  Y+KC     A ++F++M 
Sbjct: 451 YACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMG 510

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF--ELG 178
            RNV++WT++IS +++   + +AL LF  ML    +PNE T+  VL++C+   G   E  
Sbjct: 511 YRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHV-GLIDEAW 569

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           K  +S+    +    +   + ++D+  ++G + EA      +P
Sbjct: 570 KHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMP 612


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/612 (39%), Positives = 376/612 (61%), Gaps = 31/612 (5%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G E+    + T+L   V+      G  +HA + K  +    ++ T LI  Y+ C  +  A
Sbjct: 134 GHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVA 193

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD +  +++VSWT M++ +++     EAL LF +M     +PN FTFA+V  +C G 
Sbjct: 194 REVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGL 253

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F++GK +H   +KS +E  +YVG +LLD+Y K+G I +AR  FE +P++DV+  + +I
Sbjct: 254 EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMI 313

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + YAQ    +EA+E+F +++   ++ N  T+ASVL A + +  L  G Q+H HV++  + 
Sbjct: 314 ARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLH 373

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           S V + N+L+D+Y+KCG +  S  +F     R  ++WN ++VG+ + G G + + LF  M
Sbjct: 374 SDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNM 433

Query: 353 REEN------------------------------KVKPDSVTYLAVLSGCSHGGMEDRGL 382
            E                                 VKPD +T++ VLS C++ G+ D+G 
Sbjct: 434 LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQ 493

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           A F  ++    G EP IEHY C+V +LGR G + +A++ I  +PF+P+  +  +LLGAC 
Sbjct: 494 AYFTSMIQ-DHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 552

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H ++++G    QR++E+EP++   +V+LSN+YA+A RW++V  VR+ MK K V K+PG 
Sbjct: 553 IHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGL 612

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIE    +H+F   D SHP    ++  ++ L +K K+AGY+P+ + VL DV++E+KE++
Sbjct: 613 SWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERL 672

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           L  HSE+LAL+FG+I TP G+PIR++KNLRICVDCH   K +SKV  R++ +RD NRFHH
Sbjct: 673 LWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHH 732

Query: 623 IVEGTCSCGDYW 634
             EG CSCGDYW
Sbjct: 733 FQEGLCSCGDYW 744



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 199/374 (53%), Gaps = 7/374 (1%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           E     Y   L  C+ +     G+ +H  ++K      ++    L+  Y K + L DA K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM ERN +S+  +I  Y++     EA+ LF+R+ R   E N F F T+L        
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            ELG  IH+ I K   ES+ +VG++L+D Y+  GR+  AR VF+ +  +D+VS T +++ 
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL--RFEIP 292
           +A+    +EA++LF ++++ G   N  T+ASV  A  GL A   GK VH   L  R+E+ 
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
            YV +  +L+D+Y+K G +  +RR F+ + ++ VI W+ M+  Y++    +E VE+F  M
Sbjct: 275 LYVGV--ALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           R+   V P+  T+ +VL  C+     + G  +   ++  K G   ++     ++D+  + 
Sbjct: 333 RQA-LVLPNQFTFASVLQACATMEGLNLGNQIHCHVI--KIGLHSDVFVSNALMDVYAKC 389

Query: 413 GRVGEALEFIKNMP 426
           GR+  ++E     P
Sbjct: 390 GRMENSMELFAESP 403



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 136/276 (49%), Gaps = 7/276 (2%)

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S +E N   +A  L  C        GK +H  I+K      ++  + LL+MY K+  + +
Sbjct: 32  SPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCD 91

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F+ +PER+ +S   +I GYA+     EAIELF +L  EG   N   + ++L  L  
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
                 G  +H+ + +    S   +  +LID YS CG +  +R VFD +  + ++SW  M
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC- 391
           +  ++++   +E ++LF+ MR     KP++ T+ +V   C   G+E     V   +  C 
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVG-FKPNNFTFASVFKACL--GLE--AFDVGKSVHGCA 266

Query: 392 -KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            K  +E ++     ++D+  ++G + +A    + +P
Sbjct: 267 LKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP 302


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/587 (40%), Positives = 365/587 (62%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   GL      Y ++L  C +   L  G+++H  +IKT ++  VY+ + LI  Y K  
Sbjct: 405 QMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHG 464

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A  +   + E +VVSWTA+IS Y+Q     EAL  F  ML    + +   F++ ++
Sbjct: 465 KLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAIS 524

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CAG      G+QIH+    S +   + +G++L+ +YA+ GRI EA   FE +  +D +S
Sbjct: 525 ACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS 584

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +ISG+AQ G  E+A+++F ++    + +++ T+ S ++A + +A +  GKQ+H+ ++
Sbjct: 585 WNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMII 644

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S + + N+LI  Y+KCGS+  +RR F  M E+  +SWNAM+ GYS+HG G E V 
Sbjct: 645 KRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVN 704

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M++  ++ P+ VT++ VLS CSH G+  +GL  F E +  + G  P+  HY CVVD
Sbjct: 705 LFEKMKQVGEM-PNHVTFVGVLSACSHVGLVTKGLGYF-ESMSKEHGLVPKPAHYACVVD 762

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           ++ RAG +  A +FI+ MP EP A I  +LL AC VH NV++GEF  Q L+E+EPE++  
Sbjct: 763 LISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSAT 822

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA +G+W+   + R++M+ + V K+PGRSWIE+   +H F+  DR HP+ +++
Sbjct: 823 YVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKI 882

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              + +L+ K  E GY  D   +L DV++EQK+  +  HSEKLA+TFGL+   +  PI V
Sbjct: 883 YEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHV 942

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +KNLR+C DCH++ KFVSK+  R + +RD  RFHH   G CSC DYW
Sbjct: 943 MKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 193/359 (53%), Gaps = 4/359 (1%)

Query: 61  YDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + ++L AC   R  +R  +++HA +I         +   LI  Y K   +  ARK+FD +
Sbjct: 114 FASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNL 173

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             ++ VSW AMIS +SQ  +  EA++LF  M  +   P  + F++VL+ C     F++G+
Sbjct: 174 CTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGE 233

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H+L+ K       YV ++L+ +Y++      A  VF  +  +D VS  ++ISG AQ G
Sbjct: 234 QLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQG 293

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             + A+ELF K++ + +  + VT AS+L+A +   AL  G+Q+HS+V++  I S ++++ 
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEG 353

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+D+Y  C  +  +  +F       V+ WN MLV + K     E   +F  M+ +  + 
Sbjct: 354 ALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI- 412

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           P+  TY ++L  C+  G  D G  +  +++  K GF+  +     ++DM  + G++  A
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVI--KTGFQFNVYVCSVLIDMYAKHGKLDTA 469



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 197/377 (52%), Gaps = 4/377 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM T G+      + ++L+ C   +    G+++HA + K       Y+   L+  Y++  
Sbjct: 203 EMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMP 262

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
               A K+F +M+ ++ VS+ ++IS  +Q+  S  AL LF +M R   +P+  T A++L+
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS 322

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA       G+Q+HS +IK+   S + V  +LLD+Y     I  A  +F      +VV 
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVL 382

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++  + +L    E+  +FR++Q++G+I N  TY S+L   + + AL  G+Q+H+ V+
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI 442

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +      V + + LIDMY+K G L  +  +   ++E  V+SW A++ GY++H +  E ++
Sbjct: 443 KTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALK 502

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F  M     ++ D++ + + +S C+     ++G  +  +      G+  ++     +V 
Sbjct: 503 HFKEMLNRG-IQSDNIGFSSAISACAGIQALNQGRQIHAQ--SYVSGYSEDLSIGNALVS 559

Query: 408 MLGRAGRVGEA-LEFIK 423
           +  R GR+ EA LEF K
Sbjct: 560 LYARCGRIKEAYLEFEK 576



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/563 (24%), Positives = 258/563 (45%), Gaps = 47/563 (8%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+    + Y  LL+ C+N  +L   +++H  ++K  +     L  +L+  Y     L   
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG- 171
            K+F++M  R+V SW  +IS + +K  S   L+LF  M+  +  P E +FA+VL +C+G 
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
             G    +QIH+ II         + + L+ +YAK G I  AR VF+ L  +D VS  A+
Sbjct: 125 RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAM 184

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ISG++Q G +EEAI LF ++   G+      ++SVL+  + +     G+Q+H+ V ++  
Sbjct: 185 ISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS 244

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
                + N+L+ +YS+  +   + +VF  M  +  +S+N+++ G ++ G     +ELF  
Sbjct: 245 SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK 304

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM--- 408
           M+ +  +KPD VT  ++LS C+  G   +G  +   ++  K G   ++   G ++D+   
Sbjct: 305 MKRD-YLKPDCVTVASLLSACASNGALCKGEQLHSYVI--KAGISSDMIVEGALLDLYVN 361

Query: 409 ----------------------------LGRAGRVGEALEFIKNMPFE---PTAAILGSL 437
                                        G+   + E+    + M  +   P      S+
Sbjct: 362 CSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSI 421

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           L  C     +D+GE +  ++++   + N     +L ++YA  G+ +    +      + +
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL-----RTL 476

Query: 497 TKDPGRSWIEL--DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
           T+D   SW  L      H   A    H  +E L+  ++  ++ F  A         L   
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKH-FKEMLNRGIQSDNIGFSSAISACAGIQALNQG 535

Query: 555 DEEQKEKVLLGHSEKLALTFGLI 577
            +   +  + G+SE L++   L+
Sbjct: 536 RQIHAQSYVSGYSEDLSIGNALV 558



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K   +M    LE  F  + + ++A  N   ++ G+++HA +IK  +   + +   LI FY
Sbjct: 603 KVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFY 662

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + DAR+ F EM E+N VSW AMI+ YSQ  +  EA+NLF +M +    PN  TF 
Sbjct: 663 AKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFV 722

Query: 164 TVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            VL++C+       G   FE   + H L+ K    +H    + ++D+ ++AG +  AR  
Sbjct: 723 GVLSACSHVGLVTKGLGYFESMSKEHGLVPKP---AHY---ACVVDLISRAGFLSRARKF 776

Query: 217 FECLP 221
            E +P
Sbjct: 777 IEEMP 781


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/575 (42%), Positives = 355/575 (61%), Gaps = 34/575 (5%)

Query: 91   PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
            P V     +I  Y +   L +A+ +F +M  +N  SW AMI+ + Q   S EAL L I +
Sbjct: 487  PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIEL 546

Query: 151  LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
             RS + P++ +F + L++CA     E+G+ IHSL IK+  + + YV + L+ MYAK G +
Sbjct: 547  HRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNV 606

Query: 211  HE-------------------------------ARGVFECLPERDVVSCTAIISGYAQLG 239
             +                               AR VFE +P+RDVVS TAIIS Y Q G
Sbjct: 607  EDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAG 666

Query: 240  LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              E A++LF  +   G+  N +T  S+L+A   L A+  G+Q H+ + +    +++ + N
Sbjct: 667  HGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGN 726

Query: 300  SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            SLI MY KCG       VF+ M E  +I+WNA+LVG +++G+G+E +++F  M  E  + 
Sbjct: 727  SLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEG-IL 784

Query: 360  PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            PD +++L VL  CSH G+ D G A F+ +   K G  P + HY C+VD+LGRAG + EA 
Sbjct: 785  PDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ-KYGIMPLVYHYTCMVDLLGRAGYLSEAE 843

Query: 420  EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
              I+NMP +P + I  +LLGACR+H NV++G+ V +RL ++    +  YV+LSNL+AS G
Sbjct: 844  ALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQG 903

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
             W+ V  +R+LMK++ +TK+PG SWI++   LH F   DR+H   EE+ + +K+    F+
Sbjct: 904  MWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFR 963

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
              GY+PD + VL+DV+EEQK+  LL HSEKLA+ FG++ TP G+PI++IKNLRIC DCH 
Sbjct: 964  ATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHT 1023

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            F KF+SKV  RK+ +RD NRFHH  +G+CSCGDYW
Sbjct: 1024 FMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 194/384 (50%), Gaps = 15/384 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y  C  +S+AR++FD+M ERN VSW  MIS Y   +  +EA ++F++M R+   P+
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           +  F  VL++  G    EL   +  + IK+ +E  + VGS++L+ Y + G +  A   FE
Sbjct: 361 QSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFE 420

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +PER+  S T +I+ +AQ G  ++AI+L+ ++  + +     T  +++TA + +  +  
Sbjct: 421 TMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQK 476

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            + +   +L    P+ VV  N++I  Y++ G L  ++ +F  M  +   SW AM+ G+ +
Sbjct: 477 ARLIFDEILN---PN-VVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQ 532

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +   RE +EL   +     V  DS ++ + LS C++ G  + G  V H +   K G +  
Sbjct: 533 NEESREALELLIELHRSGSVPSDS-SFTSALSACANIGDVEIG-RVIHSLA-IKTGCQFN 589

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
                 ++ M  + G V +     + +  + T +   SL+     +Y +D    V +++ 
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLISGLSENYMLDDARVVFEKM- 647

Query: 459 EIEPENAGNYVILSNLYASAGRWE 482
                +  ++  + + Y  AG  E
Sbjct: 648 --PKRDVVSWTAIISAYVQAGHGE 669



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 166/362 (45%), Gaps = 50/362 (13%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +AR++F+EM +R+VVSW +MI+ YSQ     EA  LF   +  +      T+  +LT 
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLTG 242

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A     E  ++    + +S  E ++   ++++  Y + G +  AR +F+ +PE++V S 
Sbjct: 243 YAKEGRIEEARE----VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASW 298

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEG------MISNYV--------------------- 261
            ++++GY       EA ELF ++          MIS YV                     
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 262 ----TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
                +  VL+A++GL  L     +    ++      VV+ +++++ Y++ GSL  +   
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F+ M ER   SW  M+  +++ G   + ++L+  + E+        T  A+++  +  G 
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT-----VATKTAMMTAYAQVGR 473

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
             +   +F EI++      P +  +  ++    + G + EA +  + MP + +A+    +
Sbjct: 474 IQKARLIFDEILN------PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMI 527

Query: 438 LG 439
            G
Sbjct: 528 AG 529



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 40/270 (14%)

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           K   ++H++  ++ +    + GR+ EAR VF  + +RDVVS  ++I+GY+Q G  +EA  
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           LF       +  N  T+  +LT  +    +   ++V   +    + S+    N++I  Y 
Sbjct: 224 LFDAF----VGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSW----NAMISGYV 275

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV-------- 358
           + G L  +R++FD M E+ V SWN+++ GY       E  ELF+ M E N V        
Sbjct: 276 QNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISG 335

Query: 359 ----------------------KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
                                 +PD   ++ VLS  +  G++D  L      +  K G+E
Sbjct: 336 YVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT--GLDDLELIGSLRPIAIKTGYE 393

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            ++     +++   R G +  A+ F + MP
Sbjct: 394 GDVVVGSAILNAYTRNGSLDLAMHFFETMP 423



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 89/177 (50%), Gaps = 2/177 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G++       +LL+AC N   ++ G++ HA + K  +   +++   LI  Y K
Sbjct: 675 FLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFK 734

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C    D   +F+EM E ++++W A++   +Q     EA+ +F +M      P++ +F  V
Sbjct: 735 C-GYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGV 793

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L +C+ A   + G    +S+  K      +Y  + ++D+  +AG + EA  + E +P
Sbjct: 794 LCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMP 850


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/621 (39%), Positives = 380/621 (61%), Gaps = 39/621 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M +LGL      +  LL +C   +  R GQ++H H++K  Y   +Y+ T LI  Y +   
Sbjct: 79  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 138

Query: 109 LSDARK-------------------------------MFDEMRERNVVSWTAMISAYSQK 137
           L DARK                               MFDE+  ++VVSW AMIS Y++ 
Sbjct: 139 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 198

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
            ++ EAL LF  M++++  P+E T  +V+++CA +   ELG+Q+HS I    F S++ + 
Sbjct: 199 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 258

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D+Y K G +  A G+FE L  +DV+S   +I GY  + L +EA+ LF+++   G  
Sbjct: 259 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTYSR 315
            N VT  S+L A + L A+  G+ +H ++ +    + +    + SLIDMY+KCG +  ++
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 378

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VFD++  R++ SWNAM+ G++ HG      ++F+ MR+ N+++PD +T++ +LS CSH 
Sbjct: 379 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK-NEIEPDDITFVGLLSACSHS 437

Query: 376 GMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           GM D G  +F  +   K+ ++  P++EHYGC++D+LG +G   EA E I  M  EP   I
Sbjct: 438 GMLDLGRHIFRSM---KEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 494

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             SLL AC++H NV++GE   Q L++IEP+N G+YV+LSN+YA+AGRW +V ++R L+ +
Sbjct: 495 WCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 554

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S VL +
Sbjct: 555 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 614

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           ++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y R++ 
Sbjct: 615 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 674

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
            RD+ RFHH  +G CSC DYW
Sbjct: 675 ARDRTRFHHFRDGVCSCNDYW 695



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 206/422 (48%), Gaps = 40/422 (9%)

Query: 80  VHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           +HA MIKT      Y  ++LI   V     + L  A  +F+ ++E N++ W  M   ++ 
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            +    AL L++ M+     PN +TF  +L SCA +  F  G+QIH  ++K  ++  +YV
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI------------------------- 231
            +SL+ MY + GR+ +AR VF+    RDVVS TA+                         
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 232 ------ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
                 ISGYA+ G ++EA+ELF+++    +  +  T  SV++A +  A++  G+QVHS 
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +      S + + N+LID+Y KCG +  +  +F+ +S + VISWN ++ GY+   + +E 
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 305

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           + LF  M    +  P+ VT L++L  C+H G  + G  +   I     G      H   +
Sbjct: 306 LLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSL 364

Query: 406 VDMLGRAGRVGEA---LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
           +DM  + G +  A    + I N       A++       R +   DI  F   R  EIEP
Sbjct: 365 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDI--FSRMRKNEIEP 422

Query: 463 EN 464
           ++
Sbjct: 423 DD 424


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/624 (39%), Positives = 374/624 (59%), Gaps = 35/624 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +    GQ++H H++K  Y P +Y+ T LI  Y
Sbjct: 52  KLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMY 111

Query: 104 NKCECLSDARK-------------------------------MFDEMRERNVVSWTAMIS 132
            +   L DA K                               MFDE+  ++VVSW AMIS
Sbjct: 112 AQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMIS 171

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++     EAL LF  M++++  P+E T  TVL++CA +   ELG+Q+HS I    F S
Sbjct: 172 GYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGS 231

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G++  A G+FE L  +DVVS   +I GY  + L +EA+ LF+++ 
Sbjct: 232 NLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 291

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +   ++ +   L+ SLIDMY+KCG 
Sbjct: 292 RSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD 351

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF++M  +++ SWNAM+ G++ HG      +LF+ MR+ N ++PD +T++ +LS
Sbjct: 352 IEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRK-NGIEPDDITFVGLLS 410

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G  D G  +F  +    D   P++EHYGC++D+LG +G   EA E IK MP EP 
Sbjct: 411 ACSHSGKLDLGRHIFKSMTQDYD-ITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPD 469

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
             I  SLL ACR H N+++ E   + LM++EPEN G+YV+LSN+YA+AG W++V +VR L
Sbjct: 470 GVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRAL 529

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           +  K + K PG S IE+D  +H F   D+ HP   E+   ++++    +EAG+VPD S V
Sbjct: 530 LNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEV 589

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K VSK+Y R
Sbjct: 590 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKR 649

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++  RD+ RFHH  +G CSC D+W
Sbjct: 650 EIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 192/388 (49%), Gaps = 39/388 (10%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F  ++E N + W  M+  Y+  +    AL L++ M+     PN +TF  +L SCA 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +  FE G+QIH  ++K  +E  +YV +SL+ MYA+ GR+ +A  VF+    RDVVS TA+
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 232 ISGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------------ 261
           I+GYA  G    A E+F ++ V+       MIS Y                         
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 262 -TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T  +VL+A +   ++  G+QVHS +      S + + N+LID+YSKCG +  +  +F+ 
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEG 258

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           +S + V+SWN ++ GY+   + +E + LF  M    +  P+ VT +++L  C+H G  D 
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTIVSILPACAHLGAIDI 317

Query: 381 GLAVFHEIVD--CKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
           G  + H  +D   KD    P +     ++DM  + G +  A +   +M  +  ++    +
Sbjct: 318 GRWI-HVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 438 LG-ACRVHYNVDIGEFVGQRLMEIEPEN 464
            G A     N     F   R   IEP++
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDD 402



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           Y+  VF  + E   + WN ML GY+        ++L+ +M     + P+S T+  +L  C
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG-LLPNSYTFPFLLKSC 76

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +     + G  +   ++  K G+EP++  +  ++ M  + GR+ +A
Sbjct: 77  AKSKAFEEGQQIHGHVL--KLGYEPDLYVHTSLISMYAQNGRLEDA 120


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 364/572 (63%), Gaps = 2/572 (0%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++L A V   ++  G+ +HA  +KT Y    ++   L+  Y KC  + DAR  F+ +   
Sbjct: 637  SVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTND 696

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            +V+ W+ MIS Y+Q   + +A  LFIRM+RS   PNEF+ ++VL +CA     +LGKQIH
Sbjct: 697  DVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIH 756

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            +  IK   ES ++VG++L+D+YAK   +  +  +F  L + + VS   II GY++ G  E
Sbjct: 757  NHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGE 816

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             A+ +FR+++   + S  VTY+SVL A +  A++ H  QVH  + +    S  ++ NSLI
Sbjct: 817  AALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLI 876

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            D Y+KCG +  +R +F+ + E  ++SWNA++ GY+ HG      ELF++M  +N +K + 
Sbjct: 877  DSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMM-SKNSIKAND 935

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            +T++A+LS C   G+  +GL++F  +     G EP +EHY C+V +LGRAGR+ +AL FI
Sbjct: 936  ITFVALLSVCGSTGLVSQGLSLFDSM-RLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFI 994

Query: 423  KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             ++P  P+A +  +LL +C VH NV++G F  ++++EIEP++   YV+LSN+Y++AG  +
Sbjct: 995  GDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLD 1054

Query: 483  DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
             V   R+ M+   V K+PG SW+E+   +H F      HP    ++A ++ L++K    G
Sbjct: 1055 QVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREG 1114

Query: 543  YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
            YVPD   VL+D++EEQK ++L  HSE+LAL +GL+ TP G PIR++KNLR C+DCH   K
Sbjct: 1115 YVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFK 1174

Query: 603  FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +SK+  +++ +RD NRFHH  EGTCSCGDYW
Sbjct: 1175 VISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 205/398 (51%), Gaps = 10/398 (2%)

Query: 35  TLCSNGQLTKALIEMATLGLEMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMIKT 87
           TL     L     E + L   +R+E ++       T+L   V   TL     VHA   K 
Sbjct: 501 TLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKL 560

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
            +    ++ + LI  Y+ C  +SDAR++FD +  ++ V+WTAM+S YS+       L +F
Sbjct: 561 GHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIF 620

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +M  + ++ N F   +VL +        LGK IH+  +K+ +++  +V  +LLDMYAK 
Sbjct: 621 SKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKC 680

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G I +AR  FE +   DV+  + +IS YAQ   +E+A ELF ++    +  N  + +SVL
Sbjct: 681 GNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVL 740

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + +  L  GKQ+H+H ++    S + + N+LID+Y+KC  +  S  +F ++ +   +
Sbjct: 741 QACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEV 800

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWN ++VGYSK G G   + +F  MR  + V    VTY +VL  C+     +  +   H 
Sbjct: 801 SWNTIIVGYSKSGFGEAALSVFREMRAAS-VPSTQVTYSSVLRACASTASINH-VGQVHC 858

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +++ K  F  +      ++D   + G + +A E  + +
Sbjct: 859 LIE-KSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL 895



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 205/424 (48%), Gaps = 14/424 (3%)

Query: 5   KKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTL 64
           ++ SR   S  F Q        PP  ++L    +   L   L  +A     +    Y  L
Sbjct: 382 RRLSRRLHSAFFNQA-------PPRRRDLAANAALQWLEDELTSLAFPWPGVDSYAYARL 434

Query: 65  LNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           L  CV +   RGG+ VH H++++    R  ++    L+  Y K      A ++FD + ER
Sbjct: 435 LQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPER 494

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VS+  ++  ++ +    EA  LF R+     E N+F   TVL          L   +H
Sbjct: 495 NMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVH 554

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +   K   + + +VGS+L+D Y+  G + +AR VF+ +  +D V+ TA++S Y++    E
Sbjct: 555 ACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPE 614

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             +++F K++V     N     SVL A   L+++  GK +H+  ++    +   +  +L+
Sbjct: 615 NTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALL 674

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPD 361
           DMY+KCG++  +R  F+ ++   VI W+ M+  Y++     +  ELF  +MR  + V P+
Sbjct: 675 DMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMR--SSVSPN 732

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             +  +VL  C++  + D G  + +  +  K G E E+     ++D+  +   +  +LE 
Sbjct: 733 EFSLSSVLQACANMPLLDLGKQIHNHAI--KIGHESELFVGNALIDLYAKCSDMESSLEI 790

Query: 422 IKNM 425
             ++
Sbjct: 791 FSSL 794


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/591 (39%), Positives = 362/591 (61%), Gaps = 4/591 (0%)

Query: 46  LIEMATLGLEMRFEEYDTL--LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           L +M T   +M+ +E+  L  L  C+ +  L+  + +H +  +   +    +    I  Y
Sbjct: 293 LQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAY 352

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            +C  L  + ++FD M  + V SW A++  Y+Q +   +AL+L+++M  S  +P+ FT  
Sbjct: 353 TRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 412

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +C+       G++IH   +++      ++G SLL +Y   G+   A+ +F+ +  R
Sbjct: 413 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 472

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            +VS   +I+GY+Q GL +EAI LFR++  +G+    +    V  A S L+AL  GK++H
Sbjct: 473 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 532

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
              L+  +   + + +S+IDMY+K G +  S+R+FD + E+ V SWN ++ GY  HG G+
Sbjct: 533 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 592

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E +ELF  M     +KPD  T+  +L  CSH G+ + GL  F+++++  +  EP++EHY 
Sbjct: 593 EALELFEKMLRLG-LKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN-IEPKLEHYT 650

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           CVVDMLGRAGR+ +AL  I+ MP +P + I  SLL +CR+H N+ +GE V  +L+E+EPE
Sbjct: 651 CVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE 710

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
              NYV++SNL+A +G+W+DV RVR  MK+  + KD G SWIE+   +H F   D   P 
Sbjct: 711 KPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPE 770

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
            EE+    ++L VK    GY PD   VL+D++EE K  +L GHSEKLA++FGL+ T +G 
Sbjct: 771 LEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGL 830

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           P+RV KNLRIC DCHN AKF+SKV  R + +RD  RFHH  +G CSCGDYW
Sbjct: 831 PVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 184/318 (57%), Gaps = 11/318 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            LL AC  ++ +  G+R+H  +   T +     L TR+I  Y+ C   SD+R +FD++R 
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +N+  W A++SAY++     +A+++F  ++  ++ +P+ FT   V+ +CAG     LG+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH +  K +  S ++VG++L+ MY K G + EA  VFE +PER++VS  +II G+++ G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 241 DEEAIELFRKLQV--EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            +E+   FR++ V  E  + +  T  +VL   +G   +  G  VH   ++  +   +++ 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR----E 354
           NSLIDMYSKC  L+ ++ +FD   ++ ++SWN+M+ GY++     +V   F L++    E
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYARE---EDVCRTFYLLQKMQTE 299

Query: 355 ENKVKPDSVTYLAVLSGC 372
           + K+K D  T L VL  C
Sbjct: 300 DAKMKADEFTILNVLPVC 317



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 214/466 (45%), Gaps = 39/466 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L  C  +  +  G  VH   +K      + +   LI  Y+KC  LS+A+ +FD+  ++
Sbjct: 209 TVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKK 268

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT--EPNEFTFATVLTSCAGAFGFELGKQ 180
           N+VSW +MI  Y+++        L  +M   D   + +EFT   VL  C      +  K+
Sbjct: 269 NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKE 328

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H    +   +S+  V ++ +  Y + G +  +  VF+ +  + V S  A++ GYAQ   
Sbjct: 329 LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSD 388

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A++L+ ++   G+  ++ T  S+L A S + +L +G+++H   LR  +     +  S
Sbjct: 389 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 448

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ +Y  CG    ++ +FD M  R+++SWN M+ GYS++G+  E + LF  M  +  ++P
Sbjct: 449 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG-IQP 507

Query: 361 DSVTYLAVLSGCSHGGMEDRG---------------LAVFHEIVD--CKDGF-------- 395
             +  + V   CS       G               + V   I+D   K G         
Sbjct: 508 YEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 567

Query: 396 ----EPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVD 448
               E ++  +  ++   G  GR  EALE  + M     +P       +L AC     V+
Sbjct: 568 DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE 627

Query: 449 IG-EFVGQ--RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
            G E+  Q   L  IEP+   +Y  + ++   AGR +D  R+ E M
Sbjct: 628 DGLEYFNQMLNLHNIEPK-LEHYTCVVDMLGRAGRIDDALRLIEEM 672



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 279 GKQVHSHV-LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           G+++H  V    +  +  VL   +I MYS CGS + SR VFD +  + +  WNA++  Y+
Sbjct: 17  GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 76

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++ +  + + +F+ +    + KPD+ T   V+  C+  G+ D GL      +  K     
Sbjct: 77  RNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVS 134

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           ++     ++ M G+ G V EA++  ++MP
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMP 163


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 377/612 (61%), Gaps = 9/612 (1%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           N   +++LC  G L +A +++         + ++ L+N+C+ Q +L  G  VH  ++ + 
Sbjct: 46  NDDLIQSLCRGGNLKQA-VQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSG 104

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                YL T+LI  Y     +  A K+FDE RE+ +  W A+  A +  +   + L L+ 
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYG 164

Query: 149 RMLRSDTEPNEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +M       N FT+  VL +C            GK+IH+ I++  +E H++V ++LLD+Y
Sbjct: 165 QMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVY 224

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVT 262
           A+ G +  A  VF  +P++++VS +A+I+ YA+  +  +A+ELF+ + +E    + N +T
Sbjct: 225 ARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPIT 284

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SVL A + LAAL HGK VH++VLR  + S + + N+LI MY +CG ++  +RVFD M 
Sbjct: 285 MVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK 344

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R VISWN+++  Y  HG+G++ +++F  M     V P  +T++ VL  CSH G+ +   
Sbjct: 345 KRDVISWNSLISIYGMHGLGKKAIQIFENMINRG-VSPSYITFITVLCACSHAGLVEEAK 403

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F  +++ K    P +EHY C+VD+LGRA R+ EA+E I+NM F+P   + GSLLG+CR
Sbjct: 404 ILFESMLN-KYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCR 462

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++ E     L E+EP+NAGNYV+LS++YA +  W DV RVR+ ++ + + K P  
Sbjct: 463 IHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSC 522

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIE+ + +++  + +  +P  EEL A +  L  + K  GYVP  + V YD+DEE+KE++
Sbjct: 523 SWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERI 582

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +LGHS KLA+ FGLI T +G  IR+  NLR+C DCH F KFVSK   R++ LRD NRFH 
Sbjct: 583 VLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHC 642

Query: 623 IVEGTCSCGDYW 634
             +G CSCGDYW
Sbjct: 643 FKDGVCSCGDYW 654


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 383/634 (60%), Gaps = 22/634 (3%)

Query: 11  FSSLTFTQQQL------TVPSFPPNPQNLKTL--CSNGQLTKALIEMATLGLEMRFEEYD 62
           F+SL+   Q        + P F  N  +LK +  CSN              L   +  Y 
Sbjct: 27  FASLSLQYQSPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTC-------LTPTYSNYA 79

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL +C+ ++ ++ G+++HA +    +     + T+L+  Y  C+ LS AR +FD + + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+  W  +I  Y+       A+ L+ +M      P+ FTF  VL +CA     E G++IH
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++++ +E  ++VG++L+DMYAK G +  AR VF+ +  RD V   ++++ Y+Q G  +
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPD 259

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             + L  ++ + G+     T  + ++A +  AAL  G+++H    R E  S+  ++ +L+
Sbjct: 260 ACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALV 319

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV-KPD 361
           DMY+KCGS+  +R +F+ +  + V+SWNAM+ GY+ HG   E ++LF    E N+V KPD
Sbjct: 320 DMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLF---EEMNRVAKPD 376

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            +T++ VLS CSHGG+ + G   F  ++ D K   +P ++HY C+VD+LG +GR+ EA  
Sbjct: 377 HITFVGVLSACSHGGLLEEGWMFFETMIRDYK--IDPTVQHYTCMVDLLGHSGRLDEAYN 434

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            I  M   P + + G+LL +C++H NV++GE   +RL+E+EP++AGNYVILSN+YA AG+
Sbjct: 435 LIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGK 494

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE V ++R+LM ++ + K    SWIE+   +H F + D SHP+ +E+ ++++++    KE
Sbjct: 495 WEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKE 554

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGY P    V +DV++++K  ++  HSE+LA+ FGLI TP G  + + KNLRIC DCH  
Sbjct: 555 AGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVA 614

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+  R++++RD NR+HH  +G CSCGDYW
Sbjct: 615 IKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 374/614 (60%), Gaps = 14/614 (2%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G   +AL+    M  L L      +   + AC +   +  G++ H       Y
Sbjct: 48  IADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGY 107

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +  +++ + LIV Y+ C  L DARK+FDE+ +RN+VSWT+MI  Y    ++ +A++LF  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 150 MLRSDTEPNEFTF------ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           +L  + + ++  F       +V+++C+      L + IHS +IK  F+  + VG++LLD 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227

Query: 204 YAKAGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NY 260
           YAK G   +  AR +F+ + ++D VS  +I+S YAQ G+  EA E+FR+L    +++ N 
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA 287

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +T ++VL A+S   AL  GK +H  V+R  +   V++  S+IDMY KCG +  +R+ FD 
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDR 347

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + V SW AM+ GY  HG   + +ELF  M +   V+P+ +T+++VL+ CSH G+   
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGLHVE 406

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G   F+ +   + G EP +EHYGC+VD+LGRAG + +A + I+ M  +P + I  SLL A
Sbjct: 407 GWRWFNAM-KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR+H NV++ E    RL E++  N G Y++LS++YA AGRW+DV RVR +MK + + K P
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G S +EL+  +H F   D  HP RE++   + +L+ K  EAGYV + S V +DVDEE+KE
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
             L  HSEKLA+ FG++ T  G+ + V+KNLR+C DCHN  K +SK+  R+  +RD  RF
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRF 645

Query: 621 HHIVEGTCSCGDYW 634
           HH  +G CSCGDYW
Sbjct: 646 HHFKDGGCSCGDYW 659



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 170/324 (52%), Gaps = 13/324 (4%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V SW ++I+  ++   S EAL  F  M +    P   +F   + +C+  F    GKQ H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                  ++S I+V S+L+ MY+  G++ +AR VF+ +P+R++VS T++I GY   G   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 243 EAIELFRKLQV------EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +A+ LF+ L V      + M  + +   SV++A S + A G  + +HS V++      V 
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 297 LQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + N+L+D Y+K   G +  +R++FD + ++  +S+N+++  Y++ GM  E  E+F  + +
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V  +++T   VL   SH G    G  +  +++  + G E ++     ++DM  + GR
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI--RMGLEDDVIVGTSIIDMYCKCGR 337

Query: 415 VG---EALEFIKNMPFEPTAAILG 435
           V    +A + +KN       A++ 
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIA 361


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/625 (39%), Positives = 372/625 (59%), Gaps = 39/625 (6%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M +LG       +  LL +C   +    G+++HA ++K       Y+ T LI  Y + 
Sbjct: 53  VRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARN 112

Query: 107 ECLSDARKMFD-------------------------------EMRERNVVSWTAMISAYS 135
             L DARK+FD                               E+ ER+VVSW AMI+ Y 
Sbjct: 113 GGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYV 172

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFE 191
           +     EAL LF  M+R++  P+E T  +V+++CA +   ELG+Q+HS +        F 
Sbjct: 173 ENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFS 232

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S + + ++L+D+Y+K G +  A G+FE L  +DVVS   +I GY    L +EA+ LF+++
Sbjct: 233 SSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM 292

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCG 309
              G   N VT  SVL A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG
Sbjct: 293 LRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCG 352

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  + +VF++M  R++ SWNAM+ G++ HG      +LF+ MR  N+V+PD +T++ +L
Sbjct: 353 DIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRG-NRVEPDDITFVGLL 411

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           S CSH G+ D G  +F  +    +   P++EHYGC++D+LG +G   EA E I  MP EP
Sbjct: 412 SACSHSGLLDLGRQIFKSMTQDYN-LTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEP 470

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC+ H N+++ E   Q+L++IEPEN+G+YV+LSN+YA+AGRWEDV RVR 
Sbjct: 471 DGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRG 530

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           ++  K + K PG S IE+D ++H F   D+ HP R E+   ++++ V+ +EAG+ PD S 
Sbjct: 531 VLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSE 590

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y 
Sbjct: 591 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 650

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD+ RFHH  +G CSC DYW
Sbjct: 651 REIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 195/390 (50%), Gaps = 39/390 (10%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F+ ++E N++ W  M+  ++  +    AL +++RM+     PN ++F  +L SCA 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +  FE G+QIH+ ++K       YV +SL+ MYA+ G + +AR VF+    RDVVSCTA+
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 232 ISGYAQLG--------LD-----------------------EEAIELFRKLQVEGMISNY 260
           I+GYA  G         D                       EEA+ELF+++    +  + 
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFE----IPSYVVLQNSLIDMYSKCGSLTYSRR 316
            T  SV++A +   ++  G+QVHS V   +      S + + N+LID+YSKCG +  +  
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +F+ +S + V+SWN ++ GY+   + +E + LF  M    +  P+ VT L+VL  C+H G
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC-PNDVTLLSVLPACAHLG 315

Query: 377 MEDRGLAVFHEIVDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
             D G  + H  +D K  G   E      ++DM  + G +  A +   +M +   ++   
Sbjct: 316 AIDIGRWI-HVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374

Query: 436 SLLG-ACRVHYNVDIGEFVGQRLMEIEPEN 464
            + G A     N     F   R   +EP++
Sbjct: 375 MIFGFAMHGRANAAFDLFSRMRGNRVEPDD 404


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 372/603 (61%), Gaps = 33/603 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK----------------- 105
           T+L     Q  +  G +VH H++K  ++  V++ + L+  Y+K                 
Sbjct: 147 TMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEK 206

Query: 106 --------------CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                         C  + D+R++F +M+E++ +SWTAMI+ ++Q     EA++LF  M 
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
             + E +++TF +VLT+C G    + GKQ+H+ II+++++ +I+VGS+L+DMY K   I 
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIK 326

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            A  VF  +  ++VVS TA++ GY Q G  EEA+++F  +Q  G+  +  T  SV+++ +
Sbjct: 327 SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCA 386

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA+L  G Q H   L   + S++ + N+L+ +Y KCGS+  S R+F  MS    +SW A
Sbjct: 387 NLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTA 446

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ GY++ G   E + LF  M      KPD VT++ VLS CS  G+  +G  +F  ++  
Sbjct: 447 LVSGYAQFGKANETLRLFESMLAHG-FKPDKVTFIGVLSACSRAGLVQKGNQIFESMIK- 504

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           +    P  +HY C++D+  RAGR+ EA +FI  MPF P A    SLL +CR H N++IG+
Sbjct: 505 EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGK 564

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           +  + L+++EP N  +Y++LS++YA+ G+WE+V  +R+ M++K + K+PG SWI+    +
Sbjct: 565 WAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQV 624

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D+S+P  +++ +++++L+ K  + GYVPDM+ VL+DVD+ +K K+L  HSEKLA
Sbjct: 625 HIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLA 684

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGLI  P G PIRV+KNLR+C DCHN  K++SK+  R++ +RD  RFH   +G CSCG
Sbjct: 685 IAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCG 744

Query: 632 DYW 634
           D+W
Sbjct: 745 DFW 747



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 215/435 (49%), Gaps = 82/435 (18%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C      R  +++H H+IK    P ++L   L+  Y K + ++ AR++FD+M 
Sbjct: 18  YCELLKHC------RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMP 71

Query: 121 ERNVVSWTAMISAYSQKA----------------------------------HSFEALNL 146
           +RN+ SW  ++S+YS+ A                                   S +A NL
Sbjct: 72  QRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNL 131

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
              +       N    +T+L   +      LG Q+H  ++K  F+S+++VGS L+DMY+K
Sbjct: 132 M--LYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSK 189

Query: 207 AGRIHEARGVFECLPERDVV-------------------------------SCTAIISGY 235
            G +  AR  F+ +PE++VV                               S TA+I+G+
Sbjct: 190 TGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGF 249

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q GLD EAI+LFR++++E +  +  T+ SVLTA  G+ AL  GKQVH++++R +    +
Sbjct: 250 TQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNI 309

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + ++L+DMY KC S+  +  VF  M+ + V+SW AMLVGY ++G   E V++F  M + 
Sbjct: 310 FVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDM-QN 368

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK---DGFEPEIEHYGCVVDMLGRA 412
           N ++PD  T  +V+S C++    + G A FH    C+    G    I     +V + G+ 
Sbjct: 369 NGIEPDDFTLGSVISSCANLASLEEG-AQFH----CRALVSGLISFITVSNALVTLYGKC 423

Query: 413 GRVGEALEFIKNMPF 427
           G + ++      M +
Sbjct: 424 GSIEDSHRLFSEMSY 438



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 2/288 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM    LEM    + ++L AC     L+ G++VHA++I+T Y+  +++ + L+  Y KC+
Sbjct: 264 EMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCK 323

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F +M  +NVVSWTAM+  Y Q  +S EA+ +F  M  +  EP++FT  +V++
Sbjct: 324 SIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVIS 383

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SCA     E G Q H   + S   S I V ++L+ +Y K G I ++  +F  +   D VS
Sbjct: 384 SCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS 443

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA++SGYAQ G   E + LF  +   G   + VT+  VL+A S    +  G Q+   ++
Sbjct: 444 WTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMI 503

Query: 288 R-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           +   I         +ID++S+ G L  +R+  + M      I W ++L
Sbjct: 504 KEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 117/237 (49%), Gaps = 12/237 (5%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  K   +M   G+E       +++++C N  +L  G + H   + +     + +   L+
Sbjct: 358 EAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALV 417

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + D+ ++F EM   + VSWTA++S Y+Q   + E L LF  ML    +P++ 
Sbjct: 418 TLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKV 477

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSN----FESHIYVGSSLLDMYAKAGRIHEARGV 216
           TF  VL++C+ A   + G QI   +IK +     E H    + ++D++++AGR+ EAR  
Sbjct: 478 TFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY---TCMIDLFSRAGRLEEARKF 534

Query: 217 FECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
              +P   D +   +++S    +  + + + A E   KL+     S Y+  +S+  A
Sbjct: 535 INKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTAS-YILLSSIYAA 590


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/625 (39%), Positives = 375/625 (60%), Gaps = 17/625 (2%)

Query: 13  SLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACV 69
           S + T Q L +  F         LC    L +A+  M +L   GL      Y  L+  C+
Sbjct: 20  SYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           + R +  G  +  H+    +RP ++L   LI  Y K   L+DA ++FD+M +RNV+SWT 
Sbjct: 73  SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           MISAYS+     +AL L + MLR +  PN +T+++VL SC G     +   +H  IIK  
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEG 189

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            ES ++V S+L+D++AK G   +A  VF+ +   D +   +II G+AQ    + A+ELF+
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFK 249

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++  G I+   T  SVL A +GLA L  G Q H H+++++    ++L N+L+DMY KCG
Sbjct: 250 RMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCG 307

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           SL  + RVF+ M ER VI+W+ M+ G +++G  +E ++LF  M+     KP+ +T + VL
Sbjct: 308 SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG-TKPNYITIVGVL 366

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             CSH G+ + G   F  +     G +P  EHYGC++D+LG+AG++ +A++ +  M  EP
Sbjct: 367 FACSHAGLLEDGWYYFRSMKKLY-GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEP 425

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            A    +LLGACRV  N+ + E+  ++++ ++PE+AG Y +LSN+YA++ +W+ V  +R 
Sbjct: 426 DAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRT 485

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
            M+++ + K+PG SWIE+++ +H F   D SHP   E+S K+ QL  +    GYVP+ + 
Sbjct: 486 RMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNF 545

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL D++ EQ E  L  HSEKLAL FGL+  P    IR+ KNLRIC DCH F K  SK+  
Sbjct: 546 VLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEI 605

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + +RD  R+HH  +G CSCGDYW
Sbjct: 606 RSIVIRDPIRYHHFQDGKCSCGDYW 630


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/639 (39%), Positives = 378/639 (59%), Gaps = 39/639 (6%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L+ L S+  L   L   + M + G       +  LL +C   +T   G+++HA ++K   
Sbjct: 55  LRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGC 114

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDE------------------------------- 118
               Y  T LI  Y +   L DARK+FD                                
Sbjct: 115 ELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDX 174

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           + ER+VVSW AMI+ Y +     EAL LF  M+R++  P+E T  +VL++CA +   ELG
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 179 KQIHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           ++IH+L+   + F S + + ++ + +Y+K G +  A G+FE L  +DVVS   +I GY  
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYV 295
           + L +EA+ LF+++   G   N VT  SVL A + L A+  G+ +H ++ +    + +  
Sbjct: 295 MNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGS 354

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            L+ SLIDMY+KCG +  + +VF++M  +++ SWNAM+ G++ HG      +LF+ MR+ 
Sbjct: 355 ALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK- 413

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           N ++PD +T + +LS CSH G+ D G  +F  +    +   P++EHYGC++D+LG AG  
Sbjct: 414 NGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN-ITPKLEHYGCMIDLLGHAGLF 472

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA E I  MP EP   I  SLL AC++H N+++ E   Q+LMEIEPEN+G+YV+LSN+Y
Sbjct: 473 KEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIY 532

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A+AGRWEDV R+RE++  K + K PG S IE+D ++H F   D+ HP   E+   ++++ 
Sbjct: 533 ATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMD 592

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           V  +EAG+VPD S VL +++EE KE  L  HSEKLA+ FGLI T  G  + V+KNLR+C 
Sbjct: 593 VLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCR 652

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +CH   K +SK+Y R++  RD+ RFHH  +G CSC DYW
Sbjct: 653 NCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 204/422 (48%), Gaps = 39/422 (9%)

Query: 80  VHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            HA M+KT      Y  ++L+   V     + L  A  +F+  +E N++ W  M+   + 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            +     L +++RM+     PN +TF  +L SCA +  FE G+QIH+ ++K   E   Y 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG--------LD------- 241
            +SL+ MYA+ GR+ +AR VF+   +RDVVSCTA+I+GYA  G         D       
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 242 ----------------EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
                           EEA+ELF+++    +  +  T  SVL+A +   ++  G+++H+ 
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 286 VLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           V       S + + N+ I +YSKCG +  +  +F+ +S + V+SWN ++ GY+   + +E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK-DGFEPEIEHYG 403
            + LF  M    +  P+ VT L+VL  C+H G  D G  + H  +D +  G         
Sbjct: 301 ALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGAIDIGRWI-HVYIDKRLKGVTNGSALRT 358

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVDIGEFVGQRLMEIEP 462
            ++DM  + G +  A +   +M  +  ++    + G A     N     F   R   IEP
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418

Query: 463 EN 464
           ++
Sbjct: 419 DD 420


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/624 (40%), Positives = 378/624 (60%), Gaps = 55/624 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD----- 117
            +L AC + + +   + VH + I+    P V++   LI  Y KC  + +A K+F+     
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 118 --------------------------EMRERN----VVSWTAMISAYSQKAHSFEALNLF 147
                                      MR+ N    VV+WTA+I+ YSQ+  S EALNLF
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-------LIIKSNF---ESHIYVG 197
            +M+ S + PN  T  +VL++CA    F  G +IH+       L + ++F   +  + V 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 198 SSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE- 254
           ++L+DMY+K      AR +F+ +P  ER+VV+ T +I G+AQ G   +A++LF ++  E 
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 255 -GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCGS 310
            G+  N  T + +L A + LAA+  GKQ+H++VLR   +E  +Y V  N LIDMYSKCG 
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV-ANCLIDMYSKCGD 575

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R VFD+MS+++ ISW +M+ GY  HG G E +++F+ MR+   V PD +T+L VL 
Sbjct: 576 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV-PDDITFLVVLY 634

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D+GL+ F + +    G  P  EHY C +D+L R+GR+ +A   +K+MP EPT
Sbjct: 635 ACSHCGMVDQGLSYF-DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 693

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A +  +LL ACRVH NV++ E    +L+E+  EN G+Y ++SN+YA+AGRW+DV R+R L
Sbjct: 694 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 753

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           MK+  + K PG SW++  +   +F   DRSHP+  ++ A ++ L  + K  GYVP+ +  
Sbjct: 754 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 813

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L+DVDEE+K  +L+ HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+   
Sbjct: 814 LHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDH 873

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ +RD +RFHH   G+CSCG YW
Sbjct: 874 EIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 202/420 (48%), Gaps = 59/420 (14%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           +L AC    + R G   H  +    +   V++   L+  Y++C  L +A  +FDE+ +R 
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227

Query: 123 --NVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNE----FTFATVLTSCAGAFG 174
             +V+SW +++SA+ + ++++ AL+LF +M  +  +   NE     +   +L +C     
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 287

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------- 227
               K++H   I++     ++VG++L+D YAK G +  A  VF  +  +DVVS       
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347

Query: 228 ----------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                                        TA+I+GY+Q G   EA+ LFR++   G + N
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY----------VVLQNSLIDMYSKCG 309
            VT  SVL+A + L A   G ++H++ L+  + +           +++ N+LIDMYSKC 
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 310 SLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYL 366
           S   +R +FD+  + ER V++W  M+ G++++G   + ++LF  ++ E   V P++ T  
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKNM 425
            +L  C+H      G  + H  V     +E        C++DM  + G V  A     +M
Sbjct: 528 CILMACAHLAAIRIGKQI-HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 586



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 183/369 (49%), Gaps = 33/369 (8%)

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--------------------Y 89
           A +G+++    + +LL  C +  T+    ++H  +I +                     +
Sbjct: 36  ACIGVDVYPSHFASLLKECKSANTV---HQIHQQIIASGLLSLPTPLLSVSLPALPSEPF 92

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
             P  L T ++  Y  C     A  + + +     V W  +I  + ++     A+N+  R
Sbjct: 93  ISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCR 152

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR+ T P+ FT   VL +C     +  G   H LI  + FES++++ ++L+ MY++ G 
Sbjct: 153 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 212

Query: 210 IHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQV------EGMISNY 260
           + EA  +F+ + +R   DV+S  +I+S + +      A++LF K+ +          S+ 
Sbjct: 213 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 272

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           ++  ++L A   L A+   K+VH + +R      V + N+LID Y+KCG +  + +VF+ 
Sbjct: 273 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 332

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + V+SWNAM+ GYS+ G      ELF  MR+EN +  D VT+ AV++G S  G    
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN-IPLDVVTWTAVIAGYSQRGCSHE 391

Query: 381 GLAVFHEIV 389
            L +F +++
Sbjct: 392 ALNLFRQMI 400



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L   ++  Y  CG+  Y+  V + ++    + WN ++  + K G     + +   M    
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 357 KVKPDSVTYLAVLSGCSHGGMED-RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +PD  T   VL  C  G +   R  + FH ++ C +GFE  +     +V M  R G +
Sbjct: 158 -TRPDHFTLPHVLKAC--GELPSYRCGSAFHGLI-CCNGFESNVFICNALVAMYSRCGSL 213

Query: 416 GEA 418
            EA
Sbjct: 214 EEA 216


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/664 (38%), Positives = 380/664 (57%), Gaps = 71/664 (10%)

Query: 40  GQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           GQ  KA+    EM   G+E        +L +    R L  G++VH+ ++K   R  V + 
Sbjct: 125 GQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVS 184

Query: 97  TRLIVFYNKCECLSDARKMFD-------------------------------EMRERNVV 125
             L+  Y KC     A+ +FD                               +M ER++V
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           +W +MIS Y+Q+ +   AL++F +MLR S   P+ FT A+VL++CA      +G+QIHS 
Sbjct: 245 TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSH 304

Query: 185 IIKSNFE-SHIYVG--------------------------------SSLLDMYAKAGRIH 211
           I+ + F+ S I +                                 ++LLD Y K G ++
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           EA+ +F+ L +RDVV+ TA+I GY Q GL  EAI LFR +  E    N  T A++L+  S
Sbjct: 365 EAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVAS 424

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWN 330
            LA+LGHGKQ+H   ++      V + N+LI MY+K GS+T + R FD +  ER  +SW 
Sbjct: 425 SLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWT 484

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +M++  ++HG   E +ELF  M  E  ++PD +TY+ V S C+H G+ ++G   F  + D
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEG-LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             D   P + HY C+VD+ GRAG + EA EFI+ MP EP     GSLL ACRV+ N+D+G
Sbjct: 544 V-DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           +   +RL+ +EPEN+G Y  L+NLY++ G+WE+  ++R+ MK+  V K+ G SWIE+   
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +H F   D  HP + E+   +K++  + K+ GYVPD + VL+D++EE KE++L  HSEKL
Sbjct: 663 VHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKL 722

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI TP+   +R++KNLR+C DCH   KF+SK+ GR++ +RD  RFHH  +G CSC
Sbjct: 723 AIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSC 782

Query: 631 GDYW 634
            DYW
Sbjct: 783 RDYW 786



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 206/466 (44%), Gaps = 104/466 (22%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLR-GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           L L    E    LL   VN+   R   Q VH  +IK+     VYL   L+  Y+K     
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYAL 66

Query: 111 DARKMFDEMR-------------------------------ERNVVSWTAMISAYSQKAH 139
            ARK+FDEM                                +R+ VSWT MI  Y     
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQ 126

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +A+ +   M+R   EP++FT   VL S A     E GK++HS I+K     ++ V +S
Sbjct: 127 YHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNS 186

Query: 200 LLDMYAK-------------------------------AGRIHEARGVFECLPERDVVSC 228
           LL+MYAK                                G++  A   FE + ERD+V+ 
Sbjct: 187 LLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVL 287
            ++ISGY Q G D  A+++F K+  + M+S +  T ASVL+A + L  L  G+Q+HSH++
Sbjct: 247 NSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIV 306

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRR----------------------------- 316
              F+I   V+  N+LI MYS+CG +  +RR                             
Sbjct: 307 TTGFDISGIVL--NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 317 ----VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
               +FD++ +R V++W AM+VGY +HG+  E + LF  M  E + +P+S T  A+LS  
Sbjct: 365 EAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ-RPNSYTLAAMLSVA 423

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           S       G  +    V   + +   + +   ++ M  +AG +  A
Sbjct: 424 SSLASLGHGKQIHGSAVKSGEIYSVSVSN--ALITMYAKAGSITSA 467


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/624 (40%), Positives = 378/624 (60%), Gaps = 55/624 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD----- 117
            +L AC + + +   + VH + I+    P V++   LI  Y KC  + +A K+F+     
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 118 --------------------------EMRERN----VVSWTAMISAYSQKAHSFEALNLF 147
                                      MR+ N    VV+WTA+I+ YSQ+  S EALNLF
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-------LIIKSNF---ESHIYVG 197
            +M+ S + PN  T  +VL++CA    F  G +IH+       L + ++F   +  + V 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 198 SSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE- 254
           ++L+DMY+K      AR +F+ +P  ER+VV+ T +I G+AQ G   +A++LF ++  E 
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 255 -GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCGS 310
            G+  N  T + +L A + LAA+  GKQ+H++VLR   +E  +Y V  N LIDMYSKCG 
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV-ANCLIDMYSKCGD 568

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R VFD+MS+++ ISW +M+ GY  HG G E +++F+ MR+   V PD +T+L VL 
Sbjct: 569 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV-PDDITFLVVLY 627

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D+GL+ F + +    G  P  EHY C +D+L R+GR+ +A   +K+MP EPT
Sbjct: 628 ACSHCGMVDQGLSYF-DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 686

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A +  +LL ACRVH NV++ E    +L+E+  EN G+Y ++SN+YA+AGRW+DV R+R L
Sbjct: 687 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 746

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           MK+  + K PG SW++  +   +F   DRSHP+  ++ A ++ L  + K  GYVP+ +  
Sbjct: 747 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 806

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L+DVDEE+K  +L+ HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+   
Sbjct: 807 LHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDH 866

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ +RD +RFHH   G+CSCG YW
Sbjct: 867 EIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 202/420 (48%), Gaps = 59/420 (14%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           +L AC    + R G   H  +    +   V++   L+  Y++C  L +A  +FDE+ +R 
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220

Query: 123 --NVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNE----FTFATVLTSCAGAFG 174
             +V+SW +++SA+ + ++++ AL+LF +M  +  +   NE     +   +L +C     
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 280

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------- 227
               K++H   I++     ++VG++L+D YAK G +  A  VF  +  +DVVS       
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340

Query: 228 ----------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                                        TA+I+GY+Q G   EA+ LFR++   G + N
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY----------VVLQNSLIDMYSKCG 309
            VT  SVL+A + L A   G ++H++ L+  + +           +++ N+LIDMYSKC 
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 310 SLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYL 366
           S   +R +FD+  + ER V++W  M+ G++++G   + ++LF  ++ E   V P++ T  
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKNM 425
            +L  C+H      G  + H  V     +E        C++DM  + G V  A     +M
Sbjct: 521 CILMACAHLAAIRIGKQI-HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 579



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 183/369 (49%), Gaps = 33/369 (8%)

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--------------------Y 89
           A +G+++    + +LL  C +  T+    ++H  +I +                     +
Sbjct: 29  ACIGVDVYPSHFASLLKECKSANTV---HQIHQQIIASGLLSLPTPLLSVSLPALPSEPF 85

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
             P  L T ++  Y  C     A  + + +     V W  +I  + ++     A+N+  R
Sbjct: 86  ISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCR 145

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR+ T P+ FT   VL +C     +  G   H LI  + FES++++ ++L+ MY++ G 
Sbjct: 146 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 205

Query: 210 IHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQV------EGMISNY 260
           + EA  +F+ + +R   DV+S  +I+S + +      A++LF K+ +          S+ 
Sbjct: 206 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 265

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           ++  ++L A   L A+   K+VH + +R      V + N+LID Y+KCG +  + +VF+ 
Sbjct: 266 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 325

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + V+SWNAM+ GYS+ G      ELF  MR+EN +  D VT+ AV++G S  G    
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN-IPLDVVTWTAVIAGYSQRGCSHE 384

Query: 381 GLAVFHEIV 389
            L +F +++
Sbjct: 385 ALNLFRQMI 393



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L   ++  Y  CG+  Y+  V + ++    + WN ++  + K G     + +   M    
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 357 KVKPDSVTYLAVLSGCSHGGMED-RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +PD  T   VL  C  G +   R  + FH ++ C +GFE  +     +V M  R G +
Sbjct: 151 -TRPDHFTLPHVLKAC--GELPSYRCGSAFHGLI-CCNGFESNVFICNALVAMYSRCGSL 206

Query: 416 GEA 418
            EA
Sbjct: 207 EEA 209


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/541 (43%), Positives = 346/541 (63%), Gaps = 7/541 (1%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           +L   LI  Y K   L DA+ +FD+M +RNVVSWT MISAYS    + +AL   + MLR 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
              PN FT+++VL +C G F     +Q+H  IIK   +S ++V S+L+D+Y++ G +  A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
             VF+ +   D+V  ++II+G+AQ    +EA+ LF++++  G ++   T  SVL A +GL
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           A L  G+QVH HVL+++    ++L N+L+DMY KCGSL  +  VF  M E+ VISW+ M+
Sbjct: 178 ALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            G +++G  +E ++LF  M+    +KP+ VT + VL  CSH G+ + GL  FH + +   
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLG-IKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELF- 293

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G +P  EHYGC++D+LGRAGR+ EA++ I  M  EP A    +LL ACRVH NVD+    
Sbjct: 294 GIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHA 353

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++++ ++P++AG YV+LSN+YA+  RW DV  VR  M  + + K+PG SWIE+ + +H 
Sbjct: 354 AKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHA 413

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F   DRSHP   E++ ++ QL  K    GYVPD + VL D++ EQ +  L  HSEKLA+ 
Sbjct: 414 FILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIV 473

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P G  IR+ KNLRIC DCH F K ++K+  R + +RD  R+HH  +G CSCGD+
Sbjct: 474 FGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDF 533

Query: 634 W 634
           W
Sbjct: 534 W 534



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N +  + L+ M   G+      Y ++L AC     LR   ++H  +IK      V++R+ 
Sbjct: 47  NDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSA 103

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y++   L +A ++FDEM   ++V W+++I+ ++Q +   EAL LF RM R+     
Sbjct: 104 LIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQ 163

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           + T  +VL +C G    ELG+Q+H  ++K  ++  + + ++LLDMY K G + +A  VF 
Sbjct: 164 QTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFV 221

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + E+DV+S + +I+G AQ G  +EA++LF  ++V G+  NYVT   VL A S    +  
Sbjct: 222 RMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEE 281

Query: 279 G-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           G    HS    F I         +ID+  + G L+ +  + + M  E   ++W A+L
Sbjct: 282 GLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALL 338


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/606 (40%), Positives = 365/606 (60%), Gaps = 14/606 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q   A   M  L L      +   + +C +   L  G+++H       Y   +++ + LI
Sbjct: 69  QALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALI 128

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNE 159
             Y+KC  L+DARK+FDE+ ERNVVSWT+MIS Y Q   + EA+ LF   L  D T+ +E
Sbjct: 129 DMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDE 188

Query: 160 FT----------FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
                          V+++CA      + + +H L +K  FE  + VG++L+D YAK G 
Sbjct: 189 IVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGE 248

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           I  +R VF+ + E DV S  ++I+ YAQ GL  EA  LF  +   G +  N VT ++VL 
Sbjct: 249 ISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLL 308

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +   AL  GK +H  V++ E+   +V+  S++DMY KCG +  +R+ FD +  + V S
Sbjct: 309 ACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKS 368

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W  M+ GY  HG G+E +++F  M     +KP+ +T+++VL+ CSH G+   G   F+++
Sbjct: 369 WTVMVAGYGMHGHGKEAMKVFYEMIRCG-IKPNYITFVSVLAACSHAGLLKEGWHWFNKM 427

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             C+   EP IEHY C+VD+LGRAG + EA   I+ M  +P   + GSLLGACR+H NV+
Sbjct: 428 -KCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVE 486

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           +GE   ++L +++P N G YV+LSN+YA AGRW+DV R+R LMK   + K PG S +E  
Sbjct: 487 LGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHK 546

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F   D+ HP  E++   + +L+VK +E GY+P+++ VLYDVD E+K  VL  HSE
Sbjct: 547 GRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSE 606

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FG++ +  G+ I++IKNLRIC DCH   K +SK+  R++ +RD  RFHH  +G C
Sbjct: 607 KLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLC 666

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 667 SCGDYW 672



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 173/318 (54%), Gaps = 14/318 (4%)

Query: 110 SDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           ++ R MF +  ++ +V SW ++I+ +++   S +AL  F  M +    PN  TF   + S
Sbjct: 36  ANLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKS 95

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+  +    GKQIH       + S I+V S+L+DMY+K G +++AR +F+ +PER+VVS 
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW 155

Query: 229 TAIISGYAQLGLDEEAIELFR-----------KLQVEGMISNYVTYASVLTALSGLAALG 277
           T++ISGY Q     EA+ LF+           ++   G+  + V    V++A + +    
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKS 215

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
             + VH   ++      + + N+L+D Y+KCG ++ SR+VFD M E  V SWN+++  Y+
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++G+  E   LF+ M +  +V+ ++VT  AVL  C+H G    G  +  ++V  K   E 
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVV--KMELED 333

Query: 398 EIEHYGCVVDMLGRAGRV 415
            +     +VDM  + GRV
Sbjct: 334 NLVVGTSIVDMYCKCGRV 351


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/621 (39%), Positives = 380/621 (61%), Gaps = 39/621 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M +LGL      +  LL +C   +  R GQ++H H++K  Y   +Y+ T LI  Y +   
Sbjct: 94  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 153

Query: 109 LSDARK-------------------------------MFDEMRERNVVSWTAMISAYSQK 137
           L DARK                               MFDE+  ++VVSW AMIS Y++ 
Sbjct: 154 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 213

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
            ++ EAL LF  M++++  P+E T  +V+++CA +   ELG+Q+HS I    F S++ + 
Sbjct: 214 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D+Y K G +  A G+FE L  +DV+S   +I GY  + L +EA+ LF+++   G  
Sbjct: 274 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTYSR 315
            N VT  S+L A + L A+  G+ +H ++ +    + +    + SLIDMY+KCG +  ++
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 393

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VFD++  R++ SWNAM+ G++ HG      ++F+ MR+ N+++PD +T++ +LS CSH 
Sbjct: 394 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK-NEIEPDDITFVGLLSACSHS 452

Query: 376 GMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           GM D G  +F  +   K+ ++  P++EHYGC++D+LG +G   EA E I  M  EP   I
Sbjct: 453 GMLDLGRHIFRSM---KEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 509

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             SLL AC+++ NV++GE   Q L++IEP+N G+YV+LSN+YA+AGRW +V ++R L+ +
Sbjct: 510 WCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 569

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S VL +
Sbjct: 570 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 629

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           ++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y R++ 
Sbjct: 630 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 689

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
            RD+ RFHH  +G CSC DYW
Sbjct: 690 ARDRTRFHHFRDGVCSCNDYW 710



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 216/439 (49%), Gaps = 43/439 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEM 119
           +LL+ C   +TL+  + +HA MIKT      Y  ++LI   V     + L  A  +F+ +
Sbjct: 7   SLLHNC---KTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +E N++ W  M   ++  +    AL L++ M+     PN +TF  +L SCA +  F  G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI-------- 231
           QIH  ++K  ++  +YV +SL+ MY + GR+ +AR VF+    RDVVS TA+        
Sbjct: 124 QIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183

Query: 232 -----------------------ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                                  ISGYA+ G ++EA+ELF+++    +  +  T  SV++
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +  A++  G+QVHS +      S + + N+LID+Y KCG +  +  +F+ +S + VIS
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 303

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN ++ GY+   + +E + LF  M    +  P+ VT L++L  C+H G  + G  +   I
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYI 362

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEA---LEFIKNMPFEPTAAILGSLLGACRVHY 445
                G      H   ++DM  + G +  A    + I N       A++       R + 
Sbjct: 363 NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 446 NVDIGEFVGQRLMEIEPEN 464
             DI  F   R  EIEP++
Sbjct: 423 AFDI--FSRMRKNEIEPDD 439


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/603 (40%), Positives = 368/603 (61%), Gaps = 6/603 (0%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFEEYD-TLLN---ACVNQRTLRGGQRVHAHMIKTCYRP 91
           LC+ G + +A      + ++   E  + T+LN   AC+    LR  + +H + I+  ++ 
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
              +    +  Y KC  L  A ++F  M  + V SW A+I   +Q     +ALNL+I+M 
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
            S   P+ FT  ++L + A       GK++H  +++   E   ++G SLL +Y   G   
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR +F+ + E+  VS  A+ISGY+Q GL E+A+ LFRKL  +G   + +   SVL A S
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACS 449

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
             +AL  GK+ H + L+  +   V +  S IDMY+K G +  SR VFD +  + + SWNA
Sbjct: 450 QQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNA 509

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++  Y  HG G E +ELF  MR+  ++ PD  T++ +L+ CSH G+ + GL  F+E+ + 
Sbjct: 510 IIAAYGVHGDGEESIELFERMRKVGQM-PDGFTFIGILTVCSHAGLVEEGLKYFNEMQNF 568

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G EP++EHY CV+DMLGRAGR+ +AL  +  MP +P + +  SLL  CR    ++IG+
Sbjct: 569 H-GIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQ 627

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            V ++L+E+EP+N  NYV LSNLYA +GRW+DV RVR+++K+  + KD G SWIEL   +
Sbjct: 628 IVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKV 687

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H+F A D   P  +E+S   ++L  K  + GY P+ S VL+DVDEE+K + L GHSEKLA
Sbjct: 688 HSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLA 747

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+ T +G  +R+ KNLRICVDCHN +KF+S+V GR++ +RD  RFHH  +G CSCG
Sbjct: 748 ICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCG 807

Query: 632 DYW 634
           DYW
Sbjct: 808 DYW 810



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 169/315 (53%), Gaps = 6/315 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L  C  +  ++ G R+H   +K      V +   L+  Y+KC  L++A+ +FD+   +
Sbjct: 139 TVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           N VSW  MI     K + FEA NLF  M ++ D E NE T   +L +C         K++
Sbjct: 199 NAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKEL 258

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H   I+  F+    V +  +  YAK G +  A  VF  +  + V S  A+I G AQ G  
Sbjct: 259 HGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDP 318

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQN 299
            +A+ L+ ++   G++ ++ T  S+L A + L +L +GK+VH  VLR   EI S++ +  
Sbjct: 319 RKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGI-- 376

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL+ +Y  CG  + +R +FD M E++ +SWNAM+ GYS++G+  + + LF  +  +   +
Sbjct: 377 SLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDG-FQ 435

Query: 360 PDSVTYLAVLSGCSH 374
           P  +  ++VL  CS 
Sbjct: 436 PSDIAVVSVLGACSQ 450



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 163/317 (51%), Gaps = 4/317 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++ AC        G+ +H  +IK      V++   LI  Y K   +  A K+F  M 
Sbjct: 34  FPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMP 93

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELG 178
            RN+VSW ++IS +S+   S +  ++ + M+  +    P+  T  TVL  CA     ++G
Sbjct: 94  VRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMG 153

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            +IH L +K      + V +SL+DMY+K G + EA+ +F+    ++ VS   +I G    
Sbjct: 154 IRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTK 213

Query: 239 GLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           G   EA  LFR++Q++  I  N VT  ++L A   ++ L   K++H + +R       ++
Sbjct: 214 GYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELV 273

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N  +  Y+KCG L  + RVF +M  +TV SWNA++ G +++G  R+ + L+  M     
Sbjct: 274 ANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGL 333

Query: 358 VKPDSVTYLAVLSGCSH 374
           V PD  T  ++L   +H
Sbjct: 334 V-PDWFTIGSLLLASAH 349



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 134/235 (57%), Gaps = 5/235 (2%)

Query: 142 EALNLFIRMLRSDTEPN--EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
           +A+++F++++ +DTE N   FTF  V+ +C G+    LG+ IH ++IK      ++VG++
Sbjct: 13  DAIDMFVKLI-TDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNA 71

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV--EGMI 257
           L+ MY K G +  A  VF  +P R++VS  +IISG+++ G  ++  ++  ++    EG++
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T  +VL   +    +  G ++H   ++  +   V + NSL+DMYSKCG LT ++ +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           FD  + +  +SWN M+ G    G   E   LF  M+ +  ++ + VT L +L  C
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 368/586 (62%), Gaps = 4/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     + T+L AC +      G++VH  ++K+ +   VY+++ L+  Y KC  
Sbjct: 256 MHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGD 315

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L +A+ M + M + +VVSW +++  + +     EAL LF  M   + + +++TF +VL  
Sbjct: 316 LKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNC 375

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C    G    K +H LIIK+ FE++  V ++L+DMYAK G +  A  VFE + E+DV+S 
Sbjct: 376 CV--VGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISW 433

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T++++GYAQ    EE++++F  ++V G+  +    AS+L+A + L  L  GKQVH   ++
Sbjct: 434 TSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIK 493

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +     + NSL+ MY+KCG L  +  +F +M  + VI+W A++VGY+++G GR  ++ 
Sbjct: 494 SGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKF 553

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           ++ M      +PD +T++ +L  CSH G+ D G   F ++     G +P  EHY C++D+
Sbjct: 554 YDAMVSSG-TRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVY-GIKPGPEHYACMIDL 611

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
            GR+G++ EA + +  M  +P A +  SLL ACRVH N+++ E     L E+EP NA  Y
Sbjct: 612 FGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPY 671

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+Y+++ +W DV ++R+LMK K + K+PG SW+E++  ++TF + DR HP   E+ 
Sbjct: 672 VMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIY 731

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            K+ ++ ++ KEAGYVPDMS  L+D+D+E KE  L  HSEKLA+ FGL+  P  APIR+ 
Sbjct: 732 TKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIF 791

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH+  K++S+V+ R + LRD N FHH  EG CSCGDYW
Sbjct: 792 KNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 214/402 (53%), Gaps = 18/402 (4%)

Query: 47  IEMATLGLEMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           +E   L   MR E +        ++L  C +   ++ G+ +H  ++K  +   V++ T L
Sbjct: 144 VEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGL 203

Query: 100 IVFYNKCECLSDARKMFD--EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
           +  Y KC+C+S+A  +F   E   +N V WTAM++ Y+Q    ++A+  F  M     E 
Sbjct: 204 VDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVEC 263

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N++TF T+LT+C+       G+Q+H  I+KS F S++YV S+L+DMYAK G +  A+ + 
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           E + + DVVS  +++ G+ + GL+EEA+ LF+ +    M  +  T+ SVL     +    
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSI 381

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           + K VH  +++    +Y ++ N+L+DMY+K G +  +  VF+ M E+ VISW +++ GY+
Sbjct: 382 NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA 441

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++    E +++F  MR    V PD     ++LS C+   + + G  V  + +  K G   
Sbjct: 442 QNNSHEESLKIFCDMRVTG-VNPDQFIVASILSACAELTLLEFGKQVHLDFI--KSGLRW 498

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP----TAAILG 435
               Y  +V M  + G + +A     +M  +     TA I+G
Sbjct: 499 SQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVG 540



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 190/366 (51%), Gaps = 38/366 (10%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH------------- 139
           +Y   +L+   +K   ++DARK+FD+M +++  SW  MIS+Y                  
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 140 ------------------SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
                               EA +LF  M     + ++FT  +VL  C+     + G+ I
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL--PERDVVSCTAIISGYAQLG 239
           H  ++K+ FE +++V + L+DMYAK   + EA  +F+ L    ++ V  TA+++GYAQ G
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              +A+E FR +  +G+  N  T+ ++LTA S + A   G+QVH  +++    S V +Q+
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+DMY+KCG L  ++ + + M +  V+SWN+++VG+ +HG+  E + LF  M   N +K
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN-MK 363

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D  T+ +VL+ C  G +  + +   H ++  K GFE        +VDM  + G +  A 
Sbjct: 364 IDDYTFPSVLNCCVVGSINPKSV---HGLI-IKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 420 EFIKNM 425
              + M
Sbjct: 420 TVFEKM 425



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 38/297 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS----- 233
           + IH+    S +ES IY  + LL+  +K+G++++AR +F+ +P++D  S   +IS     
Sbjct: 52  RSIHTTTAAS-YES-IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNV 109

Query: 234 --------------------------GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                     GY + G   EA +LFR +++EG  ++  T  SVL
Sbjct: 110 GRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVL 169

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERT 325
              S L  +  G+ +H  V++      V +   L+DMY+KC  ++ +  +F  +    + 
Sbjct: 170 RVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKN 229

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
            + W AM+ GY+++G G + VE F  M  +  V+ +  T+  +L+ CS       G  V 
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQG-VECNQYTFPTILTACSSVLARCFGEQVH 288

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
             IV  K GF   +     +VDM  + G +  A   ++ M  +   +    ++G  R
Sbjct: 289 GFIV--KSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 372/578 (64%), Gaps = 11/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++  C N + LR  +++H  ++K  +     +RT L+V Y+KC  + DA ++F E+ 
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357

Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              NVVSWTAMIS + Q     EA++LF  M R    PNEFT++ +LT    A       
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT----ALPVISPS 413

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H+ ++K+N+E    VG++LLD Y K G++ EA  VF  + ++D+V+ +A+++GYAQ G
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALGHGKQVHSHVLRFEIPSYVVLQ 298
             E AI++F +L   G+  N  T++S+L   +   A++G GKQ H   ++  + S + + 
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+ MY+K G++  +  VF    E+ ++SWN+M+ GY++HG   + +++F  M++  KV
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR-KV 592

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           K D VT++ V + C+H G+ + G   F  +V DCK    P  EH  C+VD+  RAG++ +
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK--IAPTKEHNSCMVDLYSRAGQLEK 650

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A++ I+NMP    + I  ++L ACRVH   ++G    ++++ ++PE++  YV+LSN+YA 
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           +G W++  +VR+LM E+ V K+PG SWIE+    ++F A DRSHP+++++  K++ LS +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+ GY PD S VL D+D+E KE VL  HSE+LA+ FGLI TP+G+P+ +IKNLR+C DC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHI-VEGTCSCGDYW 634
           H   K ++K+  R++ +RD NRFHH   +G CSCGD+W
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 181/321 (56%), Gaps = 2/321 (0%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           LG+EM    + ++L           G+++H   IK  +   V + T L+  Y K     D
Sbjct: 87  LGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD 146

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            RK+FDEM+ERNVV+WT +IS Y++ + + E L LF+RM    T+PN FTFA  L   A 
Sbjct: 147 GRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAE 206

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 G Q+H++++K+  +  I V +SL+++Y K G + +AR +F+    + VV+  ++
Sbjct: 207 EGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSM 266

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ISGYA  GLD EA+ +F  +++  +  +  ++ASV+   + L  L   +Q+H  V+++  
Sbjct: 267 ISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGF 326

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFN 350
                ++ +L+  YSKC ++  + R+F  +     V+SW AM+ G+ ++    E V+LF+
Sbjct: 327 LFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFS 386

Query: 351 LMREENKVKPDSVTYLAVLSG 371
            M+ +  V+P+  TY  +L+ 
Sbjct: 387 EMKRKG-VRPNEFTYSVILTA 406



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 153/266 (57%), Gaps = 1/266 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L +A  +FD+   R+  S+ +++  +S+   + EA  LF+ + R   E +   F++VL  
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A       G+Q+H   IK  F   + VG+SL+D Y K     + R VF+ + ER+VV+ 
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T +ISGYA+  +++E + LF ++Q EG   N  T+A+ L  L+     G G QVH+ V++
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   + + NSLI++Y KCG++  +R +FD    ++V++WN+M+ GY+ +G+  E + +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSH 374
           F  MR  N V+    ++ +V+  C++
Sbjct: 283 FYSMR-LNYVRLSESSFASVIKLCAN 307



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 164/300 (54%), Gaps = 10/300 (3%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G +VH  ++K      + +   LI  Y KC  +  AR +FD+   ++VV+W +MIS Y+ 
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL +F  M  +    +E +FA+V+  CA        +Q+H  ++K  F     +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 197 GSSLLDMYAKAGRIHEARGVFE---CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            ++L+  Y+K   + +A  +F+   C+   +VVS TA+ISG+ Q    EEA++LF +++ 
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVG--NVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G+  N  TY+ +LTAL  ++      +VH+ V++        +  +L+D Y K G +  
Sbjct: 391 KGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEE 446

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + +VF  + ++ +++W+AML GY++ G     +++F  +  +  +KP+  T+ ++L+ C+
Sbjct: 447 AAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGEL-TKGGIKPNEFTFSSILNVCA 505



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%), Gaps = 3/212 (1%)

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
           + R++ A  +F+  P RD  S  +++ G+++ G  +EA  LF  +   GM  +   ++SV
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L   + L     G+Q+H   ++F     V +  SL+D Y K  +    R+VFD M ER V
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           ++W  ++ GY+++ M  EV+ LF  M+ E   +P+S T+ A L   +  G+  RGL V H
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLAEEGVGGRGLQV-H 217

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            +V  K+G +  I     ++++  + G V +A
Sbjct: 218 TVV-VKNGLDKTIPVSNSLINLYLKCGNVRKA 248


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/579 (40%), Positives = 360/579 (62%), Gaps = 3/579 (0%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           R      LL  C   R+  GG+  HA +I+      +     LI  Y+KC  +  ARK F
Sbjct: 42  RVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKF 101

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +EM  +++VSW  +I A +Q A   EAL L I+M R  T  NEFT ++VL +CA      
Sbjct: 102 NEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAIL 161

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
              Q+H+  IK+  +S+ +VG++LL +YAK   I +A  +FE +PE++ V+ +++++GY 
Sbjct: 162 ECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYV 221

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q G  EEA+ +FR  Q+ G   +    +S ++A +GLA L  GKQVH+   +    S + 
Sbjct: 222 QNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIY 281

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           + +SLIDMY+KCG +  +  VF  + E R+++ WNAM+ G+++H    E + LF  M++ 
Sbjct: 282 VSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQR 341

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
               PD VTY+ VL+ CSH G+ + G   F  +V  +    P + HY C++D+LGRAG V
Sbjct: 342 GFF-PDDVTYVCVLNACSHMGLHEEGQKYFDLMVR-QHNLSPSVLHYSCMIDILGRAGLV 399

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            +A + I+ MPF  T+++ GSLL +C+++ N++  E   + L E+EP NAGN+++L+N+Y
Sbjct: 400 HKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIY 459

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A+  +W++V R R+L++E  V K+ G SWIE+   +H+F   +R+HP  +++ AK+  L 
Sbjct: 460 AANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLV 519

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           V+ K+  Y  D S  L+DV+E +K+ +L  HSEKLA+TFGL+  P   PIR+IKNLRIC 
Sbjct: 520 VELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICG 579

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH F K VSK   R++ +RD NRFHH  +G CSCG++W
Sbjct: 580 DCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 157/302 (51%), Gaps = 7/302 (2%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K LI+M   G         ++L  C  +  +    ++HA  IK       ++ T L+  Y
Sbjct: 130 KLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVY 189

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF--IRMLRSDTEPNEFT 161
            KC  + DA +MF+ M E+N V+W++M++ Y Q     EAL +F   +++  D +P  F 
Sbjct: 190 AKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDP--FM 247

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            ++ +++CAG      GKQ+H++  KS F S+IYV SSL+DMYAK G I EA  VF+ + 
Sbjct: 248 ISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVL 307

Query: 222 E-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           E R +V   A+ISG+A+     EA+ LF K+Q  G   + VTY  VL A S +     G+
Sbjct: 308 EVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQ 367

Query: 281 QVHSHVLRFEIPSYVVLQNS-LIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSK 338
           +    ++R    S  VL  S +ID+  + G +  +  + + M      S W ++L     
Sbjct: 368 KYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKI 427

Query: 339 HG 340
           +G
Sbjct: 428 YG 429


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/601 (39%), Positives = 367/601 (61%), Gaps = 7/601 (1%)

Query: 38  SNGQLTKALIEMATL----GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPV 93
           S   + +  +EM  L     L+  F    ++L A    R +R G+ +H + ++  +   V
Sbjct: 212 SQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLV 271

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
            + T L+  Y KC  L  AR +FD M ERNVVSW +MI AY Q  +  EA+ +F +ML  
Sbjct: 272 NIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDE 331

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
             +P + +    L +CA     E G+ IH L ++   + ++ V +SL+ MY K   +  A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
             +F  L  R +VS  A+I G+AQ G   EA+  F ++Q   +  +  TY SV+TA++ L
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAEL 451

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +   H K +H  V+R  +   V +  +L+DMY+KCG++  +R +FD MSER V +WNAM+
Sbjct: 452 SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY  HG+G+  +ELF  M ++  ++P+ VT+L+V+S CSH G+ + GL  FH + +   
Sbjct: 512 DGYGTHGIGKAALELFEEM-QKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKE-NY 569

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
             EP ++HYG +VD+LGRAGR+ EA +FI  MP +P   + G++LGAC++H NV+  E V
Sbjct: 570 SIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKV 629

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            +RL E+ PE+ G +V+L+N+Y +A  WE V +VR  M  + + K PG S +E+   +H+
Sbjct: 630 AERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F +   +HP  +++ A +++L  + KEAGYVPD + +L  ++++ KE++L  HSEKLA++
Sbjct: 690 FFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAIS 748

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+ T  G  I V KNLR+C DCHN  K++S V GR++ +RD  RFHH   G CSCGDY
Sbjct: 749 FGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDY 808

Query: 634 W 634
           W
Sbjct: 809 W 809



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 238/486 (48%), Gaps = 40/486 (8%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           LK       L KAL   + M    +E     +  LL  C ++  LR G+ +H  ++K+ +
Sbjct: 107 LKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF 166

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              ++  T L   Y KC  + +ARK+FD M ER++VSW  +++ YSQ   +  AL +   
Sbjct: 167 SLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNL 226

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M   + +P+  T  +VL + +      +GK+IH   +++ F+S + + ++L+DMYAK G 
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGS 286

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  AR +F+ + ER+VVS  ++I  Y Q    +EA+ +F+K+  EG+    V+    L A
Sbjct: 287 LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHA 346

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L  L  G+ +H   +  E+   V + NSLI MY KC  +  +  +F  +  RT++SW
Sbjct: 347 CADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSW 406

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----------HGGME 378
           NAM++G++++G   E +  F+ M+    VKPD+ TY++V++  +           HG + 
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQART-VKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 379 ----DRGLAVFHEIVD--CKDGF------------EPEIEHYGCVVDMLGRAGRVGEALE 420
               D+ + V   +VD   K G             E  +  +  ++D  G  G    ALE
Sbjct: 466 RNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALE 525

Query: 421 FIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNL 474
             + M      P      S++ AC     V+ G      + E   IEP +  +Y  + +L
Sbjct: 526 LFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEP-SMDHYGAMVDL 584

Query: 475 YASAGR 480
              AGR
Sbjct: 585 LGRAGR 590



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 183/322 (56%), Gaps = 12/322 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVY----LRTRLIVFYNKCECLSDARKMFDEM 119
           LL  C + + LR       H++   ++  +Y     +T+L+  + +   + +A ++F+ +
Sbjct: 43  LLERCSSLKELR-------HILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPI 95

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ++  V +  M+  +++ +   +AL  F+RM   + EP  + F  +L  C       +GK
Sbjct: 96  DKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGK 155

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH L++KS F   ++  + L +MYAK  ++HEAR VF+ +PERD+VS   I++GY+Q G
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNG 215

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           +   A+E+   +  E +  +++T  SVL A+S L  +  GK++H + +R    S V +  
Sbjct: 216 MARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIAT 275

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+DMY+KCGSL  +R +FD M ER V+SWN+M+  Y ++   +E + +F  M +E  VK
Sbjct: 276 ALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG-VK 334

Query: 360 PDSVTYLAVLSGCSHGGMEDRG 381
           P  V+ +  L  C+  G  +RG
Sbjct: 335 PTDVSVMGALHACADLGDLERG 356


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 374/614 (60%), Gaps = 14/614 (2%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G   +AL+    M  L L      +   + AC +   +  G++ H       Y
Sbjct: 48  IADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGY 107

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +  +++ + LIV Y+ C  L DARK+FDE+ +R++VSWT+MI  Y    ++ +A++LF  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 150 MLRSDTEPNEFTF------ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           +L  + + ++  F       +V+++C+      L + IHS +IK  F+  + VG++LLD 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227

Query: 204 YAKAGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NY 260
           YAK G   +  AR +F+ + ++D VS  +I+S YAQ G+  EA E+FR+L    +++ N 
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA 287

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +T ++VL A+S   AL  GK +H  V+R  +   V++  S+IDMY KCG +  +R+ FD 
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDR 347

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + V SW AM+ GY  HG   + +ELF  M +   V+P+ +T+++VL+ CSH G+   
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-VRPNYITFVSVLAACSHAGLHVE 406

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G   F+ +   + G EP +EHYGC+VD+LGRAG + +A + I+ M  +P + I  SLL A
Sbjct: 407 GWRWFNAM-KGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR+H NV++ E    RL E++  N G Y++LS++YA AGRW+DV RVR +MK + + K P
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G S +EL+  +H F   D  HP RE++   + +L+ K  EAGYV + S V +DVDEE+KE
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
             L  HSEKLA+ FG++ T  G+ + V+KNLR+C DCHN  K +SK+  R+  +RD  RF
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRF 645

Query: 621 HHIVEGTCSCGDYW 634
           HH  +G CSCGDYW
Sbjct: 646 HHFKDGGCSCGDYW 659



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 170/324 (52%), Gaps = 13/324 (4%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V SW ++I+  ++   S EAL  F  M +    P   +F   + +C+  F    GKQ H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                  ++S I+V S+L+ MY+  G++ +AR VF+ +P+RD+VS T++I GY   G   
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 243 EAIELFRKLQV------EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +A+ LF+ L V      + M  + +   SV++A S + A G  + +HS V++      V 
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219

Query: 297 LQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + N+L+D Y+K   G +  +R++FD + ++  +S+N+++  Y++ GM  E  E+F  + +
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V  +++T   VL   SH G    G  +  +++  + G E ++     ++DM  + GR
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI--RMGLEDDVIVGTSIIDMYCKCGR 337

Query: 415 VG---EALEFIKNMPFEPTAAILG 435
           V    +A + +KN       A++ 
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIA 361


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/532 (41%), Positives = 351/532 (65%), Gaps = 3/532 (0%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y KC  +SDAR +FD+M  R+VVSWT +I+ Y+Q     EA+ L   MLR+   PN FTF
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            ++L +     G  +G+Q+H+L +K N++  +YVGS+LLDMYA+  ++  A  VF+ L  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           ++ VS  A+I+G+A+    E  +  F ++Q  G  + + TY+S+ +A + + AL  G+ V
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H+H+++        + N+++ MY+K GS+  +R+VFD M +R +++WN ML   +++G+G
Sbjct: 182 HAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG 241

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           +E V  F  +R+   ++ + +T+L+VL+ CSHGG+   G   F  + D     +PEI+HY
Sbjct: 242 KEAVAHFEEIRKCG-IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYN--VQPEIDHY 298

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
              VD+LGRAG + EAL F+  MP EPTAA+ G+LLGACR+H N  +G++    + E++P
Sbjct: 299 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDP 358

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           ++ G  V+L N+YAS G+W D  RVR++MK   V K+P  SW++++  +H F A D +HP
Sbjct: 359 DDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHP 418

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              ++    ++++++ K+AGYVP+ + VL  ++E+++E  L  HSEK+AL F LI  P G
Sbjct: 419 KSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAG 478

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           A IR++KN+RIC DCH+  K+VSKV+ R++ +RD NRFHH  EG+CSCGDYW
Sbjct: 479 ASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 141/258 (54%), Gaps = 1/258 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+++HA  +K  +   VY+ + L+  Y +CE +  A  +FD +  +N VSW A+I+ +++
Sbjct: 77  GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 136

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
           KA     L  F  M R+      FT++++ ++ A     E G+ +H+ +IKS  +   +V
Sbjct: 137 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 196

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G+++L MYAK+G + +AR VF+ + +RD+V+   +++  AQ GL +EA+  F +++  G+
Sbjct: 197 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI 256

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR- 315
             N +T+ SVLTA S    +  GK     +  + +   +    S +D+  + G L  +  
Sbjct: 257 QLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALI 316

Query: 316 RVFDNMSERTVISWNAML 333
            VF    E T   W A+L
Sbjct: 317 FVFKMPMEPTAAVWGALL 334



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY K G + +AR VF+ +P RDVVS T +I+GYAQ  +  EAI L   +       N  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           + S+L A         G+Q+H+  +++     V + ++L+DMY++C  +  +  VFD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            +  +SWNA++ G+++   G   +  F  M + N       TY ++ S  +  G  ++G 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQGR 179

Query: 383 AVFHEIV 389
            V   ++
Sbjct: 180 WVHAHLI 186



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G       Y ++ +A      L  G+ VHAH+IK+  +   ++   ++  Y K  
Sbjct: 149 EMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSG 208

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+FD M +R++V+W  M++A +Q     EA+  F  + +   + N+ TF +VLT
Sbjct: 209 SMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLT 268

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GK    ++   N +  I    S +D+  +AG + EA
Sbjct: 269 ACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEA 314


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 355/572 (62%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L A  +   L  G+ +H + I+  +   V + T L   Y+KC  +  AR +FD M ++
Sbjct: 253 TVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQK 312

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW +M+  Y Q     +A+ +F +ML    +P   T    L +CA     E GK +H
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + + N  S I V +SL+ MY+K  R+  A  +F  L  R  VS  A+I GYAQ G   
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  F +++  GM  +  T  SV+ AL+ L+   H K +H  ++R  +   + +  +L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG++  +R++FD +S+R VI+WNAM+ GY  HG+GR  ++LF+ M+ +  V+P+ 
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMK-KGAVEPND 551

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +TYL+V+S CSH G+ D GL  F  +     G EP ++HYG +VD+LGRAGR+ EA +FI
Sbjct: 552 ITYLSVISACSHSGLVDEGLRHFKSMKQ-DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFI 610

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           +NMP  P   + G++LGAC++H N+++GE   ++L E+ P+  G +V+L+N+YAS  +W 
Sbjct: 611 ENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWS 670

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  VR+ M++K + K PG S +EL   +H+F++   +HP  + + A +++L  + K AG
Sbjct: 671 KVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAG 730

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD + +L DV+++ +E++L  HSEKLA+ FGL+ T  G  I V KNLR+C DCHN  K
Sbjct: 731 YVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATK 789

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++S V GR++ +RD  RFHH   G CSCGDYW
Sbjct: 790 YISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 187/344 (54%), Gaps = 12/344 (3%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMI 85
           LK    N  L  AL  +      MR+++       +  LL  C +   L+ G+ +H  +I
Sbjct: 119 LKGYAKNSSLETALAFLC----RMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
              +   V+  T ++  Y KC  + DA KMFD M ER++VSW  +I+ +SQ   + +AL 
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           L +RM      P+  T  TVL + A      +GK IH   I++ F   + + ++L DMY+
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G +  AR +F+ + ++ VVS  +++ GY Q G  E+AI +F K+  EG+    VT   
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            L A + L  L  GK VH  V +  + S + + NSLI MYSKC  +  +  +F+N++ RT
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +SWNAM++GY+++G   E +  F+ M+    +KPDS T ++V+
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLG-MKPDSFTMVSVI 457



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 195/362 (53%), Gaps = 6/362 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C + + L    ++   +IK         +T+L+  ++K   +++A ++F+ + ++ 
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
              +  M+  Y++ +    AL    RM   D +P  + F  +L  C      + GK+IH 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +I ++F ++++  + +++MYAK  +I +A  +F+ +PERD+VS   II+G++Q G  ++
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+EL  ++Q EG   + +T  +VL A + +  L  GK +H + +R      V +  +L D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+  +R +FD M ++TV+SWN+M+ GY ++G   + + +F  M EE  + P  V
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG-IDPTGV 350

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T +  L  C+  G  +RG  V H+ VD +     +I     ++ M  +  RV  A +   
Sbjct: 351 TIMEALHACADLGDLERGKFV-HKFVD-QLNLGSDISVMNSLISMYSKCKRVDIASDIFN 408

Query: 424 NM 425
           N+
Sbjct: 409 NL 410



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 13/296 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG++++AL    EM +LG++       +++ A       R  + +H  +I++C    +++
Sbjct: 428 NGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFV 487

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T L+  Y+KC  +  ARK+FD + +R+V++W AMI  Y        AL+LF +M +   
Sbjct: 488 TTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAV 547

Query: 156 EPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           EPN+ T+ +V+++C+ +   + G +   S+      E  +    +++D+  +AGRI EA 
Sbjct: 548 EPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAW 607

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEE-----AIELFRKLQVEGMISNYVTYASVLTA 269
              E +P    ++    + G  ++  + E     A +LF     EG    +V  A++  +
Sbjct: 608 DFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEG--GYHVLLANIYAS 665

Query: 270 LSGLAALGHGKQVHSHVLRFEIP--SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            S  + +   ++        + P  S V L+N +   YS   +   S+R++  + E
Sbjct: 666 TSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEE 721


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 366/602 (60%), Gaps = 10/602 (1%)

Query: 38  SNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   K L    +M  LG+        +++  C N   L  G+ +H + IK  +   + 
Sbjct: 228 SNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELT 287

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L   L+  Y+K   L+ A ++F+ M ER+VVSWT+MI+ Y+++  S  ++ LF  M +  
Sbjct: 288 LNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEG 347

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+ FT  T+L +CA     E GK +H+ I ++  +S ++V ++L+DMYAK G + +A 
Sbjct: 348 ISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAH 407

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D+VS   +I GY++  L  EA+ LF ++Q      N +T A +L A + LA
Sbjct: 408 SVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILPACASLA 466

Query: 275 ALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           AL  G+++H H+LR  F +  +V   N+L+DMY KCG+L  +R +FD + E+ ++SW  M
Sbjct: 467 ALERGQEIHGHILRNGFSLDRHVA--NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 524

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY  HG G E +  FN MR    ++PD V+++++L  CSH G+ D G   F+ + +  
Sbjct: 525 IAGYGMHGYGSEAIAAFNEMRNSG-IEPDEVSFISILYACSHSGLLDEGWGFFNMMRN-N 582

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP+ EHY C+VD+L RAG + +A +FIK MP EP A I G+LL  CR++++V + E 
Sbjct: 583 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEK 642

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           V + + E+EPEN G YV+L+N+YA A +WE+V ++RE +  + + K+PG SWIE+   +H
Sbjct: 643 VAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVH 702

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F   D SHP+  ++   +K+   + KE G+ P M   L   D+ +KE  L GHSEK+A+
Sbjct: 703 IFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAM 762

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FG++  P G  +RV KNLR+C DCH  AKF+SK+  R + LRD NRFHH  +G+CSC  
Sbjct: 763 AFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRG 822

Query: 633 YW 634
           +W
Sbjct: 823 HW 824



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 8/368 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           ARK+FDE+ +R+V+SW +MIS Y     S + L+LF +ML      +  T  +V+  C+ 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                LG+ +H   IK++F   + + + LLDMY+K+G ++ A  VFE + ER VVS T++
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+GYA+ GL + ++ LF +++ EG+  +  T  ++L A +    L +GK VH+++   ++
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S + + N+L+DMY+KCGS+  +  VF  M  + ++SWN M+ GYSK+ +  E + LF  
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M+  +  KP+S+T   +L  C+     +RG  +   I+  ++GF  +      +VDM  +
Sbjct: 444 MQYNS--KPNSITMACILPACASLAALERGQEIHGHIL--RNGFSLDRHVANALVDMYLK 499

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEIEPENAGNYVI 470
            G +G A      +P +   +    + G     Y  + I  F   R   IEP+       
Sbjct: 500 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS---F 556

Query: 471 LSNLYASA 478
           +S LYA +
Sbjct: 557 ISILYACS 564



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 52/307 (16%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG------------ 208
           T+ +VL  CA     + G++IHS+I  ++ E    +GS L+ MY   G            
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 209 -------------------------------------RIHEARGVFECLPERDVVSCTAI 231
                                                R+  AR +F+ L +RDV+S  ++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ISGY   GL E+ ++LF ++ + G+ ++  T  SV+   S    L  G+ +H + ++   
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              + L N L+DMYSK G+L  + +VF+ M ER+V+SW +M+ GY++ G+    V LF+ 
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M +E  + PD  T   +L  C+  G+ + G  V + I + K   + ++     ++DM  +
Sbjct: 343 MEKEG-ISPDIFTITTILHACACTGLLENGKDVHNYIKENK--MQSDLFVSNALMDMYAK 399

Query: 412 AGRVGEA 418
            G +G+A
Sbjct: 400 CGSMGDA 406



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 46/210 (21%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           TY SVL   + L ++  G+++HS +   ++    VL + L+ MY  CG L   RR+FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMRE------ENKVK-------PDSVTYLAV 368
           +   V  WN ++ GY+K G  RE + LF  MRE      E+  K        D +++ ++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 369 LSGCSHGGMEDRGLAVFHE----------------IVDC-----------------KDGF 395
           +SG    G+ ++GL +F +                +  C                 K  F
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             E+    C++DM  ++G +  A++  + M
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETM 312


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 371/607 (61%), Gaps = 8/607 (1%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  NG   +AL    EM   G+ M      ++L  C     +     +H ++IK   
Sbjct: 245 ISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGL 304

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   LI  Y K   L DA+K+F +M  R+VVSW ++I+AY Q      A   F +
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFK 364

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAG 208
           M  +  EP+  T  ++ +  A +  ++  + +H  I++  +    + +G++++DMYAK G
Sbjct: 365 MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLG 424

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVL 267
            I  A  VF  +P +DVVS   +ISGY Q GL  EAIE++R ++    I  N  T+ S+L
Sbjct: 425 VIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSIL 484

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + + AL  G ++H H+++  +   V +   LID+Y KCG L  +  +F  +   + +
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSV 544

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            WNA++  +  HG G + ++LF  M++E  VKPD VT++++LS CSH G+ D G   FH 
Sbjct: 545 PWNAIISCHGIHGHGEKALKLFREMQDEG-VKPDHVTFISLLSACSHSGLVDEGKWFFHL 603

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           + +   G +P ++HYGC+VD+LGRAG +  A +FIK+MP  P A+I G+LLGACR+H N+
Sbjct: 604 MQEY--GIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNI 661

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G+F   RL E++ EN G YV+LSN+YA+ G+WE V +VR L +E+ + K PG S IE+
Sbjct: 662 ELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEV 721

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           ++ +  F+  ++SHP  +E+ A+++ L+ K K  GY+PD S VL DV+E++KE +L  HS
Sbjct: 722 NRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 781

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ FG+I TP  + IR+ KNLR+C DCHN  KF+S++  R++ +RD  RFHH   G 
Sbjct: 782 ERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGI 841

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 842 CSCGDYW 848



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 216/404 (53%), Gaps = 13/404 (3%)

Query: 39  NGQLTKALIEMATLGLEMRFEE----YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           NG   +A+     L L  +F+     +  +L AC   +TL  G+++H  + K  ++  V+
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVF 208

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           +   LI  Y++   +  AR +FD+M  R++ SW AMIS   Q  ++ +AL++   M    
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
              +  T A++L  CA          IH  +IK   E  ++V ++L++MYAK G + +A+
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +  RDVVS  +II+ Y Q      A   F K+Q+ G+  + +T  S+ +  +   
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 275 ALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
              + + VH  ++ R  +   VV+ N+++DMY+K G +  + +VF+ +  + V+SWN ++
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY+++G+  E +E++ +M E  ++K +  T++++L+  +H G   +G+ +   ++  K 
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI--KT 506

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAIL 434
               ++    C++D+ G+ GR+ +A+     +P E   P  AI+
Sbjct: 507 NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAII 550



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 180/312 (57%), Gaps = 8/312 (2%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           ++++L ++C   +TL   +R+HA ++ +      ++  RL+  Y     +S +R  FD++
Sbjct: 78  DFNSLFDSCT--KTLLA-KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQI 134

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELG 178
           + ++V +W +MISAY +  H  EA++ F ++L  +  + + +TF  VL +C        G
Sbjct: 135 QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---G 191

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++IH  + K  F+  ++V +SL+ MY++ G +  AR +F+ +P RD+ S  A+ISG  Q 
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQN 251

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   +A+++  ++++EG+  + VT AS+L   + L  +     +H +V++  +   + + 
Sbjct: 252 GNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS 311

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+LI+MY+K G+L  +++VF  M  R V+SWN+++  Y ++         F  M + N +
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKM-QLNGL 370

Query: 359 KPDSVTYLAVLS 370
           +PD +T +++ S
Sbjct: 371 EPDLLTLVSLAS 382



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R   +  E  F ++  SC       L K++H+L++ S      ++   L+++YA  G + 
Sbjct: 69  RQPAKNEEIDFNSLFDSCTKTL---LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVS 125

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMISNYVTYASVLTAL 270
            +RG F+ +  +DV +  ++IS Y + G   EAI+ F + L V    +++ T+  VL A 
Sbjct: 126 LSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC 185

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
             L     G+++H  V +      V +  SLI MYS+ G +  +R +FD+M  R + SWN
Sbjct: 186 QTLV---DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWN 242

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+ G  ++G   + +++ + MR E  +  DSVT  ++L  C+  G  D   A    +  
Sbjct: 243 AMISGLIQNGNAAQALDVLDEMRLEG-INMDSVTVASILPVCAQLG--DISTATLIHLYV 299

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            K G E E+     +++M  + G +G+A +  + M
Sbjct: 300 IKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+++Y+  G ++ SR  FD +  + V +WN+M+  Y ++G  RE ++ F  +    K + 
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KDGFEPEIEHYGCVVDMLGRAGRVGE 417
           D  T+  VL  C           V    + C   K GF+ ++     ++ M  R G VG 
Sbjct: 174 DFYTFPPVLKACQ--------TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGI 225

Query: 418 ALEFIKNMPF 427
           A     +MPF
Sbjct: 226 ARSLFDDMPF 235


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 385/663 (58%), Gaps = 41/663 (6%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQN-------LKTLCSNGQLTKAL---IEMATLGLEMRFEE 60
           +S+L      L + +  P+P         ++   S+G    +L   I+M   G       
Sbjct: 49  YSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNV 108

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA-------- 112
           + ++L +C   + LR G+ VH  +I+      +Y    L+  Y+K   L +         
Sbjct: 109 FPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFD 168

Query: 113 ---------------------RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                                RK+F+ M +R++VSW  +IS  +Q     +AL +   M 
Sbjct: 169 EGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG 228

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
            +D  P+ FT ++VL   A       GK+IH   I++ +++ +++GSSL+DMYAK  R+ 
Sbjct: 229 NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVD 288

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           ++  VF  LP+ D +S  +II+G  Q G+ +E ++ F+++ +  +  N+V+++S++ A +
Sbjct: 289 DSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA 348

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L  L  GKQ+H +++R      V + ++L+DMY+KCG++  +R +FD M    ++SW A
Sbjct: 349 HLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTA 408

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M++GY+ HG   + + LF  M  E  VKP+ V ++AVL+ CSH G+ D     F+ +   
Sbjct: 409 MIMGYALHGHAYDAISLFKRMEVEG-VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQ- 466

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                P +EHY  V D+LGR GR+ EA EFI +M  EPT ++  +LL ACRVH N+++ E
Sbjct: 467 DYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAE 526

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            V ++L  ++P+N G YV+LSN+Y++AGRW+D  ++R  M++K + K P  SWIE+   +
Sbjct: 527 KVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKV 586

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D+SHP  + ++  +K L  + +  GYV D + VL+DV+EEQK  +L  HSE+LA
Sbjct: 587 HAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLA 646

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           +TFG+I TP G  IRV KNLR+CVDCH   KF+SK+ GR++ +RD +RFHH  +G CSCG
Sbjct: 647 ITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCG 706

Query: 632 DYW 634
           D+W
Sbjct: 707 DFW 709



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 193/410 (47%), Gaps = 38/410 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RE 121
           TLL    + ++    +++HA +++T    P  L T L + Y+    L D+  +F+ +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSI-YSNLNLLHDSLLIFNSLPSP 68

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
              ++W ++I  Y+       +L+ FI+ML S   P+   F +VL SC        G+ +
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESV 128

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA---------------------------- 213
           H  II+      +Y  ++L++MY+K   + E                             
Sbjct: 129 HGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGS 188

Query: 214 -RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            R VFE +P+RD+VS   +ISG AQ G+ E+A+ + R++    +  +  T +SVL   + 
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
              L  GK++H + +R    + V + +SLIDMY+KC  +  S RVF  + +   ISWN++
Sbjct: 249 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 308

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + G  ++GM  E ++ F  M    K+KP+ V++ +++  C+H      G  +   I+  +
Sbjct: 309 IAGCVQNGMFDEGLKFFQQMLIA-KIKPNHVSFSSIMPACAHLTTLHLGKQLHGYII--R 365

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF----EPTAAILGSLL 438
             F+  +     +VDM  + G +  A      M        TA I+G  L
Sbjct: 366 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 415


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/622 (38%), Positives = 369/622 (59%), Gaps = 11/622 (1%)

Query: 17  TQQQLTVPSF-PPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQR 72
               L  P + PP  ++L   C    L  A   L  M   G+      Y  L+  C+   
Sbjct: 240 VNSSLVSPHYVPPETESLLNHCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHG 299

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
            +R G+RVH H+    Y P  +L   LI  Y K   L +A+ +FD+M ERNVVSWT MIS
Sbjct: 300 AVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMIS 359

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           AYS    +  A+ L   M R    PN FTF++VL +C   +     KQ+HS I+K   ES
Sbjct: 360 AYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLES 416

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            ++V S+L+D+Y+K G + EA  VF  +   D V   +II+ +AQ    +EA+ L++ ++
Sbjct: 417 DVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMR 476

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G  ++  T  SVL A + L+ L  G+Q H HVL+F+    ++L N+L+DMY KCGSL 
Sbjct: 477 RVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFD--QDLILNNALLDMYCKCGSLE 534

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            ++ +F+ M+++ VISW+ M+ G +++G   E + LF  M+ +   KP+ +T L VL  C
Sbjct: 535 DAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGP-KPNHITILGVLFAC 593

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           SH G+ + G   F  + +   G +P  EHYGC++D+LGRA ++ + ++ I  M  EP   
Sbjct: 594 SHAGLVNEGWYYFRSMNNLY-GIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVV 652

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
              +LL ACR   NVD+  +  + +++++P++ G YV+LSN+YA + RW DV  VR  MK
Sbjct: 653 TWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMK 712

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           ++ + K+PG SWIE+++ +H F   D+SHP  +E++ ++ Q   +   AGYVPD + VL 
Sbjct: 713 KRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQ 772

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           D++ EQ+E  L  HSEKLA+ FG++  P+   IR+ KNL+IC DCH FAK ++++  R +
Sbjct: 773 DLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHI 832

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD  R+HH  +G CSCGDYW
Sbjct: 833 VIRDPIRYHHFQDGVCSCGDYW 854


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 373/606 (61%), Gaps = 35/606 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+L    +Q  +  G+++H  ++K  +   V++ + L+  Y K   +S A ++FDE++
Sbjct: 141 FSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ 200

Query: 121 ERNVV-------------------------------SWTAMISAYSQKAHSFEALNLFIR 149
           ERNVV                               SWT MI+   Q     EA++LF  
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M +     +++TF +VLT+C G    + GK+IH+LII+S +  +++VGS+L+DMY K   
Sbjct: 261 MRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRS 320

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  VF+ +  ++VVS TA++ GY Q G  EEA+ +F  +Q  G+  +  T  SV+++
Sbjct: 321 VRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISS 380

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LA+L  G Q H   L   + S++ + N+LI +Y KCGS+  S ++FD MS R  +SW
Sbjct: 381 CANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSW 440

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A++ GY++ G   E ++LF  M  +  +KPD+VT++AVLS CS  G+ +RG   F  ++
Sbjct: 441 TALVSGYAQFGKANETIDLFERMLVQG-LKPDAVTFIAVLSACSRAGLVERGQQYFESML 499

Query: 390 DCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             KD G  P  +HY C++D+ GRAGR+ EA  FI  MPF P +    +LL +CR++ N +
Sbjct: 500 --KDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEE 557

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           IG++  + L+E++P+N   Y++LS++YA+ G+W +V ++R  M+EK   K+PG SWI+  
Sbjct: 558 IGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYK 617

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             ++ F A D+S P  +++ A++++L+ K  E GYVPD S VL+DV++ +K K+L  HSE
Sbjct: 618 SKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSE 677

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FGL+  P G PIRV+KNLR+C DCHN  K++SK+  R++ +RD  RFH   +GTC
Sbjct: 678 KLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTC 737

Query: 629 SCGDYW 634
           SCGD+W
Sbjct: 738 SCGDFW 743



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 155/288 (53%), Gaps = 2/288 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+ M    + ++L AC   R L+ G+ +H  +I++ Y   V++ + L+  Y KC 
Sbjct: 260 DMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCR 319

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F  M  +NVVSWTAM+  Y Q   S EA+ +F  M R+  EP++FT  +V++
Sbjct: 320 SVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SCA     E G Q H   + S   S I V ++L+ +Y K G I ++  +F+ +  RD VS
Sbjct: 380 SCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS 439

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA++SGYAQ G   E I+LF ++ V+G+  + VT+ +VL+A S    +  G+Q    +L
Sbjct: 440 WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESML 499

Query: 288 R-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           +   I  +      +ID++ + G L  ++   + M      I W  +L
Sbjct: 500 KDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLL 547



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 146/270 (54%), Gaps = 12/270 (4%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +A  L   +++S T P  F +  ++ + +        + +   + + N     +  +++L
Sbjct: 23  QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPN----SFSWNTML 78

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NY 260
             Y+K+G +   + +F  +P RD VS  ++ISGY   G   EA++ +  +  +G+++ N 
Sbjct: 79  SAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNR 138

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +T++++L  +S    +  G+Q+H  +++F   +YV + +SL+DMY+K G ++ + +VFD 
Sbjct: 139 ITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE 198

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           + ER V+ +N M+ G  + GM ++   LF+ M+E      DS+++  +++G    G+E  
Sbjct: 199 VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKER-----DSISWTTMITGLIQNGLEAE 253

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            + +F ++   ++G   +   +G V+   G
Sbjct: 254 AMDLFRDMR--QEGMAMDQYTFGSVLTACG 281



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  +   +M   G+E       +++++C N  +L  G + H   + +     + +   LI
Sbjct: 354 EAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + D+ ++FDEM  R+ VSWTA++S Y+Q   + E ++LF RML    +P+  
Sbjct: 414 TLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV 473

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSN----FESHIYVGSSLLDMYAKAGRIHEARGV 216
           TF  VL++C+ A   E G+Q    ++K +    F  H    + ++D++ +AGR+ EA+  
Sbjct: 474 TFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHY---TCMIDLFGRAGRLEEAKNF 530

Query: 217 FECLP 221
              +P
Sbjct: 531 INKMP 535


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 359/574 (62%), Gaps = 4/574 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+ACVN   L+ G+ V   + +T +   +++ T LI  Y +C    +A ++F  M+++
Sbjct: 116 SILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK 175

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+++W+A+I+A++   H  EAL  F  M +    PN  TF ++L       G E   +IH
Sbjct: 176 NLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIH 235

Query: 183 SLIIKSNFESHIYVGSSLLDMYAK--AGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            LI +   +    + ++L+++Y +   G +  A  + + + E+ + +   +I+GY   G 
Sbjct: 236 LLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGR 295

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+E +++LQ+E +  + VT+ SVL A +   +L  GK +HS+ +   + S V+++N+
Sbjct: 296 SREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 355

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L +MYSKCGS+  +RR+FD+M  R+ +SWN ML  Y++HG   EV++L   M +E  VK 
Sbjct: 356 LTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG-VKL 414

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+++VLS CSH G+   G   FH +   + G E + EHYGC+VD+LGRAG++ EA +
Sbjct: 415 NGITFVSVLSSCSHAGLIAEGCQYFHSLGHDR-GIEVKTEHYGCLVDLLGRAGKLQEAEK 473

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           +I  MP EP      SLLGACRVH ++D G+   ++L+E++P N+   V+LSN+Y+  G 
Sbjct: 474 YISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGD 533

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W++  ++R  M  + V K PG S I++   +H F   D SHP   E+  KV++L    +E
Sbjct: 534 WKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMRE 593

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVPD   VL+DVDEEQKE +L  HSEKLA+ FGLI TPE + + + KNLR+C DCH  
Sbjct: 594 AGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTA 653

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+ GR++ +RD +RFHH  +G+CSC DYW
Sbjct: 654 TKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 203/387 (52%), Gaps = 5/387 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G++     +  +LN+ V+   LR G+ +H+ + ++ +   V++ T L+  Y KC  L+DA
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           RK+FD M  R+V +W +MISAYS    S EA  +F RM       +  TF ++L +C   
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + GK +   I +++FE  ++VG++L+ MYA+      A  VF  + ++++++ +AII
Sbjct: 125 ENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAII 184

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + +A  G   EA+  FR +Q EG++ N VT+ S+L   +  + L    ++H  +    + 
Sbjct: 185 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 244

Query: 293 SYVVLQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
               + N+L+++Y +C  G L  +  +   M E+ + +WN ++ GY+ HG  RE +E + 
Sbjct: 245 DTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQ 304

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            ++ E  +  D VT+++VL+ C+       G  +    V+C  G + ++     + +M  
Sbjct: 305 RLQLE-AIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC--GLDSDVIVKNALTNMYS 361

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSL 437
           + G +  A     +MP     +  G L
Sbjct: 362 KCGSMENARRIFDSMPIRSAVSWNGML 388



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 202/436 (46%), Gaps = 49/436 (11%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           ML    + N  TF  VL S         GK IHS + +S     ++V ++L++ Y K G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +AR VF+ +P R V +  ++IS Y+      EA  +F+++Q EG   + VT+ S+L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
                 L HGK V   +        + +  +LI MY++C S   + +VF  M ++ +I+W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGMEDRG----LAV 384
           +A++  ++ HG   E +  F +M++E  + P+ VT++++L+G  +  G+E+      L  
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEG-ILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 385 FHEIVD--------------CKDG------------FEPEIEHYGCVVDMLGRAGRVGEA 418
            H + D              C+ G             E +I  +  +++     GR  EA
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREA 299

Query: 419 LEFIKNMPFE--PTAAI-LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI---LS 472
           LE  + +  E  P   +   S+L AC    ++  G+ +    +E   ++  + ++   L+
Sbjct: 300 LETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDS--DVIVKNALT 357

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y+  G  E+  R+ + M        P RS +  + +L  +     S  +  +L  K++
Sbjct: 358 NMYSKCGSMENARRIFDSM--------PIRSAVSWNGMLQAYAQHGESEEVL-KLIRKME 408

Query: 533 QLSVKFKEAGYVPDMS 548
           Q  VK     +V  +S
Sbjct: 409 QEGVKLNGITFVSVLS 424


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 374/625 (59%), Gaps = 17/625 (2%)

Query: 13  SLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACV 69
           S + T Q L +  F         LC    L +A+  M +L   GL      Y  L+  C+
Sbjct: 20  SYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           + R +  G  +  H+    +RP ++L   LI  Y K   L+DA ++FD+M +RNV+SWT 
Sbjct: 73  SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           MISAYS+     +AL L + MLR +  PN +T+++VL SC G     +   +H  IIK  
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEG 189

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            ES ++V S+L+D++AK G   +A  VF+ +   D +   +II G+AQ    + A+ELF+
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFK 249

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++  G I+   T  SVL A +GLA L  G Q H H+++++    ++L N+L+DMY KCG
Sbjct: 250 RMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCG 307

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           SL  + RVF+ M ER VI+W+ M+ G +++G  +E ++LF  M+     KP+ +T + VL
Sbjct: 308 SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG-TKPNYITIVGVL 366

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             CSH G+ + G   F  +     G +P  EHYGC++D+LG+AG++ +A++ +  M  EP
Sbjct: 367 FACSHAGLLEDGWYYFRSMKKLY-GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEP 425

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            A    +LLGACRV  N+ + E+  ++++ ++PE+AG Y +LSN+YA++ +W+ V  +R 
Sbjct: 426 DAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRT 485

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
            M+++ + K+PG SWIE+++ +H F   D SHP   E+S K+ QL  +    GYVP+ + 
Sbjct: 486 RMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNF 545

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL D++ EQ E  L  HSEKLAL FGL+  P    IR+ KNLRIC DCH F K  SK+  
Sbjct: 546 VLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEI 605

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + +R   R+HH  +G CSCGDYW
Sbjct: 606 RSIVIRGPIRYHHFQDGKCSCGDYW 630


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/640 (38%), Positives = 370/640 (57%), Gaps = 72/640 (11%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           + +C + R L  GQ++HA    + +     + + L   Y KC+ + DARK+FD M +R+V
Sbjct: 111 IKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDV 170

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS---------CAGAF-- 173
           V W+AMI+ YS+     EA  LF  M     EPN  ++  +L             G F  
Sbjct: 171 VVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRM 230

Query: 174 ----GFE--------------------LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
               GF                     +G Q+H  +IK    S  +V S++LDMY K G 
Sbjct: 231 MLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGC 290

Query: 210 IHEARGVFECLPER-----------------------------------DVVSCTAIISG 234
           + E   VF+ + E                                    +VV+ T+II+ 
Sbjct: 291 VKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIAS 350

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            +Q G D EA+ELFR +Q  G+  N VT  S++ A   ++AL HGK++H   LR  I   
Sbjct: 351 CSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDD 410

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V + ++LIDMY+KCG +  +RR FD MS   ++SWNA++ GY+ HG  +E +E+F++M +
Sbjct: 411 VYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQ 470

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             + KPD VT+  VLS C+  G+ + G   ++ + + + G EP++EHY C+V +L R G+
Sbjct: 471 SGQ-KPDLVTFTCVLSACAQNGLTEEGWRCYNSMSE-EHGIEPKMEHYACLVTLLSRVGK 528

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA   IK MPFEP A + G+LL +CRVH N+ +GE   ++L  +EP N GNY++LSN+
Sbjct: 529 LEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNI 588

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YAS G W++  R+RE+MK K + K+PG SWIE+   +H   A D+SHP  +++  K+ +L
Sbjct: 589 YASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKL 648

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
           +++ K++GY+P  + VL DV+E+ KE++L GHSEKLA+  GL+ T  G P++VIKNLRIC
Sbjct: 649 NMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRIC 708

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH   K +S++ GR++ +RD NRFHH  +G CSCGD+W
Sbjct: 709 DDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 179/364 (49%), Gaps = 41/364 (11%)

Query: 65  LNACVNQRT--LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR---KMFDEM 119
           L+ C++  T  L   ++ HA +++        L T L+ FY     LS  +    +   +
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
               + S++++I A+++  H    L  F  +      P+ F   + + SCA     + G+
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQ 124

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H+    S F +   V SSL  MY K  RI +AR +F+ +P+RDVV  +A+I+GY++LG
Sbjct: 125 QLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLG 184

Query: 240 LDEEAIEL-----------------------------------FRKLQVEGMISNYVTYA 264
           L EEA EL                                   FR + V+G   +  T +
Sbjct: 185 LVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVS 244

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            VL A+  L  +  G QVH +V++  + S   + ++++DMY KCG +    RVFD + E 
Sbjct: 245 CVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEM 304

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            + S NA L G S++GM    +E+FN  +++ K++ + VT+ ++++ CS  G +   L +
Sbjct: 305 EIGSLNAFLTGLSRNGMVDTALEVFNKFKDQ-KMELNVVTWTSIIASCSQNGKDLEALEL 363

Query: 385 FHEI 388
           F ++
Sbjct: 364 FRDM 367



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR---GVFECLPERDVVSCTAIISG 234
            +Q H+LI++ N  S   + +SLL  YA A  +   +    +   LP   + S +++I  
Sbjct: 19  ARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHA 78

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           +A+       +  F  L    +I +     S + + + L AL  G+Q+H+        + 
Sbjct: 79  FARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTD 138

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            ++ +SL  MY KC  +  +R++FD M +R V+ W+AM+ GYS+ G+  E  ELF  MR 
Sbjct: 139 SIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMR- 197

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
              V+P+ V++  +L+G  + G  D  + +F  ++    GF P+     CV+  +G
Sbjct: 198 SGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMML--VQGFWPDGSTVSCVLPAVG 251



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 9/219 (4%)

Query: 37  CS-NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           CS NG+  +AL    +M   G+E       +L+ AC N   L  G+ +H   ++      
Sbjct: 351 CSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDD 410

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           VY+ + LI  Y KC  +  AR+ FD+M   N+VSW A++  Y+    + E + +F  ML+
Sbjct: 411 VYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQ 470

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIH-SLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           S  +P+  TF  VL++CA     E G + + S+  +   E  +   + L+ + ++ G++ 
Sbjct: 471 SGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLE 530

Query: 212 EARGVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIE 246
           EA  + + +P E D     A++S    +  L L E A E
Sbjct: 531 EAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAE 569


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 366/591 (61%), Gaps = 5/591 (0%)

Query: 46  LIEMATLGLEMRFEEYDTL--LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           L EM   G EM+  E   L  L AC+++  LR  + +H +  + C++  V L    I+ Y
Sbjct: 337 LQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAY 395

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  L+ A K+F  + ++ V SW A+I  ++Q     +AL+L  +M  S  +P+ FT +
Sbjct: 396 AKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTIS 455

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA     + GK+IH  ++++  E+  +VG+SLL  Y   G+   AR +F+ + ++
Sbjct: 456 SLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDK 515

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           ++VS  A+ISGY+Q GL  E++ LFRK   EG+ S+ +   SV  A S L+AL  GK+ H
Sbjct: 516 NLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAH 575

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            +VL+        +  S+IDMY+K G +  SR+VFD + ++ V SWNA++V +  HG G+
Sbjct: 576 GYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGK 635

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E +EL+  M++  ++ PD  TY+ +L  C H G+ + GL  F E+ +  +  EP++EHY 
Sbjct: 636 EAIELYERMKKVGQM-PDRFTYIGILMACGHAGLVEEGLKYFKEMQNF-NLIEPKLEHYA 693

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C++DML RAGR+ +AL  +  MP E    I  SLL +CR    ++IGE V ++L+E+EP+
Sbjct: 694 CLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPD 753

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
            A NYV+LSNLYA  G+W+ V RVR++MKE  + KD G SWIE+   +++F   D   P 
Sbjct: 754 KAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPK 813

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
             E+    ++L  +  E GY P+ S VL++V EE+K  +L GHSEKLA++FGL+ T +G 
Sbjct: 814 SAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGT 873

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +R+ KNLRIC DCHN AK +SK   R++ +RD  RFHH  +G CSC DYW
Sbjct: 874 TLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 19/366 (5%)

Query: 20  QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRF------EEYDTLLNACVNQRT 73
           Q   PSF    Q +  LC    LT ALI + +      F      E    LL AC NQ+ 
Sbjct: 2   QTNRPSFL---QEIAALCETDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKD 58

Query: 74  LRGGQRVHAHMI-KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           +  G+R+H  +   T YR    L TRLI  Y  C    D+R +FD M  +N++ W A++S
Sbjct: 59  IETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVS 118

Query: 133 AYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            Y++     + + +F+ ++  +D +P+ FTF +V+ +C G     LG+ IH ++IK    
Sbjct: 119 GYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLV 178

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK- 250
             ++VG++L+ MY K G + EA  VF+ +PE ++VS  ++I  +++ G   ++ +L  + 
Sbjct: 179 LDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM 238

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           L  EG++ + VT  ++L   +G   +  G  +H   ++  +   V++ N+++ MYSKCG 
Sbjct: 239 LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN----KVKPDSVTYL 366
           L  ++  F   + + V+SWN M+  +S  G   +V E FNL++E      ++K + VT L
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEG---DVNEAFNLLQEMQIQGEEMKANEVTIL 355

Query: 367 AVLSGC 372
            VL  C
Sbjct: 356 NVLPAC 361



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 139/263 (52%), Gaps = 5/263 (1%)

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYV-GSSLLDMYAKAGRIHEARGVFECLPER 223
           +L +C      E G+++H  +  S    + YV  + L+ MYA  G   ++R VF+ +  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQV 282
           +++   A++SGY + GL  + +++F  L  +     +  T+ SV+ A  G+  +  G+ +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  V++  +   V + N+L+ MY KCG++  + +VFD M E  ++SWN+M+  +S++G  
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           R+  +L   M  E  + PD VT + +L  C+  G  D G+ +    V  K G   E+   
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV--KLGLSEEVMVN 286

Query: 403 GCVVDMLGRAGRVGEA-LEFIKN 424
             +V M  + G + EA + F+KN
Sbjct: 287 NAMVYMYSKCGYLNEAQMSFVKN 309


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/592 (39%), Positives = 362/592 (61%), Gaps = 31/592 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K   +M  +G +     + ++  AC+       G+ VH   +K+ Y   +Y+   L+  Y
Sbjct: 226 KLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLY 285

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            K   + DAR  F+E+ +++V+ W+ MI+ Y+Q   S EA+ +F +M ++   PN+FTFA
Sbjct: 286 TKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFA 345

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +VL +CA   G  LG QIH  +IK    S ++V ++L+D+YAK GR+  +  +F   P R
Sbjct: 346 SVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHR 405

Query: 224 -DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
            DV     +I G+ QLG  E+A+ LF  +    + +  VTY+S L A + LAAL  G Q+
Sbjct: 406 NDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI 465

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           HS  ++      +V+ N+LIDMY+KCGS+  +R VFD M+++  +SWNAM+ GYS HG+ 
Sbjct: 466 HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLA 525

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
                                        C++ G+ D+G A F  ++    G EP IEHY
Sbjct: 526 -----------------------------CANAGLLDQGQAYFTSMIQ-DHGIEPCIEHY 555

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            C+V +LGR G + +A++ I  +PF+P+  +  +LLGAC +H ++++G    Q ++E+EP
Sbjct: 556 TCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEP 615

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           ++   +V+LSN+YA+A RW++V  VR+ MK K V K+PG SWIE    +H+F   D SHP
Sbjct: 616 QDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHP 675

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
               ++  ++ L +K K+AGY+P+ + VL DV++E+KE++L  HSE+LAL+FG+I TP G
Sbjct: 676 EVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSG 735

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +PIR++KNLRICVDCH   K +SKV  R++ +RD NRFHH  EG CSCGDYW
Sbjct: 736 SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 206/367 (56%), Gaps = 4/367 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G E+    + T+L   V+      G  +HA + K  +    ++ T LI  Y+ C  +  A
Sbjct: 134 GHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVA 193

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD +  +++VSWT M++ +++     EAL LF +M     +PN FTFA+V  +C G 
Sbjct: 194 REVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGL 253

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F++GK +H   +KS +E  +YVG +LLD+Y K+G I +AR  FE +P++DV+  + +I
Sbjct: 254 EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMI 313

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + YAQ    +EA+E+F +++   ++ N  T+ASVL A + +  L  G Q+H HV++  + 
Sbjct: 314 ARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLH 373

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNL 351
           S V + N+L+D+Y+KCG +  S  +F     R  V  WN ++VG+ + G G + + LF L
Sbjct: 374 SDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLF-L 432

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
              E +V+   VTY + L  C+     + GL +    V  K  F+ +I     ++DM  +
Sbjct: 433 NMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV--KTTFDKDIVVTNALIDMYAK 490

Query: 412 AGRVGEA 418
            G + +A
Sbjct: 491 CGSIKDA 497



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 197/374 (52%), Gaps = 7/374 (1%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           E     Y   L  C+ +     G+ +H  ++K      ++    L+  Y K + L DA K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM ERN +S+  +I  Y++     EA+ LF+R+ R   E N F F T+L        
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            ELG  IH+ I K   ES+ +VG++L+D Y+  GR+  AR VF+ +  +D+VS T +++ 
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL--RFEIP 292
           +A+    +EA++LF ++++ G   N  T+ASV  A  GL A   GK VH   L  R+E+ 
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
            YV +  +L+D+Y+K G +  +R  F+ + ++ VI W+ M+  Y++    +E VE+F  M
Sbjct: 275 LYVGV--ALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           R+   V P+  T+ +VL  C+     + G  +   ++  K G   ++     ++D+  + 
Sbjct: 333 RQA-LVLPNQFTFASVLQACATMEGLNLGNQIHCHVI--KIGLHSDVFVSNALMDVYAKC 389

Query: 413 GRVGEALEFIKNMP 426
           GR+  ++      P
Sbjct: 390 GRMENSMXLFAESP 403



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 7/276 (2%)

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S +E N   +A  L  C        GK +H  I+K      ++  + LL+MY K+  + +
Sbjct: 32  SPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCD 91

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F+ +PER+ +S   +I GYA+     EAIELF +L  EG   N   + ++L  L  
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           +     G  +H+ + +    S   +  +LID YS CG +  +R VFD +  + ++SW  M
Sbjct: 152 MDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC- 391
           +  ++++   +E ++LF+ MR     KP++ T+ +V   C   G+E     V   +  C 
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVG-FKPNNFTFASVFKACL--GLE--AFDVGKSVHGCA 266

Query: 392 -KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            K  +E ++     ++D+  ++G + +A    + +P
Sbjct: 267 LKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIP 302


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 370/624 (59%), Gaps = 35/624 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +  + G ++H H++K  Y   +Y+ T LI  Y
Sbjct: 49  KLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMY 108

Query: 104 NKCECLSDA-------------------------------RKMFDEMRERNVVSWTAMIS 132
            + E L DA                               R MFDE+  ++VVSW AMIS
Sbjct: 109 VQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMIS 168

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y +  +  EAL LF  M++++  P+E T  TV+++ A +   ELG+Q+HS I    F S
Sbjct: 169 GYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGS 228

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D Y+K G +  A G+F  L  +DV+S   +I GY  L L +EA+ LF+++ 
Sbjct: 229 NLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEML 288

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +    + +   L+ SLIDMYSKCG 
Sbjct: 289 RSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGD 348

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF++M  +++ +WNAM+ G++ HG      ++F+ MR+ N++KPD +T++ +LS
Sbjct: 349 IEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRK-NEIKPDDITFVGLLS 407

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D G  +F  +        P++EHYGC++D+LG +G   EA E I  M  EP 
Sbjct: 408 ACSHAGMLDLGRHIFRSMTH-NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPD 466

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
             I  SLL AC++H NV++GE   Q L +IEP N G+YV+LSN+YA+AGRW +V R+R L
Sbjct: 467 GVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGL 526

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           + +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S V
Sbjct: 527 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEV 586

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L +++EE KE  L  HSEKLA+ FGLI T     + ++KNLR+C +CH   K +SK+Y R
Sbjct: 587 LQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKR 646

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++  RD+ RFHH  +G CSC DYW
Sbjct: 647 EIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 186/391 (47%), Gaps = 35/391 (8%)

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
           E L  A  +F+ ++E N++ W  M   ++       AL L++ M+     PN +TF  +L
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            SCA     + G QIH  ++K  +E  +YV +SL+ MY +  R+ +A  VF+    RDVV
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------- 261
           S TA+++GYA  G  E A  +F ++ V+       MIS YV                   
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190

Query: 262 ------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
                 T  +V++A +   ++  G+QVHS +      S + + N+LID YSKCG +  + 
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            +F  +S + VISWN ++ GY+   + +E + LF  M    +  P+ VT L++L  C+H 
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE-SPNDVTMLSILHACAHL 309

Query: 376 GMEDRGLAVFHEIVDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           G  D G  + H  +D +  G          ++DM  + G +  A +   +M  +   A  
Sbjct: 310 GAIDIGRWI-HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 435 GSLLG-ACRVHYNVDIGEFVGQRLMEIEPEN 464
             + G A     N     F   R  EI+P++
Sbjct: 369 AMIFGFAMHGRANAAFDIFSRMRKNEIKPDD 399


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/554 (40%), Positives = 357/554 (64%), Gaps = 3/554 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   + AC   + L   +++HAH+  + +    +L   LI  Y KC  + +A K+FD+MR
Sbjct: 54  YHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +++VSWT++I+ Y+Q     EA+ L   ML+   +PN FTFA++L +        +G Q
Sbjct: 114 NKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQ 173

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+L +K ++   +YVGS+LLDMYA+ G++  A  VF+ L  ++ VS  A+ISG+A+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E A+ +F ++Q  G  + + TY+S+ +AL+G+ AL  GK VH+H+++        + N+
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNT 293

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++DMY+K GS+  +R+VF+ +  + +++WN+ML  ++++G+G+E V  F  MR+   +  
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG-IYL 352

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +++L +L+ CSHGG+   G   F  I +     EPEIEHY  VVD+LGRAG +  AL 
Sbjct: 353 NQISFLCILTACSHGGLVKEGKHYFDMIKEYN--LEPEIEHYVTVVDLLGRAGLLNYALV 410

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  MP EPTAA+ G+LL ACR+H N  +G+F    + +++P+++G  V+L N+YAS G 
Sbjct: 411 FIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGH 470

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   RVR++MK   V K+P  SW+E++  +H F A+D +HP  EE+     ++S+K ++
Sbjct: 471 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRK 530

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPDM  VL  VDE+++E  L  HSEK+AL F LI  P GA IR++KN+RIC DCH+ 
Sbjct: 531 EGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSA 590

Query: 601 AKFVSKVYGRKVSL 614
            K++SKV+ R++ +
Sbjct: 591 FKYISKVFEREIVI 604



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 139/262 (53%), Gaps = 3/262 (1%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P    +   +T+CA +   +  ++IH+ +  S F    ++ +SL+ +Y K G + EA  V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  +D+VS T++I+GYAQ  +  EAI L   +       N  T+AS+L A+   A  
Sbjct: 109 FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADS 168

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G G Q+H+  ++ +    V + ++L+DMY++CG +  +  VFD +  +  +SWNA++ G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           ++ G G   + +F  M + N  +    TY ++ S  +  G  ++G  V   ++  +    
Sbjct: 229 ARKGDGETALMVFAEM-QRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLT 287

Query: 397 PEIEHYGCVVDMLGRAGRVGEA 418
             + +   ++DM  ++G + +A
Sbjct: 288 AFVGN--TMLDMYAKSGSMIDA 307



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 88/166 (53%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G E     Y ++ +A      L  G+ VHAHMIK+  +   ++   ++  Y K  
Sbjct: 243 EMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSG 302

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+F+ +  +++V+W +M++A++Q     EA++ F  M +S    N+ +F  +LT
Sbjct: 303 SMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILT 362

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GK    +I + N E  I    +++D+  +AG ++ A
Sbjct: 363 ACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/625 (38%), Positives = 375/625 (60%), Gaps = 37/625 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +  + GQ++H H++K  Y   +++ T LI  Y
Sbjct: 120 KLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVY 179

Query: 104 NKCECLSDARK-------------------------------MFDEMRERNVVSWTAMIS 132
            +   L DARK                               +FDE+  ++VVSW AMIS
Sbjct: 180 VQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMIS 239

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++  +  EAL LF  M++++  P+E T  TV+++CA +   ELG+Q+HS I    F S
Sbjct: 240 GYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS 299

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + +SL+D+Y+K G +  A G+FE L  +DV+S   +I GY  + L +EA+ LF+++ 
Sbjct: 300 NLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +      +   L+ SLIDMY+KCG 
Sbjct: 360 RSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGD 419

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF+++  +++ SWNAM+ G++ HG      ++F+ MR+   ++PD +T++ +LS
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG-IEPDDITFVGLLS 478

Query: 371 GCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CS  GM D G  +F  +  D K    P++EHYGC++D+LG +G   EA E I NM  EP
Sbjct: 479 ACSRSGMLDLGRHIFRTMTQDYK--ITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEP 536

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC++  NV++GE   Q L++IEPEN G YV+LSN+YA+AGRW +V ++R 
Sbjct: 537 DGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRA 596

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+ +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  ++AG+VPD S 
Sbjct: 597 LLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSE 656

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y 
Sbjct: 657 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 716

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD+ RFHH  +G CSC DYW
Sbjct: 717 REIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 220/446 (49%), Gaps = 45/446 (10%)

Query: 61  YDTL-----LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDA 112
           YD+L     L+   N +TL+  + +HA MIKT      Y  ++L+   V     + L  A
Sbjct: 28  YDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYA 87

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
             +F+ ++E N++ W  M   ++  +    AL L++ M+     PN +TF  +L SCA +
Sbjct: 88  ISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKS 147

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F+ G+QIH  ++K  ++  ++V +SL+ +Y + GR+ +AR VF+  P RDVVS TA+I
Sbjct: 148 KAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALI 207

Query: 233 SGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------------- 261
            GYA  G  E A +LF ++ V+       MIS Y                          
Sbjct: 208 KGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDES 267

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T  +V++A +   ++  G+QVHS +      S + + NSL+D+YSKCG L  +  +F+ +
Sbjct: 268 TMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL 327

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             + VISWN ++ GY+   + +E + LF  M    + +P+ VT L++L  C+H G  D G
Sbjct: 328 LYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTMLSILPACAHLGAIDIG 386

Query: 382 LAVFHEIVDCKDGFEPEIEHY-GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
             + H  +D +             ++DM  + G + EA   + N     + +   +++  
Sbjct: 387 RWI-HVYIDKRLKSATNASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSSWNAMIFG 444

Query: 441 CRVHYNVDIG--EFVGQRLMEIEPEN 464
             +H   D     F   R + IEP++
Sbjct: 445 FAMHGRADAAFDIFSRMRKIGIEPDD 470


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/607 (38%), Positives = 375/607 (61%), Gaps = 8/607 (1%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  NG   +AL    EM   G++M F    ++L  C     +     +H ++IK   
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   LI  Y K   L DARK F +M   +VVSW ++I+AY Q      A   F++
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAG 208
           M  +  +P+  T  ++ +  A +   +  + +H  I++  +    + +G++++DMYAK G
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG 467

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVL 267
            +  A  VFE +P +DV+S   +I+GYAQ GL  EAIE+++ ++  + +I N  T+ S+L
Sbjct: 468 LLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + + AL  G ++H  V++  +   V +   LID+Y KCG L  +  +F  + + + +
Sbjct: 528 PAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +WNA++  +  HG   + ++LF  M +E  VKPD VT++++LS CSH G  + G   F  
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEG-VKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           + +   G +P ++HYGC+VD+LGRAG +  A +FIK+MP +P A+I G+LLGACR+H N+
Sbjct: 647 MQEY--GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNI 704

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G+F   RL E++ +N G YV+LSN+YA+ G+WE V +VR L +E+ + K PG S IE+
Sbjct: 705 ELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           ++ +  F+  ++SHP  +E+  +++ L+ K K  GY+PD S VL DV+E++KE +L  HS
Sbjct: 765 NRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 824

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ FG+I TP  +PIR+ KNLR+C DCHN  KF+S++  R++ +RD NRFHH  +G 
Sbjct: 825 ERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGI 884

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 885 CSCGDYW 891



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 197/374 (52%), Gaps = 6/374 (1%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           F  +  +L AC    TL  G+++H    K  ++  V++   LI  Y++      AR +FD
Sbjct: 218 FYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           +M  R++ SW AMIS   Q  ++ +AL++   M     + N  T  ++L  C        
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
              IH  +IK   E  ++V ++L++MYAK G + +AR  F+ +   DVVS  +II+ Y Q
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVV 296
                 A   F K+Q+ G   + +T  S+ + ++      + + VH  ++ R  +   VV
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+++DMY+K G L  + +VF+ +  + VISWN ++ GY+++G+  E +E++ +M E  
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK 514

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           ++ P+  T++++L   +H G   +G+ +   ++  K     ++    C++D+ G+ GR+ 
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI--KTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 417 EALEFIKNMPFEPT 430
           +A+     +P E +
Sbjct: 573 DAMSLFYQVPQESS 586



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 182/348 (52%), Gaps = 6/348 (1%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA ++       +++ TRL+  Y     +S +R  FD++ +++V +W +MISAY    H
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 140 SFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
             EA+  F ++L  S+  P+ +TF  VL +C        G++IH    K  F+ +++V +
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL+ MY++ G    AR +F+ +P RD+ S  A+ISG  Q G   +A+++  ++++EG+  
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N+VT  S+L     L  +     +H +V++  +   + + N+LI+MY+K G+L  +R+ F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
             M    V+SWN+++  Y ++         F  M + N  +PD +T +++ S  +     
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
               +V H  +  +     ++     VVDM  + G +  A +  + +P
Sbjct: 434 KNSRSV-HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP 480



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             K +H+L++ +     I++ + L+++YA  G +  +R  F+ +P++DV +  ++IS Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 237 QLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
             G   EAI  F +L +   I  ++ T+  VL A   L     G+++H    +      V
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNV 250

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +  SLI MYS+ G    +R +FD+M  R + SWNAM+ G  ++G   + +++ + MR E
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +K + VT +++L  C   G  D   A+   +   K G E ++     +++M  + G +
Sbjct: 311 G-IKMNFVTVVSILPVCPQLG--DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 416 GEALEFIKNM 425
            +A +  + M
Sbjct: 368 EDARKAFQQM 377


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 358/573 (62%), Gaps = 5/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  +  +LR G+ +H + ++  +   V + T L+  Y+KC  +  AR +FD M  +
Sbjct: 281 SILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK 340

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW +MI  Y Q      A+ +F +M+    E    T    L +CA     E G+ +H
Sbjct: 341 TVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVH 400

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+ +    S + V +SL+ MY+K  R+  A  +FE L  + +VS  A+I GYAQ G   
Sbjct: 401 KLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRIN 460

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI+ F K+Q++ +  +  T  SV+ AL+ L+ L   K +H  V+R  +   V +  +L+
Sbjct: 461 EAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALV 520

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG++  +R++FD M ER V +WNAM+ GY  HG+G+  +ELF  M++E  +KP+ 
Sbjct: 521 DMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKE-VIKPNE 579

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           VT+L VLS CSH G+ + G   F  +   KD G EP ++HYG +VD+LGRA R+ EA +F
Sbjct: 580 VTFLCVLSACSHSGLVEEGFQYFGSMK--KDYGLEPAMDHYGAMVDLLGRANRLNEAWDF 637

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+ MP EP  ++ G++LGACR+H NV++GE    R+ +++P++ G +V+L+N+YA+A  W
Sbjct: 638 IQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMW 697

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V RVR  M++K + K PG S +EL   +HTF++   SHP  +++ A ++ L  + K A
Sbjct: 698 DKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAA 757

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD + V +DV++  KE++L  HSEKLA+ F L+ T  G  I + KNLR+C DCHN  
Sbjct: 758 GYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNAT 816

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++S V  R++ +RD  RFHH  +GTCSCGDYW
Sbjct: 817 KYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 185/340 (54%), Gaps = 4/340 (1%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           LK    N  L  A+     M   G+      +  LL  C +   LR G+ +H  +I   +
Sbjct: 147 LKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF 206

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V+  T ++  Y KC  + +A KMFD M ER++V W  +IS Y+Q      AL L +R
Sbjct: 207 ASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLR 266

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M      P+  T  ++L + A      +G+ IH   +++ FES + V ++L+DMY+K G 
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  AR +F+ +  + VVS  ++I GY Q G    A+E+F+K+  E +    VT    L A
Sbjct: 327 VGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHA 386

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L  +  G+ VH  + + E+ S V + NSLI MYSKC  +  +  +F+N+  +T++SW
Sbjct: 387 CADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSW 446

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           NAM++GY+++G   E ++ F  M+ +N +KPDS T ++V+
Sbjct: 447 NAMILGYAQNGRINEAIDYFCKMQLQN-IKPDSFTMVSVI 485



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 202/371 (54%), Gaps = 4/371 (1%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
            +T+L+  + K   L +A ++F  + ++    +  M+  Y++ +   +A++ F RM    
Sbjct: 111 FQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDG 170

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P  + F  +L  C        GK+IH  +I + F S+++  + +++MYAK   + EA 
Sbjct: 171 VRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAY 230

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +F+ +PERD+V    IISGYAQ G  + A+EL  ++Q EG   + +T  S+L A++ + 
Sbjct: 231 KMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVG 290

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L  G+ +H + +R    S+V +  +L+DMYSKCGS+  +R +FD M+ +TV+SWN+M+ 
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY ++G     +E+F  M +E +V+  +VT +  L  C+  G  ++G  V H+++D  + 
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDE-QVEMTNVTVMGALHACADLGDVEQGRFV-HKLLDQLE- 407

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVDIGEFV 453
              ++     ++ M  +  RV  A E  +N+  +   +    +LG A     N  I  F 
Sbjct: 408 LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFC 467

Query: 454 GQRLMEIEPEN 464
             +L  I+P++
Sbjct: 468 KMQLQNIKPDS 478



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 179 KQIHS---LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           K++H    LIIK+   S     + L+ ++ K G +HEA  VF+ + ++       ++ GY
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           A+    ++A+  F +++ +G+      +  +L      A L  GK++H  ++     S V
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNV 210

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
                +++MY+KC  +  + ++FD M ER ++ WN ++ GY+++G G+  +EL   M+EE
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            K +PDS+T +++L   +  G    G ++       + GFE  +     +VDM  + G V
Sbjct: 271 GK-RPDSITIVSILPAVADVGSLRIGRSIHG--YSMRAGFESFVNVSTALVDMYSKCGSV 327

Query: 416 GEA 418
           G A
Sbjct: 328 GTA 330


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/607 (40%), Positives = 359/607 (59%), Gaps = 38/607 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA-------- 112
           Y TL+ AC+  R L  G+RVHAH   + + P + +  RLI  Y KC  L DA        
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIP 125

Query: 113 -----------------------RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                                  RK+FDEM  R+  SW A+IS Y  +    EAL+LF R
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLF-R 184

Query: 150 MLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
           M++ +  +  N FT ++ L + A       GK+IH  +I+S  E    V ++LLD+Y K 
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G ++EARG+F+ + ++D+VS T +I    + G  +E   LFR L   G+  N  T+A VL
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + LAA   GK+VH ++ R     +    ++L+ +YSKCG+   +RRVF+ M    ++
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 328 SWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           SW +++VGY+++G     ++ F +L+R  +  KPD +T++ VLS C+H G+ D GL  FH
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLR--SGTKPDEITFVGVLSACTHAGLVDIGLEYFH 422

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            + + K G     +HY CV+D+L R+GR  EA   I NMP +P   +  SLLG CR+H N
Sbjct: 423 SVKE-KHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGN 481

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           +++ E   + L E+EPEN   Y+ LSN+YA+AG W + T+VR  M  + + K PG+SWIE
Sbjct: 482 IELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIE 541

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           + + +H F   D SHP   ++   + +LS K KE GYV D + VL+DV+EEQKE+ +  H
Sbjct: 542 IKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYH 601

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLA+ FG+I T  G PI+V KNLR CVDCHN  K++SK+  RK+ +RD NRFH  V+G
Sbjct: 602 SEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDG 661

Query: 627 TCSCGDY 633
           +CSC DY
Sbjct: 662 SCSCKDY 668



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I  + Q+    EA++   R+     +P+   ++T++ +C      ELGK++H+    SN
Sbjct: 38  IIELFCQQNRLKEAVDYLHRI----PQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASN 93

Query: 190 FESHIYVGSSLLDMYAK-------------------------------AGRIHEARGVFE 218
           F   I + + L+ MYAK                                GRI +AR +F+
Sbjct: 94  FIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFD 153

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALG 277
            +P RD  S  A+ISGY   G   EA++LFR +Q  E    N  T +S L A + +++L 
Sbjct: 154 EMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLR 213

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK++H +++R  +    V+  +L+D+Y KCGSL  +R +FD M+++ ++SW  M+    
Sbjct: 214 RGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCF 273

Query: 338 KHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           + G  +E   LF +LM   + V+P+  T+  VL+ C+    E  G  V   +   + G++
Sbjct: 274 EDGRKKEGFSLFRDLM--GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMT--RVGYD 329

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           P       +V +  + G    A      MP
Sbjct: 330 PFSFAASALVHVYSKCGNTETARRVFNQMP 359



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 117/222 (52%), Gaps = 8/222 (3%)

Query: 52  LGLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           +G  +R  EY    +LNAC +    + G+ VH +M +  Y P  +  + L+  Y+KC   
Sbjct: 289 MGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNT 348

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
             AR++F++M   ++VSWT++I  Y+Q      AL  F  +LRS T+P+E TF  VL++C
Sbjct: 349 ETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSAC 408

Query: 170 AGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVS 227
             A   ++G +  HS+  K          + ++D+ A++GR  EA  + + +P + D   
Sbjct: 409 THAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFL 468

Query: 228 CTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
             +++ G   +  + L E A +   +L+ E   + Y+T +++
Sbjct: 469 WASLLGGCRIHGNIELAERAAKALFELEPENP-ATYITLSNI 509


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 365/590 (61%), Gaps = 3/590 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   GL+     +  +L A +    +  GQ++H+ +IKT +   V++   L+ FY+K
Sbjct: 238 FVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 297

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            + + DARK+FDEM E++ VS+  +IS Y+       A +LF  +  +  +  +F FAT+
Sbjct: 298 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 357

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L+  +    +E+G+QIH+  I +  +S I VG+SL+DMYAK G+  EA  +F  L  R  
Sbjct: 358 LSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 417

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           V  TA+IS Y Q G  EE ++LF K++   +I++  T+AS+L A + +A+L  GKQ+HS 
Sbjct: 418 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 477

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++    S V   ++L+D+Y+KCGS+  + + F  M +R ++SWNAM+  Y+++G     
Sbjct: 478 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEAT 537

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++ F  M     ++PDSV++L VLS CSH G+ + GL  F+ +       +P  EHY  V
Sbjct: 538 LKSFKEMVLSG-LQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYK-LDPRREHYASV 595

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP-EN 464
           VDML R+GR  EA + +  MP +P   +  S+L ACR+H N ++      +L  +E   +
Sbjct: 596 VDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRD 655

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           A  YV +SN+YA+AG+WE+V++V + M+++ V K P  SW+E+    H F A+DR HP  
Sbjct: 656 AAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQI 715

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           EE+  K+  L+   +E GY PD SC L++ DE+ K + L  HSE+LA+ F LI TPEG+P
Sbjct: 716 EEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSP 775

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I V+KNLR C+DCH   K +SK+ GR++++RD  RFHH  +G CSCGD+W
Sbjct: 776 ILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 203/381 (53%), Gaps = 3/381 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G E  +  + TLL+ C          +V   +IK  Y   + +   L+  Y K
Sbjct: 137 FVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L  A ++F EM E + VS+ AMI+ YS+     +A+NLF+ M  S  +P EFTFA V
Sbjct: 197 SNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAV 256

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +  G     LG+QIHS +IK+NF  +++V ++LLD Y+K   + +AR +F+ +PE+D 
Sbjct: 257 LCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDG 316

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS   IISGYA  G  + A +LFR+LQ          +A++L+  S       G+Q+H+ 
Sbjct: 317 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 376

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            +     S +++ NSL+DMY+KCG    +  +F N++ R+ + W AM+  Y + G   E 
Sbjct: 377 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++LFN MR+ + V  D  T+ ++L   +       G  +   I+  K GF   +     +
Sbjct: 437 LQLFNKMRQAS-VIADQATFASLLRASASIASLSLGKQLHSFII--KSGFMSNVFSGSAL 493

Query: 406 VDMLGRAGRVGEALEFIKNMP 426
           +D+  + G + +A++  + MP
Sbjct: 494 LDVYAKCGSIKDAVQTFQEMP 514



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 184/333 (55%), Gaps = 15/333 (4%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y K   L +ARK+FD M ER  V+WT +I  YSQ     EA  LF++M R  TEP+
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 159 EFTFATVLTSCAGAFGFELGKQI---HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             TF T+L+ C    G E+G QI    + IIK  ++S + VG++L+D Y K+ R+  A  
Sbjct: 149 YVTFVTLLSGCN---GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQ 205

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +PE D VS  A+I+GY++ GLDE+A+ LF ++Q  G+     T+A+VL A  GL  
Sbjct: 206 LFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDD 265

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G+Q+HS V++      V + N+L+D YSK  S+  +R++FD M E+  +S+N ++ G
Sbjct: 266 IVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISG 325

Query: 336 YSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHE-IVDCK 392
           Y+  G  +     F+L RE      D     +  +LS  S+    + G  +  + IV   
Sbjct: 326 YAWDGKHKYA---FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           D    EI     +VDM  + G+  EA     N+
Sbjct: 383 DS---EILVGNSLVDMYAKCGKFEEAEMIFTNL 412



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           ++  Y K+G + EAR +F+ + ER  V+ T +I GY+QL   +EA ELF ++Q  G   +
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           YVT+ ++L+  +G        QV + +++    S +++ N+L+D Y K   L  + ++F 
Sbjct: 149 YVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK 208

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M E   +S+NAM+ GYSK G+  + V LF  M + + +KP   T+ AVL  C++ G++D
Sbjct: 209 EMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEM-QNSGLKPTEFTFAAVL--CANIGLDD 265

Query: 380 RGLA-VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             L    H  V  K  F   +     ++D   +   V +A +    MP
Sbjct: 266 IVLGQQIHSFV-IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            V  N +I  Y K G+L  +R++FD M ERT ++W  ++ GYS+    +E  ELF  M +
Sbjct: 83  TVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM-Q 141

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
               +PD VT++ +LSGC+   M ++   V  +I+  K G++  +     +VD   ++ R
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQII--KLGYDSRLIVGNTLVDSYCKSNR 199

Query: 415 VGEALEFIKNMP 426
           +  A +  K MP
Sbjct: 200 LDLACQLFKEMP 211


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/644 (39%), Positives = 374/644 (58%), Gaps = 32/644 (4%)

Query: 22  TVPSFPPNPQNLKT-------LCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQ 71
           T  +F P   ++ T       L   G+  +A   L +M +LG+      + + L AC   
Sbjct: 236 TAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRL 295

Query: 72  RTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWT 128
             L  G+ +HA ++K        ++ + L+  Y   E ++ AR++FD + E  R +  W 
Sbjct: 296 EMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWN 355

Query: 129 AMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           AMI  Y+Q     EAL LF RM   +   P+E T + VL +CA + GF   + +H  ++K
Sbjct: 356 AMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVK 415

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
                + +V ++L+DMYA+ G +  AR +F  +  RDVVS   +I+G    G   EA +L
Sbjct: 416 RGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQL 475

Query: 248 FRKLQV------------EG----MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
             ++Q+            EG     + N +T  ++L   + LAA   GK++H + +R  +
Sbjct: 476 VTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHAL 535

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S + + ++L+DMY+KCG L  SR VFD +  R VI+WN +++ Y  HG+G E V LF+ 
Sbjct: 536 ESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDE 595

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M    +  P+ VT++A L+ CSH G+ DRGL +FH + +   G +P  + + CVVD+LGR
Sbjct: 596 MAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGM-ERDHGVKPTPDLHACVVDVLGR 654

Query: 412 AGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           AGR+ EA   I +M P E   +   SLLGACR+H NV++GE   +RL E+EP  A +YV+
Sbjct: 655 AGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVL 714

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           L N+Y++AG W+    VR  M+ + V K+PG SWIELD  +H F A + SHP   E+ A 
Sbjct: 715 LCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAH 774

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           +  L  + +  GY PD SCVL+DVDE++K  +L  HSEKLA+ FGL+  P GA IRV KN
Sbjct: 775 MDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKN 834

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH  AKF+SK+ GR + LRD  RFHH  +G+CSCGDYW
Sbjct: 835 LRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 184/380 (48%), Gaps = 30/380 (7%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLR---TRLIVFYNKCECLSDARKMFDEMRER------NVV 125
           R G+  HA  +K  +      R     L+  Y +   + DA+ +F            +VV
Sbjct: 189 RLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVV 248

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           +W  MIS   Q     EA+ +   M+     P+  TFA+ L +C+      LG+++H+++
Sbjct: 249 TWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308

Query: 186 IK-SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDE 242
           +K ++  ++ +V S+L+DMYA   ++  AR VF+ +PE  R +    A+I GYAQ G+DE
Sbjct: 309 LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDE 368

Query: 243 EAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EA+ELF +++ E G   +  T + VL A +        + +H +V++  +     +QN+L
Sbjct: 369 EALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNAL 428

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-------- 353
           +DMY++ G +  +RR+F  +  R V+SWN ++ G    G   E  +L   M+        
Sbjct: 429 MDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSS 488

Query: 354 -------EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
                  E ++  P+++T + +L GC+      RG  +    V  +   E +I     +V
Sbjct: 489 SSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAV--RHALESDIAVGSALV 546

Query: 407 DMLGRAGRVGEALEFIKNMP 426
           DM  + G +  +      +P
Sbjct: 547 DMYAKCGCLAASRAVFDRLP 566



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 65/361 (18%)

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           VG++LL  YA+ G +  A  +F       RD VS  ++IS        E A++  R +  
Sbjct: 102 VGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLA 161

Query: 254 EGM--ISNYVTYASVLTALSGLAALGH---GKQVHSHVLR---FEIPSYVVLQNSLIDMY 305
           EG   +S++ T  SVL A S L        G++ H+  L+    +        N+L+ MY
Sbjct: 162 EGRHDVSSF-TLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMY 220

Query: 306 SKCGSLTYSRRVFDNMSER------TVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           ++ G +  ++ +F   +         V++WN M+    + G   E VE+   M     V+
Sbjct: 221 ARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLG-VR 279

Query: 360 PDSVTYLAVLSGCSHGGM------------EDRGLA----VFHEIVDCKDGFE------- 396
           PD VT+ + L  CS   M            +D  LA    V   +VD   G E       
Sbjct: 280 PDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARR 339

Query: 397 -----PE----IEHYGCVVDMLGRAGRVGEALEFIKNMPFE----PTAAILGSLLGACRV 443
                PE    +  +  ++    +AG   EALE    M  E    P+   +  +L AC  
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR 399

Query: 444 HYNVDIGEFVGQRLME---IEPENAGNYVI---LSNLYASAGRWEDVTRVRELMKEKAVT 497
                   F G+  M    ++   AGN  +   L ++YA  G  +   R+  ++  + V 
Sbjct: 400 SEG-----FAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVV 454

Query: 498 K 498
            
Sbjct: 455 S 455


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/590 (40%), Positives = 364/590 (61%), Gaps = 3/590 (0%)

Query: 46   LIEMATLGLEMRFEEYDTLLNACVNQ-RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
             I++   GL+       ++L AC +    L   +++H H +KT      ++ T LI  Y+
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYS 1052

Query: 105  KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
            K   + +A  +F    + ++  W AM+  Y       +AL LF  + +S  + ++ T AT
Sbjct: 1053 KSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLAT 1112

Query: 165  VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
               +C      + GKQIH+  IK+ F+S ++V S +LDMY K G +  A  VF  +   D
Sbjct: 1113 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 1172

Query: 225  VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
             V+ T++ISG    G +++A+ ++ +++   ++ +  T+A+++ A S + AL  G+Q+H+
Sbjct: 1173 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 1232

Query: 285  HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            +V++ +  S   +  SL+DMY+KCG++  + R+F  M+ R +  WNAMLVG ++HG   E
Sbjct: 1233 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 1292

Query: 345  VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
             V LF  M+    ++PD V+++ +LS CSH G+        H + +   G EPEIEHY C
Sbjct: 1293 AVNLFKSMKSHG-IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN-DYGIEPEIEHYSC 1350

Query: 405  VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
            +VD LGRAG V EA + I+ MPF+ +A+I  +LLGACR+  +V+ G+ V  RL  +EP +
Sbjct: 1351 LVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFD 1410

Query: 465  AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            +  YV+LSN+YA+A RW+DVT  R++MK K V KDPG SWI++  +LH F   DRSHP  
Sbjct: 1411 SAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQA 1470

Query: 525  EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
            + +  KV+++    +E GYVPD   VL DV++E+KE+ L  HSEKLA+ +GLI TP    
Sbjct: 1471 DIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTT 1530

Query: 585  IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            IRVIKNLR+C DCHN  K++SKV+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 1531 IRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 228/470 (48%), Gaps = 19/470 (4%)

Query: 18   QQQLTVPSFPPNPQNLKTLCSNGQLTKAL------------IEMATLGLEMRFEEYDTLL 65
            Q Q        +  N    C N +L++ L            + M  L ++        +L
Sbjct: 852  QVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVL 911

Query: 66   NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV 125
             A      L  G++VH   +K+     V +   L+  Y+K  C   AR++F++M+  +++
Sbjct: 912  AAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLI 971

Query: 126  SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF-GFELGKQIHSL 184
            SW +MIS+ +Q +   E++NLFI +L    +P+ FT A+VL +C+    G  + +QIH  
Sbjct: 972  SWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVH 1031

Query: 185  IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
             +K+   +  +V ++L+D+Y+K+G++ EA  +F+   + D+    A++ GY      ++A
Sbjct: 1032 ALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKA 1091

Query: 245  IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            +ELF  +   G  S+ +T A+   A   L  L  GKQ+H+H ++    S + + + ++DM
Sbjct: 1092 LELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDM 1151

Query: 305  YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
            Y KCG +  +  VF+ +S    ++W +M+ G   +G   + + +++ MR +++V PD  T
Sbjct: 1152 YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR-QSRVMPDEYT 1210

Query: 365  YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            +  ++   S     ++G  +   ++      +P +     +VDM  + G + +A    K 
Sbjct: 1211 FATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKK 1268

Query: 425  MPFEPTAAILGSLLGACRVHYNVD--IGEFVGQRLMEIEPENAGNYVILS 472
            M     A     L+G  + H N +  +  F   +   IEP+      ILS
Sbjct: 1269 MNVRNIALWNAMLVGLAQ-HGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 1317



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 165/368 (44%), Gaps = 35/368 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL   ++   L  G+  HA ++ +      +L   L+  Y+KC  LS AR++FD   ER+
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 124 VVSWTAMISAY-----SQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFEL 177
           +V+W A++ AY     S   ++ E L+LF R+LR+        T A VL  C  +     
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            + +H   IK   E  ++V  +L+++Y+K GR+ +AR +F+ + ERDVV    ++ GY Q
Sbjct: 746 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           LGL++EA +LF +    G+  +  +   +L  +S +     GK +   V           
Sbjct: 806 LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NWDEGKWLADQV----------- 853

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
                          Y+ ++  +     V  WN  L      G     +E F  M   N 
Sbjct: 854 -------------QAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLN- 899

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +  D+VT L VL+  +  G +D  L      +  K G + ++     +V+M  + G    
Sbjct: 900 IDYDAVTLLVVLAAVA--GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 957

Query: 418 ALEFIKNM 425
           A E   +M
Sbjct: 958 AREVFNDM 965


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/576 (40%), Positives = 362/576 (62%), Gaps = 7/576 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + L AC     +  G+ + A  + + Y     ++  LI  Y+KC  L  ARK+FD ++
Sbjct: 166 FSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK 225

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V++W  MIS Y+++  + +AL LF RM  +D +PN  TF  +LT+C      E G+ 
Sbjct: 226 NRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           IH  + +  +ES + +G+ LL+MY K +  + EAR VFE +  RDV++   +I  Y Q G
Sbjct: 286 IHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYG 345

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             ++A+++F+++Q+E +  N +T ++VL+A + L A   GK VH+ +      + VVL+N
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL++MY++CGSL  +  VF  + +++++SW+ ++  Y++HG  R  +E F  + +E  + 
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEG-LA 464

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D VT ++ LS CSHGGM   G+  F  +V    G  P+  H+ C+VD+L RAGR+  A 
Sbjct: 465 ADDVTMVSTLSACSHGGMLKEGVQTFLSMVG-DHGLAPDYRHFLCMVDLLSRAGRLEAAE 523

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-ILSNLYASA 478
             I +MPF P A    SLL  C++H +      V  +L E+E E+  + V +LSN+YA A
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GRW+DV + R     +A  K+PG S+IE++  +H F A D+SHP  E ++A++K+LS + 
Sbjct: 584 GRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQM 640

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K+AGYVPDM  VL++V EE+KE++L  HSEKLA+ +GLI TP G P+ ++KNLR CVDCH
Sbjct: 641 KDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCH 700

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             AKF+S++ GRK+ +RD  RFHH   G+CSC DYW
Sbjct: 701 AAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 201/360 (55%), Gaps = 8/360 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +  C + + L+ GQ +HA +++T      + L T LI  Y +C  L  ARK FDEM ++ 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE---PNEFTFATVLTSCAGAFGFELGKQ 180
           +V+W A+I+ YS+      AL ++  M+    E   P+  TF++ L +C        G++
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I +  + S + S   V ++L++MY+K G +  AR VF+ L  RDV++   +ISGYA+ G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A+ELF+++       N VT+  +LTA + L  L  G+ +H  V      S +V+ N 
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 301 LIDMYSKC-GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           L++MY+KC  SL  +R+VF+ M  R VI+WN ++V Y ++G  ++ +++F  M+ EN V 
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN-VA 363

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +T   VLS C+  G + +G AV   I   +   +  +E+   +++M  R G + + +
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDDTV 421



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 227/451 (50%), Gaps = 58/451 (12%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC  ++DA  +F  +   N VSWT +++A+++  H  EAL  + RM+     P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           F   +  C+ +   + G+ +H++I+++   E  I +G++L+ MYA+   +  AR  F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKL---QVEGMISNYVTYASVLTALSGLAALG 277
            ++ +V+  A+I+GY++ G    A+++++ +     EGM  + +T++S L A + +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+++ +  +     S  ++QN+LI+MYSKCGSL  +R+VFD +  R VI+WN M+ GY+
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           K G   + +ELF  M   N  KP+ VT++ +L+ C++    ++G A+  ++ +  DG+E 
Sbjct: 241 KQGAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRE--DGYES 297

Query: 398 EIEHYGCVVDMLGRA--------------------------------GRVGEALEFIKNM 425
           ++     +++M  +                                 G+  +AL+  K M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 426 PFE---PTAAILGSLLGACRVHYNVDIGEFV------GQRLMEIEPENAGNYVILSNLYA 476
             E   P    L ++L AC V      G+ V      G+   ++  EN+     L N+Y 
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENS-----LMNMYN 412

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
             G  +D   V   +++K++      SW  L
Sbjct: 413 RCGSLDDTVGVFAAIRDKSLV-----SWSTL 438


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 376/621 (60%), Gaps = 23/621 (3%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-C 88
           L +LC N Q  +AL    EM   G+E       ++L AC +   LR G+ +HA+ +K   
Sbjct: 270 LSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGS 329

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                ++ + L+  Y  C+ +    ++FD M +R +  W AMI+ Y+Q  +  EAL LFI
Sbjct: 330 LDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFI 389

Query: 149 RMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            M  S     N  T A V+ +C  +  F   + IH  ++K   +   +V ++L+DMY++ 
Sbjct: 390 EMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRL 449

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-----------EGM 256
           G+I  A+ +F  + +RD+V+   II+GY      E+A+ +  K+Q+             +
Sbjct: 450 GKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSL 509

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N +T  ++L + + L+AL  GK++H++ ++  + + V + ++L+DMY+KCG L  SR+
Sbjct: 510 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 569

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD +  R VI+WN +++ Y  HG  ++ +++  +M  +  VKP+ VT+++V + CSH G
Sbjct: 570 VFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQG-VKPNEVTFISVFAACSHSG 628

Query: 377 MEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAI 433
           M + GL +F+ +   KD G EP  +HY CVVD+LGRAGRV EA + I  +P  F+   A 
Sbjct: 629 MVNEGLKIFYNMK--KDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGA- 685

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             SLLGACR+H N++IGE   Q L+++EP  A +YV+L+N+Y+SAG W   T VR  MK 
Sbjct: 686 WSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKA 745

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           + V K+PG SWIE    +H F A D SHP  E+L   ++ L  + ++ GY+PD SCVL++
Sbjct: 746 QGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHN 805

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           V+E++KE +L GHSEKLA+ FG++ T  G  IRV KNLR+C DCH   KF+SKV  R++ 
Sbjct: 806 VEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREII 865

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           LRD  RFHH   GTCSCGDYW
Sbjct: 866 LRDVRRFHHFKNGTCSCGDYW 886



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNK 105
           I+M  LG++     +  LL A  + + +  G+++HAH+ K  Y    V +   L+  Y K
Sbjct: 82  IDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRK 141

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C       K+FD + ERN VSW ++IS+         AL  F  ML  D EP+ FT  +V
Sbjct: 142 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSV 201

Query: 166 LTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             +C+      G  +GKQ+H+  ++   E + ++ ++L+ MY K G++  ++ +      
Sbjct: 202 ALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEG 260

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD+V+   ++S   Q     EA+E  R++ +EG+  +  T +SVL A S L  L  GK++
Sbjct: 261 RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320

Query: 283 HSHVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           H++ L+    +  S+V   ++L+DMY  C  +    RVFD M +R +  WNAM+ GY+++
Sbjct: 321 HAYALKNGSLDENSFV--GSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQN 378

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
               E + LF  M E   +  +S T   V+  C   G   +  A+   +V  K G + + 
Sbjct: 379 EYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVV--KRGLDRDR 436

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM 425
                ++DM  R G++  A      M
Sbjct: 437 FVQNALMDMYSRLGKIDIAKRIFGKM 462



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 8/238 (3%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSL 200
           EA+  +I M+    +P+ F F  +L + A     +LGKQIH+ + K  +    + V ++L
Sbjct: 76  EAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTL 135

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           +++Y K G       VF+ + ER+ VS  ++IS        E A+E FR +  E +  + 
Sbjct: 136 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSS 195

Query: 261 VTYASVLTALSGLA---ALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            T  SV  A S       L  GKQVH++ LR  E+ S+++  N+L+ MY K G L  S+ 
Sbjct: 196 FTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII--NTLVAMYGKMGKLASSKV 253

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           +  +   R +++WN +L    ++    E +E    M  E  V+PD  T  +VL  CSH
Sbjct: 254 LLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEG-VEPDGFTISSVLPACSH 310


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/572 (40%), Positives = 353/572 (61%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L A  +   L  G+ +H + I+  +   V + T L   Y+KC  +  AR +FD M ++
Sbjct: 253 TVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQK 312

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW +M+  Y Q     +A+ +F +ML    +P   T    L +CA     E GK +H
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + + N  S I V +SL+ MY+K  R+  A  +F  L  R  VS  A+I GYAQ G   
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  F +++  GM  +  T  SV+ AL+ L+   H K +H  ++R  +   + +  +L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG++  +R++FD +S+R VI+WNAM+ GY  HG+GR  ++LF+ M+ +  V+P+ 
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMK-KGAVEPND 551

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +TYL+V+S CSH G+ D GL  F  +     G EP ++HYG +VD+LGRAGR+ EA +FI
Sbjct: 552 ITYLSVISACSHSGLVDEGLRHFKSMKQ-DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFI 610

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           +NMP  P   + G+  GAC++H N+++GE   ++L E+ P+  G +V+L+N+YAS  +W 
Sbjct: 611 ENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWS 670

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  VR+ M++K + K PG S +EL   +H+F++   +HP  + + A +++L  + K AG
Sbjct: 671 KVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAG 730

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD + +L DV+++ +E++L  HSEKLA+ FGL+ T  G  I V KNLR+C DCHN  K
Sbjct: 731 YVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATK 789

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++S V GR++ +RD  RFHH   G CSCGDYW
Sbjct: 790 YISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 187/344 (54%), Gaps = 12/344 (3%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMI 85
           LK    N  L  AL  +      MR+++       +  LL  C +   L+ G+ +H  +I
Sbjct: 119 LKGYAKNSSLETALAFLC----RMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
              +   V+  T ++  Y KC  + DA KMFD M ER++VSW  +I+ +SQ   + +AL 
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           L +RM      P+  T  TVL + A      +GK IH   I++ F   + + ++L DMY+
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G +  AR +F+ + ++ VVS  +++ GY Q G  E+AI +F K+  EG+    VT   
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            L A + L  L  GK VH  V +  + S + + NSLI MYSKC  +  +  +F+N++ RT
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +SWNAM++GY+++G   E +  F+ M+    +KPDS T ++V+
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLG-MKPDSFTMVSVI 457



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 195/362 (53%), Gaps = 6/362 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C + + L    ++   +IK         +T+L+  ++K   +++A ++F+ + ++ 
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
              +  M+  Y++ +    AL    RM   D +P  + F  +L  C      + GK+IH 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +I ++F ++++  + +++MYAK  +I +A  +F+ +PERD+VS   II+G++Q G  ++
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+EL  ++Q EG   + +T  +VL A + +  L  GK +H + +R      V +  +L D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+  +R +FD M ++TV+SWN+M+ GY ++G   + + +F  M EE  + P  V
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG-IDPTGV 350

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T +  L  C+  G  +RG  V H+ VD +     +I     ++ M  +  RV  A +   
Sbjct: 351 TIMEALHACADLGDLERGKFV-HKFVD-QLNLGSDISVMNSLISMYSKCKRVDIASDIFN 408

Query: 424 NM 425
           N+
Sbjct: 409 NL 410



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG++++AL    EM +LG++       +++ A       R  + +H  +I++C    +++
Sbjct: 428 NGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFV 487

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T L+  Y+KC  +  ARK+FD + +R+V++W AMI  Y        AL+LF +M +   
Sbjct: 488 TTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAV 547

Query: 156 EPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           EPN+ T+ +V+++C+ +   + G +   S+      E  +    +++D+  +AGRI EA 
Sbjct: 548 EPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAW 607

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEE-----AIELFRKLQVEGMISNYVTYASVLTA 269
              E +P    ++      G  ++  + E     A +LF     EG    +V  A++  +
Sbjct: 608 DFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEG--GYHVLLANIYAS 665

Query: 270 LSGLAALGHGKQVHSHVLRFEIP--SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            S  + +   ++        + P  S V L+N +   YS   +   S+R++  + E
Sbjct: 666 TSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEE 721


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 376/625 (60%), Gaps = 37/625 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   + L  GQ++H H++K  Y   +Y+ T LI  Y
Sbjct: 51  KLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMY 110

Query: 104 NKCECLSDA-------------------------------RKMFDEMRERNVVSWTAMIS 132
            +   L DA                               RK+FDE+  ++VVSW AMIS
Sbjct: 111 AQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMIS 170

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y +  +  EAL L+  M++++ +P+E T  TV+++CA +   ELG+Q+HS I    F S
Sbjct: 171 GYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGS 230

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +I + + L+D+Y+K G +  A G+F+ L ++DV+S   +I G+  + L +EA+ LF+++ 
Sbjct: 231 NIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEML 290

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  SVL A + L A+  G+ +H ++ +    + +   L  SLIDMY+KCG 
Sbjct: 291 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGD 350

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +++VFD+M  R++ SWNAM+ G++ HG      +LF+ MR+ N + PD +T++ +LS
Sbjct: 351 IEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRK-NGIDPDDITFVGLLS 409

Query: 371 GCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH GM D G  +F  +  D K    P++EHYGC++D+LG  G   EA E I+ MP EP
Sbjct: 410 ACSHSGMLDLGRHIFRSMSQDYK--ITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEP 467

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC++H NV++GE   Q L++IEPEN G+YV+LSN+YA+AGRW+ V ++R 
Sbjct: 468 DGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRT 527

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+ +K + K PG S IE+D ++H F   D+ HP   E+   ++++ +  +E G+VPD S 
Sbjct: 528 LLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSE 587

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y 
Sbjct: 588 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 647

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD+ R H + +G  SC DYW
Sbjct: 648 REIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 187/388 (48%), Gaps = 33/388 (8%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           LS A  +F+ ++E N++ W  M   ++  + S  AL L++ M+     PN ++F  +L S
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +     G+QIH  ++K  ++  +YV +SL+ MYA+ GR+ +A  VF+    R VVS 
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV--------------------- 261
           TA+I+GYA  G    A +LF ++ V+       MIS YV                     
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 262 ----TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
               T  +V++A +   ++  G+Q+HS +      S + + N LID+YSKCG +  +  +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  ++++ VISWN ++ G++   + +E + LF  M    +  P+ VT L+VL  C+H G 
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSVLPACAHLGA 313

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            D G  +   I     G          ++DM  + G +  A +   +M     ++    +
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373

Query: 438 LG-ACRVHYNVDIGEFVGQRLMEIEPEN 464
            G A     N     F   R   I+P++
Sbjct: 374 FGFAMHGKANAAFDLFSKMRKNGIDPDD 401


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/623 (39%), Positives = 364/623 (58%), Gaps = 38/623 (6%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI------ 100
           + M + G E     + ++  +C   R    G++VHAH++K       ++ T LI      
Sbjct: 117 VHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQN 176

Query: 101 --------VF-----------------YNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
                   VF                 Y     L +AR++FDE+  R+VVSW AMIS Y+
Sbjct: 177 GELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYA 236

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHI 194
           Q     EA+  F  M R+   PN  T  +VL++CA      +LG  + S I      S+I
Sbjct: 237 QSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNI 296

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
            + + L+DMY K G + EA  +FE + +++VVS   +I GY  +   +EA+ LFR++   
Sbjct: 297 RLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQS 356

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLT 312
            +  N VT+ S+L A + L AL  GK VH++V +    + + V L  SLIDMY+KCG L 
Sbjct: 357 NIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLA 416

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            ++R+FD M+ +++ +WNAM+ G++ HG     + LF+ M  E  V PD +T++ VL+ C
Sbjct: 417 VAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFV-PDDITFVGVLTAC 475

Query: 373 SHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
            H G+   G   F  ++ D K    P++ HYGC++D+ GRAG   EA   +KNM  +P  
Sbjct: 476 KHAGLLSLGRRYFSSMIQDYK--VSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDG 533

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           AI  SLLGACR+H  +++ E V + L E+EPEN   YV+LSN+YA AGRWEDV ++R  +
Sbjct: 534 AIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRL 593

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
            +  + K PG S IE+D ++H F   D+ HP   E+   + ++ ++ ++AG+VPD S VL
Sbjct: 594 NDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVL 653

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           YD+DEE KE VL  HSEKLA+ FGLI T  G  IR++KNLR+C +CH+  K +SK++ R+
Sbjct: 654 YDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNRE 713

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +  RD+NRFHH  +G+CSC DYW
Sbjct: 714 IIARDRNRFHHFKDGSCSCKDYW 736



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 208/428 (48%), Gaps = 45/428 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC-----LSDARKMFD 117
           TLL+ C   +TL+  +++H+ +IKT      +  ++LI F   C       LS A  +F 
Sbjct: 33  TLLSNC---KTLQTLKQIHSQIIKTGLHNTHFALSKLIEF---CAVSPHGDLSYALSLFK 86

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            +R  N V W  MI   S     F AL  ++ M+ S TEPNE+TF ++  SC    G   
Sbjct: 87  TIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHE 146

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---------------------------- 209
           GKQ+H+ ++K   E + +V +SL++MYA+ G                             
Sbjct: 147 GKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYAS 206

Query: 210 ---IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
              + EAR +F+ +P RDVVS  A+ISGYAQ G  EEA+  F +++   +  N  T  SV
Sbjct: 207 KGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSV 266

Query: 267 LTALS-GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           L+A +   ++L  G  V S +    + S + L N LIDMY KCG L  +  +F+ + ++ 
Sbjct: 267 LSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKN 326

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V+SWN M+ GY+     +E + LF  M + N + P+ VT+L++L  C++ G  D G  V 
Sbjct: 327 VVSWNVMIGGYTHMSCYKEALGLFRRMMQSN-IDPNDVTFLSILPACANLGALDLGKWVH 385

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVH 444
             +       +  +  +  ++DM  + G +  A      M  +  A     + G A   H
Sbjct: 386 AYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGH 445

Query: 445 YNVDIGEF 452
            +  +G F
Sbjct: 446 TDTALGLF 453


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 366/578 (63%), Gaps = 11/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++  C N + LR  +++H  ++K  +     +RT L+V Y+KC  + DA ++F E  
Sbjct: 302 FASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETG 361

Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              NVVSWTAMIS + Q     EA+ LF  M R    PNEFT++ +LT    A       
Sbjct: 362 FLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILT----ALPVISPS 417

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H+ ++K+N+E    VG++LLD Y K G++ EA  VF  +  +D+V+ +A+++GYAQ G
Sbjct: 418 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALGHGKQVHSHVLRFEIPSYVVLQ 298
             E AI++F +L   G+  N  T++S+L   +   A++G GKQ H   ++  + S + + 
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+ MY+K G +  +  VF    E+ ++SWN+M+ GY++HG   + +++F  M++  KV
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR-KV 596

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           K DSVT++ V + C+H G+ + G   F  +V DCK    P  EH  C+VD+  RAG++ +
Sbjct: 597 KMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK--IAPTKEHNSCMVDLYSRAGQLEK 654

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A++ I NMP    + I  ++L ACRVH   ++G    ++++ + PE++  YV+LSN+YA 
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAE 714

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           +G W++  +VR+LM E+ V K+PG SWIE+    + F A DRSHP+++++  K++ LS +
Sbjct: 715 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTR 774

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+ GY PD S VL D+D+E KE VL  HSE+LA+ FGLI TP+G+P+ +IKNLR+C DC
Sbjct: 775 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 834

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHI-VEGTCSCGDYW 634
           H   K ++K+  R++ +RD NRFHH   +G CSCGD+W
Sbjct: 835 HVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 183/332 (55%), Gaps = 2/332 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           + T+  + +  LG+EM    + ++L           G+++H   IK  +   V + T L+
Sbjct: 80  EATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLV 139

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y K     D R +FDEM+ERNVV+WT +IS Y++ + + E L LF+RM    T+PN F
Sbjct: 140 DTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSF 199

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TFA  L   A       G Q+H++++K+  +  I V +SL+++Y K G + +AR +F+  
Sbjct: 200 TFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT 259

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
             + VV+  ++ISGYA  GLD EA+ +F  +++  +  +  ++AS++   + L  L   +
Sbjct: 260 EVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTE 319

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           Q+H  V+++       ++ +L+  YSKC ++  + R+F        V+SW AM+ G+ ++
Sbjct: 320 QLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQN 379

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
               E V LF+ M+ +  V+P+  TY  +L+ 
Sbjct: 380 DGKEEAVGLFSEMKRKG-VRPNEFTYSVILTA 410



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 152/263 (57%), Gaps = 1/263 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +FD+  +R+  S+T+++  +S+   + EA  LF+ +     E +   F++VL   A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 G+Q+H   IK  F   + VG+SL+D Y K     + R VF+ + ER+VV+ T +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ISGYA+  L+EE + LF ++Q EG   N  T+A+ L  L+     G G QVH+ V++  +
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              + + NSLI++Y KCG++  +R +FD    ++V++WN+M+ GY+ +G+  E + +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 352 MREENKVKPDSVTYLAVLSGCSH 374
           MR  N V+    ++ +++  C++
Sbjct: 290 MR-LNHVRLSESSFASIIKLCAN 311



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 3/214 (1%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           A + R++ A  +F+  P+RD  S T+++ G+++ G  +EA  LF  +Q  GM  +   ++
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           SVL   + L     G+Q+H   ++F     V +  SL+D Y K  +    R VFD M ER
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER 161

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V++W  ++ GY+++ +  EV+ LF  M++E   +P+S T+ A L   +  G+  RGL V
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEG-TQPNSFTFAAALGVLAEEGVGGRGLQV 220

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            H +V  K+G +  I     ++++  + G V +A
Sbjct: 221 -HTVV-VKNGLDKTIPVSNSLINLYLKCGNVRKA 252


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/558 (41%), Positives = 345/558 (61%), Gaps = 5/558 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++H H IKT      ++ T LI  Y++  C+ +A  +F      ++V+W AM+S Y+Q 
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQS 502

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               + L LF  M +     ++FT ATVL +C   F    GKQ+H+  IKS ++  ++V 
Sbjct: 503 HDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 562

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           S +LDMY K G +  A+  F+ +P  D V+ T +ISG  + G +E A+ +F ++++ G++
Sbjct: 563 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL 622

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T A++  A S L AL  G+Q+H++ L+    S   +  SL+DMY+KCGS+  +  +
Sbjct: 623 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCL 682

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +    + +WNAMLVG ++HG G+E ++LF  M E   +KPD VT++ VLS CSH G+
Sbjct: 683 FKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQM-ESLGIKPDKVTFIGVLSACSHSGL 741

Query: 378 EDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
                     +   +D G +PEIEHY C+ D LGRAG V EA   I +M  E +A++  +
Sbjct: 742 VSEAYKYIRSMH--RDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRT 799

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL ACRV  + + G+ V  +L+E+EP ++  YV+LSN+YA+A +W+++   R +MK   V
Sbjct: 800 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 859

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            KDPG SWIE+   +H F   DRS+P  E +  KVK +    K+ GYVP+    L DV+E
Sbjct: 860 KKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEE 919

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E+KE+ L  HSEKLA+ FGL+ TP   PIRVIKNLR+C DCHN  K++SKVY R++ LRD
Sbjct: 920 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRD 979

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFH   +G CSCGDYW
Sbjct: 980 ANRFHRFKDGICSCGDYW 997



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 197/401 (49%), Gaps = 9/401 (2%)

Query: 42  LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101
           L K  ++M    LE     +  +L   V   +L  GQ+VH   +K      + +   LI 
Sbjct: 306 LLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLIN 365

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y K   +  AR +F+ M ER+++SW ++I+  +Q     EA+ LF+++LR   +P+ +T
Sbjct: 366 MYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYT 425

Query: 162 FATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
             +VL + +    G  L KQIH   IK+N  +  +V ++L+D Y++   + EA  +F   
Sbjct: 426 MTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFG-R 484

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
              D+V+  A++SGY Q     + +ELF  +  +G  S+  T A+VL     L A+  GK
Sbjct: 485 NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGK 544

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           QVH++ ++      + + + ++DMY KCG ++ ++  FD++     ++W  ++ G  ++G
Sbjct: 545 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENG 604

Query: 341 MGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                + +F+ MR    V PD  ++  LA  S C     + R +      ++C    +P 
Sbjct: 605 EEERALHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTS--DPF 661

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
           +     +VDM  + G + +A    K +      A    L+G
Sbjct: 662 VG--TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVG 700



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 171/353 (48%), Gaps = 28/353 (7%)

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           ++S   ++S Y         L  F+ M+ SD E ++ TF  VL +        LG+Q+H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + +K   +  + V +SL++MY K  +I  AR VF  + ERD++S  ++I+G AQ  L+ E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           A+ LF +L   G+  ++ T  SVL A S L   L   KQ+H H ++    +   +  +LI
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 303 DMYS-----KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           D YS     K   + + R  FD      +++WNAM+ GY++   G + +ELF LM ++ +
Sbjct: 467 DAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMSGYTQSHDGHKTLELFALMHKQGE 520

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            + D  T   VL  C      ++G  V    +  K G++ ++     ++DM  + G +  
Sbjct: 521 -RSDDFTLATVLKTCGFLFAINQGKQVHAYAI--KSGYDLDLWVSSGILDMYVKCGDMSA 577

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE-------FVGQRLMEIEPE 463
           A     ++P  P      +L+  C     ++ GE       F   RLM + P+
Sbjct: 578 AQFAFDSIPV-PDDVAWTTLISGC-----IENGEEERALHVFSQMRLMGVLPD 624



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 143/262 (54%), Gaps = 3/262 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L  C     +  G++VHA+ IK+ Y   +++ + ++  Y KC  +S A+  FD +   
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP 588

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+WT +IS   +      AL++F +M      P+EFT AT+  + +     E G+QIH
Sbjct: 589 DDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +  +K N  S  +VG+SL+DMYAK G I +A  +F+ +   ++ +  A++ G AQ G  +
Sbjct: 649 ANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           EA++LF++++  G+  + VT+  VL+A   SGL +  + K + S    + I   +   + 
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAY-KYIRSMHRDYGIKPEIEHYSC 767

Query: 301 LIDMYSKCGSLTYSRRVFDNMS 322
           L D   + G +  +  + D+MS
Sbjct: 768 LADALGRAGLVKEAENLIDSMS 789



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 181/402 (45%), Gaps = 47/402 (11%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            L   ++   L  G+  HA ++     P  +L   LI  Y+KC  L+ AR++FD+M ER+
Sbjct: 52  FLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERD 111

Query: 124 VVSWTAMISAYSQKAHSF-----EALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFEL 177
           +VSW ++++AY+Q +        EA  LF R+LR D    +  T + +L  C  +     
Sbjct: 112 LVSWNSILAAYAQSSEGVVENVKEAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVCA 170

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            +  H    K   +   +V  +L+++Y K G++ E R +FE +P RDVV    ++  Y +
Sbjct: 171 SESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLE 230

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           +G  EEAI+L       G+  N +T   +L+ +SG  +     +   +       S ++ 
Sbjct: 231 MGFKEEAIDLSSAFHTSGLHPNEITL-RLLSRISGDDSEAGQVKSFENGNDASAVSEIIS 289

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSER--------------TVISWNAMLVGYSKHGMG- 342
           +N ++  Y   G  +   + F +M E               T +  +++ +G   H M  
Sbjct: 290 RNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMAL 349

Query: 343 -----------REVVELFNLMRE--------ENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
                        ++ ++  +R+         N  + D +++ +V++G +   +E   + 
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +F +++ C  G +P  +HY  +  +L  A  + E L   K +
Sbjct: 410 LFMQLLRC--GLKP--DHY-TMTSVLKAASSLPEGLSLSKQI 446



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 8/154 (5%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK  H+ +L  E      L N+LI MYSKCGSLTY+RRVFD M ER ++SWN++L  Y++
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 339 HGMG-----REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
              G     +E   LF ++R++  V    +T   +L  C H G      + FH    CK 
Sbjct: 125 SSEGVVENVKEAFLLFRILRQD-VVYTSRMTLSPMLKLCLHSGYVCASES-FHGYA-CKI 181

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           G + +    G +V++  + G+V E     + MP+
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY 215


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/593 (41%), Positives = 368/593 (62%), Gaps = 11/593 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +GL+M       ++ AC +   L G  ++H+  + + +   V +   L+ +Y K   
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 109 LSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           L DA+++F  M   R+ VSW +MI AY Q     +AL LF  M+R     + FT A+VLT
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVV 226
           +         G Q H  +IK+ F  + +VGS L+D+Y+K  G + + R VFE + E D+V
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 227 SCTAIISGYAQ-LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
               ++SGY+Q     E+A+E FR++Q  G   N  ++  V++A S L++   GKQ+HS 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 286 VLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            L+ +IPS  + + N+LI MYSKCG+L  +RR+FD M+E   +S N+M+ GY++HG+  E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + LF  M E  ++ P S+T+++VLS C+H G  + G   F+ + + K   EPE EHY C
Sbjct: 429 SLHLFQWMLER-QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKE-KFNIEPEAEHYSC 486

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           ++D+LGRAG++ EA   I  MPF P +    SLLGACR H N+++      +++++EP N
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           A  YV+LSN+YASAGRWE+V  VR+ M+++ V K PG SWIE+ + +H F A D SHPM 
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE---QKEKVLLGHSEKLALTFGLIGTPE 581
           +E+   ++++S K K AGYVPD+   L   D     +KE  L  HSEKLA+ FGLI T +
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKD 666

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G P+ V+KNLRIC DCHN  KF+S + GR++++RD +RFH   EG CSCGDYW
Sbjct: 667 GEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 226/475 (47%), Gaps = 46/475 (9%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
            + +  LL  C+ +R L  G+ +H+  IK+   P  Y     I+ Y+KC  L+ ARK F 
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 118 EMRERNVVSWTAMISAYSQK-----AHSF--------------------------EALNL 146
           ++ + NV S+ A+I+AY+++     AH                             AL L
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F  M     + + FT + V+T+C    G  L  Q+HS+ + S F+S++ V ++LL  Y K
Sbjct: 128 FSGMREMGLDMDXFTLSAVITACCDDVG--LIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 207 AGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
            G + +A+ VF  +   RD VS  ++I  Y Q     +A+ LF+++   G+  +  T AS
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-GSLTYSRRVFDNMSER 324
           VLTA + L  L  G Q H  +++        + + LID+YSKC G ++  R+VF+ ++E 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 325 TVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
            ++ WN M+ GYS++     + +E F  M+     +P+  +++ V+S CS+     +G  
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           + H +    D     I     ++ M  + G + +A      M  E     L S++     
Sbjct: 365 I-HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQ 422

Query: 444 H----YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           H     ++ + +++ +R  +I P +     +LS   A  GR E+      +MKEK
Sbjct: 423 HGIEMESLHLFQWMLER--QIAPTSITFISVLSAC-AHTGRVEEGWNYFNMMKEK 474



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 8/328 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC- 106
           EM   GL +      ++L A      L GG + H  +IKT +    ++ + LI  Y+KC 
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE-ALNLFIRMLRSDTEPNEFTFATV 165
             +SD RK+F+E+ E ++V W  M+S YSQ     E AL  F +M      PN+ +F  V
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +++C+       GKQIHSL +KS+  S+ I V ++L+ MY+K G + +AR +F+ + E +
Sbjct: 350 ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN 409

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            VS  ++I+GYAQ G++ E++ LF+ +    +    +T+ SVL+A +    +  G    +
Sbjct: 410 TVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN 469

Query: 285 HVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMG 342
            +  +F I       + +ID+  + G L+ +  +   M      I W ++L     HG  
Sbjct: 470 MMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNI 529

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLS 370
              V+  N + +   ++P +     VLS
Sbjct: 530 ELAVKAANQVLQ---LEPSNAAPYVVLS 554


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/510 (43%), Positives = 336/510 (65%), Gaps = 2/510 (0%)

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW ++I    ++    +AL+ F +M   D + +E+T  +VL S A     +    +H L
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           IIK+ FE++  V ++L+DMYAK G++  A  VF  + ++DVVS T++++GY+  G  EEA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           I+LF K+++ G+  + +  ASVL+A + L  +  G+Q+H+ +++  + S + + NSL+ M
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCGS+  + R FDNM  R VISW A++VGY+++G G+  ++ ++ M      KPD +T
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATG-TKPDYIT 245

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ +L  CSH G+   G A F E +D   G +P  EHY C++D+LGR+G++ EA   +  
Sbjct: 246 FIGLLFACSHNGLLGSGRAYF-EAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQ 304

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M   P A +  +LL ACRVH  +++GE   + L E+EP N+  YV+LSN+Y++AG+WED 
Sbjct: 305 MVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDA 364

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            R+R LM+ + + K+PG SWIE +  + TF + DR+HP+R E+ +K+ ++ +  KEAGYV
Sbjct: 365 ARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYV 424

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PDMS  L+D D+E KE  L  HSEKLA+ FGL+  P+GAPIR+ KNLR+C DCH   K+ 
Sbjct: 425 PDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYT 484

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKVY R + LRD N FHH  EG CSCGDYW
Sbjct: 485 SKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 154/289 (53%), Gaps = 4/289 (1%)

Query: 55  EMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           +M+ +EY   ++LN+  + + ++    VH  +IKT +     +   LI  Y K   L  A
Sbjct: 36  DMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCA 95

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
             +F +M +++VVSWT++++ YS      EA+ LF +M  S   P++   A+VL++CA  
Sbjct: 96  IMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAEL 155

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + G+QIH+ ++KS  ES + V +SL+ MYAK G I +A   F+ +P RDV+S TA+I
Sbjct: 156 TVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALI 215

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEI 291
            GYAQ G  + +++ + ++   G   +Y+T+  +L A S    LG G+     + + + I
Sbjct: 216 VGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGI 275

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKH 339
                    +ID+  + G L  ++ + + M      + W A+L     H
Sbjct: 276 KPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D VS  ++I G  + G +E+A+  F+K++   M  +  T  SVL + + +  + +   VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
             +++    +Y ++ N+LIDMY+K G L  +  VF  M ++ V+SW +++ GYS +G   
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E ++LF  MR    V PD +   +VLS C+   + D G  +   +V  K G E  +    
Sbjct: 125 EAIKLFCKMRISG-VYPDQIAVASVLSACAELTVMDFGQQIHATLV--KSGLESSLSVDN 181

Query: 404 CVVDMLGRAGRVGEALEFIKNMP----FEPTAAILG 435
            +V M  + G + +A     NMP       TA I+G
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVG 217


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/617 (39%), Positives = 373/617 (60%), Gaps = 39/617 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M +LGL      +  LL AC   +  R GQ++H H++K      +Y+ T LI  Y K   
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153

Query: 109 LSDARK-------------------------------MFDEMRERNVVSWTAMISAYSQK 137
             DARK                               MFDE+  ++VVSW A+IS Y++ 
Sbjct: 154 XEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
            +  EAL LF  M++++ +P+E T  TVL++CA +   ELG+Q+HS I    F S++ + 
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D+Y K G +  A G+FE L  +DV+S   +I GY  + L +EA+ LF+++   G  
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLR----FEIPSYVVLQNSLIDMYSKCGSLTY 313
            N VT  S+L A + L A+  G+ +H ++ +       PS   L+ SLIDMY+KCG +  
Sbjct: 334 PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPS--SLRTSLIDMYAKCGDIEA 391

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +++VFD+M  R++ SWNAM+ G++ HG      ++F+ MR++  ++PD +T++ +LS CS
Sbjct: 392 AQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG-IEPDDITFVGLLSACS 450

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H GM D G  +F  + +      P++EHYGC++D+LG +G   EA E I +M  +P   I
Sbjct: 451 HSGMLDLGRHIFRSMTE-DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVI 509

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             SLL AC++H NV++GE   Q L++IEP+N+G+YV+LSN+YA+AGRW +V + R L+ +
Sbjct: 510 WCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLND 569

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S VL +
Sbjct: 570 KGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 629

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           ++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y R++ 
Sbjct: 630 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 689

Query: 614 LRDKNRFHHIVEGTCSC 630
            RD+ RFHH  +G CSC
Sbjct: 690 ARDRTRFHHFXDGVCSC 706



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 201/398 (50%), Gaps = 40/398 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEM 119
           +LL+ C   +TL+  + +HA MIKT      Y  ++LI   V     + L+ A  +FD +
Sbjct: 7   SLLHNC---KTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +E N++ W  M   ++  +    AL L++ M+     PN +TF  +L +CA +  F  G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA--------- 230
           QIH  ++K   +  +YV +SL+ MY K GR  +AR VF+    RDVVS TA         
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 231 ----------------------IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                                 +ISGYA+ G  +EA+ELF+++    +  +  T  +VL+
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +  A++  G+QVHS +      S + + N+LID+Y KCG +  +  +F+ +S + VIS
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVIS 303

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN ++ GY+   + +E + LF  M    +  P+ VT L++L  C+H G  D G  + H  
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNEVTMLSILPACAHLGAIDIGRWI-HVY 361

Query: 389 VDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +D +  G          ++DM  + G +  A +   +M
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/593 (41%), Positives = 368/593 (62%), Gaps = 11/593 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +GL+M       ++ AC +   L G  ++H+  + + +   V +   L+ +Y K   
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 109 LSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           L DA+++F  M   R+ VSW +MI AY Q     +AL LF  M+R     + FT A+VLT
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVV 226
           +         G Q H  +IK+ F  + +VGS L+D+Y+K  G + + R VFE + E D+V
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 227 SCTAIISGYAQ-LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
               ++SGY+Q     E+A+E FR++Q  G   N  ++  V++A S L++   GKQ+HS 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 286 VLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            L+ +IPS  + + N+LI MYSKCG+L  +RR+FD M+E   +S N+M+ GY++HG+  E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + LF  M E  ++ P S+T+++VLS C+H G  + G   F+ + + K   EPE EHY C
Sbjct: 429 SLHLFQWMLER-QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKE-KFNIEPEAEHYSC 486

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           ++D+LGRAG++ EA   I  MPF P +    SLLGACR H N+++      +++++EP N
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           A  YV+LSN+YASAGRWE+V  VR+ M+++ V K PG SWIE+ + +H F A D SHPM 
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE---QKEKVLLGHSEKLALTFGLIGTPE 581
           +E+   ++++S K K AGYVPD+   L   D     +KE  L  HSEKLA+ FGLI T +
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKD 666

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G P+ V+KNLRIC DCHN  KF+S + GR++++RD +RFH   EG CSCGDYW
Sbjct: 667 GEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 225/475 (47%), Gaps = 46/475 (9%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK--- 114
            + +  LL  C+ +R L  G+ +H+  IK+   P  Y     I+ Y+KC  L+ ARK   
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 115 ----------------------------MFDEMRERNVVSWTAMISAYSQKAHSFEALNL 146
                                       +FD++ E ++VS+  +ISAY+    +  AL L
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F  M     + + FT + V+T+C    G  L  Q+HS+ + S F+S++ V ++LL  Y K
Sbjct: 128 FSGMREMGLDMDGFTLSAVITACCDDVG--LIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 207 AGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
            G + +A+ VF  +   RD VS  ++I  Y Q     +A+ LF+++   G+  +  T AS
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLAS 245

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-GSLTYSRRVFDNMSER 324
           VLTA + L  L  G Q H  +++        + + LID+YSKC G ++  R+VF+ ++E 
Sbjct: 246 VLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 325 TVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
            ++ WN M+ GYS++     + +E F  M+     +P+  +++ V+S CS+     +G  
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG-YRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           + H +    D     I     ++ M  + G + +A      M  E     L S++     
Sbjct: 365 I-HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQ 422

Query: 444 H----YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           H     ++ + +++ +R  +I P +     +LS   A  GR E+      +MKEK
Sbjct: 423 HGIEMESLHLFQWMLER--QIAPTSITFISVLSAC-AHTGRVEEGWNYFNMMKEK 474



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 8/328 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC- 106
           EM   GL +      ++L A      L GG + H  +IKT +    ++ + LI  Y+KC 
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE-ALNLFIRMLRSDTEPNEFTFATV 165
             +SD RK+F+E+ E ++V W  M+S YSQ     E AL  F +M      PN+ +F  V
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +++C+       GKQIHSL +KS+  S+ I V ++L+ MY+K G + +AR +F+ + E +
Sbjct: 350 ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN 409

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            VS  ++I+GYAQ G++ E++ LF+ +    +    +T+ SVL+A +    +  G    +
Sbjct: 410 TVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN 469

Query: 285 HVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMG 342
            +  +F I       + +ID+  + G L+ +  +   M      I W ++L     HG  
Sbjct: 470 MMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNI 529

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLS 370
              V+  N + +   ++P +     VLS
Sbjct: 530 ELAVKAANQVLQ---LEPSNAAPYVVLS 554


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 362/576 (62%), Gaps = 7/576 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + L AC     +  G+ + A  + + Y     ++  LI  Y+KC  L  ARK+FD ++
Sbjct: 166 FSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLK 225

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+V++W  MIS Y+++  + +AL LF RM  +D +PN  TF  +LT+C      E G+ 
Sbjct: 226 NRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA 285

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           IH  + +  +ES + +G+ LL+MY K +  + EAR VFE L  RDV++   +I  Y Q G
Sbjct: 286 IHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYG 345

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             ++A+++F+++Q+E +  N +T ++VL+A + L A   GK VH+ +      + VVL+N
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL++MY++CGSL  +  VF  + +++++SW+ ++  Y++HG  R  +E F  + +E  + 
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEG-LA 464

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D VT ++ LS CSHGGM   G+  F  +V    G  P+  H+ C+VD+L RAGR+  A 
Sbjct: 465 ADDVTMVSTLSACSHGGMLKEGVQSFLSMVG-DHGLAPDYRHFLCMVDLLSRAGRLEAAE 523

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-ILSNLYASA 478
             I +MPF P A    SLL  C++H +      V  +L E+E E+  + V +LSN+YA A
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GRW+DV + R     +A  K+PG S+IE++  +H F A D+SHP  E ++A++K+LS + 
Sbjct: 584 GRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQM 640

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K+AGYVPDM  VL++V EE+KE++L  HSEKLA+ +GLI TP G P+ ++KNLR CVDCH
Sbjct: 641 KDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCH 700

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             AKF+S++ GRK+ +RD  RFHH   G+CSC DYW
Sbjct: 701 AAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 202/360 (56%), Gaps = 8/360 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +  C + + L+ GQ +HA +++T      + L T LI  Y +C  L  ARK FDEM ++ 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE---PNEFTFATVLTSCAGAFGFELGKQ 180
           +V+W A+I+ YS+      AL ++  M+    E   P+  TF++ L +C+       G++
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I +  + S + S   V ++L++MY+K G +  AR VF+ L  RDV++   +ISGYA+ G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A+ELF+++       N VT+  +LTA + L  L  G+ +H  V      S +V+ N 
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 301 LIDMYSKC-GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           L++MY+KC  SL  +R+VF+ +  R VI+WN ++V Y ++G  ++ +++F  M+ EN V 
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN-VA 363

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +T   VLS C+  G + +G AV   I   +   +  +E+   +++M  R G + + +
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDDTV 421



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 226/451 (50%), Gaps = 58/451 (12%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC  ++DA  +F  +   N VSWT +++A+++  H  EAL  + RM+     P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           F   +  C+ +   + G+ +H++I+++   E  I +G++L+ MYA+   +  AR  F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKL---QVEGMISNYVTYASVLTALSGLAALG 277
            ++ +V+  A+I+GY++ G    A+++++ +     EGM  + +T++S L A S +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+++ +  +     S  ++QN+LI+MYSKCGSL  +R+VFD +  R VI+WN M+ GY+
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           K G   + +ELF  M   N  KP+ VT++ +L+ C++    ++G A+  ++ +   G+E 
Sbjct: 241 KQGAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE--HGYES 297

Query: 398 EIEHYGCVVDMLGRA--------------------------------GRVGEALEFIKNM 425
           ++     +++M  +                                 G+  +AL+  K M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 426 PFE---PTAAILGSLLGACRVHYNVDIGEFV------GQRLMEIEPENAGNYVILSNLYA 476
             E   P    L ++L AC V      G+ V      G+   ++  EN+     L N+Y 
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENS-----LMNMYN 412

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
             G  +D   V   +++K++      SW  L
Sbjct: 413 RCGSLDDTVGVFAAIRDKSLV-----SWSTL 438


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 381/620 (61%), Gaps = 3/620 (0%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLE-MRFEEYDTLLNACVNQRTL 74
             +Q++   SF    ++L  + +      +  E+  +G+      E   LL +    R  
Sbjct: 4   LKKQKILCNSFSLQVRHLLAISNAMAERPSSKELVWVGIRATHVSELQHLLQSSARNRAA 63

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
             G   HA +I+   R        L+  Y+KC  +  ARK+FDEM  R++VSW  M+ ++
Sbjct: 64  IEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSH 123

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +Q     +AL LF++M +  T  +EFT ++V+ +CA        KQ+H   +K+  +S++
Sbjct: 124 TQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNV 183

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG++LLD+YAK G + +A  VFEC+PER  V+ +++++GY Q  L EEA+ LF + Q  
Sbjct: 184 FVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAM 243

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  N  T +S L+A +  AAL  GKQV +   +  I S + + +SLIDMY+KCG +  +
Sbjct: 244 GLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEA 303

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
             VF ++ E+ V+ WNA+L G+S+H    E +  F  M++   + P+ +TY++VLS CSH
Sbjct: 304 YTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG-ICPNDITYISVLSACSH 362

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ ++G   F  ++   +   P + HY C+VD+LGRAG + EA +FI  MPF+ TA++ 
Sbjct: 363 LGLVEKGRKYFDLMIRVHN-VSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMW 421

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLL +CR++ N+++ E   + L EIEP NAGN+V+LSN+YA+  RWE+V R R L+KE 
Sbjct: 422 GSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKES 481

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
              K+ G+SWIE+   +H+F   +R+HP   E+  K++ L  + K+ GY       L+DV
Sbjct: 482 KAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDV 541

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +E +K+++L  HSEKLALTFG++  P GAPIR++KNLRIC DCH+F K  S +  R++ +
Sbjct: 542 EESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIV 601

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD NRFHH   G CSCG++W
Sbjct: 602 RDTNRFHHFKNGYCSCGEFW 621


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 364/594 (61%), Gaps = 3/594 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q  + LI++   G E     + ++L  C ++  L  G+ +H  +IK+   P  +L   L+
Sbjct: 174 QGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLV 233

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC   + A K+F E+ ER+VVSWTA+I+ +  + +    L +F +ML     PN +
Sbjct: 234 NVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMY 292

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TF ++L SC+     +LGKQ+H+ I+K++ + + +VG++L+DMYAK   + +A  +F  L
Sbjct: 293 TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 352

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            +RD+ + T I++GYAQ G  E+A++ F ++Q EG+  N  T AS L+  S +A L  G+
Sbjct: 353 IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 412

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           Q+HS  ++      + + ++L+DMY+KCG +  +  VFD +  R  +SWN ++ GYS+HG
Sbjct: 413 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 472

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
            G + ++ F  M +E  V PD VT++ VLS CSH G+ + G   F+ +     G  P IE
Sbjct: 473 QGGKALKAFEAMLDEGTV-PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIY-GITPTIE 530

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C+VD+LGRAG+  E   FI+ M       I  ++LGAC++H N++ GE    +L E+
Sbjct: 531 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 590

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           EPE   NY++LSN++A+ G W+DVT VR LM  + V K+PG SW+E++  +H F + D S
Sbjct: 591 EPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGS 650

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           HP   E+  K++ L  K    GY P+   VL++V + +K+++L  HSE+LAL F L+ T 
Sbjct: 651 HPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTS 710

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
               IR+ KNLRIC DCH+F K +S++  +++ +RD N FHH   G+CSC ++W
Sbjct: 711 TRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 182/358 (50%), Gaps = 4/358 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +L++A  +      G+ +HA + K  +   + +    +  Y K + + +  + F  M 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N+ S   ++S +       +   + I++L    EPN +TF ++L +CA       GK 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  +IKS      ++ +SL+++YAK G  + A  VF  +PERDVVS TA+I+G+   G 
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY 272

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
               + +F ++  EG   N  T+ S+L + S L+ +  GKQVH+ +++  +     +  +
Sbjct: 273 G-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K   L  +  +F+ + +R + +W  ++ GY++ G G + V+ F  M+ E  VKP
Sbjct: 332 LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG-VKP 390

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +  T  + LSGCS     D G  +    +  K G   ++     +VDM  + G V +A
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAI--KAGQSGDMFVASALVDMYAKCGCVEDA 446



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 158/312 (50%), Gaps = 2/312 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++   +IK    P  +L + L+  Y KCE L  AR++ +EM  ++V  W   +S+ +  
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EA+ LF  M  +    N+F FA+++++ A       G+ IH+ + K  FES I + 
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++ + MY K   +      F+ +   ++ S   ++SG+      ++   +  +L VEG  
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N  T+ S+L   +    L  GK +H  V++  I     L NSL+++Y+KCGS  Y+ +V
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  + ER V+SW A++ G+   G G   + +FN M  E    P+  T++++L  CS    
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGYGSG-LRIFNQMLAEG-FNPNMYTFISILRSCSSLSD 306

Query: 378 EDRGLAVFHEIV 389
            D G  V  +IV
Sbjct: 307 VDLGKQVHAQIV 318



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L +SL+++Y KC SL  +R+V + M  + V  WN  L   +     +E V+LF LMR   
Sbjct: 26  LWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRH-T 84

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           +++ +   + +++S  +  G    G ++ H  V CK GFE +I      V M  +   V 
Sbjct: 85  RIRLNQFIFASLISAAASLGDNHYGESI-HACV-CKYGFESDILISNAFVTMYMKTQSVE 142

Query: 417 EALEFIKNMPFEPTAAILGSLLGAC 441
              +F K M  E  A+    L G C
Sbjct: 143 NGWQFFKAMMIENLASRNNLLSGFC 167


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/621 (40%), Positives = 371/621 (59%), Gaps = 29/621 (4%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRL 99
           +  + L +M  LG+      + + L AC     L  G+ VHA ++K        ++ + L
Sbjct: 243 EAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASAL 302

Query: 100 IVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKA-HSFEALNLFIRM-LRSDT 155
           +  Y   E +S AR++FD + E  R +  W AMI  Y+Q      EA+ LF RM   +  
Sbjct: 303 VDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGC 362

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+E T A VL +CA +  F   + +H  ++K +  S+ +V ++L+DMYA+ GR+ EA  
Sbjct: 363 APSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHT 422

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ------------------VEGM- 256
           +F  +  RD+VS   +I+G    GL  EA +L R++Q                  V+G  
Sbjct: 423 IFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQR 482

Query: 257 -ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            + N +T  ++L   + LAA   GK++H + +R  + S + + ++L+DMY+KCG L  +R
Sbjct: 483 CMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALAR 542

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VFD +  R VI+WN +++ Y  HG+G E + LF+ M    +  P+ VT++A L+ CSH 
Sbjct: 543 AVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHS 602

Query: 376 GMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAI 433
           G+ DRGL +F  +   +D GFEP    + CVVD+LGRAGR+ EA   I +M P E   + 
Sbjct: 603 GLVDRGLELFQGMK--RDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSA 660

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             ++LGACR+H NV +G    +RL E+EP+ A +YV+L N+Y++AG WE+ T VR +M++
Sbjct: 661 WSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQ 720

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           + V K+PG SWIELD  +H F A + +HP   ++ A +  L  + +  GYVPD SCVL+D
Sbjct: 721 RGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHD 780

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           VDE +K  +L  HSEKLA+ FGL+  P GA IRV KNLR+C DCH  AKF+S++ GR++ 
Sbjct: 781 VDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIV 840

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           LRD  RFHH  +GTCSCGDYW
Sbjct: 841 LRDVRRFHHFRDGTCSCGDYW 861



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 202/414 (48%), Gaps = 28/414 (6%)

Query: 27  PPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ----RTLRGGQRVHA 82
           PP   ++++L + G    AL  +++L            L   +      R  R  + +H 
Sbjct: 13  PPTSSSIRSLTAAGHHAAALRALSSLAASPSSALDHFALPPAIKSAAALRDSRSTRAIHG 72

Query: 83  HMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISA---YS 135
             ++    +RP   +   L+  Y +C  L  A  +F       R+ VS+ ++ISA   + 
Sbjct: 73  ASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFR 132

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKSNF--- 190
           +  H+ +AL    R + +D E + FT  +VL +C+     G  LG++ H+  +K  F   
Sbjct: 133 RWGHALDAL----RDMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDK 188

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVF--ECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
               +  ++LL MYA+ G + +A+ +F        D+V+   +IS   Q G  EEA+++ 
Sbjct: 189 GRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVL 248

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSK 307
             +   G+  + VT+AS L A S L  LG G++VH+ VL+  ++ +   + ++L+DMY+ 
Sbjct: 249 YDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYAS 308

Query: 308 CGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPDSVT 364
              ++++RRVFD + E  R +  WNAM+ GY++H GM  E +ELF+ M  E    P   T
Sbjct: 309 NEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETT 368

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
              VL  C+   +     AV   +V         +++   ++DM  R GR+ EA
Sbjct: 369 MAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQN--ALMDMYARLGRMDEA 420


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 348/574 (60%), Gaps = 2/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LLN       L    R+H  + +        +R  L+  Y +CE   DAR +FD++ 
Sbjct: 365 FISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLE 424

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N++SW +MI  Y Q     +AL LF  M +   +P+   F T+L +C         K 
Sbjct: 425 LPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKL 484

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  + +S       V +SL++MYAKAG +  A  + + + E+ + +   +I+GYA  G 
Sbjct: 485 VHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGR 544

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+E ++KLQ+E +  + VT+ SVL A +   +L  GK +HS+ +   + S V+++N+
Sbjct: 545 SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA 604

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L +MYSKCGS+  +RR+FD+M  R+ +SWN ML  Y++HG   EV++L   M +E  VK 
Sbjct: 605 LTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG-VKL 663

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+++VLS CSH G+   G   FH +   + G E + EHYGC+VD+LGRAG++ EA +
Sbjct: 664 NGITFVSVLSSCSHAGLIAEGCQYFHSLGHDR-GIEVKTEHYGCLVDLLGRAGKLQEAEK 722

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           +I  MP EP      SLLGACRV  ++D G+    +L+E++P N+   V+LSN+Y+  G 
Sbjct: 723 YISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGD 782

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W++  ++R  M  + V K PG S I++   +H F   D SHP   E+  KV++L    +E
Sbjct: 783 WKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMRE 842

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYVPD   VL+DVDEEQKE +L  HSEKLA+ FGLI TPE + + + KNLR+C DCH  
Sbjct: 843 AGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTA 902

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+ GR++ +RD +RFHH  +G+CSC DYW
Sbjct: 903 TKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/542 (26%), Positives = 269/542 (49%), Gaps = 51/542 (9%)

Query: 42  LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101
            T+ L+E    G++     +  +LN+ V+   LR G+ +H+ + ++ +   V++ T L+ 
Sbjct: 148 FTRMLLE----GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVN 203

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC  L+DARK+FD M  R+V +W +MISAYS    S EA  +F RM +     +  T
Sbjct: 204 TYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVT 263

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           F ++L +C      + GK +   I +++FE  ++VG++L+ MYA+     +A  VF  + 
Sbjct: 264 FLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK 323

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           + ++++ +AII+ +A  G   EA+  FR +Q EG++ N VT+ S+L   +  + L    +
Sbjct: 324 QTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR 383

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H  +    +     ++N+L+++Y +C S   +R VFD +    +ISWN+M+  Y +   
Sbjct: 384 IHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCER 443

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRGLA----VFH 386
             + ++LF  M+++  ++PD V ++ +L  C+           H  +E+ GL     V  
Sbjct: 444 HDDALQLFRTMQQQG-IQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQT 502

Query: 387 EIVD--------------CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE--PT 430
            +V+               ++  E +I  +  +++     GR  EALE  + +  E  P 
Sbjct: 503 SLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPV 562

Query: 431 AAI-LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI---LSNLYASAGRWEDVTR 486
             +   S+L AC    ++  G+ +    +E   ++  + ++   L+N+Y+  G  E+  R
Sbjct: 563 DKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDS--DVIVKNALTNMYSKCGSMENARR 620

Query: 487 VRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
           + + M        P RS +  + +L  +     S  +  +L  K++Q  VK     +V  
Sbjct: 621 IFDSM--------PIRSAVSWNGMLQAYAQHGESEEVL-KLIRKMEQEGVKLNGITFVSV 671

Query: 547 MS 548
           +S
Sbjct: 672 LS 673



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 234/475 (49%), Gaps = 49/475 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +LN+C + R LR G  VHA  ++  +     + T L+  Y KC  L DA+ +F+EM E+N
Sbjct: 64  VLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKN 123

Query: 124 VVSWTAMISAYSQKAHSFE-ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           VV+W AM+  YS +   ++ A+ LF RML    + N  TF  VL S         GK IH
Sbjct: 124 VVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIH 183

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S + +S     ++V ++L++ Y K G + +AR VF+ +P R V +  ++IS Y+      
Sbjct: 184 SCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSG 243

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV--LRFEIPSYVVLQNS 300
           EA  +F+++Q EG   + VT+ S+L A      L HGK V   +    FE+  +V    +
Sbjct: 244 EAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFV--GTA 301

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY++C S   + +VF  M +  +I+W+A++  ++ HG   E +  F +M++E  + P
Sbjct: 302 LITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEG-ILP 360

Query: 361 DSVTYLAVLSG-CSHGGMEDRGLAVFHEIV--------------------------DCKD 393
           + VT++++L+G  +  G+E+  L+  H ++                          D + 
Sbjct: 361 NRVTFISLLNGFTTPSGLEE--LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDART 418

Query: 394 GFE----PEIEHYGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYN 446
            F+    P +  +  ++ +  +  R  +AL+  + M     +P      ++LGAC +  +
Sbjct: 419 VFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSH 478

Query: 447 VDIGEFVGQRLMEIEPENAGNYVI----LSNLYASAGRWEDVTRVRELMKEKAVT 497
               + V Q    +E    G   +    L N+YA AG  +    + + M E+ +T
Sbjct: 479 GRTRKLVHQC---VEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQIT 530



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/272 (37%), Positives = 157/272 (57%), Gaps = 2/272 (0%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y++C  L DA   F ++R RNVVSW  MISAYS      EAL LF  ML     PN  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              VL SC        G  +H+L ++  F  +  V ++LL+MY K G + +A+ VFE + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 222 ERDVVSCTAIISGYAQLGLDEE-AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           E++VV+  A++  Y+  G   + A+ELF ++ +EG+ +N +T+ +VL ++    AL  GK
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
            +HS V   E    V +  +L++ Y+KCGSLT +R+VFD M  R+V +WN+M+  YS   
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
              E   +F  M++E + + D VT+L++L  C
Sbjct: 241 RSGEAFFIFQRMQQEGE-RCDRVTFLSILDAC 271



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 6/275 (2%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY++ G + +A   F  +  R+VVS   +IS Y+     +EA+ LF  + +EG+  N +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             +VL +      L  G  VH+  L        ++  +L++MY KCG+L  ++ VF+ M+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 323 ERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           E+ V++WNAML  YS  G   +  VELF  M  E  VK + +T+L VL+         +G
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG-VKANVITFLNVLNSVVDPDALRKG 179

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
             +   + + +   +  +     +V+   + G + +A +    MP   +     S++ A 
Sbjct: 180 KFIHSCVRESEHSLDVFVN--TALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISAY 236

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
            +        F+ QR M+ E E       LS L A
Sbjct: 237 SISERSGEAFFIFQR-MQQEGERCDRVTFLSILDA 270


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/618 (38%), Positives = 365/618 (59%), Gaps = 24/618 (3%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTR 98
           G+  + + +M   G+      + + L AC     L  G+ +HA+++K        ++ + 
Sbjct: 253 GEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASA 312

Query: 99  LIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDT 155
           L+  Y   E +  AR++FD +    R +  W AM+  Y+Q     EAL LF RM   +  
Sbjct: 313 LVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGV 372

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+E T A VL +CA +  F   + +H  ++K     + +V ++L+D+YA+ G +  AR 
Sbjct: 373 VPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARW 432

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG------------------MI 257
           +F  +  RDVVS   +I+G    G   +A +L R++Q +G                  ++
Sbjct: 433 IFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVV 492

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N VT  ++L   + LAA   GK++H + +R  + S + + ++L+DMY+KCG L  SR V
Sbjct: 493 PNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAV 552

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD + +R VI+WN +++ Y  HG+G E + LF+ M   N+ KP+ VT++A L+ CSH GM
Sbjct: 553 FDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGM 612

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGS 436
            DRG+ +FH +     G +P  + + C VD+LGRAGR+ EA   I +M P E   +   S
Sbjct: 613 VDRGMELFHSMKR-NHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSS 671

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            LGACR+H NV +GE   +RL ++EP+ A +YV+L N+Y++AG WE  + VR  M+++ V
Sbjct: 672 FLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
           +K+PG SWIELD ++H F A + +HP    + A +  L  + +  GY PD S VL+D++E
Sbjct: 732 SKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEE 791

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
            +K  +L  HSEKLA+ FGL+ TP GA IRV KNLR+C DCH  AKF+S++ GR++ LRD
Sbjct: 792 SEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRD 851

Query: 617 KNRFHHIVEGTCSCGDYW 634
             RFHH V+G CSCGDYW
Sbjct: 852 VRRFHHFVDGACSCGDYW 869



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 194/401 (48%), Gaps = 47/401 (11%)

Query: 63  TLLNACVN-QRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           ++L AC +    LR G+  HA  +K  +      +    L+  Y +   + DA+ +F  +
Sbjct: 167 SVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSV 226

Query: 120 RERN-----VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
              +     VV+W  M+S   Q     EA+ +   M+     P+  TFA+ L +C+    
Sbjct: 227 DTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEM 286

Query: 175 FELGKQIHSLIIK-SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAI 231
             LG+++H+ ++K S+  ++ +V S+L+DMYA   R+  AR VF+ +P   R +    A+
Sbjct: 287 LSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAM 346

Query: 232 ISGYAQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           + GYAQ G+DEEA+ELF +++ E G++ +  T A VL A +        + VH +VL+  
Sbjct: 347 VCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG 406

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +     +QN+L+D+Y++ G +  +R +F  +  R V+SWN ++ G    G    + + F 
Sbjct: 407 MADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQG---HIHDAFQ 463

Query: 351 LMRE--------------------ENKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVF 385
           L+RE                    E  V P++VT + +L GC+       G E  G A+ 
Sbjct: 464 LVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR 523

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           H +       + +I     +VDM  + G +  +      +P
Sbjct: 524 HAL-------DSDIAVGSALVDMYAKCGCLALSRAVFDRLP 557



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 156/307 (50%), Gaps = 22/307 (7%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +C  L+ A  +F+ M  R+ V++ ++I+A         AL+    ML      +
Sbjct: 102 LLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLS 161

Query: 159 EFTFATVLTSCAG-AFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIHEARG 215
            FT  +VL +C+  A    LG++ H+  +K+ F      +  ++LL MYA+ G + +A+ 
Sbjct: 162 SFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQM 221

Query: 216 VFECLPERD-----VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
           +F  +   D     VV+   ++S   Q G   EAIE+   +   G+  + +T+AS L A 
Sbjct: 222 LFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPAC 281

Query: 271 SGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERTVI 327
           S L  L  G+++H++VL+  ++ +   + ++L+DMY+    +  +RRVFD +    R + 
Sbjct: 282 SQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLG 341

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----------HGG 376
            WNAM+ GY++ GM  E +ELF  M  E  V P   T   VL  C+           HG 
Sbjct: 342 LWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGY 401

Query: 377 MEDRGLA 383
           +  RG+A
Sbjct: 402 VLKRGMA 408



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 10/239 (4%)

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V ++LL  YA+ G +  A  +F  +P RD V+  ++I+          A++  R + +EG
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG 157

Query: 256 MISNYVTYASVLTALSGLAA-LGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLT 312
              +  T  SVL A S LA  L  G++ H+  L+  F         N+L+ MY++ G + 
Sbjct: 158 HPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVD 217

Query: 313 YSRRVFDNMSERT-----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            ++ +F ++         V++WN M+    + G   E +E+   M     V+PD +T+ +
Sbjct: 218 DAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARG-VRPDGITFAS 276

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            L  CS   M   G  +   ++   D           +VDM     RVG A      +P
Sbjct: 277 ALPACSQLEMLSLGREMHAYVLKDSD-LAANSFVASALVDMYASHERVGVARRVFDMVP 334


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/590 (38%), Positives = 362/590 (61%), Gaps = 2/590 (0%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           + +EM   G       + ++L +C     LR G+ VH  +++      +Y    L+  Y+
Sbjct: 92  SFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYS 151

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
           K   +   RK+F+ M  ++VVS+  +I+ Y+Q     +AL +   M  SD +P+ FT ++
Sbjct: 152 KLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSS 211

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           VL   +       GK+IH  +I+   +S +Y+GSSL+DMYAK+ RI ++  VF  L  RD
Sbjct: 212 VLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRD 271

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            +S  ++++GY Q G   EA+ LFR++    +    V ++SV+ A + LA L  GKQ+H 
Sbjct: 272 SISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHG 331

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           +VLR      + + ++L+DMYSKCG++  +R++FD M+    +SW A+++G++ HG G E
Sbjct: 332 YVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHE 391

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            V LF  M+ +  VKP+ V ++AVL+ CSH G+ D     F+ +     G   E+EHY  
Sbjct: 392 AVSLFEEMKRQG-VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY-GLNQELEHYAA 449

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           V D+LGRAG++ EA +FI  M  EPT ++  +LL +C VH N+++ E V +++  I+ EN
Sbjct: 450 VADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSEN 509

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            G YV++ N+YAS GRW+++ ++R  +++K + K P  SWIE+    H F + DRSHP  
Sbjct: 510 MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 569

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           + ++  +K +  + ++ GYV D S VL+DVDEE K ++L GHSE+LA+ FG+I T  G  
Sbjct: 570 DRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 629

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IRV KN+RIC DCH   KF+SK+  R++ +RD +RFHH   G+CSCGDYW
Sbjct: 630 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 190/380 (50%), Gaps = 8/380 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TL+      ++    +++HA  I+T           +I  Y   + L +A  +F  +   
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESP 68

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            V++W ++I  ++ ++    AL  F+ M  S   P+   F +VL SC        G+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I++   +  +Y G++L++MY+K   I   R VFE +P +DVVS   +I+GYAQ G+ E
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYE 188

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+ + R++    +  +  T +SVL   S    +  GK++H +V+R  I S V + +SL+
Sbjct: 189 DALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLV 248

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+K   +  S RVF ++  R  ISWN+++ GY ++G   E + LF  M    KV+P +
Sbjct: 249 DMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSA-KVRPGA 307

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V + +V+  C+H      G  +   ++  + GF   I     +VDM  + G +  A +  
Sbjct: 308 VAFSSVIPACAHLATLHLGKQLHGYVL--RGGFGRNIFIASALVDMYSKCGNIQAARKIF 365

Query: 423 KNMPFEP----TAAILGSLL 438
             M        TA I+G  L
Sbjct: 366 DRMNLHDEVSWTAIIMGHAL 385


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 353/559 (63%), Gaps = 3/559 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           GQ++H+ +IKT +   V++   L+ FY+K + + DARK+FDEM E++ VS+  +IS Y+ 
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                 A +LF  +  +  +  +F FAT+L+  +    +E+G+QIH+  I +  +S I V
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 348

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G+SL+DMYAK G+  EA  +F  L  R  V  TA+IS Y Q G  EE ++LF K++   +
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           I++  T+AS+L A + +A+L  GKQ+HS +++    S V   ++L+D+Y+KCGS+  + +
Sbjct: 409 IADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 468

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            F  M +R ++SWNAM+  Y+++G     ++ F  M     ++PDSV++L VLS CSH G
Sbjct: 469 TFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG-LQPDSVSFLGVLSACSHSG 527

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + GL  F+ +       +P  EHY  VVDML R+GR  EA + +  MP +P   +  S
Sbjct: 528 LVEEGLWHFNSMTQIYK-LDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 586

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +L ACR+H N ++      +L  +E   +A  YV +SN+YA+AG+WE+V++V + M+++ 
Sbjct: 587 VLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRG 646

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K P  SW+E+    H F A+DR HP  EE+  K+  L+   +E GY PD SC L++ D
Sbjct: 647 VKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNED 706

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           E+ K + L  HSE+LA+ F LI TPEG+PI V+KNLR C+DCH   K +SK+ GR++++R
Sbjct: 707 EKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVR 766

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFHH  +G CSCGD+W
Sbjct: 767 DSTRFHHFRDGFCSCGDFW 785



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 38/381 (9%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G E  +  + TLL+ C          +V   +IK  Y   + +   L+  Y K
Sbjct: 132 FVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 191

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L  A ++F EM                                    E + FTFA V
Sbjct: 192 SNRLDLACQLFKEM-----------------------------------PEIDSFTFAAV 216

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +  G     LG+QIHS +IK+NF  +++V ++LLD Y+K   + +AR +F+ +PE+D 
Sbjct: 217 LCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDG 276

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS   IISGYA  G  + A +LFR+LQ          +A++L+  S       G+Q+H+ 
Sbjct: 277 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 336

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            +     S +++ NSL+DMY+KCG    +  +F N++ R+ + W AM+  Y + G   E 
Sbjct: 337 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++LFN MR+ + V  D  T+ ++L   +       G  +   I+  K GF   +     +
Sbjct: 397 LQLFNKMRQAS-VIADQATFASLLRASASIASLSLGKQLHSFII--KSGFMSNVFSGSAL 453

Query: 406 VDMLGRAGRVGEALEFIKNMP 426
           +D+  + G + +A++  + MP
Sbjct: 454 LDVYAKCGSIKDAVQTFQEMP 474



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 189/393 (48%), Gaps = 42/393 (10%)

Query: 55  EMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E++F  +D       T+L+   N      G+++HA  I T     + +   L+  Y KC 
Sbjct: 301 ELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCG 360

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              +A  +F  +  R+ V WTAMISAY QK    E L LF +M ++    ++ TFA++L 
Sbjct: 361 KFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLR 420

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A      LGKQ+HS IIKS F S+++ GS+LLD+YAK G I +A   F+ +P+R++VS
Sbjct: 421 ASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVS 480

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS-------GLAALGHGK 280
             A+IS YAQ G  E  ++ F+++ + G+  + V++  VL+A S       GL       
Sbjct: 481 WNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMT 540

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           Q++    R E   Y     S++DM  + G    + ++   M  +   I W+++L     H
Sbjct: 541 QIYKLDPRRE--HYA----SVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 594

Query: 340 G----MGREVVELFNLMREENKVKPDSVTYLAVLSGC------SHGGMEDRGLA------ 383
                  R   +LFN+    +     +++ +   +G        H  M DRG+       
Sbjct: 595 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 654

Query: 384 ---VFHE--IVDCKDGFEPEIEHYGCVVDMLGR 411
              + HE  +    D   P+IE     +DML +
Sbjct: 655 WVEIKHETHMFSANDRCHPQIEEIRKKIDMLTK 687



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 160/333 (48%), Gaps = 50/333 (15%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y K   L +ARK+FD M ER  V+WT +I  YSQ     EA  LF++M R  TEP+
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143

Query: 159 EFTFATVLTSCAGAFGFELGKQI---HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             TF T+L+ C    G E+G QI    + IIK  ++S + VG++L+D Y K+ R+  A  
Sbjct: 144 YVTFVTLLSGCN---GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQ 200

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +PE D                                     T+A+VL A  GL  
Sbjct: 201 LFKEMPEIDS-----------------------------------FTFAAVLCANIGLDD 225

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G+Q+HS V++      V + N+L+D YSK  S+  +R++FD M E+  +S+N ++ G
Sbjct: 226 IVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISG 285

Query: 336 YSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHE-IVDCK 392
           Y+  G  +     F+L RE      D     +  +LS  S+    + G  +  + IV   
Sbjct: 286 YAWDGKHKYA---FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 342

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           D    EI     +VDM  + G+  EA     N+
Sbjct: 343 DS---EILVGNSLVDMYAKCGKFEEAEMIFTNL 372



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 137/307 (44%), Gaps = 54/307 (17%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRS----DTEPNEFTFATVLTSCAGAFGFEL 177
           +N+ S T++ S  S K       N+  R++++    DT  + F     L +   +   +L
Sbjct: 10  QNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQL 69

Query: 178 GKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            +++ H   + +N          ++  Y K+G + EAR +F+ + ER  V+ T +I GY+
Sbjct: 70  FEKMPHKNTVSTNM---------MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 120

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           QL   +EA ELF ++Q  G   +YVT+ ++L+  +G        QV + +++    S ++
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 180

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE------------------------------RTV 326
           + N+L+D Y K   L  + ++F  M E                              +T 
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN 240

Query: 327 ISW-----NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             W     NA+L  YSKH    +  +LF+ M E+     D V+Y  ++SG +  G     
Sbjct: 241 FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQ-----DGVSYNVIISGYAWDGKHKYA 295

Query: 382 LAVFHEI 388
             +F E+
Sbjct: 296 FDLFREL 302



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            V  N +I  Y K G+L  +R++FD M ERT ++W  ++ GYS+    +E  ELF  M +
Sbjct: 78  TVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM-Q 136

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
               +PD VT++ +LSGC+   M ++   V  +I+  K G++  +     +VD   ++ R
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQII--KLGYDSRLIVGNTLVDSYCKSNR 194

Query: 415 VGEALEFIKNMP 426
           +  A +  K MP
Sbjct: 195 LDLACQLFKEMP 206


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/624 (38%), Positives = 375/624 (60%), Gaps = 35/624 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +  + GQ++H H++K  Y   +Y+ T LI  Y
Sbjct: 89  KLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMY 148

Query: 104 NKCECLSDA-------------------------------RKMFDEMRERNVVSWTAMIS 132
            K     DA                               +KMFDE+  ++VVSW A+IS
Sbjct: 149 VKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIIS 208

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y+   ++ EAL+LF  M++++ +P+E T  TV+++CA +   +LG+Q+HS I      S
Sbjct: 209 GYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGS 268

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G +  A G+F+ L  +DV+S   +I GY  L L +EA+ LF+++ 
Sbjct: 269 NLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEML 328

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG 
Sbjct: 329 RSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGD 388

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF++M  RT+ + NAM+ G++ HG      ++F+ MR+ N ++PD +T++ +LS
Sbjct: 389 IEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRK-NGIEPDDITFVGLLS 447

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D G  +F  +        P++EHYGC++D+LG  G   EA E I  M  EP 
Sbjct: 448 ACSHSGMLDLGRRIFRSMTQ-NYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPD 506

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
             I  SLL AC++H NV++GE   Q+L++IEPEN G+YV+LSN+YA+AGRW +V  +R L
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRAL 566

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           + +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S V
Sbjct: 567 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEV 626

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L +++EE K+  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y R
Sbjct: 627 LQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 686

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++  RD+ RFHH  +G CSC DYW
Sbjct: 687 EIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 211/438 (48%), Gaps = 41/438 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECLSDARKMFDEM 119
           +LL+ C   +TL+  + +HA MIKT      Y  +RL+ F       + L  A  +F+ +
Sbjct: 7   SLLHNC---KTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +E N++ W  M   ++  +    A+ L++ M+     PN +TF  +L SCA     + G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA--------- 230
           QIH  ++K  +E  +YV +SL+ MY K GR  +A  VF+    RDVVS TA         
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 231 ----------------------IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                                 IISGYA  G ++EA++LF+++    +  +  T  +V++
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +   ++  G+QVHS +    + S + + N+LID+YSKCG +  +  +F  +S + VIS
Sbjct: 244 ACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVIS 303

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN M+ GY+   + +E + LF  M    +  P+ VT L++L  C+  G  D G  + H  
Sbjct: 304 WNTMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDFGRWI-HVY 361

Query: 389 VDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYN 446
           +D +  G          ++DM  + G +  A +   +M     +A    + G A     N
Sbjct: 362 IDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRAN 421

Query: 447 VDIGEFVGQRLMEIEPEN 464
                F   R   IEP++
Sbjct: 422 AAFDIFSRMRKNGIEPDD 439


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/575 (41%), Positives = 364/575 (63%), Gaps = 2/575 (0%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           E   LL +    R    G   HA +I+   R        L+  Y+KC  +  ARK+FDEM
Sbjct: 22  ELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEM 81

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             R++VSW  M+ +++Q     +AL LF++M +  T  +EFT ++V+ +CA        K
Sbjct: 82  PVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECK 141

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H   +K+  +S+++VG++LLD+YAK G + +A  VFEC+PER  V+ +++++GY Q  
Sbjct: 142 QLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNE 201

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L EEA+ LF + Q  G+  N  T +S L+A +  AAL  GKQV +   +  I S + + +
Sbjct: 202 LYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVIS 261

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLIDMY+KCG +  +  VF ++ E+ V+ WNA+L G+S+H    E +  F  M++   + 
Sbjct: 262 SLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG-IC 320

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +TY++VLS CSH G+ ++G   F  ++   +   P + HY C+VD+LGRAG + EA 
Sbjct: 321 PNDITYISVLSACSHLGLVEKGRKYFDLMIRVHN-VSPNVLHYSCMVDILGRAGLLHEAK 379

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +FI  MPF+ TA++ GSLL +CR++ N+++ E   + L EIEP NAGN+V+LSN+YA+  
Sbjct: 380 DFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAAND 439

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWE+V R R L+KE    K+ G+SWIE+   +H+F   +R+HP   E+  K++ L  + K
Sbjct: 440 RWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMK 499

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GY       L+DV+E +K+++L  HSEKLALTFG++  P GAPIR++KNLRIC DCH+
Sbjct: 500 KIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHS 559

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F K  S +  R++ +RD NRFHH   G CSCG++W
Sbjct: 560 FMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/619 (41%), Positives = 372/619 (60%), Gaps = 15/619 (2%)

Query: 28  PNPQNLKTLCSNGQLTKAL--IEMAT---LGLEMRFEEYDTLLNACVNQRTLRGGQRVHA 82
           P    LK+LC  G L KAL  IE +    +  E   E     L+AC+++R+L  G+++H 
Sbjct: 35  PFNSTLKSLCKWGNLDKALRLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHL 94

Query: 83  HMIKTCYR---PPVYLRTRLIVFYNKCECLSDARKMF--DEMRERNVVSWTAMISAYSQK 137
           H++++  R    P  L+T+LI  Y+ C  +++AR++F  D+ +      W AM   YS+ 
Sbjct: 95  HLLRSQNRVLENPT-LKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRN 153

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYV 196
             S EAL L+  ML    +P  F F+  L +C+      +G+ IH+ I+K +  E+   V
Sbjct: 154 GFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVV 213

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++LL +Y + G   E   VFE +P+R+VVS   +I+G+A  G   E +  FR +Q EGM
Sbjct: 214 NNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGM 273

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +++T  ++L   + + AL  GK++H  +L+    + V L NSL+DMY+KCG + Y  +
Sbjct: 274 GFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEK 333

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD M  + + SWN ML G+S +G   E + LF+ M     ++P+ +T++A+LSGCSH G
Sbjct: 334 VFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG-IEPNGITFVALLSGCSHSG 392

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           +   G  +F  ++    G +P +EHY C+VD+LGR+G+  EAL   +N+P  P+ +I GS
Sbjct: 393 LTSEGKRLFSNVMQ-DFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGS 451

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +CR++ NV + E V +RL EIEP N GNYV+LSN+YA+AG WEDV RVRE+M    +
Sbjct: 452 LLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGM 511

Query: 497 TKDPGRSWIELDQILHTFHASDRSH-PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
            KD G SWI++   +HTF A   S      E      +LS   K  GYVP+   VL+D++
Sbjct: 512 KKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDIN 571

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE K   +  HSE+LA  F LI T  G PIR+ KNLR+CVDCH++ K VSKV  R + LR
Sbjct: 572 EEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLR 631

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFHH   G+CSC DYW
Sbjct: 632 DTNRFHHFENGSCSCKDYW 650


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 361/575 (62%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + + AC +  ++  G+++H   +K      +++ + L   Y+KC  + DA K+F+EM 
Sbjct: 44  FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 103

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++ VSWTAMI  YS+     EAL  F +M+  +   ++    + L +C      + G+ 
Sbjct: 104 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 163

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLG 239
           +HS ++K  FES I+VG++L DMY+KAG +  A  VF    E R+VVS T +I GY +  
Sbjct: 164 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 223

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E+ + +F +L+ +G+  N  T++S++ A +  AAL  G Q+H+ V++        + +
Sbjct: 224 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L+DMY KCG L  + + FD + + T I+WN+++  + +HG+G++ +++F  M +   VK
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG-VK 342

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+++T++++L+GCSH G+ + GL  F+ + D   G  P  EHY CV+D+LGRAGR+ EA 
Sbjct: 343 PNAITFISLLTGCSHAGLVEEGLDYFYSM-DKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 401

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI  MPFEP A    S LGACR+H + ++G+   ++L+++EP+N+G  V+LSN+YA+  
Sbjct: 402 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANER 461

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WEDV  VR  M++  V K PG SW+++    H F A D SHP +  +  K+  L  + K
Sbjct: 462 QWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIK 521

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYVP    V  D+D+  KEK+L  HSE++A+ F LI  P G PI V KNLR+CVDCH+
Sbjct: 522 AAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHS 581

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SKV GRK+ +RD +RFHH  +G+CSCGDYW
Sbjct: 582 AIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 178/321 (55%), Gaps = 5/321 (1%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RN+VSWTAMIS  SQ +   EA+  F  M      P +F F++ + +CA     E+G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           KQ+H L +K    S ++VGS+L DMY+K G + +A  VFE +P +D VS TA+I GY+++
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  EEA+  F+K+  E +  +     S L A   L A   G+ VHS V++    S + + 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           N+L DMYSK G +  +  VF   SE R V+S+  ++ GY +     + + +F  +R +  
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG- 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           ++P+  T+ +++  C++    ++G  +  +++  K  F+ +      +VDM G+ G + +
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVM--KINFDEDPFVSSILVDMYGKCGLLEQ 297

Query: 418 ALEFIKNMPFEPTAAILGSLL 438
           A++    +  +PT     SL+
Sbjct: 298 AIQAFDEIG-DPTEIAWNSLV 317



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 10/188 (5%)

Query: 41  QLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           Q+ K L   +E+   G+E     + +L+ AC NQ  L  G ++HA ++K  +    ++ +
Sbjct: 224 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC  L  A + FDE+ +   ++W +++S + Q     +A+ +F RM+    +P
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEA 213
           N  TF ++LT C+ A   E G      + K+      E H    S ++D+  +AGR+ EA
Sbjct: 344 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY---SCVIDLLGRAGRLKEA 400

Query: 214 RGVFECLP 221
           +     +P
Sbjct: 401 KEFINRMP 408


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 355/587 (60%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  LL  C     +  G+++H   IKT +   +Y+   LI  Y+K  
Sbjct: 335 QMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYG 394

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++ + +  ++VVSWT+MI+ Y Q     EAL  F  M      P+    A+ ++
Sbjct: 395 WLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAIS 454

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CAG      G+QIHS +  S + + + + ++L+++YA+ GR  EA  +FE +  +D ++
Sbjct: 455 ACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKIT 514

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++SG+AQ GL EEA+E+F K+   G+  N  T+ S ++A + LA +  GKQ+H+ V+
Sbjct: 515 WNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S   + N+LI +Y KCGS+  ++  F  MSER  +SWN ++   S+HG G E ++
Sbjct: 575 KTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALD 634

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL  F  +   + G  P  +HY CVVD
Sbjct: 635 LFDQMKQEG-LKPNDVTFIGVLAACSHVGLVEEGLGYFKSM-SSEHGIHPRPDHYACVVD 692

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAG++  A +F++ MP    A +  +LL ACRVH N++IGE   + L+E+EP ++ +
Sbjct: 693 ILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSAS 752

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA  G+W     VR++MK++ V K+PGRSWIE+  ++H F   DR HP+  ++
Sbjct: 753 YVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQI 812

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              +  L  +  + GY+     + ++ ++EQK+     HSEKLA+ FGL+  P   P+RV
Sbjct: 813 YKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRV 872

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IKNLR+C DCH + KF S+V GR++ LRD  RFHH   G CSCGD+W
Sbjct: 873 IKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 213/389 (54%), Gaps = 16/389 (4%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMIKTCY 89
           C NG+    + E      EMR   +        +LL AC +   L  G+++H++++K   
Sbjct: 222 CGNGESALEIFE------EMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGM 275

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
            P   +   L+  Y KC  + +A ++F      NVV W  M+ AY Q +   ++ +LF +
Sbjct: 276 SPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQ 335

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M+ +   PNEFT+  +L +C  A    LG+QIH L IK+ FES +YV   L+DMY+K G 
Sbjct: 336 MVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW 395

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +AR + E L  +DVVS T++I+GY Q    +EA+E F+ +Q+ G+  + +  AS ++A
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +G+ A+  G+Q+HS V      + V + N+L+++Y++CG    +  +F+ +  +  I+W
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITW 515

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N M+ G+++ G+  E +E+F  M +   VK +  T+++ +S  ++     +G  +   ++
Sbjct: 516 NGMVSGFAQSGLYEEALEVFIKMYQAG-VKYNVFTFVSSISASANLADIKQGKQIHATVI 574

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             K G   E E    ++ + G+ G + +A
Sbjct: 575 --KTGCTSETEVANALISLYGKCGSIEDA 601



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 201/382 (52%), Gaps = 7/382 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   +  AR++F+++  R+ VSW AM+S Y++     EA+ L+ +M  S   P 
Sbjct: 83  LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +  ++VL++C  A  FE G+ +H+ + K    S   VG++L+ +Y + G +  A  VF 
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P  D V+   +IS +AQ G  E A+E+F ++++ G   + VT AS+L A + +  L  
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+HS++L+  +    +++ SL+D+Y KCG +  +  +F +     V+ WN MLV Y +
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                +  +LF  M     V+P+  TY  +L  C++ G  + G  +   ++  K GFE +
Sbjct: 323 ISDLAKSFDLFCQMVAAG-VRPNEFTYPCLLRTCTYAGEINLGEQI--HLLSIKTGFESD 379

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE-FVGQRL 457
           +   G ++DM  + G + +A   ++ +  +   +    + G  +  +  +  E F   +L
Sbjct: 380 MYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQL 439

Query: 458 MEIEPENAGNYVILSNLYASAG 479
             I P+N G   + S + A AG
Sbjct: 440 FGIWPDNIG---LASAISACAG 458



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 175/361 (48%), Gaps = 3/361 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC        G+ VHA + K        +   LI  Y +   LS A ++F EM   
Sbjct: 148 SVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYC 207

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  +   AL +F  M  S   P+  T A++L +CA       GKQ+H
Sbjct: 208 DRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLH 267

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++K+       +  SLLD+Y K G I EA  +F+     +VV    ++  Y Q+    
Sbjct: 268 SYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLA 327

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ +LF ++   G+  N  TY  +L   +    +  G+Q+H   ++    S + +   LI
Sbjct: 328 KSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLI 387

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  +RR+ + +  + V+SW +M+ GY +H   +E +E F  M+    + PD+
Sbjct: 388 DMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG-IWPDN 446

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +   + +S C+      +G  +   +     G+  ++  +  +V++  R GR  EA    
Sbjct: 447 IGLASAISACAGIKAMRQGQQIHSRVY--VSGYSADVSIWNALVNLYARCGRSKEAFSLF 504

Query: 423 K 423
           +
Sbjct: 505 E 505



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 4/307 (1%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG-FEL 177
           M  R   S    ++ +       + L+LF   +R         FA  L  C G+   + L
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
              IH+  I          G+ L+D+YAK G +  AR VFE L  RD VS  A++SGYA+
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL EEA+ L+ ++   G++      +SVL+A +  A    G+ VH+ V +    S  V+
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+LI +Y + GSL+ + RVF  M     +++N ++  +++ G G   +E+F  MR    
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
             PD VT  ++L+ C+  G  ++G  +   ++  K G  P+    G ++D+  + G + E
Sbjct: 241 T-PDCVTIASLLAACASIGDLNKGKQLHSYLL--KAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 418 ALEFIKN 424
           ALE  K+
Sbjct: 298 ALEIFKS 304



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 5/190 (2%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  I+M   G++     + + ++A  N   ++ G+++HA +IKT       +   LI  Y
Sbjct: 533 EVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLY 592

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + DA+  F EM ERN VSW  +I++ SQ     EAL+LF +M +   +PN+ TF 
Sbjct: 593 GKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFI 652

Query: 164 TVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            VL +C+     E G     S+  +          + ++D+  +AG++  AR   E +P 
Sbjct: 653 GVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMP- 711

Query: 223 RDVVSCTAII 232
              VS  A++
Sbjct: 712 ---VSANAMV 718


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 353/589 (59%), Gaps = 3/589 (0%)

Query: 46   LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
             ++M   GL      Y +LLN   +   L     VH H ++T       + +  I  Y +
Sbjct: 512  FLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIR 571

Query: 106  CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            C  + DAR +FD++  R+V +W AMI   +Q+    EAL+LF++M R    P+  TF  +
Sbjct: 572  CGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINI 631

Query: 166  LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
            L++       E  K++HS    +     + VG++L+  Y+K G +  A+ VF+ + ER+V
Sbjct: 632  LSANVDEEALEWVKEVHSHATDAGLVD-LRVGNALVHTYSKCGNVKYAKQVFDDMVERNV 690

Query: 226  VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
             + T +I G AQ G   +A   F ++  EG++ +  TY S+L+A +   AL   K+VH+H
Sbjct: 691  TTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNH 750

Query: 286  VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
             +   + S + + N+L+ MY+KCGS+  +R VFD+M ER V SW  M+ G ++HG G E 
Sbjct: 751  AVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEA 810

Query: 346  VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
            ++ F  M+ E   KP+  +Y+AVL+ CSH G+ D G   F  +     G EP +EHY C+
Sbjct: 811  LDFFVKMKSEG-FKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQ-DYGIEPTMEHYTCM 868

Query: 406  VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
            VD+LGRAG + EA  FI NMP EP  A  G+LLGAC  + N+++ EF  +  ++++P++A
Sbjct: 869  VDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSA 928

Query: 466  GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
              YV+LSN+YA+ G+WE    VR +M+ K + K+PGRSWIE+D  +H+F   D SHP  +
Sbjct: 929  STYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESK 988

Query: 526  ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
            E+ A++  L  + K  GYVPD   VL + D+E KE+ L  HSEKLA+ +GL+ T    PI
Sbjct: 989  EIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPI 1048

Query: 586  RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            RV KNLR+C DCH   KF+SK+ GR++  RD  RFHH  +G CSCGDYW
Sbjct: 1049 RVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 212/369 (57%), Gaps = 7/369 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+ +    Y  +L  C+ Q  +   ++VH  +IK+     +Y+  +L+  Y +C  L  A
Sbjct: 113 GIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCA 172

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD++ ++N+  WT MI  Y++  H+ +A+ ++ +M +   +PNE T+ ++L +C   
Sbjct: 173 RQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCP 232

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + GK+IH+ II+S F+S + V ++L++MY K G I +A+ +F+ + ER+V+S T +I
Sbjct: 233 VNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMI 292

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            G A  G  +EA  LF ++Q EG I N  TY S+L A +   AL   K+VHSH +   + 
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             + + N+L+ MY+K GS+  +R VFD M+ER + SW  M+ G ++HG G+E   LF L 
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLF-LQ 411

Query: 353 REENKVKPDSVTYLAVLSG---CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
            + N   P+  TYL++L+     S   +E   + V H+  + + GF  ++     ++ M 
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIASTSALE--WVKVVHKHAE-EAGFISDLRIGNALIHMY 468

Query: 410 GRAGRVGEA 418
            + G + +A
Sbjct: 469 AKCGSIDDA 477



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 174/313 (55%), Gaps = 3/313 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++LNA  +   L   + VH+H +       + +   L+  Y K   + DAR +FD M 
Sbjct: 323 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT 382

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL--TSCAGAFGFELG 178
           ER++ SWT MI   +Q     EA +LF++M R+   PN  T+ ++L  ++ A     E  
Sbjct: 383 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWV 442

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K +H    ++ F S + +G++L+ MYAK G I +AR VF+ + +RDV+S  A++ G AQ 
Sbjct: 443 KVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQN 502

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA  +F ++Q EG++ +  TY S+L       AL    +VH H +   + S   + 
Sbjct: 503 GCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVG 562

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++ I MY +CGS+  +R +FD +S R V +WNAM+ G ++   GRE + LF  M+ E  +
Sbjct: 563 SAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI 622

Query: 359 KPDSVTYLAVLSG 371
            PD+ T++ +LS 
Sbjct: 623 -PDATTFINILSA 634


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 369/572 (64%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A V   +   G+ +H   +KT      ++   L+  Y KC  + DAR +F+ +   
Sbjct: 256 SVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD 315

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+ W+ +IS Y+Q   + +A  +F+RM+RS   PNEF+ + VL +CA     +LG+QIH
Sbjct: 316 DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIH 375

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +L+IK  +ES ++VG++L+D+YAK   +  +  +F  L + + VS   II GY Q G  E
Sbjct: 376 NLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAE 435

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+ +F++++   ++S  VT++SVL A +  A++ H  Q+HS + +    +  ++ NSLI
Sbjct: 436 DALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLI 495

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D Y+KCG +  + +VF+++ +  V+SWNA++ GY+ HG   + +ELFN M + +  KP+ 
Sbjct: 496 DTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSD-TKPND 554

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++A+LS C   G+ ++GL++F+ +       +P ++HY C+V +LGRAGR+ +AL+FI
Sbjct: 555 VTFVALLSVCGSTGLVNQGLSLFNSMT-MDHRIKPSMDHYTCIVRLLGRAGRLNDALKFI 613

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            ++P  P+  +  +LL +C VH NV +G+F  ++++EIEP++   YV+LSN+YA+AG  +
Sbjct: 614 GDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILD 673

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  +R+ M+   V K+ G SW+E+   +H F      HP    ++A ++ L++K    G
Sbjct: 674 QVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREG 733

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD++ VL+DVDEE+K ++L  HSE+LAL +GL  TP G PIR++KNLR C+DCH   K
Sbjct: 734 YVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFK 793

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+  R++ +RD NRFHH  EG CSCGDYW
Sbjct: 794 VISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 192/346 (55%), Gaps = 3/346 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA   K  +    ++ + LI  Y+ C  +S AR +FD +  ++ V+WTAM+S YS+   
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +ALN F +M  +  +PN F   +VL +        LGK IH   +K+  ++  +VG +
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGA 291

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLDMYAK G I +AR VFE +P  DV+  + +IS YAQ   +E+A E+F ++    ++ N
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             + + VL A + +A L  G+Q+H+ V++    S + + N+L+D+Y+KC ++  S  +F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           ++ +   +SWN ++VGY + G   + + +F  MR  + V    VT+ +VL  C++     
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAH-VLSTQVTFSSVLRACANTASIK 470

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             + + H +++ K  F  +      ++D   + G + +AL+  +++
Sbjct: 471 HTVQI-HSLIE-KSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI 514



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 205/409 (50%), Gaps = 11/409 (2%)

Query: 23  VPSFP-PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDT--LLNACVNQRTLRGGQR 79
           +P+F  PN    + L +N  L     E+A+L L  + + Y    LL  C+ +   R G+ 
Sbjct: 10  LPTFSQPNVPLRRNLAANAALQWLDDELASLALP-KLDSYACARLLQRCIARGDARAGRA 68

Query: 80  VHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           VHA +++     +   +    L+  Y K   L+ AR++FD M ERN+VS+  ++  Y+ +
Sbjct: 69  VHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALR 128

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EA  LF R+ R   E N F   T+L          L   IH+   K   + + +VG
Sbjct: 129 GGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVG 188

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           SSL+D Y+  G +  AR VF+ +  +D V+ TA++S Y++  + E+A+  F K+++ G  
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N     SVL A   L++   GK +H   ++    +   +  +L+DMY+KCG +  +R V
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGG 376
           F+ +    VI W+ ++  Y++     +  E+F  +MR  + V P+  +   VL  C++  
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMR--SSVVPNEFSLSGVLQACANVA 366

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             D G  + + ++  K G+E E+     ++D+  +   +  +LE  +++
Sbjct: 367 FLDLGQQIHNLVI--KLGYESELFVGNALMDVYAKCRNMENSLEIFRSL 413



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI--YVGSSLLDMYAKAGRIHEARG 215
           + +  A +L  C        G+ +H+ +++    + +  +  + LL++YAK G +  AR 
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +PER++VS   ++ GYA  G  EEA  LFR+LQ EG   N+    ++L  L  + A
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
            G    +H+   +        + +SLID YS CG+++++R VFD +  +  ++W AM+  
Sbjct: 166 PGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG--CSHGGMEDRGLAVFHEIVDCKD 393
           YS++ +  + +  F+ MR     KP+     +VL    C    +  +G+        C  
Sbjct: 226 YSENDIPEDALNTFSKMRMAG-AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
             EP +   G ++DM  + G + +A    + +P +    IL S L
Sbjct: 285 --EPHVG--GALLDMYAKCGYIEDARTVFEIIPHDDV--ILWSFL 323



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC N  +++   ++H+ + K+ +     +   LI  Y KC C+ DA K+F+ + 
Sbjct: 456 FSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESII 515

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + +VVSW A+IS Y+    + +AL LF RM +SDT+PN+ TF  +L+ C        G  
Sbjct: 516 QCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLS 575

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           + +S+ +    +  +   + ++ +  +AGR+++A
Sbjct: 576 LFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDA 609


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/565 (41%), Positives = 352/565 (62%), Gaps = 5/565 (0%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G+ +H + ++  +   V + T L+  Y KC+CL  ARK+FD M  RN VSW+AMI
Sbjct: 224 KALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMI 283

Query: 132 SAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
             Y       EAL LF +M+  D  +P   T  +VL +CA       G+++H  IIK   
Sbjct: 284 GGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGX 343

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
              I +G++LL MYAK G I +A   F+ +  +D VS +AI+SG  Q G    A+ +FR 
Sbjct: 344 VLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRM 403

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +Q+ G+  +  T   VL A S LAAL HG   H +++     +  ++ N+LIDMYSKCG 
Sbjct: 404 MQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGK 463

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           ++++R VF+ M    ++SWNAM++GY  HG+G E + LF+ +     +KPD +T++ +LS
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG-LKPDDITFICLLS 522

Query: 371 GCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH G+   G   F  +   +D    P +EH  C+VD+LGRAG + EA  FI+NMPFEP
Sbjct: 523 SCSHSGLVMEGRLWFDAM--SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 580

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  +LL ACR+H N+++GE V +++  + PE+ GN+V+LSN+Y++AGRW+D   +R 
Sbjct: 581 DVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRI 640

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
             K+  + K PG SWIE++ I+H F   D+SH    +++ K+++L V+ K  GY  + S 
Sbjct: 641 TQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSF 700

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           V  DV+EE+KE++LL HSEKLA+ FG++    G PI V KNLR+C DCH   KF++ +  
Sbjct: 701 VFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITK 760

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++++RD NRFHH   GTC+CGD+W
Sbjct: 761 REITVRDANRFHHFKNGTCNCGDFW 785



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 214/407 (52%), Gaps = 5/407 (1%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
             Y  LL AC+  ++L   +++H H +K        +  +L   Y  C  +  AR++FDE
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +   +V+ W  +I AY+       A++L+  ML     PN++T+  VL +C+G    E G
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            +IHS       ES ++V ++L+D YAK G + EA+ +F  +  RDVV+  A+I+G +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           GL ++A++L  ++Q EG+  N  T   VL  +    ALGHGK +H + +R    + VV+ 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
             L+DMY+KC  L Y+R++FD M  R  +SW+AM+ GY      +E +ELF+ M  ++ +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P  VT  +VL  C+      RG  +   I+  K G   +I     ++ M  + G + +A
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYII--KLGXVLDILLGNTLLSMYAKCGVIDDA 366

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYN--VDIGEFVGQRLMEIEPE 463
           + F   M  + + +   +++  C  + N  V +  F   +L  I+P+
Sbjct: 367 IRFFDXMNPKDSVS-FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 202/408 (49%), Gaps = 13/408 (3%)

Query: 28  PNP------QNLKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           PNP      Q ++    NG    A+     M  LG+      Y  +L AC     +  G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
            +H+H         V++ T L+ FY KC  L +A+++F  M  R+VV+W AMI+  S   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +A+ L ++M      PN  T   VL +   A     GK +H   ++ +F++ + VG+
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMI 257
            LLDMYAK   +  AR +F+ +  R+ VS +A+I GY      +EA+ELF ++ + + M 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
              VT  SVL A + L  L  G+++H ++++      ++L N+L+ MY+KCG +  + R 
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M+ +  +S++A++ G  ++G     + +F +M + + + PD  T L VL  CSH   
Sbjct: 370 FDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM-QLSGIDPDLTTMLGVLPACSHLAA 428

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
              G      ++    GF  +      ++DM  + G++  A E    M
Sbjct: 429 LQHGFCSHGYLI--VRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 150/313 (47%), Gaps = 11/313 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC     L  G+++H ++IK      + L   L+  Y KC  + DA + FD M  +
Sbjct: 317 SVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPK 376

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS++A++S   Q  ++  AL++F  M  S  +P+  T   VL +C+     + G   H
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             +I   F +   + ++L+DMY+K G+I  AR VF  +   D+VS  A+I GY   GL  
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSL 301
           EA+ LF  L   G+  + +T+  +L++ S    +  G+     + R F I   +     +
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556

Query: 302 IDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELFNLMREENK 357
           +D+  + G +  +     NM  E  V  W+A+L     H    +G EV       ++   
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEV------SKKIQS 610

Query: 358 VKPDSVTYLAVLS 370
           + P+S     +LS
Sbjct: 611 LGPESTGNFVLLS 623


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 361/575 (62%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + + AC +  ++  G+++H   +K      +++ + L   Y+KC  + DA K+F+EM 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++ VSWTAMI  YS+     EAL  F +M+  +   ++    + L +C      + G+ 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLG 239
           +HS ++K  FES I+VG++L DMY+KAG +  A  VF    E R+VVS T +I GY +  
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E+ + +F +L+ +G+  N  T++S++ A +  AAL  G Q+H+ V++        + +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L+DMY KCG L  + + FD + + T I+WN+++  + +HG+G++ +++F  M +   VK
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG-VK 407

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+++T++++L+GCSH G+ + GL  F+ + D   G  P  EHY CV+D+LGRAGR+ EA 
Sbjct: 408 PNAITFISLLTGCSHAGLVEEGLDYFYSM-DKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 466

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI  MPFEP A    S LGACR+H + ++G+   ++L+++EP+N+G  V+LSN+YA+  
Sbjct: 467 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANER 526

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WEDV  VR  M++  V K PG SW+++    H F A D SHP +  +  K+  L  + K
Sbjct: 527 QWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIK 586

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYVP    V  D+D+  KEK+L  HSE++A+ F LI  P G PI V KNLR+CVDCH+
Sbjct: 587 AAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHS 646

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SKV GRK+ +RD +RFHH  +G+CSCGDYW
Sbjct: 647 AIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 205/368 (55%), Gaps = 5/368 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + LR G+++HA +I   Y P  +L   L+  Y+KC  L  A K+FD M +RN+VSWTAMI
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMI 78

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           S  SQ +   EA+  F  M      P +F F++ + +CA     E+GKQ+H L +K    
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S ++VGS+L DMY+K G + +A  VFE +P +D VS TA+I GY+++G  EEA+  F+K+
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             E +  +     S L A   L A   G+ VHS V++    S + + N+L DMYSK G +
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDM 258

Query: 312 TYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
             +  VF   SE R V+S+  ++ GY +     + + +F  +R +  ++P+  T+ +++ 
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG-IEPNEFTFSSLIK 317

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            C++    ++G  +  +++  K  F+ +      +VDM G+ G + +A++    +  +PT
Sbjct: 318 ACANQAALEQGTQLHAQVM--KINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPT 374

Query: 431 AAILGSLL 438
                SL+
Sbjct: 375 EIAWNSLV 382



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 10/188 (5%)

Query: 41  QLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           Q+ K L   +E+   G+E     + +L+ AC NQ  L  G ++HA ++K  +    ++ +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC  L  A + FDE+ +   ++W +++S + Q     +A+ +F RM+    +P
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 408

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEA 213
           N  TF ++LT C+ A   E G      + K+      E H    S ++D+  +AGR+ EA
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY---SCVIDLLGRAGRLKEA 465

Query: 214 RGVFECLP 221
           +     +P
Sbjct: 466 KEFINRMP 473



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 114/273 (41%), Gaps = 50/273 (18%)

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           M+ +    A V+   +    L  GKQ+H+ ++         L N L++MYSKCG L ++ 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++FD M +R ++SW AM+ G S++    E +  F  MR   +V P    + + +  C+  
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASL 119

Query: 376 G--------------------------MED---------RGLAVFHEIVDCKDGFEPEIE 400
           G                          +ED             VF E+  CKD    E+ 
Sbjct: 120 GSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM-PCKD----EVS 174

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA---ILGSLLGACRVHYNVDIGEFVGQRL 457
            +  ++D   + G   EAL   K M  E       +L S LGAC        G  V   +
Sbjct: 175 -WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 458 MEIEPEN---AGNYVILSNLYASAGRWEDVTRV 487
           +++  E+    GN   L+++Y+ AG  E  + V
Sbjct: 234 VKLGFESDIFVGN--ALTDMYSKAGDMESASNV 264


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/657 (37%), Positives = 364/657 (55%), Gaps = 72/657 (10%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M T GL        + + AC     L+  ++VH     + +    ++++ L+  Y KC 
Sbjct: 104 QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN 163

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF----- 162
            + DA ++FD M E +VVSW+A+++AY+++    EA  LF  M  S  +PN  ++     
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223

Query: 163 --------------------------ATVLTSCAGAFG----FELGKQIHSLIIKSNFES 192
                                      T ++S   A G      +G  IH  +IK    S
Sbjct: 224 GFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVS 283

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA---------------- 236
              V S+L+DMY K     E   VF+ +   DV SC A I G +                
Sbjct: 284 DKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLK 343

Query: 237 -------------------QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
                              Q G D EA+ELFR++Q+ G+  N VT   +L A   +AAL 
Sbjct: 344 DQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALM 403

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           HGK  H   LR  I + V + ++LIDMY+KCG +  SR  FD +  + ++ WNA++ GY+
Sbjct: 404 HGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYA 463

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG  +E +E+F+LM+   + KPD +++  VLS CS  G+ + G   F+ +   K G E 
Sbjct: 464 MHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGLTEEGSYYFNSM-SSKYGIEA 521

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            +EHY C+V +L RAG++ +A   I+ MP  P A + G+LL +CRVH NV +GE   ++L
Sbjct: 522 RVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKL 581

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            E+EP N GNY++LSN+YAS G W +V RVR++MK K + K+PG SWIE+   +H   A 
Sbjct: 582 FELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAG 641

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D+SHP   ++  K+ +LS++ K+ GY P+++ VL DV+E+ KE++L GHSEKLA+ FGL+
Sbjct: 642 DKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLL 701

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TP G P++VIKNLRIC DCH   KF+S    R++ +RD NRFHH  EG CSCGDYW
Sbjct: 702 NTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 181/363 (49%), Gaps = 39/363 (10%)

Query: 63  TLLNACVNQRT--LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           T+ N C+N  T  L   ++ HAH++KT      +L T+L+  Y    C +DA  + D + 
Sbjct: 17  TIFN-CLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVP 75

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E NV S++ +I A+S+      AL+ F +ML     P+     + + +CAG    +  +Q
Sbjct: 76  EPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQ 135

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H +   S F+S  +V SSL+ MY K  +I +A  VF+ + E DVVS +A+++ YA+ G 
Sbjct: 136 VHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGC 195

Query: 241 DEEAIELFRKLQVEGMISNYVTY-----------------------------------AS 265
            +EA  LF ++   G+  N +++                                   +S
Sbjct: 196 VDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISS 255

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL A+  L  L  G  +H +V++  + S   + ++LIDMY KC   +   +VFD M    
Sbjct: 256 VLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMD 315

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V S NA + G S++G     + LF  ++++  ++ + V++ ++++ CS  G +   L +F
Sbjct: 316 VGSCNAFIFGLSRNGQVESSLRLFRQLKDQG-MELNVVSWTSMIACCSQNGRDIEALELF 374

Query: 386 HEI 388
            E+
Sbjct: 375 REM 377



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 39/326 (11%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G E       ++L A  +   L  G  +H ++IK        + + LI  Y K
Sbjct: 238 FLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGK 297

Query: 106 CECLSDARKMFDEM-----------------------------------RERNVVSWTAM 130
           C C S+  ++FD+M                                    E NVVSWT+M
Sbjct: 298 CSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSM 357

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I+  SQ     EAL LF  M  +  +PN  T   +L +C        GK  H   ++   
Sbjct: 358 IACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGI 417

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
            + +YVGS+L+DMYAK GRI  +R  F+ +P +++V   A+I+GYA  G  +EA+E+F  
Sbjct: 418 STDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDL 477

Query: 251 LQVEGMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           +Q  G   + +++  VL+A   SGL   G     +S   ++ I + V     ++ + S+ 
Sbjct: 478 MQRSGQKPDIISFTCVLSACSQSGLTEEG-SYYFNSMSSKYGIEARVEHYACMVTLLSRA 536

Query: 309 GSLTYSRRVFDNMS-ERTVISWNAML 333
           G L  +  +   M        W A+L
Sbjct: 537 GKLEQAYAMIRRMPVNPDACVWGALL 562



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 14/267 (5%)

Query: 9   RAFSSLTFTQQQLTVPSFPPNPQNLKTLCS-NGQLTKAL---IEMATLGLEMRFEEYDTL 64
           R F  L     +L V S+     ++   CS NG+  +AL    EM   G++        L
Sbjct: 337 RLFRQLKDQGMELNVVSW----TSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC N   L  G+  H   ++      VY+ + LI  Y KC  +  +R  FD +  +N+
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK-QIHS 183
           V W A+I+ Y+    + EA+ +F  M RS  +P+  +F  VL++C+ +   E G    +S
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLG 239
           +  K   E+ +   + ++ + ++AG++ +A  +   +P   D     A++S    +  + 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASV 266
           L E A E   +L+      NY+  +++
Sbjct: 573 LGEVAAEKLFELEPSN-PGNYILLSNI 598


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 356/576 (61%), Gaps = 8/576 (1%)

Query: 63   TLLN---ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
            TL+N   AC N  +L  G+ +H   +K C+   V     L+  Y+KC  L+DA + F++M
Sbjct: 656  TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 120  RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             ++ VVSWT++I+AY ++    +A+ LF  M      P+ ++  +VL +CA     + G+
Sbjct: 716  GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGR 775

Query: 180  QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
             +H+ I K+N    + V ++L+DMYAK G + EA  VF  +P +D+VS   +I GY++  
Sbjct: 776  DVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNS 835

Query: 240  LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            L  EA++LF ++Q E    + +T A +L A   LAAL  G+ +H  +LR    S + + N
Sbjct: 836  LPNEALKLFAEMQKESR-PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN 894

Query: 300  SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            +LIDMY KCGSL ++R +FD + E+ +I+W  M+ G   HG+G E +  F  MR    +K
Sbjct: 895  ALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAG-IK 953

Query: 360  PDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +T+ ++L  CSH G+ + G   F+ ++ +C    EP++EHY C+VD+L R G + +A
Sbjct: 954  PDEITFTSILYACSHSGLLNEGWGFFNSMISECN--MEPKLEHYACMVDLLARTGNLSKA 1011

Query: 419  LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
               I+ MP +P A I G+LL  CR+H++V++ E V + + E+EP+NAG YV+L+N+YA A
Sbjct: 1012 YNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEA 1071

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
             +WE+V ++RE + ++ + K PG SWIE+     TF ++D +HP  + + + +  L +K 
Sbjct: 1072 EKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKM 1131

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            K  G+ P M   L +  + +KE  L GHSEKLA+ FG++  P G  IRV KNLR+C DCH
Sbjct: 1132 KNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCH 1191

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              AKF+SK   R++ LRD NRFHH  +G CSC D+W
Sbjct: 1192 EMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 203/388 (52%), Gaps = 7/388 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +R+H  + K  +     +   LI  Y K   +  A K+FDE+ +R+VVSW +MIS     
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
             S  AL  F++ML      +  T    + +CA      LG+ +H   +K+ F   +   
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFN 692

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++LLDMY+K G +++A   FE + ++ VVS T++I+ Y + GL ++AI LF +++ +G+ 
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  +  SVL A +   +L  G+ VH+++ +  +   + + N+L+DMY+KCGS+  +  V
Sbjct: 753 PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +  + ++SWN M+ GYSK+ +  E ++LF  M++E+  +PD +T   +L  C     
Sbjct: 813 FSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES--RPDGITMACLLPACGSLAA 870

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            + G  +   I+  ++G+  E+     ++DM  + G +  A      +P E        +
Sbjct: 871 LEIGRGIHGCIL--RNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVM 927

Query: 438 LGACRVH--YNVDIGEFVGQRLMEIEPE 463
           +  C +H   N  I  F   R+  I+P+
Sbjct: 928 ISGCGMHGLGNEAIATFQKMRIAGIKPD 955



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 210/434 (48%), Gaps = 13/434 (2%)

Query: 2   RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKT--LCSNGQLTKA--LIEMATLGLEMR 57
           ++P ++    S L   +    V +F    +N K    C  G L  A  L+ M+    E+ 
Sbjct: 392 QQPSRKYFLSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKS-ELD 450

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
              Y ++L  C   + L+ G+ VH+ +          L  +L+  Y  C  L + R++FD
Sbjct: 451 LNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFD 510

Query: 118 EMRERN-VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            +   N V  W  M+S Y++     E++ LF +M +     N +TF+ +L  C    G  
Sbjct: 511 HILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL-KCFATLG-R 568

Query: 177 LG--KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           +G  K+IH  + K  F S+  V +SL+  Y K+G +  A  +F+ L +RDVVS  ++ISG
Sbjct: 569 VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG 628

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
               G    A+E F ++ +  +  +  T  + + A + + +L  G+ +H   ++      
Sbjct: 629 CVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSRE 688

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V+  N+L+DMYSKCG+L  + + F+ M ++TV+SW +++  Y + G+  + + LF  M E
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-E 747

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V PD  +  +VL  C+ G   D+G  V + I   K+     +     ++DM  + G 
Sbjct: 748 SKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR--KNNMALCLPVSNALMDMYAKCGS 805

Query: 415 VGEALEFIKNMPFE 428
           + EA      +P +
Sbjct: 806 MEEAYLVFSQIPVK 819


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 357/574 (62%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +LL +CV ++ +  G+++HA + +        L T+L+  Y  C  L++A  +FD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RN+  W  MI  Y+       A++L+ +M      P++FTF  VL +C+     E GK+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  +I+S  ES ++VG++L+DMYAK G +  AR VF+ + ERDVV   ++++ Y+Q G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E++ L R +   G+     T+   + A +    L  GK++H +  R    S   ++ +
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K GS+  +R +F+ + E+ V+SWNAM+ GY+ HG   E ++LF  M+   KV P
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK--GKVLP 301

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T++ VL+ CSHGG+ + G   F  ++       P ++HY C++D+LG  GR+ EA +
Sbjct: 302 DHITFVGVLAACSHGGLLNEGKMHFRSMIS-DFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            I  M  EP A + G+LL +C++H NV++GE   ++L+E+EP++ GNYVILSN+YA AG+
Sbjct: 361 LIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGK 420

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+ V R+R+LM  K + K    SWIE+   +H F + D SHP  E + A++K+     KE
Sbjct: 421 WDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKE 480

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGY P +  V +DV++++K  ++  HSE+LA+ FGLI T  G  + +IKNLRIC DCH  
Sbjct: 481 AGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVA 540

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+  R++++RD NR+HH  +G CSCGD+W
Sbjct: 541 IKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 396/667 (59%), Gaps = 37/667 (5%)

Query: 2   RRPKKQSRAFSS--LTFTQQQLTVP-SFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRF 58
           R+P +   AF +   +FT + L++  S   + Q   +LC++G++ +A  +  T  +    
Sbjct: 4   RKPSRSFNAFLNPLYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAY-DTFTSEIWSDP 62

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---------- 108
             +  LL +C+   +L GG++VH+ +I +      ++   L+ FY+K             
Sbjct: 63  SLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSN 122

Query: 109 ---------------------LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
                                L  A+K+FDEM ERN+ +W AMI+  +Q   + +AL+LF
Sbjct: 123 MPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 182

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
             M      P+EFT  +VL  CAG      G+++H+ ++K  FE    VGSSL  MY K+
Sbjct: 183 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 242

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G + +   + + +P R VV+   +I+G AQ G  EE +  +  +++ G   + +T+ SVL
Sbjct: 243 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 302

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           +A S LA LG G+Q+H+ V++    S + + +SLI MYS+ G L  S + F +     V+
Sbjct: 303 SACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVV 362

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            W++M+  Y  HG G E +ELF+ M E+ K++ + VT+L++L  CSH G++++G   F  
Sbjct: 363 LWSSMIAAYGFHGRGEEALELFHQM-EDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDL 421

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +V  K   +P IEHY CVVD+LGRAGR+ EA   I++MP +P   I  +LL AC++H   
Sbjct: 422 MVK-KYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEA 480

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++ E + + +++++P +A +YV+LSN++ASA  W +V+++R+ M++++V K+PG SW+EL
Sbjct: 481 EMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLEL 540

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
             ++H F   D+SHP   E+   +K+L  + K+ GYVP++  VL+D+D E+KE  L  HS
Sbjct: 541 KNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHS 600

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EK A+ F L+ T E  PIRV+KNLR+C DCHN  K +S++  R++ +RD +RFHH  +G 
Sbjct: 601 EKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGE 660

Query: 628 CSCGDYW 634
           CSCG+YW
Sbjct: 661 CSCGNYW 667


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/565 (41%), Positives = 352/565 (62%), Gaps = 5/565 (0%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G+ +H + ++  +   V + T L+  Y KC+CL  ARK+FD M  RN VSW+AMI
Sbjct: 224 KALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMI 283

Query: 132 SAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
             Y       EAL LF +M+  D  +P   T  +VL +CA       G+++H  IIK   
Sbjct: 284 GGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGS 343

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
              I +G++LL MYAK G I +A   F+ +  +D VS +AI+SG  Q G    A+ +FR 
Sbjct: 344 VLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRM 403

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +Q+ G+  +  T   VL A S LAAL HG   H +++     +  ++ N+LIDMYSKCG 
Sbjct: 404 MQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGK 463

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           ++++R VF+ M    ++SWNAM++GY  HG+G E + LF+ +     +KPD +T++ +LS
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG-LKPDDITFICLLS 522

Query: 371 GCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH G+   G   F  +   +D    P +EH  C+VD+LGRAG + EA  FI+NMPFEP
Sbjct: 523 SCSHSGLVMEGRLWFDAM--SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 580

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  +LL ACR+H N+++GE V +++  + PE+ GN+V+LSN+Y++AGRW+D   +R 
Sbjct: 581 DVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRI 640

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
             K+  + K PG SWIE++ I+H F   D+SH    +++ K+++L V+ K  GY  + S 
Sbjct: 641 TQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSF 700

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           V  DV+EE+KE++LL HSEKLA+ FG++    G PI V KNLR+C DCH   KF++ +  
Sbjct: 701 VFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITK 760

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++++RD NRFHH   GTC+CGD+W
Sbjct: 761 REITVRDANRFHHFKNGTCNCGDFW 785



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/415 (31%), Positives = 219/415 (52%), Gaps = 8/415 (1%)

Query: 54  LEMRFE---EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           + +RFE    Y  LL AC+  ++L   +++H H +K        +  +L   Y  C  + 
Sbjct: 1   MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            AR++FDE+   +V+ W  +I AY+       A++L+  ML     PN++T+  VL +C+
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
           G    E G +IHS       ES ++V ++L+D YAK G + EA+ +F  +  RDVV+  A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+G +  GL ++A++L  ++Q EG+  N  T   VL  +    ALGHGK +H + +R  
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
             + VV+   L+DMY+KC  L Y+R++FD M  R  +SW+AM+ GY      +E +ELF+
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M  ++ + P  VT  +VL  C+      RG  +   I+  K G   +I     ++ M  
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII--KLGSVLDILLGNTLLSMYA 358

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN--VDIGEFVGQRLMEIEPE 463
           + G + +A+ F   M  + + +   +++  C  + N  V +  F   +L  I+P+
Sbjct: 359 KCGVIDDAIRFFDEMNPKDSVS-FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 202/408 (49%), Gaps = 13/408 (3%)

Query: 28  PNP------QNLKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           PNP      Q ++    NG    A+     M  LG+      Y  +L AC     +  G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
            +H+H         V++ T L+ FY KC  L +A+++F  M  R+VV+W AMI+  S   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +A+ L ++M      PN  T   VL +   A     GK +H   ++ +F++ + VG+
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMI 257
            LLDMYAK   +  AR +F+ +  R+ VS +A+I GY      +EA+ELF ++ + + M 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
              VT  SVL A + L  L  G+++H ++++      ++L N+L+ MY+KCG +  + R 
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRF 369

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M+ +  +S++A++ G  ++G     + +F +M + + + PD  T L VL  CSH   
Sbjct: 370 FDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM-QLSGIDPDLTTMLGVLPACSHLAA 428

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
              G      ++    GF  +      ++DM  + G++  A E    M
Sbjct: 429 LQHGFCSHGYLI--VRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 11/313 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC     L  G+++H ++IK      + L   L+  Y KC  + DA + FDEM  +
Sbjct: 317 SVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK 376

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS++A++S   Q  ++  AL++F  M  S  +P+  T   VL +C+     + G   H
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSH 436

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             +I   F +   + ++L+DMY+K G+I  AR VF  +   D+VS  A+I GY   GL  
Sbjct: 437 GYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGM 496

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSL 301
           EA+ LF  L   G+  + +T+  +L++ S    +  G+     + R F I   +     +
Sbjct: 497 EALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556

Query: 302 IDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELFNLMREENK 357
           +D+  + G +  +     NM  E  V  W+A+L     H    +G EV       ++   
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEV------SKKIQS 610

Query: 358 VKPDSVTYLAVLS 370
           + P+S     +LS
Sbjct: 611 LGPESTGNFVLLS 623


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 373/635 (58%), Gaps = 11/635 (1%)

Query: 8   SRAFSSLTFTQQ---QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE---Y 61
           S +F  +TF +Q    L  P   P    ++    N     AL+  + + L     +   +
Sbjct: 63  SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EM 119
             LL AC     L+ G+ VHA + +  +   V+++  LI  Y KC  L  AR +F+   +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL 182

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ER +VSWTA++SAY+Q     EAL +F +M + D +P+     +VL +       + G+
Sbjct: 183 PERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGR 242

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH+ ++K   E    +  SL  MYAK G++  A+ +F+ +   +++   A+ISGYA+ G
Sbjct: 243 SIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EAI++F ++  + +  + ++  S ++A + + +L   + ++ +V R +    V + +
Sbjct: 303 YAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDM++KCGS+  +R VFD   +R V+ W+AM+VGY  HG  RE + L+  M E   V 
Sbjct: 363 ALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM-ERGGVH 421

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT+L +L  C+H GM   G   F+ + D K    P+ +HY CV+D+LGRAG + +A 
Sbjct: 422 PNDVTFLGLLMACNHSGMVREGWWFFNRMADHK--INPQQQHYACVIDLLGRAGHLDQAY 479

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E IK MP +P   + G+LL AC+ H +V++GE+  Q+L  I+P N G+YV LSNLYA+A 
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W+ V  VR  MKEK + KD G SW+E+   L  F   D+SHP  EE+  +V+ +  + K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E G+V +    L+D+++E+ E+ L  HSE++A+ +GLI TP+G P+R+ KNLR CV+CH 
Sbjct: 600 EGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHA 659

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 660 ATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 209/368 (56%), Gaps = 9/368 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+++  ++  L+   ++HA ++    +   +L T+LI   +    ++ AR++FD++ 
Sbjct: 24  YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              +  W A+I  YS+  H  +AL ++  M  +   P+ FTF  +L +C+G    ++G+ 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC--LPERDVVSCTAIISGYAQL 238
           +H+ + +  F++ ++V + L+ +YAK  R+  AR VFE   LPER +VS TAI+S YAQ 
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+E+F +++   +  ++V   SVL A + L  L  G+ +H+ V++  +     L 
Sbjct: 201 GEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL  MY+KCG +  ++ +FD M    +I WNAM+ GY+K+G  RE +++F+ M  ++ V
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-V 319

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV-GE 417
           +PD+++  + +S C+  G  ++  +++  +   +  +  ++     ++DM  + G V G 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYV--GRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 418 ALEFIKNM 425
            L F + +
Sbjct: 378 RLVFDRTL 385


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 353/572 (61%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  + + LR G+ +H +  +  +   V + T ++  Y KC  +  AR +F  M  R
Sbjct: 248 SVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSR 307

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSW  MI  Y+Q   S EA   F++ML    EP   +    L +CA     E G+ +H
Sbjct: 308 NVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVH 367

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+ +      + V +SL+ MY+K  R+  A  VF  L  + VV+  A+I GYAQ G   
Sbjct: 368 RLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVN 427

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LF ++Q   +  +  T  SV+TAL+ L+     K +H   +R  +   V +  +LI
Sbjct: 428 EALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALI 487

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D ++KCG++  +R++FD M ER VI+WNAM+ GY  +G GRE ++LFN M +   VKP+ 
Sbjct: 488 DTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEM-QNGSVKPNE 546

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+L+V++ CSH G+ + G+  F  + +   G EP ++HYG +VD+LGRAGR+ +A +FI
Sbjct: 547 ITFLSVIAACSHSGLVEEGMYYFESMKE-NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFI 605

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++MP +P   +LG++LGACR+H NV++GE     L +++P++ G +V+L+N+YASA  W+
Sbjct: 606 QDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWD 665

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V RVR  M++K + K PG S +EL   +HTF++   +HP  + + A ++ L  + K AG
Sbjct: 666 KVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAG 725

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD + + +DV+E+ KE++L  HSE+LA+ FGL+ T  G  I + KNLR+C DCH   K
Sbjct: 726 YVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATK 784

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++S V GR++ +RD  RFHH   G CSCGDYW
Sbjct: 785 YISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 232/470 (49%), Gaps = 37/470 (7%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           ++  LL        LR G+ +H  +I   ++  ++  T ++  Y KC  + DA KMF+ M
Sbjct: 144 DFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERM 203

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            +R++VSW  +++ Y+Q   +  A+ + ++M  +  +P+  T  +VL + A      +G+
Sbjct: 204 PQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGR 263

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH    ++ FE  + V +++LD Y K G +  AR VF+ +  R+VVS   +I GYAQ G
Sbjct: 264 SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA   F K+  EG+    V+    L A + L  L  G+ VH  +   +I   V + N
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMN 383

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLI MYSKC  +  +  VF N+  +TV++WNAM++GY+++G   E + LF  M+  + +K
Sbjct: 384 SLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD-IK 442

Query: 360 PDSVTYLAVLSGCS-----------HG----GMEDRGLAVFHEIVD--CKDGF------- 395
           PDS T ++V++  +           HG     + D+ + V   ++D   K G        
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 396 -----EPEIEHYGCVVDMLGRAGRVGEALEF---IKNMPFEPTAAILGSLLGACRVHYNV 447
                E  +  +  ++D  G  G   EAL+    ++N   +P      S++ AC     V
Sbjct: 503 FDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLV 562

Query: 448 DIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           + G +  + + E   +EP    +Y  + +L   AGR +D  +  + M  K
Sbjct: 563 EEGMYYFESMKENYGLEP-TMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 221/442 (50%), Gaps = 23/442 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C + + L    ++   +IK  +      +T+LI  + K   +++A ++F+ +  + 
Sbjct: 50  LLELCTSLKEL---HQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKL 106

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            V +  M+  Y++ +   +A+  + RM   +  P  + F  +L           G++IH 
Sbjct: 107 DVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG 166

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           ++I + F+S+++  ++++++YAK  +I +A  +FE +P+RD+VS   +++GYAQ G    
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+++  ++Q  G   + +T  SVL A++ L AL  G+ +H +  R      V +  +++D
Sbjct: 227 AVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLD 286

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
            Y KCGS+  +R VF  MS R V+SWN M+ GY+++G   E    F  M +E  V+P +V
Sbjct: 287 TYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG-VEPTNV 345

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           + +  L  C++ G  +RG  V   + + K GF+  +     ++ M  +  RV  A     
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSV--MNSLISMYSKCKRVDIAASVFG 403

Query: 424 NMPFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA- 478
           N+  +      A ILG     C    N  +  F   +  +I+P+   ++ ++S + A A 
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGC---VNEALNLFCEMQSHDIKPD---SFTLVSVITALAD 457

Query: 479 ------GRWEDVTRVRELMKEK 494
                  +W     +R LM + 
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKN 479


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 357/590 (60%), Gaps = 4/590 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYN 104
            I+M   G+++       +  AC N  TL  G+ +H++ IK       V     L+  Y+
Sbjct: 340 FIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYS 399

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
           KC  L+ A ++F+ M E+ VVSWT+MI+ Y ++  S  A+ LF  M      P+ +   +
Sbjct: 400 KCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +L +CA     + GK +H  I ++N E++ +V ++L DMYAK G + +A  VF  + ++D
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           V+S   +I GY +  L  EA+ LF ++Q E    +  T A +L A + LAAL  G+++H 
Sbjct: 520 VISWNTMIGGYTKNSLPNEALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHG 578

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           + LR        + N+++DMY KCG L  +R +FD +  + ++SW  M+ GY  HG G E
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            +  FN MR    ++PD V+++++L  CSH G+ D G  +F+ I+  +   EP +EHY C
Sbjct: 639 AINTFNQMRMTG-IEPDEVSFISILYACSHSGLLDEGWKIFN-IMKKECQIEPNLEHYAC 696

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VD+L R G + +A +FIK MP +P A I G+LL  CR+H++V + E V +R+ E+EPEN
Sbjct: 697 MVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPEN 756

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            G YV+L+N+YA A +WE+V ++R+ + ++ + K+PG SWIE+   ++ F A D S P  
Sbjct: 757 TGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQA 816

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           +++   +K+L  K KE GY P  +  L + DE +KE  L GHSEKLA+ FG++  P G  
Sbjct: 817 KKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKT 876

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IRV KNLR+C DCH  AKF+SK   R++ LRD +RFHH  +G+CSC  YW
Sbjct: 877 IRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 223/431 (51%), Gaps = 15/431 (3%)

Query: 6   KQSRAFSSLTFTQ----QQLTVPSFPP----NPQNLKTLCSNGQLTKALIEMATLGLEMR 57
           K+   FS L+F+       L   S+      + + +   C  G L  A+ E+        
Sbjct: 89  KEYELFSKLSFSSLAYAPALETKSYMDVELDSSRKIVEFCEVGDLKNAM-ELLCSSQNSN 147

Query: 58  FE--EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM 115
           F+   Y ++L  C  ++++R G+RV + +  +       L  +L+  Y KC  L + R +
Sbjct: 148 FDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMV 207

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           FD++ E  +  W  MIS YS   +  E++NLF +ML    +PN +TF+++L   A     
Sbjct: 208 FDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARV 267

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           E G+Q+H LI K  F S+  V +SL+  Y    ++  A+ +F+ L +RDV+S  ++ISGY
Sbjct: 268 EEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGY 327

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSY 294
            + GLD+  IE+F K+ V G+  +  T  +V  A + +  L  GK +HS+ ++   +   
Sbjct: 328 VKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDRE 387

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V   N+L+DMYSKCG L  + RVF+ M E+TV+SW +M+ GY + G+    ++LF+ M+ 
Sbjct: 388 VRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKS 447

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V PD     ++L+ C+  G    G  + H+ +  ++  E        + DM  + G 
Sbjct: 448 RG-VVPDVYAVTSILNACAINGNLKSG-KIVHDYIR-ENNLETNSFVSNALTDMYAKCGS 504

Query: 415 VGEALEFIKNM 425
           + +A +   +M
Sbjct: 505 MKDAHDVFSHM 515



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 161/305 (52%), Gaps = 6/305 (1%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           S+G + K   EM + G+        ++LNAC     L+ G+ VH ++ +       ++  
Sbjct: 435 SDGAI-KLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L   Y KC  + DA  +F  M++++V+SW  MI  Y++ +   EAL LF  M R +++P
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKP 552

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           +  T A +L +CA     + G++IH   +++ +    YV ++++DMY K G +  AR +F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +P +D+VS T +I+GY   G   EAI  F ++++ G+  + V++ S+L A S    L 
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLD 672

Query: 278 HGKQVHSHVLRFEIPSYVVLQN--SLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLV 334
            G ++  ++++ E      L++   ++D+ ++ G+L  + +    M  +     W A+L 
Sbjct: 673 EGWKIF-NIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLC 731

Query: 335 GYSKH 339
           G   H
Sbjct: 732 GCRIH 736


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/620 (39%), Positives = 372/620 (60%), Gaps = 37/620 (5%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M +LGL      +  LL +C   +T   GQ++H  ++K  +   +Y+ T LI  Y +   
Sbjct: 55  MVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWR 114

Query: 109 LSDA-------------------------------RKMFDEMRERNVVSWTAMISAYSQK 137
           L DA                               +K+FDE+  ++VVSW AMIS Y++ 
Sbjct: 115 LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EAL LF  M++ +  P+E T+ TVL++CA +   ELG+Q+HS +    F+S++ + 
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV 234

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D+Y+K G +  A G+F+ L  +DV+S   +I GY  + L +EA+ LF+++   G  
Sbjct: 235 NALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 294

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTYSR 315
            N VT  SVL A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG +  + 
Sbjct: 295 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 354

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VF++M  +++ SWNAM+ G++ HG      +LF+ MR+   ++PD +T++ +LS CSH 
Sbjct: 355 QVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IEPDDITFVGLLSACSHS 413

Query: 376 GMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GM D G  +F  +  D K    P++EHYGC++D+LG +G   EA E I  M  EP   I 
Sbjct: 414 GMLDLGRHIFRSMTQDYK--MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 471

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            SLL AC++H NV++ E   Q L++IEPEN  +Y++LSN+YASAGRWEDV R+R L+  K
Sbjct: 472 CSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGK 531

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K PG S IE+D ++  F   D+ HP   E+   ++++ V  +EAG+VPD S VL ++
Sbjct: 532 CMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEM 591

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y R++  
Sbjct: 592 EEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVA 651

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD+ RFHH  +G CSC DYW
Sbjct: 652 RDRTRFHHFRDGVCSCNDYW 671



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 35/386 (9%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F+ ++E N + W  MI  ++  +    +L L++ M+     PN +TF  +L SCA 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +  F  G+QIH  ++K  F+  +YV +SL+ MY +  R+ +A  VF+    RDVVS TA+
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 232 ISGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------------ 261
           I+GYA  G    A +LF ++ V+       MIS Y                         
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 262 -TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            TY +VL+A +   ++  G+QVHS V      S + + N+LID+YSKCG +  +  +F  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           +S + VISWN ++ GY+   + +E + LF  M    +  P+ VT L+VL  C+H G  D 
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSVLPACAHLGAIDI 315

Query: 381 GLAVFHEIVDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
           G  + H  +D +  G          ++DM  + G +  A +   +M  +  ++    + G
Sbjct: 316 GRWI-HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 440 -ACRVHYNVDIGEFVGQRLMEIEPEN 464
            A     +     F   R + IEP++
Sbjct: 375 FAMHGRADASFDLFSRMRKIGIEPDD 400


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/657 (37%), Positives = 368/657 (56%), Gaps = 68/657 (10%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  ++M   GL         +L++C        G++VH+ +IK      V +   ++  Y
Sbjct: 149 KTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMY 208

Query: 104 NKCECLSDAR-------------------------------KMFDEMRERNVVSWTAMIS 132
            KC     AR                                MF+ M ER++VSW A+I+
Sbjct: 209 GKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIA 268

Query: 133 AYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            Y+Q      AL  F RML  S  EP+EFT  +VL++CA     ++GKQ+HS I+++   
Sbjct: 269 GYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 328

Query: 192 SHIYVGSSLLDMYAKAGRIH---------------------------------EARGVFE 218
               + ++L+  YAK+G +                                  +AR VF+
Sbjct: 329 YSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFD 388

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +  RDV++ TA+I GY Q G ++EA+ELFR +   G   N  T A+VL+A + LA LG+
Sbjct: 389 VMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGY 448

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYS 337
           GKQ+H   +R      V + N++I +Y++ GS+  +RRVFD +  R   ++W +M+V  +
Sbjct: 449 GKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALA 508

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +HG+G + + LF  M     VKPD VTY+ V S C+H G  D+G   + ++++ + G  P
Sbjct: 509 QHGLGEQAIVLFEEMLRVG-VKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLN-EHGIVP 566

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           E+ HY C+VD+L RAG + EA EFI+ MP  P   + GSLL ACRV  N D+ E   ++L
Sbjct: 567 EMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKL 626

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           + I+P+N+G Y  L+N+Y++ GRW D  R+ +L K+KAV K+ G SW  +   +H F A 
Sbjct: 627 LSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGAD 686

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D  HP R+ +  K  ++  + K+AG+VPD++ VL+DVD+E KE++L  HSEKLA+ FGLI
Sbjct: 687 DVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLI 746

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TPE   +R++KNLR+C DCH   KF+SKV  R++ +RD  RFHH  +G CSC DYW
Sbjct: 747 STPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 172/342 (50%), Gaps = 41/342 (11%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           R   +    L+  Y K   L+DAR +F +M ER+ VSWT M+   ++    ++A+  F+ 
Sbjct: 94  RRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLD 153

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M+     P++F    VL+SCA      +G+++HS +IK    S + V +S+L MY K G 
Sbjct: 154 MVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGD 213

Query: 210 IHEARGV-------------------------------FECLPERDVVSCTAIISGYAQL 238
              AR V                               FE + ER +VS  AII+GY Q 
Sbjct: 214 AETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQN 273

Query: 239 GLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           GLD+ A++ F R L    M  +  T  SVL+A + L  L  GKQ+HS++LR  +P    +
Sbjct: 274 GLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQI 333

Query: 298 QNSLIDMYSKCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            N+LI  Y+K GS+  +RR+ D   +++  VIS+ A+L GY K G  ++  E+F++M   
Sbjct: 334 MNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR 393

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
                D + + A++ G    G  D  + +F  ++  + G EP
Sbjct: 394 -----DVIAWTAMIVGYEQNGQNDEAMELFRSMI--RSGPEP 428



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 104/230 (45%), Gaps = 25/230 (10%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG----SLTYSRRVFDNM--SERTVISWNAM 332
           G+ +H+H ++  +     L N+L+  Y++ G        +RR+FD++  + R   +WN++
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           L  Y+K G   +   +F  M E      D+V++  ++ G +  G     +  F ++V   
Sbjct: 104 LSMYAKSGRLADARVVFAQMPER-----DAVSWTVMVVGLNRAGRFWDAVKTFLDMVG-- 156

Query: 393 DGFEPEIEHYGCVVDMLG--RAGRVGEAL-EFIKNMPFEPTAAILGSLL---GACRVHYN 446
           +G  P       V+       A  +G  +  F+  +       +  S+L   G C    +
Sbjct: 157 EGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCG---D 213

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            +    V +R M++  E++ N ++  +LY   GR +    + E M+E+++
Sbjct: 214 AETARAVFER-MKVRSESSWNAMV--SLYTHQGRMDLALSMFENMEERSI 260


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 358/591 (60%), Gaps = 2/591 (0%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            K   +M   G+E     Y ++L  C + R +  G+++H  ++KT ++  VY+ + LI  Y
Sbjct: 459  KIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 518

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
             K   L  A K+F  ++E++VVSWTAMI+ Y+Q     EALNLF  M       +   FA
Sbjct: 519  AKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFA 578

Query: 164  TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            + +++CAG      G+QIH+    S +   + VG++L+ +YA+ G++ +A   F+ +  +
Sbjct: 579  SAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK 638

Query: 224  DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            D +S  ++ISG+AQ G  EEA+ LF ++   G   N  T+   ++A + +A +  GKQ+H
Sbjct: 639  DNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIH 698

Query: 284  SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            + +++    S   + N LI +Y+KCG++  + R F  M E+  ISWNAML GYS+HG G 
Sbjct: 699  AMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGF 758

Query: 344  EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
            + + LF  M++   V P+ VT++ VLS CSH G+ D G+  F  + +   G  P+ EHY 
Sbjct: 759  KALSLFEDMKQLG-VLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVH-GLVPKPEHYA 816

Query: 404  CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
            CVVD+LGR+G +  A  F++ MP +P A +  +LL AC VH N+DIGEF    L+E+EP+
Sbjct: 817  CVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPK 876

Query: 464  NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
            ++  YV+LSN+YA  G+W    R R++MK++ V K+PGRSWIE++  +H F A D+ HP 
Sbjct: 877  DSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPN 936

Query: 524  REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
             +++   ++ L+    E GY+P  + +L D +  QK    + HSEKLA+ FGL+      
Sbjct: 937  VDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSST 996

Query: 584  PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PI V KNLR+C DCHN+ K+VSK+  R + +RD  RFHH   G CSC DYW
Sbjct: 997  PIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 197/348 (56%), Gaps = 3/348 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++HA  I   Y   +++   LI  Y K   L+ A+K+FD +++R+ VSW AM+S  SQ 
Sbjct: 190 EKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQS 249

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EA+ LF +M  S   P  + F++VL++C     +++G+Q+H L++K  F    YV 
Sbjct: 250 GCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC 309

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+ +Y++ G    A  VF  + +RD VS  ++ISG +Q G  ++A+ELF+K+ ++ + 
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            + VT AS+L+A S + AL  GKQ HS+ ++  + S ++L+ +L+D+Y KC  +  +   
Sbjct: 370 PDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF 429

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F +     V+ WN MLV Y       E  ++F  M+ E  ++P+  TY ++L  CS    
Sbjct: 430 FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEG-IEPNQFTYPSILRTCSSLRA 488

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            D G  +  +++  K GF+  +     ++DM  + G++  AL+  + +
Sbjct: 489 VDLGEQIHTQVL--KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 201/364 (55%), Gaps = 3/364 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC +   L  G++ H++ IK      + L   L+  Y KC  +  A + F      
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV W  M+ AY    +  E+  +F +M     EPN+FT+ ++L +C+     +LG+QIH
Sbjct: 437 NVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIH 496

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++K+ F+ ++YV S L+DMYAK G++  A  +F  L E+DVVS TA+I+GYAQ     
Sbjct: 497 TQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFA 556

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LF+++Q +G+ S+ + +AS ++A +G+ AL  G+Q+H+          + + N+L+
Sbjct: 557 EALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALV 616

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            +Y++CG +  +   FD +  +  ISWN+++ G+++ G   E + LF+ M +  + + +S
Sbjct: 617 SLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ-EINS 675

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+   +S  ++      G  +   I+  K G + E E    ++ +  + G + +A    
Sbjct: 676 FTFGPAVSAAANVANVKLGKQIHAMII--KTGHDSETEVSNVLITLYAKCGNIDDAERQF 733

Query: 423 KNMP 426
             MP
Sbjct: 734 FEMP 737



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 198/371 (53%), Gaps = 3/371 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M T G+      + ++L+AC      + G+++H  ++K  +    Y+   L+  Y++  
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG 320

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
               A ++F+ M +R+ VS+ ++IS  SQ+ +S +AL LF +M     +P+  T A++L+
Sbjct: 321 NFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS 380

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+      +GKQ HS  IK+   S I +  +LLD+Y K   I  A   F      +VV 
Sbjct: 381 ACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVL 440

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++  Y  L    E+ ++F ++Q+EG+  N  TY S+L   S L A+  G+Q+H+ VL
Sbjct: 441 WNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVL 500

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +      V + + LIDMY+K G L ++ ++F  + E+ V+SW AM+ GY++H    E + 
Sbjct: 501 KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALN 560

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M+++  +  D++ + + +S C+     ++G  +  +   C  G+  ++     +V 
Sbjct: 561 LFKEMQDQG-IHSDNIGFASAISACAGIQALNQGQQIHAQA--CVSGYSDDLSVGNALVS 617

Query: 408 MLGRAGRVGEA 418
           +  R G+V +A
Sbjct: 618 LYARCGKVRDA 628



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 238/497 (47%), Gaps = 48/497 (9%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+    + Y  LL+ C++      G ++H  ++K  +   V L  RL+  Y     
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A  +FDEM  R +  W  ++  +     +   L LF RML+   +P+E T+A VL  
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 169 CAGA-FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C G    F   ++IH+  I   +E+ ++V + L+D+Y K G ++ A+ VF+ L +RD VS
Sbjct: 179 CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVS 238

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A++SG +Q G +EEA+ LF ++   G+      ++SVL+A + +     G+Q+H  VL
Sbjct: 239 WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +  F + +YV   N+L+ +YS+ G+   + +VF+ M +R  +S+N+++ G S+ G   + 
Sbjct: 299 KQGFSLETYVC--NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +ELF  M  +  +KPD VT  ++LS CS  G    G   FH     K G   +I   G +
Sbjct: 357 LELFKKMCLDC-LKPDCVTVASLLSACSSVGALLVG-KQFHSYA-IKAGMSSDIILEGAL 413

Query: 406 VDMLGRAGRVGEALEF---------------------IKNMP-------------FEPTA 431
           +D+  +   +  A EF                     + N+               EP  
Sbjct: 414 LDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQ 473

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVREL 490
               S+L  C     VD+GE +  ++++   + N     +L ++YA  G+ +   ++   
Sbjct: 474 FTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRR 533

Query: 491 MKEKAVTKDPGRSWIEL 507
           +KEK V      SW  +
Sbjct: 534 LKEKDVV-----SWTAM 545



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 150/360 (41%), Gaps = 38/360 (10%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
            F +  E N    TA+  AYS        +N    M       N  T+  +L  C  +  
Sbjct: 28  FFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW 83

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           F  G ++H  I+K  F + + +   L+D+Y   G +  A  VF+ +P R +     ++  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPS 293
           +    +    + LFR++  E +  +  TYA VL    G     H  +++H+  +     +
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYEN 203

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            + + N LID+Y K G L  +++VFD + +R  +SW AML G S+ G   E V LF  M 
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH 263

Query: 354 EENKVKPDSVTYLAVLSGCS-----------HGGMEDRGLAV--------------FHEI 388
               V P    + +VLS C+           HG +  +G ++                  
Sbjct: 264 TSG-VYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNF 322

Query: 389 VDCKDGFEPEIEH----YGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGAC 441
           +  +  F   ++     Y  ++  L + G   +ALE  K M  +   P    + SLL AC
Sbjct: 323 IPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/661 (37%), Positives = 364/661 (55%), Gaps = 68/661 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  K  ++M T GL         +L++C        G++VH+ ++K      V +   +
Sbjct: 144 GEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSV 203

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMIS--------------------------- 132
           +  Y KC     AR +F+ M ER+V SW AM+S                           
Sbjct: 204 LNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWN 263

Query: 133 ----AYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
                Y+Q   + +AL  F RML   T  P+EFT  +VL++CA      +GKQ+H+ I++
Sbjct: 264 AVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILR 323

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGV------------------------------- 216
           S       V ++L+ MYAK+G +  ARGV                               
Sbjct: 324 SRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAR 383

Query: 217 --FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
             F+ +  RDVV+ TA+I GY Q G ++EA+ELFR +   G   N  T A+VL+  + LA
Sbjct: 384 EMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLA 443

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAML 333
            L +GKQ+H   +R        + NS++ MY++ GSL ++RRVFD +  R   ++W +M+
Sbjct: 444 CLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMI 503

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           V  ++HG+G + V LF  M     VKPD +T++ VLS C+H G  D G   F ++ D K 
Sbjct: 504 VALAQHGLGEDAVGLFEEMLRVG-VKPDRITFVGVLSACTHVGFVDEGKRYFQQLQD-KH 561

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G  PE+ HY C+VD+L RAG   EA EFI+ MP EP A   GSLL ACRVH N D+ E  
Sbjct: 562 GIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELA 621

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L+ I+P N+G Y  LSN+Y++ GRW D  ++ +  K+K+V K+ G SW  +   +H 
Sbjct: 622 AEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHV 681

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D  HP R+ +     ++    K+AG+VPD+  VL+DVD+E KE++L  HSEKLA+ 
Sbjct: 682 FGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIA 741

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+ TPE   +R++KNLR+C DCH   KF+SKV  R++ LRD  RFHH  +G CSC DY
Sbjct: 742 FGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDY 801

Query: 634 W 634
           W
Sbjct: 802 W 802



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 138/259 (53%), Gaps = 33/259 (12%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           + +++  +SLL +YAK+GR+ +AR VF  +PERD VS T ++ G  ++G   EAI++F  
Sbjct: 93  QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +  +G+     T  +VL++ +   A G G++VHS V++  + S V + NS+++MY KCG 
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 311 LTYSRRV-------------------------------FDNMSERTVISWNAMLVGYSKH 339
              +R V                               F+NM +RT++SWNA++ GY+++
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G+  + +  F+ M   + + PD  T  +VLS C++ GM   G  V   I+  +  +  ++
Sbjct: 273 GLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQV 332

Query: 400 EHYGCVVDMLGRAGRVGEA 418
            +   ++ M  ++G V  A
Sbjct: 333 TN--ALISMYAKSGSVENA 349



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 43/189 (22%)

Query: 277 GHGKQVHSHVLRF-----------------------------------EIPSY---VVLQ 298
           G G+ +H+  ++                                    EIP+    V   
Sbjct: 40  GAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTW 99

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+ +Y+K G L  +R VF  M ER  +SW  M+VG ++ G   E +++F  M  +  +
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDG-L 158

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            P   T   VLS C+    E RG+    H  V  K G    +     V++M G+ G    
Sbjct: 159 SPTQFTLTNVLSSCA--ATEARGVGRKVHSFV-VKLGLSSCVPVANSVLNMYGKCGDAET 215

Query: 418 ALEFIKNMP 426
           A    + MP
Sbjct: 216 ARAVFERMP 224


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 352/605 (58%), Gaps = 35/605 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC      + G+ +H  ++K      V++   L++ Y +C C+  AR +FD+M ER
Sbjct: 129 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 188

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSW+ MI + S+      AL L   M      P+E    +++   A      +GK +H
Sbjct: 189 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 248

Query: 183 SLIIKSNFESHIYV--GSSLLDMYAKAG-------------------------------R 209
           + +I+++   H+ V   ++LLDMYAK G                               R
Sbjct: 249 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 308

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + EAR +F+    RDV+  TA++S YAQ    ++A  LF +++  G+    VT  S+L+ 
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +   AL  GK VHS++ +  +    +L  +L+DMY+KCG +  + R+F     R +  W
Sbjct: 369 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 428

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           NA++ G++ HG G E +++F  M E   VKP+ +T++ +L  CSH G+   G  +F ++V
Sbjct: 429 NAIITGFAMHGYGEEALDIFAEM-ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 487

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
               G  P+IEHYGC+VD+LGRAG + EA E IK+MP +P   + G+L+ ACR+H N  +
Sbjct: 488 HTF-GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQL 546

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           GE    +L+EIEPEN G  V++SN+YA+A RW D   VR+ MK   + K+PG S IE++ 
Sbjct: 547 GELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNG 606

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F   D+SHP    ++  + ++  K  EAGYVPD S VL ++DEE+KE  L  HSEK
Sbjct: 607 TVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEK 666

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGLI T    PIR++KNLR+C DCH   K +SK+YGR + +RD+NRFHH  EG CS
Sbjct: 667 LAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCS 726

Query: 630 CGDYW 634
           CGDYW
Sbjct: 727 CGDYW 731



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 184/379 (48%), Gaps = 53/379 (13%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           TL   +++HAH+IKT +   +      I   +    LS + +            W  +I+
Sbjct: 55  TLEQTKQIHAHIIKTHFHHALQ-----IPLNDFPSGLSPSAQ------------WNFVIT 97

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           +Y+++     ALN++ ++ + D E + F   +VL +C      +LGK+IH  ++K   + 
Sbjct: 98  SYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDR 157

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            ++VG++L+ MY +   +  AR VF+ + ERDVVS + +I   ++    + A+EL R++ 
Sbjct: 158 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 217

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGS 310
              +  + V   S++   +  A +  GK +H++V+R     +  V    +L+DMY+KCG 
Sbjct: 218 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 277

Query: 311 LTYSRRVFDNMSERTVISWNAMLVG-------------------------------YSKH 339
           L  +R++F+ ++++TV+SW AM+ G                               Y++ 
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA 337

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
               +   LF+ MR    V+P  VT +++LS C+  G  D G  V H  +D K+  E + 
Sbjct: 338 NCIDQAFNLFDQMRTSG-VRPTKVTIVSLLSLCAVAGALDLGKWV-HSYID-KERVEVDC 394

Query: 400 EHYGCVVDMLGRAGRVGEA 418
                +VDM  + G +  A
Sbjct: 395 ILNTALVDMYAKCGDINAA 413


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/607 (38%), Positives = 373/607 (61%), Gaps = 8/607 (1%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  NG   +AL    EM   G++M F    ++L  C     +     +H ++IK   
Sbjct: 288 ISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL 347

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   LI  Y K   L DARK F +M   +VVSW ++I+AY Q      A   F++
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVK 407

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAG 208
           M  +  +P+  T  ++ +  A +   +  + +H  I++  +    + +G++++DMYAK G
Sbjct: 408 MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLG 467

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVL 267
            +  A  VFE +  +DV+S   +I+GYAQ GL  EAIE+++ ++  + +I N  T+ S+L
Sbjct: 468 LLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + + AL  G ++H  V++  +   V +   LID+Y KCG L  +  +F  + + + +
Sbjct: 528 PAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +WNA++  +  HG   + ++LF  M +E  VKPD VT++++LS CSH G  + G   F  
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEG-VKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           + +   G +P ++HYGC+VD+LGRAG +  A  FIK+MP +P A+I G+LLGACR+H N+
Sbjct: 647 MQEY--GIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNI 704

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G+F   RL E++ +N G YV+LSN+YA+ G+WE V +VR L +E+ + K PG S IE+
Sbjct: 705 ELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           ++ +  F+  ++SHP  +E+  +++ L+ K K  GY+PD S VL DV+E++KE +L  HS
Sbjct: 765 NRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 824

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ FG+I TP  +PIR+ KNLR+C DCHN  KF+S++  R++ +RD NRFHH  +G 
Sbjct: 825 ERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGI 884

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 885 CSCGDYW 891



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 229/442 (51%), Gaps = 10/442 (2%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           F  +  +L AC    TL  G+R+H    K  ++  V++   LI  Y++      AR +FD
Sbjct: 218 FYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           +M  R++ SW AMIS   Q  ++ +AL++   M     + N  T  ++L  C        
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
              IH  +IK   E  ++V ++L++MYAK G + +AR  F+ +   DVVS  +II+ Y Q
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVV 296
                 A   F K+Q+ G   + +T  S+ + ++      + + VH  ++ R  +   VV
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+++DMY+K G L  + +VF+ +  + VISWN ++ GY+++G+  E +E++ +M E  
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK 514

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           ++ P+  T++++L   +H G   +G+ +   ++  K     ++    C++D+ G+ GR+ 
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI--KTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLME-IEPENAGNYVILSNL 474
           +A+     +P E ++    +++    +H + +   +  G+ L E ++P++   +V L + 
Sbjct: 573 DAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV-TFVSLLSA 630

Query: 475 YASAGRWEDVTRVRELMKEKAV 496
            + +G  E+      LM+E  +
Sbjct: 631 CSHSGFVEEGKWCFRLMQEYGI 652



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 162/292 (55%), Gaps = 5/292 (1%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA ++       +++ TRL+  Y     +S +R  FD++ +++V +W +MISAY    H
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 140 SFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
             EA+  F ++L  S+  P+ +TF  VL +C        G++IH    K  F+ +++V +
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL+ MY++ G    AR +F+ +P RD+ S  A+ISG  Q G   +A+++  ++++EG+  
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N+VT  S+L     L  +     +H +V++  +   + + N+LI+MY+K G+L  +R+ F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
             M    V+SWN+++  Y ++         F  M + N  +PD +T +++ S
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLAS 425



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             K +H+L++ +     I++ + L+++YA  G +  +R  F+ +P++DV +  ++IS Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 237 QLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
             G   EAI  F +L +   I  ++ T+  VL A   L     G+++H    +      V
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNV 250

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +  SLI MYS+ G    +R +FD+M  R + SWNAM+ G  ++G   + +++ + MR E
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +K + VT +++L  C   G  D   A+   +   K G E ++     +++M  + G +
Sbjct: 311 G-IKMNFVTVVSILPVCPQLG--DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 416 GEALEFIKNM 425
            +A +  + M
Sbjct: 368 EDARKAFQQM 377


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/625 (38%), Positives = 374/625 (59%), Gaps = 37/625 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C      + GQ++H  ++K  +   +Y+ T LI  Y
Sbjct: 89  KLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMY 148

Query: 104 NKCECLSDARK-------------------------------MFDEMRERNVVSWTAMIS 132
            +   L DA+K                               MFDE+  ++VVSW A IS
Sbjct: 149 VQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXIS 208

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++  +  EAL LF +M++++  P+E T  TVL++CA +   ELG+Q+HS I    F  
Sbjct: 209 GYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGX 268

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G +  A G+F+ L  +DV+S   +I GY  + L +EA+ LF+ + 
Sbjct: 269 NLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDML 328

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L+A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG 
Sbjct: 329 RSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 388

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +++VFD+M  R++ SWNAM+ G++ HG      ++F+ MR+ N ++PD +T++ +LS
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK-NGIEPDDITFVGLLS 447

Query: 371 GCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH GM D G  +F  +  D K    P++EHYGC++D+ G +G   EA + I  M  EP
Sbjct: 448 ACSHSGMLDLGRHIFRSMTRDYK--LMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEP 505

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC++H NV++GE   Q L++IEPEN G+YV+LSN+YA+A RW +V + R 
Sbjct: 506 DGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRA 565

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+ +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S 
Sbjct: 566 LLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSE 625

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y 
Sbjct: 626 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 685

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD+ RFHH  +G CSC DYW
Sbjct: 686 REIIARDRTRFHHFRDGECSCNDYW 710



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 214/438 (48%), Gaps = 41/438 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEM 119
           +LL+ C   +TL+  + +HA MIKT      Y  ++L+   V     + L  A  +FD +
Sbjct: 7   SLLHXC---KTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +E  ++ W  M   ++  +    AL L++ M+     PN +TF  +L SCA +  F+ G+
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H  ++K  F+  +Y+ +SL+ MY + GR+ +A+ V +    RDVVS TA+I+GYA  G
Sbjct: 124 QLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRG 183

Query: 240 --------LDE-----------------------EAIELFRKLQVEGMISNYVTYASVLT 268
                    DE                       EA+ELF+K+    +  +  T  +VL+
Sbjct: 184 XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +   ++  G+QVHS +        + + N+LID+YSKCG L  +  +F  +S + VIS
Sbjct: 244 ACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVIS 303

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN ++ GY+   + +E + LF  M    + KP+ VT L++LS C+H G  D G  + H  
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTMLSILSACAHLGAIDIGRWI-HVY 361

Query: 389 VDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYN 446
           +D +  G          ++DM  + G +  A +   +M     ++    + G A     N
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 447 VDIGEFVGQRLMEIEPEN 464
                F   R   IEP++
Sbjct: 422 AAFDIFSRMRKNGIEPDD 439


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 368/631 (58%), Gaps = 30/631 (4%)

Query: 33   LKTLCSNGQLTKALIE---MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC- 88
            + +L  N +  +AL+    M   G+        ++L AC     LR G+ +H + ++   
Sbjct: 506  ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGD 565

Query: 89   YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                 ++ T L+  Y  C+     R +FD +  R V  W A+++ Y++     +AL LF+
Sbjct: 566  LIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFV 625

Query: 149  RML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
             M+  S+  PN  TFA+VL +C     F   + IH  I+K  F    YV ++L+DMY++ 
Sbjct: 626  EMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRM 685

Query: 208  GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-------------- 253
            GR+  ++ +F  + +RD+VS   +I+G    G  ++A+ L  ++Q               
Sbjct: 686  GRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYE 745

Query: 254  -EGMIS---NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
             +G +    N VT  +VL   + LAALG GK++H++ ++ ++   V + ++L+DMY+KCG
Sbjct: 746  DDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCG 805

Query: 310  SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM-----REENKVKPDSVT 364
             L  + RVFD M  R VI+WN +++ Y  HG G E +ELF +M          ++P+ VT
Sbjct: 806  CLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVT 865

Query: 365  YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            Y+A+ + CSH GM D GL +FH +     G EP  +HY C+VD+LGR+GRV EA E I  
Sbjct: 866  YIAIFAACSHSGMVDEGLHLFHTM-KASHGVEPRGDHYACLVDLLGRSGRVKEAYELINT 924

Query: 425  MPFEPTAA-ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            MP          SLLGACR+H +V+ GE   + L  +EP  A +YV++SN+Y+SAG W+ 
Sbjct: 925  MPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQ 984

Query: 484  VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
               VR+ MKE  V K+PG SWIE    +H F + D SHP  +EL   ++ LS + ++ GY
Sbjct: 985  ALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGY 1044

Query: 544  VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
            VPD+SCVL++VD+E+KE +L GHSE+LA+ FGL+ TP G  IRV KNLR+C DCH   K 
Sbjct: 1045 VPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKI 1104

Query: 604  VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+  R++ LRD  RFHH   GTCSCGDYW
Sbjct: 1105 ISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 7/359 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP--VYLRTRLIVFYNKCECLSDARKMFDE 118
           +  +L A      L  G+++HAH+ K  + PP  V +   L+  Y KC  L+ AR++FD+
Sbjct: 333 FPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDD 392

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA-FGFEL 177
           + +R+ VSW +MI+   +      +L+LF  ML  + +P  FT  +V  +C+    G  L
Sbjct: 393 IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRL 452

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GKQ+H+  ++ N +   Y  ++L+ MYA+ GR+++A+ +F     +D+VS   +IS  +Q
Sbjct: 453 GKQVHAYTLR-NGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVV 296
               EEA+     + V+G+  + VT ASVL A S L  L  G+++H + LR  ++     
Sbjct: 512 NDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF 571

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +  +L+DMY  C      R VFD +  RTV  WNA+L GY+++    + + LF  M  E+
Sbjct: 572 VGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISES 631

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           +  P++ T+ +VL  C    +      +   IV  K GF  +      ++DM  R GRV
Sbjct: 632 EFCPNATTFASVLPACVRCKVFSDKEGIHGYIV--KRGFGKDKYVQNALMDMYSRMGRV 688



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 134/260 (51%), Gaps = 7/260 (2%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +  R+   W  ++ + +  +   +A++ +  ML +   P+ F F  VL + A      LG
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 179 KQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           KQIH+ + K      S + V +SL++MY K G +  AR VF+ +P+RD VS  ++I+   
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALGHGKQVHSHVLRF-EIPSY 294
           +    E ++ LFR +  E +     T  SV  A S +   +  GKQVH++ LR  ++ +Y
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
               N+L+ MY++ G +  ++ +F     + ++SWN ++   S++    E +    LM  
Sbjct: 470 T--NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 355 ENKVKPDSVTYLAVLSGCSH 374
           +  V+PD VT  +VL  CS 
Sbjct: 528 DG-VRPDGVTLASVLPACSQ 546


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/538 (40%), Positives = 335/538 (62%), Gaps = 2/538 (0%)

Query: 97   TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             +L+ FY+    L DA  +FD M  R+ VSW+ M+  +++          F  ++R    
Sbjct: 774  NKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGAR 833

Query: 157  PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            P+ +T   V+ +C      ++G+ IH ++ K   +   +V ++L+DMY K   I +AR +
Sbjct: 834  PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFL 893

Query: 217  FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
            F+ + ERD+V+ T +I GYA+ G   E++ LF K++ EG++ + V   +V+ A + L A+
Sbjct: 894  FDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 953

Query: 277  GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
               + +  ++ R +    V+L  ++IDM++KCG +  +R +FD M E+ VISW+AM+  Y
Sbjct: 954  HKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY 1013

Query: 337  SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
              HG GR+ ++LF +M     + P+ +T +++L  CSH G+ + GL  F  + +      
Sbjct: 1014 GYHGQGRKALDLFPMMLRSG-ILPNKITLVSLLYACSHAGLVEEGLRFFSXMWE-DYSVR 1071

Query: 397  PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
             +++HY CVVD+LGRAGR+ EAL+ I +M  E    + G+ LGACR H +V + E     
Sbjct: 1072 XDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATS 1131

Query: 457  LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHA 516
            L+E++P+N G+Y++LSN+YA+AGRWEDV ++R+LM ++ + K PG +WIE+D   H F  
Sbjct: 1132 LLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSV 1191

Query: 517  SDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGL 576
             D +HP  +E+   +K L  K +  GYVPD + VL+DVDEE K  +L  HSEKLA+ FGL
Sbjct: 1192 GDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGL 1251

Query: 577  IGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            I TPE  PIR+IKNLR+C DCH F K VS + GR + +RD NRFHH  EG CSCGDYW
Sbjct: 1252 IATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 328/547 (59%), Gaps = 5/547 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           ++A VN R L   ++VHA          + +  +LI FY+    L DA  +FD M  R+ 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW+ M+  +++          F  ++R    P+ +T   V+ +C      ++G+ IH +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           + K   +   +V ++L+DMY K   I +AR +F+ + ERD+V+ T +I GYA+ G   E+
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF K++ EG++ + V   +V+ A + L A+   + +  ++ R +    V+L  ++IDM
Sbjct: 246 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 305

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +R +FD M E+ VISW+AM+  Y  HG GR+ ++LF +M     + PD +T
Sbjct: 306 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGML-PDKIT 364

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
             ++L  CSH G+ + GL  F  + +       +++HY CVVD+LGRAGR+ EAL+ IK+
Sbjct: 365 LASLLYACSHAGLVEEGLRFFSSMWE-DYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKS 423

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M  E    + G+ LGACR H +V + E     L+E++ +N G+YV+LSN+YA+AGRWEDV
Sbjct: 424 MTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDV 483

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            ++R+LM ++ + K PG +WIE+D   H F   D +HP  +E+   +K LS K +  GYV
Sbjct: 484 AKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYV 543

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR---ICVDCHNFA 601
           PD + VL+DVDEE K  +L  HSEKLA+ FGLI TPE  PIR+IKNLR   + ++ H  +
Sbjct: 544 PDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLREKKLYLELHVHS 603

Query: 602 KFVSKVY 608
             V+ VY
Sbjct: 604 SIVNLVY 610



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 147/278 (52%), Gaps = 2/278 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC + + L+ G+ +H  + K       ++   L+  Y KC  + DAR +FD+M+ER+
Sbjct: 166 VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD 225

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+WT MI  Y++   + E+L LF +M      P++    TV+ +CA        + I  
Sbjct: 226 LVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDD 285

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I +  F+  + +G++++DMYAK G +  AR +F+ + E++V+S +A+I+ Y   G   +
Sbjct: 286 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 345

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A++LF  +   GM+ + +T AS+L A S    +  G +  S +   + + + V     ++
Sbjct: 346 ALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVV 405

Query: 303 DMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           D+  + G L  + ++  +M+ E+    W A L     H
Sbjct: 406 DLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 147/282 (52%), Gaps = 10/282 (3%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            ++ AC + + L+ G+ +H  + K       ++   L+  Y KC  + DAR +FD+M ER+
Sbjct: 842  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERD 901

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            +V+WT MI  Y++  ++ E+L LF +M      P++    TV+ +CA        + I  
Sbjct: 902  LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 961

Query: 184  LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             I +  F+  + +G++++DM+AK G +  AR +F+ + E++V+S +A+I+ Y   G   +
Sbjct: 962  YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 1021

Query: 244  AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS-----HVLRFEIPSYVVLQ 298
            A++LF  +   G++ N +T  S+L A S    +  G +  S     + +R ++  Y    
Sbjct: 1022 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHY---- 1077

Query: 299  NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
              ++D+  + G L  + ++  +M+ E+    W A L     H
Sbjct: 1078 TCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +Q+H          ++ V + L+  Y+    + +A G+F+ +  RD VS + ++ G+A++
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G        FR+L   G   +  T   V+ A   L  L  G+ +H  V +F +     + 
Sbjct: 815 GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            +L+DMY KC  +  +R +FD M ER +++W  M+ GY++ G   E + LF+ MREE  V
Sbjct: 875 AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG-V 933

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD V  + V+  C+  G   +   +   I   +  F+ ++     ++DM  + G V  A
Sbjct: 934 VPDKVAMVTVVFACAKLGAMHKARTIDDYIQ--RKKFQLDVILGTAMIDMHAKCGCVESA 991

Query: 419 LEFIKNM 425
            E    M
Sbjct: 992 REIFDRM 998



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            T++ AC     +   + +  ++ +  ++  V L T +I  + KC C+  AR++FD M E+
Sbjct: 942  TVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK 1001

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            NV+SW+AMI+AY       +AL+LF  MLRS   PN+ T  ++L +C+ A   E G +  
Sbjct: 1002 NVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF 1061

Query: 183  SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEA 213
            S + +  +    +   + ++D+  +AGR+ EA
Sbjct: 1062 SXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEA 1093



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++ AC     +   + +  ++ +  ++  V L T +I  Y KC C+  AR++FD M E+
Sbjct: 266 TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK 325

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+SW+AMI+AY       +AL+LF  ML S   P++ T A++L +C+ A   E G +  
Sbjct: 326 NVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFF 385

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEA 213
           S + +  +  + +   + ++D+  +AGR+ EA
Sbjct: 386 SSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEA 417


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/516 (42%), Positives = 350/516 (67%), Gaps = 3/516 (0%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M  R++ SWT++I+ Y+Q     EAL L + MLR   +PN FTFA++L +   +    +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +QIH+L +K ++   +YVGS+LLDMYA+ GR+  A  VF+ L  ++ VS  A+I+G+A+ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  E  + +F ++Q  G  + + TY+SV +A++G+ AL  GK VH+H+++        + 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+++DMY+K GS+  +R+VFD++ ++ +++WN+ML  ++++G+GRE V  F  MR+   V
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG-V 239

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             + +T+L++L+ CSHGG+   G   F  + +     EPEI+HY  VVD+LGRAG + +A
Sbjct: 240 HLNQITFLSILTACSHGGLVKEGKQYFDMMKE--HNLEPEIDHYVTVVDLLGRAGLLNDA 297

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
           L FI  MP +PTAA+ G+LLG+CR+H N  IG+F    + E++P++ G  V+L N+YAS 
Sbjct: 298 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYAST 357

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G+W+   RVR++MK   V K+P  SW+E++  +H F A+D +HP  EE+  K +++S++ 
Sbjct: 358 GQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQI 417

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           ++AGYVP+   VL  VDE++++  L  HSEK+AL F LI  P GA IR++KN+RIC DCH
Sbjct: 418 RKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCH 477

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +  +++SKV+ R++ +RD NRFHH   G+CSCGDYW
Sbjct: 478 SAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 155/278 (55%), Gaps = 9/278 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL A     +   G+++HA  +K  +   VY+ + L+  Y +C  +  A  +FD++ 
Sbjct: 44  FASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE 103

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +N VSW A+I+ +++K      L +F  M R+  E   FT+++V ++ AG    E GK 
Sbjct: 104 SKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 163

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+ +IKS      +VG+++LDMYAK+G + +AR VF+ + ++D+V+  ++++ +AQ GL
Sbjct: 164 VHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGL 223

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ----VHSHVLRFEIPSYVV 296
             EA+  F +++  G+  N +T+ S+LTA S    +  GKQ    +  H L  EI  YV 
Sbjct: 224 GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYV- 282

Query: 297 LQNSLIDMYSKCGSLTYSRR-VFDNMSERTVISWNAML 333
              +++D+  + G L  +   +F    + T   W A+L
Sbjct: 283 ---TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 317



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 90/166 (54%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G E     Y ++ +A      L  G+ VHAHMIK+  R   ++   ++  Y K  
Sbjct: 132 EMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 191

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DARK+FD + ++++V+W +M++A++Q     EA+  F  M +     N+ TF ++LT
Sbjct: 192 SMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 251

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     + GKQ   ++ + N E  I    +++D+  +AG +++A
Sbjct: 252 ACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDA 297


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 355/603 (58%), Gaps = 18/603 (2%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGG---QRVHAHMIKT--CYRPPVY 94
             L  AL   A LGL        + L A ++   +R G    R  A+ +    C  P  Y
Sbjct: 51  ASLPAALKSCAALGL--------SALGASLHALAIRSGAFADRFTANALLNLYCKVPCSY 102

Query: 95  LRTRLIVFYN---KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           L +  +   +           RK+FDEM ER+VVSW  ++   +++    EAL    +M 
Sbjct: 103 LDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMC 162

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R    P+ FT +TVL   A     + G ++H    ++ F+S ++VGSSL+DMYA   R  
Sbjct: 163 REGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTD 222

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            +  VF+ LP RD +   ++++G AQ G  EEA+ +FR++   G+    VT++S++    
Sbjct: 223 YSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCG 282

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA+L  GKQ+H++V+       V + +SLIDMY KCG ++ +  +FD MS   V+SW A
Sbjct: 283 NLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTA 342

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M++GY+ HG  RE + LF  M E    KP+ +T+LAVL+ CSH G+ D+G   F  + + 
Sbjct: 343 MIMGYALHGPAREALVLFERM-ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSN- 400

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  P +EH+  + D LGRAG + EA  FI  M  +PTA++  +LL ACRVH N  + E
Sbjct: 401 HYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAE 460

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            V +++ME+EP + G++V+LSN+Y+++GRW +   +RE M++K + KDP  SWIE+   L
Sbjct: 461 EVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKL 520

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A DRSHP  + +   +   S +    G+VP+   V  D++EE K  VL GHSEKLA
Sbjct: 521 HVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLA 580

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FG+I TP G  IRV+KNLR+C+DCH   KF+SK+  R++ +RD NRFHH  +G CSCG
Sbjct: 581 IVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCG 640

Query: 632 DYW 634
           D+W
Sbjct: 641 DFW 643



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV---LTSCAGAFGFELGKQIHS 183
           W   I A + + H  +A++LF+RM R+   P     A++   L SCA      LG  +H+
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRM-RASAAPRSSVPASLPAALKSCAALGLSALGASLHA 74

Query: 184 LIIKSNFESHIYVGSSLLDMYAK-------------------AGRIHEARGVFECLPERD 224
           L I+S   +  +  ++LL++Y K                   +      R VF+ + ERD
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           VVS   ++ G A+ G   EA+   RK+  EG   +  T ++VL   +  A +  G +VH 
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
              R    S V + +SLIDMY+ C    YS +VFDN+  R  I WN++L G +++G   E
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEE 254

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + +F  M +   V+P  VT+ +++  C +      G  + H  V C  GFE  +     
Sbjct: 255 ALGIFRRMLQAG-VRPVPVTFSSLIPVCGNLASLRFGKQL-HAYVIC-GGFEDNVFISSS 311

Query: 405 VVDMLGRAGRVGEA 418
           ++DM  + G +  A
Sbjct: 312 LIDMYCKCGEISIA 325


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/587 (40%), Positives = 356/587 (60%), Gaps = 9/587 (1%)

Query: 55   EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
            +M+ EE       Y ++L  C+    L  G+++H+ +IKT ++   Y+ + LI  Y K  
Sbjct: 463  QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522

Query: 108  CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             L  A  +      ++VVSWT MI+ Y+Q     +AL  F +ML      +E      ++
Sbjct: 523  KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS 582

Query: 168  SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            +CAG    + G+QIH+    S F S +   ++L+ +Y+K G I EA   FE     D ++
Sbjct: 583  ACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA 642

Query: 228  CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              A++SG+ Q G +EEA+ +F ++  EG+ SN  T+ S + A S  A +  GKQVH+ + 
Sbjct: 643  WNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVIT 702

Query: 288  RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
            +    S   + N++I MY+KCGS++ +++ F  +S +  +SWNAM+  YSKHG G E ++
Sbjct: 703  KTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALD 762

Query: 348  LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
             F+ M   N V+P+ VT + VLS CSH G+ D+G+  F E ++ + G  P+ EHY CVVD
Sbjct: 763  SFDQMIHSN-VRPNHVTLVGVLSACSHIGLVDKGIEYF-ESMNTEYGLAPKPEHYVCVVD 820

Query: 408  MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
            ML RAG +  A +FI  MP EP A +  +LL AC VH N++IGEF    L+E+EPE++  
Sbjct: 821  MLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSAT 880

Query: 468  YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
            YV+LSNLYA   +W+     R+ MKEK V K+PG+SWIE+   +H+F+  D++HP+ +E+
Sbjct: 881  YVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 940

Query: 528  SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
                K L+ +  E GYV D   +L ++ +EQK+  +  HSEKLA++FGL+  P   PI V
Sbjct: 941  HEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINV 1000

Query: 588  IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +KNLR+C DCH++ KFVSKV  R++ +RD  RFHH   G CSC DYW
Sbjct: 1001 MKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 4/383 (1%)

Query: 37  CSNGQLTKALIEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C  G+    L +   L GLE       +L+ AC +  TL  GQ++HA+  K  +     +
Sbjct: 350 CGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKI 409

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A   F E    NVV W  M+ AY        +  +F +M   + 
Sbjct: 410 EGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 469

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN++T+ ++L +C      ELG+QIHS IIK++F+ + YV S L+DMYAK G++  A  
Sbjct: 470 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWD 529

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +      +DVVS T +I+GY Q   D++A+  FR++   G+ S+ V   + ++A +GL A
Sbjct: 530 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 589

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+Q+H+        S +  QN+L+ +YSKCG++  +   F+       I+WNA++ G
Sbjct: 590 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSG 649

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           + + G   E + +F  M  E  +  ++ T+ + +   S      +G  V H ++  K G+
Sbjct: 650 FQQSGNNEEALRVFARMNREG-IDSNNFTFGSAVKAASETANMKQGKQV-HAVI-TKTGY 706

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA 418
           + E E    ++ M  + G + +A
Sbjct: 707 DSETEVCNAIISMYAKCGSISDA 729



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 192/360 (53%), Gaps = 5/360 (1%)

Query: 64  LLNACVNQR-TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL  C+    +L  G+++H+ ++K  +     L  +L+ FY     L  A K+FDEM ER
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPER 132

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGKQI 181
            + +W  MI   + ++ S +   LF RM+  +  PNE TF+ VL +C  G+  F++ +QI
Sbjct: 133 TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQI 192

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ II         V + L+D+Y++ G +  AR VF+ L  +D  S  A+ISG ++   +
Sbjct: 193 HARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECE 252

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EAI LF  + V G++     ++SVL+A   + +L  G+Q+H  VL+    S   + N+L
Sbjct: 253 VEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 312

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + +Y   GSL  +  +F NMS+R  +++N ++ G S+ G G + +ELF  M+ +  ++PD
Sbjct: 313 VSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG-LEPD 371

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           S T  +++  CS  G    G  +       K GF    +  G ++++  +   +  AL +
Sbjct: 372 SNTLASLVVACSSDGTLFSGQQL--HAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 195/395 (49%), Gaps = 18/395 (4%)

Query: 61  YDTLLNACVNQRTLRGG-------QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           +  +L AC      RGG       +++HA +I         +   LI  Y++   +  AR
Sbjct: 172 FSGVLEAC------RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRAR 225

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++FD +  ++  SW AMIS  S+     EA+ LF  M      P  + F++VL++C    
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             E+G+Q+H L++K  F S  YV ++L+ +Y   G +  A  +F  + +RD V+   +I+
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLIN 345

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           G +Q G  E+A+ELF+++Q++G+  +  T AS++ A S    L  G+Q+H++  +    S
Sbjct: 346 GLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFAS 405

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
              ++ +L+++Y+KC  +  +   F       V+ WN MLV Y      R    +F  M+
Sbjct: 406 NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 465

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            E ++ P+  TY ++L  C   G  + G  +  +I+  K  F+        ++DM  + G
Sbjct: 466 IE-EIVPNQYTYPSILKTCIRLGDLELGEQIHSQII--KTSFQLNAYVCSVLIDMYAKLG 522

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           ++  A + +  + F     +  + + A    YN D
Sbjct: 523 KLDTAWDIL--IRFAGKDVVSWTTMIAGYTQYNFD 555



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 185/387 (47%), Gaps = 12/387 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+      + ++L+AC    +L  G+++H  ++K  +    Y+   L+  Y    
Sbjct: 261 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 320

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A  +F  M +R+ V++  +I+  SQ  +  +A+ LF RM     EP+  T A+++ 
Sbjct: 321 SLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVV 380

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+       G+Q+H+   K  F S+  +  +LL++YAK   I  A   F      +VV 
Sbjct: 381 ACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVL 440

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++  Y  L     +  +FR++Q+E ++ N  TY S+L     L  L  G+Q+HS ++
Sbjct: 441 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 500

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +  F++ +YV   + LIDMY+K G L  +  +    + + V+SW  M+ GY+++    + 
Sbjct: 501 KTSFQLNAYVC--SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 558

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +  F  M +   ++ D V     +S C+       G  +  +   C  GF  ++     +
Sbjct: 559 LTTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQA--CVSGFSSDLPFQNAL 615

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAA 432
           V +  + G + EA      + FE T A
Sbjct: 616 VTLYSKCGNIEEAY-----LAFEQTEA 637



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           +N +  +    M   G++     + + + A      ++ G++VHA + KT Y     +  
Sbjct: 655 NNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 714

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            +I  Y KC  +SDA+K F E+  +N VSW AMI+AYS+     EAL+ F +M+ S+  P
Sbjct: 715 AIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRP 774

Query: 158 NEFTFATVLTSCA 170
           N  T   VL++C+
Sbjct: 775 NHVTLVGVLSACS 787


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/619 (39%), Positives = 361/619 (58%), Gaps = 49/619 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +   L+ G++VH   ++      V++   L+  Y KC  +++A K+F+ ++++
Sbjct: 239 NILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK 298

Query: 123 NVVSWTAMISAYSQ-----------------------------------KAHSFEALNLF 147
           +VVSW AM++ YSQ                                   K H FEAL++F
Sbjct: 299 DVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-------NFESHIYVGSSL 200
            +M     EPN  T A++L+ CA       GKQ H+ +IK+       + E  + V + L
Sbjct: 359 RQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGL 418

Query: 201 LDMYAKAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDEEAIELFRKL--QVEGM 256
           +DMYAK      AR +F+ +  +D  VV+ T +I GYAQ G   +A++LF ++  Q   +
Sbjct: 419 IDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSL 478

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV-LQNSLIDMYSKCGSLTYSR 315
             N  T +  L A + L  L  G+Q+H++ LR E  S V+ + N LIDMYSK G +  +R
Sbjct: 479 KPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAAR 538

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VFDNM  R V+SW +++ GY  HG G E + LF+ M++      D +T+L VL  CSH 
Sbjct: 539 AVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLG-FAVDGITFLVVLYACSHS 597

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           GM D+G+  FH++V    G  P  EHY C+VD+LGRAGR+ EA+E IKNM  EPTA +  
Sbjct: 598 GMVDQGMIYFHDMVK-GFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWV 656

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LL A R+H N+++GE+   +L E+  EN G+Y +LSNLYA+A RW+DV R+R LMK   
Sbjct: 657 ALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTG 716

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG SWI+  +   TF   DRSHP  E++   +  L  + K+ GYVP  S  L+DVD
Sbjct: 717 IRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVD 776

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +E+K  +L  HSEKLA+ +G++ T  G PIR+ KNLRIC DCH+   ++S +   ++ LR
Sbjct: 777 DEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLR 836

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH  +G+CSC  YW
Sbjct: 837 DSSRFHHFKKGSCSCRSYW 855



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 222/432 (51%), Gaps = 54/432 (12%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG       +  +L AC    +LR G  VHA +        V++   ++  Y +C 
Sbjct: 117 QMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCG 176

Query: 108 CLSDARKMFDEMRER---NVVSWTAMISAYSQKAHSFEALNLFIRM---LRSDTEPNEFT 161
            L DA +MFDE+ ER   ++VSW ++++AY Q   S  AL +  RM         P+  T
Sbjct: 177 ALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAIT 236

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              +L +CA  F  + GKQ+H   +++     ++VG++L+ MYAK  +++EA  VFE + 
Sbjct: 237 LVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK 296

Query: 222 ERDVVSCTAIISGYAQLG------------------LDE-----------------EAIE 246
           ++DVVS  A+++GY+Q+G                  LD                  EA++
Sbjct: 297 KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALD 356

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-------FEIPSYVVLQN 299
           +FR++Q+ G+  N VT AS+L+  + + AL +GKQ H++V++        +    +++ N
Sbjct: 357 VFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416

Query: 300 SLIDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMGREVVELF-NLMREEN 356
            LIDMY+KC S   +R +FD++   ++ V++W  M+ GY++HG   + ++LF  + +++ 
Sbjct: 417 GLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKT 476

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRV 415
            +KP++ T    L  C+  G E R     H     ++  E E+ + G C++DM  ++G +
Sbjct: 477 SLKPNAFTLSCALMACARLG-ELRLGRQLHAYA-LRNENESEVLYVGNCLIDMYSKSGDI 534

Query: 416 GEALEFIKNMPF 427
             A     NM  
Sbjct: 535 DAARAVFDNMKL 546



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 159/305 (52%), Gaps = 11/305 (3%)

Query: 103 YNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
           Y +C   ++A  +   +      V  W A+I    +     + L  + +M R    P+ +
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TF  VL +C        G  +H+++  +   S++++ +S++ MY + G + +A  +F+ +
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 221 PER---DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS---NYVTYASVLTALSGLA 274
            ER   D+VS  +I++ Y Q G    A+ +  ++     +    + +T  ++L A + + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL HGKQVH   +R  +   V + N+L+ MY+KC  +  + +VF+ + ++ V+SWNAM+ 
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GYS+ G     + LF +M+EE+ +K D +T+ AV++G +  G     L VF ++     G
Sbjct: 309 GYSQIGSFDSALSLFKMMQEED-IKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ--LYG 365

Query: 395 FEPEI 399
            EP +
Sbjct: 366 LEPNV 370



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           T P      ++L  C      +L    H  I    F       S  +  Y + G   EA 
Sbjct: 26  TSPPTIPLISLLRQCKTLINAKLA---HQQIFVHGFTEMF---SYAVGAYIECGASAEAV 79

Query: 215 GVFE-CLPERDVV-SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            + +  +P    V    A+I    +LGL ++ +  + ++Q  G + ++ T+  VL A   
Sbjct: 80  SLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGE 139

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT---VISW 329
           + +L HG  VH+ V    + S V + NS++ MY +CG+L  + ++FD + ER    ++SW
Sbjct: 140 IPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSW 199

Query: 330 NAMLVGYSKHGMGREVVELFNLMREEN--KVKPDSVTYLAVLSGCS-----HGGMEDRGL 382
           N++L  Y + G  R  + +   M      K++PD++T + +L  C+       G +  G 
Sbjct: 200 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF 259

Query: 383 AVFHEIVD 390
           +V + +VD
Sbjct: 260 SVRNGLVD 267


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/526 (42%), Positives = 333/526 (63%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L   RK+FDEM E++VVSW  ++   ++     EAL L   M R   +P+ FT ++VL  
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPI 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A       G ++H    ++ F   ++VGSSL+DMYA   R   +  VF+ LP RD +  
Sbjct: 183 FAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILW 242

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            ++++G AQ G  +EA+ LFR++   G+    VT++S++ A   LA+L  GKQ+H++V+R
Sbjct: 243 NSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIR 302

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                 V + +SLIDMY KCG+++ +RR+FD +    ++SW AM++G++ HG  RE + L
Sbjct: 303 GGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVL 362

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F+ M E   +KP+ +T+LAVL+ CSH G+ D+G   F+ + D   G  P +EH+  + D 
Sbjct: 363 FDRM-ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSD-HYGIVPSLEHHAALADT 420

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR G++ EA  FI  M  +PTA++  +LL AC+VH N  + E V +++ ++EP + G++
Sbjct: 421 LGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSH 480

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           +ILSN Y+S+GRW +   +R+ M++K + K+P  SWIE+    H F A D+SHP  E + 
Sbjct: 481 IILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERII 540

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +   S +    GYVP+   V  D++EEQK  VL GHSEKLA+ FG+I TP G  IRV+
Sbjct: 541 DALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVM 600

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+CVDCH   KF+SK+ GR++ +RD NRFHH  +G CSCGD+W
Sbjct: 601 KNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 137/262 (52%), Gaps = 2/262 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           +R G  +H    +  +   V++ + LI  Y  C     + K+FD +  R+ + W +M++ 
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
            +Q     EAL LF RML S  +P   TF++++ +C       LGKQ+H+ +I+  F+ +
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGN 308

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           +++ SSL+DMY K G +  AR +F+ +   D+VS TA+I G+A  G   EA+ LF ++++
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMEL 368

Query: 254 EGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             +  N++T+ +VLTA S    +  G K  +S    + I   +    +L D   + G L 
Sbjct: 369 GNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLE 428

Query: 313 YSRRVFDNMSERTVIS-WNAML 333
            +      M  +   S W+ +L
Sbjct: 429 EAYNFISGMKIKPTASVWSTLL 450



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 21/311 (6%)

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT----VLTSCAGAFGFELGKQI 181
           SW   I   + +     A+ LF+RM  SD      +  T     L SCA      LG  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAK--------------AGRIHEARGVFECLPERDVVS 227
           H+L ++S   +  +  ++LL++Y K              A  +   R VF+ +PE+DVVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++ G A+ G   EA+ L R++  +G   +  T +SVL   +  A +  G ++H    
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R      V + +SLIDMY+ C    YS +VFDN+  R  I WN+ML G +++G   E + 
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALG 260

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M     +KP  VT+ +++  C +      G  +   ++  + GF+  +     ++D
Sbjct: 261 LFRRMLHSG-IKPMPVTFSSLIPACGNLASLLLGKQLHAYVI--RGGFDGNVFISSSLID 317

Query: 408 MLGRAGRVGEA 418
           M  + G V  A
Sbjct: 318 MYCKCGNVSIA 328



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 12/189 (6%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L     NG + +AL     M   G++     + +L+ AC N  +L  G+++HA++I+  +
Sbjct: 246 LAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGF 305

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V++ + LI  Y KC  +S AR++FD ++  ++VSWTAMI  ++    + EAL LF R
Sbjct: 306 DGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDR 365

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLI----IKSNFESHIYVGSSLLDMY 204
           M   + +PN  TF  VLT+C+ A   + G K  +S+     I  + E H    ++L D  
Sbjct: 366 MELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHH----AALADTL 421

Query: 205 AKAGRIHEA 213
            + G++ EA
Sbjct: 422 GRPGKLEEA 430


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 352/546 (64%), Gaps = 11/546 (2%)

Query: 97  TRLIVFYN-------KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           ++ +V YN       +C+ + +AR++F+ M +R+ ++WT M++ ++Q     EAL +F R
Sbjct: 203 SKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRR 262

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       +++TF ++LT+C      E GKQIH+ II++ ++ +++VGS+L+DMY+K   
Sbjct: 263 MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRS 322

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  A  VF  +  ++++S TA+I GY Q G  EEA+ +F ++Q +G+  +  T  SV+++
Sbjct: 323 IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISS 382

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LA+L  G Q H   L   +  Y+ + N+L+ +Y KCGS+  + R+FD MS    +SW
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A++ GY++ G  +E ++LF  M  +  VKPD VT++ VLS CS  G  ++G + FH + 
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKG-VKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQ 501

Query: 390 DCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             KD G  P  +HY C++D+  R+G++ EA EFIK MP  P A   G+LL ACR+  +++
Sbjct: 502 --KDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           IG++  + L+EI+P+N  +YV+L +++A+ G+W +V ++R  M+++ V K+PG SWI+  
Sbjct: 560 IGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F A D+SHP  + +  K++ L+ K  E GY PD+S VL+DV +  K  ++  HSE
Sbjct: 620 NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSE 679

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FGLI  P+  PIR++KNLR+CVDCHN  KF+SK+ GR + +RD  RFH   +G C
Sbjct: 680 KLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVC 739

Query: 629 SCGDYW 634
           SCGD+W
Sbjct: 740 SCGDFW 745



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 198/370 (53%), Gaps = 36/370 (9%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P ++    L+        LSD   +F  M +R++VS+ A+I+ +S      +A+ +++ +
Sbjct: 70  PNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLAL 129

Query: 151 LRSDTE--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-- 206
           L++D+   P+  T +T++ + +      LGKQ H  I++  F ++ +VGS L+DMYAK  
Sbjct: 130 LQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMS 189

Query: 207 ----AGR-------------------------IHEARGVFECLPERDVVSCTAIISGYAQ 237
               A R                         + EAR +FE + +RD ++ T +++G+ Q
Sbjct: 190 LVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQ 249

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL+ EA+E+FR+++ +G+  +  T+ S+LTA   L+AL  GKQ+H++++R      V +
Sbjct: 250 NGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFV 309

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            ++L+DMYSKC S+  +  VF  M+ + +ISW A++VGY ++G   E V +F+ M+ +  
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG- 368

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD  T  +V+S C++    + G A FH +     G    I     +V + G+ G + +
Sbjct: 369 IDPDDYTLGSVISSCANLASLEEG-AQFHCLA-LVSGLMHYITVSNALVTLYGKCGSIED 426

Query: 418 ALEFIKNMPF 427
           A      M F
Sbjct: 427 AHRLFDEMSF 436



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 150/287 (52%), Gaps = 9/287 (3%)

Query: 56  MRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MRF+        + ++L AC     L  G+++HA++I+T Y   V++ + L+  Y+KC  
Sbjct: 263 MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRS 322

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  A  +F  M  +N++SWTA+I  Y Q   S EA+ +F  M R   +P+++T  +V++S
Sbjct: 323 IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISS 382

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA     E G Q H L + S    +I V ++L+ +Y K G I +A  +F+ +   D VS 
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHVL 287
           TA++SGYAQ G  +E I+LF K+  +G+  + VT+  VL+A S    +  G+   HS   
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
              I         +ID+YS+ G L  +      M      I W  +L
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEA 213
           + P    +A +L++ A       G  +H +I+++       Y+ + LL  Y KAGR   A
Sbjct: 2   SRPLSSQYAALLSAAARTEPHVAGA-LHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARA 60

Query: 214 RGVFECLP-------------------------------ERDVVSCTAIISGYAQLGLDE 242
           R VF+ +P                               +RD+VS  A+I+G++  G   
Sbjct: 61  RRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHA 120

Query: 243 EAIELFRK-LQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           +A+ ++   LQ +  +  + +T ++++ A S L     GKQ H  +LR    +   + + 
Sbjct: 121 QAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSP 180

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+K   +  ++R FD +  + V+ +N M+ G  +  M  E   LF +M +      
Sbjct: 181 LVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDR----- 235

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           DS+T+  +++G +  G+E   L +F  +
Sbjct: 236 DSITWTTMVTGFTQNGLESEALEIFRRM 263



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS  +  +   EM   G++       +++++C N  +L  G + H   + +     + + 
Sbjct: 353 CSE-EAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DA ++FDEM   + VSWTA++S Y+Q   + E ++LF +ML    +
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVK 471

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN----FESHIYVGSSLLDMYAKAGRIHE 212
           P+  TF  VL++C+ A   E G+     + K +     + H    + ++D+Y+++G++ E
Sbjct: 472 PDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHY---TCMIDLYSRSGKLKE 528

Query: 213 ARGVFECLP 221
           A    + +P
Sbjct: 529 AEEFIKQMP 537


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/618 (39%), Positives = 357/618 (57%), Gaps = 33/618 (5%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVY------------ 94
           M   G++     +  L  +C   +    G+++HAH +K    + P V+            
Sbjct: 122 MLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGE 181

Query: 95  ------------LR-----TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
                       LR     T LI  Y    CL DAR++FDE+  ++VVSW AMIS Y Q 
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EA+  F  M  ++  PN+ T   VL++C      ELGK I S +  + F S++ + 
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+DMY K G    AR +F+ + E+DV+S   +I GY+ L L EEA+ LF  +    + 
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            N VT+  +L A + L AL  GK VH+++ +     S   L  SLIDMY+KCG +  + R
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF +M  R + SWNAML G++ HG     + LF+ M  +   +PD +T++ VLS C+  G
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + D G   F  ++    G  P+++HYGC++D+L RA +  EA   +KNM  EP  AI GS
Sbjct: 482 LVDLGHQYFRSMIQ-DYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGS 540

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL AC+ H  V+ GE+V +RL ++EPENAG +V+LSN+YA AGRW+DV R+R  + +K +
Sbjct: 541 LLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGM 600

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K PG + IE+D  +H F   D+ HP    +   + ++    +E G+VP+ S VLYD+DE
Sbjct: 601 KKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDE 660

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E KE  L  HSEKLA++FGLI T  G  IR++KNLR+C +CH+  K +SK++ R++  RD
Sbjct: 661 EWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 720

Query: 617 KNRFHHIVEGTCSCGDYW 634
           +NRFHH  +G CSC D W
Sbjct: 721 RNRFHHFKDGFCSCNDCW 738



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 197/401 (49%), Gaps = 41/401 (10%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDE 118
           Y  LL  C N  T +   ++H+ +IKT     V+++++LI F   +    LS A  +F+E
Sbjct: 31  YLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87

Query: 119 MRER---NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
            ++    NV  W ++I  YS  +    +L+LF RML    +PN  TF  +  SC  A   
Sbjct: 88  NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
             GKQ+H+  +K     + +V +S++ MYA  G +  AR VF+    RD VS TA+I+GY
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 236 AQLGLDEEAIELFRKLQVE------GMISNYVTY---------------ASVL----TAL 270
              G  ++A  LF ++ V+       MIS YV                 A+VL    T +
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267

Query: 271 SGLAALGH------GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
             L+A GH      GK + S V      S + L N+LIDMY KCG    +R +FD + E+
Sbjct: 268 VVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEK 327

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            VISWN M+ GYS   +  E + LF +M   N VKP+ VT+L +L  C+  G  D G  V
Sbjct: 328 DVISWNTMIGGYSYLSLYEEALALFEVMLRSN-VKPNDVTFLGILHACACLGALDLGKWV 386

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            H  +D           +  ++DM  + G +  A    ++M
Sbjct: 387 -HAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM 426


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/635 (37%), Positives = 372/635 (58%), Gaps = 11/635 (1%)

Query: 8   SRAFSSLTFTQQ---QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE---Y 61
           S +F  +TF +Q    L  P   P    ++    N     AL+  + + L     +   +
Sbjct: 63  SSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EM 119
             LL AC     L+ G+ VHA + +  +   V+++  LI  Y KC  L  AR +F+   +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL 182

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ER +VSWTA++SAY+Q     EAL +F  M + D +P+     +VL +       + G+
Sbjct: 183 PERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGR 242

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH+ ++K   E    +  SL  MYAK G++  A+ +F+ +   +++   A+ISGYA+ G
Sbjct: 243 SIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EAI++F ++  + +  + ++  S ++A + + +L   + ++ +V R +    V + +
Sbjct: 303 YAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS 362

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDM++KCGS+  +R VFD   +R V+ W+AM+VGY  HG  RE + L+  M E   V 
Sbjct: 363 ALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM-ERGGVH 421

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT+L +L  C+H GM   G   F+ + D K    P+ +HY CV+D+LGRAG + +A 
Sbjct: 422 PNDVTFLGLLMACNHSGMVREGWWFFNLMADHK--INPQQQHYACVIDLLGRAGHLDQAY 479

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E IK MP +P   + G+LL AC+ H +V++GE+  Q+L  I+P N G+YV LSNLYA+A 
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W+ V  VR  MKEK + KD G SW+E+   L  F   D+SHP  EE+  +V+ +  + K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E G+V +    L+D+++E+ E+ L  HSE++A+ +GLI TP+G P+R+ KNLR CV+CH 
Sbjct: 600 EGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHA 659

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 660 ATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 208/368 (56%), Gaps = 9/368 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+++  ++  L+   ++HA ++    +   +L T+LI   +    ++ AR++FD++ 
Sbjct: 24  YASLIDSATHKAQLK---QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              +  W A+I  YS+  H  +AL ++  M  +   P+ FTF  +L +C+G    ++G+ 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC--LPERDVVSCTAIISGYAQL 238
           +H+ + +  F++ ++V + L+ +YAK  R+  AR VFE   LPER +VS TAI+S YAQ 
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+E+F  ++   +  ++V   SVL A + L  L  G+ +H+ V++  +     L 
Sbjct: 201 GEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL  MY+KCG +  ++ +FD M    +I WNAM+ GY+K+G  RE +++F+ M  ++ V
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-V 319

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV-GE 417
           +PD+++  + +S C+  G  ++  +++  +   +  +  ++     ++DM  + G V G 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYV--GRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 418 ALEFIKNM 425
            L F + +
Sbjct: 378 RLVFDRTL 385


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 351/577 (60%), Gaps = 1/577 (0%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           +  + ++L +CV   +LR G+++H  ++ +   P   L T+L+  Y  C  +  AR++FD
Sbjct: 62  YHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFD 121

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            M +RNV  W  +I AY+++     A+ L+  M+    EP+ FT+  VL +CA     E 
Sbjct: 122 GMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLET 181

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G+++H  +  + +   ++V + ++DMYAK G + +AR VF+ +  RD V   ++I+ Y Q
Sbjct: 182 GREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQ 241

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   EA+ L R +   G+     T  S ++A +  AAL  G+++H    R        L
Sbjct: 242 NGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKL 301

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           + SL+DMY+K G +  +R +F+ + +R ++SWNAM+ GY  HG   E + LFN M+ + +
Sbjct: 302 KTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQ 361

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V PD++T++ VLS C+HGGM +     F+ +V+     +P ++HY CV+D+LG  GR  E
Sbjct: 362 VTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYS-IKPTVQHYTCVIDVLGHTGRFEE 420

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + IK M  EP + I G+LL  C++H NV++GE   Q+L+E+EPE+AGNYV LSN+YA 
Sbjct: 421 AYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQ 480

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           +G+WE   RVR+LM  + + K    SWIEL    H F   D SHP  +E+  ++++L   
Sbjct: 481 SGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGL 540

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             +AGYVPD+  V ++VD+++K  ++  HSE+LA+ FGLI TP G  + V KNLR+C DC
Sbjct: 541 MSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDC 600

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S++  R++ +RD NR+HH V G CSC DYW
Sbjct: 601 HVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 3/294 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     Y  +L AC     L  G+ VH  +  T +   V++   ++  Y KC C
Sbjct: 154 MVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGC 213

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DAR +FD +  R+ V W +MI+AY Q     EAL L   M  +   P   T  + +++
Sbjct: 214 VDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSA 273

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A A     G+++H    +  F     + +SL+DMYAK+G +  AR +FE L +R++VS 
Sbjct: 274 AADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSW 333

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQ-VHSHV 286
            A+I GY   G  +EA+ LF K++ +  ++ + +T+  VL+A +    +   K+  +  V
Sbjct: 334 NAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMV 393

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
             + I   V     +ID+    G    +  +   MS E     W A+L G   H
Sbjct: 394 NAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH 447


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 377/601 (62%), Gaps = 11/601 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NGQ  +A      M   G +     + +++ +C + + L   + +H   +K+       +
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV 341

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
            T L+V   KC+ + DA  +F  M   ++VVSWTAMIS Y Q   + +A+NLF  M R  
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG 401

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            +PN FT++T+LT     F  E    IH+ +IK+N+E    VG++LLD + K G I +A 
Sbjct: 402 VKPNHFTYSTILTVQHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAV 457

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG-L 273
            VFE +  +DV++ +A+++GYAQ G  EEA ++F +L  EG+  N  T+ S++ A +   
Sbjct: 458 KVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPT 517

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           A++  GKQ H++ ++  + + + + +SL+ +Y+K G++  +  +F    ER ++SWN+M+
Sbjct: 518 ASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMI 577

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY++HG  ++ +E+F  M++ N ++ D++T++ V+S C+H G+  +G   F+ +++   
Sbjct: 578 SGYAQHGQAKKALEVFEEMQKRN-LEVDAITFIGVISACAHAGLVGKGQNYFNIMIN-DH 635

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
              P +EHY C++D+  RAG +G+A++ I  MPF P A +   +L A RVH N+++G+  
Sbjct: 636 HINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLA 695

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++++ +EP+++  YV+LSN+YA+AG W +   VR+LM ++ V K+PG SWIE+    ++
Sbjct: 696 AEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYS 755

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D SHP+ + + +K+ +L+ + ++ GY PD + V +D+++EQKE +L  HSE+LA+ 
Sbjct: 756 FLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIA 815

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI T    P++++KNLR+C DCH+F K VS V  R + +RD NRFHH   G CSCGDY
Sbjct: 816 FGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDY 875

Query: 634 W 634
           W
Sbjct: 876 W 876



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 166/281 (59%), Gaps = 6/281 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A+++FD+   R++     ++  YS+   + EAL+LF+ + RS   P+ +T + VL+ CAG
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +F   +G+Q+H   +K     H+ VG+SL+DMY K G + + R VF+ + +RDVVS  ++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++GY+    +++  ELF  +QVEG   +Y T ++V+ AL+   A+  G Q+H+ V++   
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            +  ++ NSLI M SK G L  +R VFDNM  +  +SWN+M+ G+  +G   E  E FN 
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           M+     KP   T+ +V+  C+   +++ GL     ++ CK
Sbjct: 295 MQLAG-AKPTHATFASVIKSCA--SLKELGLV---RVLHCK 329



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 168/308 (54%), Gaps = 2/308 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+ C        G++VH   +K      + +   L+  Y K   + D R++FDEM +R+
Sbjct: 108 VLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD 167

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSW ++++ YS    + +   LF  M      P+ +T +TV+ + A      +G QIH+
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L++K  FE+   V +SL+ M +K+G + +AR VF+ +  +D VS  ++I+G+   G D E
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLE 287

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A E F  +Q+ G    + T+ASV+ + + L  LG  + +H   L+  + +   +  +L+ 
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV 347

Query: 304 MYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             +KC  +  +  +F  M   ++V+SW AM+ GY ++G   + V LF+LMR E  VKP+ 
Sbjct: 348 ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG-VKPNH 406

Query: 363 VTYLAVLS 370
            TY  +L+
Sbjct: 407 FTYSTILT 414



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 174/336 (51%), Gaps = 6/336 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N Q+ +    M   G    +    T++ A  NQ  +  G ++HA ++K  +     +   
Sbjct: 184 NDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNS 243

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI   +K   L DAR +FD M  ++ VSW +MI+ +       EA   F  M  +  +P 
Sbjct: 244 LISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPT 303

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             TFA+V+ SCA      L + +H   +KS   ++  V ++L+    K   I +A  +F 
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFS 363

Query: 219 CLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
            +   + VVS TA+ISGY Q G  ++A+ LF  ++ EG+  N+ TY+++LT    +    
Sbjct: 364 LMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI-- 421

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
              ++H+ V++        +  +L+D + K G+++ + +VF+ +  + VI+W+AML GY+
Sbjct: 422 --SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYA 479

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + G   E  ++F+ +  E  +KP+  T+ ++++ C+
Sbjct: 480 QAGETEEAAKIFHQLTREG-IKPNEFTFCSIINACT 514


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 362/572 (63%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A V   ++  G+ +H   IKT      ++   L+  Y KC  + DAR  F+ +   
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+  + MIS Y+Q   + +A  LF+R++RS   PNE++ ++VL +C      + GKQIH
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +  IK   ES ++VG++L+D YAK   +  +  +F  L + + VS   I+ G++Q GL E
Sbjct: 388 NHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGE 447

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ +F ++Q   M    VTY+SVL A +  A++ H  Q+H  + +    +  V+ NSLI
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLI 507

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D Y+KCG +  + +VF ++ ER +ISWNA++ GY+ HG   + +ELF+ M + N V+ + 
Sbjct: 508 DTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSN-VESND 566

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++A+LS CS  G+ + GL++F + +    G +P +EHY C+V +LGRAGR+ +AL+FI
Sbjct: 567 ITFVALLSVCSSTGLVNHGLSLF-DSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            ++P  P+A +  +LL +C +H NV +G F  ++++EIEP++   YV+LSN+YA+AG  +
Sbjct: 626 GDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD 685

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  +R+ M+   V K PG SW+E+   +H F      HP    ++A ++ L++K    G
Sbjct: 686 QVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREG 745

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y+PD++ VL+DVD+EQK ++L  HSE+LAL +GL+ TP G PIR++KNLR C+DCH    
Sbjct: 746 YIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFT 805

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 806 VISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 190/352 (53%), Gaps = 5/352 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L GG  VH+   K  +    ++ + LI  Y+ C  +SDA  +F+ +  ++ V WTAM+S 
Sbjct: 180 LAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           YS+      A  +F +M  S  +PN F   +VL +        LGK IH   IK+  ++ 
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            +VG +LLDMYAK G I +AR  FE +P  DV+  + +IS YAQ   +E+A ELF +L  
Sbjct: 298 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 357

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             ++ N  + +SVL A + +  L  GKQ+H+H ++    S + + N+L+D Y+KC  +  
Sbjct: 358 SSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 417

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           S ++F ++ +   +SWN ++VG+S+ G+G E + +F  M +  ++    VTY +VL  C+
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM-QAAQMPCTQVTYSSVLRACA 476

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                 R     H  ++ K  F  +      ++D   + G + +AL+  +++
Sbjct: 477 STA-SIRHAGQIHCSIE-KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL 526



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 176/364 (48%), Gaps = 7/364 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           L  C+ +   RGG+ VH H+++     R  ++    L+  Y K   L+ AR++FD M ER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VS+  ++ A++Q+     A  LF R+     E N+F   T+L          L   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S   K   + + +VGS L+D Y+    + +A  VF  +  +D V  TA++S Y++    E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A  +F K++V G   N     SVL A   L ++  GK +H   ++    +   +  +L+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPD 361
           DMY+KCG +  +R  F+ +    VI  + M+  Y++     +  ELF  LMR  + V P+
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR--SSVLPN 363

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             +  +VL  C++    D G  + +  +  K G E ++     ++D   +   +  +L+ 
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAI--KIGHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 422 IKNM 425
             ++
Sbjct: 422 FSSL 425



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 1/154 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L AC +  ++R   ++H  + K+ +     +   LI  Y KC  + DA K+F  + 
Sbjct: 468 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 527

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER+++SW A+IS Y+    + +AL LF RM +S+ E N+ TF  +L+ C+       G  
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +  S+ I    +  +   + ++ +  +AGR+++A
Sbjct: 588 LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 621


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 374/616 (60%), Gaps = 37/616 (6%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M +LGL      +  L  +C   +  + G+++HA ++K      +++ T LI  Y + 
Sbjct: 67  VYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQN 126

Query: 107 ECLSDA-------------------------------RKMFDEMRERNVVSWTAMISAYS 135
             + DA                               +KMFDE+  ++VVSW AMIS Y+
Sbjct: 127 GIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYA 186

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +     EAL LF  M++ D +P+E T ATVL++C  +   ELG+QIHS I    F S++ 
Sbjct: 187 EIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLK 246

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           + ++L+D+Y+K G +  A G+FE L  +DV+S   +I GYA +   +EA+ +F+++   G
Sbjct: 247 LVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLG 306

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTY 313
              N VT  S+L A + L A+  G+ +H ++ +    I +   LQ SLIDMY+KCG++  
Sbjct: 307 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEA 366

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + +VFD +  +++ S NAM+ G++ HG      +L + M+++  ++PD +T++ +LS CS
Sbjct: 367 ANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDG-IEPDDITFVGLLSACS 425

Query: 374 HGGMEDRGLAVFHEI-VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           H G+ D G  +F  + +D +   EP++EHYGC++D+LGR+G   EA E I +M  EP   
Sbjct: 426 HAGLSDLGRKIFKSMTLDYR--IEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGV 483

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
           I GSLL AC++H N+++GE + Q+LM+IEP+N G+YV+LSN+YA++ RW+DV RVR L+ 
Sbjct: 484 IWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLN 543

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           +K + K PG S IE+D ++H F   D+ HP  +E+   ++++     E G+V D S VL 
Sbjct: 544 DKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQ 603

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           +++EE KE  L  HSEKLA+ FGLI T  G  +R++KNLR+C +CH   K +SK+Y R++
Sbjct: 604 EMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREI 663

Query: 613 SLRDKNRFHHIVEGTC 628
             RD++RFHH  +G C
Sbjct: 664 IARDRSRFHHFKDGMC 679



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 178/363 (49%), Gaps = 42/363 (11%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F  ++E N +SW  MI  ++  +    ALNL++ M+     PN +TF  +  SCA 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA- 230
           +   + GKQIH+ I+K      ++V +SL+ MYA+ G + +A  VF+    RDVVS TA 
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 231 ------------------------------IISGYAQLGLDEEAIELFRKLQVEGMISNY 260
                                         +ISGYA++G  +EA+ELF ++    +  + 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T A+VL+  +    +  G+Q+HS +      S + L N+LID+YSKCG +  +  +F+ 
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           +  + VISWN ++ GY+     +E + +F  M +  +  P+ VT L++L  C+H G  D 
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET-PNDVTMLSILPACAHLGAIDI 329

Query: 381 GLAVFHEIVDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
           G  + H  +D K  G          ++DM  + G +  A     N  F+    IL   L 
Sbjct: 330 GRWI-HVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA-----NQVFD---TILNKSLS 380

Query: 440 ACR 442
           +C 
Sbjct: 381 SCN 383


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 360/575 (62%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + + AC +  ++  G+++H   +K      +++ + L   Y+KC  + DA K+F+EM 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++ VSWTAMI  YS+     EAL  F +M+  +   ++    + L +C      + G+ 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLG 239
           +HS ++K  FES I+VG++L DMY+KAG +  A  VF    E R+VVS T +I GY +  
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E+ + +F +L+ +G+  N  T++S++ A +  AAL  G Q+H+ V++        + +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L+DMY KCG L ++ + FD + + T I+WN+++  + +HG+G++ ++ F  M +   VK
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRG-VK 407

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+++T++++L+GCSH G+ + GL  F+ + D   G  P  EHY CV+D+LGRAGR+ EA 
Sbjct: 408 PNAITFISLLTGCSHAGLVEEGLDYFYSM-DKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 466

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI  MPFEP A    S LGACR+H + ++G+   ++L+++EP+N+G  V+LSN+YA+  
Sbjct: 467 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANER 526

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WEDV  VR  M++  V K PG SW+++    H F A D SH  +  +  K+  L  + K
Sbjct: 527 QWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIK 586

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYVP    V  D+D+  KEK+L  HSE++A+ F LI  P G PI V KNLR+CVDCH+
Sbjct: 587 AAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHS 646

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SKV GRK+ +RD +RFHH  +G+CSCGDYW
Sbjct: 647 AIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 204/368 (55%), Gaps = 5/368 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + LR G+++HA +I   Y P  +L   L+  Y+KC  L  A K+FD M +RN+VSWTAMI
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMI 78

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           S  SQ +   EA+  F  M      P +F F++ + +CA     E+GKQ+H L +K    
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S ++VGS+L DMY+K G + +A  VFE +P +D VS TA+I GY+++G  EEA+  F+K+
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             E +  +     S L A   L A   G+ VHS V++    S + + N+L DMYSK G +
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDM 258

Query: 312 TYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
             +  VF   SE R V+S+  ++ GY +     + + +F  +R +  ++P+  T+ +++ 
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG-IEPNEFTFSSLIK 317

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            C++    ++G  +  +++  K  F+ +      +VDM G+ G +  A++    +  +PT
Sbjct: 318 ACANQAALEQGTQLHAQVM--KINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIG-DPT 374

Query: 431 AAILGSLL 438
                SL+
Sbjct: 375 EIAWNSLV 382



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 10/188 (5%)

Query: 41  QLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           Q+ K L   +E+   G+E     + +L+ AC NQ  L  G ++HA ++K  +    ++ +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC  L  A + FDE+ +   ++W +++S + Q     +A+  F RM+    +P
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP 408

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEA 213
           N  TF ++LT C+ A   E G      + K+      E H    S ++D+  +AGR+ EA
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY---SCVIDLLGRAGRLKEA 465

Query: 214 RGVFECLP 221
           +     +P
Sbjct: 466 KEFINRMP 473



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 114/273 (41%), Gaps = 50/273 (18%)

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           M+ +    A V+   +    L  GKQ+H+ ++         L N L++MYSKCG L ++ 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++FD M +R ++SW AM+ G S++    E +  F  MR   +V P    + + +  C+  
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASL 119

Query: 376 G--------------------------MED---------RGLAVFHEIVDCKDGFEPEIE 400
           G                          +ED             VF E+  CKD    E+ 
Sbjct: 120 GSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM-PCKD----EVS 174

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA---ILGSLLGACRVHYNVDIGEFVGQRL 457
            +  ++D   + G   EAL   K M  E       +L S LGAC        G  V   +
Sbjct: 175 -WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 458 MEIEPEN---AGNYVILSNLYASAGRWEDVTRV 487
           +++  E+    GN   L+++Y+ AG  E  + V
Sbjct: 234 VKLGFESDIFVGN--ALTDMYSKAGDMESASNV 264


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/571 (39%), Positives = 361/571 (63%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L  C  ++ L  G+  HA ++    +  +     LI  Y+KC  +  AR++FDEM  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSW  MI + +Q     EAL+L ++M R  T  +EFT ++VL +CA        + +H+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             IK+  + +++V ++LLD+YAK G + +A  VFE +P+R VV+ +++ +GY Q  + E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LFRK    G+  +    +SV+ A +GLAA+  GKQV++ + +    S + + +SLID
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLID 309

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  S +VF ++ +R V+ WNAM+ G S+H    EV+ LF  M++   + P+ V
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG-LSPNDV 368

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+++VLS C H G+  +G   F +++  +    P + HY C+VD L RAG++ EA + I 
Sbjct: 369 TFVSVLSACGHMGLVKKGQKYF-DLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            +PF  +A++ GSLL +CR H N+++ E   ++L +IEP N+GNY++LSN+YA+ G+W++
Sbjct: 428 KLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDE 487

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V ++R+L+KE  V K+ G+SWIE+   +H F   +R+HP   E+ +K+ ++  + ++ GY
Sbjct: 488 VAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGY 547

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
             +    L+ V E  K+++L  HSEKLA T GL+  P  APIR++KNLRIC DCH+F K 
Sbjct: 548 KVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKL 607

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            SK + R V +RD NRFHH   G CSCGD+W
Sbjct: 608 ASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 13/315 (4%)

Query: 35  TLCSNGQLTKALIEMATLGLEMR-----FEEY--DTLLNACVNQRTLRGGQRVHAHMIKT 87
           +L  NG+  +AL     L L+M+     F E+   ++L AC  +  L   Q +HA  IK 
Sbjct: 139 SLTQNGEENEAL----DLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKA 194

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
                V++ T L+  Y KC  + DA  +F+ M +R+VV+W++M + Y Q     +AL LF
Sbjct: 195 AMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALF 254

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +   +  + ++F  ++V+ +CAG      GKQ+++L+ KS F S+I+V SSL+DMYAK 
Sbjct: 255 RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKC 314

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G I E+  VF  + +R+VV   A+ISG ++     E + LF K+Q  G+  N VT+ SVL
Sbjct: 315 GGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVL 374

Query: 268 TALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           +A   +  +  G++    + +   +   V   + ++D  S+ G +  +  +   +     
Sbjct: 375 SACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNAS 434

Query: 327 IS-WNAMLVGYSKHG 340
            S W ++L     HG
Sbjct: 435 ASMWGSLLASCRTHG 449


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 367/596 (61%), Gaps = 15/596 (2%)

Query: 50  ATLGLEMRFEEYD----------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           A +G+ +R +E D          ++L AC + + L   + VHA  ++  +   V + T +
Sbjct: 309 AAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAI 368

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y KC  +  ARK+FD M++RN VSW AMI  Y++   + EAL LF RM+    +  +
Sbjct: 369 LDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTD 428

Query: 160 FTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +    L +C G  GF + G+++H L+++   ES++ V ++L+ MY K  R   A  VF+
Sbjct: 429 VSVLAALHAC-GELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFD 487

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  +  VS  A+I G  Q G  E+A+ LF ++Q+E +  +  T  S++ AL+ ++    
Sbjct: 488 ELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQ 547

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            + +H + +R  +   V +  +LIDMY+KCG ++ +R +F++  +R VI+WNAM+ GY  
Sbjct: 548 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGS 607

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G+  VELF  M+   KV P+  T+L+VLS CSH G+ D G   F  + +   G EP 
Sbjct: 608 HGSGKVAVELFEEMKSSGKV-PNETTFLSVLSACSHAGLVDEGQEYFSSMKE-DYGLEPG 665

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +EHYG +VD+LGRAG++ EA  FI+ MP EP  ++ G++LGAC++H NV++ E   QR+ 
Sbjct: 666 MEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIF 725

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EPE    +V+L+N+YA+A  W+DV RVR  M++K + K PG S ++L   +HTF++  
Sbjct: 726 ELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGS 785

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            +H   +++ A++ +L  + K  GYVPD   + +DV+++ K ++L  HSEKLA+ +GLI 
Sbjct: 786 TNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIR 844

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           T  G  I++ KNLR+C DCHN  K +S V GR++ +RD  RFHH  +G CSCGDYW
Sbjct: 845 TAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 203/391 (51%), Gaps = 8/391 (2%)

Query: 33  LKTLCSNGQLTKALIEMATL----GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           L+   S   L  AL   A +    G       + +LL  C  +  L  G+ VHA +    
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
             P     T L   Y KC    DAR++FD M  R+ V+W A+++ Y++   +  A+ + +
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 149 RMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
           RM   D E P+  T  +VL +CA A      +++H+  ++  F+  + V +++LD+Y K 
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G +  AR VF+ + +R+ VS  A+I GYA+ G   EA+ LF+++  EG+    V+  + L
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A   L  L  G++VH  ++R  + S V + N+LI MY KC     + +VFD +  +T +
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWNAM++G +++G   + V LF+ M+ EN VKPDS T ++++   +   + D   A +  
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLEN-VKPDSFTLVSIIPALAD--ISDPLQARWIH 552

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
               +   + ++     ++DM  + GRV  A
Sbjct: 553 GYSIRLHLDQDVYVLTALIDMYAKCGRVSIA 583



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 170/339 (50%), Gaps = 6/339 (1%)

Query: 129 AMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           A + A + ++    AL  F  M   S + P   TF ++L  CA       G+ +H+ +  
Sbjct: 194 ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAA 253

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
                     ++L +MYAK  R  +AR VF+ +P RD V+  A+++GYA+ GL E A+ +
Sbjct: 254 RGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGM 313

Query: 248 FRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
             ++Q E G   + VT  SVL A +   ALG  ++VH+  +R      V +  +++D+Y 
Sbjct: 314 VVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYC 373

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           KCG++  +R+VFD M +R  +SWNAM+ GY+++G   E + LF  M  E  V    V+ L
Sbjct: 374 KCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEG-VDVTDVSVL 432

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           A L  C   G  D G  V HE++  + G E  +     ++ M  +  R   A +    + 
Sbjct: 433 AALHACGELGFLDEGRRV-HELL-VRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELG 490

Query: 427 FEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEIEPEN 464
           ++   +    +LG  +   + D +  F   +L  ++P++
Sbjct: 491 YKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/610 (39%), Positives = 359/610 (58%), Gaps = 25/610 (4%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCE 107
           M   G+E+      ++L AC +   L  G+ +HA++++        ++ + L+  Y  C 
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVL 166
            +   R++FD +  R +  W AMIS Y++     +AL LFI M++ +   PN  T A+V+
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C     F   + IH   +K  F+   YV ++L+DMY++ G++  +  +F+ +  RD V
Sbjct: 408 PACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRV 467

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQ-VEGMIS----------------NYVTYASVLTA 269
           S   +I+GY   G    A+ L  ++Q +E                    N +T  +VL  
Sbjct: 468 SWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPG 527

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LAA+  GK++H++ +R  + S + + ++L+DMY+KCG L  SRRVF+ M  + VI+W
Sbjct: 528 CAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 587

Query: 330 NAMLVGYSKHGMGREVVELFNLMREE----NKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           N +++    HG G E +ELF  M  E     + KP+ VT++ V + CSH G+   GL +F
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 647

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE-PTAAILGSLLGACRVH 444
           + +     G EP  +HY CVVD+LGRAG++ EA E +  MP E        SLLGACR+H
Sbjct: 648 YRMKH-DHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 706

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            NV++GE   + L+ +EP  A +YV+LSN+Y+SAG W     VR+ M++  V K+PG SW
Sbjct: 707 QNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSW 766

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           IE    +H F A D SHP  E+L   ++ LS K ++ GYVPD SCVL++VDE++KE +L 
Sbjct: 767 IEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLC 826

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
           GHSEKLA+ FG++ TP G  IRV KNLR+C DCH   KF+SK+  R++ +RD  RFHH  
Sbjct: 827 GHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFK 886

Query: 625 EGTCSCGDYW 634
           EGTCSCGDYW
Sbjct: 887 EGTCSCGDYW 896



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 196/374 (52%), Gaps = 8/374 (2%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNK 105
           IEM   G       +  +L A    + L+ G+++HA  +K  Y    V +   L+  Y K
Sbjct: 81  IEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGK 140

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + D  K+FD + +R+ VSW + I+A  +     +AL  F  M   + E + FT  +V
Sbjct: 141 CGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSV 200

Query: 166 LTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             +C+      G  LGKQ+H   ++   +   +  ++L+ MYAK GR+ +++ +FE   +
Sbjct: 201 ALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVD 259

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD+VS   +IS ++Q     EA+  FR + +EG+  + VT ASVL A S L  L  GK++
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 319

Query: 283 HSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           H++VLR  ++     + ++L+DMY  C  +   RRVFD++  R +  WNAM+ GY+++G+
Sbjct: 320 HAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGL 379

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             + + LF  M +   + P++ T  +V+  C H        ++    V  K GF+ +   
Sbjct: 380 DEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAV--KLGFKEDRYV 437

Query: 402 YGCVVDMLGRAGRV 415
              ++DM  R G++
Sbjct: 438 QNALMDMYSRMGKM 451



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 6/257 (2%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+  SW   + + ++     EA++ +I M  S   P+ F F  VL + +G    + G+QI
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 182 HSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           H+  +K  +  S + V ++L++MY K G I +   VF+ + +RD VS  + I+   +   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLA---ALGHGKQVHSHVLRFEIPSYVVL 297
            E+A+E FR +Q+E M  +  T  SV  A S L     L  GKQ+H + LR         
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFT 233

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+L+ MY+K G +  S+ +F++  +R ++SWN M+  +S+     E +  F LM  E  
Sbjct: 234 NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG- 292

Query: 358 VKPDSVTYLAVLSGCSH 374
           V+ D VT  +VL  CSH
Sbjct: 293 VELDGVTIASVLPACSH 309



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 36/266 (13%)

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           P R   S    +    +     EAI  + ++ V G   +   + +VL A+SGL  L  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 281 QVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           Q+H+  ++F    S V + N+L++MY KCG +    +VFD +++R  +SWN+ +    + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----HG---GMEDRGLAV------- 384
               + +E F  M+ EN ++  S T ++V   CS     HG   G +  G ++       
Sbjct: 173 EKWEQALEAFRAMQMEN-MELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT 231

Query: 385 ------------FHEIVDCKDGFEPEIEH----YGCVVDMLGRAGRVGEALEFIKNMPFE 428
                          + D K  FE  ++     +  ++    ++ R  EAL F + M  E
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 429 PT---AAILGSLLGACRVHYNVDIGE 451
                   + S+L AC     +D+G+
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGK 317


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/656 (36%), Positives = 383/656 (58%), Gaps = 68/656 (10%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A + M + G+      +  +L +C   + L  G++VH+ ++K      V +   L+  Y 
Sbjct: 132 AFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYA 191

Query: 105 KCE------------------------------CLSD-ARKMFDEMRERNVVSWTAMISA 133
           KC                               C  D A  +FD+M + ++VSW ++I+ 
Sbjct: 192 KCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITG 251

Query: 134 YSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           Y  + +   AL  F  ML+S + +P++FT  +VL++CA     +LGKQIH+ I++++ + 
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDI 311

Query: 193 HIYVGSSLLDMYAKAGR---------------------------------IHEARGVFEC 219
              VG++L+ MYAK+G                                  I  AR +F+ 
Sbjct: 312 AGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDS 371

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           L  RDVV+ TA+I GYAQ GL  +A+ LFR +  EG   N  T A+VL+ +S LA+L HG
Sbjct: 372 LKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG 431

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSK 338
           KQ+H+  +R E  S V + N+LI MYS+ GS+  +R++F+++ S R  ++W +M++  ++
Sbjct: 432 KQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQ 491

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG+G E +ELF  M   N +KPD +TY+ VLS C+H G+ ++G + F+ + +  +  EP 
Sbjct: 492 HGLGNEAIELFEKMLRIN-LKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHN-IEPT 549

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             HY C++D+LGRAG + EA  FI+NMP EP     GSLL +CRVH  VD+ +   ++L+
Sbjct: 550 SSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLL 609

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            I+P N+G Y+ L+N  ++ G+WED  +VR+ MK+KAV K+ G SW+++   +H F   D
Sbjct: 610 LIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVED 669

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP R+ +   + ++  + K+ G++PD + VL+D+++E KE++L  HSEKLA+ F LI 
Sbjct: 670 ALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALIN 729

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           TP+   +R++KNLR+C DCH+  +++S +  R++ +RD  RFHH  +G+CSC DYW
Sbjct: 730 TPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 182/386 (47%), Gaps = 72/386 (18%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + LLN  V   +     R+   M +KT +     L       + K   L  AR++FDE+ 
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSA-----HAKAGNLDSARRVFDEIP 106

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + + VSWT MI  Y+       A++ F+RM+ S   P +FTF  VL SCA A   ++GK+
Sbjct: 107 QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK 166

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAG------------RIHE---------------- 212
           +HS ++K      + V +SLL+MYAK G            R+ +                
Sbjct: 167 VHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQ 226

Query: 213 ---ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR-KLQVEGMISNYVTYASVLT 268
              A  +F+ + + D+VS  +II+GY   G D  A+E F   L+   +  +  T  SVL+
Sbjct: 227 FDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR------------ 316
           A +   +L  GKQ+H+H++R ++     + N+LI MY+K G++  + R            
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNV 346

Query: 317 ---------------------VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
                                +FD++  R V++W AM+VGY+++G+  + + LF LM  E
Sbjct: 347 IAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE 406

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRG 381
              KP++ T  AVLS  S     D G
Sbjct: 407 GP-KPNNYTLAAVLSVISSLASLDHG 431



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 43/296 (14%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +++L  +AKAG +  AR VF+ +P+ D VS T +I GY  LGL + A+  F ++   G+ 
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
               T+ +VL + +   AL  GK+VHS V++      V + NSL++MY+KCG    ++ V
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVV 202

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M  +   +WN M+  + +       + LF+ M +     PD V++ ++++G  H G 
Sbjct: 203 FDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD-----PDIVSWNSIITGYCHQGY 257

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
           + R L  F  +                                 +K+   +P    LGS+
Sbjct: 258 DIRALETFSFM---------------------------------LKSSSLKPDKFTLGSV 284

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTRVREL 490
           L AC    ++ +G+ +   ++  + + A   GN +I  ++YA +G  E   R+ E+
Sbjct: 285 LSACANRESLKLGKQIHAHIVRADVDIAGAVGNALI--SMYAKSGAVEVAHRIVEI 338



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 279 GKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           G+ +H+ +++  +    V L N+L+++Y K GS + + R+FD M  +T  SWN +L  ++
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           K G       +F+ + +     PDSV++  ++ G +H G+    +  F  +V    G  P
Sbjct: 91  KAGNLDSARRVFDEIPQ-----PDSVSWTTMIVGYNHLGLFKSAVHAFLRMV--SSGISP 143


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 367/608 (60%), Gaps = 9/608 (1%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +   C NG + +AL     M T  ++M      ++L  C     + GG  VH ++IK   
Sbjct: 220 ISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGL 279

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V++   LI  Y+K   L DA+++FD M  R++VSW ++I+AY Q      AL  F  
Sbjct: 280 ESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKE 339

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAG 208
           ML     P+  T  ++ +         +G+ +H  +++  + E  I +G++L++MYAK G
Sbjct: 340 MLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG 399

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVTYASV 266
            I  AR VFE LP RDV+S   +I+GYAQ GL  EAI+ +  ++ EG  ++ N  T+ S+
Sbjct: 400 SIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME-EGRTIVPNQGTWVSI 458

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L A S + AL  G ++H  +++  +   V +   LIDMY KCG L  +  +F  + + T 
Sbjct: 459 LPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETS 518

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           + WNA++     HG G + ++LF  MR +  VK D +T++++LS CSH G+ D     F 
Sbjct: 519 VPWNAIISSLGIHGHGEKALQLFKDMRADG-VKADHITFVSLLSACSHSGLVDEAQWCF- 576

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           + +  +   +P ++HYGC+VD+ GRAG + +A   + NMP +  A+I G+LL ACR+H N
Sbjct: 577 DTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGN 636

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            ++G F   RL+E++ EN G YV+LSN+YA+ G+WE   +VR L +++ + K PG S + 
Sbjct: 637 AELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVV 696

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           +  ++  F+A ++SHP   E+  +++ L+ K K  GYVPD S VL DV+E++KE++L  H
Sbjct: 697 VGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSH 756

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SE+LA+ FG+I TP  +PIR+ KNLR+C DCHN  K++SK+  R++ +RD NRFHH  +G
Sbjct: 757 SERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDG 816

Query: 627 TCSCGDYW 634
            CSCGDYW
Sbjct: 817 ICSCGDYW 824



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 217/389 (55%), Gaps = 9/389 (2%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+   F  +  +L AC+   +L  G+++H  ++K  +   VY+   LI  Y++   +  A
Sbjct: 145 GVRPDFYTFPPVLKACL---SLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVA 201

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            K+F +M  R+V SW AMIS + Q  +  EAL +  RM   + + +  T +++L  CA +
Sbjct: 202 HKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQS 261

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
                G  +H  +IK   ES ++V ++L++MY+K GR+ +A+ VF+ +  RD+VS  +II
Sbjct: 262 NDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSII 321

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-I 291
           + Y Q      A+  F+++   GM  + +T  S+ +    L+    G+ VH  V+R   +
Sbjct: 322 AAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWL 381

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              +V+ N+L++MY+K GS+  +R VF+ +  R VISWN ++ GY+++G+  E ++ +N+
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M E   + P+  T++++L   SH G   +G+ +   ++  K+    ++    C++DM G+
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLI--KNCLFLDVFVATCLIDMYGK 499

Query: 412 AGRVGEALEFIKNMPFE---PTAAILGSL 437
            GR+ +A+     +P E   P  AI+ SL
Sbjct: 500 CGRLEDAMSLFYEIPQETSVPWNAIISSL 528



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 194/370 (52%), Gaps = 13/370 (3%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ +  +C N   +   +++HA ++       V L T+L+  Y     LS +   F  +
Sbjct: 53  DFNLVFRSCTN---INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHI 109

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELG 178
           + +N+ SW +M+SAY ++    ++++    +L  S   P+ +TF  VL +C        G
Sbjct: 110 QRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADG 166

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H  ++K  FE  +YV +SL+ +Y++ G +  A  VF  +P RDV S  A+ISG+ Q 
Sbjct: 167 EKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQN 226

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+ +  +++ E +  + VT +S+L   +    +  G  VH +V++  + S V + 
Sbjct: 227 GNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVS 286

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+LI+MYSK G L  ++RVFD M  R ++SWN+++  Y ++      +  F  M     +
Sbjct: 287 NALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG-M 345

Query: 359 KPDSVTYLAVLSGCSHGGMEDR--GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           +PD +T +++ S    G + DR  G AV   +V C+   E +I     +V+M  + G + 
Sbjct: 346 RPDLLTVVSLAS--IFGQLSDRRIGRAVHGFVVRCR-WLEVDIVIGNALVNMYAKLGSID 402

Query: 417 EALEFIKNMP 426
            A    + +P
Sbjct: 403 CARAVFEQLP 412



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            KQ+H+ +L       VVL   L+ +Y+  G L+ S   F ++  + + SWN+M+  Y +
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVDCKDGFEP 397
            G  R+ ++    +   + V+PD  T+  VL  C S    E     V       K GFE 
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVL------KMGFEH 180

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           ++     ++ +  R G V  A +   +MP     +    + G C+
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 358/587 (60%), Gaps = 9/587 (1%)

Query: 55   EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
            +M+ EE       Y ++L  C+    L  G+++H+ +IKT ++   Y+ + LI  Y K  
Sbjct: 480  QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539

Query: 108  CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             L  A  +      ++VVSWT MI+ Y+Q     +AL  F +ML      +E      ++
Sbjct: 540  KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS 599

Query: 168  SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            +CAG    + G+QIH+    S F S +   ++L+ +Y++ G+I E+   FE     D ++
Sbjct: 600  ACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA 659

Query: 228  CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              A++SG+ Q G +EEA+ +F ++  EG+ +N  T+ S + A S  A +  GKQVH+ + 
Sbjct: 660  WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT 719

Query: 288  RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
            +    S   + N+LI MY+KCGS++ + + F  +S +  +SWNA++  YSKHG G E ++
Sbjct: 720  KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALD 779

Query: 348  LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
             F+ M   N V+P+ VT + VLS CSH G+ D+G+A F E ++ + G  P+ EHY CVVD
Sbjct: 780  SFDQMIHSN-VRPNHVTLVGVLSACSHIGLVDKGIAYF-ESMNSEYGLSPKPEHYVCVVD 837

Query: 408  MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
            ML RAG +  A EFI+ MP +P A +  +LL AC VH N++IGEF    L+E+EPE++  
Sbjct: 838  MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSAT 897

Query: 468  YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
            YV+LSNLYA + +W+     R+ MKEK V K+PG+SWIE+   +H+F+  D++HP+ +E+
Sbjct: 898  YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 957

Query: 528  SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
                + L+ +  E GYV D   +L ++  EQK+ ++  HSEKLA++FGL+  P   PI V
Sbjct: 958  HEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINV 1017

Query: 588  IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +KNLR+C DCH + KFVSKV  R++ +RD  RFHH   G CSC DYW
Sbjct: 1018 MKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 4/383 (1%)

Query: 37  CSNGQLTKALIEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C  G+    L +   L GLE       +L+ AC    TL  GQ++HA+  K  +     +
Sbjct: 367 CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI 426

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A   F E    NVV W  M+ AY        +  +F +M   + 
Sbjct: 427 EGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 486

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN++T+ ++L +C      ELG+QIHS IIK+NF+ + YV S L+DMYAK G++  A  
Sbjct: 487 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 546

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +      +DVVS T +I+GY Q   D++A+  FR++   G+ S+ V   + ++A +GL A
Sbjct: 547 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 606

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+Q+H+        S +  QN+L+ +YS+CG +  S   F+       I+WNA++ G
Sbjct: 607 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           + + G   E + +F  M  E  +  ++ T+ + +   S      +G  V H ++  K G+
Sbjct: 667 FQQSGNNEEALRVFVRMNREG-IDNNNFTFGSAVKAASETANMKQGKQV-HAVI-TKTGY 723

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA 418
           + E E    ++ M  + G + +A
Sbjct: 724 DSETEVCNALISMYAKCGSISDA 746



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 193/371 (52%), Gaps = 5/371 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQR-TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           G+    +    LL  C+    +L  G+++H+ ++K        L  +L  FY     L  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-A 170
           A K+FDEM ER + +W  MI   + +    E   LF+RM+  +  PNE TF+ VL +C  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
           G+  F++ +QIH+ I+         V + L+D+Y++ G +  AR VF+ L  +D  S  A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +ISG ++   + EAI LF  + V G++     ++SVL+A   + +L  G+Q+H  VL+  
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
             S   + N+L+ +Y   G+L  +  +F NMS+R  +++N ++ G S+ G G + +ELF 
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M  +  ++PDS T  +++  CS  G   RG  +       K GF    +  G ++++  
Sbjct: 379 RMHLDG-LEPDSNTLASLVVACSADGTLFRGQQL--HAYTTKLGFASNNKIEGALLNLYA 435

Query: 411 RAGRVGEALEF 421
           +   +  AL++
Sbjct: 436 KCADIETALDY 446



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 203/416 (48%), Gaps = 18/416 (4%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGG-------QRVHAHMIKTCYRPP 92
           G++    + M +  +      +  +L AC      RGG       +++HA ++    R  
Sbjct: 168 GEVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFDVVEQIHARILYQGLRDS 221

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
             +   LI  Y++   +  AR++FD +R ++  SW AMIS  S+     EA+ LF  M  
Sbjct: 222 TVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYV 281

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
               P  + F++VL++C      E+G+Q+H L++K  F S  YV ++L+ +Y   G +  
Sbjct: 282 LGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLIS 341

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F  + +RD V+   +I+G +Q G  E+A+ELF+++ ++G+  +  T AS++ A S 
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
              L  G+Q+H++  +    S   ++ +L+++Y+KC  +  +   F       V+ WN M
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           LV Y      R    +F  M+ E ++ P+  TY ++L  C   G  + G  +  +I+  K
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIE-EIVPNQYTYPSILKTCIRLGDLELGEQIHSQII--K 518

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             F+        ++DM  + G++  A + +  + F     +  + + A    YN D
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDIL--IRFAGKDVVSWTTMIAGYTQYNFD 572



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 186/387 (48%), Gaps = 12/387 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+      + ++L+AC    +L  G+++H  ++K  +    Y+   L+  Y    
Sbjct: 278 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 337

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A  +F  M +R+ V++  +I+  SQ  +  +A+ LF RM     EP+  T A+++ 
Sbjct: 338 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 397

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+       G+Q+H+   K  F S+  +  +LL++YAK   I  A   F      +VV 
Sbjct: 398 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++  Y  L     +  +FR++Q+E ++ N  TY S+L     L  L  G+Q+HS ++
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +  F++ +YV   + LIDMY+K G L  +  +    + + V+SW  M+ GY+++    + 
Sbjct: 518 KTNFQLNAYVC--SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 575

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +  F  M +   ++ D V     +S C+       G  +  +   C  GF  ++     +
Sbjct: 576 LTTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQA--CVSGFSSDLPFQNAL 632

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAA 432
           V +  R G++ E+      + FE T A
Sbjct: 633 VTLYSRCGKIEESY-----LAFEQTEA 654



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           +N +  +  + M   G++     + + + A      ++ G++VHA + KT Y     +  
Sbjct: 672 NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 731

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            LI  Y KC  +SDA K F E+  +N VSW A+I+AYS+     EAL+ F +M+ S+  P
Sbjct: 732 ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 791

Query: 158 NEFTFATVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           N  T   VL++C+       G   FE     + L  K   E ++ V    +DM  +AG +
Sbjct: 792 NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP--EHYVCV----VDMLTRAGLL 845

Query: 211 HEARGVFECLP 221
             A+   + +P
Sbjct: 846 SRAKEFIQEMP 856


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/571 (40%), Positives = 363/571 (63%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L  C     +   +  H  +I+      V L   LI  Y+KC  +  AR++FD M ER+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSW  MI  Y++     EAL++F+ M     + +EFT ++VL++C         K++H 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L +K+  + ++YVG++LLD+YAK G I +A  VFE + ++  V+ +++++GY Q    EE
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ L+R+ Q   +  N  T +SV+ A S LAAL  GKQ+H+ + +    S V + +S +D
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGSL  S  +F  + E+ +  WN ++ G++KH   +EV+ LF  M+++  + P+ V
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG-MHPNEV 365

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+ ++LS C H G+ + G   F +++    G  P + HY C+VD+LGRAG + EA E IK
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 424

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           ++PF+PTA+I GSLL +CRV+ N+++ E   ++L E+EPENAGN+V+LSN+YA+  +WE+
Sbjct: 425 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 484

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           + + R+L+++  V K  G+SWI++   +HTF   +  HP   E+ + +  L +KF++ GY
Sbjct: 485 IAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 544

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
            P +   L+DV+  +KE++L+ HSEKLAL FGL+  PE +P+R++KNLRICVDCH F K 
Sbjct: 545 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKA 604

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            S    R + +RD NRFHH  +G CSCGD+W
Sbjct: 605 ASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 14/227 (6%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           + LE       +++ AC N   L  G+++HA + K+ +   V++ +  +  Y KC  L +
Sbjct: 257 MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRE 316

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           +  +F E++E+N+  W  +IS +++ A   E + LF +M +    PNE TF+++L+ C  
Sbjct: 317 SYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 376

Query: 172 AFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
               E G++   L+  +     ++   S ++D+  +AG + EA  + + +P       TA
Sbjct: 377 TGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIP----FDPTA 432

Query: 231 IISG--------YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
            I G        Y  L L E A E   +L+ E    N+V  +++  A
Sbjct: 433 SIWGSLLASCRVYKNLELAEVAAEKLFELEPENA-GNHVLLSNIYAA 478


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 357/588 (60%), Gaps = 9/588 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG++     +  ++ AC   R    G R+H  ++K  Y+  V++   LI  Y KC+ 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
              +R++FDEM ++N VSW+A+I A  Q     E  +LF +ML   + P+      +L +
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNA 117

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A     E    ++ +++++  +    V S+   M+A+ GR+  AR +F+ +  +D+V+ 
Sbjct: 118 MACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTW 177

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
              I  Y +  +  EA+ L +++ ++G+  + +T   V+ A S LA+      VH  +  
Sbjct: 178 ATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITT 237

Query: 289 -FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
            F     + ++ +LID+Y KCGSLTY+R+VFD M ER +I+W+AM+ GY  HG GRE + 
Sbjct: 238 GFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALN 297

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVV 406
           LF+ M+    VKPD +T++++LS CSH G+   G   F+ +   +D G  P  EHY C+V
Sbjct: 298 LFDQMKAS--VKPDHITFVSILSACSHSGLVAEGWECFNSMA--RDFGVTPRPEHYACMV 353

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAG++ EA +FI+ MP  P AA+ G+LLGACR+H NVD+ E V + L +++P NAG
Sbjct: 354 DILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAG 413

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YVIL N+Y   G+ ++   +R LMK + V K  G S IE+   L+ F A DRSHP  + 
Sbjct: 414 RYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDL 473

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + +++++L  + ++ GY PD++ VL+DVDEE KE +L  HSEKLA+ FGL+    G+ IR
Sbjct: 474 IYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIR 533

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + KNLR+C DCH   KF+SKV GR++ +RD +RFHH   G CSC DYW
Sbjct: 534 IRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 365/602 (60%), Gaps = 8/602 (1%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   K L   ++M   G+E+      ++   C + R +  G+ VH   +K C+     
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A+ +F EM  R+VVS+T+MI+ Y+++  + EA+ LF  M    
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+ +T   VL  CA     + GK++H  I +++    I+V ++L+DMYAK G + EA 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGL 273
            VF  +  +D++S   +I GY++     EA+ LF  L VE   S +  T A VL A + L
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +A   G+++H +++R    S   + NSL+DMY+KCG+L  +R +FD+++ + ++SW  M+
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMI 572

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCK 392
            GY  HG G+E + LFN MR+   ++PD ++++++L  CSH G+ D G   F+ +  +CK
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAG-IEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHY C+VDML R G + +A  FI+NMP  P A I G+LL  CR+H++V + E 
Sbjct: 632 --IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAER 689

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           V +++ E+EPEN G YV+++N+YA A +WE+V R+R+ + ++ + K+PG SWIE+   ++
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D S+P  E++ A ++ +  +  E GY P     L D +E +KE+ L GHSEKLA+
Sbjct: 750 IFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
             G+I +  G  IRV KNLR+C DCH  AKF+SK+  R++ LRD NRFH   +G CSC  
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 633 YW 634
           +W
Sbjct: 870 FW 871



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 204/366 (55%), Gaps = 2/366 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + G+EM    +  +  +  + R++ GG+++H +++K+ +     +   L+ FY K  
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNH 244

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  ARK+FDEM ER+V+SW ++I+ Y     + + L++F++ML S  E +  T  +V  
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFA 304

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CA +    LG+ +H   +K+ F       ++LLDMY+K G +  A+ VF  +  R VVS
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+GYA+ GL  EA++LF +++ EG+  +  T  +VL   +    L  GK+VH  + 
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
             ++   + + N+L+DMY+KCGS+  +  VF  M  + +ISWN ++ GYSK+    E + 
Sbjct: 425 ENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALS 484

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LFNL+  E +  PD  T   VL  C+     D+G  +   I+  ++G+  +      +VD
Sbjct: 485 LFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM--RNGYFSDRHVANSLVD 542

Query: 408 MLGRAG 413
           M  + G
Sbjct: 543 MYAKCG 548



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 206/411 (50%), Gaps = 10/411 (2%)

Query: 9   RAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLG-LEMRFEEYDTLLNA 67
           RA S  TF +      S       L+  C +G L  A+  +   G  ++      ++L  
Sbjct: 50  RADSITTFDR------SVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQL 103

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C + ++L+ G+ V   +    +     L ++L + Y  C  L +A ++FD+++    + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFW 163

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
             +++  ++      ++ LF +M+ S  E + +TF+ V  S +       G+Q+H  I+K
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILK 223

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           S F     VG+SL+  Y K  R+  AR VF+ + ERDV+S  +II+GY   GL E+ + +
Sbjct: 224 SGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F ++   G+  +  T  SV    +    +  G+ VH   ++          N+L+DMYSK
Sbjct: 284 FVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSK 343

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG L  ++ VF  MS R+V+S+ +M+ GY++ G+  E V+LF  M EE  + PD  T  A
Sbjct: 344 CGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG-ISPDVYTVTA 402

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           VL+ C+   + D G  V   I +   GF+  + +   ++DM  + G + EA
Sbjct: 403 VLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREA 451


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 347/571 (60%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C  +R+L  G+  H   I             LI  Y KC     AR++FD M  R+
Sbjct: 62  LLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRS 121

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           ++SW  MI+ Y+      EAL LF RM R  T+  EFT ++ L +CA  +     KQ+H+
Sbjct: 122 IISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHT 181

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + IK   +S  +VG++ LD+YAK   I +A  VFE +PE+  V+ +++ +G+ Q GL EE
Sbjct: 182 IAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEE 241

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
            + LF+  Q EGM     T +S+L+  + LA +  G QVH+ +++      + +  SL+D
Sbjct: 242 VLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVD 301

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           +Y+KCG +  S  VF +M E+ V+ WNAM+  +S+H    E + LF  M++   + P+ V
Sbjct: 302 VYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVG-IFPNEV 360

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           TYL++LS CSH G+ + G   F+ ++  +   EP + HY C+VD+LGR+G+  EA + + 
Sbjct: 361 TYLSILSACSHTGLVEEGRHYFNLLLSDRTA-EPNVLHYSCMVDVLGRSGKTDEAWKLLD 419

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            MPFEPTA++ GSLLG+ R+H N+ +     ++L  +EPEN GN+V+LSN+YA++G WE+
Sbjct: 420 KMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWEN 479

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V   R+ +++    K+ GRSWIE    +H F A +R HP   ++  K++++  + ++  +
Sbjct: 480 VVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISH 539

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
             +  C L+DV  +QKE++L  HSEKLA  FGLI  P   PI + KNLRIC DCH+F K 
Sbjct: 540 RANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKI 599

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VS +  R+V +RD NRFHH  +G+CSCGD+W
Sbjct: 600 VSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 159/326 (48%), Gaps = 9/326 (2%)

Query: 10  AFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACV 69
           A S  +       +  +  N ++++ L       K    M   G +M      + L AC 
Sbjct: 116 AMSVRSIISWNTMIAGYTHNREDVEAL-------KLFSRMHREGTQMTEFTLSSTLCACA 168

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
            +  +   +++H   IK       ++ T  +  Y KC  + DA  +F+ M E+  V+W++
Sbjct: 169 AKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSS 228

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           + + + Q     E L LF    R   +  EFT +++L++CA       G Q+H++I+K  
Sbjct: 229 LFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHG 288

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F  +++V +SL+D+YAK G+I ++  VF  + E++VV   A+I+ +++     EA+ LF 
Sbjct: 289 FHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFE 348

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS-LIDMYSKC 308
           K+Q  G+  N VTY S+L+A S    +  G+   + +L        VL  S ++D+  + 
Sbjct: 349 KMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRS 408

Query: 309 GSLTYSRRVFDNMS-ERTVISWNAML 333
           G    + ++ D M  E T   W ++L
Sbjct: 409 GKTDEAWKLLDKMPFEPTASMWGSLL 434



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 3/266 (1%)

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           FT   +L  CA      +GK  H L I     +     + L+++Y K G+   AR VF+ 
Sbjct: 57  FTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDA 116

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +  R ++S   +I+GY     D EA++LF ++  EG      T +S L A +   A+   
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIEC 176

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           KQ+H+  ++  + S   +  + +D+Y+KC  +  +  VF+NM E+T ++W+++  G+ ++
Sbjct: 177 KQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQN 236

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G+  EV+ LF   + E  ++    T  ++LS C+   +   G  V   IV  K GF   +
Sbjct: 237 GLHEEVLCLFQSTQREG-MQLTEFTVSSILSTCASLALIIEGTQVHAVIV--KHGFHRNL 293

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM 425
                +VD+  + G++ ++ E   +M
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADM 319



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 20/198 (10%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           ++VE  + +  T   +L   +   +L  GK  H   + F + +  V  N LI++Y+KCG 
Sbjct: 47  VRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQ 106

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
              +RRVFD MS R++ISWN M+ GY+ +    E ++LF+ M  E   +    T  + L 
Sbjct: 107 NDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG-TQMTEFTLSSTLC 165

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY--------GCVVDMLGRAGRVGEALEFI 422
            C          A  + I++CK      I+             +D+  +   + +A    
Sbjct: 166 AC----------AAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVF 215

Query: 423 KNMPFEPTAAILGSLLGA 440
           +NMP E T+    SL   
Sbjct: 216 ENMP-EKTSVTWSSLFAG 232


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 358/587 (60%), Gaps = 9/587 (1%)

Query: 55   EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
            +M+ EE       Y ++L  C+    L  G+++H+ +IKT ++   Y+ + LI  Y K  
Sbjct: 440  QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 499

Query: 108  CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             L  A  +      ++VVSWT MI+ Y+Q     +AL  F +ML      +E      ++
Sbjct: 500  KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS 559

Query: 168  SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            +CAG    + G+QIH+    S F S +   ++L+ +Y++ G+I E+   FE     D ++
Sbjct: 560  ACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA 619

Query: 228  CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              A++SG+ Q G +EEA+ +F ++  EG+ +N  T+ S + A S  A +  GKQVH+ + 
Sbjct: 620  WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT 679

Query: 288  RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
            +    S   + N+LI MY+KCGS++ + + F  +S +  +SWNA++  YSKHG G E ++
Sbjct: 680  KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALD 739

Query: 348  LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
             F+ M   N V+P+ VT + VLS CSH G+ D+G+A F E ++ + G  P+ EHY CVVD
Sbjct: 740  SFDQMIHSN-VRPNHVTLVGVLSACSHIGLVDKGIAYF-ESMNSEYGLSPKPEHYVCVVD 797

Query: 408  MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
            ML RAG +  A EFI+ MP +P A +  +LL AC VH N++IGEF    L+E+EPE++  
Sbjct: 798  MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSAT 857

Query: 468  YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
            YV+LSNLYA + +W+     R+ MKEK V K+PG+SWIE+   +H+F+  D++HP+ +E+
Sbjct: 858  YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 917

Query: 528  SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
                + L+ +  E GYV D   +L ++  EQK+ ++  HSEKLA++FGL+  P   PI V
Sbjct: 918  HEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINV 977

Query: 588  IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +KNLR+C DCH + KFVSKV  R++ +RD  RFHH   G CSC DYW
Sbjct: 978  MKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 4/383 (1%)

Query: 37  CSNGQLTKALIEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C  G+    L +   L GLE       +L+ AC    TL  GQ++HA+  K  +     +
Sbjct: 327 CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI 386

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A   F E    NVV W  M+ AY        +  +F +M   + 
Sbjct: 387 EGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEI 446

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN++T+ ++L +C      ELG+QIHS IIK+NF+ + YV S L+DMYAK G++  A  
Sbjct: 447 VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 506

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +      +DVVS T +I+GY Q   D++A+  FR++   G+ S+ V   + ++A +GL A
Sbjct: 507 ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 566

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+Q+H+        S +  QN+L+ +YS+CG +  S   F+       I+WNA++ G
Sbjct: 567 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 626

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           + + G   E + +F  M  E  +  ++ T+ + +   S      +G  V H ++  K G+
Sbjct: 627 FQQSGNNEEALRVFVRMNREG-IDNNNFTFGSAVKAASETANMKQGKQV-HAVI-TKTGY 683

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA 418
           + E E    ++ M  + G + +A
Sbjct: 684 DSETEVCNALISMYAKCGSISDA 706



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 190/360 (52%), Gaps = 5/360 (1%)

Query: 64  LLNACVNQR-TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL  C+    +L  G+++H+ ++K        L  +L  FY     L  A K+FDEM ER
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 109

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGKQI 181
            + +W  MI   + +    E   LF+RM+  +  PNE TF+ VL +C  G+  F++ +QI
Sbjct: 110 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 169

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ I+         V + L+D+Y++ G +  AR VF+ L  +D  S  A+ISG ++   +
Sbjct: 170 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 229

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EAI LF  + V G++     ++SVL+A   + +L  G+Q+H  VL+    S   + N+L
Sbjct: 230 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 289

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + +Y   G+L  +  +F NMS+R  +++N ++ G S+ G G + +ELF  M  +  ++PD
Sbjct: 290 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG-LEPD 348

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           S T  +++  CS  G   RG  +       K GF    +  G ++++  +   +  AL++
Sbjct: 349 SNTLASLVVACSADGTLFRGQQL--HAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 406



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 196/395 (49%), Gaps = 18/395 (4%)

Query: 61  YDTLLNACVNQRTLRGG-------QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           +  +L AC      RGG       +++HA ++    R    +   LI  Y++   +  AR
Sbjct: 149 FSGVLEAC------RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 202

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++FD +R ++  SW AMIS  S+     EA+ LF  M      P  + F++VL++C    
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 262

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             E+G+Q+H L++K  F S  YV ++L+ +Y   G +  A  +F  + +RD V+   +I+
Sbjct: 263 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 322

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           G +Q G  E+A+ELF+++ ++G+  +  T AS++ A S    L  G+Q+H++  +    S
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 382

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
              ++ +L+++Y+KC  +  +   F       V+ WN MLV Y      R    +F  M+
Sbjct: 383 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 442

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            E ++ P+  TY ++L  C   G  + G  +  +I+  K  F+        ++DM  + G
Sbjct: 443 IE-EIVPNQYTYPSILKTCIRLGDLELGEQIHSQII--KTNFQLNAYVCSVLIDMYAKLG 499

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           ++  A + +  + F     +  + + A    YN D
Sbjct: 500 KLDTAWDIL--IRFAGKDVVSWTTMIAGYTQYNFD 532



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 186/387 (48%), Gaps = 12/387 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+      + ++L+AC    +L  G+++H  ++K  +    Y+   L+  Y    
Sbjct: 238 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 297

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A  +F  M +R+ V++  +I+  SQ  +  +A+ LF RM     EP+  T A+++ 
Sbjct: 298 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 357

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+       G+Q+H+   K  F S+  +  +LL++YAK   I  A   F      +VV 
Sbjct: 358 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 417

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++  Y  L     +  +FR++Q+E ++ N  TY S+L     L  L  G+Q+HS ++
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +  F++ +YV   + LIDMY+K G L  +  +    + + V+SW  M+ GY+++    + 
Sbjct: 478 KTNFQLNAYVC--SVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 535

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +  F  M +   ++ D V     +S C+       G  +  +   C  GF  ++     +
Sbjct: 536 LTTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEGQQIHAQA--CVSGFSSDLPFQNAL 592

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAA 432
           V +  R G++ E+      + FE T A
Sbjct: 593 VTLYSRCGKIEESY-----LAFEQTEA 614



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           +N +  +  + M   G++     + + + A      ++ G++VHA + KT Y     +  
Sbjct: 632 NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 691

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            LI  Y KC  +SDA K F E+  +N VSW A+I+AYS+     EAL+ F +M+ S+  P
Sbjct: 692 ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 751

Query: 158 NEFTFATVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           N  T   VL++C+       G   FE     + L  K   E ++ V    +DM  +AG +
Sbjct: 752 NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP--EHYVCV----VDMLTRAGLL 805

Query: 211 HEARGVFECLP 221
             A+   + +P
Sbjct: 806 SRAKEFIQEMP 816


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 356/579 (61%), Gaps = 7/579 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL      Y  L+  C++ R +  G  +  H+    ++P ++L   LI  Y K   L+DA
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            ++FD+M +RNV+SWT MISAYS+     +AL L + MLR    PN +T+++VL +C G 
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGM 127

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
               +   +H  IIK   ES +YV S+L+D++AK G   +A  VF+ +   D +   +II
Sbjct: 128 SDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 184

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            G+AQ    + A+ELF++++  G I+   T  SVL A +GLA L  G Q H H+++++  
Sbjct: 185 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD-- 242

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             ++L N+L+DMY KCGSL  +RRVF+ M ER VI+W+ M+ G +++G  +E ++LF LM
Sbjct: 243 QDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELM 302

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           +     KP+ +T + VL  CSH G+ + G   F  +     G  P  EHYGC++D+LG+A
Sbjct: 303 KSSG-TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY-GINPGREHYGCMIDLLGKA 360

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G++ +A++ +  M  EP A    +LLGACRV  N+ + E+  ++++ ++PE+AG Y +LS
Sbjct: 361 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLS 420

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YA++ +W+ V  +R+ M++  + K+PG SWIE+++ +H F   D SHP   E++ K+ 
Sbjct: 421 NIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLN 480

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           QL  +    GYVP+ + VL D++ EQ E  L  HSEKLAL FGL+  P    IR+ KNLR
Sbjct: 481 QLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLR 540

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           IC DCH F K  SK+  R + +RD  R+HH  +G CSCG
Sbjct: 541 ICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 41/280 (14%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           LQ  G+ ++  TY+ ++       A+  G  +  H+        + L N LI+MY K   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           L  + ++FD M +R VISW  M+  YSK  + ++ +EL  LM  +  V+P+  TY +VL 
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDG-VRPNVYTYSSVLR 122

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG----------------- 413
            C+  GM D  + + H  +  K+G E ++     ++D+  + G                 
Sbjct: 123 ACN--GMSD--VRMLHCGI-IKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDA 177

Query: 414 --------------RVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
                         R   ALE  K M    F    A L S+L AC     +++G      
Sbjct: 178 IVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVH 237

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           +++ + +   N   L ++Y   G  ED  RV   MKE+ V
Sbjct: 238 IVKYDQDLILNNA-LVDMYCKCGSLEDARRVFNQMKERDV 276


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/644 (38%), Positives = 381/644 (59%), Gaps = 19/644 (2%)

Query: 2   RRPK-KQSRAFSSLTFTQQQLTVPSFPPNPQNL-KTLCSNGQLTKALIEMATLGLEMRFE 59
           RRP+  + R F+SL       +    P N  +L + LC++G+L +A   +  L    +  
Sbjct: 195 RRPRLSRLRCFASLAPASSGAS----PANDDHLIQMLCAHGRLAQATALLQGLPAPTQ-R 249

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
            Y++LL A    R       VH  +     +R   +L TRLI  Y     L  AR++FDE
Sbjct: 250 TYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDE 309

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
              +N+  W AM+ A +   H  EAL     M R     + +++A  L +C  A    L 
Sbjct: 310 APVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLP 369

Query: 179 -----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
                +++H+  I+  +  H +V ++L+D YAK G +  A  VF  +P+R++VS +A+I 
Sbjct: 370 ASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIG 429

Query: 234 GYAQLGLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
            YA+     +AI++F+++      ++ N +T  SVL A +G+ ALG GK +H+++LR   
Sbjct: 430 CYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGF 489

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHGMGREVVELFN 350
              V + N+L+ MY KCG L   R +F+ +  R  V+SWN+++ GY  HG GRE +++F 
Sbjct: 490 DLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFE 549

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M EE  + P+ +T+++VL  CSH G+ ++G  +F  +V+      P  EHY C+VD+LG
Sbjct: 550 EMIEEG-ISPNIITFVSVLGACSHVGLVEQGKKLFESMVEYN--VTPRAEHYACMVDLLG 606

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           RAGR+ EA+E I++M  +P+  + GSLLGACR+H +V+  E     L ++EP NAGNYV+
Sbjct: 607 RAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVL 666

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           L+++YA A     V  ++EL++E A+ K PG SWIE+ + L++F + D  +P  EEL A 
Sbjct: 667 LADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQAL 726

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           + +   + K  GYVPD   VLYD++EE+KE++LLGHSEKLA+ FGLI T  G  IR+ KN
Sbjct: 727 IGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKN 786

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH+  KF+SK   R++ +RD NRFHH   G CSC DYW
Sbjct: 787 LRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 362/619 (58%), Gaps = 33/619 (5%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +EM   G++     +  L         L  G+++H H++K   +  V++ T L+  Y  C
Sbjct: 107 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 166

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             L  AR +FD   + +V++W  +ISAY++     E+  LF+ M      P   T   VL
Sbjct: 167 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 226

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++C+       GK++HS +     ES++ + ++++DMYA  G +  A G+F  +  RD++
Sbjct: 227 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 286

Query: 227 SCTAIISGYAQLG-LD------------------------------EEAIELFRKLQVEG 255
           S T I+SG+  LG +D                              +EA+ELFR +Q   
Sbjct: 287 SWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN 346

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  +  T  SVLTA + L AL  G+ + +++ R +I + + ++N+LIDMY KCG +  + 
Sbjct: 347 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 406

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            +F  MS+R   +W AM+VG + +G G + +++F+ M + + + PD +TY+ VLS C+H 
Sbjct: 407 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS-ILPDEITYIGVLSACTHT 465

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D+G   F  +   + G EP I HYGC+VD+L RAGR+ EA E I+NMP +  + + G
Sbjct: 466 GLVDKGRKYFLRMTS-QHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 524

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LL  CRV+   D+ E V ++++E+EP+N   YV+L N+YA+  RW D+  +R++M +K 
Sbjct: 525 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 584

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG S IE++  +H F A DRSHP  + + AK+ +++   K AGY PD+S V  D+ 
Sbjct: 585 IKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIA 644

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE KE  +  HSEKLA+ FGLI +P G  IR+ KNLR+C+DCHN AK VSKVY R+V +R
Sbjct: 645 EEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVR 704

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D+ RFHH   G CSC DYW
Sbjct: 705 DRTRFHHFKHGLCSCKDYW 723


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 361/571 (63%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L  C  ++ L  G+  HA ++    +  +     LI  Y+KC  +  AR++FDEM  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSW  MI + +Q     EAL+L ++M R  T  +EFT ++VL +CA        + +H+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             IK+  + +++V ++LLD+YAK G + +A  VFE +P+R VV+ +++ +GY Q  + E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LFRK    G+  +    +SV+ A +GLAA+  GKQ+++ + +    S + + +SLID
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLID 309

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  S +VF ++ +R V+ WNAM+ G S+H    EV+ LF  M++   + P+ V
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG-LSPNDV 368

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+++VLS C H G+  +G   F +++  +    P + HY C+VD L RAG++ EA + I 
Sbjct: 369 TFVSVLSACGHMGLVRKGQKYF-DLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLIS 427

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            +PF  +A++ GSLL +CR H N+++ E   ++L +IEP N+GNY++LSN+YA+ G+W++
Sbjct: 428 KLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDE 487

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V ++R+L+KE  V K+ G+SWIE+   +H F   +R+HP   E+ +K+ ++  + ++ GY
Sbjct: 488 VAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGY 547

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
             +    L+ V E  K+++L  HSEKLA T GL+  P  APIR++KNLRIC DCH+F K 
Sbjct: 548 KVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKL 607

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            SK + R V +RD NRFHH   G CSCGD+W
Sbjct: 608 ASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 13/315 (4%)

Query: 35  TLCSNGQLTKALIEMATLGLEMR-----FEEY--DTLLNACVNQRTLRGGQRVHAHMIKT 87
           +L  NG+  +AL     L L+M+     F E+   ++L AC  +  L   Q +HA  IK 
Sbjct: 139 SLTQNGEENEAL----DLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKA 194

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
                V++ T L+  Y KC  + DA  +F+ M +R+VV+W++M + Y Q     +AL LF
Sbjct: 195 AMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALF 254

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +   +  + ++F  ++V+ +CAG      GKQ+++L+ KS F S+I+V SSL+DMYAK 
Sbjct: 255 RKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKC 314

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G I E+  VF  + +R+VV   A+ISG ++     E + LF K+Q  G+  N VT+ SVL
Sbjct: 315 GGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVL 374

Query: 268 TALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           +A   +  +  G++    + +   +   V   + ++D  S+ G +  +  +   +     
Sbjct: 375 SACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNAS 434

Query: 327 IS-WNAMLVGYSKHG 340
            S W ++L     HG
Sbjct: 435 ASMWGSLLASCRTHG 449


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 359/580 (61%), Gaps = 3/580 (0%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           +M  E YD L++AC+  +++RG ++V  +MI +   P  YLR R+++ + KC  + DAR+
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM E+N++SW  +I         FEA  LF+ M +  ++     F T++ + AG   
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGL 247

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
              G+Q+HS  +K+     ++V  +L+DMY+K G I +A+ VF+ +PE+  V   +II+G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           YA  G  EEA+ ++ +++  G+  +  T++ ++   + LA+L H KQ H+ ++R      
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           +V   +L+D+YSK G +  ++ VFD M  + VISWNA++ GY  HG G E VE+F  M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  V P+ VT+LAVLS CS+ G+ DRG  +F E +      +P   HY C++++LGR G 
Sbjct: 428 EGMV-PNHVTFLAVLSACSYSGLSDRGWEIF-ESMSRDHKIKPRAMHYACMIELLGREGL 485

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA   IK+ PF+PT  +  +LL ACRVH N ++G+F  ++L  + PE   NYV+L N+
Sbjct: 486 LDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           Y  +GR E+   V + +K + +   P  SWIE+ +  + F + D+ H   +E+  K+ +L
Sbjct: 546 YNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDEL 605

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
            ++  + GYVP    +L DVD EQ+E+VLL HSEKLA+ FGLI T +  P++++++ RIC
Sbjct: 606 MLEISKHGYVPQXKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRIC 664

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH+  K ++ V  R++ +RD +RFHH  +G+CSCGDYW
Sbjct: 665 GDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+++    +  ++  C    +L   ++ HA +++  +   +   T L+  Y+K  
Sbjct: 323 EMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA+ +FD M  +NV+SW A+I+ Y       EA+ +F RML     PN  TF  VL+
Sbjct: 383 RIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLS 442

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +C+ +   + G +I  S+      +      + ++++  + G + EA  + +  P +  V
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502

Query: 227 SCTAII 232
           +  A +
Sbjct: 503 NMWAAL 508


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 362/619 (58%), Gaps = 33/619 (5%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +EM   G++     +  L         L  G+++H H++K   +  V++ T L+  Y  C
Sbjct: 128 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 187

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             L  AR +FD   + +V++W  +ISAY++     E+  LF+ M      P   T   VL
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 247

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++C+       GK++HS +     ES++ + ++++DMYA  G +  A G+F  +  RD++
Sbjct: 248 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 307

Query: 227 SCTAIISGYAQLG-LD------------------------------EEAIELFRKLQVEG 255
           S T I+SG+  LG +D                              +EA+ELFR +Q   
Sbjct: 308 SWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN 367

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  +  T  SVLTA + L AL  G+ + +++ R +I + + ++N+LIDMY KCG +  + 
Sbjct: 368 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 427

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            +F  MS+R   +W AM+VG + +G G + +++F+ M + + + PD +TY+ VLS C+H 
Sbjct: 428 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKAS-ILPDEITYIGVLSACTHT 486

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D+G   F  +   + G EP I HYGC+VD+L RAGR+ EA E I+NMP +  + + G
Sbjct: 487 GLVDKGRKYFLRMTS-QHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 545

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LL  CRV+   D+ E V ++++E+EP+N   YV+L N+YA+  RW D+  +R++M +K 
Sbjct: 546 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 605

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG S IE++  +H F A DRSHP  + + AK+ +++   K AGY PD+S V  D+ 
Sbjct: 606 IKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIA 665

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE KE  +  HSEKLA+ FGLI +P G  IR+ KNLR+C+DCHN AK VSKVY R+V +R
Sbjct: 666 EEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVR 725

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D+ RFHH   G CSC DYW
Sbjct: 726 DRTRFHHFKHGLCSCKDYW 744


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/657 (36%), Positives = 378/657 (57%), Gaps = 41/657 (6%)

Query: 16  FTQQQLTVPSFPPNPQN-------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNAC 68
           +  + LT   F  NP +          LCS G L +A    ++  +      +  LL +C
Sbjct: 4   YCLRPLTRRHFSTNPSSGSELTAEFTNLCSKGHLKQAFDRFSS-HIWSEPSLFSHLLQSC 62

Query: 69  VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA---------------- 112
           +++ +L  G+++H+ +I +      ++   L+  Y+KC  L  A                
Sbjct: 63  ISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCN 122

Query: 113 ---------------RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
                          RKMFDEM ERNV +W AM++   Q   + E L LF RM      P
Sbjct: 123 ILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLP 182

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           +EF   +VL  CAG      G+Q+H  + K  FE ++ V SSL  MY K G + E   + 
Sbjct: 183 DEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLI 242

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
             +P ++VV+   +I+G AQ G  EE ++ +  +++ G   + +T+ SV+++ S LA LG
Sbjct: 243 RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLG 302

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+Q+H+ V++      V + +SLI MYS+CG L YS +VF       V+ W++M+  Y 
Sbjct: 303 QGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYG 362

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG G E ++LFN M +E K++ + VT+L++L  CSH G++++G+  F  +V+ K G +P
Sbjct: 363 FHGRGVEAIDLFNQMEQE-KLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVE-KYGVKP 420

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            +EHY C+VD+LGR G V EA   I++MP +       +LL AC++H   ++   + + +
Sbjct: 421 RLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEV 480

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
             ++P +   YV+LSN++AS  RW+DV+ VR+ M+++ + K+PG SW+E+   +H F   
Sbjct: 481 FRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMG 540

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D+SHP   E+++ +++L+ + K+ GYVPD+  VL+D+D E KE  L+ HSEKLA+ F L+
Sbjct: 541 DKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALL 600

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TP G PIRVIKNLR+C DCH   K++S++  R++ +RD +RFHH   G CSCGDYW
Sbjct: 601 YTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/536 (42%), Positives = 340/536 (63%), Gaps = 10/536 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   + +AR++FDE    +V +WTAM+S Y Q     EA  LF RM     E N
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERN 306

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  +L         E+ K++  ++   N    +   ++++  YA+ G+I EA+ +F+
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPCRN----VSTWNTMITGYAQCGKISEAKNLFD 362

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD VS  A+I+GY+Q G   EA+ LF  ++ EG   N  +++S L+  + + AL  
Sbjct: 363 KMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALEL 422

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H  +++    +   + N+L+ MY KCGS+  +  +F  M+ + ++SWN M+ GYS+
Sbjct: 423 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 482

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G E +  F  M+ E  +KPD  T +AVLS CSH G+ D+G   FH +     G  P 
Sbjct: 483 HGFGEEALRFFESMKREG-LKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQ-DYGVRPN 540

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            +HY C+VD+LGRAG + EA   +KNMPFEP AAI G+LLGA RVH N ++ E    ++ 
Sbjct: 541 SQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 600

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            +EPEN+G YV+LSNLYAS+GRW DV ++R  M++K V K PG SWIE+    HTF   D
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 660

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP ++E+ A ++ L ++ K+AGYV   S VL+DV+EE+KE+++  HSE+LA+ +G++ 
Sbjct: 661 EFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMR 720

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              G PIRVIKNLR+C DCHN  K+++KV GR + LRD NRFHH  +G+CSCGDYW
Sbjct: 721 VSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 184/382 (48%), Gaps = 42/382 (10%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y +  C+ DAR++FD M E+N VSW A++SAY Q +   EA  LF          +   +
Sbjct: 162 YAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF---------GSRENW 212

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFES----HIYVGSSLLDMYAKAGRIHEARGVFE 218
           A V  +C    GF   K+I  +  +  F+S     +   ++++  YA+ G I EAR +F+
Sbjct: 213 ALVSWNCLLG-GFVKKKKI--VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             P  DV + TA++SGY Q  + EEA ELF ++       N V++ ++      LA    
Sbjct: 270 ESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAM------LAGYVQ 319

Query: 279 GKQVHSHVLRFEIPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G++V      F++     V   N++I  Y++CG ++ ++ +FD M +R  +SW AM+ GY
Sbjct: 320 GERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY 379

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           S+ G   E + LF LM  E   + +  ++ + LS C+     + G  +   +V  K G+E
Sbjct: 380 SQSGHSYEALRLFVLMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLV--KGGYE 436

Query: 397 PEIEHYGCVVD-----MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                 GC V      M  + G + EA +  K M  +   +    + G  R  +  +   
Sbjct: 437 T-----GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR 491

Query: 452 FVGQRLME-IEPENAGNYVILS 472
           F      E ++P++A    +LS
Sbjct: 492 FFESMKREGLKPDDATMVAVLS 513



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 72/316 (22%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA----------------------- 129
           V+  T ++  Y +   + +AR++FD M ERN VSW A                       
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPC 335

Query: 130 --------MISAYSQKAHSFEALNLFIRMLRSDT-------------------------- 155
                   MI+ Y+Q     EA NLF +M + D                           
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 156 -----EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                  N  +F++ L++CA     ELGKQ+H  ++K  +E+  +VG++LL MY K G I
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EA  +F+ +  +D+VS   +I+GY++ G  EEA+  F  ++ EG+  +  T  +VL+A 
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMS-ER 324
           S    +  G+Q + H +      Y V  NS     ++D+  + G L  +  +  NM  E 
Sbjct: 516 SHTGLVDKGRQ-YFHTM---TQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEP 571

Query: 325 TVISWNAMLVGYSKHG 340
               W  +L     HG
Sbjct: 572 DAAIWGTLLGASRVHG 587



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 62/317 (19%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           AR +FDEM ER++VSW  MI  Y +  +  +A  LF RM   D              C+ 
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV-------------CSW 155

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                                     +++L  YA+ G + +AR VF+ +PE++ VS  A+
Sbjct: 156 --------------------------NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNAL 189

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNY--VTYASVLTALSGLAALGHGKQVHSHVLRF 289
           +S Y Q    EEA  LF      G   N+  V++  +L        +   +Q    +   
Sbjct: 190 LSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR 243

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           ++ S+    N++I  Y++ G +  +R++FD      V +W AM+ GY ++ M  E  ELF
Sbjct: 244 DVVSW----NTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF 299

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           + M E N+     V++ A+L+G   G   +    +F +++ C++     +  +  ++   
Sbjct: 300 DRMPERNE-----VSWNAMLAGYVQGERVEMAKELF-DVMPCRN-----VSTWNTMITGY 348

Query: 410 GRAGRVGEALEFIKNMP 426
            + G++ EA      MP
Sbjct: 349 AQCGKISEAKNLFDKMP 365



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  + M   G  +    + + L+ C +   L  G+++H  ++K  Y    ++   L++ Y
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 449

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + +A  +F EM  +++VSW  MI+ YS+     EAL  F  M R   +P++ T  
Sbjct: 450 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMV 509

Query: 164 TVLTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VL++C+     + G+Q  H++        +    + ++D+  +AG + EA  + + +P
Sbjct: 510 AVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMP 568



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 31/253 (12%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +S I   +  +  Y + GR  EA  VF+ +P    VS  A+ISGY + G  E A  LF +
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +    ++S  V     +   +    LG  +++   +   ++ S+    N+++  Y++ G 
Sbjct: 116 MPERDLVSWNVMIKGYVRNRN----LGKARELFERMPERDVCSW----NTILSGYAQNGC 167

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +RRVFD M E+  +SWNA+L  Y ++    E   LF     EN        +  V  
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFG--SREN--------WALVSW 217

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEP----EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            C  GG   +      +IV+ +  F+     ++  +  ++    + G + EA +     P
Sbjct: 218 NCLLGGFVKK-----KKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESP 272

Query: 427 ----FEPTAAILG 435
               F  TA + G
Sbjct: 273 VHDVFTWTAMVSG 285


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 372/606 (61%), Gaps = 6/606 (0%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           ++   SNG   K+L+   EM   G       Y  +L AC +   +  G+RVH+ ++    
Sbjct: 133 IRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGL 192

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +Y+   L+  Y K   +  AR +FD M ER++ SW  MIS Y++ A S  A  +F  
Sbjct: 193 ESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDL 252

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAG 208
           M ++    +  T   +L++CA     + GK IH   ++++  ++  +  +SL++MY    
Sbjct: 253 MGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCN 312

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            + +AR +FE +  +D VS  ++I GYA+ G   E++ LFR++ ++G   + VT+ +VL 
Sbjct: 313 CMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLG 372

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A   +AAL +G  +HS++++    +  ++  +L+DMYSKCGSL  SRRVFD M +++++S
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS 432

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W+AM+ GY  HG GRE + + + M+  N V PD+  + ++LS CSH G+   G  +F+++
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKA-NSVIPDNGVFTSILSACSHAGLVVEGKEIFYKM 491

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + +   +P + HY C+VD+LGRAG + EA   I+ M  +PT+ I  +LL A R+H N+ 
Sbjct: 492 -EKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIK 550

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E   Q++ ++ P+   +Y+ LSN+YA+  RW+DV RVR +++ K + K PG S+IELD
Sbjct: 551 LAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELD 610

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            ++H F   D+SH   E++ AK+ +L  + KEAGY PD S V YDV+EE KEK+L  HSE
Sbjct: 611 NMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSE 670

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           +LA+ F LI T  G  IR+ KNLR+C DCH   K +S++ GR++ +RD +RFHH ++G C
Sbjct: 671 RLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFC 730

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 731 SCGDYW 736



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 5/366 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            LL +  N ++ + GQ++HAHMI  +      YL T+L  FY  C  +S A  +FD +  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           +N   W  MI  Y+      ++L L+  ML      + FT+  VL +C      E+G+++
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           HS ++    ES IYVG+SLL MYAK G +  AR VF+ + ERD+ S   +ISGYA+    
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNS 300
             A  +F  +   G+ ++  T   +L+A + L A+  GK +H + +R  I +Y     NS
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI+MY  C  +  +RR+F+ +  +  +SWN+M++GY+++G   E + LF  M  +    P
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS-GP 362

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D VT++AVL  C        G+++   +V  K GF+        +VDM  + G +  +  
Sbjct: 363 DQVTFIAVLGACDQIAALRYGMSIHSYLV--KKGFDANTIVGTALVDMYSKCGSLACSRR 420

Query: 421 FIKNMP 426
               MP
Sbjct: 421 VFDEMP 426


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 357/573 (62%), Gaps = 5/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  + R LR G  VH ++++  +   V + T L+  Y+KC  +S AR +FD M  R
Sbjct: 136 SILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHR 195

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW +MI  Y Q   +  A+ +F +ML    +P   T    L +CA     E GK +H
Sbjct: 196 TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH 255

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+ +   +S + V +SL+ MY+K  R+  A  +F+ L  + +VS  A+I GYAQ G   
Sbjct: 256 KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVN 315

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  F ++Q   +  +  T  SV+ AL+ L+     K +H  V+R  +   V +  +L+
Sbjct: 316 EALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALV 375

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG++  +R++FD M+ R VI+WNAM+ GY  HG+G+  VELF  M+ +  +KP+ 
Sbjct: 376 DMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMK-KGTIKPND 434

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           +T+L  LS CSH G+ + GL  F  +   KD G EP ++HYG +VD+LGRAGR+ +A +F
Sbjct: 435 ITFLCALSACSHSGLVEEGLCFFESMK--KDYGIEPTMDHYGAMVDLLGRAGRLNQAWDF 492

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+ MP +P   + G++LGAC++H NVD+GE     + ++ P++ G +V+L+N+YA+A  W
Sbjct: 493 IQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMW 552

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
             V +VR +M++  + K PG S +E+   +H+F++   SHP  +++ + ++ L  + + A
Sbjct: 553 GKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAA 612

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD + + +DV+++ K ++L  HSEKLA+ FGL+ T  G PI + KNLR+C DCHN  
Sbjct: 613 GYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNAT 671

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++S V GR++ +RD +RFH   +G CSCGDYW
Sbjct: 672 KYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 176/310 (56%), Gaps = 1/310 (0%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
            +  LL  C +   L+ G+ +H  +I + +   ++  T ++  Y KC  ++DA  MFD M
Sbjct: 32  NFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRM 91

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ER++V W  MIS Y+Q   +  AL L +RM      P+  T  ++L + A      +G 
Sbjct: 92  PERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGM 151

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H  ++++ FES + V ++L+DMY+K G +  AR +F+ +  R VVS  ++I GY Q G
Sbjct: 152 AVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSG 211

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E A+ +F+K+  EG+    VT    L A + L  L  GK VH  V + ++ S V + N
Sbjct: 212 DAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMN 271

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLI MYSKC  +  +  +F N+  +T++SWNAM++GY+++G   E +  F  M+  N +K
Sbjct: 272 SLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRN-IK 330

Query: 360 PDSVTYLAVL 369
           PDS T ++V+
Sbjct: 331 PDSFTMVSVI 340



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 179/339 (52%), Gaps = 10/339 (2%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           M+  Y++ +    AL+ F RM      P  + F  +L  C      + GK+IH  +I S 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F  +++  + +++MYAK  +I++A  +F+ +PERD+V    +ISGYAQ G  + A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++  EG   + +T  S+L A++    L  G  VH +VLR    S V +  +L+DMYSKCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S++ +R +FD M  RTV+SWN+M+ GY + G     + +F  M +E  V+P +VT +  L
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG-VQPTNVTVMGAL 239

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             C+  G  +RG  V H++VD +   + ++     ++ M  +  RV  A +  KN+  + 
Sbjct: 240 HACADLGDLERGKFV-HKLVD-QLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297

Query: 430 ----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
                A ILG     C    N  +  F   +   I+P++
Sbjct: 298 LVSWNAMILGYAQNGC---VNEALNAFCEMQSRNIKPDS 333


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 377/638 (59%), Gaps = 68/638 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD----- 117
            +L++C   +TL  G+++H+ ++K      V + T L+  Y KC     A+ +FD     
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 118 --------------------------EMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                                     +M +R++VSW +MIS YSQ+ ++ EAL +F +ML
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKML 266

Query: 152 RSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG-- 208
              + +P+ FT A++L++CA      +GKQIH+ I+++  E+   VG++L+ MYAK+G  
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 209 -------------------------------RIHEARGVFECLPERDVVSCTAIISGYAQ 237
                                           +  AR +F  L +RDVV+ TA+I GY Q
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL  +A+ELFR +  EG   N  T A++L+  S L  L HGKQ+H+  ++    S   +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 298 QNSLIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
            N+LI MY+K G++  ++RVFD    ++ ++SW +M++  ++HG+G+E + LF  M    
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            +KPD +TY+ VLS C+H G+ ++G   ++ + +  +  EP + HY C++D+ GRAG + 
Sbjct: 507 -MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE-IEPTLSHYACMIDLYGRAGLLQ 564

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA  FI++MP EP     GSLL +C++H N D+ +   +RL+ I+P N+G Y+ L+N+Y+
Sbjct: 565 EAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYS 624

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           + G+WE+  + R+LMK++ V K+ G SWI +   +H F   D  HP ++E+   + ++  
Sbjct: 625 ACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWE 684

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + K+ G++PD   VL+D++EE KE++L  HSEKLA+ FGL+ TPE   +R++KNLR+C D
Sbjct: 685 EIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCND 744

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+  KF+SK+ GR++ +RD  RFHH  +G+CSC DYW
Sbjct: 745 CHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 209/457 (45%), Gaps = 101/457 (22%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E +  +L   V  +    G+ VH  +IK      VYL   L+ FY K   L  A  +FDE
Sbjct: 11  EFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 119 MRERNVVSWTAMISAYSQKAHSFE--------------------------------ALNL 146
           M  ++  SW  +IS Y+++ + FE                                A+ +
Sbjct: 71  MPLKSTFSWNTLISGYAKQGN-FEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWM 129

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F +M+     P++FT + VL+SCA     ++G++IHS ++K    S + V +SLL+MYAK
Sbjct: 130 FAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAK 189

Query: 207 -------------------------------AGRIHEARGVFECLPERDVVSCTAIISGY 235
                                          +G+   A   FE +P+RD+VS  ++ISGY
Sbjct: 190 CGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY 249

Query: 236 AQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR------ 288
           +Q G + EA+ +F K+  E  +  +  T AS+L+A + L  L  GKQ+H+++LR      
Sbjct: 250 SQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 289 ----------------FEIPSYVVLQN-----------SLIDMYSKCGSLTYSRRVFDNM 321
                            EI   +V  N           SL+D Y+K G++  +R +F+ +
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            +R V++W AM+VGY ++G+  + +ELF LM  E   +P+S T  A+LS  S   + + G
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP-EPNSYTLAAMLSVSSSLTILEHG 428

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             +    +   +   P + +   ++ M  + G +  A
Sbjct: 429 KQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA 463



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 174/344 (50%), Gaps = 12/344 (3%)

Query: 6   KQSRAFSSLTFTQQQLTVPSFPPNPQNLKTL---CSNGQLTKALIEMATLGLEMRFEEYD 62
           +Q     +L    + L  PS  P+   L ++   C+N +      ++    L    E   
Sbjct: 251 QQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSG 310

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPP---VYLRTRLIVFYNKCECLSDARKMFDEM 119
            + NA ++     GG  + A +I    R     +   T L+  Y K   +  AR++F+++
Sbjct: 311 AVGNALISMYAKSGGVEI-ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R+R+VV+WTAMI  Y Q     +AL LF  M+    EPN +T A +L+  +     E GK
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQ 237
           QIH+  IK+   S   V ++L+ MYAK G I+ A+ VF+ LP  ++++VS T++I   AQ
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQ 488

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVV 296
            GL +EAI LF ++   GM  +++TY  VL+A + +  +  G++ ++ +    EI   + 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
               +ID+Y + G L  +    ++M  E   I+W ++L     H
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIH 592


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 365/601 (60%), Gaps = 7/601 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG++ +AL    EM    + M      +LL  CV    +  G  +H + IK      +++
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y K   L  A  +F++M+ R++VSW ++++A+ Q      AL ++ +M     
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEAR 214
            P+  T  ++ +  A    F   + IH  + +  +  H I +G++++DMYAK G I  AR
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGL 273
            VFE LP +DV+S  ++I+GY+Q GL  EAI+++  ++   G + N  T+ S+LTA S L
Sbjct: 398 KVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQL 457

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            AL  G + H  +++  +   + +   L+DMY KCG L  +  +F  +  ++ +SWNA++
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
             +  HG G + V+LF  M+ E  VKPD +T++++LS CSH G+ D G   F +++    
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEG-VKPDHITFVSLLSACSHSGLVDEGQWCF-QLMQETY 575

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G  P ++HYGC+VD+ GRAG + +A  F+KNMP  P  ++ G+LLGACR+H NV++   V
Sbjct: 576 GIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTV 635

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
              L+++E EN G YV+LSN+YA  G WE V  VR L +++ + K PG S IE+D+ +  
Sbjct: 636 SDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDV 695

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F+  +++HP  EE+ ++++ L+ K K  GYVPD + VL DV++++KE +L  HSE+LA+ 
Sbjct: 696 FYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMA 755

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FG+I TP    +++ KNLR+C DCHN  KF+SK+  R++ +RD NRFHH  +G CSCGDY
Sbjct: 756 FGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDY 815

Query: 634 W 634
           W
Sbjct: 816 W 816



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 200/385 (51%), Gaps = 6/385 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           ++T  L+     +  ++ AC N   L  G++VH  ++K  +   VY+    I FY++   
Sbjct: 133 LSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGF 189

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S A  +FD M  R++ +W AMIS +       EAL +F  M       +  T +++L  
Sbjct: 190 VSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPI 249

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C        G  IH   IK   E  ++V ++L++MYAK G +  A  +F  +  RD+VS 
Sbjct: 250 CVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSW 309

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL- 287
            ++++ + Q      A+ ++ K+   G++ + +T  S+ +  + L      + +H  V  
Sbjct: 310 NSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTR 369

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R      + L N++IDMY+K G +  +R+VF+ +  + VISWN+++ GYS++G+  E ++
Sbjct: 370 RCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAID 429

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +++ MR  +   P+  T++++L+  S  G   +G+    +++  K+    +I    C+VD
Sbjct: 430 VYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLI--KNFLYFDIFVSTCLVD 487

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAA 432
           M G+ G++ +AL     +P + + +
Sbjct: 488 MYGKCGKLADALSLFYEVPHQSSVS 512



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 185/353 (52%), Gaps = 10/353 (2%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            +++HA ++ +     ++L  +LI  Y     +  AR  FD+++ ++V +W +MISAY++
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 137 KAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
             H   A++ F   L +   + + +TF  V+ +C      + G+++H L++K  FE  +Y
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG---NLDDGRKVHCLVLKLGFECDVY 175

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           + +S +  Y++ G +  A  +F+ +  RD+ +  A+ISG+   G   EA+E+F +++ + 
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  + VT +S+L     L  +  G  +H + ++  +   + + N+LI+MY+K G L  + 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            +F+ M  R ++SWN++L  + ++      + ++N M     V PD +T +++ S  +  
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIG-VVPDLLTLVSLASVAAEL 354

Query: 376 G--MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           G  +  R +   H  V  +  F  +I     ++DM  + G +  A +  + +P
Sbjct: 355 GNFLSSRSI---HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLP 404



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           + E  E  F  +   C       L KQ+H+L++ S     I++ + L++ YA  G I  A
Sbjct: 38  ENEKREIDFNRIFLYCTKV---HLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHA 94

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMISNYVTYASVLTALSG 272
           R  F+ +  +DV +  ++IS YA++G    A++ F + L    + S++ T+  V+ A   
Sbjct: 95  RLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN 154

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
              L  G++VH  VL+      V +  S I  YS+ G ++ +  +FDNM  R + +WNAM
Sbjct: 155 ---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAM 211

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + G+  +G   E +E+F+ MR ++ V  DSVT  ++L  C    ++D    V   +   K
Sbjct: 212 ISGFYLNGKVAEALEVFDEMRFKS-VSMDSVTISSLLPICVQ--LDDIISGVLIHVYAIK 268

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
            G E ++     +++M  + G +  A      M      +   SLL A
Sbjct: 269 LGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVS-WNSLLAA 315


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/624 (39%), Positives = 374/624 (59%), Gaps = 55/624 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC + + +   + VH + I+      V++   LI  Y KC  + +A K+F+ M  +
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 123 NVVSWTAM-----------------------------------ISAYSQKAHSFEALNLF 147
           +VVSW AM                                   I+ YSQ+  S EALN+F
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-------LIIKSNF---ESHIYVG 197
            +M+ S + PN  T  +VL++CA    F  G +IH+       L + ++F   +  + V 
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 198 SSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE- 254
           ++L+DMY+K      AR +F+ +P  ER+VV+ T +I G+AQ G   +A++LF ++  E 
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 255 -GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCGS 310
            G+  N  T + +L A + LAA+  GKQ+H++VLR   ++  +Y V  N LI+MYSKCG 
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV-ANCLINMYSKCGD 423

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R VFD+MS+++ ISW +M+ GY  HG G E +++F+ MR+   V PD +T+L VL 
Sbjct: 424 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV-PDDITFLVVLY 482

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D+GL+ F + +    G  P  EHY   +D+L R GR+ +A + +K+MP EPT
Sbjct: 483 ACSHCGMVDQGLSYF-DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPT 541

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A +  +LL ACRVH NV++ E    +L+E+  EN G+Y ++SN+YA+AGRW+DV R+R L
Sbjct: 542 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 601

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           MK+  + K PG SW++  +   +F   DRSHP+  ++ A ++ L  + K  GYVP+ +  
Sbjct: 602 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 661

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L+DVDEE+K  +L+ HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+   
Sbjct: 662 LHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDH 721

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ +RD +RFHH   G+CSCG YW
Sbjct: 722 EIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 202/424 (47%), Gaps = 67/424 (15%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           +L AC    + R G   H  +    +   V++   L+  Y++C  L +A  +FDE+ +R 
Sbjct: 16  VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 75

Query: 123 --NVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNE----FTFATVLTSCAGAFG 174
             +V+SW +++SA+ + ++++ AL+LF +M  +  +   NE     +   +L +C     
Sbjct: 76  IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 135

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------- 227
               K++H   I++     ++VG++L+D YAK G +  A  VF  +  +DVVS       
Sbjct: 136 VPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 195

Query: 228 ----------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                                        TA+I+GY+Q G   EA+ +FR++   G + N
Sbjct: 196 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 255

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY----------VVLQNSLIDMYSKCG 309
            VT  SVL+A + L A   G ++H++ L+  + +           +++ N+LIDMYSKC 
Sbjct: 256 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315

Query: 310 SLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYL 366
           S   +R +FD+  + ER V++W  M+ G++++G   + ++LF  ++ E   V P++ T  
Sbjct: 316 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 375

Query: 367 AVLSGCSH-----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +L  C+H      G +     + H   D    F        C+++M  + G V  A   
Sbjct: 376 CILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN-----CLINMYSKCGDVDTARHV 430

Query: 422 IKNM 425
             +M
Sbjct: 431 FDSM 434



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 139/249 (55%), Gaps = 10/249 (4%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR+ T  + FT   VL +C     +  G   H LI  + FES++++ ++L+ MY++ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 210 IHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQV------EGMISNY 260
           + EA  +F+ + +R   DV+S  +I+S + +      A++LF K+ +          S+ 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           ++  ++L A   L A+   K+VH + +R      V + N+LID Y+KCG +  + +VF+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  + V+SWNAM+ GYS+ G  +   ELF  MR+EN +  D VT+ AV++G S  G    
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKEN-IPLDMVTWTAVIAGYSQRGCSHE 239

Query: 381 GLAVFHEIV 389
            L VF +++
Sbjct: 240 ALNVFRQMI 248


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 359/580 (61%), Gaps = 3/580 (0%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           +M  E YD L++AC+  +++RG ++V  +MI +   P  YLR R+++ + KC  + DAR+
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM E+N++SW  +I         FEA  LF+ M +  ++     F T++ + AG   
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGL 247

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
              G+Q+HS  +K+     ++V  +L+DMY+K G I +A+ VF+ +PE+  V   +II+G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           YA  G  EEA+ ++ +++  G+  +  T++ ++   + LA+L H KQ H+ ++R      
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           +V   +L+D+YSK G +  ++ VFD M  + VISWNA++ GY  HG G E VE+F  M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  V P+ VT+LAVLS CS+ G+ DRG  +F E +      +P   HY C++++LGR G 
Sbjct: 428 EGMV-PNHVTFLAVLSACSYSGLSDRGWEIF-ESMSRDHKIKPRAMHYACMIELLGREGL 485

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA   IK+ PF+PT  +  +LL ACRVH N ++G+F  ++L  + PE   NYV+L N+
Sbjct: 486 LDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           Y  +GR E+   V + +K + +   P  SWIE+ +  + F + D+ H   +E+  K+ +L
Sbjct: 546 YNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDEL 605

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
            ++  + GYVP    +L DVD EQ+E+VLL HSEKLA+ FGLI T +  P++++++ RIC
Sbjct: 606 MLEISKHGYVPQDKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRIC 664

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH+  K ++ V  R++ +RD +RFHH  +G+CSCGDYW
Sbjct: 665 GDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+++    +  ++  C    +L   ++ HA +++  +   +   T L+  Y+K  
Sbjct: 323 EMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA+ +FD M  +NV+SW A+I+ Y       EA+ +F RML     PN  TF  VL+
Sbjct: 383 RIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLS 442

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +C+ +   + G +I  S+      +      + ++++  + G + EA  + +  P +  V
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGM----ISNYVTYASV 266
           +  A +    ++  + E +  F   ++ GM    +SNYV   ++
Sbjct: 503 NMWAALLTACRVHKNFE-LGKFAAEKLYGMGPEKLSNYVVLLNI 545


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 12/601 (1%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +A   M  L ++     +   + +C     L  G++ H   +   +   +++ + LI  Y
Sbjct: 68  RAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMY 127

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN----- 158
           +KC  LS+AR +FDE+  RN+V+WT++I+ Y Q   + EAL +F   L   +E N     
Sbjct: 128 SKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVG 187

Query: 159 ----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
                    +VL++C+      + + +H + IK   +  + V ++LLD YAK G +  +R
Sbjct: 188 TSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSR 247

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMISNYVTYASVLTALSGL 273
            VF+ + E+DVVS  ++I+ YAQ GL  +A E+F   L+  G   N VT +++L A +  
Sbjct: 248 KVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHE 307

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            AL  G  +H  V++    + V++  S+IDMY KCG    +R  FD M E+ V SW AM+
Sbjct: 308 GALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMI 367

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY  HG  RE +++F  M     VKP+ +T+++VL+ CSH G  + G   F+ +   + 
Sbjct: 368 AGYGMHGFAREALDVFYQMIWAG-VKPNYITFISVLAACSHAGFLEEGWRWFNAMSH-EY 425

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
             EP +EHYGC+VD+LGRAG + EA   IK+M       + GSLL ACR+H +V++ E  
Sbjct: 426 NVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEIS 485

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            + L +++P N G YV+L+N+YA AGRW+DV R+R L+K++ + K PG S +EL   +H 
Sbjct: 486 ARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHV 545

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F   D+ HP  E++   +++LSVK +EAGYVP+M+ VL+DVDEE+KE ++  HSEKLA+ 
Sbjct: 546 FLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVA 605

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FG++ +  G+ I VIKNLR+C DCH   K +SK+  R++ +RD  RFHH  +G CSCGDY
Sbjct: 606 FGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDY 665

Query: 634 W 634
           W
Sbjct: 666 W 666



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 176/310 (56%), Gaps = 12/310 (3%)

Query: 115 MFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           +F++  +R +V SW ++I+  ++   S E+L  F  M + D +PN  TF   + SC+  F
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
               GKQ H   +   FES ++V S+L+DMY+K G++  AR +F+ +P R++V+ T++I+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 234 GYAQLGLDEEAIELFRKLQVE---------GMISNYVTYASVLTALSGLAALGHGKQVHS 284
           GY Q     EA+ +F++   E         G   + V   SVL+A S ++     + VH 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
             ++  +   + ++N+L+D Y+KCG ++ SR+VFD+M+E+ V+SWN+M+  Y+++G+  +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
             E+F+ M +    K + VT   +L  C+H G    G+ +  +++  K G+   +     
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVI--KMGYVNNVIMATS 334

Query: 405 VVDMLGRAGR 414
           ++DM  + G+
Sbjct: 335 IIDMYCKCGQ 344


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/640 (39%), Positives = 385/640 (60%), Gaps = 21/640 (3%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKAL--IEM---ATLGLEMRFEEYDTLLN 66
           +++T T    T+     +   LK+L  +G+L +AL  IE     +       E     L+
Sbjct: 17  TNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIEYWPSKSPATAPDVEACALFLH 76

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYR-------PPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +C++++ L  GQR++  ++    R        P  L+ +LI  ++ C  + +AR++F++ 
Sbjct: 77  SCISRKALEHGQRLYLQLLLYRDRCNHNLLNNPT-LKGKLITLFSVCRRVDEARRVFEDG 135

Query: 120 RERNVVS---WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            E   +    W AM   YS+  +  EAL L+  M+    +   F F+  L +C+     +
Sbjct: 136 GEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQ 195

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+ +H+ ++K+  +    V ++LL +Y++ G   EA  VF+ +P R+VVS  ++I+G  
Sbjct: 196 TGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLV 255

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     EAIE FR +Q +GM  ++VT  ++L   + + ALG GK++H+ +++        
Sbjct: 256 KKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAP 315

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + NSL+DMY+KCG++ Y RRVF+ M  + + SWN ++ GY+ +G   E +E F  M    
Sbjct: 316 VLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSG 375

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
              PD +T++A+LSGCSH G+ D G  +F E++    G  P +EHY C+VD+LGRAGR+ 
Sbjct: 376 -FSPDGITFIALLSGCSHAGLADDGCRLF-EMMKMDYGISPTVEHYACLVDVLGRAGRIK 433

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EALE +KNMPF+PT +I GSLL +CR+H NV + E V +RL E+EP NAGNYV+LSN+YA
Sbjct: 434 EALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYA 493

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK--VKQL 534
           +AG WE V  VRE M+++ +TK+ G SW+++   +HTF A   S+  R  +  K   K+L
Sbjct: 494 NAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGG-SNEFRNSVEYKKVWKRL 552

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
               +E GYVPD   VL+DV EE +   + GHSE+LA  F LI T  G PIR+ KNLR+C
Sbjct: 553 MEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVC 612

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VDCH++ K +SKV GR + LRD NRFHH  +G CSC DYW
Sbjct: 613 VDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/624 (39%), Positives = 374/624 (59%), Gaps = 55/624 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC + + +   + VH + I+      V++   LI  Y KC  + +A K+F+ M  +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 123 NVVSWTAM-----------------------------------ISAYSQKAHSFEALNLF 147
           +VVSW AM                                   I+ YSQ+  S EALN+F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-------LIIKSNF---ESHIYVG 197
            +M+ S + PN  T  +VL++CA    F  G +IH+       L + ++F   +  + V 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 198 SSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE- 254
           ++L+DMY+K      AR +F+ +P  ER+VV+ T +I G+AQ G   +A++LF ++  E 
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 255 -GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCGS 310
            G+  N  T + +L A + LAA+  GKQ+H++VLR   ++  +Y V  N LI+MYSKCG 
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV-ANCLINMYSKCGD 530

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R VFD+MS+++ ISW +M+ GY  HG G E +++F+ MR+   V PD +T+L VL 
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV-PDDITFLVVLY 589

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH GM D+GL+ F + +    G  P  EHY   +D+L R GR+ +A + +K+MP EPT
Sbjct: 590 ACSHCGMVDQGLSYF-DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPT 648

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A +  +LL ACRVH NV++ E    +L+E+  EN G+Y ++SN+YA+AGRW+DV R+R L
Sbjct: 649 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 708

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           MK+  + K PG SW++  +   +F   DRSHP+  ++ A ++ L  + K  GYVP+ +  
Sbjct: 709 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 768

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L+DVDEE+K  +L+ HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+   
Sbjct: 769 LHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDH 828

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ +RD +RFHH   G+CSCG YW
Sbjct: 829 EIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 202/424 (47%), Gaps = 67/424 (15%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           +L AC    + R G   H  +    +   V++   L+  Y++C  L +A  +FDE+ +R 
Sbjct: 123 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 182

Query: 123 --NVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNE----FTFATVLTSCAGAFG 174
             +V+SW +++SA+ + ++++ AL+LF +M  +  +   NE     +   +L +C     
Sbjct: 183 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 242

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------- 227
               K++H   I++     ++VG++L+D YAK G +  A  VF  +  +DVVS       
Sbjct: 243 VPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 302

Query: 228 ----------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                                        TA+I+GY+Q G   EA+ +FR++   G + N
Sbjct: 303 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 362

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY----------VVLQNSLIDMYSKCG 309
            VT  SVL+A + L A   G ++H++ L+  + +           +++ N+LIDMYSKC 
Sbjct: 363 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422

Query: 310 SLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYL 366
           S   +R +FD+  + ER V++W  M+ G++++G   + ++LF  ++ E   V P++ T  
Sbjct: 423 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 482

Query: 367 AVLSGCSH-----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +L  C+H      G +     + H   D    F        C+++M  + G V  A   
Sbjct: 483 CILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN-----CLINMYSKCGDVDTARHV 537

Query: 422 IKNM 425
             +M
Sbjct: 538 FDSM 541



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           P  L T ++  Y  C     A  + + +     V W  +I  + ++     A+N+  RML
Sbjct: 50  PRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 109

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R+ T  + FT   VL +C     +  G   H LI  + FES++++ ++L+ MY++ G + 
Sbjct: 110 RAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 169

Query: 212 EARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQV------EGMISNYVT 262
           EA  +F+ + +R   DV+S  +I+S + +      A++LF K+ +          S+ ++
Sbjct: 170 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 229

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             ++L A   L A+   K+VH + +R      V + N+LID Y+KCG +  + +VF+ M 
Sbjct: 230 IVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 289

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + V+SWNAM+ GYS+ G  +   ELF  MR+EN +  D VT+ AV++G S  G     L
Sbjct: 290 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKEN-IPLDMVTWTAVIAGYSQRGCSHEAL 348

Query: 383 AVFHEIV 389
            VF +++
Sbjct: 349 NVFRQMI 355


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/635 (36%), Positives = 374/635 (58%), Gaps = 11/635 (1%)

Query: 8   SRAFSSLTFTQQ---QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE---Y 61
           S ++  +TF +Q    L  P   P    ++    N     AL+  + + L     +   +
Sbjct: 63  SSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTF 122

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EM 119
             LL AC     L+ G+ VHA + +  +   V+++  LI  Y KC  L  AR +F+   +
Sbjct: 123 PHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPL 182

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ER +VSWTA++SAY+Q     EAL +F +M + D +P+     +VL +       E G+
Sbjct: 183 PERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGR 242

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH+ ++K   E+   +  SL  MYAK G++  A+ +F+ +   +++   A+ISGYA+ G
Sbjct: 243 SIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             ++AI+LF ++  + +  + ++  S ++A + + +L   + +  +V R +    V + +
Sbjct: 303 FAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISS 362

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDM++KCGS+  +R VFD   +R V+ W+AM+VGY  HG  RE + L+  M E + V 
Sbjct: 363 ALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAM-ERDGVH 421

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT+L +L  C+H GM   G   F+ + D K    P+ +HY C++D+LGRAG + +A 
Sbjct: 422 PNDVTFLGLLIACNHSGMVREGWWFFNRMADHK--INPQQQHYACIIDLLGRAGHLDQAY 479

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E IK MP +P   + G+LL AC+ H +V++G++  Q+L  I+P N G+YV LSNLYA+A 
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W+ V  VR  MKEK + KD G SW+E+   L  F   D+SHP  EE+  +V+ +  + K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLK 599

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           E G+V +    L+D+++E+ E+ L  HSE++ + +GLI TP+G  +R+ KNLR CV+CH 
Sbjct: 600 EGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHA 659

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +SK+ GR++ +RD NRFHH  +G CSCGDYW
Sbjct: 660 ATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 203/357 (56%), Gaps = 8/357 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+++  ++  LR   ++HA ++    +   +L T+LI   +    ++ AR++FD++ 
Sbjct: 24  YASLIDSSTHKAQLR---QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLP 80

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              V  W A+I  YS+  H  +AL ++ +M  +   P+ FTF  +L +C G    ++G+ 
Sbjct: 81  RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRF 140

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC--LPERDVVSCTAIISGYAQL 238
           +H+ + +  FE+ ++V + L+ +YAK  R+  AR VFE   LPER +VS TAI+S YAQ 
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+E+F +++   +  + V   SVL A + L  L  G+ +H+ V++  + +   L 
Sbjct: 201 GEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLL 260

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL  MY+KCG +  ++ +FD M    +I WNAM+ GY+K+G  ++ ++LF+ M  ++ V
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD-V 319

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           +PD+++  + +S C+  G  ++  A + +    +  +  ++     ++DM  + G V
Sbjct: 320 RPDTISITSAISACAQVGSLEQ--ARWMDEYVSRSDYRDDVFISSALIDMFAKCGSV 374


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/577 (39%), Positives = 351/577 (60%), Gaps = 1/577 (0%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           +  Y ++L +CV  R+L  G+++H  ++ +   P   L T+L+  Y  C  +  AR++FD
Sbjct: 62  YHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFD 121

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            M +RNV  W  +I AY++      A+ L+  M+    EP+ FT+   L +CA     E 
Sbjct: 122 GMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLET 181

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G+++H  ++ +++   ++V + L+DMYAK G + +AR VF+ +  RD V   ++I+ Y Q
Sbjct: 182 GREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQ 241

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   EA+ L R +   G+     T  S ++A +  AAL  G+++H    R        L
Sbjct: 242 NGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKL 301

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           + SL+DMY+K G +  +R +F+ + +R ++SWNAM+ GY  HG   E ++LFN MR E +
Sbjct: 302 KTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQ 361

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V PD++T++ VLS C+HGGM       F  +VD     +P ++H+ C+VD+LG AGR  E
Sbjct: 362 VTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYS-IKPTVQHFTCLVDVLGHAGRFEE 420

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + IK MP +P + I G+LL  C++H NV++GE   Q+L+E+EPE+AGNYV+LSN+YA 
Sbjct: 421 AYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQ 480

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           +G+WE   RVR+LM  + + K  G SWIEL    H F   D SHP   E+  ++++L   
Sbjct: 481 SGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGL 540

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             +AGY+PD   V +DV +++K  ++  HSE+LA+ FGLI TP G  + V KNLR+C DC
Sbjct: 541 MSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDC 600

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S++  R++ +RD NR+HH V G CSC DYW
Sbjct: 601 HVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           ++Y  Y SVL +     +LG G+Q+H  +L   +    VL   L+D+Y+ CG + ++RR+
Sbjct: 60  NSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRL 119

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           FD M +R V  WN ++  Y++ G     ++L+  M +   V+PD+ TY
Sbjct: 120 FDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYG-VEPDNFTY 166


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/599 (38%), Positives = 367/599 (61%), Gaps = 7/599 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL   ++M   G +       ++L A  + + LR G+ +H +  ++ +   V +
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNV 283

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC     AR +F  MR + VVSW  MI   +Q   S EA   F++ML    
Sbjct: 284 TNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGE 343

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P   T   VL +CA     E G  +H L+ K   +S++ V +SL+ MY+K  R+  A  
Sbjct: 344 VPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAAS 403

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  L E+  V+  A+I GYAQ G  +EA+ LF  +Q +G+  +  T   V+TAL+  + 
Sbjct: 404 IFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSV 462

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
               K +H   +R  + + V +  +L+DMY+KCG++  +R++FD M ER VI+WNAM+ G
Sbjct: 463 NRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDG 522

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y  HG+G+E ++LFN M ++  VKP+ +T+L+V+S CSH G  + GL +F  + +     
Sbjct: 523 YGTHGVGKETLDLFNEM-QKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE-DYYL 580

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           EP ++HY  +VD+LGRAG++ +A  FI+ MP +P  ++LG++LGAC++H NV++GE   Q
Sbjct: 581 EPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQ 640

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           +L +++P+  G +V+L+N+YAS   W+ V +VR  M++K + K PG SW+EL   +HTF+
Sbjct: 641 KLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFY 700

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           +   +HP  +++ A ++ L  + K AGYVPD   + +DV+E+ K+++L  HSE+LA+ FG
Sbjct: 701 SGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFG 759

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ T  G  + + KNLR+C DCH+  K++S V GR++ +RD  RFHH   G+CSCGDYW
Sbjct: 760 LLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 237/489 (48%), Gaps = 41/489 (8%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           LK    N  L  AL   + M    + +   +Y  LL  C     L+ G+ +H  +I   +
Sbjct: 117 LKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGF 176

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++ T ++  Y KC  + +A KMF+ M+ +++VSWT +++ Y+Q  H+  AL L ++
Sbjct: 177 ESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQ 236

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M  +  +P+  T  ++L + A      +G+ IH    +S FES + V ++LLDMY K G 
Sbjct: 237 MQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGS 296

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
              AR VF+ +  + VVS   +I G AQ G  EEA   F K+  EG +   VT   VL A
Sbjct: 297 ARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLA 356

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L  L  G  VH  + + ++ S V + NSLI MYSKC  +  +  +F+N+ E+T ++W
Sbjct: 357 CANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTW 415

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----------HG--- 375
           NAM++GY+++G  +E + LF +M+ +  +K D  T + V++  +           HG   
Sbjct: 416 NAMILGYAQNGCVKEALNLFCMMQSQG-IKLDCFTLVGVITALADFSVNRQAKWIHGLAV 474

Query: 376 -GMEDRGLAVFHEIVD--CKDGF------------EPEIEHYGCVVDMLGRAGRVGEALE 420
               D  + V   +VD   K G             E  +  +  ++D  G  G   E L+
Sbjct: 475 RACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLD 534

Query: 421 FIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNL 474
               M     +P      S++ AC     V+ G  + + + E   +EP    +Y  + +L
Sbjct: 535 LFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEP-TMDHYSAMVDL 593

Query: 475 YASAGRWED 483
              AG+ +D
Sbjct: 594 LGRAGQLDD 602



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 200/382 (52%), Gaps = 9/382 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL  C +++ L    ++   +IK  +      +T++I  + K    S+A ++F+ +  +
Sbjct: 52  VLLENCTSKKEL---YQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELK 108

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
             V +  M+  Y++ +   +AL  F+RM+  +       +A +L  C      + G++IH
Sbjct: 109 LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIH 168

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            LII + FES+++V ++++ +YAK  +I  A  +FE +  +D+VS T +++GYAQ G  +
Sbjct: 169 GLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAK 228

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A++L  ++Q  G   + VT  S+L A++ + AL  G+ +H +  R    S V + N+L+
Sbjct: 229 RALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALL 288

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY KCGS   +R VF  M  +TV+SWN M+ G +++G   E    F  M +E +V P  
Sbjct: 289 DMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV-PTR 347

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT + VL  C++ G  +RG  V H+++D K   +  +     ++ M  +  RV  A    
Sbjct: 348 VTMMGVLLACANLGDLERGWFV-HKLLD-KLKLDSNVSVMNSLISMYSKCKRVDIAASIF 405

Query: 423 KNMP---FEPTAAILGSLLGAC 441
            N+        A ILG     C
Sbjct: 406 NNLEKTNVTWNAMILGYAQNGC 427


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/541 (41%), Positives = 348/541 (64%), Gaps = 5/541 (0%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           YL   L+ F   C  +S A ++F +++  N+ +W  MI  Y++  +   AL L+ +M  S
Sbjct: 78  YLIFTLLSF---CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVS 134

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
             EP+  T+  +L + A       G+++HS+ I++ FES ++V ++L+ MYA  G    A
Sbjct: 135 CIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESA 194

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
             +FE + ER++V+  ++I+GYA  G   EA+ LFR++ + G+  +  T  S+L+A + L
Sbjct: 195 HKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAEL 254

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            AL  G++ H ++++  +   +   N+L+D+Y+KCGS+  + +VFD M E++V+SW +++
Sbjct: 255 GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLI 314

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           VG + +G G+E +ELF  + E   + P  +T++ VL  CSH GM D G   F  + + + 
Sbjct: 315 VGLAVNGFGKEALELFKEL-ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE-EY 372

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G  P+IEHYGC+VD+LGRAG V +A EFI+NMP +P A +  +LLGAC +H ++ +GE  
Sbjct: 373 GIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVA 432

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
             +L+++EP+++G+YV+LSNLYAS  RW DV +VR  M  + V K PG S +EL   LH 
Sbjct: 433 RAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHE 492

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F   DRSHP  EE+  K+ +++   K  GYVP +S VL D++EE+KE  L  HSEK+A+ 
Sbjct: 493 FVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIA 552

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           F LI T  G PIRV+KNLR+C DCH   K +SKV+ R++ +RD++RFHH  +G CSC DY
Sbjct: 553 FMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDY 612

Query: 634 W 634
           W
Sbjct: 613 W 613



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 149/282 (52%), Gaps = 2/282 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL A      +R G++VH+  I+  +   V+++  L+  Y  C     A K+F+ M 
Sbjct: 143 YPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMA 202

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN+V+W ++I+ Y+      EAL LF  M     EP+ FT  ++L++CA      LG++
Sbjct: 203 ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRR 262

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H  ++K   + +++ G++LLD+YAK G I +A  VF+ + E+ VVS T++I G A  G 
Sbjct: 263 AHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGF 322

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQN 299
            +EA+ELF++L+ +G++ + +T+  VL A S    +  G      +   + I   +    
Sbjct: 323 GKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYG 382

Query: 300 SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
            ++D+  + G +  +     NM  +   + W  +L   + HG
Sbjct: 383 CMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 120/267 (44%), Gaps = 39/267 (14%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    EM   G+E       +LL+AC     L  G+R H +M+K      ++ 
Sbjct: 219 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 278

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A K+FDEM E++VVSWT++I   +      EAL LF  + R   
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGL 338

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+E TF  VL +C+           H  ++   F+            Y K  R+ E  G
Sbjct: 339 MPSEITFVGVLYACS-----------HCGMVDEGFD------------YFK--RMKEEYG 373

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +   +P+ +   C   + G A  GL ++A E  + +    M  N V + ++L A +    
Sbjct: 374 I---VPKIEHYGCMVDLLGRA--GLVKQAHEFIQNMP---MQPNAVVWRTLLGACTIHGH 425

Query: 276 LGHGKQVHSHVLRFEIP---SYVVLQN 299
           L  G+   + +L+ E      YV+L N
Sbjct: 426 LALGEVARAQLLQLEPKHSGDYVLLSN 452


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 360/591 (60%), Gaps = 4/591 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M + GL        ++L AC        G+++H  M+K       ++   L+  Y K
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAK 353

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS--DTEPNEFTFA 163
              L DARK+FD M  R+++ W A+IS  S      E L+LF RM +   D + N  T A
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +VL S A +      +Q+H+L  K    S  +V + L+D Y K G++  A  VF+     
Sbjct: 414 SVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSD 473

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D++S T +++  +Q    E+AI+LF ++  +G+  +    +S+L A + L+A   GKQVH
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVH 533

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           +H+++ +  S V   N+L+  Y+KCGS+  +   F  + ER ++SW+AM+ G ++HG G+
Sbjct: 534 AHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGK 593

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
             ++LF+ M +E  V P+ +T  +VLS C+H G+ D     F  + +   G +   EHY 
Sbjct: 594 RALDLFHRMLDEG-VAPNHITLTSVLSACNHAGLVDDAKKYFESMKETF-GIDRTEEHYA 651

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C++D+LGRAG++ +A+E + NMPF+  AA+ G+LLGA RVH + ++G    ++L  +EPE
Sbjct: 652 CMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPE 711

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
            +G +V+L+N YASAG W+++ +VR+LMK+  V K+P  SW+E+   +HTF   D+SHPM
Sbjct: 712 KSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPM 771

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
             ++  K+ +L     +AGYVP++   L+DVD  +KE +L  HSE+LA+ F LI TP GA
Sbjct: 772 TRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGA 831

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           PIRV KNLRIC DCH   K++SK+  R++ +RD NRFHH   GTCSCGDYW
Sbjct: 832 PIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 238/497 (47%), Gaps = 51/497 (10%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM----RERNVVSWTA 129
           +R G +VHA  + T     V++   L+  Y     + +AR+MFDE      ERN VSW  
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           MISAY +   S +A+ +F  M+ S   PNEF F+ V+ +C G+   E G+Q+H  ++++ 
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           +E  ++  ++L+DMY+K G I  A  VFE +P  DVVS  A ISG    G D  A+EL  
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLL 295

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++  G++ N  T +SVL A +G  A   G+Q+H  +++        +   L+DMY+K G
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHG 355

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAV 368
            L  +R+VFD M  R +I WNA++ G S  G   EV+ LF+ MR+E   +  +  T  +V
Sbjct: 356 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV 415

Query: 369 LSGCS-----------HGGMEDRGLA----VFHEIVDC--------------KDGFEPEI 399
           L   +           H   E  GL     V + ++D               K+    +I
Sbjct: 416 LKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDI 475

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
                ++  L +     +A++    M     EP + +L SLL AC      + G+ V   
Sbjct: 476 ISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAH 535

Query: 457 LMEIEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE----LDQ 509
           L++ +  +   AGN ++ +  YA  G  ED       + E+ +      SW      L Q
Sbjct: 536 LIKRQFTSDVFAGNALVYA--YAKCGSIEDADMAFSGLPERGIV-----SWSAMIGGLAQ 588

Query: 510 ILHTFHASDRSHPMREE 526
             H   A D  H M +E
Sbjct: 589 HGHGKRALDLFHRMLDE 605



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 225/443 (50%), Gaps = 21/443 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++NAC   R L  G++VH  +++T Y   V+    L+  Y+K   +  A  +F++M 
Sbjct: 208 FSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP 267

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             +VVSW A IS      H   AL L ++M  S   PN FT ++VL +CAGA  F LG+Q
Sbjct: 268 AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQ 327

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  ++K+  +   +V   L+DMYAK G + +AR VF+ +P RD++   A+ISG +  G 
Sbjct: 328 IHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGR 387

Query: 241 DEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             E + LF +++ EG  +  N  T ASVL + +   A+ H +QVH+   +  + S   + 
Sbjct: 388 HGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVI 447

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N LID Y KCG L Y+ +VF       +IS   M+   S+   G + ++LF  M  +  +
Sbjct: 448 NGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG-L 506

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +PDS    ++L+ C+     ++G  V   ++  K  F  ++     +V    + G + +A
Sbjct: 507 EPDSFVLSSLLNACTSLSAYEQGKQVHAHLI--KRQFTSDVFAGNALVYAYAKCGSIEDA 564

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME-----IEPENAGNYVILSN 473
                 +P E       +++G    H +       G+R ++     ++   A N++ L++
Sbjct: 565 DMAFSGLP-ERGIVSWSAMIGGLAQHGH-------GKRALDLFHRMLDEGVAPNHITLTS 616

Query: 474 LYAS---AGRWEDVTRVRELMKE 493
           + ++   AG  +D  +  E MKE
Sbjct: 617 VLSACNHAGLVDDAKKYFESMKE 639



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 178/362 (49%), Gaps = 14/362 (3%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
             R+L  G  +H+H++K+           L+  Y++C   S AR +FDE+ +   VSW++
Sbjct: 16  TSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSS 73

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           +++AYS      +AL L  R +R    P NEF    VL  CA    F  G Q+H+L + +
Sbjct: 74  LVTAYSNNGMPRDAL-LAFRAMRGRGVPCNEFALPVVL-KCAPDVRF--GAQVHALAVAT 129

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFE----CLPERDVVSCTAIISGYAQLGLDEEA 244
                ++V ++L+ +Y   G + EAR +F+       ER+ VS   +IS Y +     +A
Sbjct: 130 RLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDA 189

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           I +FR++   G   N   ++ V+ A +G   L  G+QVH  V+R      V   N+L+DM
Sbjct: 190 IGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDM 249

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSK G +  +  VF+ M    V+SWNA + G   HG     +EL   M+    V P+  T
Sbjct: 250 YSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLV-PNVFT 308

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
             +VL  C+  G  + G  +   +V     F+ E    G +VDM  + G + +A +    
Sbjct: 309 LSSVLKACAGAGAFNLGRQIHGFMVKAVADFD-EFVAVG-LVDMYAKHGFLDDARKVFDF 366

Query: 425 MP 426
           MP
Sbjct: 367 MP 368



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 10/213 (4%)

Query: 37  CSNGQ-LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C +G+   K  ++M   GLE       +LLNAC +      G++VHAH+IK  +   V+ 
Sbjct: 488 CDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFA 547

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  + DA   F  + ER +VSW+AMI   +Q  H   AL+LF RML    
Sbjct: 548 GNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGV 607

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-----ESHIYVGSSLLDMYAKAGRI 210
            PN  T  +VL++C  A   +  K+     +K  F     E H    + ++D+  +AG++
Sbjct: 608 APNHITLTSVLSACNHAGLVDDAKKYFE-SMKETFGIDRTEEHY---ACMIDILGRAGKL 663

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +A  +   +P +   +    + G +++  D E
Sbjct: 664 EDAMELVNNMPFQANAAVWGALLGASRVHRDPE 696


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 354/558 (63%), Gaps = 4/558 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           Q +H   IKT      ++   L+  Y KC  + DAR  F+ +   +V+  + MIS Y+Q 
Sbjct: 264 QGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQS 323

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
             + +A  LF+R++RS   PNE++ ++VL +C      + GKQIH+  IK   ES ++VG
Sbjct: 324 NQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVG 383

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D YAK   +  +  +F  L + + VS   I+ G++Q GL EEA+ +F ++Q   M 
Sbjct: 384 NALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMP 443

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
              VTY+SVL A +  A++ H  Q+H  + +    +  V+ NSLID Y+KCG +  + +V
Sbjct: 444 CTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKV 503

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F ++ ER +ISWNA++ GY+ HG   + +ELF+ M + N V+ + +T++A+LS C   G+
Sbjct: 504 FQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSN-VESNDITFVALLSVCCSTGL 562

Query: 378 EDRGLAVFHEI-VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            + GL++F  + +D   G +P +EHY C+V +LGRAGR+ +AL+FI ++P  P+A +  +
Sbjct: 563 VNHGLSLFDSMRID--HGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRA 620

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +C +H NV +G F  ++++EIEP++   YV+LSN+YA+AG  + V  +R+ M+   V
Sbjct: 621 LLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGV 680

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K PG SW+E+   +H F      HP    ++A ++ L++K    GY+PD++ VL+DVD+
Sbjct: 681 RKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDK 740

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           EQK ++L  HSE+LAL +GL+ TP G PIR++KNLR C+DCH     +SK+  R++ +RD
Sbjct: 741 EQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRD 800

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFHH  +G CSCGDYW
Sbjct: 801 INRFHHFEDGKCSCGDYW 818



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 121/217 (55%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC N   L  G+++H H IK  +   +++   L+ FY KC  +  + K+F  +R+ 
Sbjct: 350 SVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDA 409

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N VSW  ++  +SQ     EAL++F  M  +     + T+++VL +CA         QIH
Sbjct: 410 NEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIH 469

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I KS F +   +G+SL+D YAK G I +A  VF+ L ERD++S  AIISGYA  G   
Sbjct: 470 CSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 529

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +A+ELF ++    + SN +T+ ++L+       + HG
Sbjct: 530 DALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHG 566



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 167/365 (45%), Gaps = 28/365 (7%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           L  C+ +   RGG+ VH H+++     R  ++    L+  Y K   L+ AR++FD M ER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VS+  ++ A++Q+     A  LF R+     E N+F   T+L          L   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S   K   + + +VGS L+D Y+    + +A  VF  +  +D V  TA++S Y++    E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHVLRFEIPSYVVLQNSL 301
            A   FR  Q                    L A+   +Q +H   ++    +   +  +L
Sbjct: 246 NA---FRCAQS-----------------CSLLAISCARQGIHGCAIKTLNDTEPHVGGAL 285

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKP 360
           +DMY+KCG +  +R  F+ +    VI  + M+  Y++     +  ELF  LMR  + V P
Sbjct: 286 LDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR--SSVLP 343

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  +  +VL  C++    D G  + +  +  K G E ++     ++D   +   +  +L+
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAI--KIGHESDLFVGNALMDFYAKCNDMDSSLK 401

Query: 421 FIKNM 425
              ++
Sbjct: 402 IFSSL 406



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 1/154 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L AC +  ++R   ++H  + K+ +     +   LI  Y KC  + DA K+F  + 
Sbjct: 449 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 508

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER+++SW A+IS Y+    + +AL LF RM +S+ E N+ TF  +L+ C        G  
Sbjct: 509 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLS 568

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +  S+ I    +  +   + ++ +  +AGR+++A
Sbjct: 569 LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 602


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 345/543 (63%), Gaps = 11/543 (2%)

Query: 100 IVFYN-------KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +V YN       +C+ + +AR++F+ M +R+ ++WT M++ ++Q     +ALN F RM  
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRF 265

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
                +++TF ++LT+C      E GKQIH+ II+++++ +++VGS+L+DMY+K   I  
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKP 325

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A   F  +  ++++S TA+I GY Q G  EEA+ +F ++Q +G+  +  T  SV+++ + 
Sbjct: 326 AETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCAN 385

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA+L  G Q H   L   +  Y+ + N+L+ +Y KCGS+  + R+FD M     +SW A+
Sbjct: 386 LASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTAL 445

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++ G  +E ++LF  M  ++ VKPD VT++ VLS CS  G  ++G + FH +   K
Sbjct: 446 VTGYAQFGRAKETIDLFEKMLAKD-VKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQ--K 502

Query: 393 D-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           D G  P  +HY C++D+  R+GR+ EA EFIK MP  P A   G+LL ACR+  +++IG+
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           +  + L+EI+P+N  +YV+L +++A+ G W  V ++R  M+++ V K+PG SWI+    +
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKV 622

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D+SHP  + +  K++ L+ K  E GY PD+S VL+DV +  K  ++  HSEKLA
Sbjct: 623 HIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLA 682

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+  P   PIR++KNLR+CVDCHN  K +SK+ GR + +RD  RFH    G CSCG
Sbjct: 683 IAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCG 742

Query: 632 DYW 634
           D+W
Sbjct: 743 DFW 745



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 185/370 (50%), Gaps = 36/370 (9%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P ++    L+        L D   +F  M +R+ VS+ A+I+ +S       A+ L+  +
Sbjct: 70  PNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTL 129

Query: 151 LR--SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           LR  S   P+  T + ++ + +      LG+Q H  I++  F  + +VGS L+ MYAK G
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 209 RI-------------------------------HEARGVFECLPERDVVSCTAIISGYAQ 237
            I                                EAR +FE + +RD ++ T +++G+ Q
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL+ +A+  FR+++ +G+  +  T+ S+LTA   L+AL  GKQ+H++++R      V +
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            ++L+DMYSKC S+  +   F  MS + +ISW A++VGY ++G   E V +F+ M+ +  
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG- 368

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD  T  +V+S C++    + G A FH +     G    I     +V + G+ G + +
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEG-AQFHCLA-LVSGLMHYITVSNALVTLYGKCGSIED 426

Query: 418 ALEFIKNMPF 427
           A      M F
Sbjct: 427 AHRLFDEMLF 436



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 9/287 (3%)

Query: 56  MRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MRF+        + ++L AC     L  G+++HA++I+T Y   V++ + L+  Y+KC  
Sbjct: 263 MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRS 322

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  A   F  M  +N++SWTA+I  Y Q   S EA+ +F  M R   +P++FT  +V++S
Sbjct: 323 IKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISS 382

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA     E G Q H L + S    +I V ++L+ +Y K G I +A  +F+ +   D VS 
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSW 442

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVL 287
           TA+++GYAQ G  +E I+LF K+  + +  + VT+  VL+A S    +  G    HS   
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
              I         +ID+YS+ G L  +      M      I W  +L
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 2/186 (1%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS  +  +   EM   G++       +++++C N  +L  G + H   + +     + + 
Sbjct: 353 CSE-EAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DA ++FDEM   + VSWTA+++ Y+Q   + E ++LF +ML  D +
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVK 471

Query: 157 PNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           P+  TF  VL++C+ A   E G    HS+             + ++D+Y+++GR+ EA  
Sbjct: 472 PDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEE 531

Query: 216 VFECLP 221
             + +P
Sbjct: 532 FIKQMP 537



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 263 YASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           YA++L+A +       G  +H  +LR    P    L N L+  Y K G    +RRVFD  
Sbjct: 9   YAALLSAAARTEPHAAGA-LHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDAT 67

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
               + ++NA+L   +   +  ++  LF  M +      D+V+Y AV++G S GG   R 
Sbjct: 68  PHPNLFTYNALLSTLAHARLLDDMDSLFASMAQR-----DTVSYNAVIAGFSGGGAHARA 122

Query: 382 LAVFHEIVDCKDGFEP 397
           + ++H ++       P
Sbjct: 123 VRLYHTLLRAGSSVRP 138


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 377/638 (59%), Gaps = 68/638 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD----- 117
            +L++C   +TL  G+++H+ ++K      V + T L+  Y KC     A+ +FD     
Sbjct: 147 NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK 206

Query: 118 --------------------------EMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                                     +M +R++VSW +MIS YSQ+ ++ EAL +F +ML
Sbjct: 207 NISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKML 266

Query: 152 RSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG-- 208
              + +P+ FT A++L++CA      +GKQIH+ I+++  E+   VG++L+ MYAK+G  
Sbjct: 267 NEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGV 326

Query: 209 -------------------------------RIHEARGVFECLPERDVVSCTAIISGYAQ 237
                                           +  AR +F  L +RDVV+ TA+I GY Q
Sbjct: 327 EIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL  +A+ELFR +  EG   N  T A++L+  S L  L HGKQ+H+  ++    S   +
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 298 QNSLIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
            N+LI MY+K G++  ++RVFD    ++ ++SW +M++  ++HG+G+E + LF  M    
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            +KPD +TY+ VLS C+H G+ ++G   ++ + +  +  EP + HY C++D+ GRAG + 
Sbjct: 507 -MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE-IEPTLSHYACMIDLYGRAGLLQ 564

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA  FI++MP EP     GSLL +C++H N D+ +   +RL+ I+P N+G Y+ L+N+Y+
Sbjct: 565 EAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYS 624

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           + G+WE+  + R+LMK++ V K+ G SWI +   +H F   D  HP ++E+   + ++  
Sbjct: 625 ACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWE 684

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + K+ G++PD   VL+D++EE KE++L  HSEKLA+ FGL+ TPE   +R++KNLR+C D
Sbjct: 685 EIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCND 744

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+  KF+SK+ GR++ +RD  RFHH  +G+CSC DYW
Sbjct: 745 CHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 209/457 (45%), Gaps = 101/457 (22%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E +  +L   V  +    G+ VH  +IK      VYL   L+ FY K   L  A  +FDE
Sbjct: 11  EFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 119 MRERNVVSWTAMISAYSQKAHSFE--------------------------------ALNL 146
           M  ++  SW  +IS Y+++ + FE                                A+ +
Sbjct: 71  MPLKSTFSWNTLISGYAKQGN-FEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWM 129

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F +M+     P++FT + VL+SCA     ++G++IHS ++K    S + V +SLL+MYAK
Sbjct: 130 FAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAK 189

Query: 207 -------------------------------AGRIHEARGVFECLPERDVVSCTAIISGY 235
                                          +G+   A   FE +P+RD+VS  ++ISGY
Sbjct: 190 CGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY 249

Query: 236 AQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLR------ 288
           +Q G + EA+ +F K+  E  +  +  T AS+L+A + L  L  GKQ+H+++LR      
Sbjct: 250 SQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 289 ----------------FEIPSYVVLQN-----------SLIDMYSKCGSLTYSRRVFDNM 321
                            EI   +V  N           SL+D Y+K G++  +R +F+ +
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            +R V++W AM+VGY ++G+  + +ELF LM  E   +P+S T  A+LS  S   + + G
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP-EPNSYTLAAMLSVSSSLTILEHG 428

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             +    +   +   P + +   ++ M  + G +  A
Sbjct: 429 KQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA 463



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 174/344 (50%), Gaps = 12/344 (3%)

Query: 6   KQSRAFSSLTFTQQQLTVPSFPPNPQNLKTL---CSNGQLTKALIEMATLGLEMRFEEYD 62
           +Q     +L    + L  PS  P+   L ++   C+N +      ++    L    E   
Sbjct: 251 QQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSG 310

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPP---VYLRTRLIVFYNKCECLSDARKMFDEM 119
            + NA ++     GG  + A +I    R     +   T L+  Y K   +  AR++F+++
Sbjct: 311 AVGNALISMYAKSGGVEI-ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R+R+VV+WTAMI  Y Q     +AL LF  M+    EPN +T A +L+  +     E GK
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQ 237
           QIH+  IK+   S   V ++L+ MYAK G I+ A+ VF+ LP  ++++VS T++I   AQ
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQ 488

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVV 296
            GL +EAI LF ++   GM  +++TY  VL+A + +  +  G++ ++ +    EI   + 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
               +ID+Y + G L  +    ++M  E   I+W ++L     H
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIH 592


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 347/559 (62%), Gaps = 11/559 (1%)

Query: 84  MIKTCYRPPVYLRTRLIVFYN-------KCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           +I+   R    +  + +V YN       +C+ + DA+ +F  M +R+ ++WT M++  +Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL++F RM       +++TF ++LT+C      E GKQIH+ I ++ +E +++V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           GS+L+DMY+K   I  A  VF  +  R+++S TA+I GY Q    EEA+  F ++Q++G+
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T  SV+++ + LA+L  G Q H   L   +  Y+ + N+L+ +Y KCGS+  + R
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD MS    +SW A++ GY++ G  +E ++LF  M   N +KPD VT++ VLS CS  G
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLA-NGLKPDGVTFIGVLSACSRAG 494

Query: 377 MEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           + ++G   F  +   KD G  P  +HY C++D+  R+GR  EA EFIK MP  P A    
Sbjct: 495 LVEKGCDYFDSMQ--KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWA 552

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LL +CR+  N++IG++  + L+E +P+N  +YV+L +++A+ G+W +V  +R  M+++ 
Sbjct: 553 TLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQ 612

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K+PG SWI+    +H F A D+SHP    +  K++ L+ K  E GY PD+S VL+DV 
Sbjct: 613 VKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVA 672

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +  K  ++  HSEKLA+ FGLI  P+  PIR++KNLR+CVDCHN  KF+SK+ GR + +R
Sbjct: 673 DADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVR 732

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH   +GTCSCGD+W
Sbjct: 733 DAVRFHKFSDGTCSCGDFW 751



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 202/418 (48%), Gaps = 67/418 (16%)

Query: 74  LRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNKCECLSDARKMFDEMR------------ 120
           +R    VH  ++KT  + PP +L   L+  Y K   L+ AR++FDEM             
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 121 -------------------ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEF 160
                              ER+ VS+ A+I+ +S       ++ L+  +LR ++  P   
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR------ 214
           T + ++   +      LG  +H  +++  F ++ +VGS L+DMYAK G I +AR      
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 215 -------------------------GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
                                    G+F+ + +RD ++ T +++G  Q GL  EA+++FR
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++ EG+  +  T+ S+LTA   LAAL  GKQ+H+++ R      V + ++L+DMYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  +  VF  M+ R +ISW AM+VGY ++    E V  F+ M+ +  +KPD  T  +V+
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG-IKPDDFTLGSVI 386

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           S C++    + G A FH +     G    I     +V + G+ G + +A      M F
Sbjct: 387 SSCANLASLEEG-AQFHCLA-LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 122/211 (57%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC     L  G+++HA++ +T Y   V++ + L+  Y+KC  +  A  +F  M 
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN++SWTAMI  Y Q A S EA+  F  M     +P++FT  +V++SCA     E G Q
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H L + S    +I V ++L+ +Y K G I +A  +F+ +   D VS TA+++GYAQ G 
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            +E I+LF K+   G+  + VT+  VL+A S
Sbjct: 461 AKETIDLFEKMLANGLKPDGVTFIGVLSACS 491



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 41/263 (15%)

Query: 162 FATVLTSCAGA---FGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVF 217
           +A +L+S AG     G  +   +H LI+K+  ++   ++ + LL  YAK+GR+  AR VF
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 218 E-------------------------------CLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +                                +PERD VS  A+I+G++  G    +++
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQ 131

Query: 247 LFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           L+R L + E +    +T ++++   S L+    G  VH  VLR    +Y  + + L+DMY
Sbjct: 132 LYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMY 191

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           +K G +  +RRVF  M  +TV+ +N ++ G  +  M  +   LF LM     V  DS+T+
Sbjct: 192 AKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM-----VDRDSITW 246

Query: 366 LAVLSGCSHGGMEDRGLAVFHEI 388
             +++G +  G++   L VF  +
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRM 269



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 39/199 (19%)

Query: 263 YASVLTALSG---LAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           YA++L++ +G      +     VH  +L+   + P   +L N L+  Y+K G L  +RRV
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLL-NHLLTAYAKSGRLARARRV 70

Query: 318 FD-------------------------------NMSERTVISWNAMLVGYSKHGMGREVV 346
           FD                               +M ER  +S+NA++ G+S  G     V
Sbjct: 71  FDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSV 130

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +L+  +  E  V+P  +T  A++   S   + DR L         + GF         +V
Sbjct: 131 QLYRALLREESVRPTRITLSAMIMVAS--ALSDRALGHSVHCQVLRLGFGAYAFVGSPLV 188

Query: 407 DMLGRAGRVGEALEFIKNM 425
           DM  + G + +A    + M
Sbjct: 189 DMYAKMGLIRDARRVFQEM 207


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/562 (41%), Positives = 354/562 (62%), Gaps = 4/562 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+++H  ++K  +   V++   L+  Y++   + DARK+FD+M  R+  SW AMIS 
Sbjct: 10  LLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISG 69

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y Q  ++ EAL++   M     + +  T A+VL  CA       GK IH  +IK   E  
Sbjct: 70  YCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFE 129

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V ++L++MYAK G +  A+ VF  L  +DVVS   +I+GYAQ GL  EAIE++  ++ 
Sbjct: 130 LFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEE 188

Query: 254 -EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            E +I N  T+ S+L A S + AL  G ++H  V++  + S V +   LIDMY KCG L 
Sbjct: 189 HEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLD 248

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +  +F  +  +  + WNAM+  Y  HG G + +ELF  M+ E +VKPD +T++++LS C
Sbjct: 249 DAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE-RVKPDHITFVSLLSAC 307

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           SH G+       F+ +++ + G +P ++HYGC+VD+ GRAG +  A  FIK MP +P A+
Sbjct: 308 SHSGLVSDAQWCFN-MMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDAS 366

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
             G+LL ACR+H N+++G+   +RL E++ EN G YV+LSN+YA+ G+WE V  VR L +
Sbjct: 367 AWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLAR 426

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           ++ + K+PG S I L+  +  F+  +++HP  EE+  +++ L+ K K  GYVPD   VL 
Sbjct: 427 DRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQ 486

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           DV+E++KE +L+GHSE+LA+ +G+I T    PIR+ KNLR+C DCH   KF+S +  R++
Sbjct: 487 DVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREI 546

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD +RFHH   GTCSCGDYW
Sbjct: 547 IVRDSSRFHHFKGGTCSCGDYW 568



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  +   L+ G R+H  +IK C    V++ T LI  Y KC  L DA  +F ++  +
Sbjct: 201 SILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRK 260

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-------GAFGF 175
           N V W AMIS Y       +AL LF  M     +P+  TF ++L++C+         + F
Sbjct: 261 NSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCF 320

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            + ++ +   IK + + +      ++D++ +AG +  A    + +P
Sbjct: 321 NMMEEEYG--IKPSLKHY----GCMVDLFGRAGELEMAFNFIKKMP 360


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 352/588 (59%), Gaps = 32/588 (5%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV----------- 125
           G+++H  +IK  +   + + + L+  Y    C+SDA+K+F  + +RN V           
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 126 -------------------SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
                              SW AMI   +Q   + EA+  F  M     + +++ F +VL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C G      GKQIH+ II++NF+ HIYVGS+L+DMY K   +H A+ VF+ + +++VV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S TA++ GY Q G  EEA+++F  +Q  G+  ++ T    ++A + +++L  G Q H   
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           +   +  YV + NSL+ +Y KCG +  S R+F+ M+ R  +SW AM+  Y++ G   E +
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +LF+ M +   +KPD VT   V+S CS  G+ ++G   F +++  + G  P I HY C++
Sbjct: 458 QLFDKMVQHG-LKPDGVTLTGVISACSRAGLVEKGQRYF-KLMTSEYGIVPSIGHYSCMI 515

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+  R+GR+ EA+ FI  MPF P A    +LL ACR   N++IG++  + L+E++P +  
Sbjct: 516 DLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPA 575

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            Y +LS++YAS G+W+ V ++R  M+EK V K+PG+SWI+    LH+F A D S P  ++
Sbjct: 576 GYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQ 635

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+++L+ K  + GY PD S V +DV+E  K K+L  HSE+LA+ FGLI  P G PIR
Sbjct: 636 IYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIR 695

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V KNLR+CVDCHN  K +S V GR++ +RD  RFH   +GTCSCGD+W
Sbjct: 696 VGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 164/306 (53%), Gaps = 5/306 (1%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +K L  NG   +A+    EM   GL+M    + ++L AC     +  G+++HA +I+T +
Sbjct: 242 IKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF 301

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +  +Y+ + LI  Y KC+CL  A+ +FD M+++NVVSWTAM+  Y Q   + EA+ +F+ 
Sbjct: 302 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLD 361

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M RS  +P+ +T    +++CA     E G Q H   I S    ++ V +SL+ +Y K G 
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I ++  +F  +  RD VS TA++S YAQ G   E I+LF K+   G+  + VT   V++A
Sbjct: 422 IDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISA 481

Query: 270 LSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVI 327
            S    +  G++    +   + I   +   + +ID++S+ G L  + R  + M      I
Sbjct: 482 CSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAI 541

Query: 328 SWNAML 333
            W  +L
Sbjct: 542 GWTTLL 547



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 155/372 (41%), Gaps = 78/372 (20%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF--------------------- 217
           K IH  II++      ++ ++++  YA       AR VF                     
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 218 ----------ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                     E LP+RD V+   +I GY+  GL   A++ +  +  +   S  +T  +++
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRD--FSANLTRVTLM 143

Query: 268 TALSGLAALGH---GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           T L   ++ GH   GKQ+H  V++    SY+++ + L+ MY+  G ++ +++VF  + +R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
             + +N+++ G    GM  + ++LF  M +      DSV++ A++ G +  G+    +  
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEK------DSVSWAAMIKGLAQNGLAKEAIEC 257

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F E+     G + +   +G V+   G  G + E                 G  + AC + 
Sbjct: 258 FREMK--VQGLKMDQYPFGSVLPACGGLGAINE-----------------GKQIHACIIR 298

Query: 445 YNVDIGEFVGQRLME-----------------IEPENAGNYVILSNLYASAGRWEDVTRV 487
            N     +VG  L++                 ++ +N  ++  +   Y   GR E+  ++
Sbjct: 299 TNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKI 358

Query: 488 RELMKEKAVTKD 499
              M+   +  D
Sbjct: 359 FLDMQRSGIDPD 370



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 256 MISNYVTYASVLTALSGLAALGHG---KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
           M SNY  Y+  +    GL A       K +H +++R        L N+++  Y+   S T
Sbjct: 1   MASNY--YSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSST 58

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           Y+RRVFD + +  + SWN +L+ YSK G+  E+   F  + +      D VT+  ++ G 
Sbjct: 59  YARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDR-----DGVTWNVLIEGY 113

Query: 373 SHGGMEDRGLAVFHEIV 389
           S  G+    +  ++ ++
Sbjct: 114 SLSGLVGAAVKAYNTMM 130


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 369/589 (62%), Gaps = 10/589 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+++    + T L  C  QR L   +++H  ++K  Y     +RT L+V Y+KC  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 109 LSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           + +A K+F       NVV+WTAMI  + Q  ++ +A++LF +M R    PN FT++TVL 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
               +    L  Q+H+ IIK+ +E    V ++LLD Y K G + E+  VF  +P +D+V+
Sbjct: 417 GKPSS----LLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA 472

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHV 286
            +A+++G AQ    E+A+E+F +L  EG+  N  T++SV+ A S  AA + HGKQ+H+  
Sbjct: 473 WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATA 532

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++    + + + ++L+ MYSK G++  + +VF    ER ++SWN+M+ GY +HG  ++ +
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCV 405
           E+F +M+ +  +  D VT++ VL+ C+H G+ + G   F+ ++  KD   + +IEHY C+
Sbjct: 593 EVFQIMQNQG-LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMI--KDYHIDKKIEHYSCM 649

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+  RAG   +A++ I  MPF  +  I  +LL ACRVH N+++G+   ++L+ ++P +A
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YV+LSN++A AG WE+   VR+LM E+ V K+ G SWIE+   + +F A D SHP  +
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
            + AK+++LS+K K+ GY PD + V +DV+EE KE +L  HSE+LA+ +GLI  P GAPI
Sbjct: 770 LVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPI 829

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ KNLRIC DCHN  + +S +  R + +RD NRFHH   G CSCG YW
Sbjct: 830 QIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 164/296 (55%), Gaps = 2/296 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G++VH   +K+ +   V + T L+  Y K E   D R +FDEM  +NVVSWT+++S Y++
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              + E ++L  +M      PN FTFATVL + A     E G Q+H++I+K+ FE   +V
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++L+ MY K+  + +A  VF+ +  RD V+   +I GYA +G   E  ++F ++++ G+
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +   + + L   S    L   KQ+H  V++        ++ +L+  YSKC S+  + +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFK 362

Query: 317 VFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           +F    +   V++W AM+ G+ ++    + V+LF  M  E  V+P+  TY  VL+G
Sbjct: 363 LFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREG-VRPNHFTYSTVLAG 417



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 175/337 (51%), Gaps = 8/337 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N ++   + +M   G+      + T+L A  ++  + GG +VHA ++K  +    ++   
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K E + DA  +FD M  R+ V+W  MI  Y+      E   +F RM  +  + +
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLS 305

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
              F T L  C+        KQ+H  ++K+ +E    + ++L+  Y+K   + EA  +F 
Sbjct: 306 RTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS 365

Query: 219 CL-PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL-SGLAAL 276
                 +VV+ TA+I G+ Q   +E+A++LF ++  EG+  N+ TY++VL    S L + 
Sbjct: 366 MADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS- 424

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
               Q+H+ +++        +  +L+D Y K G++  S RVF ++  + +++W+AML G 
Sbjct: 425 ----QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL 480

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++     + +E+F  + +E  VKP+  T+ +V++ CS
Sbjct: 481 AQTRDSEKAMEVFIQLVKEG-VKPNEYTFSSVINACS 516



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 159/294 (54%), Gaps = 5/294 (1%)

Query: 83  HMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
           H IK    P  +L  + + F +       A ++FDE   +++  +  ++  +S+  H  E
Sbjct: 28  HHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           AL+LF  +  S    +  T +  L  C   F   +G+Q+H   +KS F   + VG+SL+D
Sbjct: 88  ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY K     + RG+F+ +  ++VVS T+++SGYA+ GL++E I L  ++Q+EG+  N  T
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 263 YASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +A+VL AL+  + +  G QVH+ +++  FE  ++V   N+LI MY K   +  +  VFD+
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC--NALICMYLKSEMVGDAEAVFDS 265

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           M  R  ++WN M+ GY+  G   E  ++F+ MR    VK     +   L  CS 
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAG-VKLSRTVFCTALKLCSQ 318


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/651 (37%), Positives = 365/651 (56%), Gaps = 46/651 (7%)

Query: 27  PPNPQNLKTLCSNGQLTKA-------LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79
           PPN     TL     LT           +M   GL      + +L  +C   +     ++
Sbjct: 89  PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQ 148

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECL------------------------------ 109
           +HAH +K       ++ T LI  Y++   L                              
Sbjct: 149 LHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGH 208

Query: 110 -SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
             DAR++FDE+  ++VVSW AMI+ Y Q     EAL  F RM  +D  PN+ T  +VL++
Sbjct: 209 VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSA 268

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C      ELGK I S +    F  ++ + ++L+DMY+K G I  AR +F+ + ++DV+  
Sbjct: 269 CGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILW 328

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I GY  L L EEA+ LF  +  E +  N VT+ +VL A + L AL  GK VH+++ +
Sbjct: 329 NTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDK 388

Query: 289 ----FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
                   + V L  S+I MY+KCG +  + +VF +M  R++ SWNAM+ G + +G    
Sbjct: 389 NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAER 448

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYG 403
            + LF  M  E   +PD +T++ VLS C+  G  + G   F  +   KD G  P+++HYG
Sbjct: 449 ALGLFEEMINEG-FQPDDITFVGVLSACTQAGFVELGHRYFSSM--NKDYGISPKLQHYG 505

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C++D+L R+G+  EA   + NM  EP  AI GSLL ACR+H  V+ GE+V +RL E+EPE
Sbjct: 506 CMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPE 565

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           N+G YV+LSN+YA AGRW+DV ++R  + +K + K PG + IE+D ++H F   D+ HP 
Sbjct: 566 NSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQ 625

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
            E +   + ++    +E G+VPD S VLYD+DEE KE  L  HSEKLA+ FGLI T  G+
Sbjct: 626 SENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGS 685

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            IR++KNLR+C +CH+  K +SK++ R++  RD+NRFHH  +G CSC D W
Sbjct: 686 TIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 193/401 (48%), Gaps = 43/401 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMR 120
            LL  C +  +L+   ++H+ +IK+     ++ +++LI F   +    LS A  +F  + 
Sbjct: 30  NLLAKCPDIPSLK---QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIH 86

Query: 121 ER--NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
            +  N+  W  +I A+S       +L+LF +ML S   PN  TF ++  SCA +      
Sbjct: 87  HQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEA 146

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS----- 233
           KQ+H+  +K     H +V +SL+ MY++ G +  AR VF+    RD VS TA+I+     
Sbjct: 147 KQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSE 206

Query: 234 --------------------------GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                     GY Q G  EEA+  F ++Q   +  N  T  SVL
Sbjct: 207 GHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVL 266

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           +A   L +L  GK + S V        + L N+L+DMYSKCG +  +R++FD M ++ VI
Sbjct: 267 SACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVI 326

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            WN M+ GY    +  E + LF +M  EN V P+ VT+LAVL  C+  G  D G  V H 
Sbjct: 327 LWNTMIGGYCHLSLYEEALVLFEVMLREN-VTPNDVTFLAVLPACASLGALDLGKWV-HA 384

Query: 388 IVDCK---DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +D      G    +  +  ++ M  + G V  A +  ++M
Sbjct: 385 YIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM 425


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/597 (39%), Positives = 354/597 (59%), Gaps = 3/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           + Q   ++ +M   G+        ++L        L  G+ +HA+ I+  +   V L+T 
Sbjct: 191 HAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTA 250

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEP 157
           L+  Y KC  L  ARK+F+ + ++N V W+AMI  Y       +AL L+  ML      P
Sbjct: 251 LLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNP 310

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
              T AT+L +CA     + GK++H  +IKS  +    VG+SL+ MYAK G +  A G  
Sbjct: 311 TPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFL 370

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +  +D VS +AIISG  Q G  E+A+ +FR++Q  G+     T  ++L A S LAAL 
Sbjct: 371 DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQ 430

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           HG   H + +     +   + N++IDMYSKCG +T SR +FD M  R +ISWN M++GY 
Sbjct: 431 HGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYG 490

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG+  E + LF  ++    +KPD VT +AVLS CSH G+   G   F  +       +P
Sbjct: 491 IHGLCVEALSLFQELQALG-LKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQ-NFNIKP 548

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            + HY C+VD+L RAG + EA  FI+ MPF P   I G+LL ACR H N+++GE V +++
Sbjct: 549 RMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKI 608

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
             + PE  GN+V++SN+Y+S GRW+D   +R + +     K PG SW+E+  ++H F   
Sbjct: 609 QLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGG 668

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
            +SHP    ++ K+++L V+ K+ GY  D S VL+DV+EE+KE++LL HSEK+A+ FG++
Sbjct: 669 HQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGIL 728

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T   + I V KNLRICVDCH+  KF++ +  R++++RD +RFHH  +G C+C D+W
Sbjct: 729 NTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 203/412 (49%), Gaps = 9/412 (2%)

Query: 20  QLTVPSFPPNPQNLKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           Q+  PS       ++T   +G   +++   + M  LG+      +  LL AC + + L+ 
Sbjct: 66  QIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQL 125

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAY 134
           G+ +H H         +Y+ T L+  Y KC  L  A+ +F+ +  ++R++V+W AMI+A+
Sbjct: 126 GRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAF 185

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           S  A   + ++   +M ++   PN  T  ++L +   A     GK IH+  I++ F  ++
Sbjct: 186 SFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNV 245

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQV 253
            + ++LLDMYAK   +  AR +F  + +++ V  +A+I GY       +A+ L+   L +
Sbjct: 246 VLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI 305

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G+     T A++L A + L  L  GK++H H+++  +     + NSLI MY+KCG +  
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDN 365

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +    D M  +  +S++A++ G  ++G   + + +F  M + + + P   T +A+L  CS
Sbjct: 366 AVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM-QSSGIAPYLETMIALLPACS 424

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           H      G       V    GF  +      ++DM  + G++  + E    M
Sbjct: 425 HLAALQHGTCCHGYTV--VRGFTNDTSICNAIIDMYSKCGKITISREIFDRM 474



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 171/332 (51%), Gaps = 5/332 (1%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           AR +FD++ + +VV W  MI  Y+      +++ L++ ML+    P  FTF  +L +C+ 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCT 229
               +LG+ IH+          +YV ++LL MYAK G +++A+ +F  +   +RD+V+  
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A+I+ ++   L  + I    ++Q  G+  N  T  S+L  +    AL  GK +H++ +R 
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                VVLQ +L+DMY+KC  L Y+R++F+ ++++  + W+AM+ GY  H    + + L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           + M     + P   T   +L  C+      RG  +   ++  K G + +      ++ M 
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMI--KSGMDLDTTVGNSLISMY 357

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
            + G +  A+ F+  M  + T +   +++  C
Sbjct: 358 AKCGIMDNAVGFLDEMIAKDTVS-YSAIISGC 388



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 3/177 (1%)

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  AR VF+ +P+  VV    +I  YA  G  +++I L+  +   G+     T+  +L A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVI 327
            S L AL  G+ +H+H     +   + +  +L+ MY+KCG L  ++ +F+++S  +R ++
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
           +WNAM+  +S H +  + +     M++   V P+S T +++L          +G A+
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAG-VTPNSSTLVSILPTIGQANALHQGKAI 232


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/587 (37%), Positives = 353/587 (60%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  +L  C     +  G+++H+  IK  +   +Y+   LI  Y+K  
Sbjct: 336 QMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYR 395

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL  ARK+ + + +R+VVSWT+MI+ Y Q     EAL  F  M      P+    A+  +
Sbjct: 396 CLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CAG      G QIH+ +  S + + I + ++L+++YA+ GR  EA  +F  +  +D ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT 515

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +ISG+ Q  L E+A+ +F K+   G   N  T+ S ++AL+ LA +  GKQVH   +
Sbjct: 516 WNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S   + N+LI +Y KCGS+  ++ +F  MS R  +SWN ++   S+HG G E ++
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL+ F  + +   G  P  +HY CVVD
Sbjct: 636 LFDQMKQEG-LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVY-GLNPIPDHYACVVD 693

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAG++  A  F+  MP    A I  +LL AC+VH N++IGE   + L+E+EP ++ +
Sbjct: 694 ILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSAS 753

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA  G+W +  +VR++MK++ + K+PGRSWIE+   +H F   DR HP+ +++
Sbjct: 754 YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQI 813

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              + +L+ +  + GY  +   + ++ ++EQK+     HSEKLA+ FGL+  P   P+RV
Sbjct: 814 YKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRV 873

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IKNLR+C DCH++ KF S+V  R++ LRD  RFHH   G+CSCGDYW
Sbjct: 874 IKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 208/409 (50%), Gaps = 5/409 (1%)

Query: 37  CSNGQLTKALI-EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C +G+    +  EM   GL        +LL AC +   L+ G+++H++++K         
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A  +F+     NVV W  M+ AY Q +   ++  +F +M  +  
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN+FT+  +L +C      ELG+QIHSL IK+ FES +YV   L+DMY+K   + +AR 
Sbjct: 343 HPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARK 402

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           + E L +RDVVS T++I+GY Q    EEA+  F+++Q  G+  + +  AS  +A +G+ A
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G Q+H+ V      + + + N+L+++Y++CG    +  +F  +  +  I+WN ++ G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISG 522

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           + +  +  + + +F  M +    K +  T+++ +S  ++     +G  V    V  K G 
Sbjct: 523 FGQSRLYEQALMVFMKMSQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAV--KTGH 579

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
             E E    ++ + G+ G + +A      M      +   +++ +C  H
Sbjct: 580 TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQH 627



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 179/329 (54%), Gaps = 11/329 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   +  AR++F E+  R+ VSW AM+S Y+Q+    EA  L+ +M  +   P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +  ++VL++C     F  G+ IH+ + K  F S  +VG++L+ +Y   G    A  VF 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +   D V+   +ISG+AQ G  E A+++F ++Q+ G+  + VT AS+L A + +  L  
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYS 337
           GKQ+HS++L+  +    + + SL+D+Y KCG +  +  +F N+ +RT V+ WN MLV Y 
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVAYG 322

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +     +  E+F  M +   + P+  TY  +L  C+  G  + G  +    +  K+GFE 
Sbjct: 323 QISDLAKSFEIFGQM-QATGIHPNKFTYPCILRTCTCTGQIELGEQIHS--LSIKNGFES 379

Query: 398 EIEHYGCVVDM------LGRAGRVGEALE 420
           ++   G ++DM      L +A ++ E LE
Sbjct: 380 DMYVSGVLIDMYSKYRCLDKARKILEMLE 408



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 3/363 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC   +    G+ +HA + K  +    ++   LI  Y        A ++F +M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T A++L +CA     + GKQ+H
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLH 268

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++K+          SLLD+Y K G I  A  +F      +VV    ++  Y Q+    
Sbjct: 269 SYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLA 328

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ E+F ++Q  G+  N  TY  +L   +    +  G+Q+HS  ++    S + +   LI
Sbjct: 329 KSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI 388

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK   L  +R++ + + +R V+SW +M+ GY +H    E +  F  M ++  V PD+
Sbjct: 389 DMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM-QDCGVWPDN 447

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +   +  S C+      +GL +   +     G+  +I  +  +V++  R GR  EA    
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVY--VSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 423 KNM 425
           + +
Sbjct: 506 REI 508



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 128/239 (53%), Gaps = 3/239 (1%)

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH+  +     +   +G+ L+D+YAK G + +AR VF+ L  RD VS  A++SGYAQ G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L +EA  L+ ++    +I      +SVL+A +       G+ +H+ V +    S   + N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI +Y   GS   + RVF +M     +++N ++ G+++ G G   +++F+ M + + ++
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM-QLSGLR 242

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           PD VT  ++L+ C+  G   +G  +   ++     F+   E  G ++D+  + G +  A
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIETA 299



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 7/185 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q     ++M+  G +     + + ++A  N   ++ G++VH   +KT +     +   LI
Sbjct: 531 QALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + DA+ +F EM  RN VSW  +I++ SQ     EAL+LF +M +   +PN+ 
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650

Query: 161 TFATVLTSCAGAFGFELG----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           TF  VL +C+     E G    K + ++   +    H    + ++D+  +AG++  AR  
Sbjct: 651 TFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHY---ACVVDILGRAGQLDRARRF 707

Query: 217 FECLP 221
            + +P
Sbjct: 708 VDEMP 712


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/536 (41%), Positives = 344/536 (64%), Gaps = 11/536 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS+AR++F+E+  R+V +WTAM+S + Q     EA  +F  M     E N
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKN 307

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  ++     +   E  +++   +   N  S     ++++  YA+ G I +A+ +F+
Sbjct: 308 EVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW----NTMVTGYAQCGNIDQAKILFD 363

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD +S  A+ISGYAQ G  EEA+ LF K++ +G I N    A  L++ + +AAL  
Sbjct: 364 EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL 423

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H  +++    +  +  N+L+ MY KCGS+  +  VF++++E+ ++SWN M+ GY++
Sbjct: 424 GKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYAR 483

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G+E + LF  M+    +KPD VT + VLS CSH G+ D+G+  F+ +     G    
Sbjct: 484 HGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ-NYGITAN 540

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            +HY C++D+LGRAGR+ EAL  +K+MPF P AA  G+LLGA R+H + ++GE   +++ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EP+N+G YV+LSNLYA++GRW +V  +R  M++K V K PG SW+E+    H F   D
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            SHP  E + A +++L ++ K+ G+V     VL+DV+EE+KE +L  HSEKLA+ FG++ 
Sbjct: 661 CSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILS 720

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            P G PIRVIKNLR+C DCHN  K +SK+  R++ +RD NRFHH  EG+CSCGDYW
Sbjct: 721 IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 180/396 (45%), Gaps = 40/396 (10%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y K   LS AR +F++M E++VVSW AM+S ++Q     EA  +F +ML      NE ++
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISW 187

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             +L++       E  ++    +  S  +  I   + L+  Y +  R+ +AR +F+ +P 
Sbjct: 188 NGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV 243

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYVTYASVLTALSGLAAL 276
           RD +S   +I+GYAQ GL  EA  LF +L +        M+S +V    +  A      +
Sbjct: 244 RDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM 303

Query: 277 GHGKQVHSHVLRFEIPSYVVLQ--------------------NSLIDMYSKCGSLTYSRR 316
               +V  + +   I  YV  Q                    N+++  Y++CG++  ++ 
Sbjct: 304 PEKNEVSWNAM---IAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD M +R  ISW AM+ GY++ G   E + LF  M+ +  +   S    A LS C+   
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA-LSSCAEIA 419

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
             + G  +   +V  K GF+        ++ M G+ G + EA +  +++  +   +    
Sbjct: 420 ALELGKQLHGRLV--KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTM 477

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           + G  R  +  +         M I+P++     +LS
Sbjct: 478 IAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 174/366 (47%), Gaps = 35/366 (9%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + ++V W   ISAY +K     AL++F  M R  T     T+  +++       F+  ++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK 112

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +   +   +  S     + +L  Y K G +  AR +F  +PE+DVVS  A++SG+AQ G 
Sbjct: 113 VFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA ++F ++    ++ N +++  +L+A      +   +++    + +EI S+    N 
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSW----NC 220

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+  Y +   L  +R +FD M  R  ISWN M+ GY+++G+  E   LF    EE  ++ 
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF----EELPIR- 275

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH--YGCVVDMLGRAGRVGEA 418
           D   + A++SG    GM D    +F E+        PE     +  ++    ++ ++ +A
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEM--------PEKNEVSWNAMIAGYVQSQQIEKA 327

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            E    MP   T++    + G  +   N+D  + +     E+   +  ++  + + YA +
Sbjct: 328 RELFDQMPSRNTSSWNTMVTGYAQCG-NIDQAKIL---FDEMPQRDCISWAAMISGYAQS 383

Query: 479 GRWEDV 484
           G+ E+ 
Sbjct: 384 GQSEEA 389



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L++C     L  G+++H  ++K  ++        L+  Y KC  + +A  +F+++ E+++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHS 183
           VSW  MI+ Y++     EAL LF  M +   +P++ T   VL++C+     + G +  +S
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +       ++    + ++D+  +AGR+ EA  + + +P
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMP 568



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 39/291 (13%)

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           E++     + + D+V     IS Y + G  E A+ +F  ++        VTY ++++   
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYL 102

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
                   ++V   +   ++ S+    N ++  Y K G+L+ +R +F+ M E+ V+SWNA
Sbjct: 103 SNNKFDCARKVFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNA 158

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ML G++++G   E  ++F+ M  +N+     +++  +LS     G  +    +F   +D 
Sbjct: 159 MLSGFAQNGFVEEARKIFDQMLVKNE-----ISWNGLLSAYVQNGRIEDARRLFDSKMDW 213

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                 EI  + C++    R  R+ +A      MP               ++ +N+ I  
Sbjct: 214 ------EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD------------KISWNIMITG 255

Query: 452 FV-------GQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +         +RL E  P  +   +  + + +   G  ++ TR+ E M EK
Sbjct: 256 YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 344/572 (60%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L++   N   LR GQ +H  + K  +     +   LI+ Y K  C+ D  K+F+ M   
Sbjct: 157 SLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNP 216

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSW A++S +           +F +ML    +PN FTF +VL SC+     E GKQ+H
Sbjct: 217 DLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVH 276

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + IIK++ +   +VG++L+DMYAKA  + +A   F+ L  RD+ S T IISGYAQ    E
Sbjct: 277 AHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAE 336

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A++ FR++Q EG+  N  T AS L+  S +A L +G+Q+H+  ++      + + ++L+
Sbjct: 337 KAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALV 396

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D+Y KCG + ++  +F  +  R ++SWN ++ GYS+HG G + +E F +M  E  + PD 
Sbjct: 397 DLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEG-IMPDE 455

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T++ VLS CS  G+ + G   F  +     G  P IEHY C+VD+LGRAG+  E   FI
Sbjct: 456 ATFIGVLSACSFMGLVEEGKKRFDSMSKIY-GINPSIEHYACMVDILGRAGKFNEVKIFI 514

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + M   P + I  ++LGAC++H NVD GE   ++L E+EP    +Y++LSN++AS GRW+
Sbjct: 515 EEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWD 574

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV  +R LM  + + K+PG SW+E+D  +H F + D SHP   E+ AK+ +L       G
Sbjct: 575 DVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIG 634

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVP    VL++V  ++K + L  HSE+LAL+F L+ T    PIR+ KNLRIC DCH+F K
Sbjct: 635 YVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMK 694

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +S +  +++ +RD  RFHH   GTCSC D W
Sbjct: 695 LISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 189/373 (50%), Gaps = 5/373 (1%)

Query: 55  EMRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           E +F ++   T+L  C N  +LR G+ +HA  +++      +L   L+  Y+KC  + DA
Sbjct: 46  ETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDA 105

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            K+F ++R  +VV+W+AMI+   Q+ H  EA  LF  M R    PN+FT ++++++    
Sbjct: 106 LKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNM 165

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
                G+ IH  I K  FES   V + L+ MY K+  + +   VFE +   D+VS  A++
Sbjct: 166 GDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALL 225

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           SG+           +F ++ +EG   N  T+ SVL + S L     GKQVH+H+++    
Sbjct: 226 SGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD 285

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
               +  +L+DMY+K   L  +   FD +  R + SW  ++ GY++     + V+ F  M
Sbjct: 286 DDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQM 345

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           + E  +KP+  T  + LSGCSH    + G  +    V  K G   +I     +VD+ G+ 
Sbjct: 346 QREG-IKPNEYTLASCLSGCSHMATLENGRQL--HAVAVKAGHFGDIFVGSALVDLYGKC 402

Query: 413 GRVGEALEFIKNM 425
           G +  A    K +
Sbjct: 403 GCMEHAEAIFKGL 415



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 148/267 (55%), Gaps = 6/267 (2%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  +   +M   G +     + ++L +C +      G++VHAH+IK       ++ T L
Sbjct: 235 GRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTAL 294

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y K  CL DA   FD +  R++ SWT +IS Y+Q   + +A+  F +M R   +PNE
Sbjct: 295 VDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNE 354

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           +T A+ L+ C+     E G+Q+H++ +K+     I+VGS+L+D+Y K G +  A  +F+ 
Sbjct: 355 YTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKG 414

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           L  RD+VS   IISGY+Q G  E+A+E FR +  EG++ +  T+  VL+A S +  +  G
Sbjct: 415 LISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEG 474

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           K+      RF+  S +   N  I+ Y+
Sbjct: 475 KK------RFDSMSKIYGINPSIEHYA 495



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 149/263 (56%), Gaps = 3/263 (1%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A ++F  M E+N VSW A+++ Y+Q     + L LF +M   +T+ ++FT +TVL  CA 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 GK +H+L ++S  E   ++G SL+DMY+K G +++A  VF  +   DVV+ +A+
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+G  Q G  +EA ELF  ++ +G   N  T +S+++  + +  L +G+ +H  + ++  
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG-YSKHGMGREVVELFN 350
            S  ++ N LI MY K   +    +VF+ M+   ++SWNA+L G Y     GR     + 
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 351 LMREENKVKPDSVTYLAVLSGCS 373
           ++ E    KP+  T+++VL  CS
Sbjct: 244 MLLE--GFKPNMFTFISVLRSCS 264


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 358/590 (60%), Gaps = 5/590 (0%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           I M  +G+ +    Y  +L  C ++     G+ VH  +++T +   +++   L+  Y KC
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC 180

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             + DA ++FD M  R+VV WTAMI+ Y Q     +AL LF +M       +E T  +V 
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++        +   +H   + + F   + VG+S++ MYAK G +  AR VF+ + ER+ +
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +++SGY Q G   +A+ LF ++Q      N VT   +++A S L +   G+++H+ V
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 360

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGRE 344
           +  ++     L+N+++DMY KCG L  +  +F+N  + ER V SWN ++ GY  HG G+E
Sbjct: 361 ISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKE 420

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            +ELF+ M+ E  V+P+ +T+ ++LS CSH G+ D G   F ++   K    PE++HY C
Sbjct: 421 ALELFSRMQVEG-VEPNDITFTSILSACSHAGLIDEGRKCFADMT--KLSVRPEMKHYAC 477

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VDMLGRAG + EA   IK +P  P+  + G+LL ACR+H N ++GE     L ++EPE+
Sbjct: 478 MVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEH 537

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            G YV++SN+YA++ +W++V  VR+ MK + + K    S IE    +H FH +D+S P  
Sbjct: 538 TGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYY 597

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
            E+  KV+ L+++ K  GYVPD+SCVL+DV+ E KE +L  HSEKLA+ FG++   +G P
Sbjct: 598 REVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMP 657

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I+V KNLR+C DCH   KF+S +YGRK+ +RD NRFHH   G CSCGDYW
Sbjct: 658 IQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 17/374 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           YD LL  C +  TL+    +H+ +    +    P +L  RLI+ Y+K   L  AR +FD 
Sbjct: 28  YDHLLQCCTSLTTLK---LIHSSLSTRGFLLHTPHFL-ARLIILYSKLGDLHSARTLFDH 83

Query: 119 M--------RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
                    +  N      M+ AY+    S+EA++L+I M R     N FT+  VL  CA
Sbjct: 84  RHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA 143

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
              G   G+ +H  ++++ F S ++V ++L+DMYAK G I +A  VF+ +  RDVV  TA
Sbjct: 144 SELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTA 203

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+ Y Q     +A+ LFRK+Q EG + + +T  SV +A+  L        VH + +   
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNG 263

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
               V + NS++ MY+KCG++  +R VFD M ER  ISWN+ML GY+++G   + + LFN
Sbjct: 264 FIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 323

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M + ++  P+ VT L ++S CS+ G +  G  + + ++  K   +  + +   ++DM  
Sbjct: 324 QM-QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYM 380

Query: 411 RAGRVGEALEFIKN 424
           + G +  A+E   N
Sbjct: 381 KCGDLDTAVEMFNN 394


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/635 (35%), Positives = 386/635 (60%), Gaps = 10/635 (1%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE 60
           +R+ ++ SR  S L+F+     +  FP +P          QL       +          
Sbjct: 6   IRKTQETSRILSILSFS-----LNLFPVSPYYFLHQSFATQLIPQHKVDSFPSSPSNHYY 60

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +LL +C++ + L  G+++HA + +      + L T+L+ FY+ C  L +A  +FD++ 
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + N+  W  +I AY+       A++L+ +ML    +P+ FT   VL +C+       G+ 
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  +I+S +E  ++VG++L+DMYAK G + +AR VF+ + +RD V   ++++ YAQ G 
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E++ L  ++  +G+     T  +V+++ + +A L HG+++H    R        ++ +
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTA 300

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+KCGS+  +  +F+ + E+ V+SWNA++ GY+ HG+  E ++LF  M +E   +P
Sbjct: 301 LIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKE--AQP 358

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           D +T++  L+ CS G + D G A+++ +V DC+    P +EHY C+VD+LG  G++ EA 
Sbjct: 359 DHITFVGALAACSRGRLLDEGRALYNLMVRDCR--INPTVEHYTCMVDLLGHCGQLDEAY 416

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I+ M   P + + G+LL +C+ H NV++ E   ++L+E+EP+++GNYVIL+N+YA +G
Sbjct: 417 DLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSG 476

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE V R+R+LM +K + K+   SWIE+   ++ F + D SHP    + A++K+L    +
Sbjct: 477 KWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMR 536

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           EAGYVPD   V +DV+E++K  ++  HSE+LA+ FGLI T  G  + + KNLRIC DCH 
Sbjct: 537 EAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHV 596

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SK+  R++++RD NR+HH   G CSCGDYW
Sbjct: 597 AIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/597 (39%), Positives = 360/597 (60%), Gaps = 14/597 (2%)

Query: 49  MATLGLEM-----------RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           MA + LEM            F    ++L A    R +  G+ +H + +++ +   V + T
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC  L  AR++FD M ERNVVSW +MI AY Q  +  EA+ +F +ML    +P
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP 335

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
            + +    L +CA     E G+ IH L ++   + ++ V +SL+ MY K   +  A  +F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
             L  R +VS  A+I G+AQ G   +A+  F +++   +  +  TY SV+TA++ L+   
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH 455

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           H K +H  V+R  +   V +  +L+DMY+KCG++  +R +FD MSER V +WNAM+ GY 
Sbjct: 456 HAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG G+  +ELF  M ++  +KP+ VT+L+V+S CSH G+ + GL  F+ + +     E 
Sbjct: 516 THGFGKAALELFEEM-QKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE-NYSIEL 573

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            ++HYG +VD+LGRAGR+ EA +FI  MP +P   + G++LGAC++H NV+  E   +RL
Sbjct: 574 SMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERL 633

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            E+ P++ G +V+L+N+Y +A  WE V +VR  M  + + K PG S +E+   +H+F + 
Sbjct: 634 FELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSG 693

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
             +HP  +++ A +++L    KEAGYVPD + VL  V+ + KE++L  HSEKLA++FGL+
Sbjct: 694 STAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLL 752

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G  I V KNLR+C DCHN  K++S V GR++ +RD  RFHH   G CSCGDYW
Sbjct: 753 NTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 192/360 (53%), Gaps = 13/360 (3%)

Query: 22  TVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           TVP  P  P   +   S      A +      L         LL  C + + LR   ++ 
Sbjct: 10  TVPQIPNPPSRHRHFLSERNYIPANVYEHPAAL---------LLERCSSLKELR---QIL 57

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
             + K       + +T+L+  + +   + +A ++F+ +  +  V +  M+  +++ +   
Sbjct: 58  PLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLD 117

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +AL  F+RM   D EP  + F  +L  C       +GK+IH L++KS F   ++  + L 
Sbjct: 118 KALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE 177

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           +MYAK  +++EAR VF+ +PERD+VS   I++GY+Q G+   A+E+ + +  E +  +++
Sbjct: 178 NMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T  SVL A+S L  +  GK++H + +R    S V +  +L+DMY+KCGSL  +R++FD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            ER V+SWN+M+  Y ++   +E + +F  M +E  VKP  V+ +  L  C+  G  +RG
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG-VKPTDVSVMGALHACADLGDLERG 356


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 346/574 (60%), Gaps = 3/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     L  G+RVH  + +  +   V+++  L+  Y KC  +  A  +F  + 
Sbjct: 176 FPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLV 235

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R +VSWT++IS Y+Q     EAL +F  M +++  P+     +VL +       E GK 
Sbjct: 236 DRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  +IK   E    +  SL  +YAK G +  AR  F  +    ++   A+ISGY + G 
Sbjct: 296 IHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGY 355

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEAIELFR ++ + +  + +T  S + A + + +L   + +  ++   E  + V++  S
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTS 415

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LID Y+KCGS+  +R VFD + ++ V+ W+AM+VGY  HG GRE + LF+ MR+   V P
Sbjct: 416 LIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAG-VSP 474

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT++ +L+ C + G+ + G  +FH + D   G EP  +HY CVVD+LGRAG +  A  
Sbjct: 475 NDVTFVGLLTACKNSGLVEEGWDLFHRMRDY--GIEPRHQHYACVVDLLGRAGHLDRAYN 532

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           F+ NMP EP  ++ G+LL AC++H +V +GE+  +RL  ++P N G+YV LSNLYAS+  
Sbjct: 533 FVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCL 592

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+ V +VR LM+EK +TK  G S IE++  L  F A D++HP  +E+  +V+ L  + KE
Sbjct: 593 WDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKE 652

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AG+VP    VL+D++ E+ E+ L  HSE+LA+ +GLI TP G  +R+ KNLR C +CH  
Sbjct: 653 AGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAA 712

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +SK+  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 713 IKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 14/386 (3%)

Query: 1   MRRPKKQSRAFSSL---TFTQQQLTVPSFPPNPQNLKTL----CSNGQLTKALIEMATLG 53
           + RP  +  +F +L    F  + L  P F      LK L     S+  LT          
Sbjct: 8   LTRPPNKVSSFIALCPQPFKIRPLDPPPFRFPASTLKFLETHYSSSLNLTTHFNNNKDDC 67

Query: 54  LEMRFEE---YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
            E  F+    Y +L++  +++  L    +++A ++ T  +   +L  +L+   +    +S
Sbjct: 68  NESTFKPDKFYASLIDDSIHKTHL---NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVS 124

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            ARK+FD+  + +V  W A++  YS+      A+ ++ RM  +   P+ F+F  VL +C+
Sbjct: 125 CARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACS 184

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                E+G+++H  I +  FES ++V + L+ +YAK G I  A  VF  L +R +VS T+
Sbjct: 185 ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTS 244

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           IISGYAQ G   EA+ +F +++   +  +++   SVL A + +  L HGK +H  V++  
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +     L  SL  +Y+KCG +  +R  F+ +   ++I WNAM+ GY K+G   E +ELF 
Sbjct: 305 LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGG 376
           LM+ +N ++PDS+T  + ++ C+  G
Sbjct: 365 LMKSKN-IRPDSITVTSSIAACAQIG 389


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 341/557 (61%), Gaps = 3/557 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           ++VH H IK       ++ T LI  Y++  C+ +A  +F E    ++V+W AM++ Y+Q 
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQS 495

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               + L LF  M +     ++FT ATV  +C   F    GKQ+H+  IKS ++  ++V 
Sbjct: 496 HDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           S +LDMY K G +  A+  F+ +P  D V+ T +ISG  + G +E A  +F ++++ G++
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL 615

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T A++  A S L AL  G+Q+H++ L+    +   +  SL+DMY+KCGS+  +  +
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCL 675

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +    + +WNAMLVG ++HG G+E ++LF  M+    +KPD VT++ VLS CSH G+
Sbjct: 676 FKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLG-IKPDKVTFIGVLSACSHSGL 734

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
                     +     G +PEIEHY C+ D LGRAG V +A   I++M  E +A++  +L
Sbjct: 735 VSEAYKHMRSM-HGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           L ACRV  + + G+ V  +L+E+EP ++  YV+LSN+YA+A +W+++   R +MK   V 
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVK 853

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           KDPG SWIE+   +H F   DRS+   E +  KVK +    K+ GYVP+    L DV+EE
Sbjct: 854 KDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEE 913

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE+ L  HSEKLA+ FGL+ TP   PIRVIKNLR+C DCHN  K+++KVY R++ LRD 
Sbjct: 914 EKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDA 973

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFH   +G CSCGDYW
Sbjct: 974 NRFHRFKDGICSCGDYW 990



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 9/401 (2%)

Query: 42  LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101
           L K   +M    +E     +  +L   V   +L  GQ+VH   +K      + +   LI 
Sbjct: 299 LLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLIN 358

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y K      AR +FD M ER+++SW ++I+  +Q     EA+ LF+++LR   +P+++T
Sbjct: 359 MYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418

Query: 162 FATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
             +VL + +    G  L KQ+H   IK N  S  +V ++L+D Y++   + EA  +FE  
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE-R 477

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
              D+V+  A+++GY Q     + ++LF  +  +G  S+  T A+V      L A+  GK
Sbjct: 478 HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGK 537

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           QVH++ ++      + + + ++DMY KCG ++ ++  FD++     ++W  M+ G  ++G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597

Query: 341 MGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                  +F+ MR    V PD  ++  LA  S C     + R +      ++C +  +P 
Sbjct: 598 EEERAFHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTN--DPF 654

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
           +     +VDM  + G + +A    K +      A    L+G
Sbjct: 655 VG--TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVG 693



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 165/346 (47%), Gaps = 28/346 (8%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           +S Y         L  F  M+ SD E ++ TF  +L +        LG+Q+H + +K   
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +  + V +SL++MY K  +   AR VF+ + ERD++S  ++I+G AQ GL+ EA+ LF +
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406

Query: 251 LQVEGMISNYVTYASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS--- 306
           L   G+  +  T  SVL A S L   L   KQVH H ++    S   +  +LID YS   
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466

Query: 307 --KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
             K   + + R  FD      +++WNAM+ GY++   G + ++LF LM ++ + + D  T
Sbjct: 467 CMKEAEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE-RSDDFT 519

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
              V   C      ++G  V    +  K G++ ++     ++DM  + G +  A     +
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAI--KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGE-------FVGQRLMEIEPE 463
           +P  P      +++  C     ++ GE       F   RLM + P+
Sbjct: 578 IPV-PDDVAWTTMISGC-----IENGEEERAFHVFSQMRLMGVLPD 617



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 144/265 (54%), Gaps = 9/265 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+   C     +  G++VHA+ IK+ Y   +++ + ++  Y KC  +S A+  FD +   
Sbjct: 522 TVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP 581

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+WT MIS   +      A ++F +M      P+EFT AT+  + +     E G+QIH
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +  +K N  +  +VG+SL+DMYAK G I +A  +F+ +   ++ +  A++ G AQ G  +
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTAL--SGLA--ALGHGKQVH-SHVLRFEIPSYVVL 297
           E ++LF++++  G+  + VT+  VL+A   SGL   A  H + +H  + ++ EI  Y  L
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMS 322
            ++L     + G +  +  + ++MS
Sbjct: 762 ADAL----GRAGLVKQAENLIESMS 782



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 170/381 (44%), Gaps = 56/381 (14%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            L   +    L  G+  HA ++     P  +L   LI  Y+KC  L+ AR++FD+M +R+
Sbjct: 45  FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104

Query: 124 VVSWTAMISAYSQKAH----SFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELG 178
           +VSW ++++AY+Q +     + +   L  R+LR D    +  T + +L  C  +      
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS 164

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +  H    K   +   +V  +L+++Y K G++ E + +FE +P RDVV    ++  Y ++
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSG-------LAALGHGKQVHSHVLRFEI 291
           G  EEAI+L       G+  N +T   +L  +SG       + +  +G    S       
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITL-RLLARISGDDSDAGQVKSFANGNDASS------- 276

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--------------TVISWNAMLVGYS 337
            S ++ +N  +  Y   G  +   + F +M E               T +  +++ +G  
Sbjct: 277 VSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQ 336

Query: 338 KHGMG------------REVVELFNLMRE--------ENKVKPDSVTYLAVLSGCSHGGM 377
            H M               ++ ++  +R+        +N  + D +++ +V++G +  G+
Sbjct: 337 VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396

Query: 378 EDRGLAVFHEIVDCKDGFEPE 398
           E   + +F +++ C  G +P+
Sbjct: 397 EVEAVCLFMQLLRC--GLKPD 415



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 8/154 (5%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK  H+ +L FE      L N+LI MYSKCGSLTY+RRVFD M +R ++SWN++L  Y++
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 339 HGMG-----REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
                    ++   LF ++R++  V    +T   +L  C H G        FH    CK 
Sbjct: 118 SSECVVENIQQAFLLFRILRQD-VVYTSRMTLSPMLKLCLHSGYV-WASESFHGYA-CKI 174

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           G + +    G +V++  + G+V E     + MP+
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPY 208


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 352/558 (63%), Gaps = 37/558 (6%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCA 170
           A+  F++M ER+VVSW AMIS Y+Q     EAL++F +ML  S ++P++FT A+ L++CA
Sbjct: 230 AQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACA 289

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG---------------------- 208
                +LGKQIH+ II++ F++   VG++L+ MY+K+G                      
Sbjct: 290 NLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAF 349

Query: 209 -----------RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
                       I+ AR +F+ L  RDVV+ TA+I GY Q G +++A+ELFR +  EG  
Sbjct: 350 TALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPK 409

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N  T A++L+  S LA+L HG+Q+H+   R    S V + N+LI MY+K GS+  +R V
Sbjct: 410 PNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWV 469

Query: 318 FDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           F+ +  +R  I+W +M++  ++HG+G E + LF  M E N +KPD +TY+ VLS C+H G
Sbjct: 470 FNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLE-NGIKPDHITYVGVLSACTHVG 528

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + ++G + ++ ++       P   HY C++D+ GRAG + EA  FI+NMP EP     GS
Sbjct: 529 LVEQGRS-YYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGS 587

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +C+VH NV++ E   +RL+ IEPEN+G Y  L+N+Y++ G+WE+   +R+ MK+K V
Sbjct: 588 LLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            KD G SW+++   +H F   D  HP R+ +   + ++  + K+ G+VPD   VL+D++E
Sbjct: 648 KKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEE 707

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E KE++L  HSEKLA+ FGLI TPE   +R++KNLR+C DCH+  KF+SK+ GR++ +RD
Sbjct: 708 ELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRD 767

Query: 617 KNRFHHIVEGTCSCGDYW 634
             RFHH   G CSC DYW
Sbjct: 768 ATRFHHFKNGLCSCRDYW 785



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 205/456 (44%), Gaps = 99/456 (21%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           + Y + L   +  +    G+ +HA +IK      V+L   L+ FY K   + DA ++FDE
Sbjct: 14  DPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDE 73

Query: 119 MRERNV-------------------------------VSWTAMISAYSQKAHSFEALNLF 147
           M  ++V                               VSWTAMI  Y+Q      A+ +F
Sbjct: 74  MPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMF 133

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
             M+  D  P +FT   VL SCA      +G+++HS ++K    S+I V +SLL+MYAK+
Sbjct: 134 REMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKS 193

Query: 208 GRIHEARGV-------------------------------FECLPERDVVSCTAIISGYA 236
           G    A+ V                               FE + ERDVVS  A+ISGY 
Sbjct: 194 GDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYN 253

Query: 237 QLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           Q G D EA+++F K+ ++     +  T AS L+A + L  L  GKQ+H+H++R E  ++ 
Sbjct: 254 QHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFG 313

Query: 296 VLQNSLIDMYSKC---------------------------------GSLTYSRRVFDNMS 322
            + N+LI MYSK                                  G +  +RR+FD++ 
Sbjct: 314 AVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLR 373

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            R V++W AM+VGY ++G  ++ +ELF  M +E   KP++ T   +LS  S     D G 
Sbjct: 374 VRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGP-KPNNYTLATMLSVSSSLASLDHGR 432

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            +       + G    +     ++ M  ++G + +A
Sbjct: 433 QIHASAT--RSGNASSVSVSNALITMYAKSGSINDA 466



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 161/314 (51%), Gaps = 42/314 (13%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRP--------------------------------- 91
           L+AC N   L+ G+++HAH+I+T +                                   
Sbjct: 285 LSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNL 344

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
            V   T L+  Y K   ++ AR++FD +R R+VV+WTAMI  Y Q   + +A+ LF  M+
Sbjct: 345 DVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           +   +PN +T AT+L+  +     + G+QIH+   +S   S + V ++L+ MYAK+G I+
Sbjct: 405 KEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIN 464

Query: 212 EARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
           +AR VF  +  +RD ++ T++I   AQ GL EEA+ LF ++   G+  +++TY  VL+A 
Sbjct: 465 DARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSAC 524

Query: 271 SGLAALGHGKQVHSHVLR----FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERT 325
           + +  +  G+  ++ +         PS+      +ID++ + G L  +    +NM  E  
Sbjct: 525 THVGLVEQGRSYYNLMQNAHKIIPTPSHYA---CMIDLFGRAGLLQEAHAFIENMPIEPD 581

Query: 326 VISWNAMLVGYSKH 339
           VI+W ++L     H
Sbjct: 582 VIAWGSLLASCKVH 595


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/574 (40%), Positives = 352/574 (61%), Gaps = 2/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC   + LR G++VHA ++K+ ++   ++   LI  Y  C  +  AR +FD M 
Sbjct: 124 FSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMP 183

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER++V+W +M+S Y++     E + LF ++L    E ++ T  +VL +C      E+G+ 
Sbjct: 184 ERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGEL 243

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I   I+      +  + +SL+DMYAK G++  AR +F+ + +RDVV+ +A+ISGYAQ   
Sbjct: 244 IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADR 303

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EA+ LF ++Q   +  N VT  SVL + + L A   GK VH ++ + ++   V L   
Sbjct: 304 CKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ 363

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LID Y+KCG +  S  VF  MS + V +W A++ G + +G G+  +E F+ M E N VKP
Sbjct: 364 LIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLE-NDVKP 422

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT++ VLS CSH  + D+G  +F+ +    D  EP IEHYGC+VD+LGRAG + EA +
Sbjct: 423 NDVTFIGVLSACSHACLVDQGRHLFNSMRRDFD-IEPRIEHYGCMVDILGRAGFLEEAYQ 481

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI NMPF P A +  +LL +CR H N+++ E   + +  +EP ++G+Y++LSN YA  GR
Sbjct: 482 FIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGR 541

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
            ED  RVR L+KEK + K PG S IELD ++H F + D  H   +E+   + ++  + K 
Sbjct: 542 VEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKR 601

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVP+      + +EE KE  +  HSEKLA+ +GLI T     IR+ KNLR+C DCHN 
Sbjct: 602 LGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNA 661

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+S+V+ R + +RD+NRFHH  +G CSC DYW
Sbjct: 662 TKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 203/370 (54%), Gaps = 14/370 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSD----ARKMFDE 118
           +L  C   +T +  Q+VHAH++KT     P+       V  +    L D    A  +F+ 
Sbjct: 27  ILQQC---KTPKDLQQVHAHLLKTRRLLDPIITEA---VLESAALLLPDTIDYALSIFNH 80

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           + +    ++  MI   + K     AL LF +M     + ++FTF++VL +C+       G
Sbjct: 81  IDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREG 140

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +Q+H+LI+KS F+S+ +V ++L+ MYA  G+I  AR VF+ +PER +V+  +++SGY + 
Sbjct: 141 EQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           GL +E ++LFRK+    +  + VT  SVL A   LA L  G+ +  +++   +     L 
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLT 260

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SLIDMY+KCG +  +R++FD M +R V++W+AM+ GY++    +E + LF+ M++ N V
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGN-V 319

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+ VT ++VL  C+  G  + G  V   I   K   +  +     ++D   + G +  +
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETGKWVHFYIK--KKKMKLTVTLGTQLIDFYAKCGYIDRS 377

Query: 419 LEFIKNMPFE 428
           +E  K M F+
Sbjct: 378 VEVFKEMSFK 387



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 54  LEMRFEEYD----TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           LE+R E  D    ++L AC     L  G+ +  +++    R    L T LI  Y KC  +
Sbjct: 214 LELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQV 273

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
             ARK+FDEM +R+VV+W+AMIS Y+Q     EALNLF  M + +  PNE T  +VL SC
Sbjct: 274 DTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSC 333

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A    +E GK +H  I K   +  + +G+ L+D YAK G I  +  VF+ +  ++V + T
Sbjct: 334 AMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWT 393

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR- 288
           A+I G A  G  + A+E F  +    +  N VT+  VL+A S    +  G+ + + + R 
Sbjct: 394 ALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRD 453

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           F+I   +     ++D+  + G L  + +  DNM      + W  +L     H
Sbjct: 454 FDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH 505


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/629 (38%), Positives = 363/629 (57%), Gaps = 34/629 (5%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C N  ++    EM   G+      Y  LL        ++ G+ +H H++K  +   V+++
Sbjct: 99  CPNSAVS-MYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQ 157

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LI  Y+    +S AR +FD   + +VV+W  MIS Y++     E++ LF  M R    
Sbjct: 158 NALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVL 217

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+  T  +VL++C+      +GK++H  +     E    + ++L+DMYA  G +  A G+
Sbjct: 218 PSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGI 277

Query: 217 FEC-------------------------------LPERDVVSCTAIISGYAQLGLDEEAI 245
           F+                                +PERD VS TA+I GY Q+   +E +
Sbjct: 278 FDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVL 337

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
            LFR++Q   +  +  T  S+LTA + L AL  G+ + +++ + EI     + N+LIDMY
Sbjct: 338 SLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMY 397

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
             CG++  + R+F+ M  R  ISW A++ G + +G G E +++F+ M + + + PD VT 
Sbjct: 398 FNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKAS-ITPDEVTC 456

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           + VL  C+H GM D+G   F  +   + G EP + HYGC+VD+LGRAG + EA E IKNM
Sbjct: 457 IGVLCACTHSGMVDKGKKFFARMTT-QHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNM 515

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           P +P + + GSLLGACRVH + ++ E   Q+++E+EPEN   YV+L N+YA+  RWE + 
Sbjct: 516 PVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLH 575

Query: 486 RVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
            VR+LM ++ + K PG S IE++  +H F A D+ HP  +E+ +K+ ++SV  K AGY P
Sbjct: 576 EVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSP 635

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           D S V  D+ EE+KE  +  HSEKLA+ FGLI +  G  IR++KNLR+CVDCH  AK VS
Sbjct: 636 DTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVS 695

Query: 606 KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KVY R+V +RD+ RFHH   G+CSC DYW
Sbjct: 696 KVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 204/413 (49%), Gaps = 49/413 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---ARKMFDEM 119
           +L+  C +   L+   ++H+  I T       +  ++I F  K E L D   AR +FD M
Sbjct: 24  SLIKTCKSMAQLK---QIHSQTICTGLISNPIVPAQIIAFCCKHE-LGDMEYARMVFDTM 79

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              N   W  MI  YS+      A++++  ML     P+E+T+  +L         + G+
Sbjct: 80  PGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGR 139

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H  I+K  F S+++V ++L+ +Y+ +G +  ARGVF+   + DVV+   +ISGY +  
Sbjct: 140 ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSK 199

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             +E+++LF +++   ++ + +T  SVL+A S L  L  GK+VH +V   +I    VL+N
Sbjct: 200 QFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLEN 259

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG----------------- 342
           +LIDMY+ CG +  +  +FDNM  R VISW A++ G++  G                   
Sbjct: 260 ALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVS 319

Query: 343 --------------REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
                         +EV+ LF  M+  N +KPD  T +++L+ C+H G  + G  +   I
Sbjct: 320 WTAMIDGYLQVNRFKEVLSLFREMQAAN-IKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 389 VDCKDGFEPEIEHY--GCVVDMLGRAGRVGEALEFIKNMPFEP----TAAILG 435
               D  E +I+ +    ++DM    G V +A+     MP       TA I G
Sbjct: 379 ----DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/536 (41%), Positives = 343/536 (63%), Gaps = 11/536 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS+AR++F+E+  R+V +WTAM+S + Q     EA  +F  M     E N
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKN 307

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  ++     +   E  +++   +   N  S     ++++  YA+ G I +A+ +F+
Sbjct: 308 EVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW----NTMVTGYAQCGNIDQAKILFD 363

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD +S  A+ISGYAQ G  EEA+ LF K++ +G I N    A  L++ + +AAL  
Sbjct: 364 EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL 423

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H  +++    +  +  N+L+ MY KCGS+  +  VF++++E+ ++SWN M+ GY++
Sbjct: 424 GKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYAR 483

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G+E + LF  M+    +KPD VT + VLS CSH G  D+G+  F+ +     G    
Sbjct: 484 HGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQ-NYGITAN 540

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            +HY C++D+LGRAGR+ EAL  +K+MPF P AA  G+LLGA R+H + ++GE   +++ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EP+N+G YV+LSNLYA++GRW +V  +R  M++K V K PG SW+E+    H F   D
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            SHP  E + A +++L ++ K+ G+V     VL+DV+EE+KE +L  HSEKLA+ FG++ 
Sbjct: 661 CSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILS 720

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            P G PIRVIKNLR+C DCHN  K +SK+  R++ +RD NRFHH  EG+CSCGDYW
Sbjct: 721 IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 180/396 (45%), Gaps = 40/396 (10%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y K   LS AR +F++M E++VVSW AM+S ++Q     EA  +F +ML      NE ++
Sbjct: 132 YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISW 187

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             +L++       E  ++    +  S  +  I   + L+  Y +  R+ +AR +F+ +P 
Sbjct: 188 NGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV 243

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYVTYASVLTALSGLAAL 276
           RD +S   +I+GYAQ GL  EA  LF +L +        M+S +V    +  A      +
Sbjct: 244 RDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM 303

Query: 277 GHGKQVHSHVLRFEIPSYVVLQ--------------------NSLIDMYSKCGSLTYSRR 316
               +V  + +   I  YV  Q                    N+++  Y++CG++  ++ 
Sbjct: 304 PEKNEVSWNAM---IAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD M +R  ISW AM+ GY++ G   E + LF  M+ +  +   S    A LS C+   
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA-LSSCAEIA 419

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
             + G  +   +V  K GF+        ++ M G+ G + EA +  +++  +   +    
Sbjct: 420 ALELGKQLHGRLV--KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTM 477

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           + G  R  +  +         M I+P++     +LS
Sbjct: 478 IAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 174/366 (47%), Gaps = 35/366 (9%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + ++V W   ISAY +K     AL++F  M R  T     T+  +++       F+  ++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK 112

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +   +   +  S     + +L  Y K G +  AR +F  +PE+DVVS  A++SG+AQ G 
Sbjct: 113 VFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA ++F ++    ++ N +++  +L+A      +   +++    + +EI S+    N 
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSW----NC 220

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+  Y +   L  +R +FD M  R  ISWN M+ GY+++G+  E   LF    EE  ++ 
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF----EELPIR- 275

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH--YGCVVDMLGRAGRVGEA 418
           D   + A++SG    GM D    +F E+        PE     +  ++    ++ ++ +A
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEM--------PEKNEVSWNAMIAGYVQSQQIEKA 327

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            E    MP   T++    + G  +   N+D  + +     E+   +  ++  + + YA +
Sbjct: 328 RELFDQMPSRNTSSWNTMVTGYAQCG-NIDQAKIL---FDEMPQRDCISWAAMISGYAQS 383

Query: 479 GRWEDV 484
           G+ E+ 
Sbjct: 384 GQSEEA 389



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L++C     L  G+++H  ++K  ++        L+  Y KC  + +A  +F+++ E+++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHS 183
           VSW  MI+ Y++     EAL LF  M +   +P++ T   VL++C+     + G +  +S
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +       ++    + ++D+  +AGR+ EA  + + +P
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMP 568



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 39/291 (13%)

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           E++     + + D+V     IS Y + G  E A+ +F  ++        VTY ++++   
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYL 102

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
                   ++V   +   ++ S+    N ++  Y K G+L+ +R +F+ M E+ V+SWNA
Sbjct: 103 SNNKFDCARKVFEKMPDRDLISW----NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNA 158

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ML G++++G   E  ++F+ M  +N+     +++  +LS     G  +    +F   +D 
Sbjct: 159 MLSGFAQNGFVEEARKIFDQMLVKNE-----ISWNGLLSAYVQNGRIEDARRLFDSKMDW 213

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                 EI  + C++    R  R+ +A      MP               ++ +N+ I  
Sbjct: 214 ------EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD------------KISWNIMITG 255

Query: 452 FV-------GQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +         +RL E  P  +   +  + + +   G  ++ TR+ E M EK
Sbjct: 256 YAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/566 (39%), Positives = 351/566 (62%), Gaps = 39/566 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP- 157
           L+  Y +   + +A+KMF++M +R+VVSW  M+S Y+++    EA  LF      D  P 
Sbjct: 268 LMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPI 321

Query: 158 -NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------------------ 192
            + FT+  +++  A     E  K++   +   N  S                        
Sbjct: 322 RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAM 381

Query: 193 ---HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++   +++L  YA+AG + EAR +F  +P++D VS  A+++ Y+Q+G  EE ++LF+
Sbjct: 382 PCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFK 441

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G   N   +A VL+  + +AAL  G Q+HS +++        + N+L+ MY KCG
Sbjct: 442 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCG 501

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  +   F+ M ER V+SWN M+ GY++HG G+E +E+F+ MR+    KPD +T + VL
Sbjct: 502 SMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRK-TSTKPDDITLVGVL 560

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           + CSH G+ ++G++ F+ +   +D G   + EHY C++D+LGRAGR+ EA+  +K+MPFE
Sbjct: 561 AACSHSGLVEKGISYFYSM--HRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFE 618

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           P + + G+LLGA R+H N ++G    +++ E+EPENAG YV+LSN+YAS+G+W DV ++R
Sbjct: 619 PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMR 678

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
            +M E+ V K PG SWIE+   +HTF   D  HP RE++ A ++ L ++ K+AGYV    
Sbjct: 679 HIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATD 738

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
            VL+DV+EE+KE +L  HSEKLA+ +G++  P G PIRVIKNLR+C DCH   K +S + 
Sbjct: 739 MVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIE 798

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GR + LRD NRFHH  +G+CSCGDYW
Sbjct: 799 GRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 155/321 (48%), Gaps = 23/321 (7%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM-IKTCYRP 91
           L    +NG+L +AL    ++     F  Y+TLL+A     +L   + +   M +K     
Sbjct: 145 LAGYAANGRLPQALSFFRSIPRPDSFS-YNTLLHALGVSSSLADVRALFDEMPVKDSVSY 203

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
            V     +I  +     +S AR  FD   E++ VSW  M++AY +     EA  LF    
Sbjct: 204 NV-----MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF---- 254

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
            S TE +  ++  ++         E  +++ + + + +  S     ++++  YA+ G + 
Sbjct: 255 DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSW----NTMVSGYARRGDMA 310

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           EAR +F+  P RDV + TAI+SGYAQ G+ EEA  +F  +  +    N V++ +++ A  
Sbjct: 311 EARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYV 366

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
               +   K++   +    + S+    N+++  Y++ G L  +R +F  M ++  +SW A
Sbjct: 367 QRRMMEEAKELFDAMPCRNVASW----NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAA 422

Query: 332 MLVGYSKHGMGREVVELFNLM 352
           ML  YS+ G   E ++LF  M
Sbjct: 423 MLAAYSQIGFSEETLQLFKEM 443



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 75/398 (18%)

Query: 72  RTLRGGQRVHAHMIKTCYRPP--------------VYLRTRLIVFYNKCECLSDARKMFD 117
           R LR   R  +H      RPP              V  R R I  + +   + DA ++F 
Sbjct: 77  RHLRAAARQRSHR-----RPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFA 131

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-E 176
            M  R+  ++  M++ Y+      +AL+ F    RS   P+ F++ T+L +   +    +
Sbjct: 132 AMPRRSTSTYNTMLAGYAANGRLPQALSFF----RSIPRPDSFSYNTLLHALGVSSSLAD 187

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +      + +K +   ++ + S     +A  G +  AR  F+  PE+D VS   +++ Y 
Sbjct: 188 VRALFDEMPVKDSVSYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYV 242

Query: 237 QLGLDEEAIELFRK------LQVEGMISNYVTYASVL------------------TALSG 272
           + G  +EA ELF        +    +++ YV  + +                   T +SG
Sbjct: 243 RNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSG 302

Query: 273 LAALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            A  G   +       F++     V    +++  Y++ G L  ++RVFD M ++  +SWN
Sbjct: 303 YARRGDMAEARR---LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWN 359

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+  Y +  M  E  ELF+ M   N       ++  +L+G +  GM D   A+F     
Sbjct: 360 AMMAAYVQRRMMEEAKELFDAMPCRN-----VASWNTMLTGYAQAGMLDEARAIF----- 409

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVG---EALEFIKNM 425
              G  P+ +       ML    ++G   E L+  K M
Sbjct: 410 ---GMMPQKDAVSWAA-MLAAYSQIGFSEETLQLFKEM 443



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G  +    +  +L+ C +   L  G ++H+ +IK  Y    ++   L+  Y KC 
Sbjct: 442 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCG 501

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + +A   F+EM ER+VVSW  MI+ Y++     EAL +F  M ++ T+P++ T   VL 
Sbjct: 502 SMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLA 561

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+ +   E G    +S+       +     + ++D+  +AGR+ EA  + + +P
Sbjct: 562 ACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMP 616



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 139/318 (43%), Gaps = 46/318 (14%)

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           + +AGR+ +A  +F  +P R   +   +++GYA  G   +A+  FR +       +  +Y
Sbjct: 117 HMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSY 172

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            ++L AL   ++L   + +   +   +  SY    N +I  ++  G ++ +R  FD   E
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKDSVSY----NVMISSHANHGLVSLARHYFDLAPE 228

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           +  +SWN ML  Y ++G  +E  ELF+     ++ + D++++ A+++G       +    
Sbjct: 229 KDAVSWNGMLAAYVRNGRIQEARELFD-----SRTEWDAISWNALMAGYVQRSQIEEAQK 283

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----FEPTAAILG---- 435
           +F+++       + ++  +  +V    R G + EA       P    F  TA + G    
Sbjct: 284 MFNKMP------QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQN 337

Query: 436 -----------SLLGACRVHYNVDIGEFVGQRLMEIEPE--------NAGNYVILSNLYA 476
                      ++     V +N  +  +V +R+ME   E        N  ++  +   YA
Sbjct: 338 GMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYA 397

Query: 477 SAGRWEDVTRVRELMKEK 494
            AG  ++   +  +M +K
Sbjct: 398 QAGMLDEARAIFGMMPQK 415


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 348/607 (57%), Gaps = 37/607 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++  AC + R +   +RVH   I+  +   V L   LI  Y KC C   AR +F+ M  R
Sbjct: 83  SVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFR 142

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SWT+M S Y       EAL  F +M  +   PN  T +++L +C      + G+++H
Sbjct: 143 DVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVH 202

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------------- 229
             ++++    +++V S+L++MYA    I +A+ VF+ +  RD VS               
Sbjct: 203 GFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECE 262

Query: 230 ----------------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+I G  Q G  E+A+E+  ++Q  G   N +T  SVL
Sbjct: 263 KGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVL 322

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A + L +L  GKQ+H ++ R      +    +L+ MY+KCG L  SRRVF  M++R  +
Sbjct: 323 PACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTV 382

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWN M++  S HG G E + LF  M +   V+P+SVT+  VLSGCSH  + D GL +F  
Sbjct: 383 SWNTMIIATSMHGNGEEALLLFREMVDSG-VRPNSVTFTGVLSGCSHSRLVDEGLLIFDS 441

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +       EP+ +H+ C+VD+L RAGR+ EA EFIK MP EPTA   G+LLG CRV+ NV
Sbjct: 442 MSR-DHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNV 500

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G     RL EIE +N GNYV+LSN+  SA  W + +  R+LM+++ VTK+PG SWI++
Sbjct: 501 ELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
              +HTF   D+S+   +E+   +  +  K + AGY+P+   VL DVD+E+KE+VL  HS
Sbjct: 561 RNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHS 620

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLA+ FG++     + IRV KNLRIC DCHN  KF++K+ G K+ +RD  RFHH  +G 
Sbjct: 621 EKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGL 680

Query: 628 CSCGDYW 634
           CSC D+W
Sbjct: 681 CSCQDFW 687



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 165/308 (53%), Gaps = 4/308 (1%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           P +L  + I  Y+    L  AR +FD++ + ++ +WT +ISA ++   S EA+  +    
Sbjct: 10  PPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFR 69

Query: 152 RSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
             +  EP++    +V  +CA        K++H   I+  F S + +G++L+DMY K    
Sbjct: 70  HKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS 129

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
             AR VFE +P RDV+S T++ S Y   GL  EA+  FRK+ + G   N VT +S+L A 
Sbjct: 130 EGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPAC 189

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + L  L  G++VH  V+R  +   V + ++L++MY+ C S+  ++ VFD+MS R  +SWN
Sbjct: 190 TDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWN 249

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
            ++  Y  +    + + +F  M  E  V  +  ++ AV+ GC   G  ++ L V   + +
Sbjct: 250 VLITAYFLNKECEKGLSVFGRMMSEG-VGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308

Query: 391 CKDGFEPE 398
              GF+P 
Sbjct: 309 --SGFKPN 314


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/576 (41%), Positives = 350/576 (60%), Gaps = 7/576 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ER 122
           +L A     +LR G+ +H   ++  +   V + T ++  Y KC+C+  AR++FD M   +
Sbjct: 226 VLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVK 285

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIR--MLRSDT-EPNEFTFATVLTSCAGAFGFELGK 179
           N V+W+AM+ AY       EAL LF +  ML+ D    +  T ATV+  CA       G 
Sbjct: 286 NEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGT 345

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H   IKS F   + VG++LL MYAK G I+ A   F  +  RD VS TAIISGY Q G
Sbjct: 346 CLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNG 405

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EE + +F ++Q+ G+     T ASVL A + LA L +G   H + +     +  ++ N
Sbjct: 406 NSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICN 465

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDMY+KCG +  +R+VFD M +R ++SWN M++ Y  HG+G E + LF+ M+ E  +K
Sbjct: 466 ALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEG-LK 524

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD VT++ ++S CSH G+   G   F+ +     G  P +EHY C+VD+L RAG   E  
Sbjct: 525 PDDVTFICLISACSHSGLVAEGKYWFNAMTQ-DFGIIPRMEHYACMVDLLSRAGLFKEVH 583

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI+ MP EP   + G+LL ACRV+ NV++GE V +++ ++ PE+ GN+V+LSN+Y++ G
Sbjct: 584 SFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVG 643

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD-RSHPMREELSAKVKQLSVKF 538
           RW+D  +VR   KE+   K PG SWIE+  ++HTF     RSHP   ++S K+ +L V+ 
Sbjct: 644 RWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEM 703

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K  GY  + S V  DV+EE+KE+VLL HSEKLA+ FG++       I V KNLR+C DCH
Sbjct: 704 KRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCH 763

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              KF+S V  R +++RD +RFHH  +G C+CGD+W
Sbjct: 764 TAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 214/425 (50%), Gaps = 19/425 (4%)

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT-------RLIVFYNKCEC 108
           +  E    LL +C+  ++L  G+ +H H++K  +R      T       +L+  Y  C  
Sbjct: 7   LSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSE 66

Query: 109 LSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
           L  AR +FD+M  R +NVV W  +I AY+      EA++L+ +ML     PN FTF  VL
Sbjct: 67  LKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVL 126

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C+       G++IH  I +   ES++YV ++L+D YAK G + +A+ VF+ + +RDVV
Sbjct: 127 KACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVV 186

Query: 227 SCTAIISGYA-QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           +  ++ISG++   G  +E   L  ++Q   +  N  T   VL A++ + +L HGK++H  
Sbjct: 187 AWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF 245

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGRE 344
            +R      VV+   ++D+Y KC  + Y+RR+FD M   +  ++W+AM+  Y      RE
Sbjct: 246 CVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMRE 305

Query: 345 VVELFN--LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            +ELF   LM +++ +   +VT   V+  C++  + D            K GF  ++   
Sbjct: 306 ALELFCQLLMLKDDVIVLSAVTLATVIRVCAN--LTDLSTGTCLHCYAIKSGFVLDLMVG 363

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG--EFVGQRLMEI 460
             ++ M  + G +  A+ F   M      +    + G  + + N + G   F+  +L  I
Sbjct: 364 NTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQ-NGNSEEGLRMFLEMQLSGI 422

Query: 461 EPENA 465
            PE A
Sbjct: 423 NPEKA 427



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 204/413 (49%), Gaps = 17/413 (4%)

Query: 27  PPNPQN-------LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           P  P+N       ++    NG   +A+    +M   G+      +  +L AC   +    
Sbjct: 78  PHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASE 137

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H  + +      VY+ T L+ FY KC CL DA+++FD+M +R+VV+W +MIS +S 
Sbjct: 138 GREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL 197

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              S++ +   +  +++D  PN  T   VL + A       GK+IH   ++  F   + V
Sbjct: 198 HEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVV 257

Query: 197 GSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-- 253
           G+ +LD+Y K   I  AR +F+ +   ++ V+ +A++  Y       EA+ELF +L +  
Sbjct: 258 GTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLK 317

Query: 254 -EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            + ++ + VT A+V+   + L  L  G  +H + ++      +++ N+L+ MY+KCG + 
Sbjct: 318 DDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIIN 377

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            + R F+ M  R  +S+ A++ GY ++G   E + +F L  + + + P+  T  +VL  C
Sbjct: 378 GAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMF-LEMQLSGINPEKATLASVLPAC 436

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +H      G       + C  GF  +      ++DM  + G++  A +    M
Sbjct: 437 AHLAGLHYGSCSHCYAIIC--GFTADTMICNALIDMYAKCGKIDTARKVFDRM 487



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 21/374 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++  C N   L  G  +H + IK+ +   + +   L+  Y KC  ++ A + F+EM  R
Sbjct: 330 TVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLR 389

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS+TA+IS Y Q  +S E L +F+ M  S   P + T A+VL +CA   G   G   H
Sbjct: 390 DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSH 449

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              I   F +   + ++L+DMYAK G+I  AR VF+ + +R +VS   +I  Y   G+  
Sbjct: 450 CYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGL 509

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSL 301
           EA+ LF  +Q EG+  + VT+  +++A S    +  GK   + + + F I   +     +
Sbjct: 510 EALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACM 569

Query: 302 IDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVG---YSKHGMGREVVELFNLMREENK 357
           +D+ S+ G         + M  E  V  W A+L     Y    +G  V       ++  K
Sbjct: 570 VDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGV------SKKIQK 623

Query: 358 VKPDSVTYLAVLSG--CSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYGCVVDMLG 410
           + P+S     +LS    + G  +D     F +    + GFE       IE  G V   LG
Sbjct: 624 LGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQK---EQGFEKSPGCSWIEISGVVHTFLG 680

Query: 411 RAGRVGEALEFIKN 424
              R    L  I N
Sbjct: 681 GGYRSHPQLTQISN 694



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 18/238 (7%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  +EM   G+        ++L AC +   L  G   H + I   +     +   LI  Y
Sbjct: 412 RMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMY 471

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  +  ARK+FD M +R +VSW  MI AY       EAL LF  M     +P++ TF 
Sbjct: 472 AKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFI 531

Query: 164 TVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            ++++C+       G + F    Q   +I +   E +    + ++D+ ++AG   E    
Sbjct: 532 CLISACSHSGLVAEGKYWFNAMTQDFGIIPR--MEHY----ACMVDLLSRAGLFKEVHSF 585

Query: 217 FECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            E +P E DV    A++S    Y  + L E   +  +KL  E    N+V  +++ +A+
Sbjct: 586 IEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPES-TGNFVLLSNMYSAV 642


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/600 (37%), Positives = 354/600 (59%), Gaps = 30/600 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++ AC     +   + +  ++ +  ++  V L T +I  Y KC C+  AR++FD M E+
Sbjct: 264 TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK 323

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+SW+AMI+AY       +AL+LF  ML S   P++ T A++L +C         +Q+H
Sbjct: 324 NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVH 383

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG--- 239
           +         ++ V + L+  Y+    + +A G+F+ +  RD VS + ++ G+A++G   
Sbjct: 384 AQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYM 443

Query: 240 -------------------------LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
                                       E++ LF K++ EG++ + V   +V+ A + L 
Sbjct: 444 NCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLG 503

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           A+   + +  ++ R +    V+L  ++IDM++KCG +  +R +FD M E+ VISW+AM+ 
Sbjct: 504 AMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIA 563

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            Y  HG GR+ ++LF +M     + P+ +T +++L  CSH G+ + GL  F  + +    
Sbjct: 564 AYGYHGQGRKALDLFPMMLRSG-ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWE-DYS 621

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
              +++HY CVVD+LGRAGR+ EAL+ I++M  E    + G+ LGACR H +V + E   
Sbjct: 622 VRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAA 681

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
             L+E++P+N G+Y++LSN+YA+AGRWEDV + R+LM ++ + K PG +WIE+D   H F
Sbjct: 682 TSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQF 741

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
              D +HP  +E+   +K L  K +  GYVPD + VL+DVDEE K  +L  HSEKLA+ F
Sbjct: 742 SVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAF 801

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GLI TPE  PIR+IKNLR+C DCH F K VS + GR + +RD NRFHH  EG CSCGDYW
Sbjct: 802 GLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 160/308 (51%), Gaps = 22/308 (7%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           ++A VN R L   ++VHA          + +  +LI FY+    L DA  +FD M  R+ 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW+ M+  +++          F  ++R    P+ +T   V+ +C      ++       
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM------- 197

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
                         +L+DMY K   I +AR +F+ + ERD+V+ T +I GYA+ G   E+
Sbjct: 198 --------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 243

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF K++ EG++ + V   +V+ A + L A+   + +  ++ R +    V+L  ++IDM
Sbjct: 244 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 303

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +R +FD M E+ VISW+AM+  Y  HG GR+ ++LF +M     + PD +T
Sbjct: 304 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKIT 362

Query: 365 YLAVLSGC 372
             ++L  C
Sbjct: 363 LASLLYAC 370



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 183/370 (49%), Gaps = 32/370 (8%)

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           +I+ C R    L+  L+  Y KC  + DAR +FD+M+ER++V+WT MI  Y++   + E+
Sbjct: 185 VIRAC-RDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 243

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           L LF +M      P++    TV+ +CA        + I   I +  F+  + +G++++DM
Sbjct: 244 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 303

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           YAK G +  AR +F+ + E++V+S +A+I+ Y   G   +A++LFR +   GM+ + +T 
Sbjct: 304 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITL 363

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           AS+L A      L   +QVH+      +   +++ N L+  YS   +L  +  +FD M  
Sbjct: 364 ASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV 423

Query: 324 RTVISWNAMLVGYSK-------HGMGREVVE---------------------LFNLMREE 355
           R  +SW+ M+ G++K        G  RE++                      LF+ MREE
Sbjct: 424 RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREE 483

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             V PD V  + V+  C+  G   +   +   I   +  F+ ++     ++DM  + G V
Sbjct: 484 G-VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ--RKKFQLDVILGTAMIDMHAKCGCV 540

Query: 416 GEALEFIKNM 425
             A E    M
Sbjct: 541 ESAREIFDRM 550


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/576 (39%), Positives = 350/576 (60%), Gaps = 3/576 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           Y T+L +CV  R +R G+++HA ++ +       L TRL+  Y  C  +S AR++FDEM 
Sbjct: 66  YATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMP 125

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELG 178
            + NV  W  +I AY++      A+ L+  ML   + EP+ FT+  VL +CA       G
Sbjct: 126 NQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAG 185

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H  ++++++ + ++V + L+DMYAK G + EA  VF+    RD V   ++I+   Q 
Sbjct: 186 REVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQN 245

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+ L R +  EG+    VT  S ++A +   AL  G+++H +  R    S   L+
Sbjct: 246 GRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLK 305

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL+DMY+K G +T +R +FD +  R +ISWNAM+ G+  HG      ELF  MR E +V
Sbjct: 306 TSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQV 365

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +T++ VLS C+HGGM      VF  +V      +P ++HY C+VD+LG +GR  EA
Sbjct: 366 MPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYS-IKPMVQHYTCLVDVLGHSGRFKEA 424

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + IK M  +P + I G+LL  C++H NV++ E    +L+E+EPE+AGNYV+LSN+YA +
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQS 484

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G+WE+  RVR+LM  + + K    SWIEL    H F   D SHP  +E+  ++++L    
Sbjct: 485 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLI 544

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            + GYVPD + V ++V++++K  ++ GHSE+LA+ FGLI TP G  + V KNLR+C DCH
Sbjct: 545 SQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCH 604

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              K +S++  R++ +RD NR+HH V G CSC D+W
Sbjct: 605 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 3/212 (1%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N   +AT+L SC  +     G+Q+H+ ++ S       + + L+D+YA  G +  AR +F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 218 ECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYVTYASVLTALSGLAA 275
           + +P + +V     +I  YA+ G  E AIEL+R++   G M  +  TY  VL A + L  
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           LG G++VH  V+R    + V +   LIDMY+KCG +  +  VFD+ + R  + WN+M+  
Sbjct: 182 LGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAA 241

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
             ++G   E + L   M  E  + P  VT ++
Sbjct: 242 CGQNGRPAEALALCRNMAAEG-IAPTIVTLVS 272



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N+  YA++L +     A+  G+Q+H+ +L   +    VL   L+D+Y+ CG ++ +RR+F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 319 DNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           D M ++  V  WN ++  Y++ G     +EL+  M     ++PD+ TY  VL  C+   +
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACA--AL 179

Query: 378 EDRGLAVFHEIVD--CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
            D G     E+ D   +  +  ++     ++DM  + G V EA     +      A +  
Sbjct: 180 LDLGAG--REVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVR-DAVVWN 236

Query: 436 SLLGAC 441
           S++ AC
Sbjct: 237 SMIAAC 242


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   ++ G +VH  ++K  +   +++ + L   Y+KC  LSDA K F+EM  +
Sbjct: 181 SVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK 240

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V WT+MI  + +     +AL  +++M+  D   ++    + L++C+       GK +H
Sbjct: 241 DAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLH 300

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLD 241
           + I+K  FE   ++G++L DMY+K+G +  A  VF+   +   +VS TAII GY ++   
Sbjct: 301 ATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQI 360

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E+A+  F  L+  G+  N  T+ S++ A +  A L HG Q+H  V++F       + ++L
Sbjct: 361 EKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTL 420

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY KCG   +S ++FD +     I+WN ++  +S+HG+GR  +E FN M     +KP+
Sbjct: 421 VDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRG-LKPN 479

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           +VT++ +L GCSH GM + GL  F  +     G  P+ EHY CV+D+LGRAG++ EA +F
Sbjct: 480 AVTFVNLLKGCSHAGMVEDGLNYFSSMEKIY-GVVPKEEHYSCVIDLLGRAGKLKEAEDF 538

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I NMPFEP      S LGAC++H +++  +F   +LM++EPEN+G +V+LSN+YA   +W
Sbjct: 539 INNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQW 598

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           EDV  +R+++K+  + K PG SW+++    H F   D SHP ++E+  K+  L  + K  
Sbjct: 599 EDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRI 658

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVP    VL D+D+  KEK+L  HSE++A+ F L+  P G PI V KNLR+C DCH+  
Sbjct: 659 GYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSAL 718

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SKV  R + +RD +RFHH   G+CSCGDYW
Sbjct: 719 KFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 209/423 (49%), Gaps = 8/423 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L+      + L  G+++HA +I+    P  +L    +  Y+KC  L    K+FD+M +RN
Sbjct: 81  LIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRN 140

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSWT++I+ ++  +   EAL+ F +M        +F  ++VL +C      + G Q+H 
Sbjct: 141 MVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHC 200

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L++K  F   ++VGS+L DMY+K G + +A   FE +P +D V  T++I G+ + G  ++
Sbjct: 201 LVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKK 260

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+  + K+  + +  +     S L+A S L A   GK +H+ +L+        + N+L D
Sbjct: 261 ALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTD 320

Query: 304 MYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           MYSK G +  +  VF   S+  +++S  A++ GY +     + +  F  +R    ++P+ 
Sbjct: 321 MYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRG-IEPNE 379

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+ +++  C++    + G  +  ++V      +P +     +VDM G+ G    +++  
Sbjct: 380 FTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLFDHSIQLF 437

Query: 423 KNMPFEPTAAILGSLLGACRVH--YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
             +   P      +L+G    H      I  F G     ++P NA  +V L    + AG 
Sbjct: 438 DEIE-NPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKP-NAVTFVNLLKGCSHAGM 495

Query: 481 WED 483
            ED
Sbjct: 496 VED 498



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 7/266 (2%)

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           SDT+    T A ++ + A       GKQ+H+++I+     + ++ +  L++Y+K G +  
Sbjct: 73  SDTK----TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDY 128

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
              +F+ + +R++VS T+II+G+A     +EA+  F ++++EG I+     +SVL A + 
Sbjct: 129 TIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTS 188

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L A+  G QVH  V++      + + ++L DMYSKCG L+ + + F+ M  +  + W +M
Sbjct: 189 LGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSM 248

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + G+ K+G  ++ +  +  M  ++ V  D     + LS CS       G ++   I+  K
Sbjct: 249 IDGFVKNGDFKKALTAYMKMVTDD-VFIDQHVLCSTLSACSALKASSFGKSLHATIL--K 305

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEA 418
            GFE E      + DM  ++G +  A
Sbjct: 306 LGFEYETFIGNALTDMYSKSGDMVSA 331



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           +S+  T A ++   +    L  GKQ+H+ ++R        L N  +++YSKCG L Y+ +
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD MS+R ++SW +++ G++ +   +E +  F  MR E ++        +VL  C+  G
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIAT-QFALSSVLQACTSLG 190

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
               G  V   +V C  GF  E+     + DM  + G + +A +  + MP
Sbjct: 191 AIQFGTQVHCLVVKC--GFGCELFVGSNLTDMYSKCGELSDACKAFEEMP 238



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 41  QLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           Q+ KAL   +++   G+E     + +L+ AC NQ  L  G ++H  ++K  ++   ++ +
Sbjct: 359 QIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSS 418

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC     + ++FDE+   + ++W  ++  +SQ      A+  F  M+    +P
Sbjct: 419 TLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKP 478

Query: 158 NEFTFATVLTSCAGAFGFELG-------KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           N  TF  +L  C+ A   E G       ++I+ ++ K   E H    S ++D+  +AG++
Sbjct: 479 NAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPK---EEHY---SCVIDLLGRAGKL 532

Query: 211 HEARGVFECLP 221
            EA      +P
Sbjct: 533 KEAEDFINNMP 543


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 368/589 (62%), Gaps = 10/589 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+++    + T L  C  QR L   +++H  ++K  Y     +RT L+V Y+KC  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 109 LSDARKMFDEM-RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           + +A K+F       NVV+WTAMI  + Q  ++ +A++LF +M R    PN FT++TVL 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
               +    L  Q+H+ IIK+ +E    V ++LLD Y K G + E+  VF  +P +D+V+
Sbjct: 417 GKPSS----LLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA 472

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHV 286
            +A+++G AQ    E+A+E+F +L  EG+  N  T++SV+ A S  AA + HGKQ+H+  
Sbjct: 473 WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATA 532

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++    + + + ++L+ MYSK G++  + +VF    ER ++SWN+M+ GY +HG  ++ +
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKAL 592

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCV 405
           E+F +M+ +  +  D VT++ VL+ C+H G+ + G   F+ ++  KD   + + EHY C+
Sbjct: 593 EVFQIMQNQG-LPLDDVTFIGVLTACTHAGLVEEGEKYFNIMI--KDYHIDKKXEHYSCM 649

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+  RAG   +A++ I  MPF  +  I  +LL ACRVH N+++G+   ++L+ ++P +A
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YV+LSN++A AG WE+   VR+LM E+ V K+ G SWIE+   + +F A D SHP  +
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
            + AK+++LS+K K+ GY PD + V +DV+EE KE +L  HSE+LA+ +GLI  P GAPI
Sbjct: 770 LVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPI 829

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ KNLRIC DCHN  + +S +  R + +RD NRFHH   G CSCG YW
Sbjct: 830 QIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 165/296 (55%), Gaps = 2/296 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G++VH   +K+ +   V + T L+  Y K E   D R +FDEM  +NVVSWT+++S Y++
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              + E ++L  +M      PN FTFATVL + A     E G Q+H++I+K+ FE   +V
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++L+ MY K+  + +A  VF+ +  RD V+   +I GYA +G   E  ++F ++++ G+
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +   + + L   S    L   KQ+H  V++        ++ +L+  YSKC S+  + +
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFK 362

Query: 317 VFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           +F    +   V++W AM+ G+ ++   ++ V+LF  M  E  V+P+  TY  VL+G
Sbjct: 363 LFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG-VRPNHFTYSTVLAG 417



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 175/337 (51%), Gaps = 8/337 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N ++   + +M   G+      + T+L A  ++  + GG +VHA ++K  +    ++   
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNA 245

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K E + DA  +FD M  R+ V+W  MI  Y+      E   +F RM  +  + +
Sbjct: 246 LICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLS 305

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
              F T L  C+        KQ+H  ++K+ +E    + ++L+  Y+K   + EA  +F 
Sbjct: 306 RTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS 365

Query: 219 CL-PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL-SGLAAL 276
                 +VV+ TA+I G+ Q   +++A++LF ++  EG+  N+ TY++VL    S L + 
Sbjct: 366 MADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS- 424

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
               Q+H+ +++        +  +L+D Y K G++  S RVF ++  + +++W+AML G 
Sbjct: 425 ----QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL 480

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++     + +E+F  + +E  VKP+  T+ +V++ CS
Sbjct: 481 AQTRDSEKAMEVFIQLVKEG-VKPNEYTFSSVINACS 516



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 159/294 (54%), Gaps = 5/294 (1%)

Query: 83  HMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
           H IK    P  +L  + + F +       A ++FDE   +++  +  ++  +S+  H  E
Sbjct: 28  HHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           AL+LF  +  S    +  T +  L  C   F   +G+Q+H   +KS F   + VG+SL+D
Sbjct: 88  ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY K     + RG+F+ +  ++VVS T+++SGYA+ GL++E I L  ++Q+EG+  N  T
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 263 YASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +A+VL AL+  + +  G QVH+ +++  FE  ++V   N+LI MY K   +  +  VFD+
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC--NALICMYLKSEMVGDAEAVFDS 265

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           M  R  ++WN M+ GY+  G   E  ++F+ MR    VK     +   L  CS 
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAG-VKLSRTVFCTALKLCSQ 318


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/625 (38%), Positives = 376/625 (60%), Gaps = 37/625 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  +L +C   +  + GQ++H H++K      +Y+ T LI  Y
Sbjct: 120 KLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMY 179

Query: 104 NKCECLSDA-------------------------------RKMFDEMRERNVVSWTAMIS 132
            +   L DA                               +K+FDE+  ++VVSW AMIS
Sbjct: 180 VQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMIS 239

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++  +  EAL LF  M++++  P+E T  TV+++CA +   ELG+Q+H  I    F S
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS 299

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G +  A G+FE LP +DV+S   +I GY  + L +EA+ LF+++ 
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG 
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 419

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF+++  +++ SWNAM+ G++ HG      +LF+ MR+   ++PD +T++ +LS
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLS 478

Query: 371 GCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH GM D G  +F  +  D K    P++EHYGC++D+LG +G   EA E I  M  EP
Sbjct: 479 ACSHSGMLDLGRHIFRTMTQDYK--MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEP 536

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC++H NV++GE   + L++IEPEN G+YV+LSN+YASAGRW +V + R 
Sbjct: 537 DGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRA 596

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+ +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  ++AG+VPD S 
Sbjct: 597 LLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSE 656

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +SK+Y 
Sbjct: 657 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 716

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++  RD+ RFHH  +G CSC DYW
Sbjct: 717 REIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 213/439 (48%), Gaps = 43/439 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECLSDARKMFDEM 119
           +LL+ C   +TL+  + +HA MIK       Y  ++LI F       E L  A  +F  +
Sbjct: 38  SLLHNC---KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 94

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +E N++ W  M   ++  +    AL L++ M+     PN +TF  VL SCA +  F+ G+
Sbjct: 95  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIH  ++K   +  +YV +SL+ MY + GR+ +A  VF+  P RDVVS TA+I GYA  G
Sbjct: 155 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214

Query: 240 LDEEAIELFRKLQVE------GMISNYV-------------------------TYASVLT 268
             E A +LF ++ V+       MIS Y                          T  +V++
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 274

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +   ++  G+QVH  +      S + + N+LID+YSKCG L  +  +F+ +  + VIS
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN ++ GY+   + +E + LF  M    +  P+ VT L++L  C+H G  D G  + H  
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGRWI-HVY 392

Query: 389 VDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +D +  G          ++DM  + G + EA   + N     + +   +++    +H   
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 448 D--IGEFVGQRLMEIEPEN 464
           D     F   R + I+P++
Sbjct: 452 DASFDLFSRMRKIGIQPDD 470


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 353/574 (61%), Gaps = 15/574 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L  C        G+++H  ++KT ++  VY+ + LI  Y K   L  A K+F  ++
Sbjct: 441 YPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK 500

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E +VVSWTAMI+ Y+Q     EALNLF  M     + +   FA+ +++CAG    + G+Q
Sbjct: 501 ENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ 560

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+    S +   + +G++L+ +YA+ G++ EA   F+ +  +D VS  +++SG+AQ G 
Sbjct: 561 IHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGY 620

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ +F ++   G+  N  T+ S ++A + +A +  GKQ+H  + +    S   + N+
Sbjct: 621 FEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNA 680

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI +Y+KCG++       D+      ISWN+M+ GYS+HG G E ++LF  M++ + V P
Sbjct: 681 LITLYAKCGTI-------DD------ISWNSMITGYSQHGCGFEALKLFEDMKQLD-VLP 726

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT++ VLS CSH G+ D G++ F  + +  +   P+ EHY CVVD+LGR+G +  A  
Sbjct: 727 NHVTFVGVLSACSHVGLVDEGISYFRSMSEAHN-LVPKPEHYACVVDLLGRSGLLSRAKR 785

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           F++ MP +P A +  +LL AC VH N+DIGEF    L+E+EP+++  YV++SN+YA +G+
Sbjct: 786 FVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGK 845

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+   R R++MK++ V K+PGRSW+E+D  +H F A D++HP  + +   ++ L  +  E
Sbjct: 846 WDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAE 905

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVP  + +L D +  QK+   + HSE+LA+ FGL+      P+ V KNLR+C DCHN+
Sbjct: 906 NGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNW 965

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K VSK+  R + +RD  RFHH   G+CSC DYW
Sbjct: 966 IKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 199/387 (51%), Gaps = 33/387 (8%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACV-NQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           G++      M T  +E     +  +L  C  N  + R  +++HA  I + +    ++   
Sbjct: 145 GRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNP 204

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   LS A+K+F+ ++ R+ VSW AMIS  SQ  +  EA+ LF ++        
Sbjct: 205 LIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-------- 256

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
                 VL++C     FE GKQ+H L++K  F S  YV ++L+ +Y+++G +  A  +F 
Sbjct: 257 ------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFH 310

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
           C+ +RD VS  ++ISG AQ G    A+ LF+K+ ++    + VT AS+L+A + + AL +
Sbjct: 311 CMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPN 370

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ HS+ ++  + S +V++ SL+D+Y KC  +  +   F               + Y +
Sbjct: 371 GKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQ 415

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                +  ++F  M+ E  V P+  TY ++L  C+  G  D G  +  +++  K GF+  
Sbjct: 416 LDNLNKSFQIFTQMQIEGIV-PNQFTYPSILKTCTTLGATDLGEQIHTQVL--KTGFQFN 472

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +     ++DM  + G++  AL+  + +
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRL 499



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 202/388 (52%), Gaps = 21/388 (5%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDT---LLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L   G + +AL     + L+ +  +  T   LL+AC +   L  G++ H++ IK   
Sbjct: 324 ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGM 383

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              + +   L+  Y KC  +  A + F                 Y Q  +  ++  +F +
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQ 428

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M      PN+FT+ ++L +C      +LG+QIH+ ++K+ F+ ++YV S L+DMYAK G+
Sbjct: 429 MQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGK 488

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  +F  L E DVVS TA+I+GY Q     EA+ LF+++Q +G+ S+ + +AS ++A
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +G+ AL  G+Q+H+          + + N+L+ +Y++CG +  +   FD +  +  +SW
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ G+++ G   E + +F  M +   ++ +S T+ + +S  ++      G  + H ++
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAG-LEINSFTFGSAVSAAANIANVRIGKQI-HGMI 666

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
             K G++ E E    ++ +  + G + +
Sbjct: 667 R-KTGYDSETEVSNALITLYAKCGTIDD 693



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 219/480 (45%), Gaps = 62/480 (12%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+    + +  LL  C+N R+   G                    +LI FY     
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDG-------------------LKLIDFYLAFGD 112

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ A  +FDEM  R++  W  + + +  +        LF RML  + E +E  FA VL  
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 169 CAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C+G A  F   +QIH+  I S FES  ++ + L+D+Y K G +  A+ VFE L  RD VS
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS 232

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISG +Q G +EEA+ LF ++              VL+A + +     GKQ+H  VL
Sbjct: 233 WVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVL 278

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S   + N+L+ +YS+ G+L+ + ++F  MS+R  +S+N+++ G ++ G     + 
Sbjct: 279 KQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALA 338

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M  + + KPD VT  ++LS C+  G    G   FH     K G   +I   G ++D
Sbjct: 339 LFKKMNLDCQ-KPDCVTVASLLSACASVGALPNG-KQFHSYA-IKAGMTSDIVVEGSLLD 395

Query: 408 MLGRAGRVGEALEFI--------KNMPFE-----------PTAAILGSLLGACRVHYNVD 448
           +  +   +  A EF          N  F+           P      S+L  C      D
Sbjct: 396 LYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 449 IGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           +GE +  ++++   + N     +L ++YA  G+ +   ++   +KE  V      SW  +
Sbjct: 456 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVV-----SWTAM 510


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 340/530 (64%), Gaps = 2/530 (0%)

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
           +C+ +++AR +F+ + ER+ ++WT M++  +Q     EAL++F RM       +++TF +
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGS 282

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +LT+C      E GKQIH+ I ++ +E +++VGS+L+DMY+K   +  A  VF  +  ++
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN 342

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           ++S TA+I GY Q G  EEA+ +F ++Q +G+  +  T  SV+++ + LA+L  G Q H 
Sbjct: 343 IISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHC 402

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
             L   +  YV + N+L+ +Y KCGS+  + R+FD MS    +SW A+++GY++ G  +E
Sbjct: 403 LALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKE 462

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            ++LF  M  +  VKPD VT++ VLS CS  G+ D+G + FH +    D   P  +HY C
Sbjct: 463 TIDLFEKMLSKG-VKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHD-IVPLDDHYTC 520

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           ++D+  R+G + +A EFIK MP  P A    +LL ACR+  +++IG++  + L++++P+N
Sbjct: 521 MIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQN 580

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
             +YV+L +++AS G W DV ++R  M+++ V K+PG SWI+    +H F A D+SHP  
Sbjct: 581 PASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFS 640

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
             +  K++ L+ K  E GY PD+S VL+DV + +K  +L  HSEKLA+ FGLI  P   P
Sbjct: 641 RTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMP 700

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IR++KNLR+CVDCHN  KF+SK+ GR + +RD  RFH    G CSCGD+W
Sbjct: 701 IRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 208/425 (48%), Gaps = 68/425 (16%)

Query: 80  VHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ-- 136
           VHA +++T   P P YL   L+  Y     L  AR++FD M  RN+V+  +++SA ++  
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 137 ---------------KAHSFEAL--------------NLFIRMLRSDT--EPNEFTFATV 165
                           A S+ AL                ++ +LR +    P+  T + V
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI--------------- 210
           +   +      LG+Q+H  I++  F ++ + GS L+DMYAK G I               
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 211 ----------------HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
                            EAR +FE + ERD ++ T +++G  Q GL+ EA+++FR+++ E
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  +  T+ S+LTA   LAAL  GKQ+H+++ R      V + ++L+DMYSKC S+  +
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLA 331

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
             VF  M  + +ISW AM+VGY ++G G E V +F+ M+ +  +KPD  T  +V+S C++
Sbjct: 332 EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG-IKPDDFTLGSVISSCAN 390

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
               + G A FH +     G  P +     +V + G+ G + +A      M F    +  
Sbjct: 391 LASLEEG-AQFHCLA-LVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 448

Query: 435 GSLLG 439
             ++G
Sbjct: 449 ALVMG 453



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 152/290 (52%), Gaps = 4/290 (1%)

Query: 36  LCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           L  NG  ++AL     M   G+ +    + ++L AC     L  G+++HA++ +TCY   
Sbjct: 252 LTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDN 311

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++ + L+  Y+KC  +  A  +F  M  +N++SWTAMI  Y Q     EA+ +F  M R
Sbjct: 312 VFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQR 371

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +P++FT  +V++SCA     E G Q H L + S    ++ V ++L+ +Y K G I +
Sbjct: 372 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIED 431

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F+ +   D VS TA++ GYAQ G  +E I+LF K+  +G+  + VT+  VL+A S 
Sbjct: 432 AHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSR 491

Query: 273 LAALGHGKQ-VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
              +  G+   HS     +I         +ID+YS+ G L  +      M
Sbjct: 492 SGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQM 541



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 47/360 (13%)

Query: 177 LGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           L   +H+LI+++    S  Y+ ++LL  YA +G +  AR VF+ +P R++V+  +++S  
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSAL 87

Query: 236 AQLGLDEEAIELFRKLQVEGMIS---------------------------------NYVT 262
           A+ GL  +   LF  L     +S                                 + +T
Sbjct: 88  ARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRIT 147

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
            + V+   S L     G+QVH  +LR    +Y    + L+DMY+K G +  +RRVFD M 
Sbjct: 148 MSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEME 207

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + V+  N M+ G  +  M  E   LF  + E      DS+T+  +++G +  G+E   L
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEER-----DSITWTTMVTGLTQNGLESEAL 262

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE---FIKNMPFEPTAAILGSLLG 439
            VF  +    +G   +   +G ++   G    + E  +   +I    +E    +  +L+ 
Sbjct: 263 DVFRRMR--AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
                 +V + E V +R+M    +N  ++  +   Y   G  E+  RV   M+   +  D
Sbjct: 321 MYSKCRSVRLAEAVFRRMMW---KNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPD 377


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 357/558 (63%), Gaps = 2/558 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H   +KT Y    ++   L+  Y KC  + DA  +F+ +   +V+ W+ +IS Y+Q
Sbjct: 268 GKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQ 327

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              + +A  +F+RM+RS   PNEF+ + VL +CA     ELG+QIH+L IK  +ES ++V
Sbjct: 328 SCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFV 387

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++L+DMYAK   +  +  +F  L + + VS   II GY Q G  E+A+ +F +++   M
Sbjct: 388 GNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHM 447

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           +S  VT++SVL A +  +++ H  Q+HS + +    +  ++ NSLID Y+KCG +  + +
Sbjct: 448 LSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALK 507

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF+++ E  V+SWN+++  Y+ HG     +ELF+ M + + +K + VT++++LS C   G
Sbjct: 508 VFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSD-IKANDVTFVSLLSVCGSTG 566

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + ++GL +F+ ++      +P +EHY C+V +LGRAGR+ +AL+FI ++P  P+  +  +
Sbjct: 567 LVNQGLWLFNSMM-MDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRA 625

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +C VH NV +G +  +++++IEP +   YV+LSN+YA+AG  ++V   R+ M+   V
Sbjct: 626 LLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGV 685

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K+ G SW+E+   +H F      HP    ++A ++ L++K    GYVPD++ VL+DVDE
Sbjct: 686 KKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDE 745

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E+K ++L  HSE+LAL +GL  TP G PIR++KNLR C+DCH   K +SK+  R++ +RD
Sbjct: 746 EEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRD 805

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFHH  EG CSCGDYW
Sbjct: 806 INRFHHFEEGICSCGDYW 823



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 207/432 (47%), Gaps = 11/432 (2%)

Query: 23  VPSFPP-NPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDT--LLNACVNQRTLRGGQR 79
           +P+F   N    + L +N  L     E+A+L L  + + Y     L  C+ +   R G+ 
Sbjct: 8   LPTFSQINGLLSRNLAANEALQWLDDELASLALP-KLDSYACARFLQRCIARGDARAGRA 66

Query: 80  VHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           VHA +++     +   +    L+ FY K   L+ AR++FD M ERN VS+  ++  Y+ +
Sbjct: 67  VHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALR 126

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               EAL LF R+ R   E N F   T+L          L   IH+   K   + + +VG
Sbjct: 127 GEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVG 186

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++L+D Y+  G +  AR VF+ +  +D V+ TA++S Y++  + E A+  F K+++ G  
Sbjct: 187 TALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFK 246

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N     S L A   L++   GK +H   ++    +   +  +L+DMY+KCG +  +  +
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGG 376
           F+ +    VI W+ ++  Y++     +  E+F  +MR  + V P+  +   VL  C++  
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMR--SFVVPNEFSLSGVLQACANIA 364

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
             + G  + +  +  K G+E E+     ++DM  +   +  +LE   ++      +    
Sbjct: 365 FLELGEQIHNLAI--KLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 437 LLGACRVHYNVD 448
           ++G C+  +  D
Sbjct: 423 IVGYCQSGFAED 434



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 147/289 (50%), Gaps = 5/289 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC N   L  G+++H   IK  Y   +++   L+  Y KC  + ++ ++F  +++ N
Sbjct: 356 VLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDAN 415

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW  +I  Y Q   + +AL++F  M  +     + TF++VL +CA     +   QIHS
Sbjct: 416 EVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHS 475

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           LI KS F +   V +SL+D YAK G I +A  VFE + E DVVS  +IIS YA  G    
Sbjct: 476 LIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATN 535

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLI 302
           A+ELF ++    + +N VT+ S+L+       +  G  + +S ++   I   +     ++
Sbjct: 536 ALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIV 595

Query: 303 DMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKH---GMGREVVE 347
            +  + G LT + +   ++ S  + + W A+L     H    +GR   E
Sbjct: 596 RLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAE 644


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 342/551 (62%), Gaps = 3/551 (0%)

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           MI   +    Y+R R+++ + KC  + DAR++FDEM ERN+VSW  +IS         EA
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
             LF+ M    ++   FTFA ++ + AG     +G+Q+H+  +K      I+V  +L+DM
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y+K G I +AR VFE +PE+  V    II+GYA  G  EEA++++ +++  G+  ++ T+
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           + ++   + LA++ H KQ H+ ++R    S +V   +L+D YSK G +  +R VFD M+ 
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMAS 240

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + VISWNA++ GY  HG G E VELF  M +E ++ P+ +T+LAVLS CSH G+ +RG  
Sbjct: 241 KNVISWNALIGGYGNHGRGSEAVELFEQMIQE-RMNPNHITFLAVLSACSHSGLSERGWE 299

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           +F  +    +  +P   HY C+++++GR G + EAL  I+  PF+PTA +  +LL ACRV
Sbjct: 300 IFQSM-GRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRV 358

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           + N ++G+F  ++L  +EP+   NY++L N+Y SAG  ++   V   +K K +   P  S
Sbjct: 359 NENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCS 418

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           WIE+ +  H F + D  HP R+E+  KV +L ++  + GYVP+   +L DVD EQ+E+V 
Sbjct: 419 WIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVD-EQEERVR 477

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
           L HSEKLA+ FGLI TP  AP+++++  RIC DCH   K +++V GR++ +RD  RFHH 
Sbjct: 478 LYHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHF 537

Query: 624 VEGTCSCGDYW 634
             G CSC DYW
Sbjct: 538 KHGHCSCEDYW 548



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 2/219 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++ A      +  G+++HA  +K      +++   LI  Y+KC  + DAR +F+EM 
Sbjct: 79  FAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMP 138

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E+  V W  +I+ Y+   +S EAL+++  M  S  + + FTF+ ++  CA     E  KQ
Sbjct: 139 EKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQ 198

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H+ +I+  F S I   ++L+D Y+K GRI +AR VF+ +  ++V+S  A+I GY   G 
Sbjct: 199 AHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGR 258

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTAL--SGLAALG 277
             EA+ELF ++  E M  N++T+ +VL+A   SGL+  G
Sbjct: 259 GSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERG 297



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 10/233 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++M    +  ++  C    ++   ++ HA +I+  +   +   T L+ FY+K  
Sbjct: 167 EMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWG 226

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DAR +FD+M  +NV+SW A+I  Y       EA+ LF +M++    PN  TF  VL+
Sbjct: 227 RIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLS 286

Query: 168 SCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +C+ +   E G +I   + + N  +      + ++++  + G + EA  +    P +   
Sbjct: 287 ACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTA 346

Query: 227 SCTAIISGYAQLGLDEEAIEL--FRKLQVEGM----ISNYVTYASVLTALSGL 273
           +  A +    ++    E  EL  F   ++ GM    ++NY+   ++  +   L
Sbjct: 347 NMWAALLTACRV---NENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNL 396


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 360/589 (61%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M + GL        ++L AC        G+++H  M+K       Y+   L+  Y K
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAK 350

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L DA+K+FD + +R++V W A+IS  S  A   EAL+LF RM +   + N  T A V
Sbjct: 351 HGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAV 410

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A        +Q+H+L  K  F S  +V + L+D Y K   ++ A  VFE     D+
Sbjct: 411 LKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDI 470

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++ T++I+  +Q    E+AI+LF ++  +G+  +    +S+L A + L+A   GKQVH+H
Sbjct: 471 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++ +  S V   N+L+  Y+KCGS+  +   F  + E+ V+SW+AM+ G ++HG G+  
Sbjct: 531 LIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRA 590

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +++F+ M +E+ + P+ +T  +VL  C+H G+ D     F+ + +   G E   EHY C+
Sbjct: 591 LDVFHRMVDEH-ISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF-GIERTEEHYACM 648

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++ +A+E + +MPF+  AA+ G+LL A RVH + ++G    ++L  +EPE +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKS 708

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N YASAG W+DV +VR+LMK+  V K+P  SW+EL   +HTF   D+SHP   
Sbjct: 709 GTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRAR 768

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           ++ AK+ +L     +AGYVP++   L+DVD+ +KE +L  HSE+LA+ F LI TP GAPI
Sbjct: 769 DIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPI 828

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+S +  R++ +RD NRFHH  +G CSC DYW
Sbjct: 829 RVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 236/464 (50%), Gaps = 19/464 (4%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS+    K   EM   G++     +  ++NAC   R L  G++VHA +I+T Y   V+  
Sbjct: 183 CSHA--VKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y+K   +  A  +F ++ E +VVSW A IS      H   AL L ++M  S   
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN FT +++L +CAG+  F LG+QIH  ++K+N +S  Y+   L+DMYAK G + +A+ V
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKV 360

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +P+RD+V   A+ISG +      EA+ LF +++ EG   N  T A+VL + + L A+
Sbjct: 361 FDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAI 420

Query: 277 GHGKQVH--SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
              +QVH  +  L F   S+VV  N LID Y KC  L Y+ RVF+      +I++ +M+ 
Sbjct: 421 SDTRQVHALAEKLGFLSDSHVV--NGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMIT 478

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
             S+   G + ++LF  M  +  + PD     ++L+ C+     ++G  V   ++  K  
Sbjct: 479 ALSQCDHGEDAIKLFMEMLRKG-LDPDPFVLSSLLNACASLSAYEQGKQVHAHLI--KRQ 535

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
           F  ++     +V    + G + +A      +P E       +++G    H +      V 
Sbjct: 536 FMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKRALDVF 594

Query: 455 QRLME--IEPENAGNYVILSNLYAS---AGRWEDVTRVRELMKE 493
            R+++  I P    N++ ++++  +   AG  ++  R    MKE
Sbjct: 595 HRMVDEHISP----NHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 230/490 (46%), Gaps = 48/490 (9%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERNVVSWTAMISAYS 135
           G ++HA  + T     +++   L+  Y     + +AR +FDE   ERN VSW  ++SAY 
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +      A+ +F  M+    +PNEF F+ V+ +C G+   E G+++H+++I++ ++  ++
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             ++L+DMY+K G I  A  VF  +PE DVVS  A ISG    G D+ A+EL  +++  G
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           ++ N  T +S+L A +G  A   G+Q+H  +++    S   +   L+DMY+K G L  ++
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAK 358

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-- 373
           +VFD + +R ++ WNA++ G S      E + LF  MR+E     +  T  AVL   +  
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG-FDVNRTTLAAVLKSTASL 417

Query: 374 ---------HGGMEDRGLAVFHEIV----------DCKDGFEPEIEHYG--------CVV 406
                    H   E  G      +V          DC +      E +G         ++
Sbjct: 418 EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMI 477

Query: 407 DMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---I 460
             L +     +A++    M     +P   +L SLL AC      + G+ V   L++   +
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE----LDQILHTFHA 516
               AGN ++ +  YA  G  ED       + EK V      SW      L Q  H   A
Sbjct: 538 SDVFAGNALVYT--YAKCGSIEDADLAFSGLPEKGVV-----SWSAMIGGLAQHGHGKRA 590

Query: 517 SDRSHPMREE 526
            D  H M +E
Sbjct: 591 LDVFHRMVDE 600



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 190/385 (49%), Gaps = 10/385 (2%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
            E    LL      ++L  G  +HAH++K+        R  L+ FY+KC     AR++FD
Sbjct: 4   LETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFD 61

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           E+ +   VSW+++++AYS  A   +AL  F  M       NEF    VL  CA   GF  
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVL-KCAPDAGF-- 118

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYA 236
           G Q+H+L + +     I+V ++L+ MY   G + EAR VF E   ER+ VS   ++S Y 
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +      A+++F ++   G+  N   ++ V+ A +G   L  G++VH+ V+R      V 
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             N+L+DMYSK G +  +  VF  + E  V+SWNA + G   HG  +  +EL   M+   
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V P+  T  ++L  C+  G  + G  +   +V      +  I  +G +VDM  + G + 
Sbjct: 299 LV-PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIA-FG-LVDMYAKHGLLD 355

Query: 417 EALEFIKNMPFEPTAAILGSLLGAC 441
           +A +    +P +    +  +L+  C
Sbjct: 356 DAKKVFDWIP-QRDLVLWNALISGC 379


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 345/558 (61%), Gaps = 9/558 (1%)

Query: 84  MIKTCYRPPVYLRTRLIVFYN-------KCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           +I+   R    +  + +V YN       +C+ + DA+ +F  M +R+ ++WT M++  +Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL++F RM       +++TF ++LT+C      E GKQIH+ I ++ +E +++V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           GS+L+DMY+K   I  A  VF  +  R+++S TA+I GY Q    EEA+  F ++Q++G+
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T  SV+++ + LA+L  G Q H   L   +  Y+ + N+L+ +Y KCGS+  + R
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD MS    +SW A++ GY++ G  +E ++LF  M   N +KPD VT++ VLS CS  G
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLV-NGLKPDGVTFIGVLSACSRAG 494

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + ++G   F  +    D   P  +HY C++D+  R+GR  EA EFIK MP  P A    +
Sbjct: 495 LVEKGCDYFDSMQKDHD-IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +CR+  N++IG++  + L+E +P+N  +YV+L +++A+ G+W +V  +R  M+++ V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K+PG SWI+    +H F A D+SHP    +  K++ L+ K  E GY PD+S VL+DV +
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
             K  ++  HSEKLA+ FGLI  P+  PIR++KNLR+CVDCHN  KF+SK+ GR + +RD
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 733

Query: 617 KNRFHHIVEGTCSCGDYW 634
             RFH   +GTCSCGD+W
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 201/418 (48%), Gaps = 67/418 (16%)

Query: 74  LRGGQRVHAHMIKTCYR-PPVYLRTRLIVFYNKCECLSDARKMFDEMR------------ 120
           +R    VH  ++KT  + PP +L   L+  Y K   L+ AR++FDEM             
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 121 -------------------ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEF 160
                              ER+ VS+ A+I+ +S       ++ L+  +LR ++  P   
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR------ 214
           T + ++   +      LG  +H  +++  F ++ +VGS L+DMYAK G I +AR      
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 215 -------------------------GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
                                    G+F+ + +RD ++ T +++G  Q GL  EA+++FR
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++ EG+  +  T+ S+LTA   LAA   GKQ+H+++ R      V + ++L+DMYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  +  VF  M+ R +ISW AM+VGY ++    E V  F+ M+ +  +KPD  T  +V+
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG-IKPDDFTLGSVI 386

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           S C++    + G A FH +     G    I     +V + G+ G + +A      M F
Sbjct: 387 SSCANLASLEEG-AQFHCLA-LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 2/275 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC        G+++HA++ +T Y   V++ + L+  Y+KC  +  A  +F  M 
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN++SWTAMI  Y Q A S EA+  F  M     +P++FT  +V++SCA     E G Q
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H L + S    +I V ++L+ +Y K G I +A  +F+ +   D VS TA+++GYAQ G 
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQN 299
            +E I+LF K+ V G+  + VT+  VL+A S    +  G      + +  +I        
Sbjct: 461 AKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYT 520

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAML 333
            +ID+YS+ G    +      M        W  +L
Sbjct: 521 CMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 41/263 (15%)

Query: 162 FATVLTSCAGA---FGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVF 217
           +A +L+S AG     G  +   +H LI+K+  ++   ++ + LL  YAK+GR+  AR VF
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 218 E-------------------------------CLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +                                +PERD VS  A+I+G++  G    +++
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQ 131

Query: 247 LFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           L+R L + E +    +T ++++   S L+    G  VH  VLR    +Y  + + L+DMY
Sbjct: 132 LYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMY 191

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           +K G +  +RRVF  M  +TV+ +N ++ G  +  M  +   LF LM     V  DS+T+
Sbjct: 192 AKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM-----VDRDSITW 246

Query: 366 LAVLSGCSHGGMEDRGLAVFHEI 388
             +++G +  G++   L VF  +
Sbjct: 247 TTMVTGLTQNGLQLEALDVFRRM 269



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 39/199 (19%)

Query: 263 YASVLTALSG---LAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           YA++L++ +G      +     VH  +L+   + P   +L N L+  Y+K G L  +RRV
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLL-NHLLTAYAKSGRLARARRV 70

Query: 318 FD-------------------------------NMSERTVISWNAMLVGYSKHGMGREVV 346
           FD                               +M ER  +S+NA++ G+S  G     V
Sbjct: 71  FDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSV 130

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +L+  +  E  V+P  +T  A++   S   + DR L         + GF         +V
Sbjct: 131 QLYRALLREESVRPTRITLSAMIMVAS--ALSDRALGHSVHCQVLRLGFGAYAFVGSPLV 188

Query: 407 DMLGRAGRVGEALEFIKNM 425
           DM  + G + +A    + M
Sbjct: 189 DMYAKMGLIRDARRVFQEM 207


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 363/602 (60%), Gaps = 8/602 (1%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   K L   ++M   G+E+      ++   C + R +  G+ VH+  +K C+     
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A+ +F EM +R+VVS+T+MI+ Y+++  + EA+ LF  M    
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+ +T   VL  CA     + GK++H  I +++    I+V ++L+DMYAK G + EA 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGL 273
            VF  +  +D++S   II GY++     EA+ LF  L  E   S +  T A VL A + L
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +A   G+++H +++R    S   + NSL+DMY+KCG+L  +  +FD+++ + ++SW  M+
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCK 392
            GY  HG G+E + LFN MR+   ++ D ++++++L  CSH G+ D G   F+ +  +CK
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAG-IEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHY C+VDML R G + +A  FI+NMP  P A I G+LL  CR+H++V + E 
Sbjct: 632 --IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 689

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           V +++ E+EPEN G YV+++N+YA A +WE V R+R+ + ++ + K+PG SWIE+   ++
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D S+P  E + A ++++  +  E GY P     L D +E +KE+ L GHSEKLA+
Sbjct: 750 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
             G+I +  G  IRV KNLR+C DCH  AKF+SK+  R++ LRD NRFH   +G CSC  
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 633 YW 634
           +W
Sbjct: 870 FW 871



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 216/385 (56%), Gaps = 7/385 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + G+EM    +  +  +  + R++ GG+++H  ++K+ +     +   L+ FY K +
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ 244

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  ARK+FDEM ER+V+SW ++I+ Y     + + L++F++ML S  E +  T  +V  
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CA +    LG+ +HS+ +K+ F       ++LLDMY+K G +  A+ VF  + +R VVS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+GYA+ GL  EA++LF +++ EG+  +  T  +VL   +    L  GK+VH  + 
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
             ++   + + N+L+DMY+KCGS+  +  VF  M  + +ISWN ++ GYSK+    E + 
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LFNL+ EE +  PD  T   VL  C+     D+G  +   I+  ++G+  +      +VD
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM--RNGYFSDRHVANSLVD 542

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAA 432
           M  + G +      + +M F+  A+
Sbjct: 543 MYAKCGAL-----LLAHMLFDDIAS 562



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 204/392 (52%), Gaps = 5/392 (1%)

Query: 28  PNPQNLKTLCSNGQLTKALIEMATLG-LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86
            N Q L+  C +G L  A+  +   G  ++      ++L  C + ++L+ G+ V   +  
Sbjct: 64  ANTQ-LRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122

Query: 87  TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNL 146
             +     L ++L + Y  C  L +A ++FDE++    + W  +++  ++      ++ L
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F +M+ S  E + +TF+ V  S +       G+Q+H  I+KS F     VG+SL+  Y K
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLK 242

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
             R+  AR VF+ + ERDV+S  +II+GY   GL E+ + +F ++ V G+  +  T  SV
Sbjct: 243 NQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSV 302

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
               +    +  G+ VHS  ++          N+L+DMYSKCG L  ++ VF  MS+R+V
Sbjct: 303 FAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSV 362

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           +S+ +M+ GY++ G+  E V+LF  M EE  + PD  T  AVL+ C+   + D G  V  
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEG-ISPDVYTVTAVLNCCARYRLLDEGKRVHE 421

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            I +   GF+  + +   ++DM  + G + EA
Sbjct: 422 WIKENDLGFDIFVSN--ALMDMYAKCGSMQEA 451


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 346/582 (59%), Gaps = 20/582 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC        G  +H++ IK      +++  +LI  Y +   L D +K+FD M  R
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR 311

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF---ATVLT------SCAGAF 173
           +++SW ++I AY        A++LF  M  S  +P+  T    A++L+      +C    
Sbjct: 312 DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQ 371

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
           GF L K          F   I +G++++ MYAK G +  AR VF  LP  DV+S   IIS
Sbjct: 372 GFTLRK--------GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 423

Query: 234 GYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           GYAQ G   EAIE++  ++ EG I+ N  T+ SVL A S   AL  G ++H  +L+  + 
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             V +  SL DMY KCG L  +  +F  +     + WN ++  +  HG G + V LF  M
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            +E  VKPD +T++ +LS CSH G+ D G   F E++    G  P ++HYGC+VDM GRA
Sbjct: 544 LDEG-VKPDHITFVTLLSACSHSGLVDEGQWCF-EMMQTDYGITPSLKHYGCMVDMYGRA 601

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G++  AL+FIK+M  +P A+I G+LL ACRVH NVD+G+   + L E+EPE+ G +V+LS
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YASAG+WE V  +R +   K + K PG S +E+D  +  F+  +++HPM EE+  ++ 
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
            L  K K  GYVPD   VL DV++++KE +L+ HSE+LA+ F LI TP    IR+ KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +C DCH+  KF+SK+  R++ +RD NRFHH   G CSCGDYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 206/379 (54%), Gaps = 10/379 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M + GL   +  + ++L AC   RT+  G ++H   +K  +   VY+   LI  Y++ + 
Sbjct: 144 MLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +AR +FDEM  R++ SW AMIS Y Q  ++ EAL L   +   D+     T  ++L++
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDS----VTVVSLLSA 256

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C  A  F  G  IHS  IK   ES ++V + L+D+YA+ GR+ + + VF+ +  RD++S 
Sbjct: 257 CTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISW 316

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            +II  Y        AI LF+++++  +  + +T  S+ + LS L  +   + V    LR
Sbjct: 317 NSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLR 376

Query: 289 -FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                  + + N+++ MY+K G +  +R VF+ +    VISWN ++ GY+++G   E +E
Sbjct: 377 KGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIE 436

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           ++N+M EE ++  +  T+++VL  CS  G   +G+ +   ++  K+G   ++     + D
Sbjct: 437 MYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL--KNGLYLDVFVVTSLAD 494

Query: 408 MLGRAGRVGEALEFIKNMP 426
           M G+ GR+ +AL     +P
Sbjct: 495 MYGKCGRLEDALSLFYQIP 513



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 184/369 (49%), Gaps = 13/369 (3%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           ++  TL   C N   L+  + +HA ++ +     V +  +L+  Y     ++ AR  FD 
Sbjct: 55  DDVHTLFRYCTN---LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDH 111

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLF-IRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           ++ R+V +W  MIS Y +  +S E +  F + ML S   P+  TF +VL +C        
Sbjct: 112 IQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID--- 168

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G +IH L +K  F   +YV +SL+ +Y++   +  AR +F+ +P RD+ S  A+ISGY Q
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  +EA+ L   L+      + VT  S+L+A +       G  +HS+ ++  + S + +
Sbjct: 229 SGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N LID+Y++ G L   ++VFD M  R +ISWN+++  Y  +      + LF  MR  ++
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR-LSR 343

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           ++PD +T +++ S  S  G + R           K  F  +I     VV M  + G V  
Sbjct: 344 IQPDCLTLISLASILSQLG-DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402

Query: 418 ALEFIKNMP 426
           A      +P
Sbjct: 403 ARAVFNWLP 411



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L   K +H+ ++  +    V +   L+++Y   G++  +R  FD++  R V +WN M+ G
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH--GGMEDRGLAVFHEIVDCKD 393
           Y + G   EV+  F+L    + + PD  T+ +VL  C     G +   LA+       K 
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLAL-------KF 179

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           GF  ++     ++ +  R   VG A      MP     +    + G C+
Sbjct: 180 GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/664 (37%), Positives = 378/664 (56%), Gaps = 71/664 (10%)

Query: 40  GQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           GQ  KA+  M  +   G+E        +L +    R +  G++VH+ ++K   R  V + 
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184

Query: 97  TRLIVFYNKCECLSDARKMFD-------------------------------EMRERNVV 125
             L+  Y KC     A+ +FD                               +M ER++V
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           +W +MIS ++Q+ +   AL++F +MLR S   P+ FT A+VL++CA      +GKQIHS 
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304

Query: 185 IIKSNFE-SHIYVG--------------------------------SSLLDMYAKAGRIH 211
           I+ + F+ S I +                                 ++LLD Y K G ++
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A+ +F  L +RDVV+ TA+I GY Q G   EAI LFR +   G   N  T A++L+  S
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVAS 424

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWN 330
            LA+L HGKQ+H   ++      V + N+LI MY+K G++T + R FD +  ER  +SW 
Sbjct: 425 SLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWT 484

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +M++  ++HG   E +ELF  M  E  ++PD +TY+ V S C+H G+ ++G   F  + D
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEG-LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             D   P + HY C+VD+ GRAG + EA EFI+ MP EP     GSLL ACRVH N+D+G
Sbjct: 544 V-DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           +   +RL+ +EPEN+G Y  L+NLY++ G+WE+  ++R+ MK+  V K+ G SWIE+   
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +H F   D +HP + E+   +K++  + K+ GYVPD + VL+D++EE KE++L  HSEKL
Sbjct: 663 VHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKL 722

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI TP+   +R++KNLR+C DCH   KF+SK+ GR++ +RD  RFHH  +G CSC
Sbjct: 723 AIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSC 782

Query: 631 GDYW 634
            DYW
Sbjct: 783 RDYW 786



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 202/466 (43%), Gaps = 104/466 (22%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLR-GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           L L    E    LL   VN+   R   Q VH  +IK+     VYL   L+  Y+K     
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYAL 66

Query: 111 DARKMFDEMR-------------------------------ERNVVSWTAMISAYSQKAH 139
            ARK+FDEM                                +R+ VSWT MI  Y     
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQ 126

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +A+ +   M++   EP +FT   VL S A     E GK++HS I+K     ++ V +S
Sbjct: 127 YHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNS 186

Query: 200 LLDMYAK-------------------------------AGRIHEARGVFECLPERDVVSC 228
           LL+MYAK                                G++  A   FE + ERD+V+ 
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVL 287
            ++ISG+ Q G D  A+++F K+  + ++S +  T ASVL+A + L  L  GKQ+HSH++
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306

Query: 288 R--FEIPSYVVLQNSLIDMYSKCGSLTYSRR----------------------------- 316
              F+I   V+  N+LI MYS+CG +  +RR                             
Sbjct: 307 TTGFDISGIVL--NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 317 ----VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
               +F ++ +R V++W AM+VGY +HG   E + LF  M    + +P+S T  A+LS  
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSVA 423

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           S       G  +    V   + +   + +   ++ M  +AG +  A
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSN--ALITMYAKAGNITSA 467



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 168/402 (41%), Gaps = 83/402 (20%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQ--------IHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           P   + +T+L  C       + K         +H  +IKS     +Y+ ++L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 209 RIHEARGVFE--------------------------C-----LPERDVVSCTAIISGYAQ 237
               AR +F+                          C     LP+RD VS T +I GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           +G   +AI +   +  EG+     T  +VL +++    +  GK+VHS +++  +   V +
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 298 QNSLIDMYSKCGSLTYSRRVFD-------------------------------NMSERTV 326
            NSL++MY+KCG    ++ VFD                                M+ER +
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           ++WN+M+ G+++ G     +++F+ M  ++ + PD  T  +VLS C++      G  +  
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI-----KNMPFEPTAAI------LG 435
            IV    GF+        ++ M  R G V  A   I     K++  E   A+      LG
Sbjct: 304 HIVTT--GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
            +  A  +  ++   + V    M +  E  G+Y    NL+ S
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 373/638 (58%), Gaps = 9/638 (1%)

Query: 3   RPKK---QSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL---GLEM 56
           +PKK     R    L  TQ + T PS   +      +C+  +    L E+  L   G  +
Sbjct: 57  KPKKVEYMERNVPVLEDTQIRKTSPSGLCSQIEKLVVCNRHREAMELFEILELEHDGYGV 116

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
               YD L++ACV  R++RG +RV  +MI + + P +Y+  R++  + KC  + DARK+F
Sbjct: 117 GASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLF 176

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           DEM E++V SW  M+       +  EA  LF+ M +   +    TFAT++ + AG    +
Sbjct: 177 DEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQ 236

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +GKQIHS  +K       +V  +L+DMY+K G I +A  VF+ +PE+  V   +II+ YA
Sbjct: 237 VGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYA 296

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             G  EEA+ L+ +++  G   ++ T + V+   + LA+L H KQ H+ ++R    + +V
Sbjct: 297 LHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIV 356

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
              +L+D YSK G +  +R VF+ M  + VISWNA++ GY  HG G+E VE+F  M +E 
Sbjct: 357 ANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEG 416

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V P  VT+LAVLS CS+ G+  RG  +F+ +       +P   HY C++++LGR   + 
Sbjct: 417 -VTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKR-DHKVKPRAMHYACMIELLGRESLLD 474

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA   I+  PF+PTA +  +LL ACR+H N+++G+   ++L  +EPE   NY++L NLY 
Sbjct: 475 EAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYN 534

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S+G+ ++   + + +K+K +   P  SW+E+ +  + F   D+SH   +E+  KV  L V
Sbjct: 535 SSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMV 594

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           +  + GY  +   +L DVDEE+ +++L  HSEKLA+ FGLI TP   P+++ +  R+C D
Sbjct: 595 EICKHGYAEENETLLPDVDEEE-QRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGD 653

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+  K ++ V GR++ +RD +RFHH   G+CSCGDYW
Sbjct: 654 CHSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/537 (42%), Positives = 337/537 (62%), Gaps = 12/537 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS AR++FDE   R+V +WTAM+S Y Q     EA   F  M     E N
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKN 296

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  ++         ++ +++   +   N  S     ++++  Y + G I +AR  F+
Sbjct: 297 EVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFD 352

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD VS  AII+GYAQ G  EEA+ +F +++ +G   N  T+   L+  + +AAL  
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H   ++    +   + N+L+ MY KCGS+  +   F+ + E+ V+SWN ML GY++
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEP 397
           HG GR+ + +F  M+    VKPD +T + VLS CSH G+ DRG   F+ +   KD G  P
Sbjct: 473 HGFGRQALTVFESMKTAG-VKPDEITMVGVLSACSHTGLLDRGTEYFYSMT--KDYGVIP 529

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
             +HY C++D+LGRAGR+ EA + I+NMPF+P AA  G+LLGA R+H N ++GE   + +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++EP+N+G YV+LSNLYA++GRW D  ++R  M++  V K PG SW+E+   +HTF   
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D SHP +E + A +++L +K +E GYV     VL+DV+EE+KE +L  HSEKLA+ FG++
Sbjct: 650 DCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 709

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             P G PIRV+KNLR+C DCH+  K +SK+ GR + LRD +RFHH  EG CSCGDYW
Sbjct: 710 TIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 159/343 (46%), Gaps = 28/343 (8%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F+ M  R+ VS+ AMIS Y + +    A NLF +M   D     F++  +LT    
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVMLTGYVR 123

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                  +++  L+     E  +   +SLL  YA+ G + EAR VF+ +PE++ +S   +
Sbjct: 124 NCRLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++ Y   G  EEA  LF       +IS    +  ++        LG  + +   +   + 
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVRDA 235

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S+    N++I  Y++ G L+ +RR+FD    R V +W AM+ GY ++GM  E    F+ 
Sbjct: 236 ISW----NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDE 291

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M E+N+     V+Y A+++G       D    +F E + C++     I  +  ++   G+
Sbjct: 292 MPEKNE-----VSYNAMIAGYVQTKKMDIARELF-ESMPCRN-----ISSWNTMITGYGQ 340

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVDIGEFV 453
            G + +A +F   MP     +    + G A   HY   +  FV
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFV 383



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 143/298 (47%), Gaps = 23/298 (7%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR++FD M E++VVSW +++S Y+Q  +  EA  +F  M     E N  ++  +L +
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAA 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  E       L+ +S  +  +   + L+  + +  ++ +AR +F+ +P RD +S 
Sbjct: 183 YVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +ISGYAQ G   +A  LF     E    +  T+ ++++       L   K     +  
Sbjct: 239 NTMISGYAQGGGLSQARRLFD----ESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
               SY    N++I  Y +   +  +R +F++M  R + SWN M+ GY + G   +  + 
Sbjct: 295 KNEVSY----NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKF 350

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           F++M +      D V++ A+++G +  G  +  L +F EI   +DG       +GC +
Sbjct: 351 FDMMPQR-----DCVSWAAIIAGYAQSGHYEEALNMFVEIK--QDGESLNRATFGCAL 401



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +E+   G  +    +   L+ C +   L  G+++H   +K  Y    ++   L+  Y K
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + +A   F+ + E++VVSW  M++ Y++     +AL +F  M  +  +P+E T   V
Sbjct: 442 CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501

Query: 166 LTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L++C+     + G +  +S+             + ++D+  +AGR+ EA+ +   +P + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 224 DVVSCTAI-----ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
              S  A+     I G  +LG  E+A E+  K++ +   S      S L A SG
Sbjct: 562 GAASWGALLGASRIHGNTELG--EKAAEMVFKMEPQN--SGMYVLLSNLYAASG 611



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           +  + + G    A  VF  +P R  VS  A+ISGY +      A  LF ++    + S  
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFS-- 113

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
             +  +LT       LG  +++   +   ++ S+    NSL+  Y++ G +  +R VFDN
Sbjct: 114 --WNVMLTGYVRNCRLGDARRLFDLMPEKDVVSW----NSLLSGYAQNGYVDEAREVFDN 167

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           M E+  ISWN +L  Y  +G   E   LF     E+K   D +++  ++ G
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLF-----ESKSDWDLISWNCLMGG 213


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 364/601 (60%), Gaps = 9/601 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N Q  K   +M   G++     +  +L        +  G +VH  +IK+     +++   
Sbjct: 174 NEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y+K   +SDA+ +FD M  RN VSW +MI+ +       EA  LF RM     +  
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           +  FATV+  CA        KQ+H  +IK+  +  + + ++L+  Y+K   I +A  +F 
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF- 352

Query: 219 CLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSG-LA 274
           C+    ++VVS TAIISGY Q G  + A+ LF +++  EG+  N  T++SVL A +   A
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTA 412

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           ++  GKQ HS  ++    + + + ++L+ MY+K G++  +  VF    +R ++SWN+M+ 
Sbjct: 413 SVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMIS 472

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD- 393
           GY++HG G++ +++F  MR +N ++ D +T++ V+S C+H G+ + G   F  +V  KD 
Sbjct: 473 GYAQHGCGKKSLKIFEEMRSKN-LELDGITFIGVISACTHAGLVNEGQRYFDLMV--KDY 529

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
              P +EHY C+VD+  RAG + +A++ I  MPF   A I  +LL ACRVH NV +GE  
Sbjct: 530 HIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELA 589

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L+ ++P+++  YV+LSN+YA+AG W++  +VR+LM  K V K+ G SWIE+     +
Sbjct: 590 AEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFS 649

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D SHP  + +  K+++LS++ K+AGY PD   VL+DV+EE KE +L  HSE+LA+ 
Sbjct: 650 FMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIA 709

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TP G PI+++KNLR+C DCH   K +SK+ GR + +RD NRFHH   G+CSCGDY
Sbjct: 710 FGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDY 769

Query: 634 W 634
           W
Sbjct: 770 W 770



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 193/348 (55%), Gaps = 2/348 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G++VH   IK  +   V + T L+  Y K E + D  ++FDEMR +NVVSWT++++ Y Q
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              + +AL LF +M     +PN FTFA VL   A     E G Q+H+++IKS  +S I+V
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G+S+++MY+K+  + +A+ VF+ +  R+ VS  ++I+G+   GLD EA ELF ++++EG+
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
                 +A+V+   + +  +   KQ+H  V++      + ++ +L+  YSKC  +  + +
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 317 VFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +F  M   + V+SW A++ GY ++G     + LF  MR E  V+P+  T+ +VL+ C+  
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAP 410

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
                    FH     K GF   +     +V M  + G +  A E  K
Sbjct: 411 TASVEQGKQFHS-CSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK 457



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 159/263 (60%), Gaps = 1/263 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           ++++FDE  ++ +     ++  +S+   + EALNLF+ + RS +  +  + + VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
            F   +GKQ+H   IK  F   + VG+SL+DMY K   + +   VF+ +  ++VVS T++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++GY Q GL+E+A++LF ++Q+EG+  N  T+A+VL  L+   A+  G QVH+ V++  +
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S + + NS+++MYSK   ++ ++ VFD+M  R  +SWN+M+ G+  +G+  E  ELF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 352 MREENKVKPDSVTYLAVLSGCSH 374
           MR E  VK     +  V+  C++
Sbjct: 285 MRLEG-VKLTQTIFATVIKLCAN 306


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 363/575 (63%), Gaps = 2/575 (0%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           ++  +L  C     +   +  H   ++   +  V L   LI  Y+KC  +  AR++FD M
Sbjct: 65  DFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGM 124

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            ER++VSW  MI  Y++     EAL++F  M     + +EFT ++VL++C         K
Sbjct: 125 LERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECK 184

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H L +K++ + ++YVG++LLD+YAK G I++A  VFE + ++  V+ +++++GY Q  
Sbjct: 185 KLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSK 244

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA+ L+R+ Q   +  N  T +SV+ A S LAAL  GKQ+H+ + +    S V + +
Sbjct: 245 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVAS 304

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           S +DMY+KCGSL  S  +F  + E+ +  WN ++ G++KH   +EV+ LF  M+++  + 
Sbjct: 305 SAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDG-MH 363

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT+ ++LS C H G+ + G   F +++    G  P + HY C+VD+LGRAG + EA 
Sbjct: 364 PNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAY 422

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E IK++PFEPTA+I GSLL +CRV  N+++ E   ++L E+EPENAGN+V+LSN+YA+  
Sbjct: 423 ELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANK 482

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE++ + R+L+++  V K  G+SWI++   +H F   + SHP   E+   +  L ++ +
Sbjct: 483 QWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELR 542

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GY P +   L+DV+  +KE++L+ HSEKLAL FGL+  PEG+ +R++KNLRICVDCH 
Sbjct: 543 KFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHE 602

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F K  S    R + +RD NRFHH  +G CSCG++W
Sbjct: 603 FMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 90/171 (52%), Gaps = 1/171 (0%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           + LE       +++ AC N   L  G+++HA + K+ +   V++ +  +  Y KC  L +
Sbjct: 259 MSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRE 318

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           +  +F E++E+N+  W  +IS +++ A   E + LF +M +    PNE TF+++L+ C  
Sbjct: 319 SYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 378

Query: 172 AFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
               E G++   L+  +     ++   S ++D+  +AG + EA  + + +P
Sbjct: 379 TGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIP 429


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/605 (37%), Positives = 364/605 (60%), Gaps = 33/605 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+L    N+  +  G+++H  + K  Y+  +++ + L+  Y K   ++DA ++F+E+ 
Sbjct: 141 FSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200

Query: 121 ERNVV-------------------------------SWTAMISAYSQKAHSFEALNLFIR 149
           E+N+V                               SWT +I+  +Q     EA++ F  
Sbjct: 201 EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKE 260

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++FTF +VLT+C G    + GKQIH+ II+++++ +I+VGS+LLDMY K   
Sbjct: 261 MGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRN 320

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  VF  +  ++V+S TA++ GY Q G  EEA+ +F  +Q   +  +  T  SV+++
Sbjct: 321 VKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISS 380

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + LA+L  G Q H   L   +  +V + N+LI +Y KCGSL ++ ++F  M  R  +SW
Sbjct: 381 CANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSW 440

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A++ GY++ G   E + LF  M     V PD VT++ VLS CS  G+ ++G   F  +V
Sbjct: 441 TALVSGYAQFGKANETISLFETMLAHGIV-PDGVTFVGVLSACSRAGLVEKGYHYFECMV 499

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             +    P  +HY C++D+L RAGR+ EA  FI  MPF P A    +LL +CR++ N++I
Sbjct: 500 K-EHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEI 558

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G++  + L ++EP+N  +Y++LS++YA+ G+W+DV ++R+ M+E  V K+PG SWI+   
Sbjct: 559 GKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKN 618

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F A DRS P  +++ AK++ L +K  E GYVPDMS VL+DV++ +K K+L  HSEK
Sbjct: 619 KVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEK 678

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGL+  P+G  IRV+KNLR+C DCHN  K++S++  R++ +RD  RFH   +G CS
Sbjct: 679 LAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCS 738

Query: 630 CGDYW 634
           CGD+W
Sbjct: 739 CGDFW 743



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 195/358 (54%), Gaps = 38/358 (10%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y+ L+N       L+  + V  H+ +    P ++    L+  Y+K   L D +++FD M 
Sbjct: 43  YNNLINTYGKLGDLKNARNVFDHIPQ----PNLFSWNTLLSAYSKLGYLQDMQRVFDSMP 98

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGK 179
             +VVSW +++S Y+      E++ ++  ML+  +   N  TF+T+L   +     +LG+
Sbjct: 99  NHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGR 158

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE-------------------C- 219
           QIH  I K  ++S+++VGS L+DMYAK G I++A  +FE                   C 
Sbjct: 159 QIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCR 218

Query: 220 -----------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                      +PE+D +S T II+G  Q GL +EA++ F+++ +EG   +  T+ SVLT
Sbjct: 219 FIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLT 278

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A  G  AL  GKQ+H++++R +    + + ++L+DMY KC ++ Y+  VF  M  + VIS
Sbjct: 279 ACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVIS 338

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           W AMLVGY ++G   E V +F  M + N++ PD  T  +V+S C++    + G A FH
Sbjct: 339 WTAMLVGYGQNGYSEEAVRIFCDM-QRNEIHPDDFTLGSVISSCANLASLEEG-AQFH 394



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 16/333 (4%)

Query: 36  LCSNGQLTKALIEMATLGLE---MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           L  NG   +A+ +   +G+E   M    + ++L AC     L  G+++HA++I+T Y+  
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +++ + L+  Y KC  +  A  +F +MR +NV+SWTAM+  Y Q  +S EA+ +F  M R
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           ++  P++FT  +V++SCA     E G Q H   + S     + V ++L+ +Y K G +  
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEH 424

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS- 271
           A  +F  +  RD VS TA++SGYAQ G   E I LF  +   G++ + VT+  VL+A S 
Sbjct: 425 AHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSR 484

Query: 272 -GLAALGHGK---QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTV 326
            GL   G+      V  H +   IP +      +ID+ S+ G L  ++   + M      
Sbjct: 485 AGLVEKGYHYFECMVKEHRIT-PIPDHYT---CMIDLLSRAGRLEEAKNFINQMPFSPDA 540

Query: 327 ISWNAMLVGYSKHG---MGREVVELFNLMREEN 356
           I W  +L     +G   +G+   E  + +  +N
Sbjct: 541 IGWATLLSSCRLNGNLEIGKWAAESLHKLEPQN 573



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 11/201 (5%)

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           Y +++     L  L + + V  H+ +  + S+    N+L+  YSK G L   +RVFD+M 
Sbjct: 43  YNNLINTYGKLGDLKNARNVFDHIPQPNLFSW----NTLLSAYSKLGYLQDMQRVFDSMP 98

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
              V+SWN++L GY+ +G+  E V ++N+M ++  V  + +T+  +L   S+ G  D G 
Sbjct: 99  NHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGR 158

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +  +I   K G++  +     +VDM  + G + +A    + +P +        + G  R
Sbjct: 159 QIHGQIF--KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216

Query: 443 VHYNVDIGEFVGQRLMEIEPE 463
             + V+      ++L +  PE
Sbjct: 217 CRFIVE-----AEQLFDNMPE 232


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 363/602 (60%), Gaps = 8/602 (1%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   K L   ++M   G+E+      ++   C + R +  G+ VH+  +K C+     
Sbjct: 122 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 181

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A+ +F EM +R+VVS+T+MI+ Y+++  + EA+ LF  M    
Sbjct: 182 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 241

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+ +T   VL  CA     + GK++H  I +++    I+V ++L+DMYAK G + EA 
Sbjct: 242 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 301

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGL 273
            VF  +  +D++S   II GY++     EA+ LF  L  E   S +  T A VL A + L
Sbjct: 302 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 361

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +A   G+++H +++R    S   + NSL+DMY+KCG+L  +  +FD+++ + ++SW  M+
Sbjct: 362 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 421

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCK 392
            GY  HG G+E + LFN MR+   ++ D ++++++L  CSH G+ D G   F+ +  +CK
Sbjct: 422 AGYGMHGFGKEAIALFNQMRQAG-IEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 480

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHY C+VDML R G + +A  FI+NMP  P A I G+LL  CR+H++V + E 
Sbjct: 481 --IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 538

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           V +++ E+EPEN G YV+++N+YA A +WE V R+R+ + ++ + K+PG SWIE+   ++
Sbjct: 539 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 598

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D S+P  E + A ++++  +  E GY P     L D +E +KE+ L GHSEKLA+
Sbjct: 599 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 658

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
             G+I +  G  IRV KNLR+C DCH  AKF+SK+  R++ LRD NRFH   +G CSC  
Sbjct: 659 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 718

Query: 633 YW 634
           +W
Sbjct: 719 FW 720



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 216/385 (56%), Gaps = 7/385 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + G+EM    +  +  +  + R++ GG+++H  ++K+ +     +   L+ FY K +
Sbjct: 34  KMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ 93

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  ARK+FDEM ER+V+SW ++I+ Y     + + L++F++ML S  E +  T  +V  
Sbjct: 94  RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 153

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CA +    LG+ +HS+ +K+ F       ++LLDMY+K G +  A+ VF  + +R VVS
Sbjct: 154 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 213

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+GYA+ GL  EA++LF +++ EG+  +  T  +VL   +    L  GK+VH  + 
Sbjct: 214 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 273

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
             ++   + + N+L+DMY+KCGS+  +  VF  M  + +ISWN ++ GYSK+    E + 
Sbjct: 274 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 333

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LFNL+ EE +  PD  T   VL  C+     D+G  +   I+  ++G+  +      +VD
Sbjct: 334 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM--RNGYFSDRHVANSLVD 391

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAA 432
           M  + G +      + +M F+  A+
Sbjct: 392 MYAKCGAL-----LLAHMLFDDIAS 411



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 164/303 (54%), Gaps = 3/303 (0%)

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           FDE++    + W  +++  ++      ++ LF +M+ S  E + +TF+ V  S +     
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
             G+Q+H  I+KS F     VG+SL+  Y K  R+  AR VF+ + ERDV+S  +II+GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
              GL E+ + +F ++ V G+  +  T  SV    +    +  G+ VHS  ++       
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              N+L+DMYSKCG L  ++ VF  MS+R+V+S+ +M+ GY++ G+  E V+LF  M EE
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             + PD  T  AVL+ C+   + D G  V   I +   GF+  + +   ++DM  + G +
Sbjct: 241 G-ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSM 297

Query: 416 GEA 418
            EA
Sbjct: 298 QEA 300


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/537 (42%), Positives = 337/537 (62%), Gaps = 12/537 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS AR++FDE   R+V +WTAM+S Y Q     EA   F  M     E N
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKN 296

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  ++         ++ +++   +   N  S     ++++  Y + G I +AR  F+
Sbjct: 297 EVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFD 352

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD VS  AII+GYAQ G  EEA+ +F +++ +G   N  T+   L+  + +AAL  
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H   ++    +   + N+L+ MY KCGS+  +   F+ + E+ V+SWN ML GY++
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEP 397
           HG GR+ + +F  M+    VKPD +T + VLS CSH G+ DRG   F+ +   KD G  P
Sbjct: 473 HGFGRQALTVFESMKTAG-VKPDEITMVGVLSACSHTGLLDRGTEYFYSMT--KDYGVIP 529

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
             +HY C++D+LGRAGR+ EA + I+NMPF+P AA  G+LLGA R+H N ++GE   + +
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMV 589

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++EP+N+G YV+LSNLYA++GRW D  ++R  M++  V K PG SW+E+   +HTF   
Sbjct: 590 FKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVG 649

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D SHP +E + A +++L +K +E GYV     VL+DV+EE+KE +L  HSEKLA+ FG++
Sbjct: 650 DCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 709

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             P G PIRV+KNLR+C DCH+  K +SK+ GR + LRD +RFHH  EG CSCGDYW
Sbjct: 710 TIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 23/298 (7%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DAR++FD M E++VVSW +++S Y+Q  +  EA  +F  M     E N  ++  +L +
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAA 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  E       L+ +S  +  +   + L+  + +  ++ +AR +F+ +P RD +S 
Sbjct: 183 YVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +ISGYAQ G   +A    R+L  E    +  T+ ++++       L   K     +  
Sbjct: 239 NTMISGYAQGGGLSQA----RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
               SY    N++I  Y +   +  +R +F++M  R + SWN M+ GY + G   +  + 
Sbjct: 295 KNEVSY----NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKF 350

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           F++M +      D V++ A+++G +  G  +  L +F EI   +DG       +GC +
Sbjct: 351 FDMMPQR-----DCVSWAAIIAGYAQSGHYEEALNMFVEIK--QDGESLNRATFGCAL 401



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 159/343 (46%), Gaps = 28/343 (8%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F+ M  R+ VS+ AMIS Y + +    A NLF +M   D     F++  +LT    
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVMLTGYVR 123

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                  +++  L+     E  +   +SLL  YA+ G + EAR VF+ +PE++ +S   +
Sbjct: 124 NCRLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++ Y   G  EEA  LF       +IS    +  ++        LG  + +   +   + 
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVRDA 235

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S+    N++I  Y++ G L+ +RR+FD    R V +W AM+ GY ++GM  E    F+ 
Sbjct: 236 ISW----NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDE 291

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M E+N+     V+Y A+++G       D    +F E + C++     I  +  ++   G+
Sbjct: 292 MPEKNE-----VSYNAMIAGYVQTKKMDIARELF-ESMPCRN-----ISSWNTMITGYGQ 340

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVDIGEFV 453
            G + +A +F   MP     +    + G A   HY   +  FV
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFV 383



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 58/260 (22%)

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D G   F+ + + +    P  +HY C++D+LGR  R+ E                 G
Sbjct: 778 GLLDTGAEYFYPMNE-EYSVTPTSKHYTCMIDLLGRVDRLEE-----------------G 819

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGA R+H N ++GE   Q   ++ P+N+G                 ++++R++     
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV----G 858

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K PG SW E+   +HTF         RE +   +++L +K +E               
Sbjct: 859 VQKVPGYSWFEVQNKIHTFSVGLFLSRERENIGF-LEELDLKMRER-------------- 903

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN-LRICVDCHNFAKFVSKVYGRKVSL 614
           EE+KE+ L   SE LA   G++  P G P RV+K  + +C DC +  K +SK+ GR ++L
Sbjct: 904 EEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITL 963

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD +RF+   E  CSCG+YW
Sbjct: 964 RDSHRFN---ESICSCGEYW 980



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +E+   G  +    +   L+ C +   L  G+++H   +K  Y    ++   L+  Y K
Sbjct: 382 FVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + +A   F+ + E++VVSW  M++ Y++     +AL +F  M  +  +P+E T   V
Sbjct: 442 CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGV 501

Query: 166 LTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L++C+     + G +  +S+             + ++D+  +AGR+ EA+ +   +P + 
Sbjct: 502 LSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 224 DVVSCTAI-----ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
              S  A+     I G  +LG  E+A E+  K++ +   S      S L A SG
Sbjct: 562 GAASWGALLGASRIHGNTELG--EKAAEMVFKMEPQN--SGMYVLLSNLYAASG 611



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           +  + + G    A  VF  +P R  VS  A+ISGY +      A  LF ++    + S  
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFS-- 113

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
             +  +LT       LG  +++   +   ++ S+    NSL+  Y++ G +  +R VFDN
Sbjct: 114 --WNVMLTGYVRNCRLGDARRLFDLMPEKDVVSW----NSLLSGYAQNGYVDEAREVFDN 167

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           M E+  ISWN +L  Y  +G   E   LF     E+K   D +++  ++ G
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLF-----ESKSDWDLISWNCLMGG 213


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 355/571 (62%), Gaps = 3/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     L  G+RVH  + +  +   V+++  L+  Y KC  +  AR +F+ + +RN
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN 234

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSWT+MIS Y Q     EAL +F +M + + +P+     +VL +       E GK IH 
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHG 294

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            ++K   E    +  SL  MYAK G++  AR  F+ +   +V+   A+ISGYA+ G   E
Sbjct: 295 CVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNE 354

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF+++  + + ++ +T  S + A + + +L   K +  ++ + E  + V +  +LID
Sbjct: 355 AVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALID 414

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           M++KCGS+  +R VFD   ++ V+ W+AM+VGY  HG G++ ++LF  M++   V P+ V
Sbjct: 415 MFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAG-VCPNDV 473

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ +L+ C+H G+ + G  +FH +     G E   +HY CVVD+LGR+G + EA +FI 
Sbjct: 474 TFVGLLTACNHSGLVEEGWELFHSMK--YYGIEARHQHYACVVDLLGRSGHLNEAYDFIT 531

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            MP EP  ++ G+LLGAC+++ +V +GE+  ++L  ++P N G+YV LSNLYAS+  W+ 
Sbjct: 532 TMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDS 591

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V +VR LM+EK ++KD G S IE++  L  F   D+SHP  +E+  +++ L  + KEAG+
Sbjct: 592 VAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGF 651

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           +P +  VL+D+++E+KE+ L  HSE+LA+ +GLI T  G  +R+ KNLR C++CH+  K 
Sbjct: 652 IPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKL 711

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD NRFHH   G CSC DYW
Sbjct: 712 ISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 195/360 (54%), Gaps = 6/360 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL+  V++R L    ++HA ++ +      +L T+ +        +  ARK+FDE  
Sbjct: 74  FSSLLDHSVHKRHL---NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFP 130

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E +V  W A+I  YS      +A+ ++ RM  S   P+ FT   VL +C+G    E+GK+
Sbjct: 131 EPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR 190

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  I +  FES ++V + L+ +YAK GR+ +AR VFE L +R++VS T++ISGY Q GL
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ +F +++   +  +++   SVL A + +  L  GK +H  V++  +     L  S
Sbjct: 251 PMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS 310

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L  MY+KCG +  +R  FD M    V+ WNAM+ GY+K+G   E V LF  M  +N ++ 
Sbjct: 311 LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKN-IRT 369

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DS+T  + +  C+  G  D  LA +      K  +  ++     ++DM  + G V  A E
Sbjct: 370 DSITVRSAILACAQVGSLD--LAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 136/272 (50%), Gaps = 1/272 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  +   L  G+ +H  ++K        L   L   Y KC  +  AR  FD+M   
Sbjct: 275 SVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIP 334

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+ W AMIS Y++  ++ EA+ LF  M+  +   +  T  + + +CA     +L K + 
Sbjct: 335 NVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMG 394

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I K+ + + ++V ++L+DM+AK G +  AR VF+   ++DVV  +A+I GY   G  +
Sbjct: 395 DYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQ 454

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +AI+LF  ++  G+  N VT+  +LTA +    +  G ++   +  + I +       ++
Sbjct: 455 DAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVV 514

Query: 303 DMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           D+  + G L  +      M  E  V  W A+L
Sbjct: 515 DLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 357/589 (60%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M   GL        ++L AC        G+++H  MIK       Y+   L+  Y K
Sbjct: 291 LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK 350

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L DARK+FD M  R+++   A+IS  S      EAL+LF  + +     N  T A V
Sbjct: 351 NHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAV 410

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A        +Q+H+L +K  F    +V + L+D Y K   + +A  VFE     D+
Sbjct: 411 LKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDI 470

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++CT++I+  +Q    E AI+LF ++  +G+  +    +S+L A + L+A   GKQVH+H
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++ +  S     N+L+  Y+KCGS+  +   F ++ ER V+SW+AM+ G ++HG G+  
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +ELF  M +E  + P+ +T  +VL  C+H G+ D     F+ + +   G +   EHY C+
Sbjct: 591 LELFGRMVDEG-INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF-GIDRTEEHYSCM 648

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++ +A+E + +MPF+  A+I G+LLGA RVH + ++G+   ++L  +EPE +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N YASAG W +V +VR+LMK+  + K+P  SWIE+   +HTF   D+SHPM +
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTK 768

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ AK+ +L     +AG+VP++   L+D+D  +KE +L  HSE+LA+ F L+ TP GAPI
Sbjct: 769 EIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPI 828

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+SK+  R++ +RD NRFHH  +GTCSCGDYW
Sbjct: 829 RVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 169/296 (57%), Gaps = 2/296 (0%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISA 133
           R G +VHA  + T +   V++   L+  Y     + DAR++F+E   ERN VSW  ++SA
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y +     +A+ +F  M+ S  +P EF F+ V+ +C G+   E G+Q+H+++++  ++  
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++  ++L+DMY K GR+  A  +FE +P+ DVVS  A+ISG    G D  AIEL  +++ 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G++ N  T +S+L A SG  A   G+Q+H  +++    S   +   L+DMY+K   L  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           +R+VFD M  R +I  NA++ G S  G   E + LF  +R+E  +  +  T  AVL
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG-LGVNRTTLAAVL 411



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 158/311 (50%), Gaps = 7/311 (2%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G  +HA ++K+        R  LI FY+KC     AR++FDE+ +   VSW++++
Sbjct: 18  QALLPGAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLV 75

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +AYS       A+  F  M       NEF    VL     A    LG Q+H++ + + F 
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFG 132

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           S ++V ++L+ MY   G + +AR VF E   ER+ VS   ++S Y +     +AI++F +
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +   G+      ++ V+ A +G   +  G+QVH+ V+R      V   N+L+DMY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +  +F+ M +  V+SWNA++ G   +G     +EL   M+    V P+  T  ++L 
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFTLSSILK 311

Query: 371 GCSHGGMEDRG 381
            CS  G  D G
Sbjct: 312 ACSGAGAFDLG 322



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T +  LT  +   AL  G  +H+ +L+    S    +N LI  YSKC     +RRVFD +
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLK--SGSLASFRNHLISFYSKCRRPCCARRVFDEI 63

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +   +SW++++  YS +G+ R  ++ F+ MR E
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/666 (38%), Positives = 381/666 (57%), Gaps = 46/666 (6%)

Query: 11  FSSLTFTQQQL-TVPSFPPNPQNLKTL-----CSNGQLTKALIEMATLGLEMRFEE---Y 61
           F SL + QQ    +P   PN     TL      S+      LI +  L     F +   +
Sbjct: 82  FPSLDYAQQVFDQIPH--PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTF 139

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
             L+ A      L  G+  H  +IK      V++   LI FY KC  L    ++F  +  
Sbjct: 140 PFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPR 199

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+VVSW +MI+A+ Q     EAL LF  M   + +PN  T   VL++CA    FE G+ +
Sbjct: 200 RDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWV 259

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------------ 229
           HS I ++     + + +++LDMY K G + +A+ +F+ +PE+D+VS T            
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEY 319

Query: 230 -------------------AIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTA 269
                              A+IS Y Q G  +EA+ELF +LQ+      + VT  S L+A
Sbjct: 320 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSA 379

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L A+  G  +H ++ +  +     L  SLIDMY KCG L  +  VF ++  + V  W
Sbjct: 380 CAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVW 439

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           +AM+ G + HG G++ + LF+ M +E+KVKP++VT+  +L  CSH G+ + G   F+++ 
Sbjct: 440 SAMIAGLAMHGHGKDAIALFSKM-QEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM- 497

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           +   G  P ++HY C+VD+LGRAG + EA+E I+ MP  P A++ G+LLGAC +H NV +
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVL 557

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
            E    +L+E+EP N G YV+LSN+YA AG+W+ V+ +R+LM++  + K+PG S IE+D 
Sbjct: 558 AEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDG 617

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLLGHSE 568
           I+H F   D SHP  +++ AK+ ++  + +  GYVP+ S +L  V+EE  KE+ L  HSE
Sbjct: 618 IVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSE 677

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FGLI T +  PIR++KNLR+C DCH+ AK VSK+Y R++ LRD+ RFHH  EG C
Sbjct: 678 KLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHC 737

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 738 SCMDYW 743



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 216/428 (50%), Gaps = 42/428 (9%)

Query: 28  PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTL--LNACVNQRTLRGGQRVHAHMI 85
           PNP  L +L  +  L        TL  +  F  + TL  ++ C   + L+   ++HA M+
Sbjct: 4   PNP-CLVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLK---QIHAQML 59

Query: 86  KTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           +T      +  +RLI     +    L  A+++FD++   N+ +W  +I AY+  ++  ++
Sbjct: 60  RTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119

Query: 144 LNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           L +F+RML    + P++FTF  ++ + +       GK  H ++IK    S +++ +SL+ 
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIH 179

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
            YAK G +     VF  +P RDVVS  ++I+ + Q G  EEA+ELF++++ + +  N +T
Sbjct: 180 FYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGIT 239

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
              VL+A +  +    G+ VHS++ R  I   + L N+++DMY+KCGS+  ++R+FD M 
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMP 299

Query: 323 ERTVISWNAMLVGYSK-------------------------------HGMGREVVELFNL 351
           E+ ++SW  MLVGY+K                                G  +E +ELF+ 
Sbjct: 300 EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHE 359

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           ++     KPD VT ++ LS C+  G  D G    H  +  K G +        ++DM  +
Sbjct: 360 LQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIK-KQGMKLNCHLTTSLIDMYCK 417

Query: 412 AGRVGEAL 419
            G + +AL
Sbjct: 418 CGDLQKAL 425


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 362/620 (58%), Gaps = 34/620 (5%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
             EM   G+         +++AC   R L  G+RV A++ +   +    +   L+  Y K
Sbjct: 220 FFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMK 279

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  A+++FDE  +RN+V +  ++S Y+++  + EAL +   ML+    P+  T  + 
Sbjct: 280 CGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSA 339

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---------------- 209
           +++ A       GK  H  +I++  E    +G+ ++DMY K G+                
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 210 ---------------IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
                          +  A  VF  +PER+ V    +ISG  Q  L E+AIELFR++Q E
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+ ++ VT   + +A   L A    K VH+++ +  IP  + L  +L+DM+++CG    +
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSA 519

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            +VF+ M+ER V +W A +   +  G G     LFN M  +  VKPD V ++ VL+ CSH
Sbjct: 520 MQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQG-VKPDVVLFVQVLTACSH 578

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GG  ++GL +F  + D   G  P+IEHYGC+VD+LGRAG + EA + IK+MP EP   + 
Sbjct: 579 GGQVEQGLHIFSLMED--HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVW 636

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLL ACRVH NV++  +  +R+ E+ P+ AG +V+LSN+YASAG+W DV RVR  ++EK
Sbjct: 637 GSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREK 696

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            V K PG S ++++ ++H F + D SHP    ++  +++++ +F +AG++PD+S VL DV
Sbjct: 697 GVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDV 756

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           DE++KE +L  HSEKLA+ FGLI T    PIRV+KNLR+C DCH+FAK  S +Y R++ +
Sbjct: 757 DEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIV 816

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD NRFH   +G CSC DYW
Sbjct: 817 RDNNRFHFFRQGLCSCCDYW 836



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 202/409 (49%), Gaps = 32/409 (7%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M  LG+      +  +L+ C        G +VH  ++K      V+++  LI FY +C
Sbjct: 120 VRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAEC 179

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +    K+F+ M ERNVVSWT++I  Y++     EA++LF  M+ +   P+  T   V+
Sbjct: 180 GHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVI 239

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++CA     ++G+++ + I +   + +  + ++L+DMY K G I  A+ +F+   +R++V
Sbjct: 240 SACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 299

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
               I+S YA+ GL  EA+ +  ++  +G   + VT  S ++A + L  L +GK  H +V
Sbjct: 300 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYV 359

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           +R  +  +  + N +IDMY KCG    + RVFD MS +TV+SWN++  G+ ++G      
Sbjct: 360 IRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAW 419

Query: 347 ELFNLMREENKV------------------------------KPDSVTYLAVLSGCSHGG 376
           E+FN + E N V                              K D VT + + S C + G
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG 479

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             +    V H  ++ K+G   ++     +VDM  R G    A++    M
Sbjct: 480 APELAKWV-HTYIE-KNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 526



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 169/322 (52%), Gaps = 14/322 (4%)

Query: 66  NACVNQ-----RTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFD 117
           ++C+N+     +TL   +++H  + K          T+L+         E L  ARK F+
Sbjct: 25  DSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFE 84

Query: 118 EMRER-----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
             +E       +    ++I  YS      EA+ L++RML     PN +TF  VL+ C   
Sbjct: 85  LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKI 144

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
             F  G Q+H  ++K   E  +++ + L+  YA+ G +     VFE + ER+VVS T++I
Sbjct: 145 AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLI 204

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            GYA+    +EA+ LF ++   G+  + VT   V++A + L  L  G++V +++    + 
Sbjct: 205 CGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLK 264

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
              V+ N+L+DMY KCG++  ++R+FD   +R ++ +N +L  Y++ G+ RE + + + M
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324

Query: 353 REENKVKPDSVTYLAVLSGCSH 374
            ++   +PD VT L+ +S  + 
Sbjct: 325 LQQGP-RPDRVTMLSAISASAQ 345



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 276 LGHGKQVHSHVLRF---EIPSYVV-LQNSLIDMYSKCGSLTYSRRVF-----DNMSERTV 326
           L   KQ+H  + +    +IPS +  L N+  ++ S   SL Y+R+ F     D  S+  +
Sbjct: 38  LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASP-ESLDYARKAFELFKEDVRSDDAL 96

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
              N+++ GYS  G+GRE + L+  M     V P+  T+  VLSGC+       G+ V  
Sbjct: 97  FMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +V  K G E ++    C++      G +    +  + M
Sbjct: 156 SVV--KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGM 192


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/583 (40%), Positives = 346/583 (59%), Gaps = 21/583 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC        G  +H++ IK      +++  +LI  Y +   L D +K+FD M  R
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVR 311

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF---ATVLT------SCAGAF 173
           +++SW ++I AY        A+ LF  M  S  +P+  T    A++L+      +C    
Sbjct: 312 DLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQ 371

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
           GF L K          F   I +G++++ MYAK G +  AR VF  LP +DV+S   IIS
Sbjct: 372 GFTLRK--------GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIIS 423

Query: 234 GYAQLGLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           GYAQ G   EAIE++  ++ EG  + +N  T+ SVL A S   AL  G ++H  +L+  +
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 483

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              V +  SL DMY KCG L  +  +F  +     + WN ++  +  HG G + V LF  
Sbjct: 484 YLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 543

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M +E  VKPD +T++ +LS CSH G+ D G   F E++    G  P ++HYGC+VD+ GR
Sbjct: 544 MLDEG-VKPDHITFVTLLSACSHSGLVDEGEWCF-EMMQTDYGITPSLKHYGCMVDLYGR 601

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
           AG++  AL FIK+MP +P A+I G+LL ACRVH NVD+G+   + L E+EPE+ G +V+L
Sbjct: 602 AGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 661

Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV 531
           SN+YASAG+WE V  +R +   K + K PG S +E+D  +  F+  +++HPM EE+  ++
Sbjct: 662 SNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 721

Query: 532 KQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
             L  K K  GYVPD   VL DV++++KE +L+ HSE+LA+ F LI TP    IR+ KNL
Sbjct: 722 TALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNL 781

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+C DCH+  KF+SK+  R++ +RD NRFHH   G CSCGDYW
Sbjct: 782 RVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 195/406 (48%), Gaps = 25/406 (6%)

Query: 22  TVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
            V  F  +   L+    NG  +K +            ++  TL   C N   L+  + +H
Sbjct: 30  VVREFSASANALQDCWKNGNESKEI------------DDVHTLFRYCTN---LQSAKCLH 74

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
           A ++ +     V +  +L+  Y     ++ AR  FD +  R+V +W  MIS Y +  +S 
Sbjct: 75  ARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSS 134

Query: 142 EALNLF-IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
           E +  F + ML S  +P+  TF +VL +C        G +IH L +K  F   +YV +SL
Sbjct: 135 EVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASL 191

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           + +Y + G +  AR +F+ +P RD+ S  A+ISGY Q G  +EA+ L   L+      + 
Sbjct: 192 IHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA----MDS 247

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           VT  S+L+A +       G  +HS+ ++  + S + + N LID+Y++ GSL   ++VFD 
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDR 307

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  R +ISWN+++  Y  +      + LF  MR  ++++PD +T +++ S  S  G E R
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAILLFQEMR-LSRIQPDCLTLISLASILSQLG-EIR 365

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
                      K  F  +I     VV M  + G V  A      +P
Sbjct: 366 ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L   K +H+ ++       V +   L+++Y   G++  +R  FD++  R V +WN M+ G
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH--GGMEDRGLAVFHEIVDCKD 393
           Y + G   EV+  F+L    + ++PD  T+ +VL  C +   G +   LA+       K 
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLAL-------KF 179

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           GF  ++     ++ +  R G V  A      MP     +    + G C+
Sbjct: 180 GFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/604 (39%), Positives = 358/604 (59%), Gaps = 35/604 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ A    +  R G  VH   IK  +   +Y+   L+ FY  C  LS A ++F  +  ++
Sbjct: 132 VIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKD 191

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSW +MISA++Q     +AL LF++M R +  PN  T   VL++CA     E G+ + S
Sbjct: 192 VVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCS 251

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG---- 239
            I +   +  + + +++LDMY K G + +A+ +F+ +PERDV S T ++ GYA++G    
Sbjct: 252 YIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDA 311

Query: 240 ---------------------------LDEEAIELFRKLQVEGMIS-NYVTYASVLTALS 271
                                        +EA+ +F +LQ+  +   + VT  S L+A +
Sbjct: 312 ARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACA 371

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L A+  G  +H ++ R  I     L +SL+DMY+KCGSL  +  VF ++ ER V  W+A
Sbjct: 372 QLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSA 431

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G   HG G+  ++LF  M+E  KVKP+SVT+  VL  CSH G+ D G   FHE+   
Sbjct: 432 MIAGLGMHGRGKAAIDLFFEMQEA-KVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPV 490

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE++HY C+VD+LGRAG + EA+E I  M   P+A++ G+LLGAC +H NV++GE
Sbjct: 491 Y-GVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGE 549

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
               +L+++EP N G  V+LSN+YA  GRWE V+ +R+LM++  + K+PG S IE +  +
Sbjct: 550 LASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNV 609

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLLGHSEKL 570
           H F   D +HP+   + +K+++++ K K  GY P+ S +L  ++E+  KE+ L  HSEKL
Sbjct: 610 HEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKL 669

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGL+      PIRV+KNLRIC DCH FAK VS+VY R + LRD+ RFHH  +G CSC
Sbjct: 670 AIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSC 729

Query: 631 GDYW 634
            DYW
Sbjct: 730 MDYW 733



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 214/436 (49%), Gaps = 55/436 (12%)

Query: 19  QQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           + L+VPS   + QN  TL +N              L  R  +  + ++ C + + L+   
Sbjct: 2   EALSVPSI--SLQNFSTLNNN--------------LLFRNHQILSTIDKCSSSKQLK--- 42

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            VHA M++T      +  ++L      +    L  AR +FD++ + N+ +W  +I AY+ 
Sbjct: 43  EVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYAS 102

Query: 137 KAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
            +  F++  +F+ +L + +  PN+FTF  V+ + +      +G  +H + IK +F   +Y
Sbjct: 103 SSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLY 162

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           + +SL+  Y   G +  A  +F+ +  +DVVS  ++IS +AQ    E+A+ELF K++ E 
Sbjct: 163 ILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMEREN 222

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           ++ N VT   VL+A +    L  G+ V S++ R  I   + L N+++DMY+KCGS+  ++
Sbjct: 223 VMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQ 282

Query: 316 RVFDNMSERTVISWNAMLVGYSK-------------------------------HGMGRE 344
           ++FD M ER V SW  ML GY+K                               +G  +E
Sbjct: 283 KLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKE 342

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + +FN ++     KPD VT ++ LS C+  G  D G    H  +  ++G          
Sbjct: 343 ALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIK-REGIVLNCHLISS 400

Query: 405 VVDMLGRAGRVGEALE 420
           +VDM  + G + +ALE
Sbjct: 401 LVDMYAKCGSLEKALE 416


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 357/589 (60%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M   GL        ++L AC        G+++H  MIK       Y+   L+  Y K
Sbjct: 291 LLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK 350

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L DARK+FD M  R+++   A+IS  S      EAL+LF  + +     N  T A V
Sbjct: 351 NHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAV 410

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A        +Q+H+L +K  F    +V + L+D Y K   + +A  VFE     D+
Sbjct: 411 LKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDI 470

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++CT++I+  +Q    E AI+LF ++  +G+  +    +S+L A + L+A   GKQVH+H
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++ +  S     N+L+  Y+KCGS+  +   F ++ ER V+SW+AM+ G ++HG G+  
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +ELF  M +E  + P+ +T  +VL  C+H G+ D     F+ + +   G +   EHY C+
Sbjct: 591 LELFGRMVDEG-INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF-GIDRTEEHYSCM 648

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++ +A+E + +MPF+  A+I G+LLGA RVH + ++G+   ++L  +EPE +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N YASAG W +V +VR+LMK+  + K+P  SWIE+   +HTF   D+SHPM +
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTK 768

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ AK+ +L     +AG+VP++   L+D+D  +KE +L  HSE+LA+ F L+ TP GAPI
Sbjct: 769 EIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPI 828

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+SK+  R++ +RD NRFHH  +GTCSCGDYW
Sbjct: 829 RVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 169/296 (57%), Gaps = 2/296 (0%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISA 133
           R G +VHA  + T +   V++   L+  Y     + DAR++F+E   ERN VSW  ++SA
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y +     +A+ +F  M+ S  +P EF F+ V+ +C G+   E G+Q+H+++++  ++  
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++  ++L+DMY K GR+  A  +FE +P+ DVVS  A+ISG    G D  AIEL  +++ 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G++ N  T +S+L A SG  A   G+Q+H  +++    S   +   L+DMY+K   L  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           +R+VFD M  R +I  NA++ G S  G   E + LF  +R+E  +  +  T  AVL
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG-LGVNRTTLAAVL 411



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 7/311 (2%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G  +HA ++K+        R  LI FY+KC     AR+ FDE+ +   VSW++++
Sbjct: 18  QALLPGAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLV 75

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +AYS       A+  F  M       NEF    VL     A    LG Q+H++ + + F 
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---RLGAQVHAMAMATGFG 132

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           S ++V ++L+ MY   G + +AR VF E   ER+ VS   ++S Y +     +AI++F +
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +   G+      ++ V+ A +G   +  G+QVH+ V+R      V   N+L+DMY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +  +F+ M +  V+SWNA++ G   +G     +EL   M+    V P+  T  ++L 
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV-PNVFTLSSILK 311

Query: 371 GCSHGGMEDRG 381
            CS  G  D G
Sbjct: 312 ACSGAGAFDLG 322



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T +  LT  +   AL  G  +H+ +L+    S    +N LI  YSKC     +RR FD +
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLK--SGSLASFRNHLISFYSKCRRPCCARRFFDEI 63

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +   +SW++++  YS +G+ R  ++ F+ MR E
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/536 (41%), Positives = 342/536 (63%), Gaps = 10/536 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   + +AR++FDE   ++V +WTAM+S Y Q     EA  LF +M     E N
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERN 311

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  +L         E+ K++  ++   N    +   ++++  YA+ G+I EA+ +F+
Sbjct: 312 EVSWNAMLAGYVQGERMEMAKELFDVMPCRN----VSTWNTMITGYAQCGKISEAKNLFD 367

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD VS  A+I+GY+Q G   EA+ LF +++ EG   N  +++S L+  + + AL  
Sbjct: 368 KMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H  +++    +   + N+L+ MY KCGS+  +  +F  M+ + ++SWN M+ GYS+
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G   +  F  M+ E  +KPD  T +AVLS CSH G+ D+G   F+ +     G  P 
Sbjct: 488 HGFGEVALRFFESMKREG-LKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ-DYGVMPN 545

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            +HY C+VD+LGRAG + +A   +KNMPFEP AAI G+LLGA RVH N ++ E    ++ 
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            +EPEN+G YV+LSNLYAS+GRW DV ++R  M++K V K PG SWIE+    HTF   D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP ++E+ A +++L ++ K+AGYV   S VL+DV+EE+KE+++  HSE+LA+ +G++ 
Sbjct: 666 EFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMR 725

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              G PIRVIKNLR+C DCHN  K+++++ GR + LRD NRFHH  +G+CSCGDYW
Sbjct: 726 VSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 42/382 (10%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y +  C+ DAR +FD M E+N VSW A++SAY Q +   EA  LF          +   +
Sbjct: 167 YAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF---------KSRENW 217

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFES----HIYVGSSLLDMYAKAGRIHEARGVFE 218
           A V  +C    GF   K+I  +  +  F+S     +   ++++  YA++G+I EAR +F+
Sbjct: 218 ALVSWNCLLG-GFVKKKKI--VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             P +DV + TA++SGY Q  + EEA ELF K+       N V++ ++      LA    
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAM------LAGYVQ 324

Query: 279 GKQVHSHVLRFEIPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G+++      F++     V   N++I  Y++CG ++ ++ +FD M +R  +SW AM+ GY
Sbjct: 325 GERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY 384

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           S+ G   E + LF  M  E   + +  ++ + LS C+     + G  +   +V  K G+E
Sbjct: 385 SQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLV--KGGYE 441

Query: 397 PEIEHYGCVVD-----MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN-VDIG 450
                 GC V      M  + G + EA +  K M  +   +    + G  R  +  V + 
Sbjct: 442 T-----GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496

Query: 451 EFVGQRLMEIEPENAGNYVILS 472
            F   +   ++P++A    +LS
Sbjct: 497 FFESMKREGLKPDDATMVAVLS 518



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 138/316 (43%), Gaps = 72/316 (22%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA----------------------- 129
           V+  T ++  Y +   + +AR++FD+M ERN VSW A                       
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340

Query: 130 --------MISAYSQKAHSFEALNLF-------------------------------IRM 150
                   MI+ Y+Q     EA NLF                               ++M
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            R     N  +F++ L++CA     ELGKQ+H  ++K  +E+  +VG++LL MY K G I
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EA  +F+ +  +D+VS   +I+GY++ G  E A+  F  ++ EG+  +  T  +VL+A 
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMS-ER 324
           S    +  G+Q    + +     Y V+ NS     ++D+  + G L  +  +  NM  E 
Sbjct: 521 SHTGLVDKGRQYFYTMTQ----DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576

Query: 325 TVISWNAMLVGYSKHG 340
               W  +L     HG
Sbjct: 577 DAAIWGTLLGASRVHG 592



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 143/315 (45%), Gaps = 58/315 (18%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           ARK+FDEM ER++VSW  MI  Y +  +  +A  LF  M   D              C+ 
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV-------------CSW 160

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                                     +++L  YA+ G + +AR VF+ +PE++ VS  A+
Sbjct: 161 --------------------------NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           +S Y Q    EEA  LF+  +   ++S    +  +L        +   +Q    +   ++
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVS----WNCLLGGFVKKKKIVEARQFFDSMNVRDV 250

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S+    N++I  Y++ G +  +R++FD    + V +W AM+ GY ++ M  E  ELF+ 
Sbjct: 251 VSW----NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M E N+     V++ A+L+G   G   +    +F +++ C++     +  +  ++    +
Sbjct: 307 MPERNE-----VSWNAMLAGYVQGERMEMAKELF-DVMPCRN-----VSTWNTMITGYAQ 355

Query: 412 AGRVGEALEFIKNMP 426
            G++ EA      MP
Sbjct: 356 CGKISEAKNLFDKMP 370



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  ++M   G  +    + + L+ C +   L  G+++H  ++K  Y    ++   L++ Y
Sbjct: 395 RLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 454

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + +A  +F EM  +++VSW  MI+ YS+      AL  F  M R   +P++ T  
Sbjct: 455 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514

Query: 164 TVLTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VL++C+     + G+Q  +++        +    + ++D+  +AG + +A  + + +P
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 147/361 (40%), Gaps = 63/361 (17%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +S I   +  +  Y + GR +EA  VF+ +P    VS   +ISGY + G      EL RK
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNG----EFELARK 116

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           L  E    + V++  ++        LG  +++   +   ++ S+    N+++  Y++ G 
Sbjct: 117 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW----NTMLSGYAQNGC 172

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R VFD M E+  +SWNA+L  Y ++    E   LF     EN        +  V  
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK--SREN--------WALVSW 222

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEP----EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            C  GG   +      +IV+ +  F+     ++  +  ++    ++G++ EA +     P
Sbjct: 223 NCLLGGFVKK-----KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESP 277

Query: 427 ----FEPTAAILGSLLGAC---------------RVHYNVDIGEFVGQRLMEIEPE---- 463
               F  TA + G +                    V +N  +  +V    ME+  E    
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDV 337

Query: 464 ----NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL----DQILHTFH 515
               N   +  +   YA  G+   ++  + L  +K   +DP  SW  +     Q  H+F 
Sbjct: 338 MPCRNVSTWNTMITGYAQCGK---ISEAKNLF-DKMPKRDP-VSWAAMIAGYSQSGHSFE 392

Query: 516 A 516
           A
Sbjct: 393 A 393


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/580 (40%), Positives = 359/580 (61%), Gaps = 18/580 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC---ECLSDARKMFDEM 119
           ++L+AC    + R GQ++H+  ++        +   L+  Y K    + L +AR++F+ M
Sbjct: 260 SMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 120 RERNVVSWTAMISAYSQK-AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
            + NV++WTA++S Y Q+ +   + + LF +ML     PN  T++++L +CA     + G
Sbjct: 320 PKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG 379

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +QIH+  +KSN      VG++L+ MYA++G I EAR  F+ L E+++VS +  + G  + 
Sbjct: 380 RQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGR- 438

Query: 239 GLDEEAIELFRKLQVEGM---ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
                    ++  Q+E M   IS + T+ S+++A + +  L  G+++H+  L+    S  
Sbjct: 439 ------SNTYQDYQIERMELGISTF-TFGSLISAAASVGMLTKGQRLHALSLKAGFGSDR 491

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + NSL+ MYS+CG L  + +VFD M++  VISW +M+ G +KHG     +ELF+ M   
Sbjct: 492 AIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAA 551

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             VKP+ VTY+AVLS CSH G+   G   F  ++    G  P +EHY C+VD+LGR+G V
Sbjct: 552 G-VKPNDVTYIAVLSACSHAGLVKEGKEHF-RMMQKHHGLIPRMEHYACMVDLLGRSGLV 609

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            +AL+FI  MP +  A +  +LLGAC+ H N+DIGE     ++++EP++   YV+LSNLY
Sbjct: 610 EDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLY 669

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A AG W+ V R+R LM++K + K+ G SW+ +D  +H F A D SHP  EE+  K++ L 
Sbjct: 670 AEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLI 729

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG-TPEGAPIRVIKNLRIC 594
            + K  GYVPD S VL+D+ +E KE  LL HSEK+A+ FGLI  T    PIR+ KNLR+C
Sbjct: 730 REIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVC 789

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VDCH+  K+VSK  GR++ LRD NRFH + +G CSCG+YW
Sbjct: 790 VDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 186/331 (56%), Gaps = 12/331 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  + K   L   R++FD + ER VV WT +I+ Y+Q  +S EA+ LF+ ML +  +P+
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPD 254

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---IHEARG 215
           ++T +++L++C     F LG+Q+HSL ++   ES   V   L+DMYAK+     +H AR 
Sbjct: 255 QYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNARE 314

Query: 216 VFECLPERDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
           VF  +P+ +V++ TA++SGY Q G  D + + LF K+  EG+  N++TY+S+L A + L 
Sbjct: 315 VFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG 374

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
               G+Q+H+H ++  +    V+ N+L+ MY++ GS+  +R  FD + E+ ++S++  L 
Sbjct: 375 DQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           G  +    ++    + + R E  +   + T+ +++S  +  GM  +G  +    +  K G
Sbjct: 435 GDGRSNTYQD----YQIERMELGIS--TFTFGSLISAAASVGMLTKGQRL--HALSLKAG 486

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           F  +      +V M  R G + +A +    M
Sbjct: 487 FGSDRAIGNSLVSMYSRCGYLVDACQVFDEM 517



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 190/377 (50%), Gaps = 15/377 (3%)

Query: 77  GQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMIS 132
           G+ +  H+++T         +   L+  Y+KC  ++ AR +FD M    R++VSWTAM S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKSNF- 190
             S+     EAL LF   L     PN FT      +C  +  F L G  +  L+ K  F 
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
            + + VG +L+DM+AK G +   R VF+ L ER VV  T +I+ YAQ G  +EA+ELF  
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-- 308
           +   G   +  T +S+L+A + L +   G+Q+HS  LR  + S   +   L+DMY+K   
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHN 305

Query: 309 -GSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYL 366
             SL  +R VF+ M +  V++W A+L GY + G    +V+ LF  M  E  ++P+ +TY 
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG-IRPNHITYS 364

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKNM 425
           ++L  C++ G +D G  +      C      ++   G  +V M   +G + EA      +
Sbjct: 365 SMLKACANLGDQDSGRQIH---THCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQL 421

Query: 426 PFEPTAAILGSLLGACR 442
             +   +  G+L G  R
Sbjct: 422 YEKNMVSFSGNLDGDGR 438


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/522 (42%), Positives = 333/522 (63%), Gaps = 2/522 (0%)

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           RK+FDEM ER+ VSW  +I   ++     EAL++   M R    P+ FT +TVL   A  
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + G  +H   IK+ F++ ++VGSSL+DMYA   ++  +  VF+   + D V   +++
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSML 243

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           +GYAQ G  EEA+ +FR++   G+    VT++S++ A   L+ L  GKQ+H++++R    
Sbjct: 244 AGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             + + +SLIDMY KCG++  +RRVF+ +    ++SW AM++GY+ HG   E   LF  M
Sbjct: 304 DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 363

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            E   VKP+ +T+LAVL+ CSH G+ D G   F+ + + + GF P +EH   + D LGRA
Sbjct: 364 -ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSN-QYGFVPSLEHCAALADTLGRA 421

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G + EA  FI  M  +PT+++  +LL ACRVH N  + E V +++ E+EP++ G++VILS
Sbjct: 422 GDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILS 481

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y+++GRW +  ++R+ M+ K + K+P  SWIE+   LH F A D+SHP  + +   + 
Sbjct: 482 NMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALN 541

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
             S +    GYVP+M  VL D++EEQK +VL GHSEKLA+ FG+I TP G  IRV+KNLR
Sbjct: 542 VYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLR 601

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +CVDCH   KF+SK+  R++ +RD NRFH   +G CSCGD+W
Sbjct: 602 VCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 43/355 (12%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           ++ G  VH + IK  +   V++ + LI  Y  C  +  + K+FD   + + V W +M++ 
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q     EAL +F RML++   P   TF++++ +        LGKQ+H+ +I++ F  +
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           I++ SSL+DMY K G +  AR VF  +   D+VS TA+I GYA  G   EA  LF ++++
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 365

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +  N++T+ +VLTA S    + +G +                 NS+ + Y    SL +
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYF---------------NSMSNQYGFVPSLEH 410

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
              + D +                  G   ++ E +N +  E K+KP S  +  +L  C 
Sbjct: 411 CAALADTL------------------GRAGDLDEAYNFI-SEMKIKPTSSVWSTLLRACR 451

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV---DMLGRAGRVGEALEFIKNM 425
                 +   +  E+   K  FE E +  G  V   +M   +GR  EA +  K+M
Sbjct: 452 ----VHKNTVLAEEVA--KKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSM 500



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 148/313 (47%), Gaps = 27/313 (8%)

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV---LTSCAGAFGFELGKQIH 182
           SW   I   + +     A++LF++M R+   P     A++   L SCAG     L   +H
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTLAASLH 72

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEA--------------------RGVFECLPE 222
           +L I+S   +  +  ++LL++  K    H                      R VF+ + E
Sbjct: 73  ALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD VS   +I G A+    +EA+ + R++  +G + +  T ++VL   +  A +  G  V
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H + ++    + V + +SLIDMY+ C  + YS +VFD+ S+   + WN+ML GY+++G  
Sbjct: 193 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 252

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E + +F  M +   V+P  VT+ +++    +  +   G  +   ++  +  F   I   
Sbjct: 253 EEALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR--FNDNIFIS 309

Query: 403 GCVVDMLGRAGRV 415
             ++DM  + G V
Sbjct: 310 SSLIDMYCKCGNV 322



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 4/185 (2%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L     NG + +AL     M   G+      + +L+ A  N   LR G+++HA++I+  +
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARF 302

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++ + LI  Y KC  +  AR++F+ ++  ++VSWTAMI  Y+    + EA  LF R
Sbjct: 303 NDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER 362

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M   + +PN  TF  VLT+C+ A   + G K  +S+  +  F   +   ++L D   +AG
Sbjct: 363 MELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAG 422

Query: 209 RIHEA 213
            + EA
Sbjct: 423 DLDEA 427


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/590 (38%), Positives = 360/590 (61%), Gaps = 4/590 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
             EM   G++       +L+ AC     L+ G+ +H +++       + + T  +  Y+K
Sbjct: 219 FFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSK 278

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              +  AR +F +M  RN+VSW AMIS   +     E+ +LF R++RS    +  T  ++
Sbjct: 279 MGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSL 338

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L  C+       GK +H   I+S FES++ + ++++D+Y+K G + +A  VF  + +R+V
Sbjct: 339 LQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNV 397

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++ TA++ G AQ G  E+A+ LF ++Q EG+ +N VT+ S++ + + L +L  G+ +H H
Sbjct: 398 ITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGH 457

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGRE 344
           + R      +V   +L+DMY+KCG +  + R+F + S  + V+ WN+M+ GY  HG G +
Sbjct: 458 LFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQ 517

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            V +++ M EE  +KP+  T+L++LS CSH  + ++G+++F+ + +      P  +HY C
Sbjct: 518 AVGIYHKMIEEG-LKPNQTTFLSLLSACSHSRLVEQGISLFNSM-ERDHNIRPIEKHYAC 575

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VD+L RAGR  EA   I+ MPF+P  A+L +LL  CR H N+++G     +L+ ++  N
Sbjct: 576 LVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN 635

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            G Y++LSN+YA A RW+ V  +R LM+ + + K PG S +E    +HTF A D SHP  
Sbjct: 636 PGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNW 695

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           EE+   ++ L    + +GYVPD SCVL DVDEE K ++L GHSE+LA+ FGL+ TP G+ 
Sbjct: 696 EEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSL 755

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IR+ KNLR+C DCH   K++SK+  R++ +RD NRFHH   G CSCGDYW
Sbjct: 756 IRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC +      G  + +  ++       ++ + +I F  K   + +A+++FD M  ++V
Sbjct: 137 LKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDV 196

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V W ++I  Y Q      A  LF  M  S  +P+  T  +++ +C G    +LGK +H  
Sbjct: 197 VCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGY 256

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           ++     + I V +S +DMY+K G I  AR VF  +P R++VS  A+ISG  + GL  E+
Sbjct: 257 VLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGES 316

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            +LF +L       +  T  S+L   S  A+L  GK +H   +R    S ++L  +++D+
Sbjct: 317 FDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDL 375

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCGSL  +  VF+ M +R VI+W AMLVG +++G   + + LF  M+EE  +  +SVT
Sbjct: 376 YSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEG-IAANSVT 434

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           +++++  C+H G   RG ++   +   + GF  +I +   +VDM  + G++  A     +
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLF--RLGFAFDIVNMTALVDMYAKCGKINLAERIFSH 492

Query: 425 MPFEPTAAILGSLLGACRVH 444
                   +  S++    +H
Sbjct: 493 GSISKDVVLWNSMITGYGMH 512



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 192/404 (47%), Gaps = 8/404 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +  HA +I        ++ T+L+  Y+    L  AR +FD+  +   +   AM+  Y Q 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               E L LF  M   + E +  +    L +CA +  +E+G +I S  ++   E + +VG
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           SS++    K G+I EA+ VF+ +P +DVV   +II GY Q G  + A +LF ++   G+ 
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            + +T  S++ A  G+  L  GK +H +VL   + + +++  S +DMYSK G +  +R V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTYLAVLSGCSHGG 376
           F  M  R ++SWNAM+ G  ++G+  E  +LF+ L+R       D  T +++L GCS   
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGF--DLTTIVSLLQGCS--- 343

Query: 377 MEDRGLAVFHEIVDCK-DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
            +   LA    +  C    FE  +     +VD+  + G + +A      M          
Sbjct: 344 -QTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTA 402

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            L+G  +  +  D      Q   E    N+  +V L +  A  G
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLG 446



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 102/197 (51%), Gaps = 11/197 (5%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  L  NG    AL    +M   G+      + +L+++C +  +L+ G+ +H H+ +  +
Sbjct: 404 LVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGF 463

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERNVVSWTAMISAYSQKAHSFEALNLFI 148
              +   T L+  Y KC  ++ A ++F      ++VV W +MI+ Y    H ++A+ ++ 
Sbjct: 464 AFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYH 523

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN----FESHIYVGSSLLDMY 204
           +M+    +PN+ TF ++L++C+ +   E G  + + + + +     E H    + L+D+ 
Sbjct: 524 KMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHY---ACLVDLL 580

Query: 205 AKAGRIHEARGVFECLP 221
           ++AGR  EA+ + E +P
Sbjct: 581 SRAGRFEEAQALIEKMP 597


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 367/603 (60%), Gaps = 6/603 (0%)

Query: 35  TLCSNGQLTKALIEMATL--GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
            LC   +    + E+  L  G  + +  YD L+NAC+  +++RG +R+  +M+   + P 
Sbjct: 107 VLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPD 166

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
            Y+R R+++ + KC  + DA ++FDEM  RN VSW  +IS Y    +  EA  LFI M  
Sbjct: 167 QYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMRE 226

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +    TFAT++ + AG      G+Q+HS  IK+     I+V  +L+DMY+K G + +
Sbjct: 227 EFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLED 286

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VF+ +P++ +V   +II+GYA  G  EEA++L+ +++  G+  ++ T++ ++   S 
Sbjct: 287 AHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSR 346

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA++   KQVH+ ++R      VV   +L+D YSK G +  +R VFD MS R +ISWNA+
Sbjct: 347 LASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNAL 406

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY  HG G E +++F  M  E  + P+ VT+LAVLS CS  G+ +RG  +F  +    
Sbjct: 407 IAGYGNHGHGEEAIDMFEKMLREG-MMPNHVTFLAVLSACSISGLFERGWEIFQSMTR-D 464

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              +P   H+ C++++LGR G + EA   I+  PF+PTA +  +LL ACRVH N+++G+F
Sbjct: 465 HKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKF 524

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             ++L  +EPE   NY++L N+Y S+G+ ++   V + +K K +   P  SWIE++   H
Sbjct: 525 AAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPH 584

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVP-DMSCVLYDVDEEQKEKVLLGHSEKLA 571
            F + D+ H   E++  KV +L +   + GYVP + + +L DVDE + EK+ + HSEKLA
Sbjct: 585 AFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENE-EKIRMYHSEKLA 643

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + +GL+ T E  P++++++ RIC DCH+  K ++ +  R++ +RD +RFHH  +G+CSCG
Sbjct: 644 IAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCG 703

Query: 632 DYW 634
           DYW
Sbjct: 704 DYW 706


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 350/565 (61%), Gaps = 37/565 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP- 157
           L+  Y +   +S+AR++FD M  R+VVSW  M+S Y+++    EA  LF      D  P 
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPV 252

Query: 158 -NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------------------ 192
            + FT+  V++  A     E  +++   + + N  S                        
Sbjct: 253 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 193 ---HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++   +++L  YA+AG + EA+ VF+ +P++D VS  A+++ Y+Q G  EE ++LF 
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFI 372

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G   N   +A VL+  + +AAL  G Q+H  ++R        + N+L+ MY KCG
Sbjct: 373 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++  +R  F+ M ER V+SWN M+ GY++HG G+E +E+F++MR     KPD +T + VL
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRT-TSTKPDDITLVGVL 491

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+ ++G++ F+ +     G   + EHY C++D+LGRAGR+ EA + +K+MPFEP
Sbjct: 492 AACSHSGLVEKGISYFYSM-HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            + + G+LLGA R+H N ++G    +++ E+EPENAG YV+LSN+YAS+G+W D  ++R 
Sbjct: 551 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRV 610

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +M+E+ V K PG SWIE+   +HTF A D  HP +E++ A ++ L ++ K+AGYV     
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+DV+EE+KE +L  HSEKLA+ +G++  P G PIRVIKNLR+C DCHN  K++S + G
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 730

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + LRD NRFHH   G+CSCGDYW
Sbjct: 731 RLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 189/448 (42%), Gaps = 74/448 (16%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V    + I  + +   ++DA ++F  M  R+  ++ AM++ YS        L L   +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGR----LPLAASL 91

Query: 151 LRSDTEPNEFTFATVL------TSCAGAFG-FELGKQIHSLIIKSNFESHIYVG------ 197
            R+   P+ +++ T+L      +S A A G F+      S+       SH   G      
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 198 --------------SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
                         + +L  Y + GR+ EARG+F    E DV+S  A++SGY Q G   E
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLI 302
           A ELF ++    ++S  +        +SG A    G  V +  L    P   V    +++
Sbjct: 212 ARELFDRMPGRDVVSWNIM-------VSGYAR--RGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             Y++ G L  +RRVFD M ER  +SWNAM+  Y +  M  E  ELFN+M   N      
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----V 317

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--FEPEIEHY---GCVVDMLGRAGRVGE 417
            ++  +L+G +  GM +   AVF + +  KD   +   +  Y   GC  + L     +G 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 418 ALEFIKNMPFE---PTAAILGSLLGACRVHYNV-----DIGEFVGQRLMEIEPENAGNYV 469
             E++    F     T A + +L    ++H  +      +G FVG  L+           
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA---------- 426

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVT 497
               +Y   G  ED     E M+E+ V 
Sbjct: 427 ----MYFKCGNMEDARNAFEEMEERDVV 450



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS   L +  IEM   G  +    +  +L+ C +   L  G ++H  +I+  Y    ++ 
Sbjct: 363 CSEETL-QLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DAR  F+EM ER+VVSW  MI+ Y++     EAL +F  M  + T+
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481

Query: 157 PNEFTFATVLTSCAGAFGFELG-----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           P++ T   VL +C+ +   E G        H   + +  E +    + ++D+  +AGR+ 
Sbjct: 482 PDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLA 537

Query: 212 EARGVFECLP 221
           EA  + + +P
Sbjct: 538 EAHDLMKDMP 547



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 143/333 (42%), Gaps = 48/333 (14%)

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            E  +   +  +  + +AGR+ +A  +F  +P R   +  A+++GY+  G    A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKC 308
            +       NY +Y ++L AL+  ++L   + +       E+P    V  N +I  ++  
Sbjct: 94  AIPRP---DNY-SYNTLLHALAVSSSLADARGLFD-----EMPVRDSVTYNVMISSHANH 144

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G ++ +R  FD   E+  +SWN ML  Y ++G   E   LFN     ++ + D +++ A+
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN-----SRTEWDVISWNAL 199

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-- 426
           +SG    G     ++   E+ D   G   ++  +  +V    R G + EA       P  
Sbjct: 200 MSGYVQWGK----MSEARELFDRMPG--RDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 427 --FEPTAAILG----SLLGACR-----------VHYNVDIGEFVGQRLMEIEPE------ 463
             F  TA + G     +L   R           V +N  +  ++ +R+M+   E      
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 464 --NAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             N  ++  +   YA AG  E+   V + M +K
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 350/565 (61%), Gaps = 37/565 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP- 157
           L+  Y +   +S+AR++FD M  R+VVSW  M+S Y+++    EA  LF      D  P 
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPV 252

Query: 158 -NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------------------ 192
            + FT+  V++  A     E  +++   + + N  S                        
Sbjct: 253 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 193 ---HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++   +++L  YA+AG + EA+ VF+ +P++D VS  A+++ Y+Q G  EE ++LF 
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFI 372

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G   N   +A VL+  + +AAL  G Q+H  ++R        + N+L+ MY KCG
Sbjct: 373 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++  +R  F+ M ER V+SWN M+ GY++HG G+E +E+F++MR     KPD +T + VL
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRT-TSTKPDDITLVGVL 491

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+ ++G++ F+ +     G   + EHY C++D+LGRAGR+ EA + +K+MPFEP
Sbjct: 492 AACSHSGLVEKGISYFYSM-HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            + + G+LLGA R+H N ++G    +++ E+EPENAG YV+LSN+YAS+G+W D  ++R 
Sbjct: 551 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRV 610

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +M+E+ V K PG SWIE+   +HTF A D  HP +E++ A ++ L ++ K+AGYV     
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+DV+EE+KE +L  HSEKLA+ +G++  P G PIRVIKNLR+C DCHN  K++S + G
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 730

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + LRD NRFHH   G+CSCGDYW
Sbjct: 731 RLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 188/448 (41%), Gaps = 74/448 (16%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V    + I  + +   ++DA ++F  M  R+  ++ AM++ YS        L L   +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGR----LPLAASL 91

Query: 151 LRSDTEPNEFTFATVL------TSCAGAFG-FELGKQIHSLIIKSNFESHIYVG------ 197
            R+   P+ +++ T+L      +S A A G F+      S+       SH   G      
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 198 --------------SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
                         + +L  Y + GR+ EARG+F    E D +S  A++SGY Q G   E
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSE 211

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLI 302
           A ELF ++    ++S  +        +SG A    G  V +  L    P   V    +++
Sbjct: 212 ARELFDRMPGRDVVSWNIM-------VSGYAR--RGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             Y++ G L  +RRVFD M ER  +SWNAM+  Y +  M  E  ELFN+M   N      
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----V 317

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--FEPEIEHY---GCVVDMLGRAGRVGE 417
            ++  +L+G +  GM +   AVF + +  KD   +   +  Y   GC  + L     +G 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 418 ALEFIKNMPFE---PTAAILGSLLGACRVHYNV-----DIGEFVGQRLMEIEPENAGNYV 469
             E++    F     T A + +L    ++H  +      +G FVG  L+           
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA---------- 426

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVT 497
               +Y   G  ED     E M+E+ V 
Sbjct: 427 ----MYFKCGNMEDARNAFEEMEERDVV 450



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS   L +  IEM   G  +    +  +L+ C +   L  G ++H  +I+  Y    ++ 
Sbjct: 363 CSEETL-QLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DAR  F+EM ER+VVSW  MI+ Y++     EAL +F  M  + T+
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481

Query: 157 PNEFTFATVLTSCAGAFGFELG-----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           P++ T   VL +C+ +   E G        H   + +  E +    + ++D+  +AGR+ 
Sbjct: 482 PDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLA 537

Query: 212 EARGVFECLP 221
           EA  + + +P
Sbjct: 538 EAHDLMKDMP 547



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 144/333 (43%), Gaps = 48/333 (14%)

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            E  +   +  +  + +AGR+ +A  +F  +P R   +  A+++GY+  G    A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKC 308
            +       NY +Y ++L AL+  ++L   + +       E+P    V  N +I  ++  
Sbjct: 94  AIPRP---DNY-SYNTLLHALAVSSSLADARGLFD-----EMPVRDSVTYNVMISSHANH 144

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G ++ +R  FD   E+  +SWN ML  Y ++G   E   LFN     ++ + D++++ A+
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN-----SRTEWDAISWNAL 199

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-- 426
           +SG    G     ++   E+ D   G   ++  +  +V    R G + EA       P  
Sbjct: 200 MSGYVQWGK----MSEARELFDRMPG--RDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 427 --FEPTAAILG----SLLGACR-----------VHYNVDIGEFVGQRLMEIEPE------ 463
             F  TA + G     +L   R           V +N  +  ++ +R+M+   E      
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 464 --NAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             N  ++  +   YA AG  E+   V + M +K
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/576 (39%), Positives = 363/576 (63%), Gaps = 8/576 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T++  C N + L   +++H+ ++K  +     + T ++  Y+KC  L DA  +F  M 
Sbjct: 305 YSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP 364

Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             +NVVSWTAMI    Q A    A  LF RM   + +PNEFT++TVLT+        L  
Sbjct: 365 GSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI----LLP 420

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIH+ IIK+N++    VG++LL  Y+K G   EA  +F+ +  +DVV+ +A++S Y+Q G
Sbjct: 421 QIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAG 480

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTAL-SGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             + A  +F K+ ++GM  N  T +S + A  S  A +  G+Q H+  +++     + + 
Sbjct: 481 DCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVG 540

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+ MY++ GS+  +R VF+  ++R ++SWN+M+ GY++HG  +E ++ F  M E   +
Sbjct: 541 SALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQM-ETVGI 599

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           + D  T+LAV+ GC+H G+   G   F  +V       P +EHY C+VD+  RAG++ E 
Sbjct: 600 EMDGATFLAVIVGCTHAGLVKEGQQYFDSMV-MDHNISPTMEHYSCMVDLYSRAGKLDET 658

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
           +  I+ MPF   A +  +LLGACRVH NV++G+   Q+L+ +EP+++  YV+LSN+YA+A
Sbjct: 659 MNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAA 718

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GRW++   VR+LM  K V K+ G SWI++   +H+F A D+SHP+ E++ AK+K ++ + 
Sbjct: 719 GRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRL 778

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K+ GY P+ S VL+D+ EEQKE +L+ HSE+LAL FGLI TP   P++++KNLR+C DCH
Sbjct: 779 KQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCH 838

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              K VS +  R++ +RD +RFHH   G CSCGD+W
Sbjct: 839 MVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 168/300 (56%), Gaps = 9/300 (3%)

Query: 77  GQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G+++H   +K  + R  V + T L+  Y KC  + D R +F+ M +RNVV+WT++++ Y 
Sbjct: 118 GEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYV 177

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     + + LF RM      PN FTF +VL++ A     +LG+++H+  +K    S ++
Sbjct: 178 QGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVF 237

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE---EAIELFRKLQ 252
           V +SL++MY+K G + EA+ VF  +  RD+VS   +++G   L L+E   EA++LF   +
Sbjct: 238 VCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAG---LLLNEHQLEALQLFHDSR 294

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
                 +  TY++V+   + L  L   +Q+HS VL+    S   +  +++D YSKCG L 
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 313 YSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
            +  +F  M   + V+SW AM+ G  ++        LF+ MRE+N VKP+  TY  VL+ 
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN-VKPNEFTYSTVLTA 413



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 192/385 (49%), Gaps = 18/385 (4%)

Query: 44  KALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           +A  ++  L   MR E        + ++L+A  +Q  +  G+RVHA  +K   R  V++ 
Sbjct: 180 RACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVC 239

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LI  Y+KC  + +A+ +F +M  R++VSW  +++      H  EAL LF     S  +
Sbjct: 240 NSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAK 299

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            ++ T++TV+  CA      L +Q+HS ++K  F S   V ++++D Y+K G + +A  +
Sbjct: 300 LSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNI 359

Query: 217 FECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           F  +P  ++VVS TA+I G  Q      A  LF +++ + +  N  TY++VLTA   +  
Sbjct: 360 FLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILL 419

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
                Q+H+ +++        +  +L+  YSK G+   +  +F  +  + V++W+AML  
Sbjct: 420 ----PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSC 475

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH--GGMEDRGLAVFHEIVDCKD 393
           YS+ G       +F  M  +  +KP+  T  + +  C+    G+ D+G   FH I   K 
Sbjct: 476 YSQAGDCDGATNVFIKMSMQG-MKPNEFTISSAIDACASPTAGI-DQGRQ-FHAI-SIKY 531

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEA 418
            ++  I     +V M  R G +  A
Sbjct: 532 RYQDAICVGSALVTMYARKGSIDSA 556


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 359/594 (60%), Gaps = 39/594 (6%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM--FDEMRERNVVSWTAMISAYS 135
           ++VHAH+I+       Y+ T+LI    K +    +  +  F ++   N   WTAMI  Y+
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-LIIKSNFESHI 194
            +    E+ N + RM R    P  FTF+ +  +C  A   +LGKQ+H+  I+   F S +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 195 YVGSSLLDMY-------------------------------AKAGRIHEARGVFECLPER 223
           YVG+S++D+Y                               AK G +  A G+F+ LP +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSK 238

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D+V+ TA+++GYAQ G  +EA+E F+K+Q  GM ++ VT A V++A + L A+ H   + 
Sbjct: 239 DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIR 298

Query: 284 SHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
               R  F     VV+ ++LIDMYSKCGS   + +VF+ M ER V S+++M++GY+ HG 
Sbjct: 299 DIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGR 358

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
               ++LF+ M +  +++P+ VT++ +LS CSH G+ ++G  +F ++ +   G  P  +H
Sbjct: 359 AHSALQLFHDMLK-TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKM-EKFFGVAPSPDH 416

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           Y C+VD+LGRAG + EAL+ +K MP EP   + G+LLGACR+H N DI +     L ++E
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE-LDQILHTFHASDRS 520
           P   GNY++LSN+YASAGRWE+V+++R++++EK   K+PG SW E  +  +H F A D +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           HP   E+   +KQL  + +  GY P++    YD+ +++KE++L+ HSEKLAL +GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G  I+++KN+RIC DCHN     S++ GR++ +RD  RFHH   GTCSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/587 (38%), Positives = 369/587 (62%), Gaps = 9/587 (1%)

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           AT+G +M    Y T++  C N + L   +++H+ ++K  +     + T L   Y+KC  L
Sbjct: 295 ATMG-KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGEL 353

Query: 110 SDARKMFD-EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +DA  +F      RNVVSWTA+IS   Q      A+ LF RM      PNEFT++ +L +
Sbjct: 354 ADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                   L  QIH+ +IK+N++   +VG++LL  Y+K G   +A  +F+ + ++DVV+ 
Sbjct: 414 SLSI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAW 469

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVL 287
           +A++S +AQ G  E A  LF K+ ++G+  N  T +SV+ A +  +A +  G+Q H+  +
Sbjct: 470 SAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISI 529

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++     + + ++L+ MYS+ G++  ++ VF+  ++R ++SWN+M+ GY++HG   + +E
Sbjct: 530 KYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIE 589

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F  M E + ++ D VT+LAV+ GC+H G+   G   F  +V       P +EHY C+VD
Sbjct: 590 TFRQM-EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR-DHKINPTMEHYACMVD 647

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +  RAG++ E +  I++MPF   A +  +LLGACRVH NV++G+F   +L+ +EP ++  
Sbjct: 648 LYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSST 707

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA+AG+W++   VR+LM  + V K+ G SWI++   +H+F A D+SHPM +++
Sbjct: 708 YVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQI 767

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             K+K +  + K+ GY P+ S VL+D+ E+QKE +L+ HSE+LAL FGLI TP G P+++
Sbjct: 768 YKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQI 827

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +KNLR+C DCH   K VS +  R++ +RD +RFHH   G CSCGD+W
Sbjct: 828 VKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 64  LLNAC--VNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +L AC  V  R L  G+++H   +K  + R  V   T L+  Y KC  + +  ++F+ M 
Sbjct: 105 VLKACRSVPDRVL--GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMP 162

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++NVV+WT++++  +      E + LF RM      PN FTFA+VL++ A     +LG++
Sbjct: 163 KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR 222

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+  +K    S ++V +SL++MYAK G + +A+ VF  +  RD+VS   +++G      
Sbjct: 223 VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNEC 282

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           + EA++LF + +         TYA+V+   + L  L   +Q+HS VL+        +  +
Sbjct: 283 ELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTA 342

Query: 301 LIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           L D YSKCG L  +  +F      R V+SW A++ G  ++G     V LF+ MRE+ +V 
Sbjct: 343 LADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRED-RVM 401

Query: 360 PDSVTYLAVL 369
           P+  TY A+L
Sbjct: 402 PNEFTYSAML 411



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 198/398 (49%), Gaps = 23/398 (5%)

Query: 32  NLKTLCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHM 84
           +L T C++ Q+     E+  L   MR E        + ++L+A  +Q  L  GQRVHA  
Sbjct: 171 SLLTGCAHAQMHS---EVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
           +K   R  V++   L+  Y KC  + DA+ +F+ M  R++VSW  +++         EAL
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEAL 287

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            LF     +  +  + T+ATV+  CA      L +Q+HS ++K  F     V ++L D Y
Sbjct: 288 QLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAY 347

Query: 205 AKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           +K G + +A  +F      R+VVS TAIISG  Q G    A+ LF +++ + ++ N  TY
Sbjct: 348 SKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY 407

Query: 264 ASVLTA-LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           +++L A LS L       Q+H+ V++        +  +L+  YSK GS   +  +F  + 
Sbjct: 408 SAMLKASLSILP-----PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIE 462

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS--HGGMEDR 380
           ++ V++W+AML  +++ G       LFN M  +  +KP+  T  +V+  C+    G+ D+
Sbjct: 463 QKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG-IKPNEFTISSVIDACACPSAGV-DQ 520

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           G   FH I   K  +   I     +V M  R G +  A
Sbjct: 521 GRQ-FHAI-SIKYRYHDAICVSSALVSMYSRKGNIDSA 556



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 179/359 (49%), Gaps = 12/359 (3%)

Query: 108 CLSD---ARKMFDEMRERNV-VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           CL D   AR   DE+  R+  V    ++  Y+++    E L+ F    R     +  T +
Sbjct: 44  CLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLS 103

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            VL +C       LG+Q+H L +K   +   +  G+SL+DMY K G + E   VFE +P+
Sbjct: 104 CVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPK 163

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           ++VV+ T++++G A   +  E + LF +++ EG+  N  T+ASVL+A++   AL  G++V
Sbjct: 164 KNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRV 223

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H+  ++F   S V + NSL++MY+KCG +  ++ VF+ M  R ++SWN ++ G   +   
Sbjct: 224 HAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECE 283

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIE 400
            E ++LF+  R     K    TY  V+  C++     + LA+  ++  C  K GF     
Sbjct: 284 LEALQLFHESRATMG-KMTQSTYATVIKLCAN----LKQLALARQLHSCVLKHGFHLTGN 338

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
               + D   + G + +AL                +++  C  + ++ +   +  R+ E
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 132/348 (37%), Gaps = 78/348 (22%)

Query: 213 ARGVFECLPERDV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           AR   + +P RD  V    ++  YA+ G+  E ++ F   +  G++ +  T + VL A  
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 272 GLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            +     G+Q+H   ++       V    SL+DMY KCGS+     VF+ M ++ V    
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNV---- 166

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                                           VT+ ++L+GC+H  M    +A+F  +  
Sbjct: 167 --------------------------------VTWTSLLTGCAHAQMHSEVMALFFRMR- 193

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             +G  P    +  V+  +   G    AL+             LG  + A  V +     
Sbjct: 194 -AEGIWPNPFTFASVLSAVASQG----ALD-------------LGQRVHAQSVKFGCRSS 235

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK-AVTKDPGRSWIELDQ 509
            FV   LM              N+YA  G  ED   V   M+ +  V+ +   + ++L++
Sbjct: 236 VFVCNSLM--------------NMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNE 281

Query: 510 I----LHTFHASDRSH-PMREELSAKVKQLSVKFKEAGYVPDM-SCVL 551
                L  FH S  +   M +   A V +L    K+      + SCVL
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVL 329


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/661 (36%), Positives = 361/661 (54%), Gaps = 68/661 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  K L++M   G          +L++C   +    G++VH+ ++K      V +   +
Sbjct: 40  GEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSV 99

Query: 100 IVFYNKCEC-------------------------------LSDARKMFDEMRERNVVSWT 128
           +  Y KC                                 +  A  +F+ M +R++VSW 
Sbjct: 100 LNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWN 159

Query: 129 AMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           AMI+ Y+Q     +AL LF RML  S   P+EFT  +VL++CA      +GKQ+H+ I++
Sbjct: 160 AMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILR 219

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGV------------------------------- 216
           +    +  V ++L+  YAK+G +  AR +                               
Sbjct: 220 TEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 279

Query: 217 --FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
             F  +  RDVV+ TA+I GY Q G ++EAI+LFR +   G   N  T A+VL+  + LA
Sbjct: 280 EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 339

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAML 333
            L +GKQ+H   +R  +     + N++I MY++ GS  ++RR+FD +  R   I+W +M+
Sbjct: 340 CLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 399

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           V  ++HG G E V LF  M     V+PD +TY+ VLS CSH G  + G   + +I + + 
Sbjct: 400 VALAQHGQGEEAVGLFEEMLRAG-VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN-EH 457

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
              PE+ HY C+VD+L RAG   EA EFI+ MP EP A   GSLL ACRVH N ++ E  
Sbjct: 458 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 517

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L+ I+P N+G Y  ++N+Y++ GRW D  R+ +  KEKAV K+ G SW  +   +H 
Sbjct: 518 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 577

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D  HP R+ + A   ++  + K AG+VPD+  VL+DVD+E KE++L  HSEKLA+ 
Sbjct: 578 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIA 637

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TPE   +RV+KNLR+C DCH   K +SKV  R++ +RD  RFHH  +G CSC DY
Sbjct: 638 FGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDY 697

Query: 634 W 634
           W
Sbjct: 698 W 698



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 164/330 (49%), Gaps = 41/330 (12%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            + K   L+DAR +F EM ER+ VSWT M+   ++     EA+   + M      P +FT
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA-------------- 207
              VL+SCA      +G+++HS ++K    S + V +S+L+MY K               
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 208 -----------------GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF-R 249
                            GR+  A  +FE +P+R +VS  A+I+GY Q GLD +A++LF R
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
            L    M  +  T  SVL+A + L  +  GKQVH+++LR E+     + N+LI  Y+K G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 310 SLTYSRRVFDNMSER--TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           S+  +RR+ D   E    VIS+ A+L GY K G      E+F +M        D V + A
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR-----DVVAWTA 295

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++ G    G  D  + +F  ++ C  G EP
Sbjct: 296 MIVGYEQNGRNDEAIDLFRSMITC--GPEP 323



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 33/247 (13%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           M+AK+GR+ +ARGVF  +PERD VS T ++ G  + G   EAI+    +  +G      T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS------------ 310
             +VL++ +   A   G++VHS V++  + S V + NS+++MY KCG             
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 311 -------------------LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
                              +  +  +F++M +R+++SWNAM+ GY+++G+  + ++LF+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M  E+ + PD  T  +VLS C++ G    G  V   I+  +  +  ++ +   ++    +
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAK 238

Query: 412 AGRVGEA 418
           +G V  A
Sbjct: 239 SGSVENA 245


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/661 (36%), Positives = 361/661 (54%), Gaps = 68/661 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  K L++M   G          +L++C   +    G++VH+ ++K      V +   +
Sbjct: 146 GEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSV 205

Query: 100 IVFYNKCEC-------------------------------LSDARKMFDEMRERNVVSWT 128
           +  Y KC                                 +  A  +F+ M +R++VSW 
Sbjct: 206 LNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWN 265

Query: 129 AMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           AMI+ Y+Q     +AL LF RML  S   P+EFT  +VL++CA      +GKQ+H+ I++
Sbjct: 266 AMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILR 325

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGV------------------------------- 216
           +    +  V ++L+  YAK+G +  AR +                               
Sbjct: 326 TEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 385

Query: 217 --FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
             F  +  RDVV+ TA+I GY Q G ++EAI+LFR +   G   N  T A+VL+  + LA
Sbjct: 386 EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 445

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAML 333
            L +GKQ+H   +R  +     + N++I MY++ GS  ++RR+FD +  R   I+W +M+
Sbjct: 446 CLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           V  ++HG G E V LF  M     V+PD +TY+ VLS CSH G  + G   + +I + + 
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAG-VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN-EH 563

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
              PE+ HY C+VD+L RAG   EA EFI+ MP EP A   GSLL ACRVH N ++ E  
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L+ I+P N+G Y  ++N+Y++ GRW D  R+ +  KEKAV K+ G SW  +   +H 
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D  HP R+ + A   ++  + K AG+VPD+  VL+DVD+E KE++L  HSEKLA+ 
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIA 743

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TPE   +RV+KNLR+C DCH   K +SKV  R++ +RD  RFHH  +G CSC DY
Sbjct: 744 FGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDY 803

Query: 634 W 634
           W
Sbjct: 804 W 804



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 169/342 (49%), Gaps = 41/342 (11%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           R  V+    L+  + K   L+DAR +F EM ER+ VSWT M+   ++     EA+   + 
Sbjct: 95  RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA-- 207
           M      P +FT   VL+SCA      +G+++HS ++K    S + V +S+L+MY K   
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 208 -----------------------------GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
                                        GR+  A  +FE +P+R +VS  A+I+GY Q 
Sbjct: 215 SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQN 274

Query: 239 GLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           GLD +A++LF R L    M  +  T  SVL+A + L  +  GKQVH+++LR E+     +
Sbjct: 275 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 334

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSER--TVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            N+LI  Y+K GS+  +RR+ D   E    VIS+ A+L GY K G      E+F +M   
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
                D V + A++ G    G  D  + +F  ++ C  G EP
Sbjct: 395 -----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITC--GPEP 429



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 134/257 (52%), Gaps = 33/257 (12%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +++  +SLL M+AK+GR+ +ARGVF  +PERD VS T ++ G  + G   EAI+    + 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-- 310
            +G      T  +VL++ +   A   G++VHS V++  + S V + NS+++MY KCG   
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 311 -----------------------------LTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
                                        +  +  +F++M +R+++SWNAM+ GY+++G+
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             + ++LF+ M  E+ + PD  T  +VLS C++ G    G  V   I+  +  +  ++ +
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 402 YGCVVDMLGRAGRVGEA 418
              ++    ++G V  A
Sbjct: 337 --ALISTYAKSGSVENA 351


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/667 (35%), Positives = 372/667 (55%), Gaps = 95/667 (14%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE-- 118
           Y  ++ AC  +    GG+ +H H++K  +   VY++  LI  Y  C  + DARK+FDE  
Sbjct: 144 YPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP 203

Query: 119 -----------------------------MRERNV------------------------- 124
                                        M +RN+                         
Sbjct: 204 VLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNE 263

Query: 125 ------VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
                 VSW+A+IS Y Q     EAL +FI M  +    +E    +VL++CA     + G
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYA-------------------------------KA 207
           K IH L+I+   ES++ + ++L+ MY+                               K 
Sbjct: 324 KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKC 383

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G + +AR +F+ +PE+D+VS +A+ISGYAQ     E + LF ++Q+  +  +     SV+
Sbjct: 384 GSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVI 443

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           +A + LAAL  GK VH+++ +  +   V+L  +L+DMY KCG +  +  VF+ M E+ V 
Sbjct: 444 SACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVS 503

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWNA+++G + +G+    +++F+ M+  N V P+ +T++ VL  C H G+ D G   F  
Sbjct: 504 SWNALIIGLAVNGLVERSLDMFSEMK-NNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 562

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +++ K G EP ++HYGC+VD+LGRAG + EA + I++MP  P  A  G+LLGAC+ H + 
Sbjct: 563 MIE-KHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++GE VG++L+E++P++ G +V+LSN++AS G WEDV  VR +MK++ V K PG S IE 
Sbjct: 622 EMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEA 681

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           + ++H F A D++HP   ++   + +++ + K  GY PD + V  D+DEE+KE  L  HS
Sbjct: 682 NGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHS 741

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLA+ FGL+      PIR++KNLRIC DCH  AK +SK Y R++ +RD++RFH+  EG 
Sbjct: 742 EKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGA 801

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 802 CSCMDYW 808



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 148/562 (26%), Positives = 243/562 (43%), Gaps = 139/562 (24%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEM 119
           +T L+ C N   L+   R+ + MI T +    +  +RL+ F        L  + ++FD +
Sbjct: 45  ETHLHNCHN---LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRI 101

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              N   W  M+ AY Q   + +AL L+  M++++  P+ +T+  V+ +CA       GK
Sbjct: 102 ENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGK 161

Query: 180 QIHSLIIKSNFESHIYVGSSLLDM-------------------------------YAKAG 208
           +IH  ++K  F+S +YV ++L++M                               Y K G
Sbjct: 162 EIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKG 221

Query: 209 RIHEARGVFECLPER-------------------------------DVVSCTAIISGYAQ 237
            + EA+ +F+ +P+R                               D+VS +A+ISGY Q
Sbjct: 222 DVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQ 281

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G+ EEA+ +F ++   GM  + V   SVL+A + L+ +  GK +H  V+R  I SYV L
Sbjct: 282 NGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNL 341

Query: 298 QNSLIDMYS-------------------------------KCGSLTYSRRVFDNMSERTV 326
           QN+LI MYS                               KCGS+  +R +FD M E+ +
Sbjct: 342 QNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDI 401

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           +SW+A++ GY++H    E + LF+ M +  +++PD    ++V+S C+H    D+G  V  
Sbjct: 402 VSWSAVISGYAQHDCFSETLALFHEM-QLGQIRPDETILVSVISACTHLAALDQGKWVHA 460

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF------------------------- 421
            I   K+G +  +     ++DM  + G V  ALE                          
Sbjct: 461 YIR--KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLV 518

Query: 422 ---------IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYV 469
                    +KN    P       +LGACR    VD G      ++E   IEP N  +Y 
Sbjct: 519 ERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP-NVKHYG 577

Query: 470 ILSNLYASAGRWEDVTRVRELM 491
            + +L   AG   +  ++ E M
Sbjct: 578 CMVDLLGRAGLLNEAEKLIESM 599



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 55/386 (14%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL   IEM   G+ +      ++L+AC +   ++ G+ +H  +I+      V L
Sbjct: 282 NGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNL 341

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM------------------------- 130
           +  LI  Y+    + DA+K+F+     + +SW +M                         
Sbjct: 342 QNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDI 401

Query: 131 ------ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
                 IS Y+Q     E L LF  M      P+E    +V+++C      + GK +H+ 
Sbjct: 402 VSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAY 461

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           I K+  + ++ +G++LLDMY K G +  A  VF  + E+ V S  A+I G A  GL E +
Sbjct: 462 IRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS 521

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QVHSHVLRFEIPSYVVLQNSLID 303
           +++F +++  G+I N +T+  VL A   +  +  G+    S + +  I   V     ++D
Sbjct: 522 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581

Query: 304 MYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG-------MGREVVELFNLMREE 355
           +  + G L  + ++ ++M     V +W A+L    KHG       +GR+++EL       
Sbjct: 582 LLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL------- 634

Query: 356 NKVKPDSVTYLAVLSG--CSHGGMED 379
              +PD   +  +LS    S G  ED
Sbjct: 635 ---QPDHDGFHVLLSNIFASKGDWED 657


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 368/620 (59%), Gaps = 21/620 (3%)

Query: 28  PNP--QNLKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHA 82
           P+P       LC +G  T AL    ++A  G+         L+  CV   T+  G+ +H 
Sbjct: 31  PHPLVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHR 90

Query: 83  HMIKTCYRP-------PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           H +  C           +++   L+  Y K   L DA ++F  M +RNVVSWT +++A +
Sbjct: 91  H-VSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA 149

Query: 136 QK-AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
                  EAL   + M R     N +TF++VL +C G  G  +   +H+ IIK   +S +
Sbjct: 150 NAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGAC-GTPG--VLAAMHADIIKVGLDSDV 206

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +V SSL+D Y K G +   RGVF+ +   D+V   +II+G+AQ G    A+ELF +++  
Sbjct: 207 FVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKES 266

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G ++N  T  SVL A +G+  L  G+QVH+HVL+++    ++L N+L+DMY KCG L  +
Sbjct: 267 GFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYD--RDLILHNALLDMYCKCGCLLDA 324

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
             +F  M +R VISW+ M+ G +++G   E +++F+LM+ E    P+++T + VL  CSH
Sbjct: 325 DALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPT-PNNITMVGVLFACSH 383

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ + G   F  + D   G +PE EH  C+VD+LGRAG++ EA++FI  M FEP + I 
Sbjct: 384 AGLVEDGWHYFRSM-DKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIW 442

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            +LLGACR+H N  +  +    ++++EPE+ G  ++LSN+YA   +W +  +  + M+++
Sbjct: 443 RTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQ 502

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            V K+PGRSWIEL +++H F A + SHP  + +  ++ +L  + K+ GYVP    VL D+
Sbjct: 503 GVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDL 562

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
             EQKE +L  HSEKLA+ FG + + EG P+R++KNLRIC DCH FAK VSK  G+ + +
Sbjct: 563 GTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIII 622

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD  RFHH   G CSCGDYW
Sbjct: 623 RDPVRFHHFQHGVCSCGDYW 642


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/656 (36%), Positives = 387/656 (58%), Gaps = 37/656 (5%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIE-MATLGLEMRFEEYDTLLNACV 69
           FS+++F +       F    +   TLCS G + +A    ++ +  E R   +  LL AC+
Sbjct: 24  FSTISF-KTHFQNGRFSDGNEQFATLCSKGHIREAFESFLSEIWAEPRL--FSNLLQACI 80

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK---------------------CEC 108
             +++  G+++H+ +  +      ++   L+  Y+K                     C  
Sbjct: 81  PLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNI 140

Query: 109 ----------LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
                     L  A+ +FDEM +RNV +W AM++  ++   + EAL LF RM      P+
Sbjct: 141 MIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPD 200

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E++  +VL  CA       G+Q+H+ ++K  FE ++ VG SL  MY KAG +H+   V  
Sbjct: 201 EYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVIN 260

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+  +V+   ++SG AQ G  E  ++ +  +++ G   + +T+ SV+++ S LA L  
Sbjct: 261 WMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQ 320

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+H+  ++    S V + +SL+ MYS+CG L  S + F    ER V+ W++M+  Y  
Sbjct: 321 GKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGF 380

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G E ++LFN M +EN +  + +T+L++L  CSH G++D+GL +F  +V  K G +  
Sbjct: 381 HGQGEEAIKLFNEMEQEN-LPGNEITFLSLLYACSHCGLKDKGLGLFDMMVK-KYGLKAR 438

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           ++HY C+VD+LGR+G + EA   I++MP +  A I  +LL AC++H N +I   V   ++
Sbjct: 439 LQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVL 498

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            I+P+++ +YV+L+N+Y+SA RW++V+ VR  MK+K V K+PG SW+E+   +H FH  D
Sbjct: 499 RIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGD 558

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP   E++  +++L+ + K  GYVPD S VL+D+D E+KE++L  HSEKLA+ F L+ 
Sbjct: 559 ECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMN 618

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           TPEG PIRV+KNLR+C DCH   K++S++   ++ +RD +RFHH   GTCSCGDYW
Sbjct: 619 TPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 359/594 (60%), Gaps = 39/594 (6%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM--FDEMRERNVVSWTAMISAYS 135
           ++VHAH+I+       Y+ T+LI    K +    +  +  F ++   N   WTAMI  Y+
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-LIIKSNFESHI 194
            +    E+ N + RM R    P  FTF+ +  +C  A   +LGKQ+H+  I+   F S +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 195 YVGSSLLDMY-------------------------------AKAGRIHEARGVFECLPER 223
           YVG+S++D+Y                               AK G +  A G+F+ LP +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLK 238

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D+V+ TA+++GYAQ G  +EA+E F+K+Q  GM ++ VT A V++A + L A+ H   + 
Sbjct: 239 DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIR 298

Query: 284 SHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
               R  F     VV+ ++LIDMYSKCGS   + +VF+ M ER V S+++M++GY+ HG 
Sbjct: 299 DIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGR 358

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
               ++LF+ M +  +++P+ VT++ +LS CSH G+ ++G  +F ++ +   G  P  +H
Sbjct: 359 AHSALQLFHDMLK-TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKM-EKFFGVAPSPDH 416

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           Y C+VD+LGRAG + EAL+ +K MP EP   + G+LLGACR+H N DI +     L ++E
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE-LDQILHTFHASDRS 520
           P   GNY++LSN+YASAGRWE+V+++R++++EK   K+PG SW E  +  +H F A D +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           HP   E+   +KQL  + +  GY P++    YD+ +++KE++L+ HSEKLAL +GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G  I+++KN+RIC DCHN     S++ GR++ +RD  RFHH   GTCSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/648 (36%), Positives = 369/648 (56%), Gaps = 42/648 (6%)

Query: 26  FPPN---PQNLKTLCSNG---QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79
           FPP       ++   S+G   Q   + I M   GL      + ++L +C     L  G+ 
Sbjct: 68  FPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGES 127

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA--------------------------- 112
           +H ++I+      +Y    L+  Y+K   L ++                           
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 113 -----RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
                RK+F+ M E+++VSW  +I+  ++     E L +   M  ++ +P+ FT ++VL 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
             A       GK+IH   I+   ++ IYV SSL+DMYAK  R+ ++  VF  L ERD +S
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS 307

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             +II+G  Q GL +E +  FR++ +  +     +++S++ A + L  L  GKQ+H ++ 
Sbjct: 308 WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 367

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R      + + +SL+DMY+KCG++  ++++FD M  R ++SW AM++G + HG   + +E
Sbjct: 368 RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIE 427

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVV 406
           LF  M  E  +KP+ V ++AVL+ CSHGG+ D     F+ +   +D G  P +EHY  V 
Sbjct: 428 LFEQMETEG-IKPNHVAFMAVLTACSHGGLVDEAWKYFNSMT--RDFGIAPGVEHYAAVS 484

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAGR+ EA +FI  M   PT +I  +LL ACRVH N+D+ E V  R++E++P N G
Sbjct: 485 DLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTG 544

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            Y++L+N+Y++A RW++  + R  M+   + K P  SWIE+   ++ F A D SHP  E+
Sbjct: 545 AYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEK 604

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +   ++ L    ++ GYVPD S V +DV+EEQK+ ++  HSE+LA+ FG+I TP G  IR
Sbjct: 605 IREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIR 664

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V KNLR+C DCH   KF+SK+ GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 665 VTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 182/375 (48%), Gaps = 36/375 (9%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y+    L D+ ++F+ +     ++W ++I  Y+      ++L  FI ML S   P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-------------AG 208
           F +VL SCA      LG+ +H  II+   +  +Y G++L++MY+K             AG
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 209 RIHE-------------------ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            + +                    R +FE +PE+D+VS   II+G A+ GL EE + + R
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++    +  +  T +SVL  ++    +  GK++H   +R  + + + + +SLIDMY+KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  S RVF  ++ER  ISWN+++ G  ++G+  E +  F  M    K+KP S ++ +++
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMA-KIKPKSYSFSSIM 347

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             C+H      G  +   I   ++GF+  I     +VDM  + G +  A +    M    
Sbjct: 348 PACAHLTTLHLGKQLHGYIT--RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 430 TAAILGSLLGACRVH 444
             +    ++G C +H
Sbjct: 406 MVSWTAMIMG-CALH 419


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/663 (37%), Positives = 384/663 (57%), Gaps = 45/663 (6%)

Query: 12  SSLTFTQQQLTVPSFPPNPQN------LKTLCSNGQLTKALI---EMATLGLEMRFEEYD 62
           SSL +    L+V +  P P+       L+ L  + +  K L+    M T GL +    + 
Sbjct: 70  SSLDYA---LSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFP 126

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL A    ++L  G  +H    K  +    +++T L+  Y  C  +++AR MFD+M  R
Sbjct: 127 PLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHR 186

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VV+W+ MI  Y Q     +AL LF  M   + EP+E   +TVL++C  A     GK IH
Sbjct: 187 DVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIH 246

Query: 183 SLIIKSNFESHIYVGSSLLDMYA-------------------------------KAGRIH 211
             I+++N     ++ S+L+ MYA                               K G+I 
Sbjct: 247 DFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIE 306

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR VF  + ++D+V  +A+ISGYA+    +EA+ LF ++Q  G+  + VT  SV+TA +
Sbjct: 307 NARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACA 366

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL   K +H  V +      + + N+LI+MY+KCGSL  +RR+FD M  + VISW  
Sbjct: 367 HLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+  ++ HG     +  F+ M +EN ++P+ +T++ VL  CSH G+ + G  +F+ +++ 
Sbjct: 427 MISAFAMHGDAGSALRFFHQMEDEN-IEPNGITFVGVLYACSHAGLVEEGRKIFYSMIN- 484

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           +    P+  HYGC+VD+ GRA  + EALE ++ MP  P   I GSL+ ACRVH  +++GE
Sbjct: 485 EHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGE 544

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           F  +RL+E++P++ G +V LSN+YA A RWEDV +VR+LMK K ++K+ G S  EL+  +
Sbjct: 545 FAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEI 604

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F  +DRSH   +E+  K+ ++  K K  GY P+   +L D++EE+K++V+L HSEKLA
Sbjct: 605 HEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLA 664

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           L +GL+    G+ IR+IKNLR+C DCH F K  SKVY R++ +RD+ RFHH  +G CSC 
Sbjct: 665 LCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCK 724

Query: 632 DYW 634
           DYW
Sbjct: 725 DYW 727



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 125/263 (47%), Gaps = 4/263 (1%)

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL-LDMYAKAGRIHEARGVFECLPE 222
           T+ ++ + A      KQ+H+ I++S  +    +   L +   A +  +  A  VF  +P+
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPK 84

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
            +   C   +   ++    E+ + ++ +++ +G+  +  ++  +L ALS + +L  G ++
Sbjct: 85  PETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEI 144

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H    +    S   +Q  L+ MY+ CG +  +R +FD M  R V++W+ M+ GY + G+ 
Sbjct: 145 HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            + + LF  M+  N V+PD +    VLS C   G    G  +   I++     +P ++  
Sbjct: 205 NDALLLFEEMKNYN-VEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ-- 261

Query: 403 GCVVDMLGRAGRVGEALEFIKNM 425
             +V M    G +  AL   + M
Sbjct: 262 SALVTMYASCGSMDLALNLFEKM 284



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 55/277 (19%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           ++ ++ +ALS   +L H KQVH+ +LR ++  S  +L   +I   +   SL Y+  VF+ 
Sbjct: 22  SHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNL 81

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-----G 375
           + +      N  L   S+     + + ++  MR +  +  D  ++  +L   S       
Sbjct: 82  IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQG-LAVDRFSFPPLLKALSRVKSLVE 140

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA----------------- 418
           G+E  GLA        K GF+ +      +V M    GR+ EA                 
Sbjct: 141 GLEIHGLAA-------KLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSI 193

Query: 419 -----------------LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME-- 459
                             E +KN   EP   +L ++L AC    N+  G+ +   +ME  
Sbjct: 194 MIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENN 253

Query: 460 --IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             ++P      V    +YAS G  +    + E M  K
Sbjct: 254 IVVDPHLQSALV---TMYASCGSMDLALNLFEKMTPK 287


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/628 (35%), Positives = 374/628 (59%), Gaps = 30/628 (4%)

Query: 8   SRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNA 67
           S++F     T Q  +V SFPP P                              Y +LL +
Sbjct: 22  SQSFYHSLATHQTASVDSFPPQPTT-------------------------HYGYTSLLQS 56

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C++ + L  G+++HA            L T+L+  Y     L +AR +FD++ ++N+  W
Sbjct: 57  CIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLW 116

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
             +I  Y+       A+ L+ +ML     P+ FT   VL +C+       G+ IH  +IK
Sbjct: 117 NVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIK 176

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           S +E  ++VG++L+DMYAK G + +A  VF+ +  RD V   ++++ YAQ G  +E+I L
Sbjct: 177 SGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISL 236

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
            R++   G+     T  +V+++ + +A L +G+++H    R    S   ++ +LIDMY+K
Sbjct: 237 CREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAK 296

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CGS+  +  +F+ + E+ V+SWNA++ GY+ HG+    ++LF+ MR+E++  PD +T++ 
Sbjct: 297 CGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDR--PDHITFVG 354

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           VL+ CS G + D G A+++ +V  +D G  P ++HY C++D+LG  G++ EA + I+NM 
Sbjct: 355 VLAACSRGRLLDEGRALYNLMV--RDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMS 412

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486
            +P + + G+LL +C++H NV++ E   ++L+E+EP+++GNYVIL+N+YA +G+WE V +
Sbjct: 413 VKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEK 472

Query: 487 VRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
           +R++M +K + K+   SWIE+   ++ F A D SH   + + A++K+L     EAGY PD
Sbjct: 473 LRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPD 532

Query: 547 MSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSK 606
              V +DV+E++K  ++  HSE+LA+ FGLI T  G  + + KNLRIC DCH   KF+SK
Sbjct: 533 TGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISK 592

Query: 607 VYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +  R++++RD NR+H    G CSCGD+W
Sbjct: 593 IMEREITVRDVNRYHSFKHGMCSCGDHW 620


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/581 (40%), Positives = 361/581 (62%), Gaps = 7/581 (1%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  LL+AC++ ++L  G ++ + ++     R    L ++LI  ++ C  L  ARK+FD
Sbjct: 139 EAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFD 198

Query: 118 EMRERNVVS---WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           ++ + ++++   W AM   YS+     +AL +++ ML S  EP  F+ +  L +C     
Sbjct: 199 DVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD 258

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             +G+ IH+ I+K   +    V + LL +Y ++G   +AR VF+ + ER+VV+  ++IS 
Sbjct: 259 LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISV 318

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            ++     E   LFRK+Q E +  ++ T  ++L A S +AAL  GK++H+ +L+ +    
Sbjct: 319 LSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 378

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V L NSL+DMY KCG + YSRRVFD M  + + SWN ML  Y+ +G   EV+ LF  M E
Sbjct: 379 VPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE 438

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V PD +T++A+LSGCS  G+ + GL++F E +  +    P +EHY C+VD+LGRAG+
Sbjct: 439 SG-VAPDGITFVALLSGCSDTGLTEYGLSLF-ERMKTEFRVSPALEHYACLVDILGRAGK 496

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA++ I+ MPF+P+A+I GSLL +CR+H NV +GE   + L  +EP N GNYV++SN+
Sbjct: 497 IKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNI 556

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV-KQ 533
           YA A  W++V ++RE+MK++ V K+ G SW+++   +  F A         +   KV  +
Sbjct: 557 YADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTE 616

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L    +++GY P+ S VL+DVDEE K   + GHSE+LA T+ LI T EG PIR+ KNLR+
Sbjct: 617 LQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRV 676

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH++ K VS+V  R + LRD  RFHH V+G CSC DYW
Sbjct: 677 CADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 365/609 (59%), Gaps = 42/609 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA--RKMFDEMR 120
           ++L+ C +   ++   +VHAH+ +       ++  +L+    K +   D   R +F ++ 
Sbjct: 44  SVLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVE 100

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N   WTA+I  Y+ +    E++ L+  M R    P  FTF  +L +C+ A    LG+Q
Sbjct: 101 YPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQ 160

Query: 181 IHS-LIIKSNFESHIYVGSSLLDMY-------------------------------AKAG 208
           +H+  I+   F S +YVG++L+DMY                               AK G
Sbjct: 161 VHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVG 220

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  A  +F+ LP +D+V+ TA+++GYAQ     EA+E+F ++Q  G+ ++ VT   V++
Sbjct: 221 NMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVIS 280

Query: 269 ALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           A + L A  +   V     +  F   S VV+ ++LIDMY+KCGS+  + +VF+ M ER V
Sbjct: 281 ACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNV 340

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
            S+++M+VG++ HG+    +ELF+ M +  ++KP+ VT++ VL+ CSH GM ++G  +F 
Sbjct: 341 YSYSSMIVGFAMHGLAGAAMELFDEMLK-TEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            + +C  G  P  +HY C+VD+LGRAGR+ EAL  +K MP  P   + G+LLGACR+H N
Sbjct: 400 MMEECH-GVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGN 458

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            D+ +     L E+EP   GNY++LSN+YASAGRW+DV++VR+LM+ K + K+PG SW+E
Sbjct: 459 PDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVE 518

Query: 507 LDQ-ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
             + I+H F A D SHP   E+   ++ L  + K  GY P++S V YD+ +E+K+++L+ 
Sbjct: 519 GKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMS 578

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSEKLAL FGL+ T  G  IR++KNLRIC DCH+     S++ GR++ +RD  RFHH  +
Sbjct: 579 HSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRD 638

Query: 626 GTCSCGDYW 634
           G CSCG++W
Sbjct: 639 GRCSCGNFW 647



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--YSRRVFDNMSE 323
           +++ L G   +   KQVH+H+ R  +     +   L+   +K       Y R VF  +  
Sbjct: 42  LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
                W A++ GY+  G   E V L+N MR +  + P S T+ A+L  CS     + G  
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQG-IGPVSFTFTALLKACSAALDVNLGRQ 160

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           V H       GF  ++     ++DM  + G +G
Sbjct: 161 V-HTQTILIGGFGSDLYVGNTLIDMYVKCGCLG 192


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/575 (41%), Positives = 358/575 (62%), Gaps = 4/575 (0%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            Y ++L  C +   L  G+++H H+IKT ++  VY+ + LI  Y K   L+ A ++   + 
Sbjct: 466  YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            E +VVSWTAMI+ Y Q     EAL LF  M     + +   FA+ +++CAG      G+Q
Sbjct: 526  EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ 585

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            IH+    + F + + + ++L+ +YA+ GRI EA   FE + +++ +S  +++SG AQ G 
Sbjct: 586  IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGY 645

Query: 241  DEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA+++F R L+ E  + N  TY S ++A + LA +  G+Q+HS VL+    S   + N
Sbjct: 646  FEEALQVFVRMLRTEAEV-NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSN 704

Query: 300  SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            SLI +Y+K GS++ + R F++MSER VISWNAM+ GYS+HG G E + LF  M+    + 
Sbjct: 705  SLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG-IM 763

Query: 360  PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            P+ VT++ VLS CSH G+   GL  F  +    D   P+ EHY CVVD+LGRAG++  A+
Sbjct: 764  PNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHD-LVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 420  EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            E+IK MP    A I  +LL AC +H N++IGE     L+E+EPE++  YV++SN+YA + 
Sbjct: 823  EYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            +W      R+LMK++ V K+PGRSWIE+   +H F+A D+ HP+  ++   +  L+ +  
Sbjct: 883  QWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTS 942

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            E GYV D   +L + ++ QK+ +   HSEKLA+ FGL+      PIRV+KNLR+C DCHN
Sbjct: 943  EIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHN 1002

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            + K+VSK+  R + +RD +RFHH   G CSC D+W
Sbjct: 1003 WIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 203/365 (55%), Gaps = 5/365 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC +   L  G ++H+H IK      + L   L+  Y+KC  +  A K F      
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE 426

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+V W  M+ AY Q  +  ++  +F +M      PN+FT+ ++L +C       LG+QIH
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +IK+ F+ ++YV S L+DMYAK G++  A  +   LPE DVVS TA+I+GY Q  +  
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFS 546

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LF +++  G+  + + +AS ++A +G+ AL  G+Q+H+        + + + N+LI
Sbjct: 547 EALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALI 606

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPD 361
            +Y++CG +  +   F+ + ++  ISWN+++ G ++ G   E +++F  ++R E +V  +
Sbjct: 607 SLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV--N 664

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             TY + +S  +      +G  + H +V  K G++ E E    ++ +  ++G + +A   
Sbjct: 665 MFTYGSAISAAASLANIKQGQQI-HSMV-LKTGYDSEREVSNSLISLYAKSGSISDAWRE 722

Query: 422 IKNMP 426
             +M 
Sbjct: 723 FNDMS 727



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 207/403 (51%), Gaps = 4/403 (0%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVN-QRTLRGGQRVHAHMIKTCYRPPVYLR 96
           SN Q+      M   G+      +  +L ACV         ++VH+      +     + 
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LI  Y+K   +  A+K+F+ +  +++V+W AMIS  SQ     EA+ LF  M  S+  
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P  +  ++VL++      FELG+Q+H L+IK  F S  YV + L+ +Y+++ ++  A  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F  +  RD VS  ++ISG  Q G  + A+ELF K+Q + +  + +T AS+L+A + + AL
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G Q+HSH ++  + + ++L+ SL+D+YSKC  +  + + F       ++ WN MLV Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAY 438

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            +     +  E+F  M+ E  + P+  TY ++L  C+  G    G  +   ++  K GF+
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGEQIHTHVI--KTGFQ 495

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
             +     ++DM  + G++  AL  ++ +P +   +    + G
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 190/358 (53%), Gaps = 7/358 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+A    +    G+++H  +IK  +    Y+   L+  Y++   L  A ++F  M  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS+ ++IS   Q+  S  AL LF +M R   +P+  T A++L++CA       G Q+H
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S  IK+   + I +  SLLD+Y+K   +  A   F      ++V    ++  Y QL    
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNS 300
           ++ E+FR++Q+EGMI N  TY S+L   + L AL  G+Q+H+HV++  F++  YV   + 
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVC--SV 503

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+K G L  + R+   + E  V+SW AM+ GY +H M  E ++LF  M E   ++ 
Sbjct: 504 LIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM-EYRGIQF 562

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D++ + + +S C+      +G  +  +      GF  ++     ++ +  R GR+ EA
Sbjct: 563 DNIGFASAISACAGIRALRQGQQIHAQ--SYAAGFGADLSINNALISLYARCGRIQEA 618



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 190/374 (50%), Gaps = 4/374 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+   ++ Y  LL  C+   +L    R+H  + K+ +     L   L+  Y +   
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
              A K+FDE   R+V SW  MI  +  +  +F+   LF RML     PN +TFA VL +
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 169 CAGA-FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C G    F   KQ+HS      F+S   V + L+D+Y+K G I  A+ VF C+  +D+V+
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISG +Q GL+EEAI LF  +    +       +SVL+A + +     G+Q+H  V+
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++   S   + N L+ +YS+   L  + R+F  M+ R  +S+N+++ G  + G     +E
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M + + +KPD +T  ++LS C+  G   +G+ +    +  K G   +I   G ++D
Sbjct: 349 LFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI--KAGMSADIILEGSLLD 405

Query: 408 MLGRAGRVGEALEF 421
           +  +   V  A +F
Sbjct: 406 LYSKCADVETAHKF 419



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 141/232 (60%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++     + + ++AC   R LR GQ++HA      +   + +   LI  Y +C 
Sbjct: 554 EMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCG 613

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + +A   F+++ ++N +SW +++S  +Q  +  EAL +F+RMLR++ E N FT+ + ++
Sbjct: 614 RIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS 673

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A     + G+QIHS+++K+ ++S   V +SL+ +YAK+G I +A   F  + ER+V+S
Sbjct: 674 AAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVIS 733

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
             A+I+GY+Q G   EA+ LF +++V G++ N+VT+  VL+A S +  +  G
Sbjct: 734 WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           I+L   ++  G+ SNY  Y  +L       +L    ++H  + +       +L +SL+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y + G    + +VFD  S R+V SWN M+  +       +V  LF  M  E  + P+  T
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYT 161

Query: 365 YLAVLSGCSHGGM 377
           +  VL  C  G +
Sbjct: 162 FAGVLKACVGGDI 174


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 352/587 (59%), Gaps = 2/587 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  +L  C     +  G+++H+  IK  +   +Y+   LI  Y+K  
Sbjct: 336 QMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYG 395

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL  ARK+ + + +R+VVSWT+MI+ Y Q     EAL  F  M      P+    A+  +
Sbjct: 396 CLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAAS 455

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CAG      G QIH+ +  S + + I + ++L+++YA+ GR  EA  +F  +  +D ++
Sbjct: 456 ACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT 515

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +ISG+ Q  L ++A+ +F K+   G   N  T+ S ++AL+ LA +  GKQVH   +
Sbjct: 516 WNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAV 575

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S   + N+LI +Y KCGS+  ++ +F  MS R  +SWN ++   S+HG G E ++
Sbjct: 576 KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALD 635

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL+ F  + +   G  P  +HY CVVD
Sbjct: 636 LFDQMKQEG-LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVY-GLNPIPDHYACVVD 693

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAG++  A  F+  MP    A I  +LL AC+VH N++IGE   + L+E+EP ++ +
Sbjct: 694 ILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSAS 753

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA  G+W +  +VR++MK++ + K+PGRSWIE+   +H F   DR HP+ +++
Sbjct: 754 YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQI 813

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              + +L+ +  + GY  +   + ++ ++EQK+     HSEKLA+ FGL+  P   P+RV
Sbjct: 814 YKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRV 873

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IKNLR+C DCH++ K  S+V  R++ LRD  RFHH   G+CSCGDYW
Sbjct: 874 IKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 210/409 (51%), Gaps = 5/409 (1%)

Query: 37  CSNGQLTKALI-EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C +G+    +  EM   GL        +LL AC +   L+ G+++H++++K         
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYIT 282

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A  +F+     NVV W  M+ AY Q +   ++  +F +M  +  
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN+FT+  +L +C      ELG+QIHSL IK+ FES +YV   L+DMY+K G + +AR 
Sbjct: 343 HPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARK 402

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           + E L +RDVVS T++I+GY Q    EEA+  F+++Q  G+  + +  AS  +A +G+ A
Sbjct: 403 ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKA 462

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G Q+H+ V      + + + N+L+++Y++CG    +  +F  +  +  I+WN ++ G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISG 522

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           + +  + ++ + +F  M +    K +  T+++ +S  ++     +G  V    V  K G 
Sbjct: 523 FGQSRLYKQALMVFMKMGQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAV--KTGH 579

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
             E E    ++ + G+ G + +A      M      +   +++ +C  H
Sbjct: 580 TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQH 627



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 178/326 (54%), Gaps = 5/326 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   +  AR++F E+  R+ VSW AM+S Y+Q     EA  L+ +M  +   P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +  ++VL++C     F  G+ IH+ + K  F S  +VG++L+ +Y   G    A  VF 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +   D V+   +ISG+AQ G  E A+++F ++Q+ G+  + VT AS+L A + +  L  
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYS 337
           GKQ+HS++L+  +    + + SL+D+Y KCG +  +  +F N+ +RT V+ WN MLV Y 
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVAYG 322

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +     +  E+F  M +   + P+  TY  +L  C+  G  + G  +    +  K+GFE 
Sbjct: 323 QISDLAKSFEIFGQM-QATGIHPNQFTYPCILRTCTCTGQIELGEQIHS--LSIKNGFES 379

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIK 423
           ++   G ++DM  + G + +A + ++
Sbjct: 380 DMYVSGVLIDMYSKYGCLDKARKILE 405



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 176/363 (48%), Gaps = 3/363 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC   +    G+ +HA + K  +    ++   LI  Y        A ++F +M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T A++L +CA     + GKQ+H
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLH 268

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++K+          SLLD+Y K G I  A  +F      +VV    ++  Y Q+    
Sbjct: 269 SYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLA 328

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ E+F ++Q  G+  N  TY  +L   +    +  G+Q+HS  ++    S + +   LI
Sbjct: 329 KSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI 388

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  +R++ + + +R V+SW +M+ GY +H    E +  F  M ++  V PD+
Sbjct: 389 DMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM-QDCGVWPDN 447

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +   +  S C+      +GL +   +     G+  +I  +  +V++  R GR  EA    
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVY--VSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 423 KNM 425
           + +
Sbjct: 506 REI 508



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 128/239 (53%), Gaps = 3/239 (1%)

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH+  +     +   +G+ L+D+YAK G + +AR VF+ L  RD VS  A++SGYAQ G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L +EA  L+ ++    +I      +SVL+A +       G+ +H+ V +    S   + N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI +Y   GS   + RVF +M     +++N ++ G+++ G G   +++F+ M + + ++
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM-QLSGLR 242

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           PD VT  ++L+ C+  G   +G  +   ++     F+   E  G ++D+  + G +  A
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIETA 299



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q     ++M   G +     + + ++A  N   ++ G++VH   +KT +     +   LI
Sbjct: 531 QALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALI 590

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + DA+ +F EM  RN VSW  +I++ SQ     EAL+LF +M +   +PN+ 
Sbjct: 591 SLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650

Query: 161 TFATVLTSCAGAFGFELG----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           TF  VL +C+     E G    K + ++   +    H    + ++D+  +AG++  AR  
Sbjct: 651 TFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHY---ACVVDILGRAGQLDRARRF 707

Query: 217 FECLP 221
            + +P
Sbjct: 708 VDEMP 712


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 351/571 (61%), Gaps = 6/571 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C N   +R   +VHAH++       + +  +L+  Y + + + DA  +FD +  R+
Sbjct: 9   LLLRCRNVFHIR---QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRD 65

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             +W+ M+  +++          F  +LR    P+ +T   V+ +C      ++G+ IH 
Sbjct: 66  SKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHD 125

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           +++K    S  +V +SL+DMYAK   + +A+ +FE +  +D+V+ T +I  YA      E
Sbjct: 126 VVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNA-YE 184

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           ++ LF +++ EG++ + V   +V+ A + L A+   +  + +++R      V+L  ++ID
Sbjct: 185 SLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMID 244

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+  +R VFD M E+ VISW+AM+  Y  HG G++ ++LF++M     + P+ V
Sbjct: 245 MYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLS-CAILPNRV 303

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++++L  CSH G+ + GL  F+ + + +    P+++HY C+VD+LGRAGR+ EAL  I+
Sbjct: 304 TFVSLLYACSHAGLIEEGLRFFNSMWE-EHAVRPDVKHYTCMVDLLGRAGRLDEALRLIE 362

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            M  E    +  +LLGACR+H  +++ E     L+E++P+N G+YV+LSN+YA AG+WE 
Sbjct: 363 AMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEK 422

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V + R++M ++ + K PG +WIE+D   + F   DRSHP  +E+   +  L  K + AGY
Sbjct: 423 VAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGY 482

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VPD   VL DV+EE K+++L  HSEKLA+ FGLI  PEG PIR+ KNLR+C DCH F+K 
Sbjct: 483 VPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKM 542

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           VS +  R + +RD NRFHH  +GTCSCGDYW
Sbjct: 543 VSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 105/199 (52%), Gaps = 13/199 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++NAC     +   +  + ++++  +   V L T +I  Y KC  +  AR++FD M+E+
Sbjct: 206 TVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEK 265

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV+SW+AMI+AY       +A++LF  ML     PN  TF ++L +C+ A   E G +  
Sbjct: 266 NVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLR-- 323

Query: 183 SLIIKSNFESH-----IYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG-- 234
                S +E H     +   + ++D+  +AGR+ EA  + E +  E+D    +A++    
Sbjct: 324 --FFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACR 381

Query: 235 -YAQLGLDEEAIELFRKLQ 252
            ++++ L E+A     +LQ
Sbjct: 382 IHSKMELAEKAANSLLELQ 400


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/581 (40%), Positives = 361/581 (62%), Gaps = 7/581 (1%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  LL+AC++ ++L  G ++ + ++     R    L ++LI  ++ C  L  ARK+FD
Sbjct: 132 EAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFD 191

Query: 118 EMRERNVVS---WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           ++ + ++++   W AM   YS+     +AL +++ ML S  EP  F+ +  L +C     
Sbjct: 192 DVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD 251

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             +G+ IH+ I+K   +    V + LL +Y ++G   +AR VF+ + ER+VV+  ++IS 
Sbjct: 252 LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISV 311

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            ++     E   LFRK+Q E +  ++ T  ++L A S +AAL  GK++H+ +L+ +    
Sbjct: 312 LSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 371

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V L NSL+DMY KCG + YSRRVFD M  + + SWN ML  Y+ +G   EV+ LF  M E
Sbjct: 372 VPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIE 431

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V PD +T++A+LSGCS  G+ + GL++F E +  +    P +EHY C+VD+LGRAG+
Sbjct: 432 SG-VAPDGITFVALLSGCSDTGLTEYGLSLF-ERMKTEFRVSPALEHYACLVDILGRAGK 489

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA++ I+ MPF+P+A+I GSLL +CR+H NV +GE   + L  +EP N GNYV++SN+
Sbjct: 490 IKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNI 549

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV-KQ 533
           YA A  W++V ++RE+MK++ V K+ G SW+++   +  F A         +   KV  +
Sbjct: 550 YADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTE 609

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L    +++GY P+ S VL+DVDEE K   + GHSE+LA T+ LI T EG PIR+ KNLR+
Sbjct: 610 LQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRV 669

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH++ K VS+V  R + LRD  RFHH V+G CSC DYW
Sbjct: 670 CADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 358/602 (59%), Gaps = 6/602 (0%)

Query: 37  CSN-GQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           CS  G  T+AL   A +   G+      + ++L        L  G +VHA ++++     
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN 270

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++   L+ FY+KC+CL D R++FDEM ER+ VS+  +I+AY+    +   L LF  M +
Sbjct: 271 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 330

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +     +AT+L+         +GKQIH+ ++     S   +G++L+DMY+K G +  
Sbjct: 331 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+  F    E+  +S TA+I+GY Q G  EEA++LF  ++  G+  +  T++S++ A S 
Sbjct: 391 AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA +G G+Q+HS+++R    S V   + L+DMY+KCG L  + R FD M ER  ISWNA+
Sbjct: 451 LAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  Y+ +G  +  +++F  M       PDSVT+L+VL+ CSH G+ D  +  FH ++  +
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCG-FNPDSVTFLSVLAACSHNGLADECMKYFH-LMKHQ 568

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
               P  EHY CV+D LGR G   +  + +  MPF+    I  S+L +CR+H N ++   
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 628

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
              +L  +EP +A  YVILSN+YA AG+WED   V+++M+++ V K+ G SW+E+ Q ++
Sbjct: 629 AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 688

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
           +F ++D + PM +E+  ++ +L  +  + GY PD++C L+ VD E K + L  HSE+LA+
Sbjct: 689 SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 748

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            F L+ TP G PIR++KNL  C+DCH   K +SK+  R + +RD  RFHH  +G CSCGD
Sbjct: 749 AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808

Query: 633 YW 634
           YW
Sbjct: 809 YW 810



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 191/347 (55%), Gaps = 3/347 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +H   IK      V++   L+  Y K   L+ AR++F EM +++ V++ AM+   S++  
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +AL LF  M R+      FTF+++LT  AG     LG Q+H+L+++S    +++V +S
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD Y+K   + + R +F+ +PERD VS   II+ YA        + LFR++Q  G    
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            + YA++L+    L  +  GKQ+H+ ++   + S  +L N+LIDMYSKCG L  ++  F 
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           N SE++ ISW A++ GY ++G   E ++LF+ MR    ++PD  T+ +++   S   M  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIG 455

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G  +   ++  + G++  +     +VDM  + G + EAL     MP
Sbjct: 456 LGRQLHSYLI--RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 137/252 (54%), Gaps = 5/252 (1%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y+    L  A+ +F     RN  +WT M+ A++    + +AL+LF  ML     P+  T 
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            TVL              +H   IK   ++H++V ++LLD Y K G +  AR VF  + +
Sbjct: 144 TTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHD 198

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           +D V+  A++ G ++ GL  +A++LF  ++  G+ + + T++S+LT  +G+A L  G QV
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H+ VLR      V + NSL+D YSKC  L   RR+FD M ER  +S+N ++  Y+ +   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 343 REVVELFNLMRE 354
             V+ LF  M++
Sbjct: 319 ATVLRLFREMQK 330



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +I+  + +L  Y+ +G +  A+ +F   P R+  + T ++  +A  G   +A+ LFR + 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            EG+I + VT  +VL  L G         +H   ++F + ++V + N+L+D Y K G L 
Sbjct: 133 GEGVIPDRVTVTTVLN-LPGCTV----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY---LAVL 369
            +RRVF  M ++  +++NAM++G SK G+  + ++LF  MR    +     T+   L V 
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVA 246

Query: 370 SGCSH 374
           +G +H
Sbjct: 247 AGMAH 251


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 358/602 (59%), Gaps = 6/602 (0%)

Query: 37  CSN-GQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           CS  G  T+AL   A +   G+      + ++L        L  G +VHA ++++     
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN 270

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++   L+ FY+KC+CL D R++FDEM ER+ VS+  +I+AY+    +   L LF  M +
Sbjct: 271 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 330

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +     +AT+L+         +GKQIH+ ++     S   +G++L+DMY+K G +  
Sbjct: 331 LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+  F    E+  +S TA+I+GY Q G  EEA++LF  ++  G+  +  T++S++ A S 
Sbjct: 391 AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA +G G+Q+HS+++R    S V   + L+DMY+KCG L  + R FD M ER  ISWNA+
Sbjct: 451 LAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 510

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  Y+ +G  +  +++F  M       PDSVT+L+VL+ CSH G+ D  +  FH ++  +
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCG-FNPDSVTFLSVLAACSHNGLADECMKYFH-LMKHQ 568

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
               P  EHY CV+D LGR G   +  + +  MPF+    I  S+L +CR+H N ++   
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 628

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
              +L  +EP +A  YVILSN+YA AG+WED   V+++M+++ V K+ G SW+E+ Q ++
Sbjct: 629 AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 688

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
           +F ++D + PM +E+  ++ +L  +  + GY PD++C L+ VD E K + L  HSE+LA+
Sbjct: 689 SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 748

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            F L+ TP G PIR++KNL  C+DCH   K +SK+  R + +RD  RFHH  +G CSCGD
Sbjct: 749 AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808

Query: 633 YW 634
           YW
Sbjct: 809 YW 810



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 191/347 (55%), Gaps = 3/347 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +H   IK      V++   L+  Y K   L+ AR++F EM +++ V++ AM+   S++  
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +AL LF  M R+      FTF+++LT  AG     LG Q+H+L+++S    +++V +S
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD Y+K   + + R +F+ +PERD VS   II+ YA        + LFR++Q  G    
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            + YA++L+    L  +  GKQ+H+ ++   + S  +L N+LIDMYSKCG L  ++  F 
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           N SE++ ISW A++ GY ++G   E ++LF+ MR    ++PD  T+ +++   S   M  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIG 455

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G  +   ++  + G++  +     +VDM  + G + EAL     MP
Sbjct: 456 LGRQLHSYLI--RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 137/252 (54%), Gaps = 5/252 (1%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y+    L  A+ +F     RN  +WT M+ A++    + +AL+LF  ML     P+  T 
Sbjct: 84  YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTV 143

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            TVL              +H   IK   ++H++V ++LLD Y K G +  AR VF  + +
Sbjct: 144 TTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHD 198

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           +D V+  A++ G ++ GL  +A++LF  ++  G+ + + T++S+LT  +G+A L  G QV
Sbjct: 199 KDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQV 258

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H+ VLR      V + NSL+D YSKC  L   RR+FD M ER  +S+N ++  Y+ +   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 343 REVVELFNLMRE 354
             V+ LF  M++
Sbjct: 319 ATVLRLFREMQK 330



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +I+  + +L  Y+ +G +  A+ +F   P R+  + T ++  +A  G   +A+ LFR + 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            EG+I + VT  +VL  L G         +H   ++F + ++V + N+L+D Y K G L 
Sbjct: 133 GEGVIPDRVTVTTVLN-LPGCTV----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 187

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY---LAVL 369
            +RRVF  M ++  +++NAM++G SK G+  + ++LF  MR    +     T+   L V 
Sbjct: 188 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVA 246

Query: 370 SGCSH 374
           +G +H
Sbjct: 247 AGMAH 251


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 355/597 (59%), Gaps = 24/597 (4%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRT 97
           G+  + + EM  +G+++      +L+    N   ++ G+ VH ++++     +  V + T
Sbjct: 171 GEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTT 230

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            LI  Y K  CL+ A+++FD + +R+VVSWT MI+   +     E    F RML     P
Sbjct: 231 ALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFP 290

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           NE T  +++T C      +LGK  H+ ++++ F   + + ++L+DMY K G++  AR +F
Sbjct: 291 NEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALF 350

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
             + ++DV   + +IS YA +   ++   LF ++    +  N VT  S+L+  +   AL 
Sbjct: 351 NGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALD 410

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK  H+++ R  +   V+L+ +LI+MY+KCG +T +R +F+   +R +  WN M+ G+S
Sbjct: 411 LGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFS 470

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG G+E +ELF+ M E + V+P+ +T++++   CSH G+                    
Sbjct: 471 MHGCGKEALELFSEM-ESHGVEPNDITFVSIFHACSHSGL-------------------- 509

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            +EHYGC+VD+LGRAG + EA   I+NMP  P   I G+LL AC++H N+ +GE   +++
Sbjct: 510 -MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKI 568

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           +E++P+N G  V+ SN+YASA RW DVT VRE M    + K+PG SWIE+   +H F + 
Sbjct: 569 LELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSG 628

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D++     ++   V ++ +K +E+GY P+ + VL ++DEE+KE  L  HSEKLA  FGLI
Sbjct: 629 DKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLI 688

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G PIR++KNLRIC DCH   K +SK+YGR + +RD+NRFHH  EG CSC  YW
Sbjct: 689 STAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 181/355 (50%), Gaps = 5/355 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC    +   G+ +H    K  +   V++   L+  Y KC CL  AR +FD+M ER
Sbjct: 93  SLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPER 152

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSWT M+  Y +     EAL L   M     + +     +++         + G+ +H
Sbjct: 153 DVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVH 212

Query: 183 SLIIKSNFESHIYVG--SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
             I+++  +  + V   ++L+DMY K G +  A+ +F+ L +R VVS T +I+G  +   
Sbjct: 213 GYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCR 272

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +E  + F ++  E +  N +T  S++T    +  L  GK  H+++LR      + L  +
Sbjct: 273 LDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTA 332

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY KCG + Y+R +F+ + ++ V  W+ ++  Y+      +V  LF  M   N VKP
Sbjct: 333 LIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEML-NNDVKP 391

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           ++VT +++LS C+  G  D G    H  ++ + G E ++     +++M  + G V
Sbjct: 392 NNVTMVSLLSLCAEAGALDLGKWT-HAYIN-RHGLEVDVILETALINMYAKCGDV 444



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 217/475 (45%), Gaps = 76/475 (16%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
            L+   ++HAH IKT +  P                       F +       ++  +IS
Sbjct: 21  NLQQTHQLHAHFIKTQFHNP--------------------HPFFSQSHFTPEANYNLLIS 60

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +Y+       + N ++ M  +D    + F   ++L +CA A   +LG+++H    K+ F 
Sbjct: 61  SYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFA 120

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S ++V ++L++MY K G +  AR VF+ +PERDVVS T ++  Y +     EA+ L R++
Sbjct: 121 SDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREM 180

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCG 309
           Q  G+  + V   S++     L  +  G+ VH +++R   +    V +  +LIDMY K G
Sbjct: 181 QFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGG 240

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            L  ++R+FD +S+R+V+SW  M+ G  +     E  + FN M EE K+ P+ +T L+++
Sbjct: 241 CLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEE-KLFPNEITLLSLI 299

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK------ 423
           + C   G  D G   FH  +  ++GF   +     ++DM G+ G+VG A           
Sbjct: 300 TECGFVGTLDLG-KWFHAYL-LRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKD 357

Query: 424 ----------------------------NMPFEPTAAILGSLLGACRVHYNVDIGE---- 451
                                       N   +P    + SLL  C     +D+G+    
Sbjct: 358 VKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHA 417

Query: 452 FVGQRLMEIEP--ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
           ++ +  +E++   E A     L N+YA  G   DVT  R L  E A+ +D  R W
Sbjct: 418 YINRHGLEVDVILETA-----LINMYAKCG---DVTIARSLFNE-AMQRDI-RMW 462


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 350/565 (61%), Gaps = 37/565 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP- 157
           L+  Y +   +S+AR++FD M  R+VVSW  M+S Y+++    EA  LF      D  P 
Sbjct: 74  LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPV 127

Query: 158 -NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------------------ 192
            + FT+  V++  A     E  +++   + + N  S                        
Sbjct: 128 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM 187

Query: 193 ---HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++   +++L  YA+AG + EA+ VF+ +P++D VS  A+++ Y+Q G  EE ++LF 
Sbjct: 188 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFI 247

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G   N   +A VL+  + +AAL  G Q+H  ++R        + N+L+ MY KCG
Sbjct: 248 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 307

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++  +R  F+ M ER V+SWN M+ GY++HG G+E +E+F++MR     KPD +T + VL
Sbjct: 308 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMR-TTSTKPDDITLVGVL 366

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+ ++G++ F+ +     G   + EHY C++D+LGRAGR+ EA + +K+MPFEP
Sbjct: 367 AACSHSGLVEKGISYFYSM-HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 425

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            + + G+LLGA R+H N ++G    +++ E+EPENAG YV+LSN+YAS+G+W D  ++R 
Sbjct: 426 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRV 485

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +M+E+ V K PG SWIE+   +HTF A D  HP +E++ A ++ L ++ K+AGYV     
Sbjct: 486 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 545

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+DV+EE+KE +L  HSEKLA+ +G++  P G PIRVIKNLR+C DCHN  K++S + G
Sbjct: 546 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 605

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + LRD NRFHH   G+CSCGDYW
Sbjct: 606 RLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 18/242 (7%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S AR  FD   E++ VSW  M++AY +     EA  LF     S TE +  ++  +++ 
Sbjct: 22  VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSG 77

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL-DMYAKAGRIHEARGVFECLPERDVVS 227
                  + GK   +  +         V  +++   YA+ G + EAR +F+  P RDV +
Sbjct: 78  YV-----QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 132

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA++SGYAQ G+ EEA  +F  +       N V++ +++ A      +   K++ + + 
Sbjct: 133 WTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMP 188

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
              + S+    N+++  Y++ G L  ++ VFD M ++  +SW AML  YS+ G   E ++
Sbjct: 189 CRNVASW----NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244

Query: 348 LF 349
           LF
Sbjct: 245 LF 246



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 140/314 (44%), Gaps = 43/314 (13%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           + +L  Y + GR+ EARG+F    E DV+S  A++SGY Q G   EA ELF ++    ++
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRR 316
           S  +        +SG A    G  V +  L    P   V    +++  Y++ G L  +RR
Sbjct: 101 SWNIM-------VSGYAR--RGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 151

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD M ER  +SWNAM+  Y +  M  E  ELFN+M   N       ++  +L+G +  G
Sbjct: 152 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAG 206

Query: 377 MEDRGLAVFHEIVDCKDG--FEPEIEHY---GCVVDMLGRAGRVGEALEFIKNMPFE--- 428
           M +   AVF + +  KD   +   +  Y   GC  + L     +G   E++    F    
Sbjct: 207 MLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVL 265

Query: 429 PTAAILGSLLGACRVHYNV-----DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            T A + +L    ++H  +      +G FVG  L+               +Y   G  ED
Sbjct: 266 STCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA--------------MYFKCGNMED 311

Query: 484 VTRVRELMKEKAVT 497
                E M+E+ V 
Sbjct: 312 ARNAFEEMEERDVV 325



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS   L +  IEM   G  +    +  +L+ C +   L  G ++H  +I+  Y    ++ 
Sbjct: 238 CSEETL-QLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 296

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DAR  F+EM ER+VVSW  MI+ Y++     EAL +F  M  + T+
Sbjct: 297 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 356

Query: 157 PNEFTFATVLTSCAGAFGFELGKQI-----HSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           P++ T   VL +C+ +   E G        H   + +  E +    + ++D+  +AGR+ 
Sbjct: 357 PDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLA 412

Query: 212 EARGVFECLP 221
           EA  + + +P
Sbjct: 413 EAHDLMKDMP 422



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 38/226 (16%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           V  N +I  ++  G ++ +R  FD   E+  +SWN ML  Y ++G   E   LFN     
Sbjct: 7   VTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----- 61

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           ++ + D +++ A++SG    G     ++   E+ D   G   ++  +  +V    R G +
Sbjct: 62  SRTEWDVISWNALMSGYVQWGK----MSEARELFDRMPG--RDVVSWNIMVSGYARRGDM 115

Query: 416 GEALEFIKNMP----FEPTAAILG----SLLGACR-----------VHYNVDIGEFVGQR 456
            EA       P    F  TA + G     +L   R           V +N  +  ++ +R
Sbjct: 116 VEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRR 175

Query: 457 LMEIEPE--------NAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +M+   E        N  ++  +   YA AG  E+   V + M +K
Sbjct: 176 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK 221


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/661 (37%), Positives = 361/661 (54%), Gaps = 68/661 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  K L++M   G          +L++C   +    G++VH+ ++K      V +   +
Sbjct: 146 GEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSV 205

Query: 100 IVFYNKC---ECLSD----------------------------ARKMFDEMRERNVVSWT 128
           +  Y KC   E  S                             A  +F+ M  R++VSW 
Sbjct: 206 LNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWN 265

Query: 129 AMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           AMI+ Y+Q     +AL LF RML  S   P+EFT  +VL++CA      +GKQ+H+ I++
Sbjct: 266 AMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILR 325

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGV------------------------------- 216
           +    +  V ++L+  YAK+G +  AR +                               
Sbjct: 326 TEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 385

Query: 217 --FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
             F  +  RDVV+ TA+I GY Q G ++EAI+LFR +   G   N  T A+VL+  + LA
Sbjct: 386 EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 445

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAML 333
            L +GKQ+H   +R  +     + N++I MY++ GS  ++RR+FD +  R   I+W +M+
Sbjct: 446 CLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           V  ++HG G E V LF  M     V+PD +TY+ VLS CSH G  + G   + +I + + 
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAG-VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN-EH 563

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
              PE+ HY C+VD+L RAG   EA EFI+ MP EP A   GSLL ACRVH N ++ E  
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L+ I+P N+G Y  ++N+Y++ GRW D  R+ +  KEKAV K+ G SW  +   +H 
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F A D  HP R+ + A   ++  + K AG+VPD+  VL+DVD+E KE++L  HSEKLA+ 
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIA 743

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TPE   +RV+KNLR+C DCH   K +SKV  R++ +RD  RFHH  +G CSC DY
Sbjct: 744 FGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDY 803

Query: 634 W 634
           W
Sbjct: 804 W 804



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 168/342 (49%), Gaps = 41/342 (11%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           R  V+    L+  + K   L+DAR +F EM ER+ VSWT M+   ++     EA+   + 
Sbjct: 95  RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA-- 207
           M      P +FT   VL+SCA      +G+++HS ++K    S + V +S+L+MY K   
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGD 214

Query: 208 -----------------------------GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
                                        GR+  A  +FE +P R +VS  A+I+GY Q 
Sbjct: 215 AETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQN 274

Query: 239 GLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           GLD +A++LF R L    M  +  T  SVL+A + L  +  GKQVH+++LR E+     +
Sbjct: 275 GLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV 334

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSER--TVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            N+LI  Y+K GS+  +RR+ D   E    VIS+ A+L GY K G      E+F +M   
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
                D V + A++ G    G  D  + +F  ++ C  G EP
Sbjct: 395 -----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITC--GPEP 429



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 133/257 (51%), Gaps = 33/257 (12%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +++  +SLL M+AK+GR+ +ARGVF  +PERD VS T ++ G  + G   EAI+    + 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-- 310
            +G      T  +VL++ +   A   G++VHS V++  + S V + NS+++MY KCG   
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 311 -----------------------------LTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
                                        +  +  +F++M  R+++SWNAM+ GY+++G+
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             + ++LF+ M  E+ + PD  T  +VLS C++ G    G  V   I+  +  +  ++ +
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 402 YGCVVDMLGRAGRVGEA 418
              ++    ++G V  A
Sbjct: 337 --ALISTYAKSGSVENA 351


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/587 (38%), Positives = 368/587 (62%), Gaps = 9/587 (1%)

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           AT+G +M    Y T++  C N + L   +++H+ ++K  +     + T L   Y+KC  L
Sbjct: 295 ATMG-KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGEL 353

Query: 110 SDARKMFD-EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +DA  +F      RNVVSWTA+IS   Q      A+ LF RM      PNEFT++ +L +
Sbjct: 354 ADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                   L  QIH+ +IK+N++    VG++LL  Y+K G   +A  +F+ + ++DVV+ 
Sbjct: 414 SLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAW 469

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVL 287
           +A++S +AQ G  E A  LF K+ ++G+  N  T +SV+ A +  +A +  G+Q H+  +
Sbjct: 470 SAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISI 529

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++     + + ++L+ MYS+ G++  ++ VF+  ++R ++SWN+M+ GY++HG   + +E
Sbjct: 530 KYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIE 589

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F  M E + ++ D VT+LAV+ GC+H G+   G   F  +V       P +EHY C+VD
Sbjct: 590 TFRQM-EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR-DHKINPTMEHYACMVD 647

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +  RAG++ E +  I++MPF   A +  +LLGACRVH NV++G+F   +L+ +EP ++  
Sbjct: 648 LYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSST 707

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA+AG+W++   VR+LM  + V K+ G SWI++   +H+F A D+SHPM +++
Sbjct: 708 YVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQI 767

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             K+K +  + K+ GY P+ S VL+D+ E+QKE +L+ HSE+LAL FGLI TP G P+++
Sbjct: 768 YKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQI 827

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +KNLR+C DCH   K VS +  R++ +RD +RFHH   G CSCGD+W
Sbjct: 828 VKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 64  LLNAC--VNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +L AC  V  R L  G+++H   +K  + R  V   T L+  Y KC  + +  ++F+ M 
Sbjct: 105 VLKACRSVPDRVL--GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMP 162

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++NVV+WT++++  +      E + LF RM      PN FTFA+VL++ A     +LG++
Sbjct: 163 KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR 222

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+  +K    S ++V +SL++MYAK G + +A+ VF  +  RD+VS   +++G      
Sbjct: 223 VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNEC 282

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           + EA++LF + +         TYA+V+   + L  L   +Q+HS VL+        +  +
Sbjct: 283 ELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTA 342

Query: 301 LIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           L D YSKCG L  +  +F      R V+SW A++ G  ++G     V LF+ MRE+ +V 
Sbjct: 343 LADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRED-RVM 401

Query: 360 PDSVTYLAVL 369
           P+  TY A+L
Sbjct: 402 PNEFTYSAML 411



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 198/398 (49%), Gaps = 23/398 (5%)

Query: 32  NLKTLCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHM 84
           +L T C++ Q+     E+  L   MR E        + ++L+A  +Q  L  GQRVHA  
Sbjct: 171 SLLTGCAHAQMHS---EVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
           +K   R  V++   L+  Y KC  + DA+ +F+ M  R++VSW  +++         EAL
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEAL 287

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            LF     +  +  + T+ATV+  CA      L +Q+HS ++K  F     V ++L D Y
Sbjct: 288 QLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAY 347

Query: 205 AKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           +K G + +A  +F      R+VVS TAIISG  Q G    A+ LF +++ + ++ N  TY
Sbjct: 348 SKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY 407

Query: 264 ASVLTA-LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           +++L A LS L       Q+H+ V++        +  +L+  YSK GS   +  +F  + 
Sbjct: 408 SAMLKASLSILP-----PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIE 462

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS--HGGMEDR 380
           ++ V++W+AML  +++ G       LFN M  +  +KP+  T  +V+  C+    G+ D+
Sbjct: 463 QKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG-IKPNEFTISSVIDACACPSAGV-DQ 520

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           G   FH I   K  +   I     +V M  R G +  A
Sbjct: 521 GRQ-FHAI-SIKYRYHDAICVSSALVSMYSRKGNIDSA 556



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 179/359 (49%), Gaps = 12/359 (3%)

Query: 108 CLSD---ARKMFDEMRERNV-VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           CL D   AR   DE+  R+  V    ++  Y+++    E L+ F    R     +  T +
Sbjct: 44  CLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLS 103

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            VL +C       LG+Q+H L +K   +   +  G+SL+DMY K G + E   VFE +P+
Sbjct: 104 CVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPK 163

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           ++VV+ T++++G A   +  E + LF +++ EG+  N  T+ASVL+A++   AL  G++V
Sbjct: 164 KNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRV 223

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H+  ++F   S V + NSL++MY+KCG +  ++ VF+ M  R ++SWN ++ G   +   
Sbjct: 224 HAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECE 283

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIE 400
            E ++LF+  R     K    TY  V+  C++     + LA+  ++  C  K GF     
Sbjct: 284 LEALQLFHESRATMG-KMTQSTYATVIKLCANL----KQLALARQLHSCVLKHGFHLTGN 338

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
               + D   + G + +AL                +++  C  + ++ +   +  R+ E
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 132/348 (37%), Gaps = 78/348 (22%)

Query: 213 ARGVFECLPERDV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           AR   + +P RD  V    ++  YA+ G+  E ++ F   +  G++ +  T + VL A  
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 272 GLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            +     G+Q+H   ++       V    SL+DMY KCGS+     VF+ M ++ V    
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNV---- 166

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                                           VT+ ++L+GC+H  M    +A+F  +  
Sbjct: 167 --------------------------------VTWTSLLTGCAHAQMHSEVMALFFRMR- 193

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             +G  P    +  V+  +   G    AL+             LG  + A  V +     
Sbjct: 194 -AEGIWPNPFTFASVLSAVASQG----ALD-------------LGQRVHAQSVKFGCRSS 235

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK-AVTKDPGRSWIELDQ 509
            FV   LM              N+YA  G  ED   V   M+ +  V+ +   + ++L++
Sbjct: 236 VFVCNSLM--------------NMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNE 281

Query: 510 I----LHTFHASDRSH-PMREELSAKVKQLSVKFKEAGYVPDM-SCVL 551
                L  FH S  +   M +   A V +L    K+      + SCVL
Sbjct: 282 CELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVL 329


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/566 (42%), Positives = 358/566 (63%), Gaps = 11/566 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAY 134
           +++H  ++   Y     +   ++  Y++   L++AR++F EM E   R+ VSW AMI A 
Sbjct: 159 RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
            Q     EA+ LF  M+R   + + FT A+VLT+         G Q H ++IKS F  + 
Sbjct: 219 GQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNS 278

Query: 195 YVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQL-GLDEEAIELFRKLQ 252
           +VGS L+D+Y+K AG + E R VFE +   D+V    +ISG++Q   L E+ I  FR++Q
Sbjct: 279 HVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQ 338

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSL 311
             G   +  ++  V +A S L++   GKQVH+  ++ +IP + V + N+L+ MYSKCG++
Sbjct: 339 HNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNV 398

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             +RRVFD M E  ++S N+M+ GY++HG+  E + LF LM +++ + P+++T++AVLS 
Sbjct: 399 HDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKD-IAPNTITFIAVLSA 457

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           C H G  + G   F+ + + +   EPE EHY C++D+LGRAG++ EA   I+ MPF P +
Sbjct: 458 CVHTGKVEEGQKYFNMMKE-RFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGS 516

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
               +LLGACR H NV++        +++EP NA  YV+LSN+YASA RWE+   V+ LM
Sbjct: 517 IEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLM 576

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           +E+ V K PG SWIE+D+ +H F A D SHPM +E+   + ++  K K+AGYVPD+   L
Sbjct: 577 RERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWAL 636

Query: 552 Y---DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
               +V+ ++KE+ LL HSEKLA+ FGLI T E  PI V+KNLRIC DCHN  K +S + 
Sbjct: 637 VKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAIT 696

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GR++++RD +RFH   EG CSCGDYW
Sbjct: 697 GREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 223/480 (46%), Gaps = 50/480 (10%)

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---- 111
           ++ + +  LL AC+ QR L  G+ +HA   K+   P  YL     + Y+KC  L +    
Sbjct: 7   LQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTS 66

Query: 112 ---------------------------ARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
                                      AR++FDE+ + ++VS+  +I+AY+ +     AL
Sbjct: 67  FDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPAL 126

Query: 145 NLF--IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
            LF  +R LR   +   FT + V+ +C    G  L +Q+H  ++   ++ +  V +++L 
Sbjct: 127 RLFAEVRELRFGLDG--FTLSGVIIACGDDVG--LVRQLHCFVVVCGYDCYASVNNAVLA 182

Query: 203 MYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
            Y++ G ++EAR VF  + E   RD VS  A+I    Q     EA+ELFR++   G+  +
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVD 242

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-GSLTYSRRVF 318
             T ASVLTA + +  L  G Q H  +++        + + LID+YSKC G +   R+VF
Sbjct: 243 MFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVF 302

Query: 319 DNMSERTVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           + ++   ++ WN M+ G+S++  +  + +  F  M + N   PD  +++ V S CS+   
Sbjct: 303 EEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREM-QHNGFHPDDCSFVCVTSACSNLSS 361

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
              G  V H +    D     +     +V M  + G V +A      MP E     L S+
Sbjct: 362 PSVGKQV-HALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSM 419

Query: 438 LGACRVHYNVDIGEFVGQRLM---EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +     H  V++       LM   +I P N   ++ + +     G+ E+  +   +MKE+
Sbjct: 420 IAGYAQH-GVEVESLRLFELMLQKDIAP-NTITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 162/298 (54%), Gaps = 5/298 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   GL++      ++L A    + L GG + H  MIK+ +    ++ + LI  Y+KC 
Sbjct: 233 EMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCA 292

Query: 108 -CLSDARKMFDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDTEPNEFTFATV 165
             + + RK+F+E+   ++V W  MIS +SQ +  S + +  F  M  +   P++ +F  V
Sbjct: 293 GGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCV 352

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
            ++C+      +GKQ+H+L IKS+   + + V ++L+ MY+K G +H+AR VF+ +PE +
Sbjct: 353 TSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN 412

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +VS  ++I+GYAQ G++ E++ LF  +  + +  N +T+ +VL+A      +  G++  +
Sbjct: 413 MVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFN 472

Query: 285 HVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
            +  RF I       + +ID+  + G L  + R+ + M      I W  +L    KHG
Sbjct: 473 MMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHG 530


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/575 (41%), Positives = 357/575 (62%), Gaps = 4/575 (0%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            Y ++L  C +   L  G+++H H+IKT ++  VY+ + LI  Y K   L+ A ++   + 
Sbjct: 466  YPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            E +VVSWTAMI+ Y Q     EAL LF  M     + +   FA+ +++CAG      G+Q
Sbjct: 526  EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ 585

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            IH+    + F + + + ++L+ +YA+ GRI EA   FE + +++ +S  +++SG AQ G 
Sbjct: 586  IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGY 645

Query: 241  DEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA+++F R L+ E  + N  TY S ++A + LA +  G+Q+HS VL+    S   + N
Sbjct: 646  FEEALQVFVRMLRTEAEV-NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSN 704

Query: 300  SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            SLI +Y+K GS++ + R F++MSER VISWNAM+ GYS+HG G E + LF  M+    + 
Sbjct: 705  SLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG-IM 763

Query: 360  PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            P+ VT++ VLS CSH G+   GL  F  +    D   P+ EHY CVVD+LGRAG++  A+
Sbjct: 764  PNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHD-LVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 420  EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            E+IK MP    A I  +LL AC +H N++IGE     L+E+EPE++  YV++SN+YA + 
Sbjct: 823  EYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            +W      R+LMK+  V K+PGRSWIE+   +H F+A D+ HP+  ++   +  L+ +  
Sbjct: 883  QWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTS 942

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            E GYV D   +L + ++ QK+ +   HSEKLA+ FGL+      PIRV+KNLR+C DCHN
Sbjct: 943  EIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHN 1002

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            + K+VSK+  R + +RD +RFHH   G CSC D+W
Sbjct: 1003 WIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 203/365 (55%), Gaps = 5/365 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC +   L  G ++H+H IK      + L   L+  Y+KC  +  A K F      
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE 426

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+V W  M+ AY Q  +  ++  +F +M      PN+FT+ ++L +C       LG+QIH
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +IK+ F+ ++YV S L+DMYAK G++  A  +   LPE DVVS TA+I+GY Q  +  
Sbjct: 487 THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFS 546

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LF +++  G+  + + +AS ++A +G+ AL  G+Q+H+        + + + N+LI
Sbjct: 547 EALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALI 606

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPD 361
            +Y++CG +  +   F+ + ++  ISWN+++ G ++ G   E +++F  ++R E +V  +
Sbjct: 607 SLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV--N 664

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             TY + +S  +      +G  + H +V  K G++ E E    ++ +  ++G + +A   
Sbjct: 665 MFTYGSAISAAASLANIKQGQQI-HSMV-LKTGYDSEREVSNSLISLYAKSGSISDAWRE 722

Query: 422 IKNMP 426
             +M 
Sbjct: 723 FNDMS 727



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 207/403 (51%), Gaps = 4/403 (0%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVN-QRTLRGGQRVHAHMIKTCYRPPVYLR 96
           SN Q+      M   G+      +  +L ACV         ++VH+      +     + 
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LI  Y+K   +  A+K+F+ +  +++V+W AMIS  SQ     EA+ LF  M  S+  
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P  +  ++VL++      FELG+Q+H L+IK  F S  YV + L+ +Y+++ ++  A  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F  +  RD VS  ++ISG  Q G  + A+ELF K+Q + +  + +T AS+L+A + + AL
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G Q+HSH ++  + + ++L+ SL+D+YSKC  +  + + F       ++ WN MLV Y
Sbjct: 379 HKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAY 438

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            +     +  E+F  M+ E  + P+  TY ++L  C+  G    G  +   ++  K GF+
Sbjct: 439 GQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGEQIHTHVI--KTGFQ 495

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
             +     ++DM  + G++  AL  ++ +P +   +    + G
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 190/358 (53%), Gaps = 7/358 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+A    +    G+++H  +IK  +    Y+   L+  Y++   L  A ++F  M  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS+ ++IS   Q+  S  AL LF +M R   +P+  T A++L++CA       G Q+H
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S  IK+   + I +  SLLD+Y+K   +  A   F      ++V    ++  Y QL    
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNS 300
           ++ E+FR++Q+EGMI N  TY S+L   + L AL  G+Q+H+HV++  F++  YV   + 
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVC--SV 503

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+K G L  + R+   + E  V+SW AM+ GY +H M  E ++LF  M E   ++ 
Sbjct: 504 LIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM-EYRGIQF 562

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D++ + + +S C+      +G  +  +      GF  ++     ++ +  R GR+ EA
Sbjct: 563 DNIGFASAISACAGIRALRQGQQIHAQ--SYAAGFGADLSINNALISLYARCGRIQEA 618



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 190/374 (50%), Gaps = 4/374 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+   ++ Y  LL  C+   +L    R+H  + K+ +     L   L+  Y +   
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
              A K+FDE   R+V SW  MI  +  +  +F+   LF RML     PN +TFA VL +
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 169 CAGA-FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C G    F   KQ+HS      F+S   V + L+D+Y+K G I  A+ VF C+  +D+V+
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISG +Q GL+EEAI LF  +    +       +SVL+A + +     G+Q+H  V+
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++   S   + N L+ +YS+   L  + R+F  M+ R  +S+N+++ G  + G     +E
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M + + +KPD +T  ++LS C+  G   +G+ +    +  K G   +I   G ++D
Sbjct: 349 LFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI--KAGMSADIILEGSLLD 405

Query: 408 MLGRAGRVGEALEF 421
           +  +   V  A +F
Sbjct: 406 LYSKCADVETAHKF 419



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 141/232 (60%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++     + + ++AC   R LR GQ++HA      +   + +   LI  Y +C 
Sbjct: 554 EMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCG 613

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + +A   F+++ ++N +SW +++S  +Q  +  EAL +F+RMLR++ E N FT+ + ++
Sbjct: 614 RIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS 673

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A     + G+QIHS+++K+ ++S   V +SL+ +YAK+G I +A   F  + ER+V+S
Sbjct: 674 AAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVIS 733

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
             A+I+GY+Q G   EA+ LF +++V G++ N+VT+  VL+A S +  +  G
Sbjct: 734 WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           I+L   ++  G+ SNY  Y  +L       +L    ++H  + +       +L +SL+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y + G    + +VFD  S R+V SWN M+  +       +V  LF  M  E  + P+  T
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYT 161

Query: 365 YLAVLSGCSHGGM 377
           +  VL  C  G +
Sbjct: 162 FAGVLKACVGGDI 174


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/638 (36%), Positives = 373/638 (58%), Gaps = 9/638 (1%)

Query: 3   RPKK---QSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL---GLEM 56
           +PKK   + R  + L  TQ + T  S          LC+  +    L E+  L   G ++
Sbjct: 56  KPKKVEYRERKVAVLDDTQIRKTSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDV 115

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
               YD L++ACV  R++RG +RV  +M+ + + P +Y+  R++  + KC  + DARK+F
Sbjct: 116 GGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLF 175

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           DEM E+++ SW  MI  +    +  EA  LF+ M     +    TF T++ + AG    +
Sbjct: 176 DEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQ 235

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +G+QIHS  +K       +V  +L+DMY+K G I +A  VF+ +PE+  V   +II+ YA
Sbjct: 236 VGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYA 295

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             G  EEA+  + +++  G   ++ T + V+   + LA+L + KQ H+ ++R    + +V
Sbjct: 296 LHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIV 355

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
              +L+D YSK G +  +  VF+ M  + VISWNA++ GY  HG G E VE+F  M  E 
Sbjct: 356 ANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREG 415

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            + P+ VT+LAVLS CS+ G+ +RG  +F+ +       +P   HY C+V++LGR G + 
Sbjct: 416 MI-PNHVTFLAVLSACSYSGLSERGWEIFYSMSR-DHKVKPRAMHYACMVELLGREGLLD 473

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA E I++ PF+PT  +  +LL ACR+H N+++G+   + L  +EPE   NY++L NLY 
Sbjct: 474 EAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYN 533

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S+G+ ++   V + +K K +   P  +WIE+ +  + F   D+SH   +E+  KV  + V
Sbjct: 534 SSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMV 593

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           +    GYV +   +L DVDEE+ +++L  HSEKLA+ FGLI TP   P+++ +  R+C D
Sbjct: 594 EISRHGYVEENKALLPDVDEEE-QRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGD 652

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+  KF++ V GR++ +RD +RFHH  +G+CSCGDYW
Sbjct: 653 CHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 354/592 (59%), Gaps = 3/592 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  ++M  +  +     +  +L   V    +  GQ++H   IKT Y   +++   L+ FY
Sbjct: 230 KLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFY 289

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           +K + +  A+ +FDEM E + VS+  +I+ Y+      ++ +LF R+  +  +   F FA
Sbjct: 290 SKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFA 349

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           T+L+  A      +G+Q H+  + +   S + VG++L+DMYAK  +  +A  +F  L  R
Sbjct: 350 TMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYR 409

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           + V  TAIIS Y Q G  EEA+++F+++  E +  +  T+AS L A + LA++  GKQ+H
Sbjct: 410 NSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLH 469

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           S V+R  + S V   + L+DMY+ CGS+  +  VF  M +R ++ WNA++  YS++G   
Sbjct: 470 SSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAE 529

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
                F  M E   + PDSV++L+VL+ CSH G+ ++ L  F+ +       +P  +HY 
Sbjct: 530 ATFSSFADMIESG-LYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYK-LDPRRKHYA 587

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP- 462
            ++D+L R+GR  EA   I  MPFEP   +  S+L +CR+H N D+ +    +L +++  
Sbjct: 588 TMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDAL 647

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
            +A  YV +SN+YA AG+WE+  +V++ M+E+ V K    SW+E+D  +H F A+DR+HP
Sbjct: 648 RDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHP 707

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
             E++  K+  L     + GY PD SC L +VDEE K + L  HSE+LA+ F LI TPEG
Sbjct: 708 QTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEG 767

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +PI ++KNLR CVDCH   K +SK+ GR++++RD +RFHH  +G+CSCGDYW
Sbjct: 768 SPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 198/379 (52%), Gaps = 3/379 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++     + TLL+   +  TL+   ++H+H+I+  +   + +   L+  Y K  
Sbjct: 133 EMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTC 192

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL  A ++F EM  ++ VS+  MI+ Y++     EAL LF++M   D +P+ FTFA +L 
Sbjct: 193 CLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG 252

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
              G+     G+QIH L IK+++   I+V ++LLD Y+K   I  A+ +F+ +PE D VS
Sbjct: 253 MSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS 312

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              II+GYA  G  E++ +LF++LQ          +A++L+  +    L  G+Q H+  +
Sbjct: 313 YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                S V + N+L+DMY+KC     + R+F N++ R  + W A++  Y + G   E ++
Sbjct: 373 VTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALK 432

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F  M  EN V  D  T+ + L   ++      G  +   ++  + G    +     +VD
Sbjct: 433 MFKEMNREN-VHGDQATFASTLKASANLASVSLGKQLHSSVI--RLGLLSSVFSGSVLVD 489

Query: 408 MLGRAGRVGEALEFIKNMP 426
           M    G + +A+E  K MP
Sbjct: 490 MYANCGSMKDAIEVFKEMP 508



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 136/251 (54%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y K   L  AR++F+ M  RN VSWT MI  YSQ     EA NL+  M RS  +P+  TF
Sbjct: 87  YVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITF 146

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           AT+L+        +   QIHS II+  F + + V +SL+D Y K   +  A  +F  +P 
Sbjct: 147 ATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPT 206

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           +D VS   +I+GY + G  EEA++LF +++      +  T+A++L    G   +  G+Q+
Sbjct: 207 KDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQI 266

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H   ++      + + N+L+D YSK   +  ++ +FD M E   +S+N ++ GY+ +G  
Sbjct: 267 HGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQY 326

Query: 343 REVVELFNLMR 353
            +  +LF  ++
Sbjct: 327 EKSFDLFKRLQ 337



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 162/341 (47%), Gaps = 50/341 (14%)

Query: 190 FESHIYVGSSLLDM----YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           F+   Y  +S ++M    Y K+  +  AR +FE +  R+ VS T +I GY+Q    +EA 
Sbjct: 69  FDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAF 128

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
            L+ ++   G+  +++T+A++L+       L    Q+HSH++RF   + +++ NSL+D Y
Sbjct: 129 NLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSY 188

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            K   L  + ++F  M  +  +S+N M+ GY+K+G   E ++LF  MR  +  +P   T+
Sbjct: 189 CKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMD-FQPSGFTF 247

Query: 366 LAVLSGCSHG------GMEDRGLAV-------------------FHEIVD-CKDGFE--P 397
            A+L G S G      G +  GLA+                    H+ +D  K+ F+  P
Sbjct: 248 AAML-GMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMP 306

Query: 398 EIE--HYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGE- 451
           E++   Y  ++      G+  ++ +  K +    F+       ++L    +  N+ +G  
Sbjct: 307 ELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQ 366

Query: 452 -----FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
                 V   + E++  NA     L ++YA   ++ED  R+
Sbjct: 367 THAQAVVTTAVSEVQVGNA-----LVDMYAKCEKFEDANRI 402


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 347/577 (60%), Gaps = 13/577 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRP-----PVYLRTRLIVFYNKCECLSDARKMFDE 118
           L+  CV   T   G+ +H H+      P      +++   L   Y K   L DA +MFD 
Sbjct: 70  LVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDG 129

Query: 119 MRERNVVSWTAMISAY-SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           M  RNVV+WT +++A  S      EAL   + M R    PN +TF++VL +C       +
Sbjct: 130 MPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTP---GM 186

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
              +H+  +K+  +S ++V SSL+D Y K G +   R VF+ +  RD+V   +II+G+AQ
Sbjct: 187 LTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 246

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G    AIELF +++  G  SN  T  SVL A +G+  L  G+QVH+HVL+++    ++L
Sbjct: 247 SGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYD--RDLIL 304

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+L+DMY KCGSL  +  +F  M +R VISW+ M+ G +++G   E + +F+LM+ +  
Sbjct: 305 HNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQG- 363

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V P+ VT + VL  CSH G+ + G   F  +     G +PE EH+ C+VD+LGRAG++ E
Sbjct: 364 VAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLF-GIQPEREHHNCMVDLLGRAGKLDE 422

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A+EFI  M  EP + I  +LLGACR+H N  +  +  + ++++EP++ G  V+LSN YA 
Sbjct: 423 AVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYAD 482

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
             +W D  +  + M+++ + K+PGRSWIEL++ +H F A D SHP  + +  ++ +L  +
Sbjct: 483 LRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGR 542

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K  GYVP    VL D+  EQKE +L  HSEK+A+ FG +   +G PIR++KNLRIC DC
Sbjct: 543 IKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDC 602

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H FAK VSK  GR + +RD  RFHH  +G CSCGDYW
Sbjct: 603 HAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 332/526 (63%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +   RK+F+ M E+++VSW  +I+  ++     E L +   M  ++ +P+ FT ++VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A       GK+IH   I+   ++ +YV SSL+DMYAK  R+ ++  VF  L ERD +S 
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            +II+G  Q GL +E ++ FR++ +  +     +++S++ A + L  L  GKQ+H ++ R
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                 + + +SL+DMY+KCG++  +R++FD M  R ++SW AM++G + HG   + +EL
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M+ E  ++P+ V ++AVL+ CSH G+ D     F+ +     G  P +EHY  V D+
Sbjct: 490 FEQMKTEG-IEPNYVAFMAVLTACSHAGLVDEAWKYFNSMT-LDFGIAPGVEHYAAVSDL 547

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA +FI  MP  PT ++  +LL ACRVH NVD+ E V  R++E++P+N G Y
Sbjct: 548 LGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAY 607

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           ++L+N+Y++A RW++  + R  ++   + K P  SWIE+   ++ F A D SHP  E++ 
Sbjct: 608 ILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIR 667

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++ L    ++ GYVPD S V +DV+EEQK+ ++  HSE+LA+ FG+I TP G  IRV 
Sbjct: 668 EAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVT 727

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   KF+SK+ GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 728 KNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 133/236 (56%), Gaps = 1/236 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H   I+      VY+ + LI  Y KC  + D+ ++F  + ER+ +SW ++I+   Q
Sbjct: 319 GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQ 378

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E L  F +ML +  +P  ++F++++ +CA      LGKQ+H  I ++ F+ +I++
Sbjct: 379 NGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 438

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            SSL+DMYAK G I  AR +F+ +  RD+VS TA+I G A  G   +AIELF +++ EG+
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGI 498

Query: 257 ISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             NYV + +VLTA S    +    K  +S  L F I   V    ++ D+  + G L
Sbjct: 499 EPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRL 554



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++ AC +  TL  G+++H ++ +  +   +++ + L+  Y KC  +  AR++FD MR
Sbjct: 404 FSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA-FGFELGK 179
            R++VSWTAMI   +   H+ +A+ LF +M     EPN   F  VLT+C+ A    E  K
Sbjct: 464 LRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWK 523

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             +S+ +       +   +++ D+  +AGR+ EA      +P
Sbjct: 524 YFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMP 565



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 190/424 (44%), Gaps = 55/424 (12%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           ++LL   ++ ++    Q++HA ++K        L   L + Y+    L D+ ++F+ +  
Sbjct: 12  NSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSI-YSHINLLHDSLRLFNTLHF 70

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
              ++W ++I  Y+      ++L  FI ML S   P+   F +VL +CA      LG+ +
Sbjct: 71  PPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESL 130

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H  II+   +  +Y G++L++MY+K   + +                    SG  +LG  
Sbjct: 131 HGYIIRVGLDFDLYTGNALMNMYSKLRFLKK--------------------SGRQRLGAS 170

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTA-----LSGLAALGH-----GKQVHSHVLRFEI 291
           +   E+  +       +  V  ASVL       +S + A  +      ++  + VL  + 
Sbjct: 171 QVLDEMTER-------TRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDY 223

Query: 292 -PSYVVLQNSLIDMYSKCGSLTYS------RRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            P     +    ++  +   +++S      R++F+ M E+ ++SWN ++ G +++G+  E
Sbjct: 224 KPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGE 283

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHY 402
            + +   M   N +KPDS T  +VL   +    E+  ++   EI  C  + G + E+   
Sbjct: 284 TLTMVREMGGAN-LKPDSFTLSSVLPLIA----ENVDISKGKEIHGCSIRQGLDAEVYVA 338

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG-EFVGQRLM-EI 460
             ++DM  +  RV ++   +  +  E       S++  C  +   D G +F  Q LM +I
Sbjct: 339 SSLIDMYAKCTRVVDSYR-VFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKI 397

Query: 461 EPEN 464
           +P++
Sbjct: 398 KPKS 401


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 350/573 (61%), Gaps = 4/573 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            L+AC + R +  G+ +   ++ T       ++T L+  Y K    +DA  +F  M  R+
Sbjct: 67  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRD 126

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VV+W+AM++AY++  H  EAL LF +M      PN+ T  + L +CA       G  +H 
Sbjct: 127 VVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ 186

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +     +S + VG++L+++Y K GRI  A   F  + E++VV+ +AI + YA+   + +
Sbjct: 187 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRD 246

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH--SHVLRFEIPSYVVLQNSL 301
           AI +  ++ +EG++ N  T+ SVL A + +AAL  G+++H  + VL   + S V +  +L
Sbjct: 247 AIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTAL 306

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           ++MYSKCG+L  +  +FD ++   ++ WN+++   ++HG   + +ELF  MR E  ++P 
Sbjct: 307 VNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEG-LQPT 365

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+ +VL  CSH GM D+G   F   +    G  PE EH+GC+VD+LGRAG + ++ + 
Sbjct: 366 IITFTSVLFACSHAGMLDQGRKHFVSFIG-DHGIFPEAEHFGCMVDLLGRAGWIVDSEDL 424

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           + +MPFEP      + LGACR + N+D   +  + L +++P     YV+LSN+YA AGRW
Sbjct: 425 LLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRW 484

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            DV R+R+ M+     K+ GRSWIE+   +H F + D  HP   E+ A++++L+   KEA
Sbjct: 485 SDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEA 544

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+DV +E KE ++  HSEKLA+ F L+ TPEG+PIRV+KNLR+C DCH  +
Sbjct: 545 GYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTAS 604

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SK+  R++ +RD NRFH    G CSCGDYW
Sbjct: 605 KFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 162/317 (51%), Gaps = 3/317 (0%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR-MLRSDTEPNEFT 161
           Y++   +   RK FDEM   ++VSW A+I+AY      F+   LF R ML     P E  
Sbjct: 5   YSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGN-RDFDRCWLFFRGMLLQGINPGEVG 63

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +  L++C  A    +G+ I   I+ +  E    V ++L+ MY K G   +A  VF  + 
Sbjct: 64  ISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMS 123

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
            RDVV+ +A+++ YA+ G   EA+ LFR++ ++G+  N VT  S L A + L  L  G  
Sbjct: 124 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGAL 183

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H  V    I S VV+  +L+++Y KCG +  +   F  + E+ V++W+A+   Y+++  
Sbjct: 184 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDR 243

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            R+ + + + M  E  V P+S T+++VL  C+      +G  +         G E ++  
Sbjct: 244 NRDAIRVLHRMDLEGLV-PNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYV 302

Query: 402 YGCVVDMLGRAGRVGEA 418
              +V+M  + G +  A
Sbjct: 303 LTALVNMYSKCGNLALA 319



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH--AHMIKTCYRPPVYLR 96
           N    + L  M   GL      + ++L+AC     L+ G+R+H    ++       VY+ 
Sbjct: 244 NRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVL 303

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T L+  Y+KC  L+ A  MFD++   ++V W ++I+  +Q   + +AL LF RM     +
Sbjct: 304 TALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQ 363

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN--FESHIYVGSSLLDMYAKAGRIHEAR 214
           P   TF +VL +C+ A   + G++     I  +  F    + G  ++D+  +AG I ++ 
Sbjct: 364 PTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFG-CMVDLLGRAGWIVDSE 422

Query: 215 GVFECLP 221
            +   +P
Sbjct: 423 DLLLHMP 429


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/544 (41%), Positives = 329/544 (60%), Gaps = 34/544 (6%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV SW ++I+  ++   S EAL  F  M +   +PN  TF   + SC+       G+Q H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG--------------------------- 215
              +   FE  ++V S+L+DMY+K G + +AR                            
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 216 ----VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTAL 270
               VF+ + ERDV+S  +II+ YAQ G+  E++E+F ++  +G I+ N VT ++VL A 
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           +   +   GK +H  V++  + S V +  S+IDMY KCG +  +R+ FD M E+ V SW+
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+ GY  HG  +E +E+F  M     VKP+ +T+++VL+ CSH G+ + G   F  +  
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH 338

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             D  EP +EHYGC+VD+LGRAG + EA + IK M   P   + G+LLGACR+H NVD+G
Sbjct: 339 EFD-VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG 397

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E   ++L E++P+N G YV+LSN+YA AGRWEDV R+R LMK   + K PG S +++   
Sbjct: 398 EISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGR 457

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +H F   DR HP  E++   +++LS+K +E GYVPDM+ VL+DV  E+KE VL  HSEKL
Sbjct: 458 VHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKL 517

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FG++ T  G  I +IKNLR+C DCH   KF+SK+  R++ +RD  RFHH  +G CSC
Sbjct: 518 AVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSC 577

Query: 631 GDYW 634
           GDYW
Sbjct: 578 GDYW 581



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 38/326 (11%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +A   M  L L+     +   + +C     L  G++ H   +   + P +++ + L+  Y
Sbjct: 62  RAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMY 121

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISA------------------------------ 133
           +KC  L DAR +FDE+  RN+VSWT+MI+                               
Sbjct: 122 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIA 181

Query: 134 -YSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            Y+Q   S E++ +F RM++  +   N  T + VL +CA +    LGK IH  +IK   E
Sbjct: 182 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE 241

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S+++VG+S++DMY K G++  AR  F+ + E++V S +A+++GY   G  +EA+E+F ++
Sbjct: 242 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM 301

Query: 252 QVEGMISNYVTYASVLTALS--GLAALG-HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
            + G+  NY+T+ SVL A S  GL   G H  +  SH   F++   V     ++D+  + 
Sbjct: 302 NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH--EFDVEPGVEHYGCMVDLLGRA 359

Query: 309 GSLTYSRRVFDNMSER-TVISWNAML 333
           G L  +  +   M  R   + W A+L
Sbjct: 360 GYLKEAFDLIKGMKLRPDFVVWGALL 385



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +  + R G+ +H  +IK      V++ T +I  Y KC  +  ARK FD MRE+
Sbjct: 214 AVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK 273

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           NV SW+AM++ Y    H+ EAL +F  M  +  +PN  TF +VL +C+ A   E G    
Sbjct: 274 NVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWF 333

Query: 182 ----HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG 234
               H   ++   E +      ++D+  +AG + EA  + + +  R D V   A++  
Sbjct: 334 KAMSHEFDVEPGVEHY----GCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 387



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 17/120 (14%)

Query: 305 YSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           YS   +LT    +F+   ++T V SWN+++   ++ G   E +  F+ MR+ + +KP+  
Sbjct: 22  YSNNPNLT---TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS-LKPNRS 77

Query: 364 TYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           T+   +  CS     H G +    A+         GFEP++     +VDM  + G + +A
Sbjct: 78  TFPCAIKSCSALLDLHSGRQAHQQALIF-------GFEPDLFVSSALVDMYSKCGELRDA 130


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 370/615 (60%), Gaps = 47/615 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LLN+C    +L  G  VH+H+IK  +   +++R  LI  Y+    L+ AR +FDE  
Sbjct: 114 FPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESL 173

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++VS+  MI  Y++      AL LF  M  S   P+EFTF  + + C+      +GKQ
Sbjct: 174 VRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQ 233

Query: 181 IHSLIIKS--NFESHIYVGSSLLDMYAKAG------------------------------ 208
           IH+ + K+  + +S+I + S+++DMYAK G                              
Sbjct: 234 IHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYAR 293

Query: 209 --RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
              I+ AR +F  + ERDV+S TA+ISGY+Q G   EA+ELF++++  G+  + VT  +V
Sbjct: 294 CGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAV 353

Query: 267 LTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS----RRVFDNM 321
           L+A + L A   GK++ H ++         +L  +++DMY+KCGS+  +    RRV  NM
Sbjct: 354 LSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNM 413

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMRE--ENKVKPDSVTYLAVLSGCSHGGMED 379
             +T   +N+M+ G ++HG+G   + +F   RE     +KPD VT++ VL  C H G+ +
Sbjct: 414 --KTGFVFNSMIAGLAQHGLGETAITVF---RELISTGLKPDEVTFVGVLCACGHSGLIE 468

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            G  +F  + +   G +P++EHYGC+VD+LGR G + EA + ++ MPFE  + I  +LL 
Sbjct: 469 EGKKLFESMFNAY-GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLS 527

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           ACR H NV IGE  GQ+L+E+E ++   YV+LSN+ A A +WE+  +VR++M++  + K 
Sbjct: 528 ACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP 587

Query: 500 PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQK 559
           PG S+IEL   +H F ASD+SHP  +E+   +K ++++ K AGYVP+ + V++D+DEE+K
Sbjct: 588 PGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEK 647

Query: 560 EKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNR 619
           E V+  HSEKLAL FGL+       IR++KNLRIC DCH   K VS++YGR++++RD  R
Sbjct: 648 ESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMR 707

Query: 620 FHHIVEGTCSCGDYW 634
           FHH   G+CSC D+W
Sbjct: 708 FHHFRNGSCSCMDFW 722



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 216/423 (51%), Gaps = 50/423 (11%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN---KCECLSDARKMFDEMR 120
           LL +C   ++ + G ++HA  I       ++  +RLI F++     + L  +R +F ++ 
Sbjct: 15  LLESC---KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQID 71

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGK 179
             N+  W  MI  YS+  +  EA+ L++ M+ +    PN FTF  +L SCA     E G 
Sbjct: 72  CPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGH 131

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++HS IIK  FES ++V ++L+ +Y+  G ++ AR +F+    RD+VS   +I GYA++ 
Sbjct: 132 EVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVN 191

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVL 297
             E A+ LF ++Q  G++ +  T+ ++ +  S L     GKQ+H+ V +    I S ++L
Sbjct: 192 QPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILL 251

Query: 298 QNSLIDMYSK--------------------------------CGSLTYSRRVFDNMSERT 325
           +++++DMY+K                                CG +  +R++F++M ER 
Sbjct: 252 KSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERD 311

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           VISW AM+ GYS+ G   E +ELF  M E   +KPD VT +AVLS C+  G  D G  ++
Sbjct: 312 VISWTAMISGYSQAGQCSEALELFKEM-EALGIKPDEVTLVAVLSACARLGAFDLGKRLY 370

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI----KNMPFEPTAAILGSLLGAC 441
           H+ ++    F         V+DM  + G +  ALE      KNM    T  +  S++   
Sbjct: 371 HQYIE-NGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNM---KTGFVFNSMIAGL 426

Query: 442 RVH 444
             H
Sbjct: 427 AQH 429



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 130/309 (42%), Gaps = 43/309 (13%)

Query: 40  GQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV-HAHMIKTCYRPPVYL 95
           GQ ++AL    EM  LG++        +L+AC        G+R+ H ++    +     L
Sbjct: 326 GQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTIL 385

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
              ++  Y KC  +  A ++F  + +  +    + +MI+  +Q      A+ +F  ++ +
Sbjct: 386 TAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIST 445

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
             +P+E TF  VL +C  +   E GK++        FES                 +  A
Sbjct: 446 GLKPDEVTFVGVLCACGHSGLIEEGKKL--------FES-----------------MFNA 480

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
            G+    P+ +   C   + G  + G  EEA +L +K+  E   +N V + ++L+A    
Sbjct: 481 YGI---KPQMEHYGCMVDLLG--RYGCLEEAYDLVQKMPFE---ANSVIWRALLSACRTH 532

Query: 274 AALGHGKQVHSHVLRFEI---PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
             +  G+     +L  E      YV+L N L D  ++       R+V ++   R    W+
Sbjct: 533 GNVKIGEIAGQKLLEMEAQHGARYVLLSNILADA-NQWEEARQVRKVMEDHGIRKPPGWS 591

Query: 331 AMLVGYSKH 339
            + +G + H
Sbjct: 592 YIELGGAIH 600


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 346/574 (60%), Gaps = 3/574 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +L+ + V+ +  R G+  HA +IKT   P P ++   L+  Y+K +  + A+ +      
Sbjct: 11  SLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+VV+WTA+I+   Q      AL  F  M R   +PN+FTF     +        +GKQ+
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+L +K+   S ++VG S  DMY+KAG   EAR +F+ +PER++ +  A +S     G  
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY 190

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           ++A+  F + + EG+       +SVL+A +GL+ L  GK VH+  ++  +   + + ++L
Sbjct: 191 DDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSAL 250

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-EENKVKP 360
           +DMY KCGS+  + R FD M ER +++WNAM+ GY+  G     V LF+ M    ++V P
Sbjct: 251 VDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAP 310

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT++ VLS CS  G  + G+ +F E +  + G EP  EHY CVVD+LGRAG V +A +
Sbjct: 311 NYVTFVCVLSACSRAGSVNVGMEIF-ESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQ 369

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FIK MP  PT ++ G+LLGA ++    ++G+     L E++P ++GN+V+LSN++A+AGR
Sbjct: 370 FIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGR 429

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE+ T VR+ MK+  + K  G SWI     +H F A D SH    E+ A + +L  + + 
Sbjct: 430 WEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEA 489

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGY+PD S  L+D++EE+K   +  HSEK+AL FGLI  P G PIR+ KNLRIC DCH+ 
Sbjct: 490 AGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSA 549

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+S + GR++ +RD N FH   +  CSC DYW
Sbjct: 550 IKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 3/197 (1%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A IE    G+E       ++L+AC     L  G+ VH   +K C    +++ + L+  Y 
Sbjct: 196 AFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYG 255

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEPNEFTF 162
           KC  + DA + FDEM ERN+V+W AMI  Y+ +  +  A+ LF  M        PN  TF
Sbjct: 256 KCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTF 315

Query: 163 ATVLTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             VL++C+ A    +G +I  S+  +   E      + ++D+  +AG + +A    + +P
Sbjct: 316 VCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMP 375

Query: 222 ERDVVSCTAIISGYAQL 238
            R  VS    + G +++
Sbjct: 376 IRPTVSVWGALLGASKM 392


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 363/577 (62%), Gaps = 10/577 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T++  C N + L   +++H+ ++K  +     + T L+  Y+K   L +A  +F  M 
Sbjct: 309 YATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMS 368

Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             +NVVSWTAMI+   Q      A  LF RM      PN+FT++T+LT+   +    L  
Sbjct: 369 GSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS----LPP 424

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIH+ +IK+N+E    VG++LL  Y+K     EA  +F+ + ++DVVS +A+++ YAQ G
Sbjct: 425 QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 484

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTAL-SGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             + A  +F K+ + G+  N  T +SV+ A  S  A +  G+Q H+  ++      + + 
Sbjct: 485 DSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVS 544

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+ MY++ GS+  ++ +F+  ++R ++SWN+ML GY++HG  ++ +++F  M  E  +
Sbjct: 545 SALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEG-I 603

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGE 417
           + D VT+L+V+ GC+H G+ + G   F  +   +D G  P +EHY C+VD+  RAG++ E
Sbjct: 604 EMDGVTFLSVIMGCAHAGLVEEGQRYFDSMA--RDYGITPTMEHYACMVDLYSRAGKLDE 661

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A+  I+ M F     +  +LLGAC+VH NV++G+   ++L+ +EP ++  YV+LSN+Y++
Sbjct: 662 AMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSA 721

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+W++   VR+LM  K V K+ G SWI++   +H+F ASD+SHP+ E++ AK++ ++ K
Sbjct: 722 AGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTK 781

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+ GY PD S  L++V EEQKE +L  HSE+LAL FGLI TP GAP+ + KNLR+C DC
Sbjct: 782 LKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDC 841

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K VSK+  R++ +RD +RFHH   G CSCGD+W
Sbjct: 842 HTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 3/297 (1%)

Query: 77  GQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G+++H   I+  + R  V + T L+  Y K   + D RK+F+ M +RNVV+WT++++ Y 
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYI 181

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     + + LF RM      PN  TFA+VL+  A     +LG+++H+  +K    S ++
Sbjct: 182 QDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVF 241

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V +SL++MYAK G + EAR VF  +  RD+VS   +++G    G D EA++LF   +   
Sbjct: 242 VCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSI 301

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            +    TYA+V+   + +  LG  +Q+HS VL+    SY  +  +L+D YSK G L  + 
Sbjct: 302 TMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNAL 361

Query: 316 RVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
            +F  MS  + V+SW AM+ G  ++G       LF+ MRE+  V P+  TY  +L+ 
Sbjct: 362 DIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDG-VAPNDFTYSTILTA 417



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 190/373 (50%), Gaps = 11/373 (2%)

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTS 168
           + AR+ FDE+  RN +       A     H  +AL+ F+ + R             VL  
Sbjct: 55  TGARQAFDEIPHRNTLDHALFDHARRGSVH--QALDHFLDVHRCHGGRVGGGALVGVLKV 112

Query: 169 CAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C       LGKQ+H L I+   +   + VG+SL+DMY K   + + R VFE +P+R+VV+
Sbjct: 113 CGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVT 172

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++++GY Q G   + +ELF +++ EG+  N VT+ASVL+ ++    +  G++VH+  +
Sbjct: 173 WTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSV 232

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +F   S V + NSL++MY+KCG +  +R VF  M  R ++SWN ++ G   +G   E ++
Sbjct: 233 KFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQ 292

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIVDCKDGFEPEIEHYGCVV 406
           LF+  R    +   S TY  V+  C++  ++  GLA   H  V  K GF         ++
Sbjct: 293 LFHDSRSSITMLTQS-TYATVIKLCAN--IKQLGLARQLHSSV-LKRGFHSYGNVMTALM 348

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPEN 464
           D   +AG++G AL+    M          +++  C  + +V +   +  R+ E  + P +
Sbjct: 349 DAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPND 408

Query: 465 AGNYVILSNLYAS 477
                IL+   AS
Sbjct: 409 FTYSTILTASVAS 421



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 176/337 (52%), Gaps = 13/337 (3%)

Query: 45  ALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           AL ++  L   MR E        + ++L+   +Q  +  G+RVHA  +K      V++  
Sbjct: 185 ALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCN 244

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            L+  Y KC  + +AR +F  M  R++VSW  +++      H  EAL LF     S T  
Sbjct: 245 SLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITML 304

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
            + T+ATV+  CA      L +Q+HS ++K  F S+  V ++L+D Y+KAG++  A  +F
Sbjct: 305 TQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIF 364

Query: 218 ECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
             +   ++VVS TA+I+G  Q G    A  LF +++ +G+  N  TY+++LTA   +A+L
Sbjct: 365 LLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA--SVASL 422

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
               Q+H+ V++       ++  +L+  YSK  +   +  +F  + ++ V+SW+AML  Y
Sbjct: 423 --PPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCY 480

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++ G       +F  M     +KP+  T  +V+  C+
Sbjct: 481 AQAGDSDGATNIFIKMTMHG-LKPNEFTISSVIDACA 516


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 348/572 (60%), Gaps = 5/572 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           + AC      +G +  H+  IK       Y+   L+  Y +   L +A K+F+E+  +N 
Sbjct: 120 VKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS 179

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V W  MI  +   +  F    LF RM RS  E + F    ++ +C   +  + GK  H L
Sbjct: 180 VIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGL 239

Query: 185 IIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            IK NF +S+ ++ +SL+DMY K G +  A  +FE +  RDVV  +AII+G+A+ G   E
Sbjct: 240 CIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALE 299

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           +I +FR++  + +  N VT+AS++ A S L +L  G+ VH +++R  +   V    S ID
Sbjct: 300 SISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFID 359

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  + RVF  + E+ V SW+ M+ G+  HG+  E + LF  MR  N++ P+SV
Sbjct: 360 MYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQL-PNSV 418

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           T+++VLS CSH G  + G + F  +   +D G  P  EHY C+VD+LGRAG++ EAL FI
Sbjct: 419 TFVSVLSACSHSGRIEEGWSHFKSM--SRDYGITPVEEHYACMVDLLGRAGKIDEALSFI 476

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            NMP EP A+  G+LLGACR+H   ++ E V ++L+ +E + +G YV+LSN+YA  G WE
Sbjct: 477 NNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWE 536

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V + R  M EK + K  G + IE+++ L+ F + DR      ++ +    L  + +E G
Sbjct: 537 MVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELG 596

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD+  VL+DVD+E K++VL GHSEKLA+ FGL+ + EG PIR+ KN+R+C DCH  +K
Sbjct: 597 YVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASK 656

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+S +  RK+ +RD  RFHH+ +G CSCGDYW
Sbjct: 657 FISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 182/365 (49%), Gaps = 4/365 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL+     +TL    +++A ++       +     +   Y +   L  A K F+ +   
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE 76

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+ SW  +++++S+    ++ L LF RML+     + F     + +C G   F+  K  H
Sbjct: 77  NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 136

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           SL IK   E   YV  +L+++Y + G + EA  VFE +P ++ V    +I G+     + 
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEF 196

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSL 301
              ELF +++  G   +      ++ A   + A   GK  H   ++   I S   LQ SL
Sbjct: 197 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSL 256

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY KCG L ++ ++F+ +S R V+ W+A++ G++++G   E + +F  M  ++ V P+
Sbjct: 257 VDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADS-VTPN 315

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           SVT+ +++  CS  G   +G +V   ++  ++G E ++++Y   +DM  + G +  A   
Sbjct: 316 SVTFASIVLACSSLGSLKQGRSVHGYMI--RNGVELDVKNYTSFIDMYAKCGCIVTAYRV 373

Query: 422 IKNMP 426
              +P
Sbjct: 374 FCQIP 378



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 8/196 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++ AC +  +L+ G+ VH +MI+      V   T  I  Y KC C+  A ++F ++ 
Sbjct: 319 FASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP 378

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-- 178
           E+NV SW+ MI+ +       EALNLF  M   +  PN  TF +VL++C+ +   E G  
Sbjct: 379 EKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWS 438

Query: 179 --KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             K +      +  E H    + ++D+  +AG+I EA      +P     S    + G  
Sbjct: 439 HFKSMSRDYGITPVEEHY---ACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGAC 495

Query: 237 QLGLDEE-AIELFRKL 251
           ++    E A E+ +KL
Sbjct: 496 RIHRRAELAEEVAKKL 511


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 348/573 (60%), Gaps = 4/573 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            L+AC + R +  G+ +   ++ T       ++T L+  Y K    +DA  +F  M  R+
Sbjct: 82  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRD 141

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VV+W+AM++AY++  H  EAL LF +M      PN+ T  + L +CA       G  +H 
Sbjct: 142 VVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ 201

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +     +S + VG++L+++Y K GRI  A   F  + E++VV+ +AI + YA+   + +
Sbjct: 202 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRD 261

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS--HVLRFEIPSYVVLQNSL 301
           AI +  ++ +EG+  N  T+ SVL A + +AAL  G+++H   HVL   + S V +  +L
Sbjct: 262 AIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTAL 321

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           ++MYSKCG+L  +  +FD ++   ++ WN+++   ++HG   + +ELF  MR E  ++P 
Sbjct: 322 VNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEG-LQPT 380

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+ +VL  CSH GM D+G   F   +    G  PE EH+GC+VD+LGRAG + ++ + 
Sbjct: 381 IITFTSVLFACSHAGMLDQGRKHFVSFIG-DHGIFPEAEHFGCMVDLLGRAGWIVDSEDL 439

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           + +MPFEP      + LGACR + N+D   +  + L +++P     YV+LSN+YA AGRW
Sbjct: 440 LLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRW 499

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            DV R+R+ M+     K+ GRSWIE+   +H F + D  HP   E+ A++++L+   K A
Sbjct: 500 SDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAA 559

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+DV +E KE ++  HSEKLA+ F L+ TPEG+PIRV+KNLR+C DCH  +
Sbjct: 560 GYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTAS 619

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SK+  R++ +RD NRFH    G CSCGDYW
Sbjct: 620 KFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 169/326 (51%), Gaps = 3/326 (0%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR-MLR 152
           +L   LI  Y KC+   DA  +F  ++ +NV SWT M++A+++    F+   LF R ML 
Sbjct: 11  FLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAEN-RDFDRCWLFFRGMLL 69

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
               P E   +  L++C  A    +G+ I   I+ +  E    V ++L+ +Y K G   +
Sbjct: 70  QGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTD 129

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VF  +  RDVV+ +A+++ YA+ G   EA+ LFR++ ++G+  N VT  S L A + 
Sbjct: 130 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 189

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  L  G  +H  V    I S VV+  +L+++Y KCG +  +   F  + E+ V++W+A+
Sbjct: 190 LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAI 249

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
              Y+++   R+ + + + M  E  + P+S T+++VL  C+      +G  +   I    
Sbjct: 250 SAAYARNDRNRDAIRVLHRMDLEG-LAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLG 308

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEA 418
            G E ++     +V+M  + G +  A
Sbjct: 309 GGLESDVYVLTALVNMYSKCGNLALA 334



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH--AHMIKTCYRPPVYLR 96
           N    + L  M   GL      + ++L+AC     L+ G+R+H   H++       VY+ 
Sbjct: 259 NRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVL 318

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T L+  Y+KC  L+ A  MFD++   ++V W ++I+  +Q   + +AL LF RM     +
Sbjct: 319 TALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQ 378

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN--FESHIYVGSSLLDMYAKAGRIHEAR 214
           P   TF +VL +C+ A   + G++     I  +  F    + G  ++D+  +AG I ++ 
Sbjct: 379 PTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFG-CMVDLLGRAGWIVDSE 437

Query: 215 GVFECLP 221
            +   +P
Sbjct: 438 DLLLHMP 444


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/574 (37%), Positives = 350/574 (60%), Gaps = 2/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L  C +   +  G+++H+  IK  ++  +Y+   LI  Y+K   L  A+++ D + 
Sbjct: 348 YPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIE 407

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E++VVSWT+MI+ Y Q     EAL  F  M      P+    A+ +++CAG      G Q
Sbjct: 408 EKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ 467

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ +  S + + + + + L+ +YA+ G   EA   FE +  ++ ++   +ISG+AQ GL
Sbjct: 468 IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGL 527

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+++F K+   G   N  T+ S ++A + LA +  GKQ+H+ V++    S   + N+
Sbjct: 528 YEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNA 587

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI +Y KCGS+  ++  F  M++R  +SWN ++   S+HG G E ++LF+ M+++  +KP
Sbjct: 588 LISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQG-LKP 646

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
             VT++ VL+ CSH G+ + GL  F  + + + G  P  +HY CVVD+LGRAG++  A  
Sbjct: 647 SDVTFVGVLTACSHVGLVEEGLCYFKSMSN-EHGIHPRPDHYACVVDILGRAGQLDRAKR 705

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           F++ MP    + +  +LL AC+VH N++IGEF  + L+E+EP ++ +YV+LSN YA  G+
Sbjct: 706 FVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGK 765

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W    ++R++MK++ V K+PGRSWIE+  ++H F   DR HP+ +++   +  L+ +  +
Sbjct: 766 WASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYK 825

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GY  +   + ++ ++E K+     HSEKLA+ FGL+  P   P+RVIKNLR+C DCH +
Sbjct: 826 IGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTW 885

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF S V GR++ LRD  RFHH   G+CSCGDYW
Sbjct: 886 MKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 207/383 (54%), Gaps = 4/383 (1%)

Query: 37  CSNGQLTKALI-EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C +G     +  EM   GL        +LL AC     LR G+++H++++K        +
Sbjct: 222 CGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIM 281

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y K   + +A ++FD     NVV W  M+ AY Q     ++ ++F RML +  
Sbjct: 282 EGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGV 341

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN+FT+  +L +C       LG+QIHSL IK+ F+S +YV   L+DMY+K G + +A+ 
Sbjct: 342 RPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQR 401

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           + + + E+DVVS T++I+GY Q    +EA+E F+++Q  G+  + +  AS ++A +G+ A
Sbjct: 402 ILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKA 461

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G Q+H+ V      + V + N L+ +Y++CG    +   F+ +  +  I+WN ++ G
Sbjct: 462 VHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISG 521

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           +++ G+  E +++F  M ++   K +  T+++ +S  ++     +G  +   ++  K G+
Sbjct: 522 FAQSGLYEEALKVFMKM-DQAGAKYNVFTFVSSISASANLADIKQGKQIHARVI--KTGY 578

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA 418
             E E    ++ + G+ G + +A
Sbjct: 579 TSETEISNALISLYGKCGSIEDA 601



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 185/354 (52%), Gaps = 10/354 (2%)

Query: 72  RTLRGGQR-------VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           R  RG  R       +HA  I         +   LI  Y K   +  AR++F+E+  R+ 
Sbjct: 49  RACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDN 108

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW A++S Y+Q     EA+ L+  M RS   P  +  +++L++C     F+LG+ IH  
Sbjct: 109 VSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQ 168

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           + K  F S  +VG++L+ +Y +      A  VF  +   D V+   +ISG+AQ G  + A
Sbjct: 169 VYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRA 228

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + +F ++Q+ G+  + VT AS+L A S +  L  GKQ+HS++L+  +    +++ SL+D+
Sbjct: 229 LGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDL 288

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y K G +  + ++FD+     V+ WN MLV Y +     +  ++F  M     V+P+  T
Sbjct: 289 YVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAG-VRPNKFT 347

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           Y  +L  C+H G  + GL      +  K+GF+ ++   G ++DM  + G + +A
Sbjct: 348 YPCMLRTCTHTG--EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA 399



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 177/357 (49%), Gaps = 3/357 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC      + G+ +H  + K  +    ++   LI  Y +C     A ++F +M   
Sbjct: 148 SILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYC 207

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T A++L +C+       GKQ+H
Sbjct: 208 DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLH 267

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++K+       +  SLLD+Y K+G I EA  +F+     +VV    ++  Y Q+    
Sbjct: 268 SYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLA 327

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ ++F ++   G+  N  TY  +L   +    +G G+Q+HS  ++    S + +   LI
Sbjct: 328 KSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLI 387

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  ++R+ D + E+ V+SW +M+ GY +H   +E +E F  M +   + PD+
Sbjct: 388 DMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM-QACGIWPDN 446

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           +   + +S C+      +G  +   +     G+  ++  +  +V +  R G   EA 
Sbjct: 447 IGLASAISACAGIKAVHQGSQIHARVY--VSGYSADVSIWNGLVYLYARCGISKEAF 501



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 155/307 (50%), Gaps = 4/307 (1%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG-FEL 177
           M  R   S+   ++ +       + L LF    R         FA  L +C G+   + L
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +IH+  I      +  +G+ L+D+YAK G +  AR VFE L  RD VS  A++SGYAQ
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL EEA+ L+R++   G++      +S+L+A +       G+ +H  V +    S   +
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+LI +Y +C S   + RVF +M     +++N ++ G+++ G G   + +F+ M + + 
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM-QLSG 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PDSVT  ++L+ CS  G   +G  +   ++  K G   +    G ++D+  ++G + E
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLL--KAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 418 ALEFIKN 424
           AL+   +
Sbjct: 298 ALQIFDS 304



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  ++M   G +     + + ++A  N   ++ G+++HA +IKT Y     +   LI  Y
Sbjct: 533 KVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLY 592

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + DA+  F EM +RN VSW  +I+  SQ     EAL+LF +M +   +P++ TF 
Sbjct: 593 GKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFV 652

Query: 164 TVLTSCAGAFGFELGK-QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VLT+C+     E G     S+  +          + ++D+  +AG++  A+   E +P
Sbjct: 653 GVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMP 711


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/638 (35%), Positives = 367/638 (57%), Gaps = 68/638 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-- 120
            +L +C    +   G++VH+ ++K      V +   L+  Y K   L  A+ +FD M+  
Sbjct: 112 NVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR 171

Query: 121 -----------------------------ERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                                        ER++VSW +MI+  +Q     EAL  F  +L
Sbjct: 172 NTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231

Query: 152 RSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG-- 208
           +  + +P+ F+ A+ L++CA       GKQIH  I+++ F++   VG++L+ MYAK+G  
Sbjct: 232 KDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGV 291

Query: 209 ----RIHE---------------------------ARGVFECLPERDVVSCTAIISGYAQ 237
               RI E                           AR +F  L + DVV+ TA+I GY Q
Sbjct: 292 EIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQ 351

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL+ +AIE+F+ +  EG   N  T A++L+A S + +L HGKQ+H+  +R        +
Sbjct: 352 NGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSV 411

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
            N+L  MY+K GS+  +R+VF+ + + R  +SW +M++  ++HG+G E +ELF  M    
Sbjct: 412 GNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLG 471

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            +KPD +TY+ VLS C+HGG+ ++G + F +++      +P + HY C+VD+ GRAG + 
Sbjct: 472 -IKPDHITYVGVLSACTHGGLVEQGRSYF-DLMKNVHKIDPTLSHYACMVDLFGRAGLLQ 529

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA +F++NMP EP     GSLL +C+V+ NVD+ +   +RL+ IEP N+G Y  L+N+Y+
Sbjct: 530 EAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYS 589

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S G+W+D  ++R+LMK + V K+ G SW+++    H F   D  HP ++E+   + ++  
Sbjct: 590 SCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWK 649

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + K+ G+ PD   VL+D++ E K+++L  HSEKLA+ FG+I TPE   +R++KNLR+C D
Sbjct: 650 EIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCND 709

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CHN  KF+SK+  R++ +RD  RFHH  +G+CSC DYW
Sbjct: 710 CHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 177/381 (46%), Gaps = 68/381 (17%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y K   L  A ++FD +  R+ VSWT +I  Y+Q     +A+ +F+ M++    P +FT 
Sbjct: 51  YAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTL 110

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV------ 216
             VL SCA      +GK++HS ++K    + + V +SLL+MYAK G +  A+ V      
Sbjct: 111 TNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL 170

Query: 217 -------------------------FECLPERDVVSCTAIISGYAQLGLDEEAIELFRK- 250
                                    FE L ERD+VS  ++I+G  Q G D EA++ F   
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-- 308
           L+   +  +  + AS L+A + L  L  GKQ+H +++R    +   + N+LI MY+K   
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 309 -------------------------------GSLTYSRRVFDNMSERTVISWNAMLVGYS 337
                                          G +T +R++F+++ +  V++W AM+VGY 
Sbjct: 291 VEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYV 350

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++G+  + +E+F  M  E   +P+S T  A+LS  S     + G  +    +   +   P
Sbjct: 351 QNGLNNDAIEVFKTMVSEGP-RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSP 409

Query: 398 EIEHYGCVVDMLGRAGRVGEA 418
            + +   +  M  +AG +  A
Sbjct: 410 SVGN--ALTTMYAKAGSINGA 428



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 47/253 (18%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +++L  YAK G++ +A  VF+ +P RD VS T II GY Q+G  E+AI++F  +  + ++
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
               T  +VL + +   + G GK+VHS V++  + + V + NSL++MY+K G L  ++ V
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 318 FDNM-------------------------------SERTVISWNAMLVGYSKHGMGREVV 346
           FD M                               SER ++SWN+M+ G ++HG   E +
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           + F+ + ++  +KPD  +  + LS C++  +E             K  F  +I  Y  V 
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACAN--LE-------------KLSFGKQIHGY-IVR 268

Query: 407 DMLGRAGRVGEAL 419
            M   +G VG AL
Sbjct: 269 TMFDASGAVGNAL 281



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V L N+L+++Y+K G    +  +F+ M  +T  SWN +L GY+K G   +  ++F+L+  
Sbjct: 10  VYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPV 69

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
                 DSV++  ++ G +  G  +  + +F ++V  KD   P       V+      G 
Sbjct: 70  R-----DSVSWTTIIVGYNQMGRFEDAIKIFVDMV--KDKVLPTQFTLTNVLASCAATGS 122

Query: 415 VG---EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
            G   +   F+  +       +  SLL       ++ + + V  R+   +  N  ++  +
Sbjct: 123 RGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRM---KLRNTSSWNAM 179

Query: 472 SNLYASAGRWEDVTRVRELMKEKAV 496
            +L+ + GR +      EL+ E+ +
Sbjct: 180 ISLHMNCGRVDLALAQFELLSERDI 204


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 361/594 (60%), Gaps = 3/594 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G   +  I+M  LG+E+      ++L AC N   L  G+ +H   +K C+   V     
Sbjct: 277 SGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNT 336

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y+KC  L+ A ++F +M +  +VSWT++I+AY ++    +A+ LF  M      P+
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +T  +++ +CA +   + G+ +HS +IK+   S++ V ++L++MYAK G + EAR VF 
Sbjct: 397 IYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFS 456

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P +D+VS   +I GY+Q  L  EA+ELF  +Q +    + +T A VL A +GLAAL  
Sbjct: 457 KIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDK 515

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+++H H+LR    S + +  +L+DMY+KCG L  ++ +FD + ++ +ISW  M+ GY  
Sbjct: 516 GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGM 575

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G E +  FN MR    ++PD  ++ A+L+ CSH G+ + G   F+ + + + G EP+
Sbjct: 576 HGFGNEAISTFNEMRIAG-IEPDESSFSAILNACSHSGLLNEGWKFFNSMRN-ECGVEPK 633

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +EHY CVVD+L R G + +A +FI++MP +P   I G LL  CR+H++V + E V + + 
Sbjct: 634 LEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIF 693

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EP+N   YV+L+N+YA A +WE+V ++R+ M+++   ++PG SWIE+    + F A +
Sbjct: 694 ELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 753

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP  +++   + +L+++ +   Y      VL + D+ +KE +  GHSEK A+ FG++ 
Sbjct: 754 SKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILN 813

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            P G  +RV KN R+C DCH   KF+SK    ++ LRD NRFHH  +G CSC D
Sbjct: 814 LPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 212/397 (53%), Gaps = 7/397 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +RVH +++K  +     +   LI  Y K   +  A  +FDE+ E +VVSW +MI+     
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
             S   L +FI+ML    E +  T  +VL +CA      LG+ +H   +K+ F   +   
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFS 334

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++LLDMY+K G ++ A  VF  + +  +VS T+II+ Y + GL  +AI LF ++Q +G+ 
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVR 394

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T  S++ A +  ++L  G+ VHS+V++  + S + + N+LI+MY+KCGS+  +R V
Sbjct: 395 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 454

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +  + ++SWN M+ GYS++ +  E +ELF  M+++   KPD +T   VL  C+    
Sbjct: 455 FSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ--FKPDDITMACVLPACAGLAA 512

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            D+G  +   I+  + G+  ++ H  C +VDM  + G +  A      +P +   +    
Sbjct: 513 LDKGREIHGHIL--RRGYFSDL-HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 569

Query: 437 LLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILS 472
           + G     + N  I  F   R+  IEP+ +    IL+
Sbjct: 570 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN 606



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 209/429 (48%), Gaps = 8/429 (1%)

Query: 2   RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKT--LCSNGQLTKALIEMATLG--LEMR 57
           ++P++     S++  +             QN K    C  G L  A IE+ T     E+ 
Sbjct: 35  KQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKINKFCEMGDLRNA-IELLTKSKSYELG 93

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
              Y ++L  C  +++L  G+RVH+ +I         L  +L+  Y  C  L   RK+FD
Sbjct: 94  LNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFD 153

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           ++    V  W  ++S Y++  +  E+++LF +M +     N +TF  VL   A     + 
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 213

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            K++H  ++K  F S+  V +SL+  Y K G +  A  +F+ L E DVVS  ++I+G   
Sbjct: 214 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G     +E+F ++ + G+  +  T  SVL A + +  L  G+ +H   ++      VV 
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+L+DMYSKCG+L  +  VF  M + T++SW +++  Y + G+  + + LF+ M+ +  
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG- 392

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V+PD  T  +++  C+     D+G  V   ++  K+G    +     +++M  + G V E
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVI--KNGMGSNLPVTNALINMYAKCGSVEE 450

Query: 418 ALEFIKNMP 426
           A      +P
Sbjct: 451 ARLVFSKIP 459


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 362/626 (57%), Gaps = 38/626 (6%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           + +EM   G       + ++L +C     LR G+ VH  +++      +Y    L+  Y 
Sbjct: 92  SFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYA 151

Query: 105 KC-------------------------------ECL-----SDARKMFDEMRERNVVSWT 128
           K                                 C+        R++F+ M  ++VVS+ 
Sbjct: 152 KLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYN 211

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            +I+ Y+Q     +AL +   M  +D +P+ FT ++VL   +       GK+IH  +I+ 
Sbjct: 212 TIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK 271

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
             +S +Y+GSSL+DMYAK+ RI ++  VF  L  RD +S  ++++GY Q G   EA+ LF
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF 331

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           R++    +    V ++SV+ A + LA L  GKQ+H +VLR    S + + ++L+DMYSKC
Sbjct: 332 RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKC 391

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G++  +R++FD M+    +SW A+++G++ HG G E V LF  M+ +  VKP+ V ++AV
Sbjct: 392 GNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG-VKPNQVAFVAV 450

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L+ CSH G+ D     F+ +     G   E+EHY  V D+LGRAG++ EA  FI  M  E
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVY-GLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 509

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           PT ++  +LL +C VH N+++ E V +++  ++ EN G YV++ N+YAS GRW+++ ++R
Sbjct: 510 PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLR 569

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
             M++K + K P  SWIE+    H F + DRSHP  ++++  +K +  + ++ GYV D S
Sbjct: 570 LRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTS 629

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
            VL+DVDEE K ++L GHSE+LA+ FG+I T  G  IRV KN+RIC DCH   KF+SK+ 
Sbjct: 630 GVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKIT 689

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
            R++ +RD +RFHH   G CSCGDYW
Sbjct: 690 EREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 196/417 (47%), Gaps = 46/417 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV-FYNKCECLSDARKMFDEMRE 121
           TL+      ++    +++HA  I+T  +   +    +++  Y   + L +A  +F  ++ 
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRT--QSLSHTSASIVISIYTNLKLLHEALLLFKTLKS 67

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
             V++W ++I  ++ ++   +AL  F+ M  S   P+   F +VL SC        G+ +
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAK-----------------------AGR--------- 209
           H  I++   +  +Y G++L++MYAK                       +G          
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187

Query: 210 ----IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
               I   R VFE +P +DVVS   II+GYAQ G+ E+A+ + R++    +  +  T +S
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL   S    +  GK++H +V+R  I S V + +SL+DMY+K   +  S RVF  +  R 
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
            ISWN+++ GY ++G   E + LF  M    KVKP +V + +V+  C+H      G  + 
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTA-KVKPGAVAFSSVIPACAHLATLHLGKQLH 366

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLL 438
             ++  + GF   I     +VDM  + G +  A +    M        TA I+G  L
Sbjct: 367 GYVL--RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 101/185 (54%), Gaps = 16/185 (8%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    +M T  ++     + +++ AC +  TL  G+++H ++++  +   +++
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y+KC  +  ARK+FD M   + VSWTA+I  ++   H  EA++LF  M R   
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440

Query: 156 EPNEFTFATVLTSCAG------AFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           +PN+  F  VLT+C+       A+G F    +++ L    N E   Y  +++ D+  +AG
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL----NQELEHY--AAVADLLGRAG 494

Query: 209 RIHEA 213
           ++ EA
Sbjct: 495 KLEEA 499


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 350/588 (59%), Gaps = 32/588 (5%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV----------- 125
           G+++H  +IK  +   + + + L+  Y+K  C+SDA+K+F  + +RN V           
Sbjct: 155 GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLA 214

Query: 126 -------------------SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
                              SW+AMI   +Q     EA+  F  M     + +++ F +VL
Sbjct: 215 CGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVL 274

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C G      G+QIH+ II++N + HIYVGS+L+DMY K   +H A+ VF+ + +++VV
Sbjct: 275 PACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 334

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S TA++ GY Q G   EA+++F  +Q  G+  ++ T    ++A + +++L  G Q H   
Sbjct: 335 SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKA 394

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           +   +  Y+ + NSL+ +Y KCG +  S R+F+ M+ R  +SW AM+  Y++ G   E +
Sbjct: 395 ITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAI 454

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +LF+ M +   +KPD VT   V+S CS  G+ ++G   F  +++ + G  P   HY C++
Sbjct: 455 QLFDKMVQLG-LKPDGVTLTGVISACSRAGLVEKGQRYFELMIN-EYGIVPSNGHYSCMI 512

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+  R+GR+ EA+ FI  MPF P A    +LL ACR   N++IG++  + L+E++P +  
Sbjct: 513 DLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPA 572

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            Y +LS++YAS G+W+ V ++R  MKEK V K+PG+SWI+    LH+F A D S P  ++
Sbjct: 573 GYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQ 632

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+++L  K  + GY PD S V +DV+E  K K+L  HSE+LA+ FGLI  P G PIR
Sbjct: 633 IYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIR 692

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V KNLR+CVDCHN  K +S V GR++ +RD  RFH   +GTCSCGD+W
Sbjct: 693 VGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 165/310 (53%), Gaps = 13/310 (4%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +K L  NG   +A+    EM   GL+M    + ++L AC     +  G+++HA +I+T  
Sbjct: 239 IKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNL 298

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +  +Y+ + LI  Y KC+CL  A+ +FD M+++NVVSWTAM+  Y Q   + EA+ +F+ 
Sbjct: 299 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLD 358

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M RS  +P+ +T    +++CA     E G Q H   I +    +I V +SL+ +Y K G 
Sbjct: 359 MQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGD 418

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I ++  +F  +  RD VS TA++S YAQ G   EAI+LF K+   G+  + VT   V++A
Sbjct: 419 IDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISA 478

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMSER 324
            S    +  G++         I  Y ++ ++     +ID++S+ G +  +    + M  R
Sbjct: 479 CSRAGLVEKGQR----YFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFR 534

Query: 325 -TVISWNAML 333
              I W  +L
Sbjct: 535 PDAIGWTTLL 544



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           M SNY  Y++ +    GL A  H K +H +++R        L N+++  Y+   S  Y+R
Sbjct: 1   MASNY--YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYAR 58

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           RVFD + +  + SWN +L+ YSK G   E+   F  + +      D VT+  ++ G S  
Sbjct: 59  RVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDR-----DGVTWNVLIEGYSLS 113

Query: 376 GMEDRGLAVFHEIV 389
           G+    +  ++ ++
Sbjct: 114 GLVGAAVKAYNTMM 127


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/510 (43%), Positives = 334/510 (65%), Gaps = 4/510 (0%)

Query: 127 WTAMISAYSQKAHSFE-ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           +  +I AY+Q  HS + AL L+  ML     PN+FT+  VL +CAG     LG+ +H  +
Sbjct: 99  FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSV 158

Query: 186 IKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           +K  F+  I+V ++++ MY+  AG I+ AR VF+ +P+ D V+ +A+I GYA++G   EA
Sbjct: 159 VKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEA 218

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR++Q+  +  + +T  S+L+A + L AL  GK + +++ R EI   V + N+LIDM
Sbjct: 219 VALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDM 278

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           ++KCG ++ + ++F  M+E+T++SW +++VG + HG G+E   LF  M     V PD V 
Sbjct: 279 FAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSG-VAPDDVA 337

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ +LS CSH G+ +RG   F  ++  K    P+IEHYGC+VDM  R G V EALEF++N
Sbjct: 338 FIGLLSACSHSGLVERGREYFGSMMK-KYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRN 396

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP EP   IL +L+ ACR H    +GE + + LM+ EP +  NYV+LSN+YA    WE  
Sbjct: 397 MPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKK 456

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           T++RE+M+ K + K PG + IE+D  ++ F A D+SH   +E+   V ++  + K++GY 
Sbjct: 457 TKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYR 516

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P  S VL D++EE KE  L  HSEKLA+ FGL+ TP G PIR++KNLR+C DCH+ +KF+
Sbjct: 517 PSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFI 576

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SK+Y R++ +RD+NRFHH   G CSCGD+W
Sbjct: 577 SKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 157/301 (52%), Gaps = 8/301 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC-LSDARKMFDEM 119
           Y  +L AC     L  GQ VH  ++K  +   ++++  ++  Y+ C   ++ ARK+FDEM
Sbjct: 135 YPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEM 194

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            + + V+W+AMI  Y++   S EA+ LF  M  ++  P+E T  ++L++C      ELGK
Sbjct: 195 PKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGK 254

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            I + I +      + V ++L+DM+AK G I +A  +F  + E+ +VS T++I G A  G
Sbjct: 255 WIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHG 314

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQ 298
             +EA  LF ++   G+  + V +  +L+A S    +  G++    ++ ++++   +   
Sbjct: 315 RGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHY 374

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELFNLMRE 354
             ++DMY + G +  +     NM  E   +    ++     HG   +G ++ +L  LM+ 
Sbjct: 375 GCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKL--LMKH 432

Query: 355 E 355
           E
Sbjct: 433 E 433


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/540 (42%), Positives = 341/540 (63%), Gaps = 18/540 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS A+++F+E   R+V +WTAM+S Y Q     EA   F  M       N
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVKN 293

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES----HIYVGSSLLDMYAKAGRIHEAR 214
           E ++  +L       G+   K++  +I    FE+    +I   ++++  Y + G I +AR
Sbjct: 294 EISYNAMLA------GYVQYKKM--VIAGELFEAMPCRNISSWNTMITGYGQNGGIAQAR 345

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +F+ +P+RD VS  AIISGYAQ G  EEA+ +F +++ +G  SN  T++  L+  + +A
Sbjct: 346 KLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIA 405

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GKQVH  V++    +   + N+L+ MY KCGS   +  VF+ + E+ V+SWN M+ 
Sbjct: 406 ALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIA 465

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY++HG GR+ + LF  M++   VKPD +T + VLS CSH G+ DRG   F+ + D    
Sbjct: 466 GYARHGFGRQALVLFESMKKAG-VKPDEITMVGVLSACSHSGLIDRGTEYFYSM-DRDYN 523

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            +P  +HY C++D+LGRAGR+ EA   ++NMPF+P AA  G+LLGA R+H N ++GE   
Sbjct: 524 VKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAA 583

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + + ++EP+N+G YV+LSNLYA++GRW DV ++R  M+E  V K  G SW+E+   +HTF
Sbjct: 584 EMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTF 643

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
              D  HP ++ + A +++L +K +  GYV     VL+DV+EE+KE +L  HSEKLA+ F
Sbjct: 644 SVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 703

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G++  P G PIRV+KNLR+C DCHN  K +SK+ GR + LRD +RFHH  EG CSCGDYW
Sbjct: 704 GILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 138/331 (41%), Gaps = 67/331 (20%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRE------------------------------- 121
           V+  T ++  Y +   + +ARK FDEM                                 
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLF-------------------------------IRM 150
           RN+ SW  MI+ Y Q     +A  LF                               + M
Sbjct: 323 RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            R     N  TF+  L++CA     ELGKQ+H  ++K+ FE+  +VG++LL MY K G  
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGST 442

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EA  VFE + E+DVVS   +I+GYA+ G   +A+ LF  ++  G+  + +T   VL+A 
Sbjct: 443 DEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502

Query: 271 SGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVIS 328
           S    +  G +    + R + +         +ID+  + G L  +  +  NM  +    S
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS 562

Query: 329 WNAMLVGYSKHG---MGREVVELFNLMREEN 356
           W A+L     HG   +G +  E+   M  +N
Sbjct: 563 WGALLGASRIHGNTELGEKAAEMVFKMEPQN 593



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 21/271 (7%)

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           + ++ ++V+W   IS++ +  H   AL +F  M R  +     ++  +++       F L
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSS----VSYNAMISGYLRNAKFSL 95

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            + +   +     E  ++  + +L  Y +  R+ EA  +F+ +P++DVVS  A++SGYAQ
Sbjct: 96  ARDLFDKMP----ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQ 151

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  +EA E+F K+       N +++  +L A      L   +++      +E+ S+   
Sbjct: 152 NGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWELISW--- 204

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N L+  Y K   L  +R++FD M  R VISWN M+ GY++ G   +   LFN    E+ 
Sbjct: 205 -NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN----ESP 259

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           ++ D  T+ A++SG    GM D     F E+
Sbjct: 260 IR-DVFTWTAMVSGYVQNGMVDEARKYFDEM 289



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 157/331 (47%), Gaps = 39/331 (11%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y +   L +A K+FD M +++VVSW AM+S Y+Q     EA  +F +M       N
Sbjct: 114 MLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM----PHRN 169

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L +       +  +++     +SN+E  +   + L+  Y K   + +AR +F+
Sbjct: 170 SISWNGLLAAYVHNGRLKEARRLFE--SQSNWE--LISWNCLMGGYVKRNMLGDARQLFD 225

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYVTYASVLTA--- 269
            +P RDV+S   +ISGYAQ+G   +A  LF +  +        M+S YV    V  A   
Sbjct: 226 RMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKY 285

Query: 270 ---------LSGLAALGHGKQVHSHVLRFEIPSYVVLQ-----NSLIDMYSKCGSLTYSR 315
                    +S  A L    Q    V+  E+   +  +     N++I  Y + G +  +R
Sbjct: 286 FDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQAR 345

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++FD M +R  +SW A++ GY+++G   E + +F  M+ + +    S T+   LS C+  
Sbjct: 346 KLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRS-TFSCALSTCADI 404

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
              + G  V  ++V  K GFE      GC V
Sbjct: 405 AALELGKQVHGQVV--KAGFET-----GCFV 428



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 19/277 (6%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL   +EM   G       +   L+ C +   L  G++VH  ++K  +    ++
Sbjct: 369 NGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFV 428

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC    +A  +F+ + E++VVSW  MI+ Y++     +AL LF  M ++  
Sbjct: 429 GNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGV 488

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           +P+E T   VL++C+ +   + G +  +S+    N +      + ++D+  +AGR+ EA 
Sbjct: 489 KPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAE 548

Query: 215 GVFECLP-ERDVVSCTAI-----ISGYAQLGLDEEAIELFRKL--QVEGMISNYVTYASV 266
            +   +P +    S  A+     I G  +LG  E+A E+  K+  Q  GM   YV  +++
Sbjct: 549 NLMRNMPFDPGAASWGALLGASRIHGNTELG--EKAAEMVFKMEPQNSGM---YVLLSNL 603

Query: 267 LTALSGLAALG--HGKQVHSHVLRFEIPSYVVLQNSL 301
             A      +G    K   + V +    S+V +QN +
Sbjct: 604 YAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKI 640


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/634 (36%), Positives = 368/634 (58%), Gaps = 24/634 (3%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE 60
           + + + Q+    + + +Q+    P   PN       CS                E ++  
Sbjct: 18  LTKSQHQNPIIKTQSLSQEGTITPQNSPN-----RFCS----------------EKKYGH 56

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
              LL +    R+L  GQ++HAH+IK+  +    +   LI FY+K +    + ++F+E  
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++  +W+++IS+++Q      A+  F RM+  +  P++  F +   +CA     ++GK 
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS 176

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L+IK+ ++  ++VGSSL+DMYAK G I EAR VF+ +P R+VVS + +I GY QLG 
Sbjct: 177 VHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGE 236

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ LF++  +EG+  N  T +SV+        L  GKQ+H    +        + +S
Sbjct: 237 HEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSS 296

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI +YSKCG +  + RVFD +  + +  WNAML+  ++H   +E  +LF  M E   ++P
Sbjct: 297 LISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKM-ENAGMRP 355

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L VL  CSH G+ + G   F  +   K   EP  +HY  +VD+LGRAG++ EAL 
Sbjct: 356 NFITFLCVLYACSHAGLVEEGKKYFALMK--KYEIEPGTQHYASMVDLLGRAGKLQEALS 413

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            IK MP EPT ++ G+ +  CR+H N D+  F   ++ E+   ++G +V+LSN YA+AGR
Sbjct: 414 VIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGR 473

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           +ED  + R++++++ V K+ G SWIE    +H F A DR H   +E+  K++ L  + + 
Sbjct: 474 YEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMER 533

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGYV D S VL +V  E+K + +  HSE+LA+ FGLI  P G PIR++KNLR+C DCHN 
Sbjct: 534 AGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNA 593

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KF+SK+ GR + +RD NRFH   +G CSC DYW
Sbjct: 594 IKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/700 (33%), Positives = 392/700 (56%), Gaps = 86/700 (12%)

Query: 16  FTQQQLTVPSFP-PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYD---------TLL 65
           F    L + S P P   +  +L     LTKA +   ++G+  R   +           L 
Sbjct: 66  FNDADLVLQSIPDPTIYSFSSLIY--ALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLF 123

Query: 66  NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER--- 122
             C      + G+++H     +      +++  +   Y +C  + DARK+FD M ++   
Sbjct: 124 KVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVV 183

Query: 123 --------------------------------NVVSWTAMISAYSQKAHSFEALNLFIRM 150
                                           N+VSW  ++S +++  +  EA+ +F ++
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                 P++ T ++VL S   +    +G+ IH  +IK        V S+++DMY K+G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 211 H-------------------------------EARGVFECLPER----DVVSCTAIISGY 235
           +                               +A  +FE   E+    +VVS T+II+G 
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           AQ G D EA+ELFR++QV G+  N+VT  S+L A   +AALGHG+  H   +R  +   V
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMRE 354
            + ++LIDMY+KCG +  S+ VF+ M  + ++ WN+++ G+S HG  +EV+ +F +LMR 
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR- 482

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             ++KPD +++ ++LS C   G+ D G   F +++  + G +P +EHY C+V++LGRAG+
Sbjct: 483 -TRLKPDFISFTSLLSACGQVGLTDEGWKYF-KMMSEEYGIKPRLEHYSCMVNLLGRAGK 540

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA + IK MPFEP + + G+LL +CR+  NVD+ E   ++L  +EPEN G YV+LSN+
Sbjct: 541 LQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNI 600

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA+ G W +V  +R  M+   + K+PG SWI++   ++T  A D+SHP  ++++ K+ ++
Sbjct: 601 YAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEI 660

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
           S + +++G+ P++   L+DV+E+++E++L GHSEKLA+ FGL+ TP+G P++VIKNLRIC
Sbjct: 661 SKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRIC 720

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH   KF+S   GR++ +RD NRFHH  +G CSCGD+W
Sbjct: 721 GDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 169/345 (48%), Gaps = 36/345 (10%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           + HA ++K+  +   Y+  +LI  Y+   C +DA  +   + +  + S++++I A ++  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +++ +F RM      P+      +   CA    F++GKQIH +   S  +   +V  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTA---------------------------- 230
           S+  MY + GR+ +AR VF+ + ++DVV+C+A                            
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 231 -------IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
                  I+SG+ + G  +EA+ +F+K+   G   + VT +SVL ++     L  G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            +V++  +     + +++IDMY K G +     +F+          NA + G S++G+  
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           + +E+F L +E+  ++ + V++ ++++GC+  G +   L +F E+
Sbjct: 336 KALEMFELFKEQT-MELNVVSWTSIIAGCAQNGKDIEALELFREM 379


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/545 (43%), Positives = 348/545 (63%), Gaps = 11/545 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           ++  Y++   LS+AR++F EM E   R+ VSW AMI A  Q     EA+ LF  M+R   
Sbjct: 180 VLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGL 239

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEAR 214
           + + FT A+VLT+         G+Q H ++IKS F  + +VGS L+D+Y+K AG + E R
Sbjct: 240 KVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECR 299

Query: 215 GVFECLPERDVVSCTAIISGYAQL-GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
            VFE +   D+V    +ISG++    L E+ +  FR++Q  G   +  ++  V +A S L
Sbjct: 300 KVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNL 359

Query: 274 AALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           ++   GKQVH+  ++ ++P + V + N+L+ MYSKCG++  +RRVFD M E   +S N+M
Sbjct: 360 SSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSM 419

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++HG+  E + LF LM E++ + P+S+T++AVLS C H G  + G   F+ + + +
Sbjct: 420 IAGYAQHGVEVESLRLFELMLEKD-IAPNSITFIAVLSACVHTGKVEEGQKYFNMMKE-R 477

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EPE EHY C++D+LGRAG++ EA   I+ MPF P +    +LLGACR H NV++   
Sbjct: 478 FCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVK 537

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
                + +EP NA  YV+LSN+YASA RWE+   V+ LM+E+ V K PG SWIE+D+ +H
Sbjct: 538 AANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVH 597

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY---DVDEEQKEKVLLGHSEK 569
            F A D SHPM +E+   + ++  K K+AGYVPD+   L    +V+ +++E+ LL HSEK
Sbjct: 598 VFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEK 657

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGLI T EG PI V+KNLRIC DCHN  K +S + GR++++RD +RFH   EG CS
Sbjct: 658 LAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCS 717

Query: 630 CGDYW 634
           C DYW
Sbjct: 718 CRDYW 722



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 223/480 (46%), Gaps = 50/480 (10%)

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---- 111
           ++ + +  LL AC+ QR L  G+ +HA   K+   P  YL     + Y+KC  L +    
Sbjct: 7   LQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTS 66

Query: 112 ---------------------------ARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
                                      AR++FDE+ + ++VS+  +I+AY+ +      L
Sbjct: 67  FHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTL 126

Query: 145 NLF--IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
            LF  +R LR   +   FT + V+T+C    G  L +Q+H  ++    + +  V +++L 
Sbjct: 127 RLFEEVRELRLGLDG--FTLSGVITACGDDVG--LVRQLHCFVVVCGHDCYASVNNAVLA 182

Query: 203 MYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
            Y++ G + EAR VF  + E   RD VS  A+I    Q     EA+ LFR++   G+  +
Sbjct: 183 CYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVD 242

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-GSLTYSRRVF 318
             T ASVLTA + +  L  G+Q H  +++        + + LID+YSKC GS+   R+VF
Sbjct: 243 MFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVF 302

Query: 319 DNMSERTVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           + ++   ++ WN M+ G+S +  +  + +  F  M + N  +PD  +++ V S CS+   
Sbjct: 303 EEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREM-QRNGFRPDDCSFVCVTSACSNLSS 361

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
              G  V H +    D     +     +V M  + G V +A      MP   T ++   +
Sbjct: 362 PSLGKQV-HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMI 420

Query: 438 LGACRVHYNVDIGEFVGQRLM---EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            G     + V++       LM   +I P N+  ++ + +     G+ E+  +   +MKE+
Sbjct: 421 AG--YAQHGVEVESLRLFELMLEKDIAP-NSITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 162/298 (54%), Gaps = 5/298 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   GL++      ++L A    + L GG++ H  MIK+ +    ++ + LI  Y+KC 
Sbjct: 233 EMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCA 292

Query: 108 -CLSDARKMFDEMRERNVVSWTAMISAYS-QKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
             + + RK+F+E+   ++V W  MIS +S  +  S + L  F  M R+   P++ +F  V
Sbjct: 293 GSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCV 352

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
            ++C+      LGKQ+H+L IKS+   + + V ++L+ MY+K G +H+AR VF+ +PE +
Sbjct: 353 TSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN 412

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            VS  ++I+GYAQ G++ E++ LF  +  + +  N +T+ +VL+A      +  G++  +
Sbjct: 413 TVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN 472

Query: 285 HVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
            +  RF I       + +ID+  + G L  + R+ + M      I W  +L    KHG
Sbjct: 473 MMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHG 530


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 351/600 (58%), Gaps = 5/600 (0%)

Query: 39  NGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+ T AL   + +    ++     +     A  + R+   G++VHA  +K      V++
Sbjct: 86  NGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFV 145

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
                  Y+K     +ARKMFDEM ERN+ +W A +S    +    +AL  FI       
Sbjct: 146 GCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGW 205

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EPN  TF   L +CAGA    LG+Q+H  +++S FE+ + V + L+D Y K  ++  +  
Sbjct: 206 EPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEI 265

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  + + + VS  ++I  Y Q   +E+A  +F + + EG+       +SVL+A +GL+ 
Sbjct: 266 IFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSV 325

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  GK VH+  ++  +   + + ++L+DMY KCGS+  + R FD M ER +++WNAM+ G
Sbjct: 326 LEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGG 385

Query: 336 YSKHGMGREVVELFNLMR-EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           Y+  G     V LF+ M    ++V P+ VT++ VLS CS  G  + G+ +F E +  + G
Sbjct: 386 YAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIF-ESMRGRYG 444

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP  EHY CVVD+LGRAG V +A +FIK MP  PT ++ G+LLGA ++    ++G+   
Sbjct: 445 IEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAA 504

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
             L E++P ++GN+V+LSN++A+AGRWE+ T VR+ MK+  + K  G SWI     +H F
Sbjct: 505 DNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVF 564

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
            A D SH    E+ A + +L  + + AGY+PD S  L+D++EE+K   +  HSEK+AL F
Sbjct: 565 QAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAF 624

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GLI  P G PIR+ KNLRIC DCH+  KF+S + GR++ +RD N FH   +  CSC DYW
Sbjct: 625 GLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 6/366 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +L+ + V+ +  R G+  HA +IKT   P P ++   L+  Y+K +  + A+ +      
Sbjct: 11  SLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+VV+WTA+I+   Q      AL  F  M R   +PN+FTF     +        +GKQ+
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+L +K+   S ++VG S  DMY+KAG   EAR +F+ +PER++ +  A +S     G  
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY 190

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           ++A+  F + + EG   N +T+ + L A +G + L  G+Q+H  VL+    + V + N L
Sbjct: 191 DDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGL 250

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           ID Y KC  +  S  +F  +S+   +SW +M+V Y ++    +   +F   R+E  ++P 
Sbjct: 251 IDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEG-IEPT 309

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVD-CKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
                +VLS C+   + + G +V    V  C  G    I     +VDM G+ G + +A  
Sbjct: 310 DFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG---NIFVGSALVDMYGKCGSIEDAER 366

Query: 421 FIKNMP 426
               MP
Sbjct: 367 AFDEMP 372


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 365/592 (61%), Gaps = 3/592 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  +EM   GL         LL AC      + G   H++++       V++ T L+  Y
Sbjct: 232 QMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMY 291

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           +       A  +FD M  R+++SW AMIS Y Q     E+  LF R+++S +  +  T  
Sbjct: 292 SNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLV 351

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +++  C+     E G+ +HS II+   ESH+ + ++++DMY+K G I +A  VF  + ++
Sbjct: 352 SLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKK 411

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V++ TA++ G +Q G  E+A++LF ++Q E + +N VT  S++   + L +L  G+ VH
Sbjct: 412 NVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVH 471

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN-MSERTVISWNAMLVGYSKHGMG 342
           +H +R       V+ ++LIDMY+KCG +  + ++F+N    + VI  N+M++GY  HG G
Sbjct: 472 AHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHG 531

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           R  + +++ M EE ++KP+  T++++L+ CSH G+ + G A+FH +    D   P+ +HY
Sbjct: 532 RYALGVYSRMIEE-RLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHD-VRPQHKHY 589

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            C+VD+  RAGR+ EA E +K MPF+P+  +L +LL  CR H N ++G  +  RL+ ++ 
Sbjct: 590 ACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDY 649

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
            N+G YV+LSN+YA A +WE V  +R LM+ + + K PG S IE+   ++TF ASD SHP
Sbjct: 650 LNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHP 709

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              ++   ++ L ++ +  GY+PD SCVL DV+E  K K+L GHSE+LA+ FGL+ TP G
Sbjct: 710 SWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCG 769

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + I++ KNLR+CVDCHN  K++SK+  R++ +RD NRFHH V G CSC D+W
Sbjct: 770 SLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 199/360 (55%), Gaps = 3/360 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC +      G  +    ++  +   +Y+ + ++ F  K   L+DA+K+FD M E++V
Sbjct: 152 LKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDV 211

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V W ++I  Y QK   +E++ +F+ M+     P+  T A +L +C  +   ++G   HS 
Sbjct: 212 VCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSY 271

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           ++     + ++V +SL+DMY+  G    A  VF+ +  R ++S  A+ISGY Q G+  E+
Sbjct: 272 VLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPES 331

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
             LFR+L   G   +  T  S++   S  + L +G+ +HS ++R E+ S++VL  +++DM
Sbjct: 332 YALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDM 391

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCG++  +  VF  M ++ VI+W AMLVG S++G   + ++LF  M+EE KV  +SVT
Sbjct: 392 YSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEE-KVAANSVT 450

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            ++++  C+H G   +G  V    +     F+  I     ++DM  + G++  A +   N
Sbjct: 451 LVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNN 508



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 212/437 (48%), Gaps = 12/437 (2%)

Query: 58  FEEYDTLLNACVNQ--RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM 115
           F +  ++ ++ ++Q   TL   + +HA +IK       +L  +LI  Y+    L  AR +
Sbjct: 42  FNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNV 101

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           FD+          AMI+ + +     E   LF  M   D E N +T    L +C      
Sbjct: 102 FDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDD 161

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           E+G +I    ++  F  H+YVGSS+++   K G + +A+ VF+ +PE+DVV   +II GY
Sbjct: 162 EVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGY 221

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPS 293
            Q GL  E+I++F ++   G+  + VT A++L A   SGL  +G     HS+VL   + +
Sbjct: 222 VQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG--MCAHSYVLALGMGN 279

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            V +  SL+DMYS  G    +  VFD+M  R++ISWNAM+ GY ++GM  E   LF  + 
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
           +      DS T ++++ GCS     + G  + H  +  K+  E  +     +VDM  + G
Sbjct: 340 QSGS-GFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKE-LESHLVLSTAIVDMYSKCG 396

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
            + +A      M  +        L+G  +  Y  D  +   Q  M+ E + A N V L +
Sbjct: 397 AIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQ--MQ-EEKVAANSVTLVS 453

Query: 474 LYASAGRWEDVTRVREL 490
           L         +T+ R +
Sbjct: 454 LVHCCAHLGSLTKGRTV 470


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 362/678 (53%), Gaps = 70/678 (10%)

Query: 25  SFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84
           S P   Q    L   G + +    M T G+        T++  C     L+ G+++H   
Sbjct: 41  SLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFA 100

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR------------------------ 120
           + +       + + L+  Y + + L DAR +FD++                         
Sbjct: 101 LVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETK 160

Query: 121 -----------ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
                      E N+VSW  MIS +++     +A+ +F  M     +P+  + ++VL + 
Sbjct: 161 ELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAV 220

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
                  +G QIH  +IK       +V S+L+DMY K     E  GVF  + E DV +C 
Sbjct: 221 GDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACN 280

Query: 230 AIISGYAQLGL---------------------------------DEEAIELFRKLQVEGM 256
           A+++G ++ GL                                 D EA+ELFR++Q+EG+
Sbjct: 281 ALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGV 340

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N VT   +L A   +AAL HGK  H   LR  I + V + ++LIDMY+KCG +  SR 
Sbjct: 341 KPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRL 400

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            FD M  R ++SWN+++ GY+ HG   E + +F LM+   + KPD V++  VLS C+ GG
Sbjct: 401 CFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ-KPDHVSFTCVLSACTQGG 459

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + G   F  +     G E  +EHY C+V +LGR+GR+ EA   IK MPFEP + + G+
Sbjct: 460 LTEEGWFYFDSMSR-NHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGA 518

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL +CRVH  VD+GE   +R+ E+EP N GNY++LSN+YAS   W +V  VR++M+ + +
Sbjct: 519 LLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGL 578

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K+PG SWIE+   +H   A D SHP   ++  K+ +L+V+ K++GYVP    VL DV+E
Sbjct: 579 KKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEE 638

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           + KE++L GHSEKLA+  GL+ T  G P++VIKNLRIC DCH   KF+S    R++ +RD
Sbjct: 639 QDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRD 698

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFH    G CSCGDYW
Sbjct: 699 TNRFHQFKGGVCSCGDYW 716



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 189/436 (43%), Gaps = 50/436 (11%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNV----VSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L +F N   CL  A K        ++    +S    I  +S+  H    + +F  ML   
Sbjct: 10  LPLFENFSHCLCSATKASLSQAHAHILKTGISLPETIQIFSKLNHFGHVIRVFSYMLTQG 69

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+     TV+ +CA     + GKQ+H   + S       V SSLL MY +   + +AR
Sbjct: 70  IVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDAR 129

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELF---RKLQVE-------GMISNY---- 260
            VF+ LP+  VV+ +A+IS +A+ G  +E  ELF   R L VE       GMIS +    
Sbjct: 130 NVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSG 189

Query: 261 ---------------------VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
                                 + +SVL A+  L     G Q+H +V++  +     + +
Sbjct: 190 SYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVS 249

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDMY KC   +    VF+ M E  V + NA++ G S++G+    +E+F   ++   + 
Sbjct: 250 ALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVF---KQFKGMD 306

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            + V++ ++++ CS  G +   L +F E+    +G +P      C   +L   G +   L
Sbjct: 307 LNVVSWTSMIASCSQNGKDMEALELFREMQ--IEGVKPNSVTIPC---LLPACGNIAALL 361

Query: 420 EFIKNMPFEPTAAILGSL-LGACRVHYNVDIGEFVGQRL-MEIEPE-NAGNYVILSNLYA 476
                  F     I   + +G+  +      G  +  RL  ++ P  N  ++  L   YA
Sbjct: 362 HGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYA 421

Query: 477 SAGRWEDVTRVRELMK 492
             G+  +   + ELM+
Sbjct: 422 MHGKTFEAINIFELMQ 437


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/551 (40%), Positives = 336/551 (60%), Gaps = 37/551 (6%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F   +  +V  WTA+I  ++ +    +ALN + +ML    EPN FTF+++L  C     
Sbjct: 84  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP---- 139

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA---- 230
            E GK +HS  +K  F+S +YV + LLD+YA+ G +  A+ +F+ +PE+ +VS TA    
Sbjct: 140 IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 199

Query: 231 ---------------------------IISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
                                      +I GY Q G+  EA+ LFR++       N VT 
Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            SVL+A   L AL  G+ VHS++    I   V +  +L+DMYSKCGSL  +R VFD + +
Sbjct: 260 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 319

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + V++WN+M+VGY+ HG  +E ++LF  M     + P ++T++ +LS C H G    G  
Sbjct: 320 KDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWD 378

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           +F+++ D + G EP+IEHYGC+V++LGRAG V +A E +KNM  EP   + G+LLGACR+
Sbjct: 379 IFNKMKD-EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 437

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H  + +GE + + L++    N+G Y++LSN+YA+ G W+ V R+R +MK+  V K+PG S
Sbjct: 438 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 497

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
            IE++  +H F A   +HP R+E+   +++++   K  GY P    VL+D+ E +KE+ L
Sbjct: 498 SIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSL 557

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ FGLI T  G  I+++KNLR+C DCH   K +SK+ GRK+ +RD+NRFHH 
Sbjct: 558 EVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHF 617

Query: 624 VEGTCSCGDYW 634
           V G+CSCGDYW
Sbjct: 618 VNGSCSCGDYW 628



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 165/338 (48%), Gaps = 40/338 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK-- 105
           +M T G+E     + ++L  C     +  G+ +H+  +K  +   +Y+RT L+  Y +  
Sbjct: 118 QMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGG 173

Query: 106 -----------------------CEC------LSDARKMFDEMRERNVVSWTAMISAYSQ 136
                                    C      L  AR +FD M ER+ V W  MI  Y+Q
Sbjct: 174 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 233

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL LF RML++  +PNE T  +VL++C      E G+ +HS I  +  + +++V
Sbjct: 234 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 293

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++L+DMY+K G + +AR VF+ + ++DVV+  ++I GYA  G  +EA++LF+ +   G+
Sbjct: 294 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 353

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
               +T+  +L+A      +  G  + + +   + I   +     ++++  + G +  + 
Sbjct: 354 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 413

Query: 316 RVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELF 349
            +  NM+ E   + W  +L     HG   +G ++VEL 
Sbjct: 414 ELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 451



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 168/389 (43%), Gaps = 79/389 (20%)

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIH+++ +   + H  +   L   YA  GR+  +  +F       V   TAII G+A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L E+A+  + ++  +G+  N  T++S+L     L  +  GK +HS  ++    S + ++ 
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEPGKALHSQAVKLGFDSDLYVRT 163

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVIS------------------------------- 328
            L+D+Y++ G +  ++++FD M E++++S                               
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN M+ GY+++GM  E + LF  M +  K KP+ VT L+VLS C   G  + G  V H  
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKA-KAKPNEVTVLSVLSACGQLGALESGRWV-HSY 281

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGR-----------------------VG--------E 417
           ++  +G +  +     +VDM  + G                        VG        E
Sbjct: 282 IE-NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQE 340

Query: 418 ALEFIKN---MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPENAGNYVIL 471
           AL+  K+   M   PT      +L AC     V  G  +  ++ +   IEP+   +Y  +
Sbjct: 341 ALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK-IEHYGCM 399

Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDP 500
            NL   AG    V +  EL+K   +  DP
Sbjct: 400 VNLLGRAGH---VEQAYELVKNMNIEPDP 425



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++     +  V++ T L+  Y+KC  L DAR +FD++ ++
Sbjct: 261 SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 320

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           +VV+W +MI  Y+    S EAL LF  M R    P   TF  +L++C  +     G  I 
Sbjct: 321 DVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF 380

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQ 237
           + +  +   E  I     ++++  +AG + +A  + + +  E D V    ++     + +
Sbjct: 381 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTY 263
           + L E+ +EL     V+  ++N  TY
Sbjct: 441 IALGEKIVELL----VDQNLANSGTY 462


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 345/570 (60%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C  +++L  G+  H   I             LI  Y KC     AR +FD M  R++
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW  MI+ Y+      +AL LF RM R  T  +EFT ++ + +CA  +     KQ+H++
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            +K   +S+ +VG+++LD+YAK   I +A  VFE +PER +V+ +++ +GY Q GL EEA
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR  Q EG+     T +++L+A + LA    G Q+H+ +L+        +  SL+D+
Sbjct: 244 LHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDV 303

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y++CG +  +  +F  M  + V+ WNAM+  +S+H    E + LF  M++   + P+ VT
Sbjct: 304 YARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLG-IFPNEVT 362

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           YL+VLS CSH G+ ++G   F  ++  +   EP + HY C+VD+LGR+G+  EA E +  
Sbjct: 363 YLSVLSVCSHAGLVEKGRHYFSLLMSDRT-VEPNVLHYSCMVDVLGRSGKTDEAWELLNK 421

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MPFEPTA++ GSLLG+CR + N+ +     ++L ++EP+N GN+V+LSN+YA++G WE+V
Sbjct: 422 MPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENV 481

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
              R+ +K+    K+ GRSWIE    +H F   +R HP   ++  K++++  + ++    
Sbjct: 482 LMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARR 541

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
             + C L+DV  EQKE++L  HSEKLAL+FGLI  P   PI + KNLRIC DCH+F K  
Sbjct: 542 TSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIA 601

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + +  R V +RD NRFHH  +G+CSCGD+W
Sbjct: 602 AHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 4/296 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q  K    M   G  M      + + AC  +  +   +++H   +K       ++ T ++
Sbjct: 141 QALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAIL 200

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  + DA  +F++M ER +V+W+++ + Y Q     EAL+LF    R   E  EF
Sbjct: 201 DVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEF 260

Query: 161 TFATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           T + +L++CA  A   E G Q+H++I+K  F  + +V +SL+D+YA+ G+I +A  +F  
Sbjct: 261 TLSAILSACASLALKIE-GIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAY 319

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +  ++VV   A+I+ +++     EA+ LF K+Q  G+  N VTY SVL+  S    +  G
Sbjct: 320 MEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKG 379

Query: 280 KQVHSHVLRFEIPSYVVLQNS-LIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           +   S ++        VL  S ++D+  + G    +  + + M  E T   W ++L
Sbjct: 380 RHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLL 435


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/633 (36%), Positives = 369/633 (58%), Gaps = 33/633 (5%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP- 91
           + TLCS G L +A  +   L +      +   + +C  +++L  G+++H  ++ + +   
Sbjct: 20  IATLCSKGNLREAF-QRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSD 78

Query: 92  ---------------------PVYLRTR---------LIVFYNKCECLSDARKMFDEMRE 121
                                 VY R R         LI  Y +   L +ARK+FDEM +
Sbjct: 79  KFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPD 138

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R + +W AMI+   Q   + E L+LF  M      P+E+T  +V +  AG     +G+QI
Sbjct: 139 RKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQI 198

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H   IK   E  + V SSL  MY + G++ +   V   +P R++V+   +I G AQ G  
Sbjct: 199 HGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCP 258

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E  + L++ +++ G   N +T+ +VL++ S LA  G G+Q+H+  ++    S V + +SL
Sbjct: 259 ETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSL 318

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MYSKCG L  + + F    +   + W++M+  Y  HG G E +ELFN M E+  ++ +
Sbjct: 319 ISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEIN 378

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            V +L +L  CSH G++D+GL +F  +V+ K GF+P ++HY CVVD+LGRAG + +A   
Sbjct: 379 EVAFLNLLYACSHSGLKDKGLELFDMMVE-KYGFKPGLKHYTCVVDLLGRAGCLDQAEAI 437

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I++MP +    I  +LL AC +H N ++ + V + +++I+P ++  YV+L+N++ASA RW
Sbjct: 438 IRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRW 497

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            DV+ VR+ M++K V K+ G SW E    +H F   DRS    +E+ + +K+L+++ K  
Sbjct: 498 RDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLK 557

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY PD + VL+D+DEE+KE  L+ HSEKLA+ F L+  PEGAPIR+IKNLR+C DCH   
Sbjct: 558 GYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAF 617

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++S +  R+++LRD +RFHH + G CSCGDYW
Sbjct: 618 KYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/590 (37%), Positives = 357/590 (60%), Gaps = 37/590 (6%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVF----YNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           +HA+MI+T     V+  +RLI F     +    +  A ++F +++  N+  + AMI  +S
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
              +  +A + +++  R    P+  TF  ++ SC       +G Q H  IIK  FE  +Y
Sbjct: 96  GSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVY 155

Query: 196 VGSSLLDMYA-------------------------------KAGRIHEARGVFECLPERD 224
           V +SL+ MYA                               K G +  AR +F+ +PE++
Sbjct: 156 VQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKN 215

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +V+ + +ISGYAQ    ++A+ELF+ LQ +G+ +N     SV+++ + L AL  G++ H 
Sbjct: 216 LVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHD 275

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           +V++  +   ++L  +L+DMY++CGS+  +  VF+++ ER  +SW A++ G + HG    
Sbjct: 276 YVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSER 335

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            ++ F  M E   + P  +T+ AVLS CSHGG+ +RG  +F E +      EP +EHYGC
Sbjct: 336 SLKYFATMVEAG-LTPRDITFTAVLSACSHGGLVERGFQIF-ESMKRDHRVEPRLEHYGC 393

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VD+LGRAG++ EA  F+  MP +P A + G+LLGACR+H N +IGE VG+ L+++ P++
Sbjct: 394 MVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQH 453

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           +G YV+LSN+YA+A  WE VT +R++MK K + K PG S IELD  +H F   D SHP  
Sbjct: 454 SGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEM 513

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           +++    +++ ++ + AGY  + +  L+D+DEE+KE  L  HSEKLA+ FG++ +  G P
Sbjct: 514 DKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTP 573

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IR++KNLR+C DCH   K +SKV+GR++ +RD+NRFHH  +G CSC DYW
Sbjct: 574 IRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 33/303 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY-------------------- 103
           L+ +C     +  G + H H+IK  +   VY++  L+  Y                    
Sbjct: 125 LVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVD 184

Query: 104 -----------NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                      NKC  +  ARK+FD+M E+N+V+W+ MIS Y+Q  H  +A+ LF  +  
Sbjct: 185 VVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQS 244

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
                NE    +V++SCA     ELG++ H  ++K+    ++ +G++L+DMYA+ G I +
Sbjct: 245 QGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDK 304

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VFE LPERD +S TA+I+G A  G  E +++ F  +   G+    +T+ +VL+A S 
Sbjct: 305 AVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSH 364

Query: 273 LAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWN 330
              +  G Q+   + R   +   +     ++D+  + G L  + R    M  +     W 
Sbjct: 365 GGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWG 424

Query: 331 AML 333
           A+L
Sbjct: 425 ALL 427


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 332/575 (57%), Gaps = 34/575 (5%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V     LI  Y +   +++A+++FD+M  RN +SW  MI+ Y+Q   S EAL L   +
Sbjct: 351 PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR- 209
            RS   P+  +  ++  +C+     E G Q+HSL +K   + + +  ++L+ MY K    
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNM 470

Query: 210 ------------------------------IHEARGVFECLPERDVVSCTAIISGYAQLG 239
                                         + EAR  F+ +  RD VS T IIS YA   
Sbjct: 471 EYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAE 530

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+  F+ +  E  + N      +L     L A   G+Q+H+  ++  + S +++ N
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVAN 590

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MY KCG    SRR+FD M ER + +WN ++ GY++HG+GRE ++++  M E   V 
Sbjct: 591 ALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHM-ESAGVL 648

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT++ +L+ CSH G+ D G   F  +     G  P  EHY C+VD+LGR G V  A 
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQ-DYGLTPLPEHYACMVDLLGRTGDVQGAE 707

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +FI +MP EP   I  +LLGAC++H N +IG+   ++L  IEP NAGNYV+LSN+Y+S G
Sbjct: 708 QFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W +V  VR++MK++ V K+PG SW ++   +H+F   D+ H   EE+ A +++L    K
Sbjct: 768 MWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLK 827

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD   VL+D+DEEQKE  LL HSEKLA+ + L+ TP+G PI+++KNLRIC DCH 
Sbjct: 828 ATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHT 887

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F KFVS V  R++ +RD NRFHH   G+CSC D+W
Sbjct: 888 FIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 172/404 (42%), Gaps = 104/404 (25%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DAR +F++M ERN+VSWT MIS Y +  +  +A ++F +M R    P++  FA+ L++
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK---------------------- 206
             G    ++ + +  L +K+ FE  + +G+++L++Y++                      
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 207 ----------AGRIHEARGVFE--------C-----------------------LPERDV 225
                      GRI  A  V+E        C                       +PE  V
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIV 353

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------ 261
           VS  A+I+GY Q G+  EA ELF K+         GMI+ Y                   
Sbjct: 354 VSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 262 -------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
                  +  S+  A S + AL  G QVHS  ++          N+LI MY KC ++ Y+
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R+VF  M  + ++SWN+ L    ++ +  E    F     +N +  D V++  ++S  +H
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF-----DNMLSRDDVSWTTIISAYAH 528

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
               +  +  F  +  C    E E+ +   +  +LG  G +G +
Sbjct: 529 AEQSNEAMGAFKTMF-C----EHELPNSPILTILLGVCGSLGAS 567



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 175/415 (42%), Gaps = 86/415 (20%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    E+   G+        ++  AC N   L  G +VH+  +K   +   + 
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA-------------------------- 129
              LI  Y KC  +  AR++F  M  +++VSW +                          
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 130 -----MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
                +ISAY+    S EA+  F  M      PN      +L  C      ++G+QIH++
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTV 576

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            IK   +S + V ++L+ MY K G   ++R +F+ + ERD+ +   II+GYAQ GL  EA
Sbjct: 577 AIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREA 635

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHG----KQVHSHVLRFEIPSYVVLQNS 300
           I++++ ++  G++ N VT+  +L A S    +  G    K +        +P +      
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYA---C 692

Query: 301 LIDMYSKCGSLTYSRR-VFDNMSERTVISWNAML----------VG-------------- 335
           ++D+  + G +  + + ++D   E   + W+A+L          +G              
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSN 752

Query: 336 ----------YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
                     YS  GM  EV E+  +M+++  +K           GCS   ++D+
Sbjct: 753 AGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE---------PGCSWTQIKDK 798



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 53/348 (15%)

Query: 95  LRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +RT  I+   Y +   + +AR++FD M ERN V+W AMIS Y Q      A  LF  M  
Sbjct: 96  MRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS 155

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
            D                                           +S+L  Y  + ++ +
Sbjct: 156 RDVSS---------------------------------------WNSMLTGYCHSLQMVD 176

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +FE +PER++VS T +ISGY ++    +A ++F K+  EG++ +   +AS L+A+ G
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-LTYSRRVFDNMSERTVISWNA 331
           L  L   + +    L+      VV+  +++++YS+  S L  + + F++M ER   +W+ 
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+   S  G     + ++    E + VK  +    A+++G +  G  D    +F +I   
Sbjct: 297 MIAALSHGGRIDAAIAVY----ERDPVKSIACR-TALITGLAQCGRIDDARILFEQIP-- 349

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
               EP +  +  ++    + G V EA E    MPF  T +  G + G
Sbjct: 350 ----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            + GR+ EAR VF+ +P RD+++  ++IS Y   G+ + A +L+  +       N  T A
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG----GNMRTGA 100

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            +L+    L  +   ++V   +L     ++    N++I  Y + G +T +RR+FD M  R
Sbjct: 101 ILLSGYGRLGRVLEARRVFDGMLERNTVAW----NAMISCYVQNGDITMARRLFDAMPSR 156

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
            V SWN+ML GY       +   LF  M E N      V++  ++SG  +G +E+ G A
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL-----VSWTVMISG--YGRIENHGKA 208


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/580 (40%), Positives = 350/580 (60%), Gaps = 16/580 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHM--------IKTCYRPPVYLRTRLIVFYNKCECLSDARKM 115
           L+  CV   T   G+ +H H+                +++   L+  Y K   L DA ++
Sbjct: 78  LVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRL 137

Query: 116 FDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           FD M ERNVV+WT +++A +       EAL   + M R    PN +TF++VL +C G  G
Sbjct: 138 FDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGAC-GTPG 196

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             +   +H+  +K   +S ++V SSL+D Y K G +   R VF+ +  RD+V   +II+G
Sbjct: 197 --VLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAG 254

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           +AQ G    AIELF +++  G  +N  T  SVL A +G+  L  G+QVH+HVL++E    
Sbjct: 255 FAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE--RD 312

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           ++L N+L+DMY KCGSL  +  +F  M +R VISW+ M+ G +++G   E + +F+LM+ 
Sbjct: 313 LILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKS 372

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  V P+ +T + VL  CSH G+ + G   F  +     G +PE EH+ C+VD+LGRAG+
Sbjct: 373 EG-VAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLF-GIQPEREHHNCMVDLLGRAGK 430

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA+EFI++M  EP A I  +LLGACR+H + ++  +  + ++++EP++ G  V+LSN 
Sbjct: 431 LDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNT 490

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA   +W D  +  + M+++ + K+PGRSWIEL++ +H F A D SHP  + +  ++ +L
Sbjct: 491 YADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRL 550

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
             +    GYVP    VL D+  EQKE +L  HSEK+A+ FG +    G PIR++KNLRIC
Sbjct: 551 IGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRIC 610

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH FAK VSK  GR + +RD  RFHH  +G CSCGDYW
Sbjct: 611 GDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/610 (39%), Positives = 357/610 (58%), Gaps = 39/610 (6%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKM 115
           RF+E +   +     +++    ++HA +++   Y  P+ L  +L   Y     L  +  +
Sbjct: 43  RFQEVERFASLIDKSKSVAHLLQIHASLLRRGLYHNPI-LNFKLQRSYAALGRLDCSVFV 101

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           F+   E NV S++A+I ++ Q      A   + +ML    EPN FTF++VL SC+     
Sbjct: 102 FNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----L 157

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYA------------------------------ 205
           E GK +H   IK    S +YV + L+D+YA                              
Sbjct: 158 ESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCY 217

Query: 206 -KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G + +AR +FE + ERDVV    +I GYAQ G+  E+++LFR++ V   I N VT  
Sbjct: 218 SKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVL 277

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           +VL+A   L AL  G+ +HS++    I   V +  +LIDMYSKCGSL  +R VFD + ++
Sbjct: 278 AVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDK 337

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V++WN+M+VGY+ HG  +  ++LF  M E    KP  +T++ +LS C HGG+ + G + 
Sbjct: 338 DVVAWNSMIVGYAMHGFSQHALQLFEEMTETGH-KPTDITFIGILSACGHGGLVEEGRSF 396

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F  + D K G EP+IEHYGC+V++LGRAG + EA   +KNM       + G+LLG CR+H
Sbjct: 397 FRLMRD-KYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            N+ +GE + + L++ +  N+G YV+LSN+YA+ G WE V ++R LMKE  + K+ G S 
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           IE+D  +H F A +R HP  +E+   + +++   K  GY P    VL+D+ EEQKE+ L 
Sbjct: 516 IEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLE 575

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLA+ FGLI T  G  ++++KNLR+C DCH   K +S++ GRK+ +RD+NRFHH  
Sbjct: 576 VHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFE 635

Query: 625 EGTCSCGDYW 634
           +G CSCGDYW
Sbjct: 636 DGLCSCGDYW 645


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 347/571 (60%), Gaps = 2/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC        G ++H+ ++K       +++  LI  Y KC  + +A K+FD++ ++N
Sbjct: 114 VLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKN 173

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             SWTA IS Y       EA+++F R+L     P+ F+   VL++C        G+ I  
Sbjct: 174 FASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDE 233

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I ++    +++V ++L+D Y K G +  AR VF+ + E+++VS +++I GYA  GL +E
Sbjct: 234 YITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKE 293

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A++LF K+  EG+  +      VL + + L AL  G    + +   E     VL  +LID
Sbjct: 294 ALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALID 353

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  +  VF  M ++  + WNA + G +  G  ++ + LF  M E++ +KPD  
Sbjct: 354 MYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQM-EKSGIKPDRN 412

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ +L  C+H G+ + G   F+ + +C     PEIEHYGC+VD+LGRAG + EA + IK
Sbjct: 413 TFVGLLCACTHAGLVEEGRRYFNSM-ECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIK 471

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +MP E  A + G+LLG CR+H +  + E V ++L+ +EP ++GNYV+LSN+YA++ +WE+
Sbjct: 472 SMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEE 531

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
             ++R +M E+ V K PG SWIE+D ++H F   D SHP+ E++ AK+ +L+   K AGY
Sbjct: 532 AAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGY 591

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VP    VL+D++EE+KE  +  HSEKLA+ FGLI T     I V+KNLR+C DCH   K 
Sbjct: 592 VPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKH 651

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +S++ GR++ +RD NRFH   +G CSC DYW
Sbjct: 652 ISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 182/348 (52%), Gaps = 3/348 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           + +HA +++       YL  +++ F       + + ++ D+ +E N+  +  MI      
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               E++ ++  M +    P+ FTF  VL +CA     ELG ++HSL++K+  E+  +V 
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
            SL+++Y K G I  A  VF+ +P+++  S TA ISGY  +G   EAI++FR+L   G+ 
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  +   VL+A      L  G+ +  ++    +   V +  +L+D Y KCG++  +R V
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M E+ ++SW++M+ GY+ +G+ +E ++LF  M  E  +KPD    + VL  C+  G 
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG-LKPDCYAMVGVLCSCARLGA 325

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            + G      +++  +  +  +     ++DM  + GR+  A E  + M
Sbjct: 326 LELGDWA-SNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWEVFRGM 371



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
           + G + L H K +H+ +LR  +     L N ++      G+  YS R+ D   E  +  +
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLF 76

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N M+ G   +   +E +E+++ MR+E  + PDS T+  VL  C+   + D  L V    +
Sbjct: 77  NTMIRGLVLNDCFQESIEIYHSMRKEG-LSPDSFTFPFVLKACAR--VLDSELGVKMHSL 133

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP----TAAILGSL-LGACR 442
             K G E +      ++++  + G +  A +   ++P +     TA I G + +G CR
Sbjct: 134 VVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCR 191


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/570 (39%), Positives = 352/570 (61%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L +C    TL  G+ + A+ +K       ++ + LI  Y  C  ++ A+ +FD + E  V
Sbjct: 126 LKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGV 185

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V W A+I+AY +  +  E + +F  ML      +E T  +V+T+C      +LGK +   
Sbjct: 186 VMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEY 245

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           + +     +  + ++L+DMYAK G + +AR +F+ +  RDVV+ +A+ISGY Q     EA
Sbjct: 246 VDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREA 305

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF ++Q+  +  N VT  SVL+A + L AL  GK VHS++ R  +   ++L  +L+D 
Sbjct: 306 LALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDF 365

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +   F++M  +   +W A++ G + +G GRE +ELF+ MR+ + ++P  VT
Sbjct: 366 YAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKAS-IEPTDVT 424

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ VL  CSH  + + G   F  +     G +P  EHYGCVVD+LGRAG + EA +FI+ 
Sbjct: 425 FIGVLMACSHSCLVEEGRRHFDSMTQ-DYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRT 483

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP EP A I  +LL +C VH NV+IGE   ++++ + P ++G+Y++LSN+YAS G+W++ 
Sbjct: 484 MPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNA 543

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
             +R+ MK++ + K PG S IELD ++  F A D  HP  +E+  KV+++  + K AGY+
Sbjct: 544 AMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYI 603

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P+ + V  +VDE +KE  +  HSEKLA+ FGL+    GA IR+ KNLR+C DCH+  K +
Sbjct: 604 PNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLI 663

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKVY R++ +RD+NRFHH  +GTCSC DYW
Sbjct: 664 SKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++ +      + L T L+ FY KC C+ DA + F+ M  +
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           N  +WTA+I   +      EAL LF  M ++  EP + TF  VL +C+ +   E G++  
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYA---Q 237
            S+      +        ++D+  +AG I EA      +P E + V   A++S  A    
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 238 LGLDEEAIE 246
           + + EEA++
Sbjct: 506 VEIGEEALK 514


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 358/600 (59%), Gaps = 6/600 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEE---YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG    +L  ++ +G++        +DT L A +        + VH  ++KTCY     +
Sbjct: 225 NGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV 284

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +   +SDA K+F+EM + +VV W+ MI+ + Q     +A+++FIRM     
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFV 344

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PNEFT +++L  CA      LG+Q+H L++K  F+  +YV ++L+D+YAK  ++  A  
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVK 404

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  L  ++VVS   +I GY  LG   +A+ +FR+     +    VT++S L A + LA+
Sbjct: 405 LFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLAS 464

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G QVH   ++      V + NSLIDMY+KCG +  ++ VF+ M    V SWNA++ G
Sbjct: 465 MELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISG 524

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           YS HG+GR+ + +F++M+  +  KP+ +T+L VLSGCS+ G+ D+G   F  ++ C  G 
Sbjct: 525 YSTHGLGRQALRIFDIMKGSD-CKPNGLTFLGVLSGCSNAGLIDQGQDCFESMI-CDHGI 582

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           EP +EHY C+V + GR+G++ +A+  I+ +P+EP+  I  ++L A    YN +      +
Sbjct: 583 EPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAE 642

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
            +++I P++   YV+LSN+YA A +W +V  +R+ MKEK V K+PG SWIE    +H F 
Sbjct: 643 EILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFS 702

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
                HP  + ++  ++ L++K   AGYVPD + VL D+D+E+K+K L  HSE+LAL +G
Sbjct: 703 VGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYG 762

Query: 576 LIGTPEGAP-IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+  P     I ++KNLRIC DCH+  K +S +  R + +RD NRFHH   G CSC D+W
Sbjct: 763 LVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 17/353 (4%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +H+ ++K  Y    ++   LI  Y+ C  +  AR +F+ +  +++V W  ++S Y +   
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             ++L L  RM      PN +TF T L +  G   F   K +H  I+K+ +E    VG  
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LL +Y + G + +A  VF  +P+ DVV  + +I+ + Q G   +A+++F +++   ++ N
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPN 347

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             T +S+L   +     G G+Q+H  V++      V + N+LID+Y+KC  +  + ++F 
Sbjct: 348 EFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFA 407

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE--ENKVKPDSVTYLAVLSGCS---- 373
            +S + V+SWN ++VGY   G G + + +F   RE   N+V    VT+ + L  C+    
Sbjct: 408 ELSSKNVVSWNTVIVGYENLGEGGKALNMF---REALRNQVSVTEVTFSSALGACASLAS 464

Query: 374 -HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
              G++  GLA+       K      +     ++DM  + G +  A      M
Sbjct: 465 MELGVQVHGLAI-------KTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEM 510



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 187/367 (50%), Gaps = 11/367 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T+L  C+ +      + +H  ++K      ++    L+  Y K     DA  +FDEM 
Sbjct: 52  YGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMP 111

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN VS+  +   Y+ +    + + L+ R+ R   E N   F + L         E+   
Sbjct: 112 ERNNVSYVTLTQGYACQ----DPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWW 167

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I+K  ++S+ +VG++L++ Y+  G +  AR VFE +  +D+V    I+S Y + G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQ 298
            E++++L  ++ ++G + N  T+ + L A  GL A    K VH  +L+  +E+   V + 
Sbjct: 228 FEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGV- 286

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
             L+ +Y++ G ++ + +VF+ M +  V+ W+ M+  + ++G   + V++F  MR E  V
Sbjct: 287 -GLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMR-EGFV 344

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+  T  ++L+GC+ G     G  +   +V  K GF+ ++     ++D+  +  ++  A
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVV--KVGFDLDVYVSNALIDVYAKCEKMDTA 402

Query: 419 LEFIKNM 425
           ++    +
Sbjct: 403 VKLFAEL 409


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 332/575 (57%), Gaps = 34/575 (5%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V     LI  Y +   +++A+++FD+M  RN +SW  MI+ Y+Q   S EAL L   +
Sbjct: 351 PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR- 209
            RS   P+  +  ++  +C+     E G Q+HSL +K   + + +  ++L+ MY K    
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNM 470

Query: 210 ------------------------------IHEARGVFECLPERDVVSCTAIISGYAQLG 239
                                         + EAR  F+ +  RD VS T IIS YA   
Sbjct: 471 EYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAE 530

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+  F+ +  E  + N      +L     L A   G+Q+H+  ++  + S +++ N
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVAN 590

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MY KCG    SRR+FD M ER + +WN ++ GY++HG+GRE ++++  M E   V 
Sbjct: 591 ALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHM-ESAGVL 648

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT++ +L+ CSH G+ D G   F  +     G  P  EHY C+VD+LGR G V  A 
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQ-DYGLTPLPEHYACMVDLLGRTGDVQGAE 707

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +FI +MP EP   I  +LLGAC++H N +IG+   ++L  IEP NAGNYV+LSN+Y+S G
Sbjct: 708 QFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W +V  VR++MK++ V K+PG SW ++   +H+F   D+ H   EE+ A +++L    K
Sbjct: 768 MWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLK 827

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GYVPD   VL+D+DEEQKE  LL HSEKLA+ + L+ TP+G PI+++KNLRIC DCH 
Sbjct: 828 ATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHT 887

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F KFVS V  R++ +RD NRFHH   G+CSC D+W
Sbjct: 888 FIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 172/404 (42%), Gaps = 104/404 (25%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DAR +F++M ERN+VSWT MIS Y +  +  +A ++F +M R    P++  FA+ L++
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK---------------------- 206
             G    ++ + +  L +K+ FE  + +G+++L++Y++                      
Sbjct: 234 VKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYT 293

Query: 207 ----------AGRIHEARGVFE--------C-----------------------LPERDV 225
                      GRI  A  V+E        C                       +PE  V
Sbjct: 294 WSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIV 353

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV------------------ 261
           VS  A+I+GY Q G+  EA ELF K+         GMI+ Y                   
Sbjct: 354 VSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 262 -------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
                  +  S+  A S + AL  G QVHS  ++          N+LI MY KC ++ Y+
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R+VF  M  + ++SWN+ L    ++ +  E    F     +N +  D V++  ++S  +H
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF-----DNMLSRDDVSWTTIISAYAH 528

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
               +  +  F  +  C    E E+ +   +  +LG  G +G +
Sbjct: 529 AEQSNEAMGAFKTMF-C----EHELPNSPILTILLGVCGSLGAS 567



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 175/415 (42%), Gaps = 86/415 (20%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    E+   G+        ++  AC N   L  G +VH+  +K   +   + 
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA-------------------------- 129
              LI  Y KC  +  AR++F  M  +++VSW +                          
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516

Query: 130 -----MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
                +ISAY+    S EA+  F  M      PN      +L  C      ++G+QIH++
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTV 576

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            IK   +S + V ++L+ MY K G   ++R +F+ + ERD+ +   II+GYAQ GL  EA
Sbjct: 577 AIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREA 635

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHG----KQVHSHVLRFEIPSYVVLQNS 300
           I++++ ++  G++ N VT+  +L A S    +  G    K +        +P +      
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYA---C 692

Query: 301 LIDMYSKCGSLTYSRR-VFDNMSERTVISWNAML----------VG-------------- 335
           ++D+  + G +  + + ++D   E   + W+A+L          +G              
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSN 752

Query: 336 ----------YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
                     YS  GM  EV E+  +M+++  +K           GCS   ++D+
Sbjct: 753 AGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE---------PGCSWTQIKDK 798



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 53/348 (15%)

Query: 95  LRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +RT  I+   Y +   + +AR++FD M ERN V+W AMIS Y Q      A  LF  M  
Sbjct: 96  MRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS 155

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
            D                                           +S+L  Y  + ++ +
Sbjct: 156 RDVSS---------------------------------------WNSMLTGYCHSLQMVD 176

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +FE +PER++VS T +ISGY ++    +A ++F K+  EG++ +   +AS L+A+ G
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-LTYSRRVFDNMSERTVISWNA 331
           L  L   + +    L+      VV+  +++++YS+  S L  + + F++M ER   +W+ 
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+   S  G     + ++    E + VK  +    A+++G +  G  D    +F +I   
Sbjct: 297 MIAALSHGGRIDAAIAVY----ERDPVKSIACR-TALITGLAQCGRIDDARILFEQIP-- 349

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
               EP +  +  ++    + G V EA E    MPF  T +  G + G
Sbjct: 350 ----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            + GR+ EAR VF+ +P RD+++  ++IS Y   G+ + A +L+  +       N  T A
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG----GNMRTGA 100

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            +L+    L  +   ++V   +L     ++    N++I  Y + G +T +RR+FD M  R
Sbjct: 101 ILLSGYGRLGRVLEARRVFDGMLERNTVAW----NAMISCYVQNGDITMARRLFDAMPSR 156

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
            V SWN+ML GY       +   LF  M E N      V++  ++SG  +G +E+ G A
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL-----VSWTVMISG--YGRIENHGKA 208


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/537 (41%), Positives = 334/537 (62%), Gaps = 44/537 (8%)

Query: 102 FYNKCEC---LSDARKMFDEMRERNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEP 157
            Y KC     + D+RK+F++M E NV+SWTA+I+AY Q      EA+ LF +M+ +    
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV-- 58

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
                     +C                          VG+SL+ MYA++GR+ +AR  F
Sbjct: 59  ----------NC--------------------------VGNSLISMYARSGRMEDARKAF 82

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + L E+++VS  AI+ GYA+    EEA  LF ++   G+  +  T+AS+L+  + + A+G
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+Q+H  +L+    S   + N+LI MYS+CG++  + +VF+ M +R VISW +M+ G++
Sbjct: 143 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 202

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           KHG     +E+F+ M E    KP+ +TY+AVLS CSH GM   G   F+ +   + G  P
Sbjct: 203 KHGFATRALEMFHKMLETG-TKPNEITYVAVLSACSHVGMISEGQKHFNSMYK-EHGIVP 260

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            +EHY C+VD+LGR+G + EA+EFI +MP    A +  +LLGACRVH N ++G    + +
Sbjct: 261 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 320

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           +E EP++   Y++LSNL+ASAG+W+DV ++R+ MKE+ + K+ G SWIE++  +H FH  
Sbjct: 321 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 380

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           + SHP   ++  ++ QL+ K KE GY+PD   VL+D++EEQKE+ L  HSEK+A+ FGLI
Sbjct: 381 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 440

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T +  PIR+ KNLR+C DCH   K++S   GR++ +RD NRFHHI  G CSC DYW
Sbjct: 441 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 5/256 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y +   + DARK FD + E+N+VS+ A++  Y++   S EA  LF  +  +    +
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            FTFA++L+  A       G+QIH  ++K  ++S+  + ++L+ MY++ G I  A  VF 
Sbjct: 125 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 184

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + +R+V+S T++I+G+A+ G    A+E+F K+   G   N +TY +VL+A S +  +  
Sbjct: 185 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 244

Query: 279 G-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGY 336
           G K  +S      I   +     ++D+  + G L  +    ++M      + W  +L   
Sbjct: 245 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304

Query: 337 SKHG---MGREVVELF 349
             HG   +GR   E+ 
Sbjct: 305 RVHGNTELGRHAAEMI 320



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E+A  G+ +    + +LL+   +   +  G+++H  ++K  Y+    +   LI  Y++C 
Sbjct: 115 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 174

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F+EM +RNV+SWT+MI+ +++   +  AL +F +ML + T+PNE T+  VL+
Sbjct: 175 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 234

Query: 168 SCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+       G K  +S+  +      +   + ++D+  ++G + EA      +P
Sbjct: 235 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 289


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/515 (44%), Positives = 325/515 (63%), Gaps = 10/515 (1%)

Query: 127 WTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           +  +I A++Q  HS   AL  +  M R    PN+FTF  VL +CAG    ELG  +H+ +
Sbjct: 194 FNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASM 253

Query: 186 IKSNFESHIYVGSSLLDMY------AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +K  FE   +V ++L+ MY        +G +  A+ VF+  P +D V+ +A+I GYA+ G
Sbjct: 254 VKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARAG 312

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
               A+ LFR++QV G+  + +T  SVL+A + L AL  GK + S++ R  I   V L N
Sbjct: 313 NSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCN 372

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDM++KCG +  + +VF  M  RT++SW +M+VG + HG G E V +F+ M E+  V 
Sbjct: 373 ALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQG-VD 431

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD V ++ VLS CSH G+ D+G   F+ + +      P+IEHYGC+VDML RAGRV EAL
Sbjct: 432 PDDVAFIGVLSACSHSGLVDKGHYYFNTMENMF-SIVPKIEHYGCMVDMLSRAGRVNEAL 490

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EF++ MP EP   I  S++ AC     + +GE V + L+  EP +  NYV+LSN+YA   
Sbjct: 491 EFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLL 550

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWE  T+VRE+M  K + K PG + IE++  ++ F A D+SH   +E+   V+++  + K
Sbjct: 551 RWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIK 610

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGYVP  S VL D+DEE KE  L  HSEKLA+ F L+ TP G PIR++KNLR+C DCH+
Sbjct: 611 RAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHS 670

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+SKVY R++ +RD+NRFHH   G CSCGD+W
Sbjct: 671 ATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD-------ARKMF 116
           +L AC     L  G  VHA M+K  +    ++R  L+  Y  C C  D       A+K+F
Sbjct: 233 VLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMY--CCCCQDGSSGPVSAKKVF 290

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           DE   ++ V+W+AMI  Y++  +S  A+ LF  M  +   P+E T  +VL++CA     E
Sbjct: 291 DESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALE 350

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LGK + S I + N    + + ++L+DM+AK G +  A  VF  +  R +VS T++I G A
Sbjct: 351 LGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLA 410

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPSY 294
             G   EA+ +F ++  +G+  + V +  VL+A   SGL   GH    ++    F I   
Sbjct: 411 MHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGH-YYFNTMENMFSIVPK 469

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELFN 350
           +     ++DM S+ G +  +      M  E   + W +++      G   +G  V +   
Sbjct: 470 IEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAK--E 527

Query: 351 LMREE 355
           L+R E
Sbjct: 528 LIRRE 532



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 68/318 (21%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC +   L  G+ + +++ +      V L   LI  + KC  +  A K+F EM+ R
Sbjct: 338 SVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR 397

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-------GAFGF 175
            +VSWT+MI   +      EA+ +F  M+    +P++  F  VL++C+       G + F
Sbjct: 398 TIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYF 457

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
              + + S++ K      I     ++DM ++AGR++                        
Sbjct: 458 NTMENMFSIVPK------IEHYGCMVDMLSRAGRVN------------------------ 487

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS-- 293
                  EA+E  R + VE    N V + S++TA      L  G+ V   ++R E PS  
Sbjct: 488 -------EALEFVRAMPVE---PNQVIWRSIVTACHARGELKLGESVAKELIRRE-PSHE 536

Query: 294 --YVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--------TVISWN----AMLVGYSKH 339
             YV+L N    +Y+K        +V + M  +        T+I  N      + G   H
Sbjct: 537 SNYVLLSN----IYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSH 592

Query: 340 GMGREVVELFNLMREENK 357
              +E+ E+   M  E K
Sbjct: 593 DQYKEIYEMVEEMGREIK 610


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/612 (40%), Positives = 356/612 (58%), Gaps = 51/612 (8%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTA 129
           +T++  +++HA MIKT           L+ F   +    L  ARK+F  M   N  S+  
Sbjct: 22  KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81

Query: 130 MISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           +I A S+     +AL +FI M+     EPN FTF +V  +C  A     G+Q+H L +K 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 189 NFESHIYVGSS----------------------------------------------LLD 202
             +S  +V S+                                              ++D
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 201

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
            Y + G +  AR +F+ +P+R VVS   +I+GYAQ G  +EA+E+FR++Q+  +  NYVT
Sbjct: 202 GYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVT 261

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SVL A+S L AL  GK VH + +R  I    VL ++LIDMY+KCGS+  + +VF+ + 
Sbjct: 262 LVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLP 321

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R V++W+ ++ G + HG  ++ ++ F  M E   V P  VTY+ +LS CSH G+ + G 
Sbjct: 322 KRNVVTWSTIIAGLAMHGRAKDTLDHFEDM-ERAGVMPSDVTYIGLLSACSHAGLVNEGR 380

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
             F  +V    G EP IEHYGC+VD+LGRAG + E+ E I NMP +P   I  +LLGAC+
Sbjct: 381 WFFDHMVRVS-GLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACK 439

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H NV++G+ V + LME+ P ++G+YV LSN+YAS G WE V +VR +MKE  V KDPG 
Sbjct: 440 MHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGC 499

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           SWIELD ++H F   D SHP  +++ + ++++S      GY P+ + VL ++DEE KE  
Sbjct: 500 SWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESS 559

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           L  HSEK+A+ FGLI T    P+R+ KNLRIC DCH+  K +SK+Y RK+ +RD+ RFHH
Sbjct: 560 LNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHH 619

Query: 623 IVEGTCSCGDYW 634
            V G+CSC DYW
Sbjct: 620 FVNGSCSCMDYW 631



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 168/360 (46%), Gaps = 58/360 (16%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD--------- 111
           + ++  AC     LR G++VH   +K       ++ + ++  Y  C  + D         
Sbjct: 115 FPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRV 174

Query: 112 -------------------------------------ARKMFDEMRERNVVSWTAMISAY 134
                                                AR +FDEM +R+VVSW  MI+ Y
Sbjct: 175 FVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGY 234

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +Q  H  EA+ +F  M  ++  PN  T  +VL + +     ELGK +H   +++N     
Sbjct: 235 AQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDD 294

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
            +GS+L+DMYAK G I +A  VFE LP+R+VV+ + II+G A  G  ++ ++ F  ++  
Sbjct: 295 VLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERA 354

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTY 313
           G++ + VTY  +L+A S    +  G+    H++R   +   +     ++D+  + G L  
Sbjct: 355 GVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEE 414

Query: 314 SRRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVELFNLMREENKVKP-DSVTYLAV 368
           S  +  NM  +   + W A+L     HG   MG+ V E  +LM    ++ P DS +Y+A+
Sbjct: 415 SEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAE--HLM----ELAPHDSGSYVAL 468


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 359/594 (60%), Gaps = 3/594 (0%)

Query: 39   NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
            +G   +  I+M  LG+E+      ++L A  N   L  G+ +H   +K C+   V     
Sbjct: 552  SGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNT 611

Query: 99   LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
            L+  Y+KC  L+ A ++F +M +  +VSWT+ I+AY ++    +A+ LF  M      P+
Sbjct: 612  LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671

Query: 159  EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             +T  +++ +CA +   + G+ +HS +IK+   S++ V ++L++MYAK G + EAR VF 
Sbjct: 672  IYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFS 731

Query: 219  CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             +P +D+VS   +I GY+Q  L  EA+ELF  +Q +    + +T A VL A +GLAAL  
Sbjct: 732  KIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDK 790

Query: 279  GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            G+++H H+LR    S + +  +L+DMY+KCG L  ++ +FD + ++ +ISW  M+ GY  
Sbjct: 791  GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGM 850

Query: 339  HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            HG G E +  FN MR    ++PD  ++  +L+ CSH G+ + G   F+ + + + G EP+
Sbjct: 851  HGFGNEAISTFNEMRIAG-IEPDESSFSVILNACSHSGLLNEGWKFFNSMRN-ECGVEPK 908

Query: 399  IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            +EHY CVVD+L R G + +A +FI++MP +P   I G LL  CR+H++V + E V + + 
Sbjct: 909  LEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIF 968

Query: 459  EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            E+EP+N   YV+L+N+YA A +WE+V ++R+ M+++   ++PG SWIE+    + F A +
Sbjct: 969  ELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 1028

Query: 519  RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
              HP  + +   +++L+++ +   Y      VL + D+ +KE +  GHSEK A+ FG++ 
Sbjct: 1029 SKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILN 1088

Query: 579  TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
             P G  +RV KN R+C DCH   KF+SK   R++ LRD NRFHH  +G CSC D
Sbjct: 1089 LPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 211/397 (53%), Gaps = 7/397 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +RVH +++K  +     +   LI  Y K   +  A  +FDE+ E +VVSW +MI+     
Sbjct: 490 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 549

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
             S   L +FI+ML    E +  T  +VL + A      LG+ +H   +K+ F   +   
Sbjct: 550 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFS 609

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++LLDMY+K G ++ A  VF  + +  +VS T+ I+ Y + GL  +AI LF ++Q +G+ 
Sbjct: 610 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVR 669

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +  T  S++ A +  ++L  G+ VHS+V++  + S + + N+LI+MY+KCGS+  +R V
Sbjct: 670 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 729

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +  + ++SWN M+ GYS++ +  E +ELF  M+++   KPD +T   VL  C+    
Sbjct: 730 FSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ--FKPDDITMACVLPACAGLAA 787

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            D+G  +   I+  + G+  ++ H  C +VDM  + G +  A      +P +   +    
Sbjct: 788 LDKGREIHGHIL--RRGYFSDL-HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 844

Query: 437 LLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILS 472
           + G     + N  I  F   R+  IEP+ +   VIL+
Sbjct: 845 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 208/430 (48%), Gaps = 8/430 (1%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKT--LCSNGQLTKALIEMATLG--LEM 56
            ++P++     S++  +             QN K    C  G L  A IE+ T     E+
Sbjct: 309 FKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKINKFCEMGDLRNA-IELLTKSKSYEL 367

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
               Y ++L  C  +++L  G+RVH+ +I         L  +L+  Y  C  L   RK+F
Sbjct: 368 GLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIF 427

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           D++    V  W  ++S Y++  +  E+++LF +M +     N +TF  VL   A     +
Sbjct: 428 DKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK 487

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             K++H  ++K  F S+  V +SL+  Y K G +  A  +F+ L E DVVS  ++I+G  
Sbjct: 488 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             G     +E+F ++ + G+  +  T  SVL A + +  L  G+ +H   ++      VV
Sbjct: 548 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV 607

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             N+L+DMYSKCG+L  +  VF  M + T++SW + +  Y + G+  + + LF+ M+ + 
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V+PD  T  +++  C+     D+G  V   ++  K+G    +     +++M  + G V 
Sbjct: 668 -VRPDIYTVTSIVHACACSSSLDKGRDVHSYVI--KNGMGSNLPVTNALINMYAKCGSVE 724

Query: 417 EALEFIKNMP 426
           EA      +P
Sbjct: 725 EARLVFSKIP 734


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/559 (40%), Positives = 333/559 (59%), Gaps = 33/559 (5%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF--------------- 147
           Y K   L DAR +FD M ER+ VSW  MIS Y+Q     EA  LF               
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 148 ------------IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                        R+     E N  ++  ++         +  +++   +   N  S   
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW-- 331

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             ++++  YA+ G I +AR  F+ +P+RD +S  AII+GYAQ G  EEA+ LF +++ +G
Sbjct: 332 --NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
              N  T+ S L+  + +AAL  GKQVH  V++  + S   + N+L+ MY KCG++  + 
Sbjct: 390 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 449

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VF+ + E+ V+SWN M+ GY++HG G+E + LF  M++   + PD VT + VLS CSH 
Sbjct: 450 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG-ILPDDVTMVGVLSACSHT 508

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D+G   F+ +     G     +HY C++D+LGRAGR+ +A   +KNMPFEP AA  G
Sbjct: 509 GLVDKGTEYFYSMTQ-DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWG 567

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGA R+H N ++GE   + + E+EP+N+G YV+LSNLYA++GRW DV R+R  M+++ 
Sbjct: 568 ALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRG 627

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K PG SW+E+   +HTF   D  HP R+ +   +++L +K K+ GYV     VL+DV+
Sbjct: 628 VKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVE 687

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+K  +L  HSEKLA+ FG++  P G PIRVIKNLR+C DCHN  K +SK+ GR + LR
Sbjct: 688 EEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILR 747

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH   G CSCGDYW
Sbjct: 748 DSHRFHHFNGGQCSCGDYW 766



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 5/263 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   ++ AR  FD M +R+ +SW A+I+ Y+Q  +  EAL+LF+ M R     N
Sbjct: 334 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLN 393

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             TF + L++CA     ELGKQ+H  ++K+  ES  YVG++LL MY K G I +A  VFE
Sbjct: 394 RSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE 453

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + E++VVS   +I+GYA+ G  +EA+ LF  ++  G++ + VT   VL+A S    +  
Sbjct: 454 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 513

Query: 279 GKQ-VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGY 336
           G +  +S    + I +       +ID+  + G L  ++ +  NM  E    +W A+L   
Sbjct: 514 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 573

Query: 337 SKHG---MGREVVELFNLMREEN 356
             HG   +G +  ++   M  +N
Sbjct: 574 RIHGNTELGEKAAKMIFEMEPDN 596



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 225/563 (39%), Gaps = 96/563 (17%)

Query: 13  SLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQR 72
           SL  T      PS    P+   +L ++  + K  I +      MR  + D+ L    N  
Sbjct: 20  SLQTTTTANRKPSTRNQPKTTSSLATDADIVKWNIAITN---HMRNGQCDSALR-LFNSM 75

Query: 73  TLRGGQRVHAHMIKTCYRPPVY---------LRTRLIVFYN-------KCECLSDARKMF 116
             R     +A MI  C     +         + TR +V +N       +   L  AR +F
Sbjct: 76  PRRSSISWNA-MISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLF 134

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           D+M ER+VVSW AM+S Y+Q  +  EA  +F  M       N  ++  +L +       E
Sbjct: 135 DQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLAAYVQNGRIE 190

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             +++     +S  +  +   + ++  Y K  R+ +ARG+F+ +PERD VS   +ISGYA
Sbjct: 191 DARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 246

Query: 237 QLGLDEEAIELFRKLQVE------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           Q G   EA  LF +  V        M+S YV    +  A      +     V  + +   
Sbjct: 247 QNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAI--- 303

Query: 291 IPSYVVLQ--------------------NSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           I  YV  +                    N++I  Y++ G +  +R  FD M +R  ISW 
Sbjct: 304 IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWA 363

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++ GY++ G G E + LF  M+ + + + +  T+ + LS C+     + G  V   +V 
Sbjct: 364 AIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422

Query: 391 -----------------CKDGF------------EPEIEHYGCVVDMLGRAGRVGEAL-- 419
                            CK G             E E+  +  ++    R G   EAL  
Sbjct: 423 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 482

Query: 420 -EFIKNMPFEPTAAILGSLLGACRVHYNVDIG-EFVGQRLMEIE-PENAGNYVILSNLYA 476
            E +K     P    +  +L AC     VD G E+      +     N+ +Y  + +L  
Sbjct: 483 FESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLG 542

Query: 477 SAGRWEDVTRVRELMKEKAVTKD 499
            AGR +D    + LMK      D
Sbjct: 543 RAGRLDD---AQNLMKNMPFEPD 562



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 11/234 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   G  +    + + L+ C     L  G++VH  ++K       Y+   L+V Y K
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 441

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + DA  +F+ + E+ VVSW  MI+ Y++     EAL LF  M ++   P++ T   V
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 501

Query: 166 LTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L++C+     + G +  +S+       ++    + ++D+  +AGR+ +A+ + + +P E 
Sbjct: 502 LSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 561

Query: 224 DVVSCTAI-----ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           D  +  A+     I G  +LG  E+A ++  +++ +   S      S L A SG
Sbjct: 562 DAATWGALLGASRIHGNTELG--EKAAKMIFEMEPDN--SGMYVLLSNLYAASG 611


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 374/624 (59%), Gaps = 43/624 (6%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +  + GQ++H H++K  +   +Y+ T LI  Y
Sbjct: 75  KLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMY 134

Query: 104 NKCECLSDARK-------------------------------MFDEMRERNVVSWTAMIS 132
            +   L DARK                               +FDE+  ++VVSW AMIS
Sbjct: 135 AQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMIS 194

Query: 133 AYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            Y +  +  EAL LF  M+  ++  P+E T  TV+++CA +   ELG+ +HS I    F 
Sbjct: 195 GYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFA 254

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S++ + ++L+D+Y+K G +  A  +F+ L  +DV+S   +I GY  + L +EA+ LF+++
Sbjct: 255 SNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEM 314

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV---LRFEIPSYVVLQNSLIDMYSKC 308
              G   N VT  S+L A + L A+  G+ +H ++   L+  + +   LQ SLIDMY+KC
Sbjct: 315 LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKC 374

Query: 309 GSLTYSRRVFDN-MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           G +  +++VFD+ MS R++ +WNAM+ G++ HG      ++F+ MR  N ++PD +T++ 
Sbjct: 375 GDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRM-NGIEPDDITFVG 433

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +LS CSH GM D G  +F  +     G+E  P++EHYGC++D+LG +G   EA E I  M
Sbjct: 434 LLSACSHSGMLDLGRNIFRSMTR---GYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 490

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           P EP   I  SLL AC++H N+++GE   ++L++IEP N+G+YV+LSN+YA+AGRW +V 
Sbjct: 491 PMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVA 550

Query: 486 RVRELMKEKAVTKD-PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           ++R L+ +K + K  PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+V
Sbjct: 551 KIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFV 610

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD S VL +++EE +E  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +
Sbjct: 611 PDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLI 670

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTC 628
           SK+Y R++  RD+ RF H  +G C
Sbjct: 671 SKIYKREIIARDRTRFXHFRDGVC 694



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 201/425 (47%), Gaps = 39/425 (9%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           + +HA MIKT      Y  ++L+ F       +    A  +FD ++E N++ W  M   +
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +  +    AL L++ M+     P+ +TF  +L SCA +   + G+QIH  ++K  F+  I
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL--- 251
           YV +SL+ MYA+ GR+ +AR VF+    RDVVS TA+I+GY   G  E A +LF ++   
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 252 ---QVEGMISNYV--------------------------TYASVLTALSGLAALGHGKQV 282
                  MIS YV                          T  +V++A +   ++  G+ V
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           HS +      S + + N+LID+YSK G +  +  +FD +  + VISWN ++ GY+   + 
Sbjct: 245 HSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLY 304

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           +E + LF  M    +  P+ VT L++L  C+H G  D G  +   I     G    +   
Sbjct: 305 KEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 403 -GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH--YNVDIGEFVGQRLME 459
              ++DM  + G +  A +   +     + +   +++    +H   N     F   R+  
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 460 IEPEN 464
           IEP++
Sbjct: 424 IEPDD 428


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/591 (39%), Positives = 357/591 (60%), Gaps = 10/591 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           E  T  LE       +L+  C + R L+   ++ A+ IKT    P  L T+LI F     
Sbjct: 25  EPNTAALEPPSSSILSLIPKCTSLRELK---QIQAYTIKTHQNNPTVL-TKLINFCTSNP 80

Query: 108 CLSD---ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
            ++    A +MFD++ + ++V +  M   Y++      A+ L  ++L S   P+++TF++
Sbjct: 81  TIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSS 140

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +L +CA     E GKQ+H L +K     ++YV  +L++MY     +  AR VF+ + E  
Sbjct: 141 LLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPC 200

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           VV+  AII+  A+     EA+ LFR+LQ  G+    VT    L++ + L AL  G+ +H 
Sbjct: 201 VVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHE 260

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           +V +     YV +  +LIDMY+KCGSL  +  VF +M  R   +W+AM+V Y+ HG G +
Sbjct: 261 YVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQ 320

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + +   M++  KV+PD +T+L +L  CSH G+ + G   FH +   + G  P I+HYGC
Sbjct: 321 AISMLREMKKA-KVQPDEITFLGILYACSHTGLVEEGYEYFHSMTH-EYGIVPSIKHYGC 378

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           ++D+LGRAGR+ EA +FI  +P +PT  +  +LL +C  H NV++ + V QR+ E++  +
Sbjct: 379 MIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSH 438

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            G+YVILSNL A  GRW+DV  +R++M +K   K PG S IE++ ++H F + D  H   
Sbjct: 439 GGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTS 498

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
             L   + +L  + K AGYVPD S V Y D+++E+KE VL  HSEKLA+T+GL+ TP G 
Sbjct: 499 TILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGT 558

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            IRV+KNLR+CVDCHN AKF+S ++GR++ LRD  RFHH  +G CSCGDYW
Sbjct: 559 TIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 366/613 (59%), Gaps = 45/613 (7%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEM 119
           +T L+ C N   L+   R+ + MI T +    +  +RL+ F        L  + ++FD +
Sbjct: 33  ETHLHNCHN---LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRI 89

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              N   W  M+ AY Q   + +AL L+  M++++  P+ +T+  V+ +CA       GK
Sbjct: 90  ENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGK 149

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------------------ 221
           +IH  ++K  F+S +YV ++L++MYA  G + +AR +F+  P                  
Sbjct: 150 EIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKG 209

Query: 222 ----------------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
                           E+D+VS +A+ISGY Q G+ EEA+ +F ++   GM  + V   S
Sbjct: 210 DMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVS 269

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI----DMYSKCGSLTYSRRVFDNM 321
           VL+A + L+ +  GK +H  V+R  I SYV LQN+LI    DMY KCG +  +  VF+ M
Sbjct: 270 VLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGM 329

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            E+ V SWNA+++G + +G+    +++F+ M+  N V P+ +T++ VL  C H G+ D G
Sbjct: 330 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN-NGVIPNEITFMGVLGACRHMGLVDEG 388

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
              F  +++ K G EP ++HYGC+VD+LGRAG + EA + I++MP  P  A  G+LLGAC
Sbjct: 389 RCHFASMIE-KHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGAC 447

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
           + H + ++GE VG++L+E++P++ G +V+LSN++AS G WEDV  VR +MK++ V K PG
Sbjct: 448 KKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPG 507

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            S IE + ++H F A D++HP   ++   + +++ + K  GY PD + V  D+DEE+KE 
Sbjct: 508 CSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKET 567

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
            L  HSEKLA+ FGL+      PIR++KNLRIC DCH  AK +SK Y R++ +RD++RFH
Sbjct: 568 TLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFH 627

Query: 622 HIVEGTCSCGDYW 634
           +  EG CSC DYW
Sbjct: 628 YFKEGACSCMDYW 640



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL   IEM   G+ +      ++L+AC +   ++ G+ +H  +I+      V L
Sbjct: 242 NGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNL 301

Query: 96  RTRLIVFYN----KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           +  LI  Y+    KC C+ +A ++F+ M E+ V SW A+I   +       +L++F  M 
Sbjct: 302 QNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMK 361

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGK-QIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            +   PNE TF  VL +C      + G+    S+I K   E ++     ++D+  +AG +
Sbjct: 362 NNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLL 421

Query: 211 HEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           +EA  + E +P   DV +  A++    + G  E    + RKL
Sbjct: 422 NEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKL 463


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/604 (38%), Positives = 365/604 (60%), Gaps = 35/604 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L+ A     +L  GQ +H   +K+     V++   LI  Y  C  L  A K+F  ++E++
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSW +MI+ + QK    +AL LF +M   D + +  T   VL++CA     E G+Q+ S
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL----------------------- 220
            I ++    ++ + +++LDMY K G I +A+ +F+ +                       
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316

Query: 221 --------PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALS 271
                   P++D+V+  A+IS Y Q G   EA+ +F +LQ++  M  N +T  S L+A +
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            + AL  G+ +HS++ +  I     + ++LI MYSKCG L  SR VF+++ +R V  W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G + HG G E V++F  M+E N VKP+ VT+  V   CSH G+ D   ++FH++ + 
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEAN-VKPNGVTFTNVFCACSHTGLVDEAESLFHQM-ES 494

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE +HY C+VD+LGR+G + +A++FI+ MP  P+ ++ G+LLGAC++H N+++ E
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
               RL+E+EP N G +V+LSN+YA  G+WE+V+ +R+ M+   + K+PG S IE+D ++
Sbjct: 555 MACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLLGHSEKL 570
           H F + D +HPM E++  K+ ++  K K  GY P++S VL  ++EE+ KE+ L  HSEKL
Sbjct: 615 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKL 674

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GLI T     IRVIKNLR+C DCH+ AK +S++Y R++ +RD+ RFHH   G CSC
Sbjct: 675 AICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSC 734

Query: 631 GDYW 634
            D+W
Sbjct: 735 NDFW 738



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 195/375 (52%), Gaps = 28/375 (7%)

Query: 17  TQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           T Q L++P  P N  N     +N + ++ +                +L+  CV+ R L+ 
Sbjct: 6   TAQPLSLPRHP-NFSNPNQPTTNNERSRHI----------------SLIERCVSLRQLK- 47

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
             + H HMI+T      Y  ++L      +    L  ARK+FDE+ + N  +W  +I AY
Sbjct: 48  --QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105

Query: 135 SQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +       ++  F+ M+  S   PN++TF  ++ + A      LG+ +H + +KS   S 
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSD 165

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V +SL+  Y   G +  A  VF  + E+DVVS  ++I+G+ Q G  ++A+ELF+K++ 
Sbjct: 166 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           E + +++VT   VL+A + +  L  G+QV S++    +   + L N+++DMY+KCGS+  
Sbjct: 226 EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIED 285

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++R+FD M E+  ++W  ML GY+         E+ N M ++     D V + A++S   
Sbjct: 286 AKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK-----DIVAWNALISAYE 340

Query: 374 HGGMEDRGLAVFHEI 388
             G  +  L VFHE+
Sbjct: 341 QNGKPNEALIVFHEL 355


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/539 (42%), Positives = 343/539 (63%), Gaps = 8/539 (1%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++  Y K + L  AR+ FD M ER+VVSW AM+S Y+Q   + EAL LF  M+ +  E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIE 257

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+E T+ TV+++C+      L   +   + +   + + +V ++LLDMYAK G +  AR +
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKL 317

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAA 275
           F  +P R+VV+  ++I+GYAQ G    AIELF+++   + +  + VT  SV++A   L A
Sbjct: 318 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 377

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G  V   +   +I   +   N++I MYS+CGS+  ++RVF  M+ R V+S+N ++ G
Sbjct: 378 LELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISG 437

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           ++ HG G E + L + M+E   ++PD VT++ VL+ CSH G+ + G  VF  I D     
Sbjct: 438 FAAHGHGVEAINLMSTMKE-GGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----- 491

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P I+HY C+VD+LGR G + +A   ++ MP EP A + GSLL A R+H  V++GE    
Sbjct: 492 -PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAAN 550

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           +L E+EP+N+GN+++LSN+YASAGRW+DV R+RE MK+  V K  G SW+E    LH F 
Sbjct: 551 KLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFI 610

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
            +DRSH   +++   + +L  K +EAGY+ D SCVL DV+EE+KE+++  HSEKLA+ + 
Sbjct: 611 VADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYA 670

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ +  GA IRV+KNLR+C DCH   K +SK+ GR + +RD NRFH   +G CSC DYW
Sbjct: 671 LLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 47/354 (13%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISA 133
           GG   HAH++K  +    ++R  +I  Y +   +  ARK+FDE+   ER V  W AM+S 
Sbjct: 113 GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y +     +A  LF  M     E N  T+  ++T                          
Sbjct: 173 YWKWESEGQAQWLFDVM----PERNVITWTAMVTG------------------------- 203

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
                     YAK   +  AR  F+C+PER VVS  A++SGYAQ GL EEA+ LF ++  
Sbjct: 204 ----------YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVN 253

Query: 254 EGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
            G+  +  T+ +V++A S  G   L        H  R ++  +V  + +L+DMY+K G L
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFV--RTALLDMYAKFGDL 311

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             +R++F+ M  R V++WN+M+ GY+++G     +ELF  M    K+ PD VT ++V+S 
Sbjct: 312 DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 371

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           C H G  + G  V   + +  +  +  I  +  ++ M  R G + +A    + M
Sbjct: 372 CGHLGALELGNWVVRFLTE--NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 16/297 (5%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L     NG   +AL    EM   G+E     + T+++AC    + RG   + A +++T +
Sbjct: 232 LSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISAC----SSRGDPCLAASLVRTLH 287

Query: 90  RPPV----YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           +  +    ++RT L+  Y K   L  ARK+F+ M  RNVV+W +MI+ Y+Q   S  A+ 
Sbjct: 288 QKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 347

Query: 146 LFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           LF  M+ +    P+E T  +V+++C      ELG  +   + ++  +  I   ++++ MY
Sbjct: 348 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 407

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           ++ G + +A+ VF+ +  RDVVS   +ISG+A  G   EAI L   ++  G+  + VT+ 
Sbjct: 408 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 467

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
            VLTA S    L  G++V   +    I  Y      ++D+  + G L  ++R  + M
Sbjct: 468 GVLTACSHAGLLEEGRKVFESIKDPAIDHYAC----MVDLLGRVGELEDAKRTMERM 520



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 37/263 (14%)

Query: 166 LTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA-GRIHEARGVFECLPER 223
           L S A   G F   +Q+H+ II ++   H Y  + L++   +     H    +F      
Sbjct: 4   LGSIASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNP 63

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V   T+++  Y+ L    + + ++ ++Q  G+  +   Y  +L   +G   +G     H
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVY-PILIKSAGTGGIG----FH 118

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGM 341
           +HVL+    S   ++N++IDMY++ G + ++R+VFD +   ER V  WNAM+ GY K   
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 342 GREVVELFNLMREEN------------KVK------------PDS--VTYLAVLSGCSHG 375
             +   LF++M E N            KVK            P+   V++ A+LSG +  
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQN 238

Query: 376 GMEDRGLAVFHEIVDCKDGFEPE 398
           G+ +  L +F E+V+   G EP+
Sbjct: 239 GLAEEALRLFDEMVNA--GIEPD 259



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G  V   + +   +  +     +I  Y++C  + DA+++F EM  R
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVS+  +IS ++   H  EA+NL   M     EP+  TF  VLT+C+ A   E G+++ 
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             I     + +    + ++D+  + G + +A+   E +P
Sbjct: 487 ESIKDPAIDHY----ACMVDLLGRVGELEDAKRTMERMP 521


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 365/595 (61%), Gaps = 12/595 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +GL M    +  ++ AC N   L   +++H+    + +   V ++  L+ +Y+K  
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 108 CLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            L +A  +F+ M E  R+ VSW +MI AY Q     +AL L+  M+    E + FT A+V
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR-IHEARGVFECLPERD 224
           LT+ +       G Q H+  IK+ F  + +VGS L+DMYAK G  + E+R VFE +   D
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD 307

Query: 225 VVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V    +ISGY+Q   L  EA+E FR++Q  G   +  ++   ++A S L++   GKQ H
Sbjct: 308 LVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFH 367

Query: 284 SHVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           +  ++ EIPS  + + N+L+ MYSKCG+L  +R++F  M +   ++ N+++ GY++HG+G
Sbjct: 368 ALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIG 427

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E + LF  M   + + P S+T +++LS C+H G  + G   F+ + D   G EPE EHY
Sbjct: 428 TESLNLFEQMLAAS-IAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIF-GIEPEAEHY 485

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            C++D+LGRAG++ EA   I  MPF P +A   +LLGACR + N+++ E    + +++EP
Sbjct: 486 SCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEP 545

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
            NA  Y++L+++Y++A +WE+  R+R+LM+++ + K PG SWIEL++ +H F A D SHP
Sbjct: 546 TNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHP 605

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD---EEQKEKVLLGHSEKLALTFGLIGT 579
             +E+   + ++ VK K AGYVPD+       D   E++KE +L  HSEKLA+ FGL+ T
Sbjct: 606 RIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFT 665

Query: 580 PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             G P+ V+KNLRIC DCHN  KF+S +  RK+++RD  RFH   +G CSCGDYW
Sbjct: 666 KHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 50/292 (17%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS---------------------- 198
           +F  +L SC        GK +H++ +KS   S  Y+ +                      
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 199 ---------SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
                    +L+  YAK   IH A  +F+ +P+ D+VS   +I+ YA  G    A+ LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++  G++ +  T++ V+TA      +G  +Q+HS        SYV ++NSL+  YSK G
Sbjct: 130 EMREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 310 SLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            L  +  VF+ M E  R  +SWN+M+V Y +H  G + + L+  M      + D  T  +
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRG-FEIDMFTLAS 246

Query: 368 VLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDMLGRAG 413
           VL+  S      GG++    A+       K GF     H G  ++DM  + G
Sbjct: 247 VLTTFSCVEDLSGGLQFHAKAI-------KTGFNKN-RHVGSGLIDMYAKCG 290


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 373/625 (59%), Gaps = 19/625 (3%)

Query: 11  FSSLTFTQQ-QLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACV 69
           FSS + + Q  +   S  P P + ++ CS+              L    + + + L +C 
Sbjct: 18  FSSASLSWQFDVNCNSNEPTPCSQESECSHV-------------LHYDTKRFRSSLLSCR 64

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           N   +R   +VHA +        + +  +L+  Y +   L DA+++FD M +R+  SW+ 
Sbjct: 65  NLFQVR---QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSV 121

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           ++  Y++  + F    +F  +LRS    ++++   V+ +C      + G+ IH + +K  
Sbjct: 122 IVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCG 181

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +   +V ++L+DMYA+   + +A  +F  + +RD+ + T +I   A+ G+  E++  F 
Sbjct: 182 LDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFD 241

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++ +G++ + V   +V+ A + L A+   K +H+++        V+L  ++IDMY+KCG
Sbjct: 242 RMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCG 301

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  +R +FD M  R VI+W+AM+  Y  HG G + +ELF +M     + P+ +T++++L
Sbjct: 302 SVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSG-ILPNRITFVSLL 360

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             CSH G+ + G   F  + D + G  P+++HY C+VD+LGRAGR+ EALE I+ MP E 
Sbjct: 361 YACSHAGLIEEGQRFFSSMWD-EYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEK 419

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              + G+LLGACR+H ++D+ E V + L++++ +  G+YV+LSN+YA+AG+WED+ + R+
Sbjct: 420 DEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRD 479

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           LM +  + K PGR+WIE+ + L+ F   D++HP   E+   +K+L  K + AGY PD + 
Sbjct: 480 LMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTND 539

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VLYDVDEE K+ +L  HSEKLA+ FGL+  P+G PIR+ KNLR+C DCH F KFVS +  
Sbjct: 540 VLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQ 599

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           + + +RD  RFHH  EG CSC DYW
Sbjct: 600 KTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 358/646 (55%), Gaps = 38/646 (5%)

Query: 24  PSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAH 83
           PS PP   ++  L  +  L   L  ++  G       Y  +         L+ G +VHAH
Sbjct: 37  PSSPPFKCSISPLTISATLQNLLQPLSAPG-PPPILSYAPVFQFLTGLNMLKLGHQVHAH 95

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           M+    +P   + ++++ FY     +  +  +F+ + E + + + +MI AY++   +   
Sbjct: 96  MLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERT 155

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           +  +  M       + FTF  VL S        +GK +H LI++   +  +YV +SL+ +
Sbjct: 156 VATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIIL 215

Query: 204 YAKAGRIHEAR-------------------------------GVFECLPERDVVSCTAII 232
           Y K G I++A                                 +FE +P R++VS T +I
Sbjct: 216 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMI 275

Query: 233 SGYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           SGY+Q GL ++A+ LF ++  E  G+  N+VT  SVL A + L+ L  G+Q+H    R  
Sbjct: 276 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 335

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFD--NMSERTVISWNAMLVGYSKHGMGREVVEL 348
           + S   +  +L  MY+KCGSL  +R  FD  N +E+ +I+WN M+  Y+ +G G + V  
Sbjct: 336 LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 395

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M +   ++PD +T+  +LSGCSH G+ D GL  F+ +        P +EHY CV D+
Sbjct: 396 FREMIQAG-IQPDDITFTGLLSGCSHSGLVDVGLKYFNHM-STTYSINPRVEHYACVADL 453

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA + +  MP     +I GSLL ACR H N+++ E   ++L  +EPEN GNY
Sbjct: 454 LGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNY 513

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YA AGRW++V ++R ++K +   K PG SWIE++   H F   D SHP  +E+ 
Sbjct: 514 VLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIY 573

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++ L  K K AGY PD S VL+D+ EE+KE  L+ HSEKLA+ FG++ TP    +RV 
Sbjct: 574 MFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVT 633

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRIC DCH    F+S++YGR+V +RD NRFHH   G CSCGDYW
Sbjct: 634 KNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/548 (41%), Positives = 343/548 (62%), Gaps = 24/548 (4%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +   +S+ARK+FD+M ERNVVSWTAMI  Y Q+    EA  LF RM     E N
Sbjct: 31  LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM----PERN 86

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L         +  +Q+  ++   +    +   ++++D     GR+ EAR +F+
Sbjct: 87  VVSWTVMLGGLIEDGRVDEARQLFDMMPVKD----VVASTNMIDGLCSEGRLIEAREIFD 142

Query: 219 CLPERDVVSCTAIISG-------------YAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
            +P+R+VV+ T++ISG             Y + G + EA+ LF  +Q EG+  ++ +  S
Sbjct: 143 EMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVIS 202

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL+    LA+L HG+QVHS ++R +    + + + LI MY KCG L  ++RVFD  S + 
Sbjct: 203 VLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKD 262

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           ++ WN+++ GY++HG G + +E+F+ M   + + PD +T++ VLS CS+ G    GL +F
Sbjct: 263 IVMWNSIIAGYAQHGFGEKALEVFHDMFS-SSIAPDEITFIGVLSACSYTGKVKEGLEIF 321

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
            E +  K   +P+ EHY C+VD+LGRAG++ EA+  I+NMP E  A + G+LLGACR H 
Sbjct: 322 -ESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHK 380

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           N+D+ E   ++L+++EP NAG Y++LSNLY+S  RW+DV  +R+ M+ K + K PG SWI
Sbjct: 381 NLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWI 440

Query: 506 ELDQILHTFH-ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           E+D+ +H F      SHP  E +  K+ +L    +EAGY PD S V++DVDEE+K   L 
Sbjct: 441 EVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLR 500

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLA+ +GL+  PEG PIRV+KNLR+C D H+  K +++V GR++ LRD NRFHH  
Sbjct: 501 DHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFK 560

Query: 625 EGTCSCGD 632
           +G CSC D
Sbjct: 561 DGLCSCSD 568



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 24/236 (10%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           E++    + L+  Y + G I EAR VF+ +PER+VVS TA+I GY Q GL EEA  LF +
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWR 81

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +       N V++  +L  L     +   +Q+   +   +    VV   ++ID     G 
Sbjct: 82  MPER----NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKD----VVASTNMIDGLCSEGR 133

Query: 311 LTYSRRVFDNMSERTVISWNAMLVG-------------YSKHGMGREVVELFNLMREENK 357
           L  +R +FD M +R V++W +M+ G             Y + G   E + LF+LM+ E  
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREG- 192

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
           V+P   + ++VLS C      D G  V  ++V  +  F+ +I     ++ M  + G
Sbjct: 193 VRPSFPSVISVLSVCGSLASLDHGRQVHSQLV--RSQFDIDIYVSSVLITMYIKCG 246



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 3/209 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+   F    ++L+ C +  +L  G++VH+ ++++ +   +Y+ + LI  Y KC  
Sbjct: 188 MQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGD 247

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A+++FD    +++V W ++I+ Y+Q     +AL +F  M  S   P+E TF  VL++
Sbjct: 248 LVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSA 307

Query: 169 CAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVV 226
           C+     + G +I  S+  K   +      + ++D+  +AG+++EA  + E +P E D +
Sbjct: 308 CSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAI 367

Query: 227 SCTAIISG-YAQLGLDEEAIELFRKLQVE 254
              A++        LD   I   + LQ+E
Sbjct: 368 VWGALLGACRTHKNLDLAEIAAKKLLQLE 396



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R++FD M E   ISWN ++ GY ++GM  E  ++F+ M E N      V++ A++ G  
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERN-----VVSWTAMIRGYV 67

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
             G+ +    +F  +       E  +  +  ++  L   GRV EA +    MP +   A 
Sbjct: 68  QEGLIEEAELLFWRMP------ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121

Query: 434 LGSLLGAC 441
              + G C
Sbjct: 122 TNMIDGLC 129


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 367/626 (58%), Gaps = 57/626 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC + + L   + +H++ I+       ++   LI  Y KC  ++DA K+F+ M  +
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 123 NVVSWTAMISAYSQKAH-----------------------------------SFEALNLF 147
           +VVSW AM++ Y+Q  +                                   S EAL+ F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------HIY 195
            +M+   +EPN  T  ++L++CA       G +IH+  +K    S             + 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKL-- 251
           V ++L+DMY+K      AR +F+ +P  ER+VV+ T +I GYAQ G   +A+++F ++  
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKC 308
           +   +  N  T + +L A + LAAL  GKQ+H++V R   +E PS   + N LIDMYSKC
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYE-PSVYFVANCLIDMYSKC 562

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  +R VFD+M +R  +SW +M+ GY  HG G+E +++F+ M++   V PD +++L +
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV-PDDISFLVL 621

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L  CSH GM D+GL  F +I+          EHY CV+D+L R GR+ +A + I+ MP E
Sbjct: 622 LYACSHSGMVDQGLNYF-DIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPME 680

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           P+A I  +LL ACRVH NV++ E+   +L+ ++ EN G+Y ++SN+YA+A RW+DV R+R
Sbjct: 681 PSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIR 740

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
           +LMK+  + K PG SW++  +   +F   DRSHP+  E+ + +++L  + K  GYVP+ +
Sbjct: 741 QLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETN 800

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
             L+DVD+E+K  +L  HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+ 
Sbjct: 801 FALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIV 860

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
             ++ +RD +RFHH   G+CSCG YW
Sbjct: 861 DHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 208/422 (49%), Gaps = 61/422 (14%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER-- 122
           L AC    +   G+ +H  +    +   V++   L+  Y++C  L DA  +FDE+  +  
Sbjct: 156 LKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGI 215

Query: 123 -NVVSWTAMISAYSQKAHSFEALNLF--IRMLRSDTEPNE----FTFATVLTSCAGAFGF 175
            +V+SW ++++A+ + ++   AL LF  + M+  +   NE     +   +L +CA     
Sbjct: 216 DDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS-------- 227
              K+IHS  I++   +  +V ++L+D YAK G +++A  VF  +  +DVVS        
Sbjct: 276 PQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGY 335

Query: 228 ---------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
                                       +A+I+GYAQ G  +EA++ F+++ ++G   N 
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY------------VVLQNSLIDMYSKC 308
           VT  S+L+A + L AL  G ++H++ L+  + S             +++ N+LIDMYSKC
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455

Query: 309 GSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTY 365
            S   +R +FD++   ER V++W  M+ GY+++G   + +++F+ ++ +   V P++ T 
Sbjct: 456 RSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTI 515

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKN 424
             +L  C+H      G  + H  V     +EP +     C++DM  + G V  A     +
Sbjct: 516 SCILMACAHLAALRMGKQI-HAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 425 MP 426
           MP
Sbjct: 575 MP 576



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 171/319 (53%), Gaps = 12/319 (3%)

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           Y  P  L T ++  Y  C    DA  + + +     V W  ++  + ++ H   A+ +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RMLR+ T+P+ FT    L +C     +  G+ +H LI  + FES+++V ++L+ MY++ G
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG 198

Query: 209 RIHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKL------QVEGMISN 259
            + +A  VF+ +  +   DV+S  +I++ + +      A+ELF ++      +     S+
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            ++  ++L A + L AL   K++HS+ +R    +   + N+LID Y+KCGS+  + +VF+
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  + V+SWNAM+ GY++ G      ELF  MR+EN +  D +T+ AV++G +  G   
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN-IPLDVITWSAVIAGYAQRGCSQ 377

Query: 380 RGLAVFHEIVDCKDGFEPE 398
             L  F +++   DG EP 
Sbjct: 378 EALDAFQQMI--LDGSEPN 394



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 21/323 (6%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY------- 89
           CS   L  A  +M   G E       +LL+AC +   L  G  +HA+ +K C        
Sbjct: 375 CSQEAL-DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDF 433

Query: 90  -----RPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFE 142
                   + +   LI  Y+KC     AR +FD +  RERNVV+WT MI  Y+Q   S +
Sbjct: 434 GGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSND 493

Query: 143 ALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIY-VGS 198
           AL +F  M+       PN +T + +L +CA      +GKQIH+ + + + +E  +Y V +
Sbjct: 494 ALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVAN 553

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
            L+DMY+K G +  AR VF+ +P+R+ VS T+++SGY   G  +EA+++F K+Q  G + 
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVP 613

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           + +++  +L A S    +  G      + R +++ +       +ID+ ++CG L  + + 
Sbjct: 614 DDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKT 673

Query: 318 FDNMS-ERTVISWNAMLVGYSKH 339
              M  E + + W A+L     H
Sbjct: 674 IQEMPMEPSAVIWVALLSACRVH 696


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 354/589 (60%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M + GL        ++L AC        G+++H  MIK       Y+   L+  Y K
Sbjct: 291 LLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK 350

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L DA K+FD M  R+++ W A+IS  S      EA ++F  + +     N  T A V
Sbjct: 351 NHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAV 410

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A        +Q+H+L  K  F    +V + L+D Y K   + +A  VFE     D+
Sbjct: 411 LKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 470

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++ T++I+  +Q    E AI+LF ++  +G+  +    +S+L A + L+A   GKQVH+H
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++ +  S     N+L+  Y+KCGS+  +   F ++ ER V+SW+AM+ G ++HG G+  
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +ELF  M +E  + P+ +T  +VL  C+H G+ D     F+ + +   G +   EHY C+
Sbjct: 591 LELFGRMVDEG-INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF-GIDRTEEHYSCM 648

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++ +A+E + +MPF+  A++ G+LLGA RVH + ++G+   ++L  +EPE +
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N YAS+G W +V +VR+LMK+  + K+P  SW+E+   +HTF   D+SHPM +
Sbjct: 709 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTK 768

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ +K+ +L     +AGY+P++   L+D+D  +KE +L  HSE+LA+ F L+ TP GAPI
Sbjct: 769 EIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPI 828

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+S +  R++ +RD NRFHH  +GTCSCGDYW
Sbjct: 829 RVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 170/303 (56%), Gaps = 4/303 (1%)

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVS 126
           CV    L  G +VHA  + T +   V++   L+  Y     + DAR++FDE   ERN VS
Sbjct: 112 CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 169

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W  ++SAY +     +A+ +F  M+ S  +P EF F+ V+ +C G+   + G+Q+H++++
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 229

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +  +E  ++  ++L+DMY K GR+  A  +FE +P+ DVVS  A+ISG    G D  AIE
Sbjct: 230 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 289

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           L  +++  G++ N    +S+L A +G  A   G+Q+H  +++    S   +   L+DMY+
Sbjct: 290 LLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYA 349

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           K   L  + +VFD MS R +I WNA++ G S  G   E   +F  +R+E  +  +  T  
Sbjct: 350 KNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG-LGVNRTTLA 408

Query: 367 AVL 369
           AVL
Sbjct: 409 AVL 411



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G  +HA+++K+ +     LR  LI FY+KC     AR++FDE+ +   VSW++++
Sbjct: 18  QALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLV 75

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +AYS       A+  F  M       NEF    VL     A   +LG Q+H++ + + F 
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---QLGAQVHAMAMATGFG 132

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           S ++V ++L+ MY   G + +AR VF E   ER+ VS   ++S Y +     +AI++F +
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +   G+      ++ V+ A +G   +  G+QVH+ V+R      V   N+L+DMY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +  +F+ M +  V+SWNA++ G   +G     +EL   M+    V P+     ++L 
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV-PNVFMLSSILK 311

Query: 371 GCSHGGMEDRG 381
            C+  G  D G
Sbjct: 312 ACAGAGAFDLG 322


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 342/575 (59%), Gaps = 2/575 (0%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + + L+  C   + L  G+R+H  M       P +L   L+  Y KC  L +A+++FD M
Sbjct: 43  DLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAM 102

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           + +NV SWT +++ + Q     EA+ LF RM +    P+       + SC  A     G+
Sbjct: 103 QHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGR 162

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IHS       +S +   +++++MY K G I EA  VF  +PE++V+S + +I+ + Q  
Sbjct: 163 EIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNE 222

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L +EA+  F+ +Q EGM  + +TY SVL A + + AL  GK +H  ++   + + +V+ N
Sbjct: 223 LADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGN 282

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L++MY KCGS   +R VFD+M E+ V+SWNAML  Y ++G  RE + LF+ M  E  V+
Sbjct: 283 TLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEG-VR 341

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ +T++ +L  CSH G     ++ F E+     G  P   H+GC++DMLGR+G++ EA 
Sbjct: 342 PNDITFVTILYCCSHSGKFKDAVSHFVEMRQ-DFGITPREVHFGCLIDMLGRSGKLEEAE 400

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           E I+ MP    A +  SLL AC  H + D      +   + EP  A  Y++LSNLYA+  
Sbjct: 401 ELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALK 460

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +W++  +VR+ M++  V K  GRSWIE+D+ +H F A D  HP +  +   +++L  + +
Sbjct: 461 KWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMR 520

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GY PD   V++ ++EE+K++VL  HSEKLA+ FG+  TP   P+ ++KNLR+C DCH+
Sbjct: 521 IKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHS 580

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             KF+S V GR++++RD NRFHH   G CSCGDYW
Sbjct: 581 AIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 9/207 (4%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +   C N    +AL+    M   G+E+    Y ++L+A  +   L  G+ +H  ++    
Sbjct: 215 IAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGL 274

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              + +   L+  Y KC    DAR +FD M E+NVVSW AM++AY Q   S EAL LF  
Sbjct: 275 DTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDS 334

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF---ESHIYVGSSLLDMYAK 206
           M      PN+ TF T+L  C+ +  F+     H + ++ +F      ++ G  L+DM  +
Sbjct: 335 MDLEGVRPNDITFVTILYCCSHSGKFKDAVS-HFVEMRQDFGITPREVHFG-CLIDMLGR 392

Query: 207 AGRIHEARGVFECLP-ERDVVSCTAII 232
           +G++ EA  + + +P   D V  T+++
Sbjct: 393 SGKLEEAEELIQAMPVPADAVLWTSLL 419


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/700 (35%), Positives = 392/700 (56%), Gaps = 86/700 (12%)

Query: 16  FTQQQLTVPSFP-PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEY----DT-----LL 65
           F    L + S P P   +  +L     LTKA +   ++G+  R   +    DT     L 
Sbjct: 66  FNDADLILQSIPDPTVYSFSSLIY--ALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLF 123

Query: 66  NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER--- 122
             C      + G+++H     +      +++  L   Y +C  + DARK+FD M E+   
Sbjct: 124 KVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVV 183

Query: 123 --------------------------------NVVSWTAMISAYSQKAHSFEALNLFIRM 150
                                           N+VSW  ++S +++  +  EA+ +F +M
Sbjct: 184 TCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM 243

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                 P++ T ++VL S   +    +G+QIH  +IK        V S++LDMY K+G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHV 303

Query: 211 H----------------------------------EARGVF-ECLPERDVVSCTAIISGY 235
           +                                  E  G+F E   E +VVS T+II+G 
Sbjct: 304 YGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGC 363

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           AQ G D EA+ELFR++QV G+  N VT  S+L A   +AALGHG+  H   +R  +   V
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDV 423

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMRE 354
            + ++LIDMY+KCG +  S+ VF+ M  + ++ WN+++ GYS HG  +EV+ +F +LMR 
Sbjct: 424 HVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMR- 482

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             ++KPD +++ ++LS C   G+ D G   F+ + + + G +P +EHY C+V++LGRAG+
Sbjct: 483 -TRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSE-EYGIKPRLEHYSCMVNLLGRAGK 540

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA + IK +PFEP + + G+LL +CR+  NVD+ E   Q+L  +EPEN G YV++SN+
Sbjct: 541 LQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNI 600

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA+ G W +V  +R  M+   + K+PG SWI++   ++T  A D+SHP  ++++ K+ ++
Sbjct: 601 YAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEI 660

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
           S + +++G+ P++   L DV+E+++E++L GHSEKLA+ FGL+ TP+G P++VIKNLRIC
Sbjct: 661 SEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRIC 720

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH   KF+S   GR++ +RD NRFHH  +G CSCGD+W
Sbjct: 721 GDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 171/345 (49%), Gaps = 36/345 (10%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           + HA ++K+  +   Y+  +LI  Y+   C +DA  +   + +  V S++++I A ++  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +++ +F RM      P+      +   CA    F+ GKQIH +   S  +   +V  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE---------------- 242
           SL  MY + GR+ +AR VF+ + E+DVV+C+A++ GYA+ G  E                
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 243 -------------------EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
                              EA+ +F+K+   G   + VT +SVL ++     L  G+Q+H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            +V++  +     + ++++DMY K G +    ++FD          NA + G S++G+  
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           + +E+F L +E+ K++ + V++ ++++GC+  G +   L +F E+
Sbjct: 336 KALEMFGLFKEQ-KMELNVVSWTSIIAGCAQNGKDIEALELFREM 379


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 329/536 (61%), Gaps = 2/536 (0%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   L  ARK+FDEM  RNV +W AM++  +    + E+L  F  M R   +P+
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E+   ++   CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + +      
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            LP  ++VSC   ISG  Q G  E A+E F  ++  G+ +N VT+ S +T+ S LAAL  
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+Q+H+  ++  +   V +  SL+ MYS+CG L  S RV    S   ++  +AM+  Y  
Sbjct: 186 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 245

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G++ V LF  M      +P+ VT+L +L  CSH G++D G+  F E++    G +P 
Sbjct: 246 HGHGQKAVGLFKQMMAAG-AEPNEVTFLTLLYACSHSGLKDEGMNCF-ELMTKTYGLQPS 303

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           ++HY C+VD+LGR+G + EA + I +MP +P   I  +LL AC+     D+ E + +R++
Sbjct: 304 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E++P ++ +YV+LSN+ A++ RWEDV++VRE M+E+ V K+PG SW+EL   +H F   D
Sbjct: 364 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 423

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            SH  + E+   ++++  + ++ GY PDMS V +D+++E+KE  L  HSEKLA+ F  + 
Sbjct: 424 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 483

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PEG PIRV+KNLR+C DCH   K +SKV GR++ +RD +RFHH  +G CSCGDYW
Sbjct: 484 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 56  MRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           M+ +EY   +L   C   R +  G++VHA+++++     + + + L   Y +C  L D  
Sbjct: 62  MQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 121

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
                +   N+VS    IS  +Q   +  AL  F  M  +  E N  TF + +TSC+   
Sbjct: 122 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 181

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
               G+QIH+L IK+  +  + V +SL+ MY++ G + ++  V       D+V C+A+IS
Sbjct: 182 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 241

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            Y   G  ++A+ LF+++   G   N VT+ ++L A S
Sbjct: 242 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACS 279



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     + + + +C +   L  GQ++HA  IKT     V + T L+  Y++C C
Sbjct: 158 MRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGC 217

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++  E    ++V  +AMISAY    H  +A+ LF +M+ +  EPNE TF T+L +
Sbjct: 218 LGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYA 277

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   + G     L+ K+   +  +   + ++D+  ++G ++EA  +   +P
Sbjct: 278 CSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMP 331



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N LI  Y K G L  +R++FD M  R V +WNAM+ G +  G+  E +  F  MR E  +
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREG-M 62

Query: 359 KPDSVTYLAVLSGCSHGGMED 379
           +PD     ++   C+  G+ D
Sbjct: 63  QPDEYGLGSLFRCCA--GLRD 81


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 322/526 (61%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  ARK+FDEM ERNV +W AM++  +      E+L  F+ M R    P+EF   +V   
Sbjct: 185 LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRC 244

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + E   V   LP   +VSC
Sbjct: 245 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 304

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             II+G  Q G  E A+E F  ++  G+ ++ VT+ S +++ S LAAL  G+Q+H  V++
Sbjct: 305 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 364

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V +   L+ MYS+CG L  S RVF           +AM+  Y  HG G++ +EL
Sbjct: 365 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 424

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M      +P  VT+LA+L  CSH G+++ G+  F E++    G +P ++HY CVVD+
Sbjct: 425 FKQMMN-GGAEPSDVTFLALLYACSHSGLKEEGMDCF-ELMTKTYGMQPSVKHYTCVVDL 482

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I +MP  P   I  +LL AC+   N D+ E + +R++E++P ++ +Y
Sbjct: 483 LGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASY 542

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+ A++ RW DV+ VR+ M++  V K+PG SW+EL   +H F   D SHP ++E+ 
Sbjct: 543 VLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEID 602

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++++  K ++ GY PDMS VL+D+++E+KE  L  HSEKLA+ F  +  PEG PIRV+
Sbjct: 603 ECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVM 662

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S+V GR++ +RD +RFHH  +G CSC DYW
Sbjct: 663 KNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 34/271 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS----------- 227
           +Q+H+    S   +  +  + L+  YA  G +  AR +FE +P R+V+S           
Sbjct: 123 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 182

Query: 228 --------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+++G   LG DEE++  F  ++ EGM  +     SV 
Sbjct: 183 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 242

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              +GL  +  G+QVH++V+R  +   + + +SL  MY +CG L     V   +   +++
Sbjct: 243 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 302

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           S N ++ G +++G     +E F +MR    V  D VT+++ +S CS      +G  +  +
Sbjct: 303 SCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISSCSDLAALAQGQQIHGQ 361

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           ++  K G +  +    C+V M  R G +G++
Sbjct: 362 VM--KAGVDKVVPVMTCLVHMYSRCGCLGDS 390



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++   C   R +  G++VHA+++++     + + + L   Y +C CL +   +   +   
Sbjct: 240 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 299

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VS   +I+  +Q   S  AL  F  M       +  TF + ++SC+       G+QIH
Sbjct: 300 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 359

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++K+  +  + V + L+ MY++ G + ++  VF      D    +A+IS Y   G  +
Sbjct: 360 GQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 419

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALS 271
           +AIELF+++   G   + VT+ ++L A S
Sbjct: 420 KAIELFKQMMNGGAEPSDVTFLALLYACS 448



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G+      + + +++C +   L  GQ++H  ++K      V + T L+  Y++C C
Sbjct: 327 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 386

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++F      +    +AMISAY    H  +A+ LF +M+    EP++ TF  +L +
Sbjct: 387 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 446

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   E G     L+ K+   +  +   + ++D+  ++G + EA  +   +P
Sbjct: 447 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP 500



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%)

Query: 244 AIELFRKLQ----VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           A+   R+L       G  ++  T   ++ A + L  L   +++   + R  + S+    N
Sbjct: 118 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSW----N 173

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L   Y K G L  +R++FD M ER V +WNAM+ G +  G   E +  F  MR E  + 
Sbjct: 174 ILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREG-MH 232

Query: 360 PDSVTYLAVLSGCSHGGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           PD     +V   C+  G+ D   G  V   +V  + G + ++     +  M  R G + E
Sbjct: 233 PDEFGLGSVFRCCA--GLRDVVTGRQVHAYVV--RSGLDRDMCVGSSLAHMYMRCGCLQE 288

Query: 418 ALEFIKNMP 426
               ++ +P
Sbjct: 289 GEAVLRMLP 297


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 329/536 (61%), Gaps = 2/536 (0%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   L  ARK+FDEM  RNV +W AM++  +    + E+L  F  M R   +P+
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E+   ++   CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + +      
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 233

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            LP  ++VSC   ISG  Q G  E A+E F  ++  G+ +N VT+ S +T+ S LAAL  
Sbjct: 234 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 293

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+Q+H+  ++  +   V +  SL+ MYS+CG L  S RV    S   ++  +AM+  Y  
Sbjct: 294 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 353

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G++ V LF  M      +P+ VT+L +L  CSH G++D G+  F E++    G +P 
Sbjct: 354 HGHGQKAVGLFKQMMAAG-AEPNEVTFLTLLYACSHSGLKDEGMNCF-ELMTKTYGLQPS 411

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           ++HY C+VD+LGR+G + EA + I +MP +P   I  +LL AC+     D+ E + +R++
Sbjct: 412 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 471

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E++P ++ +YV+LSN+ A++ RWEDV++VRE M+E+ V K+PG SW+EL   +H F   D
Sbjct: 472 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 531

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            SH  + E+   ++++  + ++ GY PDMS V +D+++E+KE  L  HSEKLA+ F  + 
Sbjct: 532 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 591

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PEG PIRV+KNLR+C DCH   K +SKV GR++ +RD +RFHH  +G CSCGDYW
Sbjct: 592 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 56  MRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           M+ +EY   +L   C   R +  G++VHA+++++     + + + L   Y +C  L D  
Sbjct: 170 MQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 229

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
                +   N+VS    IS  +Q   +  AL  F  M  +  E N  TF + +TSC+   
Sbjct: 230 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 289

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
               G+QIH+L IK+  +  + V +SL+ MY++ G + ++  V       D+V C+A+IS
Sbjct: 290 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 349

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            Y   G  ++A+ LF+++   G   N VT+ ++L A S
Sbjct: 350 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACS 387



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 39/295 (13%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           +EP    F+ +  +C       L +Q+H+    S   +  +  + LL  YA  G    AR
Sbjct: 43  SEPG--LFSHIFRACQA---LPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTAR 97

Query: 215 GVFECLPERDVVSCTAIISGYAQ-------------------------------LGLDEE 243
           G+FE +P+R+V+S   +I GY +                                GL+EE
Sbjct: 98  GLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEE 157

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           ++  F  ++ EGM  +     S+    +GL  +  G+QVH++V+R  +   + + +SL  
Sbjct: 158 SLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAH 217

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY +CG L         +    ++S N  + G +++G     +E F LMR    V+ ++V
Sbjct: 218 MYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG-VEANAV 276

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           T+++ ++ CS      +G  +    +  K G +  +     +V M  R G +G++
Sbjct: 277 TFVSAVTSCSDLAALAQGQQIHALAI--KTGVDKVVPVMTSLVHMYSRCGCLGDS 329



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     + + + +C +   L  GQ++HA  IKT     V + T L+  Y++C C
Sbjct: 266 MRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGC 325

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++  E    ++V  +AMISAY    H  +A+ LF +M+ +  EPNE TF T+L +
Sbjct: 326 LGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYA 385

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   + G     L+ K+   +  +   + ++D+  ++G ++EA  +   +P
Sbjct: 386 CSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMP 439


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/562 (39%), Positives = 347/562 (61%), Gaps = 4/562 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ +HA+ IK  +   + +   LI  Y KC C+S   + FD M  ++++SWT   + 
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q     +AL L  ++     + +     ++L +C G       K+IH   I+      
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDP 396

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + + ++++D+Y + G I  A  +FE +  +DVVS T++IS Y   GL  +A+E+F  ++ 
Sbjct: 397 V-LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G+  +YVT  S+L+A+  L+ L  GK++H  ++R        + N+L+DMY++CGS+  
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED 515

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + ++F     R +I W AM+  Y  HG G   VELF  M++E K+ PD +T+LA+L  CS
Sbjct: 516 AYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDE-KIIPDHITFLALLYACS 574

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+ + G + F EI+ C+   EP  EHY C+VD+LGR   + EA + +K+M  EPT  +
Sbjct: 575 HSGLVNEGKS-FLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEV 633

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             +LLGACR+H N +IGE   ++L+E++ +N GNYV++SN++A+ GRW+DV  VR  MK 
Sbjct: 634 WCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKG 693

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK-EAGYVPDMSCVLY 552
             +TK+PG SWIE+   +H F + D+ HP  +++  K+ Q++ K K E GYV     VL+
Sbjct: 694 SGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLH 753

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           +V EE+K ++L GHSE+LA+ +GL+ T EG PIRV KNLR+C DCH+F   VS+ + R++
Sbjct: 754 NVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFEREL 813

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD +RFHH  +G CSCGD+W
Sbjct: 814 IVRDASRFHHFKDGMCSCGDFW 835



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 239/466 (51%), Gaps = 29/466 (6%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG+   AL    EM  LG+      +  LL AC     L  G  +H   IK      V+
Sbjct: 35  SNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVF 94

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERN-VVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           +   L+  Y KC  ++ ARK+FD M  RN VVSW ++ISAYS      EAL LF  ML++
Sbjct: 95  VVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKA 154

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
               N +TFA  L +C  +   +LG QIH+ I+KS     +YV ++L+ MY + G++ EA
Sbjct: 155 GVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEA 214

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
             +F  L  +D+V+  ++++G+ Q GL  EA+E F  LQ   +  + V+  S++ A   L
Sbjct: 215 AVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRL 274

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
             L +GK++H++ ++    S +++ N+LIDMY+KC  ++Y  R FD M+ + +ISW    
Sbjct: 275 GYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAA 334

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD--- 390
            GY+++    + +EL   ++ E  +  D+    ++L  C       RGL    +I +   
Sbjct: 335 AGYAQNKCYLQALELLRQLQMEG-MDVDATMIGSILLAC-------RGLNCLGKIKEIHG 386

Query: 391 --CKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH--- 444
              + G  +P +++   ++D+ G  G +  A+   +++  E    +  + + +C VH   
Sbjct: 387 YTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESI--ECKDVVSWTSMISCYVHNGL 442

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
            N  +  F   +   +EP+    YV L ++ ++      + + +E+
Sbjct: 443 ANKALEVFSSMKETGLEPD----YVTLVSILSAVCSLSTLKKGKEI 484



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 187/375 (49%), Gaps = 38/375 (10%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y KC  + DA  +FD+M ER++ +W AM+  Y     +  AL ++  M       + +TF
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             +L +C        G +IH L IK   +S ++V +SL+ +YAK   I+ AR +F+ +  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 223 R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           R DVVS  +IIS Y+  G+  EA+ LF ++   G+++N  T+A+ L A    + +  G Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H+ +L+      V + N+L+ MY + G +  +  +F N+  + +++WN+ML G+ ++G+
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             E +E F  ++  + +KPD V+ ++++      G    G  +    +  K+GF+  I  
Sbjct: 242 YSEALEFFYDLQNAD-LKPDQVSIISIIVASGRLGYLLNGKEIHAYAI--KNGFDSNILV 298

Query: 402 YGCVVDMLGR------AGRVG-------------------------EALEFIKNMPFEPT 430
              ++DM  +       GR                           +ALE ++ +  E  
Sbjct: 299 GNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 431 ---AAILGSLLGACR 442
              A ++GS+L ACR
Sbjct: 359 DVDATMIGSILLACR 373



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY K G + +A  +F+ + ER + +  A++ GY   G    A+E++R+++  G+  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           +  +L A   +  L  G ++H   +++   S+V + NSL+ +Y+KC  +  +R++FD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 323 ERT-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            R  V+SWN+++  YS +GM  E + LF+ M +   V  ++ T+ A L  C        G
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG-VVTNTYTFAAALQACEDSSFIKLG 179

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
           + +   I+  K G   ++     +V M  R G++ EA            A I G+L G  
Sbjct: 180 MQIHAAIL--KSGRVLDVYVANALVAMYVRFGKMPEA------------AVIFGNLEGKD 225

Query: 442 RVHYNVDIGEFVGQRL 457
            V +N  +  F+   L
Sbjct: 226 IVTWNSMLTGFIQNGL 241



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   KAL     M   GLE  +    ++L+A  +  TL+ G+ +H  +I+  +     +
Sbjct: 440 NGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSI 499

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +C  + DA K+F   + RN++ WTAMISAY    +   A+ LF+RM     
Sbjct: 500 SNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKI 559

Query: 156 EPNEFTFATVLTSCA 170
            P+  TF  +L +C+
Sbjct: 560 IPDHITFLALLYACS 574


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/559 (40%), Positives = 333/559 (59%), Gaps = 33/559 (5%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF--------------- 147
           Y K   L DAR +FD M ER+ VSW  MIS Y+Q     EA  LF               
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 148 ------------IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                        R+     E N  ++  ++         +  +++   +   N  S   
Sbjct: 193 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW-- 250

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             ++++  YA+ G I +AR  F+ +P+RD +S  AII+GYAQ G  EEA+ LF +++ +G
Sbjct: 251 --NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
              N  T+ S L+  + +AAL  GKQVH  V++  + S   + N+L+ MY KCG++  + 
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 368

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VF+ + E+ V+SWN M+ GY++HG G+E + LF  M++   + PD VT + VLS CSH 
Sbjct: 369 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG-ILPDDVTMVGVLSACSHT 427

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D+G   F+ +     G     +HY C++D+LGRAGR+ +A   +KNMPFEP AA  G
Sbjct: 428 GLVDKGTEYFYSMTQ-DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWG 486

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGA R+H N ++GE   + + E+EP+N+G YV+LSNLYA++GRW DV R+R  M+++ 
Sbjct: 487 ALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRG 546

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K PG SW+E+   +HTF   D  HP R+ +   +++L +K K+ GYV     VL+DV+
Sbjct: 547 VKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVE 606

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+K  +L  HSEKLA+ FG++  P G PIRVIKNLR+C DCHN  K +SK+ GR + LR
Sbjct: 607 EEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILR 666

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH   G CSCGDYW
Sbjct: 667 DSHRFHHFNGGQCSCGDYW 685



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 5/263 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   ++ AR  FD M +R+ +SW A+I+ Y+Q  +  EAL+LF+ M R     N
Sbjct: 253 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLN 312

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             TF + L++CA     ELGKQ+H  ++K+  ES  YVG++LL MY K G I +A  VFE
Sbjct: 313 RSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE 372

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + E++VVS   +I+GYA+ G  +EA+ LF  ++  G++ + VT   VL+A S    +  
Sbjct: 373 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 432

Query: 279 GKQ-VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGY 336
           G +  +S    + I +       +ID+  + G L  ++ +  NM  E    +W A+L   
Sbjct: 433 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 492

Query: 337 SKHG---MGREVVELFNLMREEN 356
             HG   +G +  ++   M  +N
Sbjct: 493 RIHGNTELGEKAAKMIFEMEPDN 515



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 188/451 (41%), Gaps = 75/451 (16%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR +FD+M ER+VVSW AM+S Y+Q  +  EA  +F  M       N  ++  +L +
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLAA 101

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  E  +++     +S  +  +   + ++  Y K  R+ +ARG+F+ +PERD VS 
Sbjct: 102 YVQNGRIEDARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW 157

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVE------GMISNYVTYASVLTALSGLAALGHGKQV 282
             +ISGYAQ G   EA  LF +  V        M+S YV    +  A      +     V
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 217

Query: 283 HSHVLRFEIPSYVVLQ--------------------NSLIDMYSKCGSLTYSRRVFDNMS 322
             + +   I  YV  +                    N++I  Y++ G +  +R  FD M 
Sbjct: 218 SWNAI---IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP 274

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +R  ISW A++ GY++ G G E + LF  M+ + + + +  T+ + LS C+     + G 
Sbjct: 275 QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGK 333

Query: 383 AVFHEIVD-----------------CKDGF------------EPEIEHYGCVVDMLGRAG 413
            V   +V                  CK G             E E+  +  ++    R G
Sbjct: 334 QVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG 393

Query: 414 RVGEAL---EFIKNMPFEPTAAILGSLLGACRVHYNVDIG-EFVGQRLMEIE-PENAGNY 468
              EAL   E +K     P    +  +L AC     VD G E+      +     N+ +Y
Sbjct: 394 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHY 453

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
             + +L   AGR +D    + LMK      D
Sbjct: 454 TCMIDLLGRAGRLDD---AQNLMKNMPFEPD 481



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 11/234 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   G  +    + + L+ C     L  G++VH  ++K       Y+   L+V Y K
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 360

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  + DA  +F+ + E+ VVSW  MI+ Y++     EAL LF  M ++   P++ T   V
Sbjct: 361 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 420

Query: 166 LTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L++C+     + G +  +S+       ++    + ++D+  +AGR+ +A+ + + +P E 
Sbjct: 421 LSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 480

Query: 224 DVVSCTAI-----ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           D  +  A+     I G  +LG  E+A ++  +++ +   S      S L A SG
Sbjct: 481 DAATWGALLGASRIHGNTELG--EKAAKMIFEMEPDN--SGMYVLLSNLYAASG 530



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           +L  +R +FD M ER V+SWNAML GY+++G  +E  E+F+ M  +N     S+++  +L
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN-----SISWNGML 99

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           +     G  +    +F    D       E+  + C++    +  R+ +A      MP   
Sbjct: 100 AAYVQNGRIEDARRLFESKADW------ELISWNCMMGGYVKRNRLVDARGIFDRMPERD 153

Query: 430 TAAILGSLLGACRVHYNVDIGEFV-GQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRV 487
             +    + G  +       GE +  QRL E  P  +   +  + + Y   G  ++  RV
Sbjct: 154 EVSWNTMISGYAQN------GELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207

Query: 488 RELMKEK 494
            + M EK
Sbjct: 208 FDGMPEK 214


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/632 (36%), Positives = 361/632 (57%), Gaps = 77/632 (12%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCE---------CLSDARKMFDEMRERNVVSWT 128
           Q++H  ++K+       +   LI  Y KC           +++ARK+FDEM  R+ +SWT
Sbjct: 168 QQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWT 227

Query: 129 -------------------------------AMISAYSQKAHSFEALNLFIRMLRSDTEP 157
                                          AMIS Y+ +    EA  +F +M+ S  + 
Sbjct: 228 TIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL 287

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEA 213
           +EFTF +V++ CA A  F LGK++H+  +K+      +  + V ++L+  Y K G++  A
Sbjct: 288 DEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIA 347

Query: 214 RGVFECLPERDVVSCTAIISGY-------------------------------AQLGLDE 242
           + +F  +PERD+VS   I+SGY                               AQ+G  E
Sbjct: 348 QEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAE 407

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++ F +++++G       +A  + + S L +L HG+Q+H+ V+R+   S +   N+LI
Sbjct: 408 EALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALI 467

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY++CG +  +  +F NM     ISWNAM+    +HG G + +ELF  M +E  + PD 
Sbjct: 468 TMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEG-ILPDR 526

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +++L V+S CSH G+   G   F  + +   G  P+ EHY  ++D+L RAG+  EA E +
Sbjct: 527 ISFLTVISACSHAGLVKEGRKYFDSMHNVY-GVNPDEEHYARIIDLLCRAGKFSEAKEVM 585

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++MPFEP A I  +LL  CR+H N+D+G    +RL E++P++ G YV+LSN+YA AG+W 
Sbjct: 586 ESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWN 645

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           D+ +VR+LM+++ V K+PG SWIE++  +H+F   D +HP   ++   ++QL ++ ++ G
Sbjct: 646 DMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIG 705

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD  CVL+DV+ + KE  L  HSEKLA+ +G +  P GA +RV KNLRIC DCHN  K
Sbjct: 706 YVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFK 765

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SKV GR++ +RD  RFHH  +G CSCGDYW
Sbjct: 766 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 186/417 (44%), Gaps = 87/417 (20%)

Query: 61  YDTLLNACVNQRTLRG--GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           Y +LL  C  Q  +     + VHAHMI + ++P  ++  RLI  Y+K   L+ AR +FDE
Sbjct: 14  YGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDE 73

Query: 119 MRERNVVS---------------------------------WTAMISAYSQKAHSFEALN 145
           + + ++V+                                 + AMI+AYS       A+ 
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIE 133

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMY 204
           LF  M R +  P+ +TF +VL + A     E   +Q+H  ++KS       V ++L+  Y
Sbjct: 134 LFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSY 193

Query: 205 AKAGR---------IHEARGVFECLPERDVVSCT-------------------------- 229
            K            + EAR +F+ +P RD +S T                          
Sbjct: 194 VKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKL 253

Query: 230 -----AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
                A+ISGYA  GL  EA E+FRK+ +  +  +  T+ SV++  +       GK++H+
Sbjct: 254 GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA 313

Query: 285 HVLRF---EIPSYVV-LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           + L+      P   + + N+LI  Y KCG +  ++ +F+ M ER ++SWN +L GY    
Sbjct: 314 YFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVR 373

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
              E    FN M E+N      ++++ ++SG +  G  +  L  F+ +     GFEP
Sbjct: 374 CMDEAKSFFNEMPEKN-----ILSWIIMISGLAQIGFAEEALKFFNRMK--LQGFEP 423



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 41/332 (12%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRP----PVYLRTRLIVFYNKC---------- 106
           + ++++ C N    R G+ +HA+ +KT   P     + +   LI FY KC          
Sbjct: 292 FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIF 351

Query: 107 ---------------------ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
                                 C+ +A+  F+EM E+N++SW  MIS  +Q   + EAL 
Sbjct: 352 NKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALK 411

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            F RM     EP ++ FA  + SC+     + G+Q+H+ +++  +ES +  G++L+ MYA
Sbjct: 412 FFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYA 471

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G +  A  +F  +P  D +S  A+I+   Q G   +AIELF ++  EG++ + +++ +
Sbjct: 472 RCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLT 531

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           V++A S    +  G++    +   + +         +ID+  + G  + ++ V ++M  E
Sbjct: 532 VISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFE 591

Query: 324 RTVISWNAMLVGYSKHG---MGREVVE-LFNL 351
                W A+L G   HG   +G E  E LF L
Sbjct: 592 PGAPIWEALLAGCRIHGNIDLGIEAAERLFEL 623


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 353/573 (61%), Gaps = 4/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+A  +   L  G+ VHA+ +K      + +   L+  Y KC  +  + ++FD MR +
Sbjct: 370 SLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK 429

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VSWT +I+ Y+Q +   EA+  F    +   + +     ++L +C+G     L KQ+H
Sbjct: 430 DHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVH 489

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S  I++     I + + ++D+Y + G +  A  +FE L ++D+V+ T++++ +A+ GL  
Sbjct: 490 SYAIRNGLLDLI-LKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLH 548

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LF K+   G+  + V    +L A++GL++L  GK++H  ++R + P    + +SL+
Sbjct: 549 EAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLV 608

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYS CGS+ Y+ +VFD    + V+ W AM+     HG G++ + +F  M E   V PD 
Sbjct: 609 DMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETG-VSPDH 667

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V++LA+L  CSH  + D G   + +++  K   +P  EHY CVVD+LGR+G+  EA +FI
Sbjct: 668 VSFLALLYACSHSKLVDEG-KFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFI 726

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           K+MP EP + +  +LLGACR+H N ++      +L+E+EP+N GNYV++SN++A  G+W 
Sbjct: 727 KSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWN 786

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V  +R  M E+ + KDP  SWIE+   +HTF A D SH   + +  K+ +++ K +  G
Sbjct: 787 NVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREG 846

Query: 543 -YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
            YV D S VL+DV EE+K  +L  HSE+LA++FGLI T  G P+R+ KNLR+C DCH F 
Sbjct: 847 QYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFT 906

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K VSK++ R++ +RD NRFHH   GTCSCGD+W
Sbjct: 907 KLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 16/365 (4%)

Query: 26  FPPNPQ--NLKTLCSNGQLTKALIEMATLGLEMR----FEEYDTLLNACVNQRTLRGGQR 79
            PP     +L+ LC +G L +AL ++A      R     + Y  +L+    +R +  G++
Sbjct: 17  LPPASAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQ 76

Query: 80  VHAHMIKTCY---RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           +HAH + T         +L T+L+  Y KC  L DA ++FD M  R V SW A+I A   
Sbjct: 77  LHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLS 136

Query: 137 KAHSFEALNLFIRMLRSD----TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
              + EA+ ++  M  S+      P+  T A+VL +C        G ++H L +KS  + 
Sbjct: 137 SGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDR 196

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKL 251
              V ++L+ MYAK G +  A  VFE + + RDV S  + ISG  Q G+  EA++LFR++
Sbjct: 197 STLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRM 256

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           Q +G   N  T   VL   + LA L HG+++H+ +L+     + +  N+L+ MY++CG +
Sbjct: 257 QSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGT-EFNIQCNALLVMYARCGWV 315

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + RVF  + ++  ISWN+ML  Y ++ +  E ++ F  M  +N   PD    +++LS 
Sbjct: 316 DSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEM-VQNGFNPDHACIVSLLSA 374

Query: 372 CSHGG 376
             H G
Sbjct: 375 VGHLG 379



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 221/443 (49%), Gaps = 14/443 (3%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL     M + G  M       +L  C     L  G+ +HA ++K      +  
Sbjct: 243 NGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC 302

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+V Y +C  +  A ++F E+ +++ +SW +M+S Y Q     EA++ F  M+++  
Sbjct: 303 NA-LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF 361

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+     ++L++         G+++H+  +K   +S + + ++L+DMY K   +  +  
Sbjct: 362 NPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSAR 421

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ +  +D VS T II+ YAQ     EAI  FR  Q EG+  + +   S+L A SGL +
Sbjct: 422 VFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKS 481

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +   KQVHS+ +R  +   ++L+N +ID+Y +CG + Y+  +F+ + ++ +++W +M+  
Sbjct: 482 ISLLKQVHSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNC 540

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           ++++G+  E V LF  M     ++PDSV  + +L   +      +G  +   ++  K  F
Sbjct: 541 FAENGLLHEAVALFGKMLNAG-IQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK--F 597

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
             E      +VDM    G +  AL+       +    +  +++ A  +H +     ++ +
Sbjct: 598 PVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDV-VLWTAMINATGMHGHGKQAIYIFK 656

Query: 456 RLME--IEPENAGNYVILSNLYA 476
           R++E  + P++      L+ LYA
Sbjct: 657 RMLETGVSPDHVS---FLALLYA 676


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 322/526 (61%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  ARK+FDEM ERNV +W AM++  +      E+L  F+ M R    P+EF   +V   
Sbjct: 123 LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRC 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + E   V   LP   +VSC
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             II+G  Q G  E A+E F  ++  G+ ++ VT+ S +++ S LAAL  G+Q+H  V++
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V +   L+ MYS+CG L  S RVF           +AM+  Y  HG G++ +EL
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M      +P  VT+LA+L  CSH G+++ G+  F E++    G +P ++HY CVVD+
Sbjct: 363 FKQMMN-GGAEPSDVTFLALLYACSHSGLKEEGMDCF-ELMTKTYGMQPSVKHYTCVVDL 420

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I +MP  P   I  +LL AC+   N D+ E + +R++E++P ++ +Y
Sbjct: 421 LGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASY 480

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+ A++ RW DV+ VR+ M++  V K+PG SW+EL   +H F   D SHP ++E+ 
Sbjct: 481 VLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEID 540

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++++  K ++ GY PDMS VL+D+++E+KE  L  HSEKLA+ F  +  PEG PIRV+
Sbjct: 541 ECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVM 600

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S+V GR++ +RD +RFHH  +G CSC DYW
Sbjct: 601 KNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 34/271 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS----------- 227
           +Q+H+    S   +  +  + L+  YA  G +  AR +FE +P R+V+S           
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 228 --------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+++G   LG DEE++  F  ++ EGM  +     SV 
Sbjct: 121 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 180

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              +GL  +  G+QVH++V+R  +   + + +SL  MY +CG L     V   +   +++
Sbjct: 181 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 240

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           S N ++ G +++G     +E F +MR    V  D VT+++ +S CS      +G  +  +
Sbjct: 241 SCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISSCSDLAALAQGQQIHGQ 299

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           ++  K G +  +    C+V M  R G +G++
Sbjct: 300 VM--KAGVDKVVPVMTCLVHMYSRCGCLGDS 328



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++   C   R +  G++VHA+++++     + + + L   Y +C CL +   +   +   
Sbjct: 178 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 237

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VS   +I+  +Q   S  AL  F  M       +  TF + ++SC+       G+QIH
Sbjct: 238 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 297

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++K+  +  + V + L+ MY++ G + ++  VF      D    +A+IS Y   G  +
Sbjct: 298 GQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 357

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALS 271
           +AIELF+++   G   + VT+ ++L A S
Sbjct: 358 KAIELFKQMMNGGAEPSDVTFLALLYACS 386



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G+      + + +++C +   L  GQ++H  ++K      V + T L+  Y++C C
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++F      +    +AMISAY    H  +A+ LF +M+    EP++ TF  +L +
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   E G     L+ K+   +  +   + ++D+  ++G + EA  +   +P
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP 438



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 11/174 (6%)

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G  ++  T   ++ A + L  L   +++   + R  + S+    N L   Y K G L  +
Sbjct: 71  GAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSW----NILFGGYIKNGDLGGA 126

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R++FD M ER V +WNAM+ G +  G   E +  F  MR E  + PD     +V   C+ 
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREG-MHPDEFGLGSVFRCCA- 184

Query: 375 GGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G+ D   G  V   +V  + G + ++     +  M  R G + E    ++ +P
Sbjct: 185 -GLRDVVTGRQVHAYVV--RSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/541 (42%), Positives = 342/541 (63%), Gaps = 15/541 (2%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y +   L +AR +FDEM +RNVV+WTAM+S Y++      A  LF  M     E
Sbjct: 183 TNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM----PE 238

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIH--SLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            NE ++  +L       G+    ++   S +  +     + V + ++  +   G + +AR
Sbjct: 239 RNEVSWTAML------LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKAR 292

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ + ERD  + +A+I  Y + G + EA+ LFR++Q EG+  N+ +  SVL+    LA
Sbjct: 293 RVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLA 352

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L HGKQVH+ ++R E    + + + LI MY KCG+L  +++VF+    + V+ WN+M+ 
Sbjct: 353 SLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMIT 412

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GYS+HG+G E + +F+ M     V PD VT++ VLS CS+ G    GL +F E + CK  
Sbjct: 413 GYSQHGLGEEALNVFHDMCSSG-VPPDDVTFIGVLSACSYSGKVKEGLELF-ETMKCKYQ 470

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP IEHY C+VD+LGRA +V EA++ ++ MP EP A + G+LLGACR H  +D+ E   
Sbjct: 471 VEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAV 530

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           ++L ++EP+NAG YV+LSN+YA  GRW DV  +RE +K ++VTK PG SWIE+++ +H F
Sbjct: 531 EKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMF 590

Query: 515 HASD-RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              D + HP +  +   +++L    +EAGY PD S VL+DVDEE+K   L  HSEKLA+ 
Sbjct: 591 TGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVA 650

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           +GL+  PEG PIRV+KNLR+C DCH+  K ++KV GR++ LRD NRFHH  +G CSC DY
Sbjct: 651 YGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDY 710

Query: 634 W 634
           W
Sbjct: 711 W 711



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 2/250 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           PV +   +I+ +     +  AR++F  M+ER+  +W+AMI  Y +K +  EAL LF RM 
Sbjct: 271 PVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ 330

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R     N  +  +VL+ C      + GKQ+H+ +++S F+  +YV S L+ MY K G + 
Sbjct: 331 REGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLV 390

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            A+ VF   P +DVV   ++I+GY+Q GL EEA+ +F  +   G+  + VT+  VL+A S
Sbjct: 391 RAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS 450

Query: 272 GLAALGHGKQVHSHV-LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISW 329
               +  G ++   +  ++++   +     L+D+  +   +  + ++ + M  E   I W
Sbjct: 451 YSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVW 510

Query: 330 NAMLVGYSKH 339
            A+L     H
Sbjct: 511 GALLGACRTH 520



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 161/331 (48%), Gaps = 21/331 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  + K   LS+AR++FD M +RNVVSWT+M+  Y +     EA  LF  M       N
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM----PHKN 147

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L         +  +++  ++     E  +   ++++  Y + GR+ EAR +F+
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMMP----EKDVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+R+VV+ TA++SGYA+ G  + A +LF  +       N V++ ++L     L     
Sbjct: 204 EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAML-----LGYTHS 254

Query: 279 GKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           G+   +  L   +P   VV+ N +I  +   G +  +RRVF  M ER   +W+AM+  Y 
Sbjct: 255 GRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYE 314

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           + G   E + LF  M+ E  +  +  + ++VLS C      D G  V  ++V  +  F+ 
Sbjct: 315 RKGYELEALGLFRRMQREG-LALNFPSLISVLSVCVSLASLDHGKQVHAQLV--RSEFDQ 371

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           ++     ++ M  + G +  A +     P +
Sbjct: 372 DLYVASVLITMYVKCGNLVRAKQVFNRFPLK 402



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 131/280 (46%), Gaps = 56/280 (20%)

Query: 100 IVFYNKCECLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
           I  Y +   L  ARK+FDE  +  R V SW AM++AY +     EAL LF +M + +T  
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNT-- 86

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
                     S  G                            L+  + K G + EAR VF
Sbjct: 87  ---------VSWNG----------------------------LISGHIKNGMLSEARRVF 109

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +P+R+VVS T+++ GY + G   EA  LF  +  +    N V++  +L  L     L 
Sbjct: 110 DTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHK----NVVSWTVMLGGL-----LQ 160

Query: 278 HGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
            G+   +  L   +P   VV   ++I  Y + G L  +R +FD M +R V++W AM+ GY
Sbjct: 161 EGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGY 220

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +++G      +LF +M E N+     V++ A+L G +H G
Sbjct: 221 ARNGKVDVARKLFEVMPERNE-----VSWTAMLLGYTHSG 255



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 121/300 (40%), Gaps = 64/300 (21%)

Query: 204 YAKAGRIHEARGVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           YA+ G++  AR VF+   LP R V S  A+++ Y +     EA+ LF K+     +S   
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS--- 88

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
                                                N LI  + K G L+ +RRVFD M
Sbjct: 89  ------------------------------------WNGLISGHIKNGMLSEARRVFDTM 112

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            +R V+SW +M+ GY ++G   E   LF  M  +N      V++  +L G    G  D  
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKN-----VVSWTVMLGGLLQEGRVDDA 167

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLG---RAGRVGEALEFIKNMPFEPTAAILGSLL 438
             +F  +        PE +    V +M+G     GR+ EA      MP          + 
Sbjct: 168 RKLFDMM--------PE-KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVS 218

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           G  R +  VD    V ++L E+ PE N  ++  +   Y  +GR  + + + + M  K V 
Sbjct: 219 GYAR-NGKVD----VARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVV 273


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 354/589 (60%), Gaps = 2/589 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L++M + GL        ++L AC        G+++H  MIK       Y+   L+  Y K
Sbjct: 198 LLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK 257

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L DA K+FD M  R+++ W A+IS  S      EA ++F  + +     N  T A V
Sbjct: 258 NHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAV 317

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L S A        +Q+H+L  K  F    +V + L+D Y K   + +A  VFE     D+
Sbjct: 318 LKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDI 377

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           ++ T++I+  +Q    E AI+LF ++  +G+  +    +S+L A + L+A   GKQVH+H
Sbjct: 378 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 437

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           +++ +  S     N+L+  Y+KCGS+  +   F ++ ER V+SW+AM+ G ++HG G+  
Sbjct: 438 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 497

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +ELF  M +E  + P+ +T  +VL  C+H G+ D     F+ + +   G +   EHY C+
Sbjct: 498 LELFGRMVDEG-INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF-GIDRTEEHYSCM 555

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+LGRAG++ +A+E + +MPF+  A++ G+LLGA RVH + ++G+   ++L  +EPE +
Sbjct: 556 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 615

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G +V+L+N YAS+G W +V +VR+LMK+  + K+P  SW+E+   +HTF   D+SHPM +
Sbjct: 616 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTK 675

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+ +K+ +L     +AGY+P++   L+D+D  +KE +L  HSE+LA+ F L+ TP GAPI
Sbjct: 676 EIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPI 735

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV KNLRIC DCH   KF+S +  R++ +RD NRFHH  +GTCSCGDYW
Sbjct: 736 RVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 170/303 (56%), Gaps = 4/303 (1%)

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVS 126
           CV    L  G +VHA  + T +   V++   L+  Y     + DAR++FDE   ERN VS
Sbjct: 19  CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVS 76

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W  ++SAY +     +A+ +F  M+ S  +P EF F+ V+ +C G+   + G+Q+H++++
Sbjct: 77  WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 136

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +  +E  ++  ++L+DMY K GR+  A  +FE +P+ DVVS  A+ISG    G D  AIE
Sbjct: 137 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 196

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           L  +++  G++ N    +S+L A +G  A   G+Q+H  +++    S   +   L+DMY+
Sbjct: 197 LLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYA 256

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           K   L  + +VFD MS R +I WNA++ G S  G   E   +F  +R+E  +  +  T  
Sbjct: 257 KNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG-LGVNRTTLA 315

Query: 367 AVL 369
           AVL
Sbjct: 316 AVL 318



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 182/336 (54%), Gaps = 5/336 (1%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G   +   EM   G++     +  ++NAC   R +  G++VHA +++  Y   V+    L
Sbjct: 91  GDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANAL 150

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y K   +  A  +F++M + +VVSW A+IS      H   A+ L ++M  S   PN 
Sbjct: 151 VDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNV 210

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           F  +++L +CAGA  F+LG+QIH  +IK+N +S  Y+G  L+DMYAK   + +A  VF+ 
Sbjct: 211 FMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW 270

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +  RD++   A+ISG +  G  +EA  +F  L+ EG+  N  T A+VL + + L A    
Sbjct: 271 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASAT 330

Query: 280 KQVH--SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           +QVH  +  + F   ++VV  N LID Y KC  L+ + RVF+  S   +I+  +M+   S
Sbjct: 331 RQVHALAEKIGFIFDAHVV--NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALS 388

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +   G   ++LF  M  +  ++PD     ++L+ C+
Sbjct: 389 QCDHGEGAIKLFMEMLRKG-LEPDPFVLSSLLNACA 423



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           NEF    VL     A   +LG Q+H++ + + F S ++V ++L+ MY   G + +AR VF
Sbjct: 9   NEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 218 -ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
            E   ER+ VS   ++S Y +     +AI++F ++   G+      ++ V+ A +G   +
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+QVH+ V+R      V   N+L+DMY K G +  +  +F+ M +  V+SWNA++ G 
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             +G     +EL   M+    V P+     ++L  C+  G  D G
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLV-PNVFMLSSILKACAGAGAFDLG 229


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/582 (40%), Positives = 362/582 (62%), Gaps = 13/582 (2%)

Query: 61  YDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE------CLSDAR 113
           Y + L +C+ + T L+  +++ A  IKT  +  + + T+LI   N C        +  A 
Sbjct: 25  YPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLI---NSCTQNPTTASMDYAH 81

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F+ + + ++V + +M   YS+     +A++LFI+ L  +  P+++TF ++L +C  A 
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
            F+ GKQ+H L IK     + YV  +L++MYA    +  A+ VF+ + E  VVS  AII+
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GYA+     EA+ LFR+LQ   +  N VT  SVL++ + L AL  GK +H +V +  +  
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDK 261

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
           YV +  +LIDMY+KCGSL  +  VF++MS R   +W+AM+V Y+ HG G++V+ +F  M 
Sbjct: 262 YVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMA 321

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
              KV+PD +T+L +L  CSH G+ D G   F+ + +   G  P I+HYGC+VD+LGRAG
Sbjct: 322 RA-KVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVY-GIIPGIKHYGCMVDLLGRAG 379

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
            + EA +FI  +P +PT  +  +LL +C  H N+++ + V  +++E++  + G+YVILSN
Sbjct: 380 LLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSN 439

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQ 533
           L A AG+WEDV  +R+LM  K   K PG S IE+D ++H F + D  H +   L   + +
Sbjct: 440 LCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDE 499

Query: 534 LSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           L  + K  GYVPD S V++ D+++E+KE  L  HSEKLA++FGL+ TP G  IRV+KNLR
Sbjct: 500 LVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLR 559

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +C DCH+ AK +S +  R++ LRD  RFHH  +G CSCGDYW
Sbjct: 560 VCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 346/576 (60%), Gaps = 9/576 (1%)

Query: 63   TLLNACVNQRTLRGG----QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
            ++L AC    +L GG     ++HA  +K       ++ T LI  Y+K   + +A  +F  
Sbjct: 1041 SVLRAC---SSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVN 1097

Query: 119  MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
                ++ SW A++  Y       +AL L+I M  S    ++ T      +  G  G + G
Sbjct: 1098 QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQG 1157

Query: 179  KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            KQIH++++K  F   ++V S +LDMY K G +  AR VF  +P  D V+ T +ISG  + 
Sbjct: 1158 KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVEN 1217

Query: 239  GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            G +E A+  + ++++  +  +  T+A+++ A S L AL  G+Q+H+++++        + 
Sbjct: 1218 GQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVM 1277

Query: 299  NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
             SL+DMY+KCG++  +R +F   + R + SWNAM+VG ++HG  +E ++ F  M+    V
Sbjct: 1278 TSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRG-V 1336

Query: 359  KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             PD VT++ VLS CSH G+       F+ +     G EPEIEHY C+VD L RAGR+ EA
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQK-NYGIEPEIEHYSCLVDALSRAGRIEEA 1395

Query: 419  LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
             + I +MPFE +A++  +LL ACRV  + + G+ V ++L+ +EP ++  YV+LSN+YA+A
Sbjct: 1396 EKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAA 1455

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
             +WE+V   R +M++  V KDPG SW++L   +H F A DRSH   + +  KV+ +  + 
Sbjct: 1456 NQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1515

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            +E GYVPD    L DV+EE KE  L  HSEKLA+ +GL+ TP    +RVIKNLR+C DCH
Sbjct: 1516 REEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1575

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +  K++SKV+ R++ LRD NRFHH   G CSCGDYW
Sbjct: 1576 SAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 4/361 (1%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            +L        L  G+++H  ++++     V +   LI  Y K   +S AR +F +M E +
Sbjct: 941  MLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVD 1000

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGKQIH 182
            ++SW  MIS  +       ++ +F+ +LR    P++FT A+VL +C+    G+ L  QIH
Sbjct: 1001 LISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIH 1060

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            +  +K+      +V ++L+D+Y+K G++ EA  +F      D+ S  AI+ GY   G   
Sbjct: 1061 ACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFP 1120

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            +A+ L+  +Q  G  S+ +T  +   A  GL  L  GKQ+H+ V++      + + + ++
Sbjct: 1121 KALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVL 1180

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMY KCG +  +RRVF  +     ++W  M+ G  ++G     +  ++ MR  +KV+PD 
Sbjct: 1181 DMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMR-LSKVQPDE 1239

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
             T+  ++  CS     ++G  +   IV     F+P +     +VDM  + G + +A    
Sbjct: 1240 YTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLF 1297

Query: 423  K 423
            K
Sbjct: 1298 K 1298



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 171/331 (51%), Gaps = 12/331 (3%)

Query: 115  MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
            M+D+    +V+ W   +S + Q+  ++EA++ F+ M+ S    +  TF  +LT  AG   
Sbjct: 892  MYDD-DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNC 950

Query: 175  FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             ELGKQIH ++++S  +  + VG+ L++MY KAG +  AR VF  + E D++S   +ISG
Sbjct: 951  LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG 1010

Query: 235  YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH--GKQVHSHVLRFEIP 292
                GL+E ++ +F  L  + ++ +  T ASVL A S L   G+    Q+H+  ++  + 
Sbjct: 1011 CTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEG-GYYLATQIHACAMKAGVV 1069

Query: 293  SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
                +  +LID+YSK G +  +  +F N     + SWNA++ GY   G   + + L+ LM
Sbjct: 1070 LDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILM 1129

Query: 353  REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI--VDCKDGFEPEIEHYGCVVDMLG 410
            +E  + + D +T   V +  + GG+   GL    +I  V  K GF  ++     V+DM  
Sbjct: 1130 QESGE-RSDQITL--VNAAKAAGGL--VGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYL 1184

Query: 411  RAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
            + G +  A      +P  P      +++  C
Sbjct: 1185 KCGEMESARRVFSEIP-SPDDVAWTTMISGC 1214



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 162/366 (44%), Gaps = 33/366 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE- 121
           ++L   +    L  G+R HA ++ + + P  ++   LI  Y KC  LS ARK+FD   + 
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 122 -RNVVSWTAMISAYSQKA-HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            R++V+W A++SA +  A  S +  +LF  + RS       T A V   C  +      +
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H   +K   +  ++V  +L+++YAK G I EAR +F+ +  RDVV    ++  Y    
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           L+ EA+ LF +    G   + VT          L  L    +   ++L  E+  +     
Sbjct: 841 LEYEAMLLFSEFHRTGFRPDDVT----------LRTLSRVVKCKKNIL--ELKQFKAYAT 888

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L  MY   GS               VI WN  L  + + G   E V+ F  M   ++V 
Sbjct: 889 KLF-MYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMI-NSRVA 932

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D +T++ +L+  +     + G  + H IV  + G +  +    C+++M  +AG V  A 
Sbjct: 933 CDGLTFVVMLTVVAGLNCLELGKQI-HGIV-MRSGLDQVVSVGNCLINMYVKAGSVSRAR 990

Query: 420 EFIKNM 425
                M
Sbjct: 991 SVFGQM 996



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 28   PNPQNL--KTLCS----NGQLTKALIEMATLGL-EMRFEEYD--TLLNACVNQRTLRGGQ 78
            P+P ++   T+ S    NGQ   AL     + L +++ +EY   TL+ AC     L  G+
Sbjct: 1200 PSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGR 1259

Query: 79   RVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
            ++HA+++K  C   P ++ T L+  Y KC  + DAR +F     R + SW AMI   +Q 
Sbjct: 1260 QIHANIVKLNCAFDP-FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQH 1318

Query: 138  AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHIYV 196
             ++ EAL  F  M      P+  TF  VL++C+      E  +  +S+      E  I  
Sbjct: 1319 GNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEH 1378

Query: 197  GSSLLDMYAKAGRIHEARGVFECLP 221
             S L+D  ++AGRI EA  V   +P
Sbjct: 1379 YSCLVDALSRAGRIEEAEKVISSMP 1403


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/493 (43%), Positives = 322/493 (65%), Gaps = 2/493 (0%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +AL LF  + +S  + ++ T AT   +C      + GKQIH+  IK+ F+S ++V S +L
Sbjct: 13  KALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGIL 72

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           DMY K G +  A  VF  +   D V+ T++ISG    G +++A+ ++ +++   ++ +  
Sbjct: 73  DMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 132

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T+A+++ A S + AL  G+Q+H++V++ +  S   +  SL+DMY+KCG++  + R+F  M
Sbjct: 133 TFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 192

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           + R +  WNAMLVG ++HG   E V LF  M+    ++PD V+++ +LS CSH G+    
Sbjct: 193 NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG-IEPDRVSFIGILSACSHAGLTSEA 251

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
               H + +   G EPEIEHY C+VD LGRAG V EA + I+ MPF+ +A+I  +LLGAC
Sbjct: 252 YEYLHSMPN-DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGAC 310

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
           R+  +V+ G+ V  RL  +EP ++  YV+LSN+YA+A RW+DVT  R++MK K V KDPG
Sbjct: 311 RIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPG 370

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            SWI++  +LH F   DRSHP  + +  KV+++    +E GYVPD   VL DV++E+KE+
Sbjct: 371 FSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKER 430

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
            L  HSEKLA+ +GLI TP    IRVIKNLR+C DCHN  K++SKV+ R++ LRD NRFH
Sbjct: 431 SLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFH 490

Query: 622 HIVEGTCSCGDYW 634
           H  +G CSCGDYW
Sbjct: 491 HFRDGVCSCGDYW 503



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 152/275 (55%), Gaps = 3/275 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T   AC     L  G+++HAH IK  +   +++ + ++  Y KC  + +A  +F+ +   
Sbjct: 35  TAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP 94

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+WT+MIS      +  +AL ++ RM +S   P+E+TFAT++ + +     E G+Q+H
Sbjct: 95  DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 154

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +IK +  S  +VG+SL+DMYAK G I +A  +F+ +  R++    A++ G AQ G  E
Sbjct: 155 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 214

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           EA+ LF+ ++  G+  + V++  +L+A S  GL +  + + +HS    + I   +   + 
Sbjct: 215 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAY-EYLHSMPNDYGIEPEIEHYSC 273

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L+D   + G +  + +V + M  +   S N  L+G
Sbjct: 274 LVDALGRAGLVQEADKVIETMPFKASASINRALLG 308



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 3/185 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + TL+ A      L  G+++HA++IK  C   P ++ T L+  Y KC  + DA ++F +M
Sbjct: 134 FATLIKASSCVTALEQGRQLHANVIKLDCVSDP-FVGTSLVDMYAKCGNIEDAYRLFKKM 192

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA-FGFELG 178
             RN+  W AM+   +Q  ++ EA+NLF  M     EP+  +F  +L++C+ A    E  
Sbjct: 193 NVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAY 252

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + +HS+      E  I   S L+D   +AG + EA  V E +P +   S    + G  ++
Sbjct: 253 EYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 312

Query: 239 GLDEE 243
             D E
Sbjct: 313 QGDVE 317



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           ++A+ELF  +   G  S+ +T A+   A   L  L  GKQ+H+H ++    S + + + +
Sbjct: 12  KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY KCG +  +  VF+ +S    ++W +M+ G   +G   + + +++ MR +++V PD
Sbjct: 72  LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR-QSRVMPD 130

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             T+  ++   S     ++G  +   ++      +P +     +VDM  + G + +A   
Sbjct: 131 EYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRL 188

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVD--IGEFVGQRLMEIEPENAGNYVILS 472
            K M     A     L+G  + H N +  +  F   +   IEP+      ILS
Sbjct: 189 FKKMNVRNIALWNAMLVGLAQ-HGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/657 (36%), Positives = 360/657 (54%), Gaps = 68/657 (10%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  ++M + G          +L++C        G++VH  ++K      V +   ++  Y
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMY 392

Query: 104 NKCECLSDAR-------------------------------KMFDEMRERNVVSWTAMIS 132
            KC     AR                                MF+ M ER++VSW  +I+
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIA 452

Query: 133 AYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            Y+Q      AL  F RML  S  EP+ FT  +VL++CA     ++GKQ+HS I+++   
Sbjct: 453 GYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 512

Query: 192 SHIYVGSSLLDMYAKAGRIH---------------------------------EARGVFE 218
               + ++L+  YAK+G +                                  +AR +F+
Sbjct: 513 CSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFD 572

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +  RDV++ TA+I GY Q G ++EA+ELFR + + G   N  T A+VL+A + LA L +
Sbjct: 573 IMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDY 632

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYS 337
           GKQ+H   +R      V + N++I +Y++ GS+  +RRVFD +  R   I+W +M+V  +
Sbjct: 633 GKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMA 692

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +HG+G + V LF  M     VKPD +TY+ VLS C+H G  D+G   ++E +  + G  P
Sbjct: 693 QHGLGEQAVVLFEEMVRVG-VKPDHITYVGVLSACAHAGFVDKG-KRYYEQMQNEHGIVP 750

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           ++ HY C+VD+  RAG + EA EFI+ MP  P   + GSLL ACRV  N D+ E    +L
Sbjct: 751 QMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKL 810

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           + I+P N+G Y  L+N+Y++ GRW D  R+ +L K+K V K+ G SW  +   +H F A 
Sbjct: 811 LSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGAD 870

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D  HP R+ +  K  ++  + K+AG+VPD++ VL+DVD+E KE++L  HSEKLA+ FGLI
Sbjct: 871 DVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLI 930

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TPE   +R++KNLR+C DCH   KF+SK   R++ +RD  RFHH  +G CSC DYW
Sbjct: 931 STPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 179/402 (44%), Gaps = 76/402 (18%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE----CLSDARK 114
           + Y  LL  C        G+ +HAH +K       YL   L+ +Y        C  +AR 
Sbjct: 210 DHYARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARC 269

Query: 115 MFD---------------------------------EMRERNVVSWTAMISAYSQKAHSF 141
           +FD                                 EM +R+ VSWT MI   ++    +
Sbjct: 270 LFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFW 329

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +A+  F+ M+     P++FT   VL+SCA      +G+++H  ++K    S + V +S+L
Sbjct: 330 DAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVL 389

Query: 202 DMYAKAGRIHEARGVFECLP-------------------------------ERDVVSCTA 230
            MY K G    AR VFE +                                ER +VS   
Sbjct: 390 YMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNT 449

Query: 231 IISGYAQLGLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           II+GY Q GLD  A++ F R L    M  +  T  SVL+A + L  L  GKQ+HS++LR 
Sbjct: 450 IIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT 509

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVE 347
            +P    + N+LI  Y+K GS+  +RR+ D   +++  VIS+ A+L GY K G  ++  E
Sbjct: 510 GMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQARE 569

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           +F++M        D + + A++ G    G  D  + +F  ++
Sbjct: 570 IFDIMNNR-----DVIAWTAMIVGYHQNGQNDEAMELFRSMI 606



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 25/230 (10%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG----SLTYSRRVFDNM--SERTVISWNAM 332
           G+ +H+H ++  +     L N+L+  Y+  G        +R +FD++  + R   +WN++
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           L  Y+K G   +   +F  M +      D+V++  ++ G +  G     +  F ++V   
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDR-----DAVSWTIMIVGLNRSGRFWDAVKTFLDMV--S 340

Query: 393 DGFEPEIEHYGCVVDMLG--RAGRVGEALE-FIKNMPFEPTAAILGSLL---GACRVHYN 446
           +GF P       V+       A  VG  +  F+  +       +  S+L   G C    +
Sbjct: 341 EGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCG---D 397

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            +    V +R+   +  +  ++ ++ +LY   GR E    + E M E+++
Sbjct: 398 AETARAVFERM---QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI 444


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 352/576 (61%), Gaps = 10/576 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF---DEMR 120
           +L AC    TL    ++H H+IK  ++    + T+     +  + +  A  +    ++ R
Sbjct: 13  ILQAC---NTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69

Query: 121 ERNVVSWTAMISAYSQKAHS-FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             +   ++ +I AY++ + S   A+  +  ML     PN++ F  VL +CAG     LGK
Sbjct: 70  VYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGK 129

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            +H  ++K  F+  I+V ++++ MY   +G +  AR +F+ +P+ D V+ TA+I GYA+L
Sbjct: 130 AVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARL 189

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G    A+ LFRK+Q+ G+  + VT  SVL+A + L AL  GK + S++ +  +   V L 
Sbjct: 190 GQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELS 249

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+L+DM++KCG +  +  +F NMS+RT++SW +++VG + HG G E V LF  M+    V
Sbjct: 250 NALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMV 309

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+ + ++ +LS CSH G+ +RG   F E+   + G  P+IEHYGC+VD+L RAG V EA
Sbjct: 310 -PEDIAFIGLLSACSHSGLVERGRQYFSEMTR-QFGIVPKIEHYGCMVDLLSRAGLVTEA 367

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
           LEF++ MP EP   I  +L+ ACRVH  + +GE + ++L+  EP +  NYV+LSN+Y   
Sbjct: 368 LEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKM 427

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
             WE  +++R  M +K + K PG + IELD  +H F   DRSH    E+   V ++  + 
Sbjct: 428 LDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREM 487

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K AGY P  + V  D+DEE KE  L  HSEKLA+ F L+ TP G+PIR+ KNLR+C DCH
Sbjct: 488 KRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCH 547

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + +KF+SK+Y R++ +RD++RFHH  +G CSCGD+W
Sbjct: 548 SASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 148/283 (52%), Gaps = 3/283 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE-CLSDARKMFDEM 119
           +  +L AC   R L  G+ VH  ++K  +   ++++  ++  Y  C   +  ARK+FDEM
Sbjct: 112 FPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEM 171

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            + + V+WTAMI  Y++   S  A+ LF +M  +   P++ T  +VL++C      ELGK
Sbjct: 172 PKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGK 231

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            I S I K      + + ++L+DM+AK G + +A G+F  + +R +VS T++I G A  G
Sbjct: 232 WIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHG 291

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQ 298
              EA+ LF +++  GM+   + +  +L+A S    +  G+Q  S + R F I   +   
Sbjct: 292 RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHY 351

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
             ++D+ S+ G +T +    + M  E   I W  ++     HG
Sbjct: 352 GCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHG 394



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 130/306 (42%), Gaps = 44/306 (14%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC +   L  G+ + +++ K      V L   L+  + KC  +  A  +F  M +R
Sbjct: 216 SVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKR 275

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            +VSWT++I   +      EA++LF  M  S   P +  F  +L++C+ +   E G+Q  
Sbjct: 276 TIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYF 335

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S + +                             F  +P+ +   C  ++   ++ GL  
Sbjct: 336 SEMTRQ----------------------------FGIVPKIEHYGC--MVDLLSRAGLVT 365

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI---PSYVVLQN 299
           EA+E   ++ +E    N + + ++++A      L  G+ +   ++R E     +YV+L N
Sbjct: 366 EALEFVERMPIE---PNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSN 422

Query: 300 ---SLIDMYSKCG-SLTYSRRVFDNMSERTVISWN----AMLVGYSKHGMGREVVELFNL 351
               ++D   K    +   ++    +   T+I  +      +VG   H    E++++ N 
Sbjct: 423 IYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNE 482

Query: 352 MREENK 357
           M  E K
Sbjct: 483 MGREMK 488


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/536 (40%), Positives = 338/536 (63%), Gaps = 1/536 (0%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y +   L  ARK+FDEM +R + +W AMI+   Q  ++ E L+LF  M      P+
Sbjct: 31  LINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPD 90

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E+T  +V +  AG     +G+QIH   IK   E  + V SSL  MY + G++ +   V  
Sbjct: 91  EYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIR 150

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P R++V+   +I G AQ G  E  + L++ +++ G   N +T+ +VL++ S LA  G 
Sbjct: 151 SMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ 210

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+Q+H+  ++    S V + +SLI MYSKCG L  + + F    +   + W++M+  Y  
Sbjct: 211 GQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGF 270

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G E ++LFN M E+ +++ + V +L +L  CSH G++D+GL +F  +V+ K GF+P 
Sbjct: 271 HGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVE-KYGFKPG 329

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           ++HY CVVD+LGRAG + +A   IK+MP +P   I  +LL AC +H N ++ + V + ++
Sbjct: 330 LKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEIL 389

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           EI+P ++  YV+L+N++ASA RW DV+ VR+ M++K V K+ G SW E    +H F   D
Sbjct: 390 EIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGD 449

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
           RS    +E+ + +K+L+++ K  GY PD + VL+D+DEE+KE  L+ HSEKLA+ F L+ 
Sbjct: 450 RSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMI 509

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PEGAPIR+IKNLR+C DCH   K++S +  R+++LRD +RFHH + G CSCGDYW
Sbjct: 510 LPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 34/249 (13%)

Query: 201 LDMYAKAGRIH-------------------------------EARGVFECLPERDVVSCT 229
           + MY+K G +                                 AR VF+ +P+R + +  
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A+I+G  Q   +EE + LFR++   G   +  T  SV +  +GL ++  G+Q+H + +++
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            +   +V+ +SL  MY + G L     V  +M  R +++WN +++G +++G    V+ L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
            +M+     +P+ +T++ VLS CS   +  +G  +  E +  K G    +     ++ M 
Sbjct: 181 KMMKISG-CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMY 237

Query: 410 GRAGRVGEA 418
            + G +G+A
Sbjct: 238 SKCGCLGDA 246



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 39/346 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG         ++ +     R++  GQ++H + IK      + + + L   Y +  
Sbjct: 81  EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNG 140

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L D   +   M  RN+V+W  +I   +Q       L L+  M  S   PN+ TF TVL+
Sbjct: 141 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 200

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SC+       G+QIH+  IK    S + V SSL+ MY+K G + +A   F    + D V 
Sbjct: 201 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 260

Query: 228 CTAIISGYAQLGLDEEAIELFRKL--QVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
            +++IS Y   G  +EAI+LF  +  Q E M  N V + ++L A S       G ++   
Sbjct: 261 WSSMISAYGFHGQGDEAIKLFNSMAEQTE-MEVNEVAFLNLLYACSHSGLKDKGLELFDM 319

Query: 286 VL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           ++ ++     +     ++D+  + G L  +  +  +M                       
Sbjct: 320 MVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMP---------------------- 357

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                        +KPD V +  +LS C+     +    VF EI++
Sbjct: 358 -------------IKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE 390



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 290 EIPSYVVL-----------QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           ++PS V L            N LI+ Y + G L  +R+VFD M +R + +WNAM+ G  +
Sbjct: 9   DLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQ 68

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI--VDCKDGFE 396
                E + LF  M       PD  T  +V SG +  G+  R +++  +I     K G E
Sbjct: 69  FEYNEEGLSLFREMHGLG-FSPDEYTLGSVFSGSA--GL--RSVSIGQQIHGYAIKYGLE 123

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA----ILGSLLGAC 441
            ++     +  M  R G++ +    I++MP     A    I+G+    C
Sbjct: 124 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 172


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/651 (37%), Positives = 373/651 (57%), Gaps = 43/651 (6%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLR 75
           F+ Q L   S  P P+N  +L          + +   G  +    +  LL A      L 
Sbjct: 82  FSNQLLRQFSRGPTPENTLSL---------YLHLRRNGFPLDRFSFPPLLKAVSKLSALN 132

Query: 76  GGQRVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
            G  +H    K   +    ++++ LI  Y  C  + DAR +FD+M  R+VV+W  MI  Y
Sbjct: 133 LGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGY 192

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           SQ AH    L L+  M  S TEP+     TVL++CA A     GK IH  I  + F    
Sbjct: 193 SQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS 252

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE------------ 242
           ++ +SL++MYA  G +H AR V++ LP + +V  TA++SGYA+LG+ +            
Sbjct: 253 HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEK 312

Query: 243 -------------------EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
                              EA++LF ++Q   ++ + +T  SV++A + + AL   K +H
Sbjct: 313 DLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIH 372

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           ++  +      + + N+LIDMY+KCG+L  +R VF+NM  + VISW++M+  ++ HG   
Sbjct: 373 TYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDAD 432

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
             + LF+ M+E+N ++P+ VT++ VL  CSH G+ + G   F  +++ +    P+ EHYG
Sbjct: 433 SAIALFHRMKEQN-IEPNGVTFIGVLYACSHAGLVEEGQKFFSSMIN-EHRISPQREHYG 490

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+  RA  + +A+E I+ MPF P   I GSL+ AC+ H  +++GEF   RL+E+EP+
Sbjct: 491 CMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPD 550

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           + G  V+LSN+YA   RW+DV  VR+LMK K V+K+   S IE++  +H F  +DR H  
Sbjct: 551 HDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQ 610

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
            +E+  K+  +  + K  GY P  S +L D++EE+K++V+L HSEKLAL +GLIG  + +
Sbjct: 611 SDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKES 670

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            IR++KNLRIC DCH+F K VSKV+  ++ +RD+ RFHH   G CSC DYW
Sbjct: 671 CIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/610 (38%), Positives = 366/610 (60%), Gaps = 11/610 (1%)

Query: 33  LKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  LC N +   A   L  M   G+        ++L  CV          +H + +K   
Sbjct: 140 LSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGL 199

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   LI  Y K   L++A  +F  M  R++V+W ++ISA  Q      A+ LF  
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHG 259

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFE-SHIYVGSSLLDMYAKA 207
           M+ S   P+  T  + L S     G ELG K +H  + +  ++   I  G++++DMYAK 
Sbjct: 260 MMESGVCPDVLTLVS-LASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKM 318

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASV 266
            +I  A+ VF+ LP+RDVVS   +I+GY Q GL  EAI ++  +   EG+     T+ SV
Sbjct: 319 SKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSV 378

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L A S L  L  G ++H+  ++  +   V +   LID+Y+KCG L  +  +F++M  R+ 
Sbjct: 379 LPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST 438

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
             WNA++ G   HG G + + LF+ M++E ++KPD VT++++L+ CSH G+ D+G + F 
Sbjct: 439 GPWNAIIAGLGVHGHGAKALSLFSQMQQE-EIKPDHVTFVSLLAACSHAGLVDQGRSFF- 496

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           +++    G  P  +HY C+VDMLGRAG++ EA EFI++MP +P +A+ G+LLGACR+H N
Sbjct: 497 DLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGN 556

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           V++G+   Q L E++PEN G YV++SN+YA  G+W+ V  VR L++ + + K PG S +E
Sbjct: 557 VEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSME 616

Query: 507 LDQILHTFHASDRS--HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           +   +  F++  ++  HP  EE+   +  L  K K AGYVPD S VL DV+E++KE++L 
Sbjct: 617 VKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILN 676

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSE+LA+ FG+I TP G P+ + KNLR+C DCH+  K++SK+  R++ +RD NRFHH  
Sbjct: 677 NHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFK 736

Query: 625 EGTCSCGDYW 634
           +G CSCGD+W
Sbjct: 737 DGHCSCGDFW 746



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 221/454 (48%), Gaps = 28/454 (6%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V+    L+  Y +   +++A ++FDEM ER+V +W AM+S   +   + +A+ L  RM
Sbjct: 100 PNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRM 159

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           +      +  T ++VL  C       L   +H   +K      ++V ++L+D+Y K G +
Sbjct: 160 VGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGML 219

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EA  VF  +  RD+V+  +IIS   Q G    A+ELF  +   G+  + +T  S+ +A+
Sbjct: 220 TEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAV 279

Query: 271 SGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           +        K VH +V R  +++   ++  N+++DMY+K   +  +++VFDN+ +R V+S
Sbjct: 280 AQCGDELGAKSVHCYVRRRGWDVGD-IIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVS 338

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN ++ GY ++G+  E + ++N M     +KP   T+++VL   S+ G   +G+ +    
Sbjct: 339 WNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM--HA 396

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGACRVHY 445
           +  K G   ++    C++D+  + G++ EA+   ++MP     P  AI+  L      H 
Sbjct: 397 LSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGL--GVHGHG 454

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
              +  F   +  EI+P+    +V   +L A+                 A   D GRS+ 
Sbjct: 455 AKALSLFSQMQQEEIKPD----HVTFVSLLAAC--------------SHAGLVDQGRSFF 496

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +L Q ++      + +    ++  +  QL   F+
Sbjct: 497 DLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFE 530


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 350/575 (60%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L A V       GQ++HA  + T +     +  +++ FY+K + + + R +FDEM 
Sbjct: 253 FSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E + VS+  +IS+YSQ      +L+ F  M     +   F FAT+L+  A     ++G+Q
Sbjct: 313 ELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ 372

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   + +  +S ++VG+SL+DMYAK     EA  +F+ LP+R  VS TA+ISGY Q GL
Sbjct: 373 LHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGL 432

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
               ++LF K++   + ++  T+A+VL A +  A+L  GKQ+H+ ++R      V   + 
Sbjct: 433 HGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG 492

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+KCGS+  + +VF+ M +R  +SWNA++  ++ +G G   +  F  M E   ++P
Sbjct: 493 LVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESG-LQP 551

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DSV+ L VL+ CSH G  ++G   F  +     G  P+ +HY C++D+LGR GR  EA +
Sbjct: 552 DSVSILGVLTACSHCGFVEQGTEYFQAMSPIY-GITPKKKHYACMLDLLGRNGRFAEAEK 610

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAG 479
            +  MPFEP   +  S+L ACR+H N  + E   ++L  +E   +A  YV +SN+YA+AG
Sbjct: 611 LMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAG 670

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            WE V  V++ M+E+ + K P  SW+E++  +H F ++D++HP  +E+  K+ +L+ + +
Sbjct: 671 EWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIE 730

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GY PD S V+ DVDE+ K + L  HSE+LA+ F LI TPEG PI V+KNLR C DCH 
Sbjct: 731 REGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHA 790

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +SK+  R++++RD +RFHH  EG CSCGDYW
Sbjct: 791 AIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 195/368 (52%), Gaps = 5/368 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDE 118
           + TLL  C +        +VHA  +K  +    +L    ++  + CE   L  A  +F+E
Sbjct: 150 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEE 209

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           + E++ V++  +I+ Y +     E+++LF++M +S  +P++FTF+ VL +  G   F LG
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +Q+H+L + + F     VG+ +LD Y+K  R+ E R +F+ +PE D VS   +IS Y+Q 
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              E ++  FR++Q  G       +A++L+  + L++L  G+Q+H   L     S + + 
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVG 389

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+DMY+KC     +  +F ++ +RT +SW A++ GY + G+    ++LF  MR  N +
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN-L 448

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           + D  T+  VL   +       G  +   I+  + G    +     +VDM  + G + +A
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFII--RSGNLENVFSGSGLVDMYAKCGSIKDA 506

Query: 419 LEFIKNMP 426
           ++  + MP
Sbjct: 507 VQVFEEMP 514



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 10/292 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +G + R   + T+L+   N  +L+ G+++H   +       +++   L+  Y KCE
Sbjct: 341 EMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCE 400

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              +A  +F  + +R  VSWTA+IS Y QK      L LF +M  S+   ++ TFATVL 
Sbjct: 401 MFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLK 460

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A      LGKQ+H+ II+S    +++ GS L+DMYAK G I +A  VFE +P+R+ VS
Sbjct: 461 ASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS 520

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+IS +A  G  E AI  F K+   G+  + V+   VLTA S    +  G +    + 
Sbjct: 521 WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAM- 579

Query: 288 RFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
               P Y +         ++D+  + G    + ++ D M  E   I W+++L
Sbjct: 580 ---SPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 4/249 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEPNEFTFATVL 166
           +S AR +FD M +R VV+WT ++  Y++ +H  EA  LF +M RS   T P+  TF T+L
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIY--VGSSLLDMYAKAGRIHEARGVFECLPERD 224
             C  A       Q+H+  +K  F+++ +  V + LL  Y +  R+  A  +FE +PE+D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            V+   +I+GY + GL  E+I LF K++  G   +  T++ VL A+ GL     G+Q+H+
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
             +         + N ++D YSK   +  +R +FD M E   +S+N ++  YS+      
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 345 VVELFNLMR 353
            +  F  M+
Sbjct: 335 SLHFFREMQ 343



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEG 255
           ++++  + K G +  AR +F+ +P+R VV+ T ++  YA+    +EA +LFR++      
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTY 313
            + ++VT+ ++L   +         QVH+  ++  F+   ++ + N L+  Y +   L  
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +  +F+ + E+  +++N ++ GY K G+  E + LF  MR+    +P   T+  VL    
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVV 261

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             G+ D  L      +    GF  +      ++D   +  RV E       MP
Sbjct: 262 --GLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 17/269 (6%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKAL--------IEMATLGLEMRFEEYDTLLNA 67
           F + +L   S P       T   +G + K L         +M    L      + T+L A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
             +  +L  G+++HA +I++     V+  + L+  Y KC  + DA ++F+EM +RN VSW
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK---QIHSL 184
            A+ISA++       A+  F +M+ S  +P+  +   VLT+C+     E G    Q  S 
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGL 240
           I     +   Y  + +LD+  + GR  EA  + + +P E D +  +++++    +    L
Sbjct: 582 IYGITPKKKHY--ACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSL 639

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTA 269
            E A E    ++     + YV+ +++  A
Sbjct: 640 AERAAEKLFSMEKLRDAAAYVSMSNIYAA 668



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 290 EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
           E+P    V  N++I  + K G ++ +R +FD M +RTV++W  ++  Y+++    E  +L
Sbjct: 73  EMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKL 132

Query: 349 FNLM-REENKVKPDSVTYLAVLSGCS 373
           F  M R  +   PD VT+  +L GC+
Sbjct: 133 FRQMCRSSSCTLPDHVTFTTLLPGCN 158


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 352/585 (60%), Gaps = 39/585 (6%)

Query: 84  MIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
           M++TC     +  ++++ F   +    L  AR +F+++      +  ++I  Y+ K    
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +A+  +  M+    +P+ FTF ++  SC        GKQ+H    K  F S  Y+ ++L+
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLM 117

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK----------- 250
           +MY+  G +  AR VF+ +  + VVS   +I  YAQ  L  EAI+LFR+           
Sbjct: 118 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWN 177

Query: 251 ---------------------LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
                                +Q+ G+  + VT AS+L A + L AL  GK +H ++ + 
Sbjct: 178 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE 237

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           +I   V L  +L+DMY+KCGS+  + RVF  M E+ V++W A++VG +  G G + +ELF
Sbjct: 238 KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELF 297

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           + M + ++VKPD++T++ VL+ CSH G+ + G+A F+ + + K G +P IEHYGC+VDML
Sbjct: 298 HEM-QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPN-KYGIQPSIEHYGCMVDML 355

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
           GRAGR+ EA + I+NMP  P   +L  LL ACR+H N+ + E   Q+L+E++P+N G YV
Sbjct: 356 GRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYV 415

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+Y+S   WE   ++RELM E+ + K PG S IE+  ++H F   D SHP   E+  
Sbjct: 416 LLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYE 475

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
            +  +  + K AGYVPD S VL+D+DE++KE  L  HSEKLA+ FGL+ T  G PIRV+K
Sbjct: 476 TLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVK 535

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH+  KF+S+VY R++ +RD+NRFHH  +G+CSC D+W
Sbjct: 536 NLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 36/306 (11%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   GL+     + +L  +C     L  G+++H H  K  +    Y++  L+  Y+ C C
Sbjct: 69  MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQ----------------KAHSF----------- 141
           L  ARK+FD+M  ++VVSW  MI AY+Q                 ++ F           
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 142 -----EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL+LF  M  S  + ++ T A++L +C      ELGK +H  I K   E  + +
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 245

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++L+DMYAK G I  A  VF+ +PE+DV++ TA+I G A  G   +A+ELF ++Q+  +
Sbjct: 246 GTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEV 305

Query: 257 ISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
             + +T+  VL A S    +  G    +S   ++ I   +     ++DM  + G +  + 
Sbjct: 306 KPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAE 365

Query: 316 RVFDNM 321
            +  NM
Sbjct: 366 DLIQNM 371


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 358/618 (57%), Gaps = 33/618 (5%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E        +++AC   + L  G++V +++ +        +   L+  Y KC 
Sbjct: 221 QMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCG 280

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  AR++FDE   +N+V +  ++S Y     + + L +   ML+    P++ T  + + 
Sbjct: 281 DICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIA 340

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------ 221
           +CA      +GK  H+ ++++  E    + ++++DMY K G+   A  VFE +P      
Sbjct: 341 ACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVT 400

Query: 222 -------------------------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
                                    ERD+VS   +I    Q+ + EEAIELFR++Q +G+
Sbjct: 401 WNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGI 460

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             + VT   + +A   L AL   K V +++ + +I   + L  +L+DM+S+CG  + +  
Sbjct: 461 PGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMH 520

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF  M +R V +W A +   +  G     +ELFN M E+ KVKPD V ++A+L+ CSHGG
Sbjct: 521 VFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQ-KVKPDDVVFVALLTACSHGG 579

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
             D+G  +F  + +   G  P I HYGC+VD+LGRAG + EA++ I++MP EP   + GS
Sbjct: 580 SVDQGRQLFWSM-EKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGS 638

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL ACR H NV++  +  ++L ++ PE  G +V+LSN+YASAG+W DV RVR  MKEK V
Sbjct: 639 LLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGV 698

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K PG S IE+  ++H F + D SH     +   +++++ +  EAGYVPD + VL DVDE
Sbjct: 699 QKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDE 758

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           ++KE +L  HSEKLA+ +GLI T +G PIRV+KNLR+C DCH+FAK VSK+Y R++++RD
Sbjct: 759 QEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRD 818

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NR+H   EG CSC DYW
Sbjct: 819 NNRYHFFKEGFCSCRDYW 836



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 201/417 (48%), Gaps = 34/417 (8%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           ++M  +G+      +  LL+AC     L  G +VH  ++K      +++   LI FY +C
Sbjct: 119 VQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAEC 178

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +   RK+FD M ERNVVSWT++I+ YS +  S EA++LF +M  +  EPN  T   V+
Sbjct: 179 GKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVI 238

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++CA     ELGK++ S I +   E    + ++L+DMY K G I  AR +F+    +++V
Sbjct: 239 SACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLV 298

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
               I+S Y       + + +  ++  +G   + VT  S + A + L  L  GK  H++V
Sbjct: 299 MYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYV 358

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG------ 340
           LR  +  +  + N++IDMY KCG    + +VF++M  +TV++WN+++ G  + G      
Sbjct: 359 LRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAW 418

Query: 341 -------------------------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
                                    M  E +ELF  M+ +  +  D VT + + S C + 
Sbjct: 419 RIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG-IPGDRVTMVGIASACGYL 477

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           G  D    V   I   K+    +++    +VDM  R G    A+   K M     +A
Sbjct: 478 GALDLAKWVCTYIE--KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSA 532



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 196/366 (53%), Gaps = 12/366 (3%)

Query: 69  VNQRTLRGGQRVHAHMIKT---CYRPPVYLRTRLI---VFYNKCECLSDARKMF--DEMR 120
           VN +TL+  +++H  M+K    C++P   L  +LI   V     E L  AR  F  D+  
Sbjct: 33  VNCKTLKELKQLHCDMMKKGLLCHKPASNL-NKLIASSVQIGTLESLDYARNAFGDDDGN 91

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             ++  +  +I  Y+      +A+ L+++ML     P+++TF  +L++C+       G Q
Sbjct: 92  MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  ++K   E  I+V +SL+  YA+ G++   R +F+ + ER+VVS T++I+GY+   L
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDL 211

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +EA+ LF ++   G+  N VT   V++A + L  L  GK+V S++    +    ++ N+
Sbjct: 212 SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNA 271

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY KCG +  +R++FD  + + ++ +N ++  Y  H    +V+ + + M ++   +P
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGP-RP 330

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D VT L+ ++ C+  G    G +    ++  ++G E        ++DM  + G+   A +
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVL--RNGLEGWDNISNAIIDMYMKCGKREAACK 388

Query: 421 FIKNMP 426
             ++MP
Sbjct: 389 VFEHMP 394



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 17/370 (4%)

Query: 10  AFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMR--FEEYDTLLNA 67
           A   L    + L     P     L T+ +  QL    +  ++    +R   E +D + NA
Sbjct: 313 ASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNA 372

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
            ++     G +     + +      V     LI    +   +  A ++FDEM ER++VSW
Sbjct: 373 IIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSW 432

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
             MI A  Q +   EA+ LF  M       +  T   + ++C      +L K + + I K
Sbjct: 433 NTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEK 492

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           ++    + +G++L+DM+++ G    A  VF+ + +RDV + TA I   A  G  E AIEL
Sbjct: 493 NDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIEL 552

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-----HSHVLRFEIPSYVVLQNSLI 302
           F ++  + +  + V + ++LTA S   ++  G+Q+      +H +R  I  Y      ++
Sbjct: 553 FNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHY----GCMV 608

Query: 303 DMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREE-NKVKP 360
           D+  + G L  +  +  +M  E   + W ++L    KH    + VEL +   E+  ++ P
Sbjct: 609 DLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKH----KNVELAHYAAEKLTQLAP 664

Query: 361 DSVTYLAVLS 370
           + V    +LS
Sbjct: 665 ERVGIHVLLS 674


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 327/526 (62%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A K+FDEM ERNV +W AM+S   Q   +   L LF  M      P+EFT  +VL  
Sbjct: 39  LDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRG 98

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      GKQ+H+ ++K  +E ++ VGSSL  MY K+G + E   V + +  R+VV+ 
Sbjct: 99  CAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAW 158

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I+G AQ G  E  ++L+  +++ G+  + +T  SV+++ + LA L  G+Q+H+  ++
Sbjct: 159 NTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIK 218

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
               S V + +SLI MYSKCG L  S +   +      + W++M+  Y  HG G E V L
Sbjct: 219 AGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHL 278

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M +E  +  + VT+L++L  CSH G++++G+  F  +V+ K G +P +EHY CVVD+
Sbjct: 279 FEQMEQEG-LGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVE-KYGLKPRLEHYTCVVDL 336

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I++MP E    I  +LL ACR+H N D+     + ++ + P+++  Y
Sbjct: 337 LGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATY 396

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN++ASA RW+DV++VR  M+++ V K+PG SW+E+   +  F   D+SHPM EE+ 
Sbjct: 397 VLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEID 456

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +K+L  + K  GYVPD + V +D D E+KE  L+ HSEKLA+ FGL+  P G+PIRV+
Sbjct: 457 LYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVM 516

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRIC DCH   K +S +  R++ +RD +RFHH   G CSCGDYW
Sbjct: 517 KNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 145/293 (49%), Gaps = 12/293 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG         ++L  C   R    G++VHA+++K  Y   + + + L   Y K  
Sbjct: 79  EMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSG 138

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L +  K+   MR RNVV+W  +I+  +Q  H    L+L+  M  S   P++ T  +V++
Sbjct: 139 SLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVIS 198

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA-RGVFECLPERDVV 226
           S A       G+QIH+  IK+   S + V SSL+ MY+K G + ++ + + +C    D V
Sbjct: 199 SSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDC-EHPDSV 257

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS--GLAALGHG---KQ 281
             +++I+ Y   G  EEA+ LF +++ EG+  N VT+ S+L A S  GL   G G     
Sbjct: 258 LWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLM 317

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           V  + L+  +  Y      ++D+  + G L  +  +  +M  E  V+ W  +L
Sbjct: 318 VEKYGLKPRLEHYTC----VVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLL 366



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 9/279 (3%)

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L++ + + G +  A  VF+ + ER+V +  A++SG  Q   +E  + LFR++   G + +
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPD 88

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             T  SVL   +GL A   GKQVH++VL++     +V+ +SL  MY K GSL    +V  
Sbjct: 89  EFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIK 148

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  R V++WN ++ G +++G    V++L+N+M+    ++PD +T ++V+S  +      
Sbjct: 149 AMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSG-LRPDKITLVSVISSSAELATLF 207

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
           +G  +  E +  K G    +     ++ M  + G + ++++ + +    P + +  S++ 
Sbjct: 208 QGQQIHAEAI--KAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCE-HPDSVLWSSMIA 264

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAG--NYVILSNLYA 476
           A   H     GE       ++E E  G  +   LS LYA
Sbjct: 265 AYGFHGR---GEEAVHLFEQMEQEGLGGNDVTFLSLLYA 300



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           ++  N LI+ + + G L  + +VFD M ER V +WNAM+ G  +       + LF  M E
Sbjct: 23  IMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHE 82

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              + PD  T  +VL GC+       G  V   ++  K G+E  +     +  M  ++G 
Sbjct: 83  LGFL-PDEFTLGSVLRGCAGLRASYAGKQVHAYVL--KYGYEFNLVVGSSLAHMYMKSGS 139

Query: 415 VGEALEFIKNMPFEPTAA 432
           +GE  + IK M      A
Sbjct: 140 LGEGEKVIKAMRIRNVVA 157



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 13/199 (6%)

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY K G +  +   F+ M  R ++S N ++ G+ +HG     +++F+ M E N       
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERN-----VA 55

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG--RAGRVGEALE- 420
           T+ A++SG       + GL +F E+ +   GF P+    G V+      RA   G+ +  
Sbjct: 56  TWNAMVSGLIQFEFNENGLFLFREMHEL--GFLPDEFTLGSVLRGCAGLRASYAGKQVHA 113

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           ++    +E    +  SL        ++  GE V  + M I    A N +I  N  A  G 
Sbjct: 114 YVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV-IKAMRIRNVVAWNTLIAGN--AQNGH 170

Query: 481 WEDVTRVRELMKEKAVTKD 499
           +E V  +  +MK   +  D
Sbjct: 171 FEGVLDLYNMMKMSGLRPD 189


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 345/573 (60%), Gaps = 7/573 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC           +H  +IK  +   V+++  L+  Y KC  +  A+ +FD +  R 
Sbjct: 160 VLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRT 219

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSWT++IS Y+Q   + EAL +F +M  +  +P+     ++L +       E G+ IH 
Sbjct: 220 IVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHG 279

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +IK   E    +  SL   YAK G +  A+  F+ +   +V+   A+ISGYA+ G  EE
Sbjct: 280 FVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEE 339

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF  +    +  + VT  S + A + + +L   + +  +V +    S + +  SLID
Sbjct: 340 AVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLID 399

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+ ++RRVFD  S++ V+ W+AM++GY  HG G E + L+++M++   V P+ V
Sbjct: 400 MYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAG-VFPNDV 458

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVVDMLGRAGRVGEALEF 421
           T++ +L+ C+H G+   G  +FH    C   FE  P  EHY CVVD+LGRAG +GEA  F
Sbjct: 459 TFIGLLTACNHSGLVKEGWELFH----CMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAF 514

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I  +P EP  ++ G+LL AC+++  V +GE+   +L  ++P N G+YV LSNLYAS+  W
Sbjct: 515 IMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLW 574

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V  VR LM+EK + KD G S IE++  L  FH  D+SHPM +E+  ++++L  + KE 
Sbjct: 575 DCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEV 634

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           G+VP    VL+D++ E+KE+ L  HSE++A+ +GLI T  G  +R+ KNLR CV+CH+  
Sbjct: 635 GFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAI 694

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 695 KLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 209/412 (50%), Gaps = 17/412 (4%)

Query: 10  AFSSLTFTQQQLTVPSFPPN--PQNLKTLCSNGQLTKALIEMATLGLEMRFEE---YDTL 64
           + S L    Q++T P  P     + +K LC     + AL     +  +  F     Y +L
Sbjct: 7   SISPLATKNQKVTTPQIPRCFVLKFVKYLC----FSSALHPEHFVNHDHCFNSDSFYASL 62

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           ++   ++R L    ++H  ++ +  +   +L T+L+   +    +  ARK+FDE    +V
Sbjct: 63  IDNSTHKRHL---DQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDV 119

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
             W A+I +YS+     + + ++  M  +   P+ FTF  VL +C     F L   IH  
Sbjct: 120 FMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQ 179

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           IIK  F S ++V + L+ +YAK G I  A+ VF+ L  R +VS T+IISGYAQ G   EA
Sbjct: 180 IIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEA 239

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + +F +++  G+  +++   S+L A + +  L  G+ +H  V++  +     L  SL   
Sbjct: 240 LRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF 299

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +T ++  FD M    VI WNAM+ GY+K+G   E V LF+ M   N +KPDSVT
Sbjct: 300 YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN-IKPDSVT 358

Query: 365 YL-AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
              AVL+    G +E   LA + +    K  +  +I     ++DM  + G V
Sbjct: 359 VRSAVLASAQVGSLE---LAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSV 407



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 145/276 (52%), Gaps = 3/276 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL    +M   G++  +    ++L A  +   L  G+ +H  +IK        L
Sbjct: 233 NGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPAL 292

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L  FY KC  ++ A+  FD+M+  NV+ W AMIS Y++  H+ EA+NLF  M+  + 
Sbjct: 293 LISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNI 352

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+  T  + + + A     EL + +   + KSN+ S I+V +SL+DMYAK G +  AR 
Sbjct: 353 KPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARR 412

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+   ++DVV  +A+I GY   G   EAI L+  ++  G+  N VT+  +LTA +    
Sbjct: 413 VFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGL 472

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           +  G ++   +  FEI       + ++D+  + G L
Sbjct: 473 VKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYL 508


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 346/572 (60%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC  +  L   + +H +  +  +     +    +  Y KC  L  A ++F  M  +
Sbjct: 406 NVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGK 465

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            V SW A+I A++Q     ++L+LF+ M+ S  +P+ FT  ++L +CA       GK+IH
Sbjct: 466 TVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++++  E   ++G SL+ +Y +   +   + +F+ +  + +V    +I+G++Q  L  
Sbjct: 526 GFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPC 585

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++ FR++   G+    +    VL A S ++AL  GK+VHS  L+  +     +  +LI
Sbjct: 586 EALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALI 645

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG +  S+ +FD ++E+    WN ++ GY  HG G + +ELF LM+ +   +PDS
Sbjct: 646 DMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGG-RPDS 704

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+L VL  C+H G+   GL    ++ +   G +P++EHY CVVDMLGRAG++ EAL+ +
Sbjct: 705 FTFLGVLIACNHAGLVTEGLKYLGQMQNLY-GVKPKLEHYACVVDMLGRAGQLTEALKLV 763

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MP EP + I  SLL +CR + +++IGE V ++L+E+EP  A NYV+LSNLYA  G+W+
Sbjct: 764 NEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWD 823

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V +VR+ MKE  + KD G SWIE+  +++ F  SD S    +++     +L  K  + G
Sbjct: 824 EVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIG 883

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y PD SCVL++++EE K K+L  HSEKLA++FGL+ T +G  +RV KNLRICVDCHN  K
Sbjct: 884 YKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIK 943

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            VSKV  R + +RD  RFHH   G C+CGD+W
Sbjct: 944 LVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 254/521 (48%), Gaps = 63/521 (12%)

Query: 2   RRPKKQSRAFSSLTFTQQQLT--VPSFPPNPQNLKTLCSNGQLTKAL------IEMATLG 53
           R     +  F   T  +  LT    +  P  Q L  LC +G L  AL       +  T+ 
Sbjct: 27  RNHNNSNNLFPPFTVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGTVS 86

Query: 54  L-EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLS 110
             ++  E    LL AC + + +  G++VHA ++   +  R  V L TR+I  Y+ C   S
Sbjct: 87  SSDISKEAIGILLRACGHHKNIHVGRKVHA-LVSASHKLRNDVVLSTRIIAMYSACGSPS 145

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSC 169
           D+R +FD  +E+++  + A++S YS+ A   +A++LF+ +L  +D  P+ FT   V  +C
Sbjct: 146 DSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKAC 205

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           AG    ELG+ +H+L +K+   S  +VG++L+ MY K G +  A  VFE +  R++VS  
Sbjct: 206 AGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWN 265

Query: 230 AIISGYAQLGLDEEAIELFRKLQV---EGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +++   ++ G   E   +F++L +   EG++ +  T  +V+ A + +  +  G  VH   
Sbjct: 266 SVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLA 325

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
            +  I   V + NSL+DMYSKCG L  +R +FD    + V+SWN ++ GYSK G  R V 
Sbjct: 326 FKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVF 385

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCS-----------------HGGMEDRGLA------ 383
           EL   M+ E KV+ + VT L VL  CS                 HG ++D  +A      
Sbjct: 386 ELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAA 445

Query: 384 -VFHEIVDCKD----GFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAIL 434
                 +DC +    G E + +  +  ++    + G  G++L+    M     +P    +
Sbjct: 446 YAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTI 505

Query: 435 GSLLGAC-RVHY--------------NVDIGEFVGQRLMEI 460
           GSLL AC R+ +               +++ EF+G  LM +
Sbjct: 506 GSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSL 546



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 151/315 (47%), Gaps = 6/315 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T++ AC     +R G  VH    K      V +   L+  Y+KC  L +AR +FD    +
Sbjct: 304 TVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGK 363

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQI 181
           NVVSW  +I  YS++        L   M R +    NE T   VL +C+G       K+I
Sbjct: 364 NVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEI 423

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H    +  F     V ++ +  YAK   +  A  VF  +  + V S  A+I  +AQ G  
Sbjct: 424 HGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFP 483

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQN 299
            ++++LF  +   GM  +  T  S+L A + L  L  GK++H  +LR   E+  ++ +  
Sbjct: 484 GKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGI-- 541

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL+ +Y +C S+   + +FD M  ++++ WN M+ G+S++ +  E ++ F  M     +K
Sbjct: 542 SLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQML-SGGIK 600

Query: 360 PDSVTYLAVLSGCSH 374
           P  +    VL  CS 
Sbjct: 601 PQEIAVTGVLGACSQ 615


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 335/551 (60%), Gaps = 37/551 (6%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F   +  +V  WTA+I  ++ +    +ALN + +ML    EPN FTF+++L  C     
Sbjct: 31  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP---- 86

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA---- 230
            E GK +HS  +K  F+S +YV + LLD+YA+ G +  A+ +F+ +PE+ +VS TA    
Sbjct: 87  IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 231 ---------------------------IISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
                                      +I GY Q G+  EA+ LFR++       N VT 
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            SVL+A   L AL  G+ VHS++    I   V +  +L+DMYSKCGSL  +R VFD + +
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 266

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + V++WN+M+VGY+  G  +E ++LF  M     + P ++T++ +LS C H G    G  
Sbjct: 267 KDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWD 325

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           +F+++ D + G EP+IEHYGC+V++LGRAG V +A E +KNM  EP   + G+LLGACR+
Sbjct: 326 IFNKMKD-EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 384

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H  + +GE + + L++    N+G Y++LSN+YA+ G W+ V R+R +MK+  V K+PG S
Sbjct: 385 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 444

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
            IE++  +H F A   +HP R+E+   +++++   K  GY P    VL+D+ E +KE+ L
Sbjct: 445 SIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSL 504

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ FGLI T  G  I+++KNLR+C DCH   K +SK+ GRK+ +RD+NRFHH 
Sbjct: 505 EVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHF 564

Query: 624 VEGTCSCGDYW 634
           V G+CSCGDYW
Sbjct: 565 VNGSCSCGDYW 575



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 165/338 (48%), Gaps = 40/338 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK-- 105
           +M T G+E     + ++L  C     +  G+ +H+  +K  +   +Y+RT L+  Y +  
Sbjct: 65  QMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGG 120

Query: 106 -----------------------CEC------LSDARKMFDEMRERNVVSWTAMISAYSQ 136
                                    C      L  AR +FD M ER+ V W  MI  Y+Q
Sbjct: 121 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 180

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                EAL LF RML++  +PNE T  +VL++C      E G+ +HS I  +  + +++V
Sbjct: 181 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 240

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++L+DMY+K G + +AR VF+ + ++DVV+  ++I GYA  G  +EA++LF+ +   G+
Sbjct: 241 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGL 300

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
               +T+  +L+A      +  G  + + +   + I   +     ++++  + G +  + 
Sbjct: 301 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 360

Query: 316 RVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELF 349
            +  NM+ E   + W  +L     HG   +G ++VEL 
Sbjct: 361 ELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 398



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 79/365 (21%)

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           YA  GR+  +  +F       V   TAII G+A  GL E+A+  + ++  +G+  N  T+
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           +S+L     L  +  GK +HS  ++    S + ++  L+D+Y++ G +  ++++FD M E
Sbjct: 79  SSILK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 324 RTVIS-------------------------------WNAMLVGYSKHGMGREVVELFNLM 352
           ++++S                               WN M+ GY+++GM  E + LF  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            +  K KP+ VT L+VLS C   G  + G  V H  ++  +G +  +     +VDM  + 
Sbjct: 195 LKA-KAKPNEVTVLSVLSACGQLGALESGRWV-HSYIE-NNGIQFNVHVGTALVDMYSKC 251

Query: 413 GR-----------------------VG--------EALEFIKN---MPFEPTAAILGSLL 438
           G                        VG        EAL+  K+   M   PT      +L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 439 GACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
            AC     V  G  +  ++ +   IEP+   +Y  + NL   AG    V +  EL+K   
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPK-IEHYGCMVNLLGRAGH---VEQAYELVKNMN 367

Query: 496 VTKDP 500
           +  DP
Sbjct: 368 IEPDP 372



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++     +  V++ T L+  Y+KC  L DAR +FD++ ++
Sbjct: 208 SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 267

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           +VV+W +MI  Y+    S EAL LF  M R    P   TF  +L++C  +     G  I 
Sbjct: 268 DVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF 327

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQ 237
           + +  +   E  I     ++++  +AG + +A  + + +  E D V    ++     + +
Sbjct: 328 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 387

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTY 263
           + L E+ +EL     V+  ++N  TY
Sbjct: 388 IALGEKIVELL----VDQNLANSGTY 409


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/581 (39%), Positives = 358/581 (61%), Gaps = 3/581 (0%)

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
            E  + +   LL +    R+LR G ++HAH++K   +    +   LI  Y+K +    + 
Sbjct: 21  FEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSL 80

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++FDE  +++  +W+++ISA++Q      AL  F RML     P++  + +   +C    
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             ++GK +H L +K+ +   ++VGSSL+DMYAK G I +AR +F+ +PER+VVS + +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GYAQL    EA+ LF++  +E +  N  T++SV+   S    L  GK +H   L+    S
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
              + ++LI +YSKCG +  + +VFD +  R +  WN+ML+  ++H   + V  LF  M 
Sbjct: 261 SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG 320

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
               +KP+ +++L+VL  CSH G+ ++G   F  + D   G EPE EHY  +VD+LGRAG
Sbjct: 321 NVG-MKPNFISFLSVLYACSHAGLVEKGREYFSLMRDY--GIEPETEHYASLVDLLGRAG 377

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
           ++ EA+  IK MP  PT ++ G+LL  CR+H + ++  FV  R++E++  ++G +V+LSN
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSN 437

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQ 533
            YA+AGR+E+  R+R++++++ V K+ G SW+E    +HTF A DRSH    E+  K+++
Sbjct: 438 AYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEE 497

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L  + ++AGYV D S VL  VD E+K + +  HSE+LA+ FGLI  P G PIRV+KNLR+
Sbjct: 498 LEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRV 557

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH   KF+SK  GR + +RD NRFH   +G CSCGDYW
Sbjct: 558 CGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 350/572 (61%), Gaps = 4/572 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L A    + L+ G ++    IK  +   V L T LI  ++KC  +  AR +F E+R+++
Sbjct: 37  VLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKD 96

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE-LGKQIH 182
           ++S  AMIS ++    + +++ LF  +L S    +  T    L      FG   L   IH
Sbjct: 97  LISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVG-LIPVYSPFGHSYLCNCIH 155

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +K    SH  V ++L  +Y +   +  AR +F+   E+ + S  A+ISG  Q GL +
Sbjct: 156 GFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTD 215

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            AI LF+ +Q   +  N VT  S+L+A + + AL  G+ VHS +      S V +  +LI
Sbjct: 216 AAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALI 275

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCGS+T +R +FD M E+  ++WNAM+ GY  HG G+E ++LF  M   + VKP  
Sbjct: 276 DMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLS-SSVKPTG 334

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+L+VL  CSH G+   G  +FH +V    GFEP  EHY C+VD+LGRAG++ +ALEFI
Sbjct: 335 LTFLSVLYACSHAGLVKEGDGIFHTMVH-DFGFEPLAEHYACMVDILGRAGQLKKALEFI 393

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           K MP EP   + G+LLGAC +H + ++     ++L E++PEN G YV++SN+Y+   ++ 
Sbjct: 394 KAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYP 453

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
               VR++ K+K + K PG + IE+ Q+ H F + D+SHP  + + A++ +L+ K  EAG
Sbjct: 454 QAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAG 513

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           +  + + VL+D++EE+KE  +  HSEKLA+ FGLI T  GA IR+IKNLR+C+DCHN+ K
Sbjct: 514 FQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTK 573

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 574 FLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 158/301 (52%), Gaps = 10/301 (3%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFT-FATVLTSCAGAFGFELGKQIHSLIIKS 188
           MIS + + +   +++ +F  M+  +    + T    VL + A     +LG QI  L IK 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
            F SH+ + + L+ +++K G +  AR +F  + ++D++SC A+ISG+   G  E+++ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHG---KQVHSHVLRFEIPSYVVLQNSLIDMY 305
           ++L   G     V+ ++++  +   +  GH      +H   ++  I S+  +  +L  +Y
Sbjct: 121 KELLSSG---ERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVY 177

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            +   + ++R++FD  +E+T+ SWNAM+ G +++G+    + LF  M ++N V P+ VT 
Sbjct: 178 CRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTM-QKNNVNPNPVTV 236

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            ++LS C+  G    G  V H ++   + FE  +     ++DM  + G +  A E    M
Sbjct: 237 TSILSACAQIGALSLGEWV-HSLIK-SNRFESNVYVSTALIDMYAKCGSITVARELFDLM 294

Query: 426 P 426
           P
Sbjct: 295 P 295



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+ +    +   VY+ T LI  Y KC  ++ AR++FD M E+
Sbjct: 238 SILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEK 297

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           N V+W AMIS Y    H  EAL LF  ML S  +P   TF +VL +C+ A   + G  I 
Sbjct: 298 NEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIF 357

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           H+++    FE      + ++D+  +AG++ +A    + +P
Sbjct: 358 HTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMP 397


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 363/587 (61%), Gaps = 9/587 (1%)

Query: 54  LEMRFEEYDT---LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           ++ R EE  T   LL  C + + L  G+RVH+ ++K  Y     +   LI  Y KC  ++
Sbjct: 17  VDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIA 76

Query: 111 DARKMFDEMRERN--VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +AR +FD+++E+N  V+SW  +I AY+Q     EAL+LF  M       N+ T    + +
Sbjct: 77  EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDA 136

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA     E G+ +H++ +    ES   VG+SL++M+ K   +  AR VF+ LP +++V+ 
Sbjct: 137 CASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTW 196

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +++ Y+Q    ++AI++FR + +EG+  + VT+ +++ A + LAA   G+ VH  +  
Sbjct: 197 NNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITA 256

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             IP  V L  +++  Y KCG L  +R +FD++ ++  ++W+A+L  Y+++G   E +EL
Sbjct: 257 SGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIEL 316

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVD 407
           ++ M +   ++ + +T+L +L  CSH G    G+  F  ++  +D G  P  EHY  ++D
Sbjct: 317 YHEMVQ-GGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMI--RDFGVVPVFEHYLNLID 373

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGR+G++  + + I +MP+EP ++   +LLGACR+H +VD G  + + + E++PE++G 
Sbjct: 374 LLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGP 433

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           Y++LSNLY+S GR ++  R R+ M+ + +TK PG S IE+   +H F A+ + HP    +
Sbjct: 434 YILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRI 493

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
            A++++L  + KEAGYV D+  VL DV+EE+KE++L  HSE+LA+ FGLI TP G  + +
Sbjct: 494 HAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHI 553

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +KNLR+C DCH   K +SKV GRK+ +RD  RFHH   G CSCGDYW
Sbjct: 554 VKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/571 (40%), Positives = 348/571 (60%), Gaps = 4/571 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L +C     L  G+ V A+ +K       ++ + LI  Y  C  ++ AR +FD   E  V
Sbjct: 127 LKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGV 186

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V W A+++AY +     E + +F  ML      +E T  +V+T+C      +LGK +   
Sbjct: 187 VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGH 246

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           + +     +  + ++L+DMYAK G I +AR +F+ +  RDVV+ +A+ISGY Q     EA
Sbjct: 247 VDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREA 306

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF ++Q+  +  N VT  SVL+A + L AL  GK VHS+V R  +    +L  +L+D 
Sbjct: 307 LGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDF 366

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +   F++M  +   +W A++ G + +G GRE +ELF+ MRE   ++P  VT
Sbjct: 367 YAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAG-IEPTDVT 425

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           ++ VL  CSH  + + G   F  +   +D G +P +EHYGC+VD+LGRAG V EA +FI+
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMA--RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIR 483

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            MP EP A I  +LL +C VH NV IGE   ++++ + P ++G+YV+LSN+YASAG+W+D
Sbjct: 484 TMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKD 543

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
              VR+ MK++ + K PG S IELD ++  F A D  HP   E+  KV+++  + K AGY
Sbjct: 544 AAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGY 603

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VP+ + V  +V+E +KE  +  HSEKLA+ FGL+    GA IR+ KNLR+C DCH+  K 
Sbjct: 604 VPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKL 663

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SKVY R++ +RD+N FHH  +GTCSC DYW
Sbjct: 664 ISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 160/304 (52%), Gaps = 5/304 (1%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLR--SDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           +  ++ A+    H  +AL+LFI ML   S    ++ T A  L SC+     ++G+ + + 
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            +K    +  +V SSL+ MYA  G +  AR VF+   E  VV   AI++ Y + G   E 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           +E+F+ +   G+  + VT  SV+TA   +     GK V  HV    +     L  +L+DM
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  +RR+FD M  R V++W+AM+ GY++    RE + LF+ M +  +V+P+ VT
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM-QLARVEPNDVT 324

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            ++VLS C+  G  + G  V H  V  K      I     +VD   + G + +A+E  ++
Sbjct: 325 MVSVLSACAVLGALETGKWV-HSYVRRKRLSLTTILGTA-LVDFYAKCGCIDDAVEAFES 382

Query: 425 MPFE 428
           MP +
Sbjct: 383 MPVK 386



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++ +        L T L+ FY KC C+ DA + F+ M  +
Sbjct: 327 SVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVK 386

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           N  +WTA+I   +      EAL LF  M  +  EP + TF  VL +C+ +   E G++  
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHF 446

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYA---Q 237
            S+      +  +     ++D+  +AG + EA      +P E + V   A++S  A    
Sbjct: 447 DSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRN 506

Query: 238 LGLDEEAIE 246
           +G+ EEA++
Sbjct: 507 VGIGEEALK 515


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/635 (38%), Positives = 380/635 (59%), Gaps = 21/635 (3%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKAL--IEM---ATLGLEMRFEEYDTLLN 66
           +++T T    T+     +   LK+L  +G+L +AL  IE     +       E     L+
Sbjct: 16  TNITATSAPTTLHKHRLHNSTLKSLSKSGKLDEALRLIESWPSKSPATAPDVEACALFLH 75

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYR-------PPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +C++++ L  GQR++  ++    R        P  L+ +LI  ++ C  + +AR++F++ 
Sbjct: 76  SCISRKALEHGQRLYLQLLLYRDRCNHNLLNNPT-LKGKLITLFSVCGRVDEARRVFEDG 134

Query: 120 RERNVVS---WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            E   +    W AM   YS+  +  EAL L+  M+    +   F F+  L +C+      
Sbjct: 135 GEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLR 194

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+ +H+ ++K+  +    V ++LL +Y++ G   EA  +F+ +P R++VS  ++I+G  
Sbjct: 195 TGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLV 254

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     EAIE FR +Q +GM  ++VT  ++L   + + ALG GK++H+ +++        
Sbjct: 255 KKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAP 314

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + NSL+DMY+KCG++ Y RRVF+ M  + + SWN ++ GY+ +G   E +E F  M    
Sbjct: 315 VLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSG 374

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
              PD +T++A+LSGCSH G+ D G  +F E++    G  P +EHY C+VD+LGRAGR+ 
Sbjct: 375 -FSPDGITFIALLSGCSHAGLADDGCRLF-EMMKMDHGISPTVEHYACLVDVLGRAGRIK 432

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EALE +KNMPF+PT +I GSLL +CR+H NV + E V +RL E+EP NAGNYV+LSN+YA
Sbjct: 433 EALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYA 492

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK--VKQL 534
           +AG WE V  VRE M+++ +TK+ G SW+++   +HTF A   S+  R  +  K   K+L
Sbjct: 493 NAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGG-SNEFRNSVEYKKVWKRL 551

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
               +E GYVPD   VL+DV EE +   + GHSE+LA  F LI T  G PIR+ KNLR+C
Sbjct: 552 MEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVC 611

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           VDCH++ K +SKV GR + LRD NRFHH  +G CS
Sbjct: 612 VDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCS 646



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 143/597 (23%), Positives = 232/597 (38%), Gaps = 77/597 (12%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +   L AC +   LR G+ VHA ++K    P   +   L+  Y++  C  +A +MFD M 
Sbjct: 180 FSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMP 239

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN+VSW ++I+   +K   FEA+  F  M       +  T  T+L  CA       GK+
Sbjct: 240 HRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKE 299

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------------- 227
           IH++I+KS  +    V +SL+DMYAK G +   R VF  +  +D+ S             
Sbjct: 300 IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGR 359

Query: 228 ------------CT----------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
                       C+          A++SG +  GL ++   LF  ++++  IS  V + +
Sbjct: 360 MTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYA 419

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL----TYSRRVFD-- 319
            L  + G A  G  K+    V          +  SL++     G++      ++R+F+  
Sbjct: 420 CLVDVLGRA--GRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELE 477

Query: 320 -NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
            N +   V+  N     Y+  GM   V  +   M +    K    ++L + S        
Sbjct: 478 PNNAGNYVMLSNI----YANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKS-------- 525

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
                +   +    + F   +E+            R+ EA+E +  +P   T  +L  + 
Sbjct: 526 ----KIHTFVAGGSNEFRNSVEYKKV-------WKRLMEAMEEVGYVP--DTGVVLHDVS 572

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
              R  +     E +      I   +     I  NL         V  + ++     V +
Sbjct: 573 EEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLR 632

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKV--KQLSVKFKEAGYVPDMSCVLYDVDE 556
           D  R     D +  +   S      +E L         + K   A  +    C L +   
Sbjct: 633 DTNRFHHFKDGVCSSIQISTVYKIFQENLDGDTVGNPFASKPAFACGIEQCVCFLPNFSN 692

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           E    V L      A  F LI T  G PIR+ KNL +CVDCH++ K VSK  G   S
Sbjct: 693 EGNVDVWL------ATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSKNTGTAPS 743


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 347/557 (62%), Gaps = 2/557 (0%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++H  MIK C     Y+   L+  Y K   L DARK+F+ +  ++++ W A+IS  S  
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               E+L+LF RM +  ++ N  T A VL S A         Q+H+L  K  F S  +V 
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           + L+D Y K   +  A  VFE     ++++ T++I+  +Q    E+AI+LF ++  +G+ 
Sbjct: 445 NGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE 504

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +    +S+L A + L+A   GKQVH+H+++ +  + V   N+L+  Y+KCGS+  +   
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLA 564

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  + ++ V+SW+AM+ G ++HG G+  +++F  M +E ++ P+ +T  +VL  C+H G+
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDE-RIAPNHITLTSVLCACNHAGL 623

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            D     F  + +   G +   EHY C++D+LGRAG++ +A+E + +MPFE  AA+ G+L
Sbjct: 624 VDEAKGYFSSMKEMF-GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGAL 682

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           L A RVH + ++G+   ++L  +EPE +G +V+L+N YASAG W++V +VR+LMK+  V 
Sbjct: 683 LAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVK 742

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+P  SW+EL   +HTF   D+SHP   ++ AK+++L     +AGYVP++   L+DVD+ 
Sbjct: 743 KEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKS 802

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE +L  HSE+LA+ F LI TP GAPIRV KNLRIC DCH   KF+SK+  R++ +RD 
Sbjct: 803 EKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDI 862

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH  +G CSCGDYW
Sbjct: 863 NRFHHFSDGACSCGDYW 879



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 224/459 (48%), Gaps = 41/459 (8%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISAYS 135
           G +VHA  + T     +++   L+  Y     + +AR++FDE  R+RN VSW  M+SA+ 
Sbjct: 119 GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +     +A+ LF  M+ S   PNEF F+ V+ +C G+   E G+++H++++++ ++  ++
Sbjct: 179 KNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVF 238

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             ++L+DMY+K G IH A  VF  +P+ DVVS  A ISG    G D+ A+EL  +++  G
Sbjct: 239 TANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 256 MISNYVTYASVL--TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           ++ N  T +S+L   A +G  A   G+Q+H  +++    S   +  +L+DMY+K G L  
Sbjct: 299 LVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R+VF+ +  + ++ WNA++ G S  G   E + LF  MR+E     +  T  AVL   +
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGS-DINRTTLAAVLKSTA 417

Query: 374 -----------HGGMEDRG-LAVFHEIVDCKDGF-----------------EPEIEHYGC 404
                      H   E  G L+  H +    D +                    I  +  
Sbjct: 418 SLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTS 477

Query: 405 VVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME-- 459
           ++  L +     +A++    M     EP   +L SLL AC      + G+ V   L++  
Sbjct: 478 MITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537

Query: 460 -IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
            +    AGN ++ +  YA  G  ED       + +K V 
Sbjct: 538 FMTDVFAGNALVYT--YAKCGSIEDADLAFSGLPDKGVV 574



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E    LL      ++L  G  +HAH++K+        R  L+ FY+KC     AR++FDE
Sbjct: 5   ESISPLLTRYAATQSLFLGAHIHAHLLKSGLLHA--FRNHLLSFYSKCRLPGSARRVFDE 62

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
             +   VSW+++++AYS  A   EAL  F  M       NEF    VL  CA   G  LG
Sbjct: 63  TPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVL-KCAPDAG--LG 119

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYAQ 237
            Q+H++ + +     I+V ++L+ MY   G + EAR VF E   +R+ VS   ++S + +
Sbjct: 120 VQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                +A+ELF ++   G+  N   ++ V+ A +G   L  G++VH+ V+R      V  
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFT 239

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+L+DMYSK G +  +  VF  + +  V+SWNA + G   HG  +  +EL   M+    
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 358 VKPDSVTYLAVL 369
           V P+  T  ++L
Sbjct: 300 V-PNVFTLSSIL 310



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 179/366 (48%), Gaps = 10/366 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+       M   G ++       +L +  +   +    +VHA   K  +    ++   
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y KC CL  A K+F+E    N++++T+MI+A SQ  H  +A+ LF+ MLR   EP+
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            F  +++L +CA    +E GKQ+H+ +IK  F + ++ G++L+  YAK G I +A   F 
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            LP++ VVS +A+I G AQ G  + A+++FR++  E +  N++T  SVL A +    +  
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 279 GKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGY 336
            K   S +   F I       + +ID+  + G L  +  + ++M  E     W A+L   
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 337 SKH---GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
             H    +G+   E   ++  E      S T++ + +  +  GM D    V   + D K 
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEK-----SGTHVLLANTYASAGMWDEVAKVRKLMKDSKV 741

Query: 394 GFEPEI 399
             EP +
Sbjct: 742 KKEPAM 747


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 346/576 (60%), Gaps = 3/576 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           Y T+L +CV  R +R G+++HA ++ +       L TRL+  Y  C  +S AR++FDEM 
Sbjct: 71  YATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP 130

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELG 178
            + NV  W  +I AY++      A+ L+  ML     +P+ FT+  VL +CA       G
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H  ++++N+ + ++V + L+DMYAK G + EA  VF     RD     ++I+   Q 
Sbjct: 191 REVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQN 250

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G   EA+ L R +  EG+     T  S ++A +  +AL  G+++H +  R    S   L+
Sbjct: 251 GRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLK 310

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL+DMY+K G +  +  +F+ +  R +ISWNAM+ G+  HG      ELF+ MR E +V
Sbjct: 311 TSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQV 370

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +T++ VLS C+HGGM      VF  +V      +P ++HY C+VD+LG +GR  EA
Sbjct: 371 MPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYS-IKPTVQHYTCLVDVLGHSGRFKEA 429

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + IK M  +P + I G+LL  C++H NV++ E   Q+L+E+EPE+AGNYV+LSN+YA +
Sbjct: 430 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAES 489

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G+WE+  RVR+LM  + + K    SWIEL    H F   D SHP  +++  ++++L    
Sbjct: 490 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLI 549

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            + GYVPD + V ++V++++K  ++ GHSE+LA+ FGLI TP    + V KNLR+C DCH
Sbjct: 550 SQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCH 609

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              K +S++  R++ +RD NR+HH V G CSC D+W
Sbjct: 610 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 2/200 (1%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N   +AT+L SC  +     G+Q+H+ ++ S       + + L+D+YA  G +  AR VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 218 ECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYVTYASVLTALSGLAA 275
           + +P + +V     +I  YA+ G  E AIEL+R +   G M  +  TY  VL A + L  
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G++VH  V+R    + V +   LIDMY+KCG +  +  VF++ + R    WN+M+  
Sbjct: 187 LSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAA 246

Query: 336 YSKHGMGREVVELFNLMREE 355
             ++G   E + L   M  E
Sbjct: 247 CGQNGRPAEALTLCRNMAAE 266



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N+  YA++L +     A+  G+Q+H+ +L        VL   L+D+Y+ CG ++ +RRVF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 319 DNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           D M  +  V  WN ++  Y++ G     +EL+  M     +KPD+ TY  VL  C+   +
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACA--AL 184

Query: 378 EDRGLAVFHEIVD--CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
            D  L+   E+ D   +  +  ++     ++DM  + G + EA     +      AA+  
Sbjct: 185 LD--LSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIR-DAAVWN 241

Query: 436 SLLGAC 441
           S++ AC
Sbjct: 242 SMIAAC 247



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 18/244 (7%)

Query: 30  PQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           P    TLC N         MA  G+        + ++A      L  G+ +H +  +  +
Sbjct: 253 PAEALTLCRN---------MAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGF 303

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                L+T L+  Y K   +  A  +F+++  R ++SW AMI  +    H+  A  LF R
Sbjct: 304 GSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSR 363

Query: 150 MLRSDTE--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAK 206
           M RS+ +  P+  TF  VL++C      +  K++  L++   + +  +   + L+D+   
Sbjct: 364 M-RSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGH 422

Query: 207 AGRIHEARGVFE-CLPERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVT 262
           +GR  EA  V +  L + D     A+++G   +  + L E A++   +L+ E    NYV 
Sbjct: 423 SGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDA-GNYVL 481

Query: 263 YASV 266
            +++
Sbjct: 482 LSNI 485


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/625 (36%), Positives = 365/625 (58%), Gaps = 57/625 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC + + L   + +H++ I+       ++   LI  Y KC  + DA  +F+ M  ++
Sbjct: 265 ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKD 324

Query: 124 VVSWTAM-----------------------------------ISAYSQKAHSFEALNLFI 148
           VVSW AM                                   I+ Y+Q+ +  EAL+ F 
Sbjct: 325 VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQ 384

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------HIYV 196
           +M+   +EPN  T  ++L++CA       G + H+  +K    S             + V
Sbjct: 385 QMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVV 444

Query: 197 GSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKL--Q 252
            ++L+DMY+K      AR +F  +P  ER+VV+ T +I GYAQ G   +A++LF ++  +
Sbjct: 445 HNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISK 504

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCG 309
              +  N  T + +L A + L++L  GKQ+H++V R   +E   Y V  N LIDMYSKCG
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFV-ANCLIDMYSKCG 563

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +R VFD+M +R  +SW +M+ GY  HG G+E +++F+ M++   V PD +++L +L
Sbjct: 564 DVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV-PDDISFLVLL 622

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             CSH GM D+GL  F +I+    G     +HY CV+D+L R+GR+ +A + I+ MP EP
Sbjct: 623 YACSHSGMVDQGLDYF-DIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEP 681

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
           +AAI  +LL ACRVH NV++ E+   +L+ ++ EN G+Y ++SN+YA+A RW+DV R+R+
Sbjct: 682 SAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQ 741

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           LMK+  + K PG SW++  +   +F   DRSHP+  E+ + +++L  + K  GYVP+ + 
Sbjct: 742 LMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNF 801

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
            L+DVD+E+K  +L  HSEKLAL +GL+ T  G PIR+ KNLR+C DCH+   ++SK+  
Sbjct: 802 ALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVD 861

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
            ++ +RD +RFHH   G+CSCG YW
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 202/422 (47%), Gaps = 61/422 (14%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER-- 122
           L AC    + R G   H  +    +   V++   L+  Y++   L DA  +FDE+  +  
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215

Query: 123 -NVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNE----FTFATVLTSCAGAFGF 175
            +V+SW ++++A+ + ++   AL+LF  M  +  +   NE     +   +L +CA     
Sbjct: 216 DDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS-------- 227
              K+IHS  I++   +  +V ++L+D YAK G + +A  VF  +  +DVVS        
Sbjct: 276 PQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGY 335

Query: 228 ---------------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
                                       +A+I+GYAQ G  +EA++ F+++ + G   N 
Sbjct: 336 TQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNS 395

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY------------VVLQNSLIDMYSKC 308
           VT  S+L+A + L AL  G + H++ L+  + S             +V+ N+LIDMYSKC
Sbjct: 396 VTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKC 455

Query: 309 GSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTY 365
            S   +R +F+++   ER V++W  M+ GY+++G   + ++LF+ ++ +   V P++ T 
Sbjct: 456 RSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTI 515

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKN 424
             +L  C+H      G  + H  V     +E  +     C++DM  + G V  A     +
Sbjct: 516 SCILMACAHLSSLRMGKQI-HAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 425 MP 426
           MP
Sbjct: 575 MP 576



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           Y  P  L T ++  Y  C   SDA  + + +     V W  ++ A+ ++     A+ +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSC 138

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RMLR+ T+P+ FT    L +C     +  G   H LI  + FES+++V ++L+ MY+++G
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG 198

Query: 209 RIHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKL------QVEGMISN 259
            + +A  VF+ +  +   DV+S  +I++ + +      A++LF ++      +     S+
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            ++  ++L A + L AL   K++HS+ +R    +   + N+LID Y+KCGS+  +  VF+
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  + V+SWNAM+ GY++ G      ELF  MR+EN +  D +T+ AV++G +  G   
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN-IPLDVITWSAVIAGYAQRGYGQ 377

Query: 380 RGLAVFHEIV 389
             L  F +++
Sbjct: 378 EALDTFQQMI 387



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 32/312 (10%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY------------RPPVYL 95
           +M   G E       +LL+AC +   L  G   HA+ +K C                + +
Sbjct: 385 QMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVV 444

Query: 96  RTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
              LI  Y+KC     AR +F+ +  RERNVV+WT MI  Y+Q   S +AL LF  M+  
Sbjct: 445 HNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISK 504

Query: 154 D--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIY-VGSSLLDMYAKAGR 209
                PN +T + +L +CA      +GKQIH+ + + + +ES +Y V + L+DMY+K G 
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGD 564

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  AR VF+ +P+R+ VS T+++SGY   G  +EA+++F K+Q  G + + +++  +L A
Sbjct: 565 VDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA 624

Query: 270 LSGLAALGHGKQVHSHVLRFEI--PSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMS 322
            S      H   V   +  F+I    Y V+ ++     +ID+ ++ G L  + +    M 
Sbjct: 625 CS------HSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMP 678

Query: 323 -ERTVISWNAML 333
            E +   W A+L
Sbjct: 679 MEPSAAIWVALL 690


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 361/597 (60%), Gaps = 3/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N        +M  LG       +  +L A +    +  GQ+VH+ ++K  +   V++   
Sbjct: 221 NHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANA 280

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+ FY+K + + +ARK+F EM E + +S+  +I+  +      E+L LF  +  +  +  
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRR 340

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           +F FAT+L+  A +   E+G+QIHS  I ++  S + VG+SL+DMYAK  +  EA  +F 
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFA 400

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  +  V  TA+ISGY Q GL E+ ++LF ++    + ++  TYAS+L A + LA+L  
Sbjct: 401 DLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTL 460

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+HS ++R    S V   ++L+DMY+KCGS+  + ++F  M  R  +SWNA++  Y++
Sbjct: 461 GKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQ 520

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +G G   +  F  M     ++P+SV++L++L  CSH G+ + GL  F+ +       EP 
Sbjct: 521 NGDGGHALRSFEQMIHSG-LQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYK-LEPR 578

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            EHY  +VDML R+GR  EA + +  MPFEP   +  S+L +CR+H N ++      +L 
Sbjct: 579 REHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLF 638

Query: 459 EIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++   +A  YV +SN+YA+AG W+ V +V++ ++E+ + K P  SW+E+ Q  H F A+
Sbjct: 639 NMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSAN 698

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D SHP  +E++ K+ +L  + +E GY PD +C L++VDEE K + L  HSE++A+ F LI
Sbjct: 699 DTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALI 758

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TP+G+PI V+KNLR C DCH   K +SK+  R++++RD +RFHH  +G+CSC DYW
Sbjct: 759 STPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 200/364 (54%), Gaps = 3/364 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL+      ++    +VH H++K  Y   + +   L+  Y K   L  A  +F  M E+
Sbjct: 144 TLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEK 203

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++ A+++ YS++  + +A+NLF +M      P+EFTFA VLT+       E G+Q+H
Sbjct: 204 DNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVH 263

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S ++K NF  +++V ++LLD Y+K  RI EAR +F  +PE D +S   +I+  A  G  E
Sbjct: 264 SFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVE 323

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E++ELFR+LQ          +A++L+  +    L  G+Q+HS  +  +  S V++ NSL+
Sbjct: 324 ESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLV 383

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KC     + R+F +++ ++ + W A++ GY + G+  + ++LF  M    K+  DS
Sbjct: 384 DMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRA-KIGADS 442

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            TY ++L  C++      G  +   I+  + G    +     +VDM  + G + EAL+  
Sbjct: 443 ATYASILRACANLASLTLGKQLHSRII--RSGCLSNVFSGSALVDMYAKCGSIKEALQMF 500

Query: 423 KNMP 426
           + MP
Sbjct: 501 QEMP 504



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 141/251 (56%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I+ Y K   LS AR +FD M +R+VV+WT +I  Y+Q     EA NLF  M R    P+
Sbjct: 79  MIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPD 138

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             T AT+L+            Q+H  ++K  ++S + V +SLLD Y K   +  A  +F+
Sbjct: 139 HITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFK 198

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + E+D V+  A+++GY++ G + +AI LF K+Q  G   +  T+A+VLTA   +  +  
Sbjct: 199 HMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEF 258

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+QVHS V++      V + N+L+D YSK   +  +R++F  M E   IS+N ++   + 
Sbjct: 259 GQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAW 318

Query: 339 HGMGREVVELF 349
           +G   E +ELF
Sbjct: 319 NGRVEESLELF 329



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y K+G +  AR +F+ + +R VV+ T +I GYAQ     EA  LF  +   GM+ +++T 
Sbjct: 83  YLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITL 142

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           A++L+  +   ++    QVH HV++    S +++ NSL+D Y K  SL  +  +F +M+E
Sbjct: 143 ATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAE 202

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           +  +++NA+L GYSK G   + + LF  M++    +P   T+ AVL+        + G  
Sbjct: 203 KDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG-FRPSEFTFAAVLTAGIQMDDIEFGQQ 261

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           V   +V C   F   +     ++D   +  R+ EA +    MP
Sbjct: 262 VHSFVVKC--NFVWNVFVANALLDFYSKHDRIVEARKLFYEMP 302



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 290 EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
           E+P   V+  N++I  Y K G+L+ +R +FD+M +R+V++W  ++ GY++H    E   L
Sbjct: 67  EMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNL 126

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M     V PD +T   +LSG +     +    V   +V  K G++  +     ++D 
Sbjct: 127 FADMCRHGMV-PDHITLATLLSGFTEFESVNEVAQVHGHVV--KVGYDSTLMVCNSLLDS 183

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
             +   +G A    K+M  +        L G  +  +N D
Sbjct: 184 YCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHD 223



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G L  +R++FD M  + VIS N M++GY K G       LF+ M     V+   VT+  +
Sbjct: 56  GDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSM-----VQRSVVTWTML 110

Query: 369 LSGCSHGGMEDRGLAVFHEIVD-CKDGFEPE 398
           + G +     +R L  F+   D C+ G  P+
Sbjct: 111 IGGYAQ---HNRFLEAFNLFADMCRHGMVPD 138


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 354/564 (62%), Gaps = 8/564 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ +HA+ +K      + +   LI  Y+KC C++ A  +FD+M  ++++SWT +I+A
Sbjct: 229 LLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA 288

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q     EAL L  ++     + +     + L +C+G       K++H   +K    S 
Sbjct: 289 YAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SD 347

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + + + ++D+YA  G I+ A  +FE +  +DVVS T++IS Y   GL  EA+ +F  ++ 
Sbjct: 348 LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKE 407

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSL 311
             +  + +T  S+L+A + L+AL  GK++H  + R  F +    V  NSL+DMY+ CGSL
Sbjct: 408 TSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV--NSLVDMYACCGSL 465

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + +VF     ++++ W  M+  Y  HG G+  VELF++M E+ K+ PD +T+LA+L  
Sbjct: 466 ENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM-EDQKLIPDHITFLALLYA 524

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G+ + G  +  E + CK   EP  EHY C+VD+LGRA  + EA  F+K+M  EPTA
Sbjct: 525 CSHSGLINEGKRLL-ETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTA 583

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
            +  + LGACR+H N  +GE   Q+L++++P++ G+YV++SN++A++GRW+DV  VR  M
Sbjct: 584 EVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRM 643

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCV 550
           K   + K+PG SWIE+   +HTF   D+SHP   ++  K+ Q++ K  KE GYVP    V
Sbjct: 644 KGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLV 703

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L++V +E+K ++L GHSE+LA+ +GL+ T EG PIR+ KNLR+CVDCH F K VSK + R
Sbjct: 704 LHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFER 763

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++ +RD +RFHH  +G CSCGD+W
Sbjct: 764 ELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 219/384 (57%), Gaps = 9/384 (2%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NGQ  +AL    EM   G+          L AC +    + G  +HA ++K+     VY+
Sbjct: 90  NGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  + +   +S A ++FDE+ E++ ++W +MI+ ++Q     EAL  F  +  ++ 
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL 209

Query: 156 EPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           +P+E +  ++L + +G  G+ L GK+IH+  +K+  +S++ +G++L+DMY+K   +  A 
Sbjct: 210 KPDEVSLISILAA-SGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +  +D++S T +I+ YAQ     EA++L RK+Q +GM  + +   S L A SGL 
Sbjct: 269 LVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLR 328

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            L H K+VH + L+  + S +++QN +ID+Y+ CG++ Y+ R+F+++  + V+SW +M+ 
Sbjct: 329 CLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMIS 387

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            Y  +G+  E + +F LM+E + V+PDS+T +++LS  +     ++G  +   I   + G
Sbjct: 388 CYVHNGLANEALGVFYLMKETS-VEPDSITLVSILSAAASLSALNKGKEIHGFIF--RKG 444

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEA 418
           F  E      +VDM    G +  A
Sbjct: 445 FMLEGSTVNSLVDMYACCGSLENA 468



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 215/431 (49%), Gaps = 32/431 (7%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG+      +  +L AC     +  G  +H  +IK  Y   V++   L+  Y KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 109 LSDARKMFDEMRERN-VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           +  ARK+FD M ERN VVSW ++ISAYS      EAL LF  M ++    N +T    L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C  +   +LG +IH+ I+KSN    +YV ++L+ M+ + G++  A  +F+ L E+D ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             ++I+G+ Q GL  EA++ F  LQ   +  + V+  S+L A   L  L +GK++H++ +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  + S + + N+LIDMYSKC  + Y+  VFD M  + +ISW  ++  Y+++    E ++
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRGLAVFHEIVDCKDGFE 396
           L   ++ +  +  D++   + L  CS           HG    RGL+             
Sbjct: 301 LLRKVQTKG-MDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS------------- 346

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH---YNVDIGEFV 453
            ++     ++D+    G +  A    +++  +   +    +  +C VH    N  +G F 
Sbjct: 347 -DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI--SCYVHNGLANEALGVFY 403

Query: 454 GQRLMEIEPEN 464
             +   +EP++
Sbjct: 404 LMKETSVEPDS 414


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 354/604 (58%), Gaps = 35/604 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ A     +L  GQ +H  ++K  +   +++   LI FY+    L  A  +F ++ E++
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSW +MIS + Q     EAL LF RM   +  PN  T   VL++CA     E G+    
Sbjct: 197 IVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG---- 239
            I ++  + ++ + +++LDMY K G + +AR +F+ + E+D+VS T +I GYA++G    
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 240 ---------------------------LDEEAIELFRKLQV-EGMISNYVTYASVLTALS 271
                                        +EA+ +FR+LQ+ +    N VT AS L A +
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L A+  G  +H ++ +  I     +  SLIDMYSKCG L  +  VF ++  R V  W+A
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G + HG GR  ++LF+ M +E KVKP++VT+  +L  CSH G+ D G   F+++   
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKM-QETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPV 495

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  P  +HY C+VD+LGRAG + EA+E I+ MP  P+A++ G+LLGACR++ NV++ E
Sbjct: 496 Y-GVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAE 554

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
               RL+E +  N G YV+LSN+YA AG+W+ V+R+R+ MK   + K+PG S IE++ I+
Sbjct: 555 MACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGII 614

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE-QKEKVLLGHSEKL 570
           H F   D SHP+  E+ +K+ ++  + K  GYV D S +L  V+EE  KE  L  HSEKL
Sbjct: 615 HEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKL 674

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GLI      PIR++KNLR+C DCH+ AK +SK+Y R + LRD+ RFHH   G CSC
Sbjct: 675 AIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSC 734

Query: 631 GDYW 634
            DYW
Sbjct: 735 MDYW 738



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 198/391 (50%), Gaps = 39/391 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           L++ C N++ L+   ++HAHM++T   + PP   +       +    L  A K+FD++  
Sbjct: 36  LIDKCANKKHLK---QLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPR 92

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            N+ +W  +I A++      + L +FI+ML  S   PN +TF  V+ +         G+ 
Sbjct: 93  PNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQA 152

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH +++K++F S +++ +SL+  Y+  G +  A  VF  + E+D+VS  ++ISG+ Q G 
Sbjct: 153 IHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGS 212

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA++LF+++++E    N VT   VL+A +    L  G+    ++ R  I   ++L N+
Sbjct: 213 PEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNA 272

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK---------------------- 338
           ++DMY KCGSL  +RR+FD M E+ ++SW  M+ GY+K                      
Sbjct: 273 MLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAW 332

Query: 339 ---------HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
                    +G  +E + +F  ++     KP+ VT  + L+ C+  G  D G    H  +
Sbjct: 333 NALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG-GWIHVYI 391

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
             K G +        ++DM  + G + +ALE
Sbjct: 392 K-KQGIKLNFHITTSLIDMYSKCGHLEKALE 421


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/546 (42%), Positives = 353/546 (64%), Gaps = 17/546 (3%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V  RT +I  Y +   L +AR +FDEM  RNVVSWT MI+ Y Q      A  LF  M  
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM-- 310

Query: 153 SDTEPNEFTFATVL---TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
              E NE ++  +L   T+C G    E  +  +++ IKS     +   ++++  + + G 
Sbjct: 311 --PEKNEVSWTAMLKGYTNC-GRLD-EASELFNAMPIKS-----VVACNAMILCFGQNGE 361

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +AR VF+ + E+D  + +A+I  Y + GL+ +A+ELFR +Q EG+  N+ +  SVL+ 
Sbjct: 362 VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +GLA L HG+++H+ ++R +    V + + L+ MY KCG+L  +++VFD  + + V+ W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ GY++HG+G E + +F+ M   + + PD VT++ VLS CS+ G   +GL +F+ + 
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDM-HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM- 539

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           + K   E +IEHY C+VD+LGRAG++ EA++ I+ MP E  A I G+LLGACR H  +D+
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
            E   ++L+ +EP+NAG +++LSN+YAS GRW+DV  +R  M+++ V+K PG SWI +++
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEK 659

Query: 510 ILHTFHASDRS-HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            +H F   D S HP   E++  ++ LS   +EAGY PD S VL+DVDEE+K + L  HSE
Sbjct: 660 KVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSE 719

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ +GL+  P G PIRV+KNLR+C DCH   K ++KV GR++ LRD NRFHH  +G+C
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 780 SCRDYW 785



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 176/392 (44%), Gaps = 82/392 (20%)

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           R  LI  Y++   +  AR +FDEMR++N++SW ++++ Y Q     EA N+F +M    +
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----S 156

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           E N  ++                                   + L+  Y   G I+EAR 
Sbjct: 157 ERNTISW-----------------------------------NGLVSGYINNGMINEARE 181

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ +PER+VVS TA++ GY + G+  EA  LF ++  +    N V++  +L  L     
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK----NVVSWTVMLGGL----- 232

Query: 276 LGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           L  G+   +  L   +P   VV + ++I  Y + G L  +R +FD M  R V+SW  M+ 
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH-----EIV 389
           GY ++       +LF +M E+N+     V++ A+L G ++ G  D    +F+      +V
Sbjct: 293 GYVQNQQVDIARKLFEVMPEKNE-----VSWTAMLKGYTNCGRLDEASELFNAMPIKSVV 347

Query: 390 DC--------KDGFEPEIEH------------YGCVVDMLGRAGRVGEALEFIKNMPFE- 428
            C        ++G  P+               +  ++ +  R G   +ALE  + M  E 
Sbjct: 348 ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG 407

Query: 429 --PTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             P    L S+L  C    N+D G  +  +L+
Sbjct: 408 IRPNFPSLISVLSVCAGLANLDHGREIHAQLV 439



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+   F    ++L+ C     L  G+ +HA ++++ +   VY+ + L+  Y KC  
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ A+++FD    ++VV W ++I+ Y+Q     EAL +F  M  S   P++ TF  VL++
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 169 CAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVV 226
           C+     + G +I +S+  K   E  I   + ++D+  +AG+++EA  + E +P E D +
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 227 SCTAIISG 234
              A++  
Sbjct: 583 IWGALLGA 590



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 38/234 (16%)

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           RF   ++++ +NSLI  YS+ G +  +R VFD M ++ +ISWN+++ GY ++   +E   
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD-------------CKDG 394
           +F+ M E N     ++++  ++SG  + GM +    VF  + +              K+G
Sbjct: 151 MFDKMSERN-----TISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEG 205

Query: 395 FEPEIE------------HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
              E E             +  ++  L + GR+ EA      MP +        + G C+
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 443 VHYNVDIGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           V      G  V  R++  E+   N  ++  +   Y    + +   ++ E+M EK
Sbjct: 266 V------GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK 313


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/581 (39%), Positives = 357/581 (61%), Gaps = 3/581 (0%)

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
            E  + +   LL +    R+LR G ++HAH++K   +    +   LI  Y+K +    + 
Sbjct: 21  FEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSL 80

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++FDE  +++  +W+++ISA++Q      AL  F RML     P++  + +   +C    
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             ++GK +H L +K+ +   ++VGSSL+DMYAK G I +AR +F+ +PER+VVS + +I 
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIY 200

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GYAQL    EA+ LF++  +E +  N  T++SV+   S    L  GK +H   L+    S
Sbjct: 201 GYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDS 260

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
              + ++LI +YSKCG +  + +VFD +  R +  WN+ML+  ++H   + V  LF  M 
Sbjct: 261 SSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMG 320

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
               +KP+ + +L+VL  CSH G+ ++G   F  + D   G EPE EHY  +VD+LGRAG
Sbjct: 321 NVG-MKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDY--GIEPETEHYASLVDLLGRAG 377

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
           ++ EA+  IK MP  PT ++ G+LL  CR+H + ++  FV  R++E++  ++G +V+LSN
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSN 437

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQ 533
            YA+AGR+E+  R+R++++++ V K+ G SW+E    +HTF A DRSH    E+  K+++
Sbjct: 438 AYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEE 497

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L  + ++AGYV D S VL  VD E+K + +  HSE+LA+ FGLI  P G PIRV+KNLR+
Sbjct: 498 LEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRV 557

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH   KF+SK  GR + +RD NRFH   +G CSCGDYW
Sbjct: 558 CGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 346/572 (60%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL AC+ +  L   + +H + ++  ++    +    I  Y KC  L  A  +F  M  +
Sbjct: 421 NLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK 480

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V SW A+I  ++Q     +AL+ +  M R    P++F+  ++L +C      + GK+IH
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH 540

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++++  E + +V  SLL +Y    +    R  FE + +++ V   A++SGY+Q  L  
Sbjct: 541 GFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPN 600

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LFR++  +G+  + +  AS+L A S L+ALG GK+VH   L+  +     +  SL+
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLM 660

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+K G L +S+R+F+ ++ + V SWN M+ G+  HG G + VELF  M+  +K +PD 
Sbjct: 661 DMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDK-QPDR 719

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+L VL  C H G+   GL    ++       EPE+EHY CV+DMLGRAGR+ EAL FI
Sbjct: 720 FTFLGVLQACCHAGLVSEGLNYLAQMQTLYK-LEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MP EP A I  SLL +   + ++++GE   ++L+ +E   A +Y++LSNLYA+AG+W+
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  VR+ MK+ ++ KD G SWIEL   +++F A + S+P  +E+     +L  +  E G
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIG 898

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y PD SCVL++++E +K K+L GHSEK+A+ FG + T EG  +R+ KNLRIC DCHN AK
Sbjct: 899 YTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAK 958

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++SK   R++ +RD  RFHH  +G CSCGDYW
Sbjct: 959 YISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 189/357 (52%), Gaps = 18/357 (5%)

Query: 31  QNLKTLCSNGQLTKALIEM-------ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAH 83
           + +  LC  G L  AL  +       A   L  R E    LL  C   + +  G+++   
Sbjct: 73  EEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEM 132

Query: 84  M-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
           + + + +     L TRLI  Y+ C    ++R +FD +  +N+  W A++S Y +     E
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 143 ALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           A++ F+ ++  ++ +P+ FTF  ++ +C G     LGK +H + +K      ++VG++++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEGMISN 259
            +Y K G + EA  +F+ +PE++++S  ++I G+++ G   EA   FR L    +G+I +
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             T  ++L   SG   +  G  +H   ++  +   +++ N+LIDMYSKCG L+ +  +F 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMR----EENKVKPDSVTYLAVLSGC 372
            +  ++V+SWN+M+  YS+ G    V E F+L+R    EE  ++ + VT L +L  C
Sbjct: 373 KIENKSVVSWNSMIGAYSREGF---VFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 169/325 (52%), Gaps = 5/325 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  L+ AC  +  +  G+ VH   +K      +++   +I  Y KC  L +A ++FD+M 
Sbjct: 213 FPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP 272

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELG 178
           E+N++SW ++I  +S+     EA   F  +L S     P+  T  T+L  C+G    ++G
Sbjct: 273 EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG 332

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             IH + +K      + V ++L+DMY+K G + EA  +F  +  + VVS  ++I  Y++ 
Sbjct: 333 MVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392

Query: 239 GLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           G   E  +L RK+ +E   M  N VT  ++L A    + L   + +H + LR       +
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL 452

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+ I  Y+KCGSL ++  VF  M+ ++V SWNA++ G++++G   + ++ +  M    
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG 512

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRG 381
            + PD  + +++L  C   G+   G
Sbjct: 513 -ILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 143/293 (48%), Gaps = 12/293 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   KAL    EM  LG+        +LL AC     L+ G+ +H  +++       ++
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y  C      R  F+ M ++N V W AM+S YSQ     EAL+LF +ML    
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP+E   A++L +C+      LGK++H   +K++     +V  SL+DMYAK+G +  ++ 
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQR 674

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGL 273
           +F  L  ++V S   +I+G+   G   +A+ELF  ++      +  T+  VL A   +GL
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGL 734

Query: 274 AA--LGHGKQVHS-HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            +  L +  Q+ + + L  E+  Y      +IDM  + G L  +    + M E
Sbjct: 735 VSEGLNYLAQMQTLYKLEPELEHYAC----VIDMLGRAGRLNEALNFINEMPE 783



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 153/317 (48%), Gaps = 12/317 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFE---ALNLFIRMLRS----DTEPNEFTFAT 164
           AR    + R  N VS  +++   S+   + +   AL+   R  ++    D    +     
Sbjct: 53  ARTQSHQSRSVNPVSQLSLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGM 112

Query: 165 VLTSCAGAFGFELGKQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +L  C      E+G+++  ++ + S F     + + L+ MY+  G   E+R VF+ L  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           ++    A++SGY +  L +EAI  F +L  V     +  T+  ++ A +G   +  GK V
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H   ++  +   + + N++I +Y KCG L  +  +FD M E+ +ISWN+++ G+S++G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 343 REVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            E    F +L+   + + PD  T + +L  CS  G  D G+ +    V  K G   E+  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV--KLGLVHELMV 350

Query: 402 YGCVVDMLGRAGRVGEA 418
              ++DM  + G + EA
Sbjct: 351 CNALIDMYSKCGCLSEA 367



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   LI MYS CG    SR VFD +  + +  WNA++ GY ++ +  E +  F  +   
Sbjct: 144 VLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV 203

Query: 356 NKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            + +PD+ T+  ++  C+     H G    G+AV       K G   ++     ++ + G
Sbjct: 204 TEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAV-------KMGLIMDLFVGNAMIALYG 256

Query: 411 RAGRVGEALEFIKNMP 426
           + G + EA+E    MP
Sbjct: 257 KCGFLDEAVELFDKMP 272


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/546 (42%), Positives = 353/546 (64%), Gaps = 17/546 (3%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V  RT +I  Y +   L +AR +FDEM  RNVVSWT MI+ Y Q      A  LF  M  
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM-- 310

Query: 153 SDTEPNEFTFATVL---TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
              E NE ++  +L   T+C G    E  +  +++ IKS     +   ++++  + + G 
Sbjct: 311 --PEKNEVSWTAMLKGYTNC-GRLD-EASELFNAMPIKS-----VVACNAMILCFGQNGE 361

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +AR VF+ + E+D  + +A+I  Y + GL+ +A+ELFR +Q EG+  N+ +  SVL+ 
Sbjct: 362 VPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSV 421

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +GLA L HG+++H+ ++R +    V + + L+ MY KCG+L  +++VFD  + + V+ W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ GY++HG+G E + +F+ M   + + PD VT++ VLS CS+ G   +GL +F+ + 
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDM-HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM- 539

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           + K   E +IEHY C+VD+LGRAG++ EA++ I+ MP E  A I G+LLGACR H  +D+
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
            E   ++L+ +EP+NAG +++LSN+YAS GRW+DV  +R  M+++ V+K PG SWI +++
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEK 659

Query: 510 ILHTFHASDRS-HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            +H F   D S HP   E++  ++ LS   +EAGY PD S VL+DVDEE+K + L  HSE
Sbjct: 660 KVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSE 719

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ +GL+  P G PIRV+KNLR+C DCH   K ++KV GR++ LRD NRFHH  +G+C
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 780 SCRDYW 785



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 176/392 (44%), Gaps = 82/392 (20%)

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           R  LI  Y++   +  AR +FDEMR++N++SW ++++ Y Q     EA N+F +M    +
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----S 156

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           E N  ++                                   + L+  Y   G I+EAR 
Sbjct: 157 ERNTISW-----------------------------------NGLVSGYINNGMINEARE 181

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ +PER+VVS TA++ GY + G+  EA  LF ++  +    N V++  +L  L     
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK----NVVSWTVMLGGL----- 232

Query: 276 LGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           L  G+   +  L   +P   VV + ++I  Y + G L  +R +FD M  R V+SW  M+ 
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH-----EIV 389
           GY ++       +LF +M E+N+     V++ A+L G ++ G  D    +F+      +V
Sbjct: 293 GYVQNQQVDIARKLFEVMPEKNE-----VSWTAMLKGYTNCGRLDEASELFNAMPIKSVV 347

Query: 390 DC--------KDGFEPEIEH------------YGCVVDMLGRAGRVGEALEFIKNMPFE- 428
            C        ++G  P+               +  ++ +  R G   +ALE  + M  E 
Sbjct: 348 ACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG 407

Query: 429 --PTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             P    L S+L  C    N+D G  +  +L+
Sbjct: 408 IRPNFPSLISVLSVCAGLANLDHGREIHAQLV 439



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+   F    ++L+ C     L  G+ +HA ++++ +   VY+ + L+  Y KC  
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ A+++FD    ++VV W ++I+ Y+Q     EAL +F  M  S   P++ TF  VL++
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 169 CAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVV 226
           C+     + G +I +S+  K   E  I   + ++D+  +AG+++EA  + E +P E D +
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 227 SCTAIISG 234
              A++  
Sbjct: 583 IWGALLGA 590



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 38/234 (16%)

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           RF   ++++ +NSLI  YS+ G +  +R VFD M ++ +ISWN+++ GY ++   +E   
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD-------------CKDG 394
           +F+ M E N     ++++  ++SG  + GM +    VF  + +              K+G
Sbjct: 151 MFDKMSERN-----TISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEG 205

Query: 395 FEPEIE------------HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
              E E             +  ++  L + GR+ EA      MP +        + G C+
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQ 265

Query: 443 VHYNVDIGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           V      G  V  R++  E+   N  ++  +   Y    + +   ++ E+M EK
Sbjct: 266 V------GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK 313


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 364/604 (60%), Gaps = 35/604 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L+ A     +L  GQ +H   IK+     V++   LI  Y  C  L  A K+F  ++E++
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSW +MI+ + QK    +AL LF +M   D + +  T   VL++CA     E G+++ S
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCS 258

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL----------------------- 220
            I ++    ++ + +++LDMY K G I +A+ +F+ +                       
Sbjct: 259 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 318

Query: 221 --------PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALS 271
                   P++D+V+  A+IS Y Q G   EA+ +F +LQ++  I  N +T  S L+A +
Sbjct: 319 AREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACA 378

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            + AL  G+ +HS++ +  I     + ++LI MYSKCG L  +R VF+++ +R V  W+A
Sbjct: 379 QVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSA 438

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G + HG G E V++F  M+E N VKP+ VT+  V   CSH G+ D   ++F+++ + 
Sbjct: 439 MIGGLAMHGCGSEAVDMFYKMQEAN-VKPNGVTFTNVFCACSHTGLVDEAESLFYKM-ES 496

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE +HY C+VD+LGR+G + +A++FI+ MP  P+ ++ G+LLGAC++H N+ + E
Sbjct: 497 SYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAE 556

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
               RL+E+EP N G +V+LSN+YA +G+W++V+ +R+ M+   + K+PG S IE+D ++
Sbjct: 557 MACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMI 616

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLLGHSEKL 570
           H F + D +HPM E++  K+ ++  K K  GY P+MS VL  ++EE+ KE+ L  HSEKL
Sbjct: 617 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKL 676

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GLI T     IRVIKNLR+C DCH  AK +S++Y R++ +RD+ RFHH   G CSC
Sbjct: 677 AICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSC 736

Query: 631 GDYW 634
            D+W
Sbjct: 737 NDFW 740



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 199/376 (52%), Gaps = 28/376 (7%)

Query: 17  TQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           T Q L++P  P N  N     +N + ++  I               +L++ C + R L+ 
Sbjct: 6   TAQPLSLPRHP-NFSNPNQPTTNNERSRHTI---------------SLIDRCSSLRQLK- 48

Query: 77  GQRVHAHMIKTCYRPPVYLRTRL--IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
             + HAHMI+T      Y  ++L  I   +    L  ARK+FDE+ + N  +W  +I AY
Sbjct: 49  --QTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAY 106

Query: 135 SQKAHSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           +       ++  F+ M+ S+++  PN++TF  ++ + A      LG+ +H + IKS   S
Sbjct: 107 ASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGS 166

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            ++V +SL+  Y   G +  A  VF  + E+DVVS  ++I+G+ Q G  ++A+ELF+K++
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            E + +++VT   VL+A + +  L  G++V S++    +   + L N+++DMY+KCGS+ 
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            ++R+FD M E+  ++W  ML GY+         E+ N M      K D V + A++S  
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP-----KKDIVAWNALISAY 341

Query: 373 SHGGMEDRGLAVFHEI 388
              G  +  L VFHE+
Sbjct: 342 EQNGKPNEALLVFHEL 357


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 350/578 (60%), Gaps = 38/578 (6%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           F  +  +L AC    TL  G+++H    K  ++  V++   LI  Y++      AR +FD
Sbjct: 118 FYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 174

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           +M  R++ SW AMIS   Q  ++ +AL++   M                           
Sbjct: 175 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG----------------------- 211

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
                   IK NF + + +    +DMYAK G +  A  VFE +P +DV+S   +I+GYAQ
Sbjct: 212 --------IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 263

Query: 238 LGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
            GL  EAIE+++ ++  + +I N  T+ S+L A + + AL  G ++H  V++  +   V 
Sbjct: 264 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF 323

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +   LID+Y KCG L  +  +F  + + + ++WNA++  +  HG   + ++LF  M +E 
Sbjct: 324 VATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG 383

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            VKPD VT++++LS CSH G  + G   F  + +   G +P ++HYGC+VD+LGRAG + 
Sbjct: 384 -VKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEY--GIKPSLKHYGCMVDLLGRAGYLE 440

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
            A +FIK+MP +P A+I G+LLGACR+H N+++G+F   RL E++ +N G YV+LSN+YA
Sbjct: 441 MAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYA 500

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           + G+WE V +VR L +E+ + K PG S IE+++ +  F+  ++SHP  +E+  +++ L+ 
Sbjct: 501 NVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTA 560

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K K  GY+PD S VL DV+E++KE +L  HSE+LA+ FG+I TP  +PIR+ KNLR+C D
Sbjct: 561 KMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGD 620

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CHN  KF+S++  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 621 CHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 188/354 (53%), Gaps = 37/354 (10%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA ++       +++ TRL+  Y     +S +R  FD++ +++V +W +MISAY    H
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 140 SFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
             EA+  F ++L  S+  P+ +TF  VL +C        G++IH    K  F+ +++V +
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 154

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL+ MY++ G    AR +F+ +P RD+ S  A+ISG  Q G   +A+++  ++++EG+  
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N+VT  S+L                        P +V       DMY+K G L  + +VF
Sbjct: 215 NFVTVVSIL------------------------PVFV-------DMYAKLGLLDSAHKVF 243

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           + +  + VISWN ++ GY+++G+  E +E++ +M E  ++ P+  T++++L   +H G  
Sbjct: 244 EIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGAL 303

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
            +G+ +   ++  K     ++    C++D+ G+ GR+ +A+     +P E +  
Sbjct: 304 QQGMKIHGRVI--KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 355



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 146/308 (47%), Gaps = 34/308 (11%)

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
             K +H+L++ +     I++ + L+++YA  G +  +R  F+ +P++DV +  ++IS Y 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 237 QLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
             G   EAI  F +L +   I  ++ T+  VL A   L     G+++H    +      V
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNV 150

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +  SLI MYS+ G    +R +FD+M  R + SWNAM+ G  ++G   + +++ + MR E
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 356 NKVKPDSVTYLAVL----SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
             +K + VT +++L       +  G+ D    VF EI+  KD     +  +  ++    +
Sbjct: 211 G-IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVF-EIIPVKD-----VISWNTLITGYAQ 263

Query: 412 AGRVGEALEFIKNM--------------PFEPTAAILGSLLGACRVH-----YNVDIGEF 452
            G   EA+E  K M                 P  A +G+L    ++H      N+ +  F
Sbjct: 264 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF 323

Query: 453 VGQRLMEI 460
           V   L+++
Sbjct: 324 VATCLIDV 331


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 341/573 (59%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y +   L  AR+  D M E+ VV+W AMIS Y       EAL +F +M     +
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHE 212
            +EFT+ +VL++CA A  F  GKQ+H+ I+++    + +  + V ++L  +Y K G++ E
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 213 ARGVFECLPERDVVSCTAIISGY-------------------------------AQLGLD 241
           AR VF  +P +D+VS  AI+SGY                               AQ G  
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EE+++LF +++ EG       +A  + A + LAAL HG+Q+H+ ++R    S +   N+L
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MY+KCG +  +  +F  M     +SWNAM+    +HG G + +ELF LM +E+ + PD
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKED-ILPD 527

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+L VLS CSH G+ + G   F  +     G  P  +HY  ++D+L RAG+  EA + 
Sbjct: 528 RITFLTVLSTCSHAGLVEEGHRYFKSMSGLY-GICPGEDHYARMIDLLCRAGKFSEAKDM 586

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+ MP EP   I  +LL  CR+H N+D+G    +RL E+ P++ G YV+LSN+YA+ GRW
Sbjct: 587 IETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRW 646

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           +DV +VR+LM++K V K+PG SWIE++  +H F   D  HP  + +   +++L +K ++ 
Sbjct: 647 DDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKL 706

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD   VL+D++ EQKE VL  HSEKLA+ FGL+  P GA +RV KNLRIC DCHN  
Sbjct: 707 GYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAF 766

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SKV  R++ +RD  RFHH   G CSCG+YW
Sbjct: 767 KFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 189/418 (45%), Gaps = 87/418 (20%)

Query: 60  EYDTLLNACV--NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           +Y   L  C   N  +    + VHAHMI + ++P  Y+  RLI  Y K   L  A  +FD
Sbjct: 15  QYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFD 74

Query: 118 EMRE---------------------------------RNVVSWTAMISAYSQKAHSFEAL 144
           E+R+                                 R+ V + AMI+ YS     F A+
Sbjct: 75  EIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAI 134

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDM 203
            LF  +LR+   P+ FTF +VL + A     E   +QIH  ++KS       V ++LL +
Sbjct: 135 ELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSV 194

Query: 204 YAKAG---------RIHEARGVFECLPERD------------------------------ 224
           + K            +  AR +F+ + ERD                              
Sbjct: 195 FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEK 254

Query: 225 -VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            VV+  A+ISGY   G   EA+E+FRK+ + G+  +  TY SVL+A +      HGKQVH
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVH 314

Query: 284 SHVLRFEI-PSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           +++LR E  PS    + + N+L  +Y KCG +  +R+VF+ M  + ++SWNA+L GY   
Sbjct: 315 AYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNA 374

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           G   E    F  M E N      +T+  ++SG +  G  +  L +F+ +    +GFEP
Sbjct: 375 GRIDEAKSFFEEMPERNL-----LTWTVMISGLAQNGFGEESLKLFNRMK--SEGFEP 425



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 168/351 (47%), Gaps = 43/351 (12%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP----PVYLRTRLIVFY 103
           +M  LG++     Y ++L+AC N      G++VHA++++T  RP     + +   L   Y
Sbjct: 281 KMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLY 340

Query: 104 NKCECLSDARKMFD-------------------------------EMRERNVVSWTAMIS 132
            KC  + +AR++F+                               EM ERN+++WT MIS
Sbjct: 341 WKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMIS 400

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
             +Q     E+L LF RM     EP ++ FA  + +CA       G+Q+H+ +++  F+S
Sbjct: 401 GLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDS 460

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            +  G++L+ MYAK G +  A  +F  +P  D VS  A+I+   Q G   +A+ELF  + 
Sbjct: 461 SLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELML 520

Query: 253 VEGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
            E ++ + +T+ +VL+  S  GL   GH +   S    + I         +ID+  + G 
Sbjct: 521 KEDILPDRITFLTVLSTCSHAGLVEEGH-RYFKSMSGLYGICPGEDHYARMIDLLCRAGK 579

Query: 311 LTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE-LFNLMREEN 356
            + ++ + + M  E     W A+L G   HG   +G +  E LF LM + +
Sbjct: 580 FSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 17/126 (13%)

Query: 279 GKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
            + VH+H++   F+   Y++  N LID+Y K   L  +  +FD + +  +++   ++  +
Sbjct: 34  ARTVHAHMIASGFKPRGYIL--NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAH 91

Query: 337 SKHGMGREVVELFNLMREENKVKP----DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           S  G         NL RE     P    D+V Y A+++G SH       + +F +++  +
Sbjct: 92  SSAGNS-------NLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLL--R 142

Query: 393 DGFEPE 398
           +GF P+
Sbjct: 143 NGFRPD 148


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/542 (39%), Positives = 340/542 (62%), Gaps = 9/542 (1%)

Query: 100 IVFYN-------KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +V YN       +C+ + +AR +F+ M +R+ ++WT M++  +Q     EAL++F RM  
Sbjct: 215 VVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRA 274

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
                +++TF ++LT+C      E GKQIH+  I++ ++ +I+VGS+L+DMY+K   I  
Sbjct: 275 EGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRL 334

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VF  +  ++++S TA+I GY Q G  EEA+ +F ++Q +G+  N  T  SV+++ + 
Sbjct: 335 AEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCAN 394

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA+L  G Q H   L   +  Y+ + ++L+ +Y KCGS+  + R+FD M     +S+ A+
Sbjct: 395 LASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTAL 454

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++ G  +E ++LF  M  +  VKP+ VT++ VLS CS  G+ ++G + FH +    
Sbjct: 455 VSGYAQFGKAKETIDLFEKMLLKG-VKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQ-D 512

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
            G     +HY C++D+  R+GR+ EA EFI+ MP  P A    +LL ACR+  +++IG++
Sbjct: 513 HGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKW 572

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             + L++ +P+N  +YV+L +++AS G W +V  +R  M+++ V K+PG SWI+    +H
Sbjct: 573 AAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVH 632

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D+SHP    +  K++ L+ K  E GY PD+S VL+DV + +K  +L  HSEKLA+
Sbjct: 633 IFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAI 692

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGLI  PE  PIRV+KNLR+CVDCHN  KF+SK+ GR + +RD  RFH    G CSCGD
Sbjct: 693 AFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGD 752

Query: 633 YW 634
           +W
Sbjct: 753 FW 754



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 157/308 (50%), Gaps = 15/308 (4%)

Query: 36  LCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           L  NG  ++AL     M   G+ +    + ++L AC        G+++HA+ I+T Y   
Sbjct: 256 LTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGN 315

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +++ + L+  Y+KC  +  A  +F  M  +N++SWTAMI  Y Q     EA+ +F  M  
Sbjct: 316 IFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQT 375

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +PN+FT  +V++SCA     E G Q H + + S    +I V S+L+ +Y K G I +
Sbjct: 376 DGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIED 435

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL-- 270
           A  +F+ +P  D VS TA++SGYAQ G  +E I+LF K+ ++G+  N VT+  VL+A   
Sbjct: 436 AHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSR 495

Query: 271 SGLAALG----HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RT 325
           SGL   G    H  Q   H +      Y      +ID+YS+ G L  +      M     
Sbjct: 496 SGLVEKGCSYFHSMQ-QDHGIVLLDDHY----TCMIDLYSRSGRLKEAEEFIRQMPRCPD 550

Query: 326 VISWNAML 333
            I W  +L
Sbjct: 551 AIGWATLL 558



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 30/246 (12%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P  +    +LT+ A +    L +++   +   N    ++  ++LL   A A  + +   +
Sbjct: 43  PPTYVLNHLLTAYARSGRLPLARRLFDAMPDPN----LFTRNALLSALAHARLLPDMDRL 98

Query: 217 FECLPERDVVSCTAIISGYAQLG------------LDEEAIELFRKLQVEG--MISNYVT 262
           F  +P+RD VS  A+I+G++  G            L EEA+       V+G  +  + +T
Sbjct: 99  FASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAV-------VDGARVRPSRIT 151

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
            + ++ A S L     G+QVH  ++R    +Y    + L+DMY+K G +  ++RVFD M 
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMV 211

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + V+ +N M+ G  +  M  E   +F  M     V  DS+T+  +++G +  G++   L
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAM-----VDRDSITWTTMVTGLTQNGLQSEAL 266

Query: 383 AVFHEI 388
            VF  +
Sbjct: 267 DVFRRM 272



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 282 VHSHVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           VH  VLR      P+YV+  N L+  Y++ G L  +RR+FD M +  + + NA+L   + 
Sbjct: 31  VHCLVLRTLPHPPPTYVL--NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAH 88

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
             +  ++  LF  M +      D+V+Y A+++G S
Sbjct: 89  ARLLPDMDRLFASMPQR-----DAVSYNALIAGFS 118


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 339/576 (58%), Gaps = 36/576 (6%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V     +I  Y +   + +A+++FD M  RN +SW  MI+ Y+Q   S EAL+L   +
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA--- 207
            R+   P+  +  +   +C+     E G+Q+HSL +K+  + + YV ++L+ MY K    
Sbjct: 410 HRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNM 469

Query: 208 ----------------------------GRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
                                         + +AR +F+ +  RDVVS T IIS YAQ  
Sbjct: 470 EYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAE 529

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             +EA+E F+ +  E    N      +L+   GL +   G+Q+H+  ++  + S +++ N
Sbjct: 530 RGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVAN 589

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+ MY KCG    S +VFD+M ER + +WN  + G ++HG+GRE ++++  M E   V 
Sbjct: 590 ALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHM-ESVGVL 647

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEA 418
           P+ VT++ +L+ CSH G+ D G   F  +   +D G  P +EHY C+VD+LGR G V  A
Sbjct: 648 PNEVTFVGLLNACSHAGLVDEGWQFFKSM--SRDYGLTPLLEHYACMVDLLGRTGDVQGA 705

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            +FI +MP EP   I  +LLGAC++H N +IG    ++L   EP NAGNYV+LSN+Y+S 
Sbjct: 706 EKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSL 765

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G W +V  +R++MK++ V+K+PG SW+++   +H+F   D+ H   EE+   ++ L    
Sbjct: 766 GMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLL 825

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           +  GYVPD   VL+D+DEEQKE  LL HSEKLA+ +GL+ TP+G PI+++KNLRIC DCH
Sbjct: 826 RGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCH 885

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            F KFVS V  R + +RD NRFHH   G+CSCGD+W
Sbjct: 886 TFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER---- 122
           AC +   L  G++VH+  +K   +   Y+   LI  Y KC  +   R++F+ MR +    
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 123 ---------------------------NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
                                      +VVSWT +ISAY+Q     EA+  F  ML    
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +PN      +L+ C G    +LG+QIH++ IK   +S + V ++L+ MY K G   ++  
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHK 605

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ + ERD+ +    I+G AQ GL  EAI+++  ++  G++ N VT+  +L A S    
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 276 LGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR-VFDNMSERTVISWNAML 333
           +  G Q    + R + +   +     ++D+  + G +  + + ++D   E   + W+A+L
Sbjct: 666 VDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725

Query: 334 VGYSKHG---MGREVVE 347
                H    +GR   E
Sbjct: 726 GACKIHKNAEIGRRAAE 742



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 167/365 (45%), Gaps = 49/365 (13%)

Query: 84  MIKTCYRPPVYLRTRLIVFYNK-CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
           ++KT +   V + T ++  Y +    L  A K FD M ERN  +W+ MI+A S       
Sbjct: 249 VLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDA 308

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG-SSLL 201
           A+ ++ R     + P++    T L  C        G+   + I+       I V  ++++
Sbjct: 309 AIAVYGRD-PVKSIPSQTALLTGLARC--------GRITEARILFEQIPDPIVVSWNAMI 359

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
             Y + G + EA+ +F+ +P R+ +S   +I+GYAQ G  EEA++L + L   GM+ +  
Sbjct: 360 TGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLS 419

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTY------ 313
           +  S   A S + AL  G+QVHS  ++   +  SYV   N+LI MY KC ++ Y      
Sbjct: 420 SLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVC--NALISMYGKCRNMEYVRQVFN 477

Query: 314 -------------------------SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                                    +R +FDNM  R V+SW  ++  Y++   G E VE 
Sbjct: 478 RMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEF 537

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M  E++ KP+S     +LS C  GG+    L      V  K G + E+     ++ M
Sbjct: 538 FKTMLHEHE-KPNSPILTILLSVC--GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSM 594

Query: 409 LGRAG 413
             + G
Sbjct: 595 YFKCG 599



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 51/344 (14%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T L+  Y +   + DAR++FD M ERN V+W AM+S Y Q      A  LF  M   D  
Sbjct: 99  TILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRD-- 156

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
                                                +   +S++  Y  + ++ +A  +
Sbjct: 157 -------------------------------------VTSWNSMVTGYCHSRQMVDAWNL 179

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +P+R++V+ T +ISGY ++    +  ++FR +  EG   +   +ASVL+A++GL  L
Sbjct: 180 FKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDL 239

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-LTYSRRVFDNMSERTVISWNAMLVG 335
           G  + +   VL+    S VV+  S++++Y++  S L  + + FD M ER   +W+ M+  
Sbjct: 240 GVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA 299

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
            S  G     + ++   R+  K  P      A+L+G +  G       +F +I D     
Sbjct: 300 LSHGGRIDAAIAVYG--RDPVKSIPSQT---ALLTGLARCGRITEARILFEQIPD----- 349

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            P +  +  ++    + G V EA E    MPF  T +  G + G
Sbjct: 350 -PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 17/203 (8%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           A+ GR+ EAR VF+ +P RD+++  ++IS Y   G+ E+A  LF     + +    V  A
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF-----DAISGGNVRTA 98

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           ++L  LSG A L  G+ + +  +   +P    V  N+++  Y + G +T +RR+FD M  
Sbjct: 99  TIL--LSGYARL--GRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R V SWN+M+ GY      R++V+ +NL ++    + + VT+  ++SG        +G  
Sbjct: 155 RDVTSWNSMVTGYCH---SRQMVDAWNLFKQ--MPQRNLVTWTVMISGYVRIEQHGKGWD 209

Query: 384 VFHEIVDCKDGFEPEIEHYGCVV 406
           +F  +    +G  P+  ++  V+
Sbjct: 210 IFRMM--HHEGASPDQSNFASVL 230



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL+ C    + + GQ++H   IK      + +   L+  Y KC C +D+ K+FD M ER+
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEERD 614

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IH 182
           + +W   I+  +Q     EA+ ++  M      PNE TF  +L +C+ A   + G Q   
Sbjct: 615 IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFK 674

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAII 232
           S+         +   + ++D+  + G +  A      +P E D V  +A++
Sbjct: 675 SMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 342/576 (59%), Gaps = 9/576 (1%)

Query: 63   TLLNACVNQRTLRGG----QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
            ++L AC    +L GG     ++HA  +K       ++ T LI  Y+K   + +A  +F  
Sbjct: 1012 SVLRAC---SSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVN 1068

Query: 119  MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
                ++ SW AM+  Y       +AL L+I M  S    N+ T A    +  G  G + G
Sbjct: 1069 QDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQG 1128

Query: 179  KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            KQI ++++K  F   ++V S +LDMY K G +  AR +F  +P  D V+ T +ISG  + 
Sbjct: 1129 KQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVEN 1188

Query: 239  GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            G +E A+  +  +++  +  +  T+A+++ A S L AL  G+Q+H++ ++        + 
Sbjct: 1189 GQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVM 1248

Query: 299  NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
             SL+DMY+KCG++  +R +F   +   + SWNAM+VG ++HG   E ++ F  M+    V
Sbjct: 1249 TSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRG-V 1307

Query: 359  KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             PD VT++ VLS CSH G+       F+ +     G EPEIEHY C+VD L RAGR+ EA
Sbjct: 1308 TPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIY-GIEPEIEHYSCLVDALSRAGRIREA 1366

Query: 419  LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
             + I +MPFE +A++  +LL ACRV  + + G+ V ++L+ +EP ++  YV+LSN+YA+A
Sbjct: 1367 EKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAA 1426

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
             +WE+V   R +M++  V KDPG SW++L   +H F A DRSH   + +  KV+ +  + 
Sbjct: 1427 NQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1486

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            +E GY+PD    L DV+EE KE  L  HSEKLA+ +GL+ TP    +RVIKNLR+C DCH
Sbjct: 1487 REEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1546

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            N  K++SKV+ R+V LRD NRFHH   G CSCGDYW
Sbjct: 1547 NAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 187/363 (51%), Gaps = 8/363 (2%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            +L+       L  G+++H  ++++     V +   LI  Y K   +S AR +F +M E +
Sbjct: 912  MLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVD 971

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGKQIH 182
            +VSW  MIS  +       ++ +F+ +LR    P++FT A+VL +C+    G  L  QIH
Sbjct: 972  LVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIH 1031

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            +  +K+      +V ++L+D+Y+K+G++ EA  +F      D+ S  A++ GY   G   
Sbjct: 1032 ACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFP 1091

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNS 300
            +A+ L+  +Q  G  +N +T A+   A  GL  L  GKQ+ + V++  F +  +V+  + 
Sbjct: 1092 KALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVI--SG 1149

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            ++DMY KCG +  +RR+F+ +     ++W  M+ G  ++G     +  ++ MR  +KV+P
Sbjct: 1150 VLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMR-LSKVQP 1208

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            D  T+  ++  CS     ++G  +    V     F+P +     +VDM  + G + +A  
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARG 1266

Query: 421  FIK 423
              K
Sbjct: 1267 LFK 1269



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 5/320 (1%)

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            +V++W   +S + Q+  ++EA++ F+ M+ S    +  TF  +L+  AG    ELGKQIH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++++S  +  + VG+ L++MY K G +  AR VF  + E D+VS   +ISG A  GL+E
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH-GKQVHSHVLRFEIPSYVVLQNSL 301
             ++ +F  L   G++ +  T ASVL A S L    H   Q+H+  ++  +     +  +L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 302  IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
            ID+YSK G +  +  +F N     + SWNAM+ GY   G   + + L+ LM+E  + + +
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE-RAN 1108

Query: 362  SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             +T          GG+         + V  K GF  ++     V+DM  + G +  A   
Sbjct: 1109 QITLANAAKAA--GGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRI 1166

Query: 422  IKNMPFEPTAAILGSLLGAC 441
               +P  P      +++  C
Sbjct: 1167 FNEIP-SPDDVAWTTMISGC 1185



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 169/366 (46%), Gaps = 40/366 (10%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           ++ ++L   +    L  G+R HA ++ + + P  +L   LI  Y+KC  LS ARK+FD  
Sbjct: 628 QWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTT 687

Query: 120 RE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            +  R++V+W A++SA++ KA   +  +LF  + RS       T A V   C  +     
Sbjct: 688 PDTSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSA 745

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            + +H   +K   +  ++V  +L+++YAK GRI EAR +F+ +  RDVV    ++  Y  
Sbjct: 746 AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL+ EA+ LF +    G+  + VT       L  LA +   KQ   +VL +++      
Sbjct: 806 TGLEYEALLLFSEFNRTGLRPDDVT-------LCTLARVVKSKQ---NVLEWQLKQLKAY 855

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
              L  MY              +     VI+WN  L  + + G   E V+ F  M   ++
Sbjct: 856 GTKLF-MYDD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMI-NSR 901

Query: 358 VKPDSVTYLAVLS-----GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           V  D +T++ +LS      C   G +  G+ V       + G +  +    C+++M  + 
Sbjct: 902 VACDGLTFVVMLSVVAGLNCLELGKQIHGIVV-------RSGLDQVVSVGNCLINMYVKT 954

Query: 413 GRVGEA 418
           G V  A
Sbjct: 955 GSVSRA 960



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 28   PNPQNL--KTLCS----NGQLTKALIEMATLGL-EMRFEEYD--TLLNACVNQRTLRGGQ 78
            P+P ++   T+ S    NGQ   AL     + L +++ +EY   TL+ AC     L  G+
Sbjct: 1171 PSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGR 1230

Query: 79   RVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
            ++HA+ +K  C   P ++ T L+  Y KC  + DAR +F       + SW AMI   +Q 
Sbjct: 1231 QIHANTVKLNCAFDP-FVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQH 1289

Query: 138  AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHIYV 196
             ++ EAL  F  M      P+  TF  VL++C+      E  +  +S+      E  I  
Sbjct: 1290 GNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEH 1349

Query: 197  GSSLLDMYAKAGRIHEARGVFECLP 221
             S L+D  ++AGRI EA  V   +P
Sbjct: 1350 YSCLVDALSRAGRIREAEKVISSMP 1374


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 357/602 (59%), Gaps = 9/602 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRL 99
           +  + L +M  LG+      + + L AC     L  G+ +HA++IK        ++ + L
Sbjct: 254 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 313

Query: 100 IVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTE 156
           +  Y   E +  AR++FD + +  + +  W AMI  Y+Q     EAL LF RM   +   
Sbjct: 314 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 373

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P E T A+VL +CA +  F   + +H  ++K     + +V ++L+DMYA+ G+   AR +
Sbjct: 374 PCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRI 433

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV---EGMISNYVTYASVLTALSGL 273
           F  +   DVVS   +I+G    G   +A +L R++Q     G++ N +T  ++L   + L
Sbjct: 434 FAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAIL 493

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           AA   GK++H + +R  + + V + ++L+DMY+KCG L  SR VFD +  R  I+WN ++
Sbjct: 494 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 553

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           + Y  HG+G E   LF+ M    + +P+ VT++A L+ CSH GM DRGL +FH + +   
Sbjct: 554 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAM-ERDH 612

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEF 452
           G EP  +   CVVD+LGRAGR+ EA   + +M   E   +   ++LGACR+H NV +GE 
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEI 672

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
            G+RL+E+EPE A +YV+L N+Y++AG+W     VR  M+ + V K+PG SWIE+D  +H
Sbjct: 673 AGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIH 732

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A + +HP  EE+ A ++ L  +    GY PD SCVL+D+D+  K  VL  HSEKLA+
Sbjct: 733 RFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAI 792

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGL+    GA IRV KNLR+C DCH  AKF+SK+ GR++ LRD  RFHH   G CSCGD
Sbjct: 793 AFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGD 852

Query: 633 YW 634
           YW
Sbjct: 853 YW 854



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 188/376 (50%), Gaps = 28/376 (7%)

Query: 73  TLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWT 128
            +R G+  HA  +K    +    +    L+  Y +   ++DA+++F        +VV+W 
Sbjct: 181 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 240

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            M+S   Q     EA+     M+     P+  TFA+ L +C+     ++G+++H+ +IK 
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD 300

Query: 189 N-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAI 245
           +   ++ +V S+L+DMYA   ++ +AR VF+ +P+  + +    A+I GYAQ G+DEEA+
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 246 ELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            LF +++ E G +    T ASVL A +   A    + VH +V++  +     +QN+L+DM
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 420

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-----EENKVK 359
           Y++ G    +RR+F  +    V+SWN ++ G    G    V + F L R     EE  V 
Sbjct: 421 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG---HVADAFQLAREMQQLEEGGVV 477

Query: 360 PDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           P+++T + +L GC+       G E  G AV H +       + ++     +VDM  + G 
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL-------DTDVAVGSALVDMYAKCGC 530

Query: 415 VGEALEFIKNMPFEPT 430
           +  +      +P   T
Sbjct: 531 LALSRAVFDRLPRRNT 546



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 31/316 (9%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           ++A    A +  AL+  I M     + +       + S A        + IH+  ++   
Sbjct: 30  LTAAGNHAAALRALS-SITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGL 88

Query: 191 --ESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIE 246
                  V ++LL  YA+ GR+  A  VF  + +   D VS  ++IS        + A+ 
Sbjct: 89  LHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALA 148

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGL----AALGHGKQVHSHVL---------RFEIPS 293
             R +   G      T  SVL A+S L    AA+  G++ H+  L         RF    
Sbjct: 149 ALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAF-- 206

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVE-LFN 350
                N+L+ MY++ G +  ++R+F   +     V++WN M+    + GM  E V+ L++
Sbjct: 207 -----NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYD 261

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
           ++     V+PD VT+ + L  CS   + D G  + H  V   D           +VDM  
Sbjct: 262 MV--ALGVRPDGVTFASALPACSRLELLDVGREM-HAYVIKDDELAANSFVASALVDMYA 318

Query: 411 RAGRVGEALEFIKNMP 426
              +VG+A +    +P
Sbjct: 319 THEQVGKARQVFDMVP 334


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 357/602 (59%), Gaps = 9/602 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRL 99
           +  + L +M  LG+      + + L AC     L  G+ +HA++IK        ++ + L
Sbjct: 254 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 313

Query: 100 IVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTE 156
           +  Y   E +  AR++FD + +  + +  W AMI  Y+Q     EAL LF RM   +   
Sbjct: 314 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 373

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P E T A+VL +CA +  F   + +H  ++K     + +V ++L+DMYA+ G+   AR +
Sbjct: 374 PCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRI 433

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV---EGMISNYVTYASVLTALSGL 273
           F  +   DVVS   +I+G    G   +A +L R++Q     G++ N +T  ++L   + L
Sbjct: 434 FAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAIL 493

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           AA   GK++H + +R  + + V + ++L+DMY+KCG L  SR VFD +  R  I+WN ++
Sbjct: 494 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 553

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           + Y  HG+G E   LF+ M    + +P+ VT++A L+ CSH GM DRGL +FH + +   
Sbjct: 554 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAM-ERDH 612

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF-EPTAAILGSLLGACRVHYNVDIGEF 452
           G EP  +   CVVD+LGRAGR+ EA   + +M   E   +   ++LGACR+H NV +GE 
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEI 672

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
            G+RL+E+EPE A +YV+L N+Y++AG+W     VR  M+ + V K+PG SWIE+D  +H
Sbjct: 673 AGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIH 732

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A + +HP  EE+ A ++ L  +    GY PD SCVL+D+D+  K  VL  HSEKLA+
Sbjct: 733 RFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAI 792

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGL+    GA IRV KNLR+C DCH  AKF+SK+ GR++ LRD  RFHH   G CSCGD
Sbjct: 793 AFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGD 852

Query: 633 YW 634
           YW
Sbjct: 853 YW 854



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 188/376 (50%), Gaps = 28/376 (7%)

Query: 73  TLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWT 128
            +R G+  HA  +K    +    +    L+  Y +   ++DA+++F        +VV+W 
Sbjct: 181 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 240

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            M+S   Q     EA+     M+     P+  TFA+ L +C+     ++G+++H+ +IK 
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD 300

Query: 189 N-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAI 245
           +   ++ +V S+L+DMYA   ++ +AR VF+ +P+  + +    A+I GYAQ G+DEEA+
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 246 ELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            LF +++ E G +    T ASVL A +   A    + VH +V++  +     +QN+L+DM
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 420

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-----EENKVK 359
           Y++ G    +RR+F  +    V+SWN ++ G    G    V + F L R     EE  V 
Sbjct: 421 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG---HVADAFQLAREMQQLEEGGVV 477

Query: 360 PDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           P+++T + +L GC+       G E  G AV H +       + ++     +VDM  + G 
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL-------DTDVAVGSALVDMYAKCGC 530

Query: 415 VGEALEFIKNMPFEPT 430
           +  +      +P   T
Sbjct: 531 LALSRAVFDRLPRRNT 546



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 31/316 (9%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           ++A    A +  AL+  I M     + +       + S A        + IH+  ++   
Sbjct: 30  LTAAGNHAAALRALS-SITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGL 88

Query: 191 --ESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIE 246
                  V ++LL  YA+ GR+  A  VF  + +   D VS  ++IS        + A+ 
Sbjct: 89  LHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALA 148

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGL----AALGHGKQVHSHVL---------RFEIPS 293
             R +   G      T  SVL A+S L    AA+  G++ H+  L         RF    
Sbjct: 149 ALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAF-- 206

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVE-LFN 350
                N+L+ MY++ G +  ++R+F   +     V++WN M+    + GM  E V+ L++
Sbjct: 207 -----NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYD 261

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
           ++     V+PD VT+ + L  CS   + D G  + H  V   D           +VDM  
Sbjct: 262 MV--ALGVRPDGVTFASALPACSRLELLDVGREM-HAYVIKDDELAANSFVASALVDMYA 318

Query: 411 RAGRVGEALEFIKNMP 426
              +VG+A +    +P
Sbjct: 319 THEQVGKARQVFDMVP 334


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 357/602 (59%), Gaps = 9/602 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRL 99
           +  + L +M  LG+      + + L AC     L  G+ +HA++IK        ++ + L
Sbjct: 256 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 315

Query: 100 IVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTE 156
           +  Y   E +  AR++FD + +  + +  W AMI  Y+Q     EAL LF RM   +   
Sbjct: 316 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 375

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P E T A+VL +CA +  F   + +H  ++K     + +V ++L+DMYA+ G+   AR +
Sbjct: 376 PCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRI 435

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV---EGMISNYVTYASVLTALSGL 273
           F  +   DVVS   +I+G    G   +A +L R++Q     G++ N +T  ++L   + L
Sbjct: 436 FAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAIL 495

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           AA   GK++H + +R  + + V + ++L+DMY+KCG L  SR VFD +  R  I+WN ++
Sbjct: 496 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 555

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           + Y  HG+G E   LF+ M    + +P+ VT++A L+ CSH GM DRGL +FH + +   
Sbjct: 556 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAM-ERDH 614

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF-EPTAAILGSLLGACRVHYNVDIGEF 452
           G EP  +   CVVD+LGRAGR+ EA   + +M   E   +   ++LGACR+H NV +GE 
Sbjct: 615 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEI 674

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
            G+RL+E+EPE A +YV+L N+Y++AG+W     VR  M+ + V K+PG SWIE+D  +H
Sbjct: 675 AGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIH 734

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A + +HP  EE+ A ++ L  +    GY PD SCVL+D+D+  K  VL  HSEKLA+
Sbjct: 735 RFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAI 794

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGL+    GA IRV KNLR+C DCH  AKF+SK+ GR++ LRD  RFHH   G CSCGD
Sbjct: 795 AFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGD 854

Query: 633 YW 634
           YW
Sbjct: 855 YW 856



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 188/376 (50%), Gaps = 28/376 (7%)

Query: 73  TLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWT 128
            +R G+  HA  +K    +    +    L+  Y +   ++DA+++F        +VV+W 
Sbjct: 183 AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 242

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            M+S   Q     EA+     M+     P+  TFA+ L +C+     ++G+++H+ +IK 
Sbjct: 243 TMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD 302

Query: 189 N-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAI 245
           +   ++ +V S+L+DMYA   ++ +AR VF+ +P+  + +    A+I GYAQ G+DEEA+
Sbjct: 303 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 362

Query: 246 ELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            LF +++ E G +    T ASVL A +   A    + VH +V++  +     +QN+L+DM
Sbjct: 363 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 422

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-----EENKVK 359
           Y++ G    +RR+F  +    V+SWN ++ G    G    V + F L R     EE  V 
Sbjct: 423 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG---HVADAFQLAREMQQLEEGGVV 479

Query: 360 PDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           P+++T + +L GC+       G E  G AV H +       + ++     +VDM  + G 
Sbjct: 480 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL-------DTDVAVGSALVDMYAKCGC 532

Query: 415 VGEALEFIKNMPFEPT 430
           +  +      +P   T
Sbjct: 533 LALSRAVFDRLPRRNT 548



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 31/316 (9%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           ++A    A +  AL+  I M     + +       + S A        + IH+  ++   
Sbjct: 32  LTAAGNHAAALRALS-SITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGL 90

Query: 191 --ESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIE 246
                  V ++LL  YA+ GR+  A  VF  + +   D VS  ++IS        + A+ 
Sbjct: 91  LHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALA 150

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGL----AALGHGKQVHSHVL---------RFEIPS 293
             R +   G      T  SVL A+S L    AA+  G++ H+  L         RF    
Sbjct: 151 ALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAF-- 208

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVE-LFN 350
                N+L+ MY++ G +  ++R+F   +     V++WN M+    + GM  E V+ L++
Sbjct: 209 -----NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYD 263

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
           ++     V+PD VT+ + L  CS   + D G  + H  V   D           +VDM  
Sbjct: 264 MV--ALGVRPDGVTFASALPACSRLELLDVGREM-HAYVIKDDELAANSFVASALVDMYA 320

Query: 411 RAGRVGEALEFIKNMP 426
              +VG+A +    +P
Sbjct: 321 THEQVGKARQVFDMVP 336


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/617 (39%), Positives = 359/617 (58%), Gaps = 54/617 (8%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC----LSDARKMFDEMRERNVV 125
           N RT+R   ++HA  IK+           ++ F    +     L  A K+F++M +RN  
Sbjct: 32  NCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCF 91

Query: 126 SWTAMISAYSQ--KAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIH 182
           SW  +I  +S+  +  +  A+ LF  M+  +  EPN FTF +VL +CA     + GKQIH
Sbjct: 92  SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF------------------------- 217
            L +K  F    +V S+L+ MY   G + +AR +F                         
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211

Query: 218 -----------EC---------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
                      +C         + +R VVS   +ISGY+  G  ++A+E+FR+++   + 
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            NYVT  SVL A+S L +L  G+ +H +     I    VL ++LIDMYSKCG +  +  V
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F+ +    VI+W+AM+ G++ HG   + ++ F  MR+   V+P  V Y+ +L+ CSHGG+
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTACSHGGL 390

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            + G   F ++V   DG EP IEHYGC+VD+LGR+G + EA EFI NMP +P   I  +L
Sbjct: 391 VEEGRRYFSQMVSV-DGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKAL 449

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGACR+  NV++G+ V   LM++ P ++G YV LSN+YAS G W +V+ +R  MKEK + 
Sbjct: 450 LGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIR 509

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           KDPG S I++D +LH F   D SHP  +E+++ + ++S K + AGY P  + VL +++EE
Sbjct: 510 KDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEE 569

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
            KE VL  HSEK+A  FGLI T  G PIR++KNLRIC DCH+  K +SKVY RK+++RD+
Sbjct: 570 DKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDR 629

Query: 618 NRFHHIVEGTCSCGDYW 634
            RFHH  +G+CSC DYW
Sbjct: 630 KRFHHFQDGSCSCMDYW 646



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 171/383 (44%), Gaps = 64/383 (16%)

Query: 44  KALIEMATLGLEMRFEEY--------DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           KALI + TL  EM  +E+         ++L AC     ++ G+++H   +K  +    ++
Sbjct: 107 KALIAI-TLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFV 165

Query: 96  RTRLIVFYNKCECLSD-------------------------------------------- 111
            + L+  Y  C  + D                                            
Sbjct: 166 MSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCK 225

Query: 112 -ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            AR +FD+MR+R+VVSW  MIS YS      +A+ +F  M + D  PN  T  +VL + +
Sbjct: 226 AARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                ELG+ +H     S       +GS+L+DMY+K G I +A  VFE LP  +V++ +A
Sbjct: 286 RLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSA 345

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+G+A  G   +AI+ F K++  G+  + V Y ++LTA S    +  G++  S ++  +
Sbjct: 346 MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVD 405

Query: 291 -IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG---MGREV 345
            +   +     ++D+  + G L  +     NM  +   + W A+L      G   MG+ V
Sbjct: 406 GLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRV 465

Query: 346 VELFNLMREENKVKPDSVTYLAV 368
             +   M     V  DS  Y+A+
Sbjct: 466 ANILMDM-----VPHDSGAYVAL 483


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 347/572 (60%), Gaps = 2/572 (0%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L++A  +   L  G+ +HA + K  +     +   L+  Y K   + D  ++F+    R
Sbjct: 436  SLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR 495

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            +++SW A++S +         L +F +ML     PN +TF ++L SC+     +LGKQ+H
Sbjct: 496  DLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVH 555

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            + I+K++ + + +VG++L+DMYAK   + +A  +F  L +RD+ + T I++GYAQ G  E
Sbjct: 556  AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 615

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            +A++ F ++Q EG+  N  T AS L+  S +A L  G+Q+HS  ++      + + ++L+
Sbjct: 616  KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALV 675

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMY+KCG +  +  VFD +  R  +SWN ++ GYS+HG G + ++ F  M +E  V PD 
Sbjct: 676  DMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV-PDE 734

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            VT++ VLS CSH G+ + G   F+ +     G  P IEHY C+VD+LGRAG+  E   FI
Sbjct: 735  VTFIGVLSACSHMGLIEEGKKHFNSLSKIY-GITPTIEHYACMVDILGRAGKFHEVESFI 793

Query: 423  KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            + M       I  ++LGAC++H N++ GE    +L E+EPE   NY++LSN++A+ G W+
Sbjct: 794  EEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWD 853

Query: 483  DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            DVT VR LM  + V K+PG SW+E++  +H F + D SHP   E+  K++ L  K    G
Sbjct: 854  DVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVG 913

Query: 543  YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
            Y P+   VL++V + +K+++L  HSE+LAL F L+ T     IR+ KNLRIC DCH+F K
Sbjct: 914  YTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMK 973

Query: 603  FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +S++  +++ +RD N FHH   G+CSC ++W
Sbjct: 974  SISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 196/362 (54%), Gaps = 3/362 (0%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           R  +Y  +L  C ++  L  G+ +H  +IK+   P  +L   L+  Y KC   + A K+F
Sbjct: 127 RLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 186

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            E+ ER+VVSWTA+I+ +  + +   A+NLF  M R   E NEFT+AT L +C+     E
Sbjct: 187 GEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLE 246

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            GKQ+H+  IK    S ++VGS+L+D+YAK G +  A  VF C+P+++ VS  A+++G+A
Sbjct: 247 FGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q+G  E+ + LF ++    +  +  T ++VL   +    L  G+ VHS  +R        
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +   L+DMYSKCG    + +VF  + +  V+SW+A++    + G  RE  E+F  MR   
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V P+  T  +++S  +  G    G ++ H  V CK GFE +      +V M  + G V 
Sbjct: 427 -VIPNQFTLASLVSAATDLGDLYYGESI-HACV-CKYGFEYDNTVCNALVTMYMKIGSVQ 483

Query: 417 EA 418
           + 
Sbjct: 484 DG 485



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 192/368 (52%), Gaps = 5/368 (1%)

Query: 53  GLEMRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           G E+ F ++   T+L  C N   LR GQ VH+  I+       ++   L+  Y+KC    
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           DA K+F  + + +VVSW+A+I+   QK  S EA  +F RM  S   PN+FT A+++++  
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                  G+ IH+ + K  FE    V ++L+ MY K G + +   VFE    RD++S  A
Sbjct: 443 DLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNA 502

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           ++SG+      +  + +F ++  EG   N  T+ S+L + S L+ +  GKQVH+ +++  
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 562

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           +     +  +L+DMY+K   L  +  +F+ + +R + +W  ++ GY++ G G + V+ F 
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 622

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M+ E  VKP+  T  + LSGCS     D G  +    +  K G   ++     +VDM  
Sbjct: 623 QMQREG-VKPNEFTLASSLSGCSRIATLDSGRQLHSMAI--KAGQSGDMFVASALVDMYA 679

Query: 411 RAGRVGEA 418
           + G V +A
Sbjct: 680 KCGCVEDA 687



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 186/342 (54%), Gaps = 1/342 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+E     Y T L AC     L  G++VHA  IK      +++ + L+  Y KC 
Sbjct: 219 EMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG 278

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A ++F  M ++N VSW A+++ ++Q   + + LNLF RM  S+   ++FT +TVL 
Sbjct: 279 EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CA +     G+ +HSL I+   E   ++   L+DMY+K G   +A  VF  + + DVVS
Sbjct: 339 GCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS 398

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            +AII+   Q G   EA E+F++++  G+I N  T AS+++A + L  L +G+ +H+ V 
Sbjct: 399 WSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVC 458

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++       + N+L+ MY K GS+    RVF+  + R +ISWNA+L G+  +      + 
Sbjct: 459 KYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLR 518

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           +FN M  E    P+  T++++L  CS     D G  V  +IV
Sbjct: 519 IFNQMLAEG-FNPNMYTFISILRSCSSLSDVDLGKQVHAQIV 559



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 160/313 (51%), Gaps = 6/313 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G       + ++L +C +   +  G++VHA ++K       ++ T L+  Y K  
Sbjct: 522 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNR 581

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L DA  +F+ + +R++ +WT +++ Y+Q     +A+  FI+M R   +PNEFT A+ L+
Sbjct: 582 FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLS 641

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            C+     + G+Q+HS+ IK+     ++V S+L+DMYAK G + +A  VF+ L  RD VS
Sbjct: 642 GCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 701

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              II GY+Q G   +A++ F  +  EG + + VT+  VL+A S +  +  GK+  + + 
Sbjct: 702 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 761

Query: 288 R-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGM---- 341
           + + I   +     ++D+  + G         + M     V+ W  +L     HG     
Sbjct: 762 KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 821

Query: 342 GREVVELFNLMRE 354
            R  ++LF L  E
Sbjct: 822 ERAAMKLFELEPE 834



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 151/272 (55%), Gaps = 3/272 (1%)

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           R L  D++     ++ +L +CA       GK IH  +IKS      ++ +SL+++YAK G
Sbjct: 118 RGLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG 177

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
             + A  VF  +PERDVVS TA+I+G+   G    A+ LF +++ EG+ +N  TYA+ L 
Sbjct: 178 SANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALK 237

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A S    L  GKQVH+  ++    S + + ++L+D+Y+KCG +  + RVF  M ++  +S
Sbjct: 238 ACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVS 297

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WNA+L G+++ G   +V+ LF  M   +++     T   VL GC++ G   R   + H +
Sbjct: 298 WNALLNGFAQMGDAEKVLNLFCRM-TGSEINFSKFTLSTVLKGCANSG-NLRAGQIVHSL 355

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
              + G E +     C+VDM  + G  G+AL+
Sbjct: 356 A-IRIGCELDEFISCCLVDMYSKCGLAGDALK 386



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 1/176 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  I+M   G++       + L+ C    TL  G+++H+  IK      +++ + L+  Y
Sbjct: 619 KCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMY 678

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC C+ DA  +FD +  R+ VSW  +I  YSQ     +AL  F  ML   T P+E TF 
Sbjct: 679 AKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 738

Query: 164 TVLTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            VL++C+     E GK+  +SL         I   + ++D+  +AG+ HE     E
Sbjct: 739 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIE 794


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 372/614 (60%), Gaps = 41/614 (6%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL   F  +  LL +C   +T + GQ++H H++K  +   +Y+ T LI  Y
Sbjct: 61  KLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMY 120

Query: 104 NKCECLSDARK-------------------------------MFDEMRERNVVSWTAMIS 132
            +   L DA+K                               MFDE+  ++VVSW AMIS
Sbjct: 121 AQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMIS 180

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++  +  +AL LF  M++++ +P+E T ATV+++CA +   ELG+Q+HS I    F S
Sbjct: 181 GYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS 240

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G +  A  + E L  +DV+S   +I GY  + L +EA+ LF+++ 
Sbjct: 241 NLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEML 300

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV-----LQNSLIDMYSK 307
             G   N VT  S+L A + L A+  G+ +H ++ + ++   VV     L+ SLIDMY+K
Sbjct: 301 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGVVVTNASSLRTSLIDMYAK 359

Query: 308 CGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           CG +  + +V D+ +  R++ +WNAM+ G++ HG      ++F+ MR +N ++PD +T++
Sbjct: 360 CGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR-KNGIEPDDITFV 418

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            +LS CSH GM D G  +F  +    +   P++EHYGC++D+LG +G   EA E I  MP
Sbjct: 419 GLLSACSHSGMLDLGRNIFRSMRQDYN-ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 477

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486
            EP   I  SLL AC++H N+++GE   ++L++IEPEN G+YV+LSN+YA+AG+W +V +
Sbjct: 478 MEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXK 537

Query: 487 VRELMKEKAVTKD-PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
           +R L+ +K + K  PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VP
Sbjct: 538 IRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVP 597

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           D S VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K +S
Sbjct: 598 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 657

Query: 606 KVYGRKVSLRDKNR 619
           K+Y R++  RD+ R
Sbjct: 658 KIYKREIIARDRTR 671



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 192/392 (48%), Gaps = 38/392 (9%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A  +F+ + E N + W  M   ++  +    AL L++ M+     PN FTF  +L S
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +  F+ G+QIH  ++K  F+  +YV +SL+ MYA+ GR+ +A+ VF+    RDVVS 
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV--------------------- 261
           TA+I+GYA  G  E A ++F ++ ++       MIS Y                      
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 262 ----TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
               T A+V++A +   ++  G+QVHS +      S + + N+LID+YSKCG +  +  +
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
            + +S + VISWN ++ GY+   + +E + LF  M    +  P+ VT L++L  C+H G 
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGA 323

Query: 378 EDRGLAVFHEIVDCKDG---FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            D G  + H  +D K               ++DM  + G +  A +   +  F  + +  
Sbjct: 324 IDIGRWI-HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTW 382

Query: 435 GSLLGACRVH--YNVDIGEFVGQRLMEIEPEN 464
            +++    +H   N     F   R   IEP++
Sbjct: 383 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDD 414


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 335/526 (63%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S A  +F  +   NV +W  +I  Y++  +   A   + +M+ S  EP+  T+  +L +
Sbjct: 68  MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKA 127

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            + +     G+ IHS+ I++ FES ++V +SLL +YA  G    A  VFE + ERD+V+ 
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAW 187

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            ++I+G+A  G   EA+ LFR++ VEG+  +  T  S+L+A + L AL  G++VH ++L+
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 247

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +     + NSL+D+Y+KCG++  ++RVF  MSER  +SW +++VG + +G G E +EL
Sbjct: 248 VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALEL 307

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M  +  V P  +T++ VL  CSH GM D G   F  + + + G  P IEHYGC+VD+
Sbjct: 308 FKEMEGQGLV-PSEITFVGVLYACSHCGMLDEGFEYFRRMKE-ECGIIPRIEHYGCMVDL 365

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           L RAG V +A E+I+NMP +P A I  +LLGAC +H ++ +GE     L+ +EP+++G+Y
Sbjct: 366 LSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDY 425

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSNLYAS  RW DV  +R  M +  V K PG S +EL   ++ F   DRSHP  +++ 
Sbjct: 426 VLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVY 485

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           A +++++   K  GYVP  + VL D++EE+KE+ L  HSEK+A+ F L+ TP G PIRV+
Sbjct: 486 ALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVM 545

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K ++K+Y R++ +RD++RFHH   G+CSC DYW
Sbjct: 546 KNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 153/295 (51%), Gaps = 2/295 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M    +E     Y  LL A      +R G+ +H+  I+  +   V+++  L+  Y  C 
Sbjct: 108 QMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG 167

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
               A K+F+ M+ER++V+W +MI+ ++      EAL LF  M     EP+ FT  ++L+
Sbjct: 168 DTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLS 227

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A     ELG+++H  ++K     + +V +SLLD+YAK G I EA+ VF  + ER+ VS
Sbjct: 228 ASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVS 287

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I G A  G  EEA+ELF++++ +G++ + +T+  VL A S    L  G +    + 
Sbjct: 288 WTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMK 347

Query: 288 -RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
               I   +     ++D+ S+ G +  +     NM  +   + W  +L   + HG
Sbjct: 348 EECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHG 402


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/542 (39%), Positives = 333/542 (61%), Gaps = 2/542 (0%)

Query: 93   VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
            V++   L+ FY+KC+CL D R++FDEM ER+ VS+  +I+AY+    +   L LF  M +
Sbjct: 469  VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 528

Query: 153  SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
               +     +AT+L+         +GKQIH+ ++     S   +G++L+DMY+K G +  
Sbjct: 529  LGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 588

Query: 213  ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
            A+  F    E+  +S TA+I+GY Q G  EEA++LF  ++  G+  +  T++S++ A S 
Sbjct: 589  AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 648

Query: 273  LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
            LA +G G+Q+HS+++R    S V   + L+DMY+KCG L  + R FD M ER  ISWNA+
Sbjct: 649  LAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAV 708

Query: 333  LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
            +  Y+ +G  +  +++F  M       PDSVT+L+VL+ CSH G+ D  +  FH ++  +
Sbjct: 709  ISAYAHYGEAKNAIKMFEGMLHCG-FNPDSVTFLSVLAACSHNGLADECMKYFH-LMKHQ 766

Query: 393  DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
                P  EHY CV+D LGR G   +  + +  MPF+    I  S+L +CR+H N ++   
Sbjct: 767  YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 826

Query: 453  VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
               +L  +EP +A  YVILSN+YA AG+WED   V+++M+++ V K+ G SW+E+ Q ++
Sbjct: 827  AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 886

Query: 513  TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            +F ++D + PM +E+  ++ +L  +  + GY PD++C L+ VD E K + L  HSE+LA+
Sbjct: 887  SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 946

Query: 573  TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
             F L+ TP G PIR++KNL  C+DCH   K +SK+  R + +RD  RFHH  +G CSCGD
Sbjct: 947  AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 1006

Query: 633  YW 634
            YW
Sbjct: 1007 YW 1008



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 177/347 (51%), Gaps = 19/347 (5%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +H   IK      V++   L+  Y K   L+ AR++F EM +++ V++ AM+   S++  
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             +AL LF  M R+    +                  L +  HS   +S    +++V +S
Sbjct: 431 HTQALQLFAAMRRAGYSRHPL---------------HLLQYSHSRS-RSTSVLNVFVNNS 474

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD Y+K   + + R +F+ +PERD VS   II+ YA        + LFR++Q  G    
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            + YA++L+    L  +  GKQ+H+ ++   + S  +L N+LIDMYSKCG L  ++  F 
Sbjct: 535 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 594

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           N SE++ ISW A++ GY ++G   E ++LF+ MR    ++PD  T+ +++   S   M  
Sbjct: 595 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG-LRPDRATFSSIIKASSSLAMIG 653

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G  +   ++  + G++  +     +VDM  + G + EAL     MP
Sbjct: 654 LGRQLHSYLI--RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 698



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 152/296 (51%), Gaps = 4/296 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG + +   Y T+L+   +   +  G+++HA ++         L   LI  Y+KC 
Sbjct: 525 EMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCG 584

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A+  F    E++ +SWTA+I+ Y Q     EAL LF  M R+   P+  TF++++ 
Sbjct: 585 MLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIK 644

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + +      LG+Q+HS +I+S ++S ++ GS L+DMYAK G + EA   F+ +PER+ +S
Sbjct: 645 ASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS 704

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS--GLAALGHGKQVHSH 285
             A+IS YA  G  + AI++F  +   G   + VT+ SVL A S  GLA     K  H  
Sbjct: 705 WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM-KYFHLM 763

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHG 340
             ++ I  +      +ID   + G  +  +++   M  +   I W ++L     HG
Sbjct: 764 KHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 819



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 21/256 (8%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y+    L  A+ +F     RN  +WT M+ A++    + +AL+LF  ML     P+
Sbjct: 294 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 353

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             T  TVL              +H   IK   ++H++V ++LLD Y K G +  AR VF 
Sbjct: 354 RVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFL 408

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + ++D V+  A++ G ++ GL  +A++LF  ++  G    Y  +   L   S      H
Sbjct: 409 EMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG----YSRHPLHLLQYS------H 458

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            +   + VL       V + NSL+D YSKC  L   RR+FD M ER  +S+N ++  Y+ 
Sbjct: 459 SRSRSTSVLN------VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 512

Query: 339 HGMGREVVELFNLMRE 354
           +     V+ LF  M++
Sbjct: 513 NQCAATVLRLFREMQK 528



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +I+  + +L  Y+ +G +  A+ +F   P R+  + T ++  +A  G   +A+ LFR + 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            EG+I + VT  +VL  L G         +H   ++F + ++V + N+L+D Y K G L 
Sbjct: 347 GEGVIPDRVTVTTVLN-LPGCTV----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLA 401

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            +RRVF  M ++  +++NAM++G SK G+  + ++LF  MR
Sbjct: 402 AARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 442


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 335/559 (59%), Gaps = 3/559 (0%)

Query: 77   GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            G +VH + IK       ++ T LI  Y+K   + +A  +     + ++ SW A++  Y +
Sbjct: 1017 GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 137  KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
               S +AL  F  M       +E T AT + +       + GKQI +  IK  F + ++V
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 197  GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
             S +LDMY K G +  A  +F  +   D V+ T +ISGY + G ++ A+ ++  ++V G+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 257  ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
              +  T+A+++ A S L AL  GKQ+H++V++ +      +  SL+DMY KCGS+  + R
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 317  VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            VF  M  R V+ WNAML+G ++HG   E + LF  M + N ++PD VT++ VLS CSH G
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM-QSNGIQPDKVTFIGVLSACSHSG 1315

Query: 377  MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            +       F  +     G  PEIEHY C+VD LGRAGR+ EA   I +MPF+ +A++  +
Sbjct: 1316 LFSEAYKYFDAMFKTY-GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRA 1374

Query: 437  LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            LLGACR   + +  + V  +L+ ++P ++  YV+LSN+YA++ +W+DVT  R +MK K V
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 497  TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG-YVPDMSCVLYDVD 555
             KDPG SWI++   +H F   DRSHP    +  K++ L  + +E G YVPD    L DV+
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 556  EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
            EE+KE+ L  HSEKLA+ FGLI TP  A IRVIKNLR+C DCH+  K +SK+  R++ LR
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 616  DKNRFHHIVEGTCSCGDYW 634
            D NRFHH   GTCSCGDYW
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 199/390 (51%), Gaps = 11/390 (2%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            +L+A V    L  G+++HA +IK+ + P V +   L+  Y+K   +  A K F    E +
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFG--FELGKQ 180
            ++SW  MIS+Y+Q     EA+  F  +LR   +P++FT A+VL +C+ G  G  F LG Q
Sbjct: 960  LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ 1019

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            +H   IK    +  +V ++L+D+Y+K G++ EA  +     + D+ S  AI+ GY +   
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +A+E F  +   G+  + +T A+ + A   L  L  GKQ+ ++ ++    + + + + 
Sbjct: 1080 SRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSG 1139

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            ++DMY KCG +  +  +F  +S    ++W  M+ GY ++G     + +++LMR    V+P
Sbjct: 1140 VLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG-VQP 1198

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY--GCVVDMLGRAGRVGEA 418
            D  T+  ++   S     ++G  +   +V      +  ++H+    +VDM  + G V +A
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVK----LDYSLDHFVGTSLVDMYCKCGSVQDA 1254

Query: 419  LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                + M           LLG  + H +VD
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQ-HGHVD 1283



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 160/316 (50%), Gaps = 10/316 (3%)

Query: 112  ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            A KMF   +  N+ +W   ++ +        A++ F  +LRS    +  T   +L++  G
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 172  AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
            A   +LG+QIH+L+IKS+F   + V +SL++MY+KAG ++ A   F   PE D++S   +
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 232  ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA---LGHGKQVHSHVLR 288
            IS YAQ  L+ EAI  FR L  +G+  +  T ASVL A S          G QVH + ++
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIK 1026

Query: 289  FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
              I +   +  +LID+YSK G +  +  +     +  + SWNA++ GY K    R+ +E 
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 349  FNLMREENKVKPDSVTYLAVL--SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            F+LM E   +  D +T    +  SGC     + + +  +      K GF  ++     V+
Sbjct: 1087 FSLMHEMG-IPIDEITLATAIKASGCLINLKQGKQIQAYA----IKLGFNNDLWVSSGVL 1141

Query: 407  DMLGRAGRVGEALEFI 422
            DM  + G +  ALE  
Sbjct: 1142 DMYIKCGDMPNALELF 1157



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 1/264 (0%)

Query: 73   TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
             L+ G+++ A+ IK  +   +++ + ++  Y KC  + +A ++F E+   + V+WT MIS
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 133  AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
             Y +      AL+++  M  S  +P+E+TFAT++ + +     E GKQIH+ ++K ++  
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL 1233

Query: 193  HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
              +VG+SL+DMY K G + +A  VF  +  R VV   A++ G AQ G  +EA+ LFR +Q
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 253  VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
              G+  + VT+  VL+A S         +    + + + I   +   + L+D   + G +
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 312  TYSRRVFDNMSERTVISWNAMLVG 335
              +  V  +M  +   S    L+G
Sbjct: 1354 QEAENVIASMPFKASASMYRALLG 1377



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 167/366 (45%), Gaps = 49/366 (13%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L+ G+R HA ++ +   P  YL   LI  Y+KC  L  AR++FD+  +R++V+W ++++A
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 134 YSQKAHS-----FEALNLFIRMLRSDTEPNEFTFA-TVLTSCAGAF-----GF-ELGKQI 181
           Y+Q A S      E   LF  +LR      EF F+ T LT           GF ++ + +
Sbjct: 687 YAQFADSSYENVLEGFRLF-GLLR------EFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H   +K  FE  ++V  +L+++Y K G + +AR +F+ +PERD V    ++  Y +    
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +EA+  F      G   ++     V+  ++  + + + ++ H+  ++             
Sbjct: 800 DEALRFFSAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK------------- 844

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKP 360
                      Y+ ++F       + +WN  L  +   G     ++ F  L+R  + +  
Sbjct: 845 ----------AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR--STIGH 892

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DSVT + +LS        D G  + H +V  K  F P +     +++M  +AG V  A +
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQI-HALV-IKSSFAPVVPVSNSLMNMYSKAGVVYAAEK 950

Query: 421 FIKNMP 426
              N P
Sbjct: 951 TFINSP 956



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            + TL+ A      L  G+++HA+++K  Y    ++ T L+  Y KC  + DA ++F +M 
Sbjct: 1203 FATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMD 1262

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGK 179
             R VV W AM+   +Q  H  EALNLF  M  +  +P++ TF  VL++C+ +  F E  K
Sbjct: 1263 VRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYK 1322

Query: 180  QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
               ++         I   S L+D   +AGRI EA  V   +P
Sbjct: 1323 YFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 272 GLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            +A L  GK+ H+ ++   ++P    L N+LI MYSKCGSL  +R+VFD  S+R +++WN
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWN 681

Query: 331 AMLVGYSKHGMGR-----EVVELFNLMRE----ENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           ++L  Y++          E   LF L+RE      ++    +  L +LSG         G
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
            AV       K GFE ++   G +V++  + G VG+A      MP E  A +   +L A
Sbjct: 742 YAV-------KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 346/572 (60%), Gaps = 7/572 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L A    + LR G ++H+   KT CY    Y+ T  I  Y+KC  +  A  +F E R  
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMASTLFREFRRP 285

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++V++ AMI  Y+    +  +L+LF  ++ S  +    T  + L   +G     L   IH
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVS-LVPVSGHL--MLIYAIH 342

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +KSNF SH  V ++L  +Y+K   I  AR +F+  PE+ + S  A+ISGY Q GL E
Sbjct: 343 GYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +AI LFR++Q      N VT   +L+A + L AL  GK VH  V   +  S + +  +LI
Sbjct: 403 DAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALI 462

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY+KCGS+  +RR+FD M ++  ++WN M+ GY  HG G+E + +F+ M     + P  
Sbjct: 463 GMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSG-IAPTP 521

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT+L VL  CSH G+   G  +F+ ++  + GFEP ++HY CVVD+LGRAG +  AL+FI
Sbjct: 522 VTFLCVLYACSHAGLVKEGDEIFNSMIH-RYGFEPSVKHYACVVDILGRAGHLQRALQFI 580

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + MP +P  ++  +LLGACR+H + ++   V ++L E++P+N G +V+LSN++++   + 
Sbjct: 581 EAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP 640

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
               VR+  K++ + K PG + IE+ +  H F + D+SHP  + +  K+++L  K +EAG
Sbjct: 641 QAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAG 700

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P+    L+DV+EE++E ++  HSE+LA+ FGLI T  G  IR+IKNLR+C+DCH   K
Sbjct: 701 YQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATK 760

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 761 LISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 204/448 (45%), Gaps = 33/448 (7%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           + HA ++   +R  + L T+L    +    +  AR +F  ++  +V  +  ++  +S   
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 139 HSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               +L +F  + +S D +PN  T+A  +++ +G      G  IH   I    +S + +G
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLG 157

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           S+++ MY K  R+ +AR VF+ +PE+D +    +ISGY +  +  E+I++FR L  E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 258 S-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T   +L A++ L  L  G Q+HS   +    S+  +    I +YSKCG +  +  
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAST 277

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTYLAVLSG---- 371
           +F       ++++NAM+ GY+ +G     + LF  LM    K+K  ++  L  +SG    
Sbjct: 278 LFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLML 337

Query: 372 -------------CSHGGMEDRGLAVF---HEIVDCKDGFE--PE--IEHYGCVVDMLGR 411
                         SH  +      V+   +EI   +  F+  PE  +  +  ++    +
Sbjct: 338 IYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397

Query: 412 AGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
            G   +A+   + M    F P    +  +L AC     + +G++V   +   + E++  Y
Sbjct: 398 NGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS-IY 456

Query: 469 V--ILSNLYASAGRWEDVTRVRELMKEK 494
           V   L  +YA  G   +  R+ + M +K
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDFMPKK 484



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            ++ H  Q H+ ++     + + L   L    S  G++ Y+R +F ++    V  +N ++
Sbjct: 31  TSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH--EIVDC 391
            G+S +      + +F  +R+   +KP+S TY   +S  S G  +DR   V H   IV  
Sbjct: 91  RGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS-GFRDDRAGCVIHGQAIV-- 147

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            DG + E+     +V M  +  RV +A +    MP + T
Sbjct: 148 -DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 335/559 (59%), Gaps = 3/559 (0%)

Query: 77   GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            G +VH + IK       ++ T LI  Y+K   + +A  +     + ++ SW A++  Y +
Sbjct: 1017 GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 137  KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
               S +AL  F  M       +E T AT + +       + GKQI +  IK  F + ++V
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 197  GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
             S +LDMY K G +  A  +F  +   D V+ T +ISGY + G ++ A+ ++  ++V G+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 257  ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
              +  T+A+++ A S L AL  GKQ+H++V++ +      +  SL+DMY KCGS+  + R
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYR 1256

Query: 317  VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            VF  M  R V+ WNAML+G ++HG   E + LF  M + N ++PD VT++ VLS CSH G
Sbjct: 1257 VFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM-QSNGIQPDKVTFIGVLSACSHSG 1315

Query: 377  MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            +       F  +     G  PEIEHY C+VD LGRAGR+ EA   I +MPF+ +A++  +
Sbjct: 1316 LFSEAYKYFDAMFKTY-GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRA 1374

Query: 437  LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            LLGACR   + +  + V  +L+ ++P ++  YV+LSN+YA++ +W+DVT  R +MK K V
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434

Query: 497  TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG-YVPDMSCVLYDVD 555
             KDPG SWI++   +H F   DRSHP    +  K++ L  + +E G YVPD    L DV+
Sbjct: 1435 KKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVE 1494

Query: 556  EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
            EE+KE+ L  HSEKLA+ FGLI TP  A IRVIKNLR+C DCH+  K +SK+  R++ LR
Sbjct: 1495 EEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLR 1554

Query: 616  DKNRFHHIVEGTCSCGDYW 634
            D NRFHH   GTCSCGDYW
Sbjct: 1555 DANRFHHFRNGTCSCGDYW 1573



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 199/390 (51%), Gaps = 11/390 (2%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            +L+A V    L  G+++HA +IK+ + P V +   L+  Y+K   +  A K F    E +
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFG--FELGKQ 180
            ++SW  MIS+Y+Q     EA+  F  +LR   +P++FT A+VL +C+ G  G  F LG Q
Sbjct: 960  LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ 1019

Query: 181  IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            +H   IK    +  +V ++L+D+Y+K G++ EA  +     + D+ S  AI+ GY +   
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +A+E F  +   G+  + +T A+ + A   L  L  GKQ+ ++ ++    + + + + 
Sbjct: 1080 SRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSG 1139

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            ++DMY KCG +  +  +F  +S    ++W  M+ GY ++G     + +++LMR    V+P
Sbjct: 1140 VLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG-VQP 1198

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY--GCVVDMLGRAGRVGEA 418
            D  T+  ++   S     ++G  +   +V      +  ++H+    +VDM  + G V +A
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVK----LDYSLDHFVGTSLVDMYCKCGSVQDA 1254

Query: 419  LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                + M           LLG  + H +VD
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQ-HGHVD 1283



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 160/316 (50%), Gaps = 10/316 (3%)

Query: 112  ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            A KMF   +  N+ +W   ++ +        A++ F  +LRS    +  T   +L++  G
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVG 906

Query: 172  AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
            A   +LG+QIH+L+IKS+F   + V +SL++MY+KAG ++ A   F   PE D++S   +
Sbjct: 907  ADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTM 966

Query: 232  ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA---LGHGKQVHSHVLR 288
            IS YAQ  L+ EAI  FR L  +G+  +  T ASVL A S          G QVH + ++
Sbjct: 967  ISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIK 1026

Query: 289  FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
              I +   +  +LID+YSK G +  +  +     +  + SWNA++ GY K    R+ +E 
Sbjct: 1027 CGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 349  FNLMREENKVKPDSVTYLAVL--SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            F+LM E   +  D +T    +  SGC     + + +  +      K GF  ++     V+
Sbjct: 1087 FSLMHEMG-IPIDEITLATAIKASGCLINLKQGKQIQAYA----IKLGFNNDLWVSSGVL 1141

Query: 407  DMLGRAGRVGEALEFI 422
            DM  + G +  ALE  
Sbjct: 1142 DMYIKCGDMPNALELF 1157



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 1/264 (0%)

Query: 73   TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
             L+ G+++ A+ IK  +   +++ + ++  Y KC  + +A ++F E+   + V+WT MIS
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMIS 1173

Query: 133  AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
             Y +      AL+++  M  S  +P+E+TFAT++ + +     E GKQIH+ ++K ++  
Sbjct: 1174 GYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL 1233

Query: 193  HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
              +VG+SL+DMY K G + +A  VF  +  R VV   A++ G AQ G  +EA+ LFR +Q
Sbjct: 1234 DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQ 1293

Query: 253  VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
              G+  + VT+  VL+A S         +    + + + I   +   + L+D   + G +
Sbjct: 1294 SNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRI 1353

Query: 312  TYSRRVFDNMSERTVISWNAMLVG 335
              +  V  +M  +   S    L+G
Sbjct: 1354 QEAENVIASMPFKASASMYRALLG 1377



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 167/366 (45%), Gaps = 49/366 (13%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L+ G+R HA ++ +   P  YL   LI  Y+KC  L  AR++FD+  +R++V+W ++++A
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 134 YSQKAHS-----FEALNLFIRMLRSDTEPNEFTFA-TVLTSCAGAF-----GF-ELGKQI 181
           Y+Q A S      E   LF  +LR      EF F+ T LT           GF ++ + +
Sbjct: 687 YAQFADSSYENVLEGFRLF-GLLR------EFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H   +K  FE  ++V  +L+++Y K G + +AR +F+ +PERD V    ++  Y +    
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +EA+  F      G   ++     V+  ++  + + + ++ H+  ++             
Sbjct: 800 DEALRFFSAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK------------- 844

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKP 360
                      Y+ ++F       + +WN  L  +   G     ++ F  L+R  + +  
Sbjct: 845 ----------AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR--STIGH 892

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DSVT + +LS        D G  + H +V  K  F P +     +++M  +AG V  A +
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQI-HALV-IKSSFAPVVPVSNSLMNMYSKAGVVYAAEK 950

Query: 421 FIKNMP 426
              N P
Sbjct: 951 TFINSP 956



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            + TL+ A      L  G+++HA+++K  Y    ++ T L+  Y KC  + DA ++F +M 
Sbjct: 1203 FATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMD 1262

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGK 179
             R VV W AM+   +Q  H  EALNLF  M  +  +P++ TF  VL++C+ +  F E  K
Sbjct: 1263 VRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYK 1322

Query: 180  QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
               ++         I   S L+D   +AGRI EA  V   +P
Sbjct: 1323 YFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 272 GLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            +A L  GK+ H+ ++   ++P    L N+LI MYSKCGSL  +R+VFD  S+R +++WN
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWN 681

Query: 331 AMLVGYSKHGMGR-----EVVELFNLMREE----NKVKPDSVTYLAVLSGCSHGGMEDRG 381
           ++L  Y++          E   LF L+RE      ++    +  L +LSG         G
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG 741

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
            AV       K GFE ++   G +V++  + G VG+A      MP E  A +   +L A
Sbjct: 742 YAV-------KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/548 (39%), Positives = 345/548 (62%), Gaps = 11/548 (2%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L T L+  Y +   L  AR  FD ++  +VVSW AM +AY Q   S EAL LF RML   
Sbjct: 391 LGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG 450

Query: 155 TEPNEFTFATVLTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
             P+  TF T LT+CA         +GK+I SL+ ++  E    V ++ L+MYAK G + 
Sbjct: 451 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 510

Query: 212 EARGVFECL--PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           +AR VFE +    RD ++  ++++ Y   GL +EA ELF+ ++ E ++  N VT+ +VL 
Sbjct: 511 DARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 570

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTV 326
           A +   ++  G+++H+ V+     S  V+QN+L++MY+KCGSL  ++ +FD  S  +  V
Sbjct: 571 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 630

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           I+W +++ GY+++G     ++LF  M+++  V+P+ VT+++ L+ C+HGG  ++G  +  
Sbjct: 631 IAWTSLIAGYAQYGQAERALKLFWTMQQQG-VRPNHVTFISALTACNHGGKLEQGCELLS 689

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            +     G  P  +H+ C+VD+LGR GR+ EA + ++    +       +LL AC+    
Sbjct: 690 GMTP-DHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKE 747

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           ++ GE   +R+M+++PE A +Y++L+++YA+AGRW +   +R+ M +K +  DPG S +E
Sbjct: 748 LERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVE 807

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           ++Q LH+F A D+SHP  EE+  ++++L    K AGYV D   VL+DV +E KE++L+ H
Sbjct: 808 VNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRH 867

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLA+ FGL+ TP G+P+RVIKNLR+C DCH   K +SKV GR + +RD +R+HH   G
Sbjct: 868 SEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSG 927

Query: 627 TCSCGDYW 634
           TCSCGDYW
Sbjct: 928 TCSCGDYW 935



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 163/324 (50%), Gaps = 16/324 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--- 119
            L+NAC     L  G+R+H+ +    +     L   LI  Y+KC  L DA++ FD +   
Sbjct: 146 ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 205

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSC--AGAFGFE 176
            +R+VV+W AMISA+ +   + EAL LF  M R    P N  TF +VL SC  AG    E
Sbjct: 206 SKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLE 265

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF----ECLPERDVVSCTAII 232
             + IH  I+ +  E   +V ++L+D Y K G + +A  VF    +  P   +V+C+A+I
Sbjct: 266 DVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMI 325

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           S   Q G  +E++ LF  + +EG   + VT  SVL A S L        V    +  E+ 
Sbjct: 326 SACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAM--EVV 383

Query: 293 SYV---VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           S     VL  +L+  Y++   L  +R  FD +    V+SWNAM   Y +H   RE + LF
Sbjct: 384 SATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLF 443

Query: 350 NLMREENKVKPDSVTYLAVLSGCS 373
             M  E  V+P   T++  L+ C+
Sbjct: 444 ERMLLEG-VRPSVATFITALTACA 466



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 175/325 (53%), Gaps = 18/325 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMI--KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           Y  LL AC   R L+ GQR+HAH++  +       +L + LIV + KC  L++A  + D 
Sbjct: 46  YGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD- 104

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
            R  +V S TAMI A+ +     +A+ LF RM   +  PN      ++ +C+       G
Sbjct: 105 -RFASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAAG 160

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGY 235
           ++IHS I   +FE +  +G++L+ MY+K G + +A+  F+ LP   +RDVV+  A+IS +
Sbjct: 161 RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAF 220

Query: 236 AQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIP 292
            + G   EA++LFR +  +G    N VT+ SVL +   +GL +L   + +H  ++   I 
Sbjct: 221 LRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE 280

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVF----DNMSERTVISWNAMLVGYSKHGMGREVVEL 348
               ++ +L+D Y K GSL  +  VF    D     ++++ +AM+    ++G  +E + L
Sbjct: 281 REAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRL 340

Query: 349 FNLMREENKVKPDSVTYLAVLSGCS 373
           F  M  E   KP  VT ++VL+ CS
Sbjct: 341 FFAMNLEG-TKPSGVTLVSVLNACS 364



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 162/294 (55%), Gaps = 23/294 (7%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLII--KSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           T+  +L +C      + G+++H+ I+  + +  +H ++ S L+ M+AK G + EA    E
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEA----E 100

Query: 219 CLPER--DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
            L +R   V SCTA+I  + + G  ++A+ELF +++V     N     +++ A S L  L
Sbjct: 101 ALADRFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVR---PNCHALIALVNACSCLGNL 157

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM---SERTVISWNAML 333
             G+++HS +   +     VL N+LI MYSKCGSL  +++ FD +   S+R V++WNAM+
Sbjct: 158 AAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG---MEDRGLAVFHEIVD 390
             + ++G  RE ++LF  M  +    P+SVT+++VL  C   G   +ED   A+   IV 
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDV-RAIHGRIVG 276

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALE-FIKNMPFEPTAAIL--GSLLGAC 441
              G E E      +VD  G+ G + +A E F++    EP+ +++   +++ AC
Sbjct: 277 A--GIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISAC 328



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 152/294 (51%), Gaps = 17/294 (5%)

Query: 53  GLEMRFEEYDTLLNACVN---QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           G+      + T L AC     Q     G+R+ + + +        +    +  Y KC  L
Sbjct: 450 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 509

Query: 110 SDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
           +DAR +F+ +    R+ ++W +M++AY       EA  LF  M      +PN+ TF  VL
Sbjct: 510 ADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 569

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPERD 224
            +         G++IH+ ++ + FES   + ++LL+MYAK G + +A+ +F+     + D
Sbjct: 570 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 629

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           V++ T++I+GYAQ G  E A++LF  +Q +G+  N+VT+ S LTA +    L  G ++ S
Sbjct: 630 VIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLS 689

Query: 285 HVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            +     P + +L  S     ++D+  +CG L  + ++ +  S+  VI+W A+L
Sbjct: 690 GM----TPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALL 739



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 13/216 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MR 120
            +L+A  ++ ++  G+ +HA ++   +     ++  L+  Y KC  L DA+ +FD+    
Sbjct: 567 AVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 626

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + +V++WT++I+ Y+Q   +  AL LF  M +    PN  TF + LT+C      E G +
Sbjct: 627 QEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCE 686

Query: 181 IHSLIIKSN----FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG-- 234
           + S +   +       H    S ++D+  + GR+ EA  + E   + DV++  A++    
Sbjct: 687 LLSGMTPDHGILPASKHF---SCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACK 743

Query: 235 -YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
              +L   E   E   +L  E + S+Y+  AS+  A
Sbjct: 744 NSKELERGERCAERIMQLDPE-VASSYIVLASMYAA 778


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 346/572 (60%), Gaps = 2/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL AC+ +  L   + +H + ++  ++    +    I  Y KC  L  A  +F  M  +
Sbjct: 421 NLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK 480

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V SW A+I  ++Q     +AL+ +  M R    P++F+  ++L +C      + GK+IH
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH 540

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++++  E + +V  SLL +Y    +    R  FE + +++ V   A++SGY+Q  L  
Sbjct: 541 GFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPN 600

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LFR++  +G+  + +  AS+L A S L+ALG GK+VH   L+  +     +  SL+
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLM 660

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+K G L +S+R+F+ ++ + V SWN M+ G+  HG G + VELF  M+  +K +PD 
Sbjct: 661 DMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDK-QPDR 719

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            T+L VL  C H G+   GL    ++       EPE+EHY CV+DMLGRAGR+ EAL FI
Sbjct: 720 FTFLGVLQACCHAGLVSEGLNYLAQMQTLYK-LEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MP EP A I  SLL +   + ++++GE   ++L+ +E   A +Y++LSNLYA+AG+W+
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  VR+ MK+ ++ KD G SWIEL   +++F A + S+P  +E+     +L  +  E G
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIG 898

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y PD SCVL++++E +K K+L GHSEK+A+ FG + T EG  +R+ KNLRIC DCHN AK
Sbjct: 899 YTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAK 958

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           ++SK   R++ +RD  RFHH  +G CSCGDYW
Sbjct: 959 YISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 189/357 (52%), Gaps = 18/357 (5%)

Query: 31  QNLKTLCSNGQLTKALIEM-------ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAH 83
           + +  LC  G L  AL  +       A   L  R E    LL  C   + +  G+++   
Sbjct: 73  EEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEM 132

Query: 84  M-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
           + + + +     L TRLI  Y+ C    ++R +FD +  +N+  W A++S Y +     E
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 143 ALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           A++ F+ ++  ++ +P+ FTF  ++ +C G     LGK +H + +K      ++VG++++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEGMISN 259
            +Y K G + EA  +F+ +PE++++S  ++I G+++ G   EA   FR L    +G+I +
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             T  ++L   SG   +  G  +H   ++  +   +++ N+LIDMYSKCG L+ +  +F 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMR----EENKVKPDSVTYLAVLSGC 372
            +  ++V+SWN+M+  YS+ G    V E F+L+R    EE  ++ + VT L +L  C
Sbjct: 373 KIENKSVVSWNSMIGAYSREGF---VFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 169/325 (52%), Gaps = 5/325 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  L+ AC  +  +  G+ VH   +K      +++   +I  Y KC  L +A ++FD+M 
Sbjct: 213 FPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP 272

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELG 178
           E+N++SW ++I  +S+     EA   F  +L S     P+  T  T+L  C+G    ++G
Sbjct: 273 EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG 332

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             IH + +K      + V ++L+DMY+K G + EA  +F  +  + VVS  ++I  Y++ 
Sbjct: 333 MVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392

Query: 239 GLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           G   E  +L RK+ +E   M  N VT  ++L A    + L   + +H + LR       +
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKEL 452

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N+ I  Y+KCGSL ++  VF  M+ ++V SWNA++ G++++G   + ++ +  M    
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLG 512

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRG 381
            + PD  + +++L  C   G+   G
Sbjct: 513 -ILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 143/293 (48%), Gaps = 12/293 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   KAL    EM  LG+        +LL AC     L+ G+ +H  +++       ++
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y  C      R  F+ M ++N V W AM+S YSQ     EAL+LF +ML    
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP+E   A++L +C+      LGK++H   +K++     +V  SL+DMYAK+G +  ++ 
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQR 674

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGL 273
           +F  L  ++V S   +I+G+   G   +A+ELF  ++      +  T+  VL A   +GL
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGL 734

Query: 274 AA--LGHGKQVHS-HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            +  L +  Q+ + + L  E+  Y      +IDM  + G L  +    + M E
Sbjct: 735 VSEGLNYLAQMQTLYKLEPELEHYAC----VIDMLGRAGRLNEALNFINEMPE 783



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 153/317 (48%), Gaps = 12/317 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFE---ALNLFIRMLRS----DTEPNEFTFAT 164
           AR    + R  N VS  +++   S+   + +   AL+   R  ++    D    +     
Sbjct: 53  ARTQSHQSRSVNPVSQLSLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGM 112

Query: 165 VLTSCAGAFGFELGKQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +L  C      E+G+++  ++ + S F     + + L+ MY+  G   E+R VF+ L  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           ++    A++SGY +  L +EAI  F +L  V     +  T+  ++ A +G   +  GK V
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H   ++  +   + + N++I +Y KCG L  +  +FD M E+ +ISWN+++ G+S++G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 343 REVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            E    F +L+   + + PD  T + +L  CS  G  D G+ +    V  K G   E+  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV--KLGLVHELMV 350

Query: 402 YGCVVDMLGRAGRVGEA 418
              ++DM  + G + EA
Sbjct: 351 CNALIDMYSKCGCLSEA 367



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   LI MYS CG    SR VFD +  + +  WNA++ GY ++ +  E +  F  +   
Sbjct: 144 VLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV 203

Query: 356 NKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            + +PD+ T+  ++  C+     H G    G+AV       K G   ++     ++ + G
Sbjct: 204 TEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAV-------KMGLIMDLFVGNAMIALYG 256

Query: 411 RAGRVGEALEFIKNMP 426
           + G + EA+E    MP
Sbjct: 257 KCGFLDEAVELFDKMP 272


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 347/606 (57%), Gaps = 34/606 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK------ 114
           Y  L+  C   R L  G++VH H+  + + P + +  RL+  Y KC  L DARK      
Sbjct: 88  YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMP 147

Query: 115 -------------------------MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                                    +FDEM E++  SWTAM++ Y +K    EAL L+  
Sbjct: 148 NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSL 207

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M R  ++ PN FT +  + + A       GK+IH  I+++  +S   + SSL+DMY K G
Sbjct: 208 MQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG 267

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            I EAR +F+ + E+DVVS T++I  Y +     E   LF +L       N  T+A VL 
Sbjct: 268 CIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLN 327

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L     GKQVH ++ R     Y    +SL+DMY+KCG++  ++ V D   +  ++S
Sbjct: 328 ACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVS 387

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W +++ G +++G   E ++ F+L+ +    KPD VT++ VLS C+H G+ ++GL  F+ I
Sbjct: 388 WTSLIGGCAQNGQPDEALKYFDLLLKSG-TKPDHVTFVNVLSACTHAGLVEKGLEFFYSI 446

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + K       +HY C+VD+L R+GR  +    I  MP +P+  +  S+LG C  + N+D
Sbjct: 447 TE-KHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNID 505

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E   Q L +IEPEN   YV ++N+YA+AG+WE+  ++R+ M+E  VTK PG SW E+ 
Sbjct: 506 LAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIK 565

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
           +  H F A+D SHPM  ++   +++L  K KE GYVP  S VL+DV++EQKE+ L+ HSE
Sbjct: 566 RKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSE 625

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F ++ T EG  I+V KNLR CVDCH   KF+S +  RK+++RD  RFH    G C
Sbjct: 626 KLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQC 685

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 686 SCGDYW 691



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 161/326 (49%), Gaps = 36/326 (11%)

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
           +++L    +P   T+  ++  C+     E GK++H  I  S F   I + + LL MYAK 
Sbjct: 74  VQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKC 133

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYV 261
           G + +AR VF+ +P RD+ S   +++GYA++GL EEA +LF ++  +       M++ YV
Sbjct: 134 GSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYV 193

Query: 262 TY-----ASVLTAL---------------------SGLAALGHGKQVHSHVLRFEIPSYV 295
                  A VL +L                     + +  +  GK++H H++R  + S  
Sbjct: 194 KKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDE 253

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL +SL+DMY KCG +  +R +FD + E+ V+SW +M+  Y K    RE   LF+ +   
Sbjct: 254 VLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGS 313

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            + +P+  T+  VL+ C+    E+ G  V   +   + GF+P       +VDM  + G +
Sbjct: 314 CE-RPNEYTFAGVLNACADLTTEELGKQVHGYMT--RVGFDPYSFASSSLVDMYTKCGNI 370

Query: 416 GEALEFIKNMPFEPTAAILGSLLGAC 441
             A   +   P +P      SL+G C
Sbjct: 371 ESAKHVVDGCP-KPDLVSWTSLIGGC 395


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 365/663 (55%), Gaps = 47/663 (7%)

Query: 16  FTQQQLTVPSFP-PNPQNLKTLCS----NGQLTKALIEMATL---GLEMRFEEYDTLLNA 67
           F + Q    + P P+P    TL S     G   +A+   A+L   G++     + T+  A
Sbjct: 82  FRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKA 141

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C         + VH   I+       +L   LI  Y KC+C+  AR++FD++  ++VVSW
Sbjct: 142 CGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSW 201

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           T+M S Y         L +F  M  +  +PN  T +++L +C+     + G+ IH   ++
Sbjct: 202 TSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVR 261

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------------------ 229
                +++V S+L+ +YA+   + +AR VF+ +P RDVVS                    
Sbjct: 262 HGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLAL 321

Query: 230 -----------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
                            A+I G  + G  E+A+E+ RK+Q  G   N +T +S L A S 
Sbjct: 322 FSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSI 381

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L +L  GK+VH +V R  +   +    +L+ MY+KCG L  SR VFD +  + V++WN M
Sbjct: 382 LESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTM 441

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           ++  + HG GREV+ LF  M +   +KP+SVT+  VLSGCSH  + + GL +F+ +   +
Sbjct: 442 IIANAMHGNGREVLLLFESMLQSG-IKPNSVTFTGVLSGCSHSRLVEEGLQIFNSM--GR 498

Query: 393 DGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           D   EP+  HY C+VD+  RAGR+ EA EFI+ MP EPTA+  G+LLGACRV+ NV++ +
Sbjct: 499 DHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAK 558

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
               +L EIEP N GNYV L N+  +A  W + +  R LMKE+ +TK PG SW+++   +
Sbjct: 559 ISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRV 618

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           HTF   D+++   +++   + +L  K K AGY PD   VL D+D+E+K + L  HSEKLA
Sbjct: 619 HTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLA 678

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FG++     + IRV KNLRIC DCHN  K+VSKV G  + +RD  RFHH   G CSC 
Sbjct: 679 VAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQ 738

Query: 632 DYW 634
           D W
Sbjct: 739 DLW 741



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 157/307 (51%), Gaps = 3/307 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           P +L  RL+           A+++FD + + +  + + +ISA++ +    EA+ L+  + 
Sbjct: 65  PSHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLR 124

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               +P+   F TV  +C  +      K++H   I+    S  ++G++L+  Y K   + 
Sbjct: 125 ARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVE 184

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR VF+ L  +DVVS T++ S Y   GL    + +F ++   G+  N VT +S+L A S
Sbjct: 185 GARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS 244

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L  L  G+ +H   +R  +   V + ++L+ +Y++C S+  +R VFD M  R V+SWN 
Sbjct: 245 ELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNG 304

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +L  Y  +    + + LF+ M  +  V+ D  T+ AV+ GC   G  ++ + +  ++ + 
Sbjct: 305 VLTAYFTNREYDKGLALFSQMSSKG-VEADEATWNAVIGGCMENGQTEKAVEMLRKMQNL 363

Query: 392 KDGFEPE 398
             GF+P 
Sbjct: 364 --GFKPN 368


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/610 (38%), Positives = 354/610 (58%), Gaps = 38/610 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--E 118
           +  L+ A   +R    G+ VH   IKT +   V++   LI FY  C  L  A  +F+  E
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
              +++VSW +M++ + Q  +  +AL+LF RM      PN  T  +V+++CA      LG
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++   I ++    ++ V ++ +DM+ K G +  ARG+F+ + +RDVVS T II GYA++
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 239 -------------------------------GLDEEAIELFRKLQV--EGMISNYVTYAS 265
                                          G  +EA+ +FR+LQ+   G   + VT  S
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLS 482

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            L+A + L A+  G+ +H ++ +  I     L  SLIDMYSK G +  +  VF ++  + 
Sbjct: 483 TLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKD 542

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V  W+AM+ G + HG G   +ELF L  +E +VKP+SVT+  +L  CSH G+ D G  +F
Sbjct: 543 VFVWSAMIAGLAMHGRGEAAIELF-LDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLF 601

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
            E+     G  P+ +HY C+VD+LGRAG + EAL+FI+ MP  P+A++ G+LLGAC +H 
Sbjct: 602 DEMERVY-GVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           N+++ E    RL+EIEP N G YV+LSNLYA  G WE V+ +R+ M++  + K+ G S I
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLL 564
           E+D  +H F   D +HP+  ++ AK+ ++  + +  GYV +  C+L  V+EE+ KEK L 
Sbjct: 721 EIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALK 780

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEK+A+ FGLI       IR++KNLR+C DCH  AK VSKVYGR + LRD+ RFHH  
Sbjct: 781 LHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFS 840

Query: 625 EGTCSCGDYW 634
            G CSC DYW
Sbjct: 841 GGHCSCQDYW 850



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 228/452 (50%), Gaps = 51/452 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMR 120
            L   C + + L+   ++HA M++T      Y  + L     ++    L  ARK+FD++ 
Sbjct: 144 ALFQQCTSFKQLK---QIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIP 200

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGK 179
           + N+ SW  +I A +  +   +++ +FIRML  S   PN+FTF  ++ + A    F +GK
Sbjct: 201 QPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGK 260

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQ 237
            +H + IK++F   ++V +SL+  YA  G +  A  VFE +    +D+VS  ++++G+ Q
Sbjct: 261 AVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQ 320

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  ++A++LF +++ EG+  N VT  SV++A +    L  G++V  ++ R E+   + +
Sbjct: 321 GGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNV 380

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK---HGMGREVV-------- 346
            N+ IDM+ KCG +  +R +FDNM +R V+SW  ++ GY+K   HG+ R++         
Sbjct: 381 CNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDI 440

Query: 347 -----------------ELFNLMRE----ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
                            E   + RE    ++  +PD VT L+ LS C+  G  D G  + 
Sbjct: 441 PAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIH 500

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF---IKNMPFEPTAAILGSLLGACR 442
             I   K+  +        ++DM  ++G V +A+E    I N      +A++  L    R
Sbjct: 501 GYIK--KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGR 558

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
               +++  F+  +  +++P    N V  +NL
Sbjct: 559 GEAAIEL--FLDMQETQVKP----NSVTFTNL 584


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 354/601 (58%), Gaps = 27/601 (4%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   + L    +M  LG+++      ++L  C N  TL  G+ VH+  IK+ +   + 
Sbjct: 228 SNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRIN 287

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A ++F++M ERNVVSWT+MI+ Y++   S  A+ L  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG 347

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +     ++L +CA +   + GK +H  I  +N ES+++V ++L+DMY K G +  A 
Sbjct: 348 VKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGAN 407

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D++S   +I    +L  D                    T A +L A + L+
Sbjct: 408 SVFSTMVVKDIISWNTMI---GELKPDSR------------------TMACILPACASLS 446

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GK++H ++LR    S   + N+L+D+Y KCG L  +R +FD +  + ++SW  M+ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIS 506

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG G E +  FN MR+   ++PD V+++++L  CSH G+ ++G   F+ I+     
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY-IMKNDFN 564

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP++EHY C+VD+L R G + +A EFI+ +P  P A I G+LL  CR+++++++ E V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN G YV+L+N+YA A +WE+V R+RE + +K + K+PG SWIE+   ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLF 684

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              ++ SHP  +++ + +K++  K KE GY P     L + DE QKE  L GHSEKLA+ 
Sbjct: 685 VSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P    +RV KNLR+C DCH  AKF+SK   R++ LRD NRFHH   G CSC  +
Sbjct: 745 FGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGF 804

Query: 634 W 634
           W
Sbjct: 805 W 805



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 165/385 (42%), Gaps = 69/385 (17%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R V  + A I  + Q  +   A+ L     +S+ E    T+++VL  CAG+     GK+
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKK 120

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE---------------------- 218
           +HS+I  +N      +G  L+ +YA  G + E R VF+                      
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 219 -----CL-------------PE-----------RDVVSCTAIISGYAQLGLDEEAIELFR 249
                CL             PE           RDV+S  ++ISGY   GL E  +E+++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G+  +  T  SVL   +    L  GK VHS  ++      +   N+L+DMYSKCG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            L  + RVF+ M ER V+SW +M+ GY++ G     + L   M +E  VK D V   ++L
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG-VKLDVVATTSIL 359

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM---- 425
             C+  G  D G  V H+ +   +  E  +     ++DM  + G +  A      M    
Sbjct: 360 HACARSGSLDNGKDV-HDYIKANN-MESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKD 417

Query: 426 ---------PFEPTAAILGSLLGAC 441
                      +P +  +  +L AC
Sbjct: 418 IISWNTMIGELKPDSRTMACILPAC 442


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 341/573 (59%), Gaps = 3/573 (0%)

Query: 63  TLLNACVN-QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           ++L AC + + +   G++VH   +K       ++ T LI  Y+K   + +A  +F     
Sbjct: 403 SVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDG 462

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            ++ SW AM+  ++   +  EAL LF  M     + ++ TFA    +       + GKQI
Sbjct: 463 FDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQI 522

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+++IK  F   ++V S +LDMY K G +  AR VF  +P  D V+ T +ISG  + G +
Sbjct: 523 HAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEE 582

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E+A+  + ++++ G+  +  T+A+++ A S L AL  GKQ+H+++++        +  SL
Sbjct: 583 EQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSL 642

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY+KCG++  +  +F  M+ R+V  WNAM+VG ++HG   E +  FN M+    V PD
Sbjct: 643 VDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRG-VTPD 701

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            VT++ VLS CSH G+       F  +     G EPEIEHY C+VD L RAG + EA + 
Sbjct: 702 RVTFIGVLSACSHSGLTSDAYKNFDSMQKTY-GVEPEIEHYSCLVDALSRAGHIQEAEKV 760

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           + +MPFE +A +  +LL ACRV  + + GE V ++L  ++P ++  YV+LSN+YA+A +W
Sbjct: 761 VSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQW 820

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           E+    R +MK   V K+PG SWI++   +H F A DRSH   + +  KV+ +  + KE 
Sbjct: 821 ENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEE 880

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD    L D++EE KE  L  HSEKLA+ +GL+ TP    +RVIKNLR+C DCHN  
Sbjct: 881 GYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAI 940

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++S V+ R++ LRD NRFHH   G CSCGDYW
Sbjct: 941 KYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 193/380 (50%), Gaps = 4/380 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L+   +   L  G+++H  +++  +   V +    I  Y K   ++ AR+MF +M+
Sbjct: 300 YIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK 359

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGK 179
           E +++SW  +IS  ++      +L LFI +LRS   P++FT  +VL +C+     + +G+
Sbjct: 360 EVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGR 419

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H+  +K+      +V ++L+D+Y+K G++ EA  +F      D+ S  A++ G+    
Sbjct: 420 QVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSD 479

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ LF  +   G  ++ +T+A+   A   L  L  GKQ+H+ V++      + + +
Sbjct: 480 NYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVIS 539

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            ++DMY KCG +  +R+VF+ +     ++W  ++ G  ++G   + +  ++ MR    V+
Sbjct: 540 GILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAG-VQ 598

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD  T+  ++  CS     ++G  +   I+     F+P +     +VDM  + G + +A 
Sbjct: 599 PDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAY 656

Query: 420 EFIKNMPFEPTAAILGSLLG 439
              + M     A     ++G
Sbjct: 657 GLFRRMNTRSVALWNAMIVG 676



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 9/333 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A K+F    + +V  W   +S+Y Q    +EA++ F  M++S    +  T+  +L+  A 
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
               ELGKQIH  +++  ++  + V +S ++MY KAG ++ AR +F  + E D++S   +
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALGHGKQVHSHVLRFE 290
           ISG A+ GL+E ++ LF  L   G++ +  T  SVL A S L  +   G+QVH+  L+  
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAG 429

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           I     +  +LID+YSK G +  +  +F N     + SWNAM+ G++     RE + LF+
Sbjct: 430 IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 351 LMREENKVKPDSVTY--LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           LM E  + K D +T+   A  +GC     + + +   H +V  K  F  ++     ++DM
Sbjct: 490 LMHERGE-KADQITFANAAKAAGCLVRLQQGKQI---HAVV-IKMRFHYDLFVISGILDM 544

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
             + G +  A +    +P  P      +++  C
Sbjct: 545 YLKCGEMKSARKVFNQIP-SPDDVAWTTVISGC 576



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 42/376 (11%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD-- 117
           ++ ++L   +    L  G+R HA ++ +   P  Y+   LI  Y KC  L  ARK+FD  
Sbjct: 15  QWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDIT 74

Query: 118 EMRERNVVSWTAMISAYS--------QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
              +R++V++ A+++AY+        +K H  EA ++F  + +S       T + +   C
Sbjct: 75  PQSDRDLVTYNAILAAYAHTGELHDVEKTH--EAFHIFRLLRQSVMLTTRHTLSPLFKLC 132

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
                    + +    +K   +  ++V  +L+++YAK  RI EAR +F+ +P RDVV   
Sbjct: 133 LLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWN 192

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
            ++  Y ++G  +E + LF      G+  + V+  ++L        +G GK+        
Sbjct: 193 VMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------MGVGKK-------- 236

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                 V +  L  + +      Y+ ++F    +  V  WN  L  Y + G G E V+ F
Sbjct: 237 -----TVFERELEQVRA------YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCF 285

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M  +++V  DS+TY+ +LS  +     + G  +   +V  + G++  +      ++M 
Sbjct: 286 RDMI-KSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV--RFGWDQFVSVANSAINMY 342

Query: 410 GRAGRVGEALEFIKNM 425
            +AG V  A      M
Sbjct: 343 VKAGSVNYARRMFGQM 358



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 28  PNPQNL--KTLCS----NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           P+P ++   T+ S    NG+  +AL    +M   G++     + TL+ AC     L  G+
Sbjct: 562 PSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGK 621

Query: 79  RVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           ++HA+++K  C   P ++ T L+  Y KC  + DA  +F  M  R+V  W AMI   +Q 
Sbjct: 622 QIHANIMKLNCAFDP-FVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQH 680

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHIYV 196
            ++ EALN F  M      P+  TF  VL++C+      +  K   S+      E  I  
Sbjct: 681 GNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEH 740

Query: 197 GSSLLDMYAKAGRIHEARGVFECLP 221
            S L+D  ++AG I EA  V   +P
Sbjct: 741 YSCLVDALSRAGHIQEAEKVVSSMP 765


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 345/548 (62%), Gaps = 11/548 (2%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L T L+  Y +   LS AR  FD ++  +VVSW AM +AY Q     EAL LF RML   
Sbjct: 257 LGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEG 316

Query: 155 TEPNEFTFATVLTSCAG---AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
             P+  TF T LT+CA         +GK+I SL+ ++  E    V ++ L+MYAK G + 
Sbjct: 317 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 376

Query: 212 EARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           +AR VFE +    RD ++  ++++ Y   GL +EA ELF+ ++ E ++  N VT+ +VL 
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLD 436

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTV 326
           A +   ++  G+++H+ V+     S  V+QN+L++MY+KCGSL  ++ +FD  S  +  V
Sbjct: 437 ASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 496

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           I+W +++ GY+++G     ++LF  M+++  V+P+ +T+++ L+ C+HGG  ++G  +  
Sbjct: 497 IAWTSLVAGYAQYGQAERALKLFWTMQQQG-VRPNHITFISALTACNHGGKLEQGCELLS 555

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            +     G  P  +H+ C+VD+LGR GR+ EA + ++    +       +LL AC+    
Sbjct: 556 GMTP-DHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKE 613

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           ++ GE   +R+M+++PE A +Y++L+++YA+AGRW +   +R+ M +K +  DPG S +E
Sbjct: 614 LERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVE 673

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           ++Q LH+F A D+SHP  EE+  ++++L    K AGYV D   VL+DV +E KE++L+ H
Sbjct: 674 VNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRH 733

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEKLA+ FGL+ TP G+P+RVIKNLR+C DCH   K +SKV GR + +RD +R+HH   G
Sbjct: 734 SEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSG 793

Query: 627 TCSCGDYW 634
           TCSCGDYW
Sbjct: 794 TCSCGDYW 801



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 163/323 (50%), Gaps = 16/323 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM---R 120
           L+NAC     L  G+R+H+ +    +     L   LI  Y+KC  L DA++ FD +    
Sbjct: 13  LVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRAS 72

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSC--AGAFGFEL 177
           +R+VV+W AMISA+ +   + EAL LF  M      P N  TF +VL SC  AG    E 
Sbjct: 73  KRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLED 132

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF----ECLPERDVVSCTAIIS 233
            + IH  I+ +  E   +V ++L+D Y K G + +A  VF    +  P   +V+C+A+IS
Sbjct: 133 VRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMIS 192

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
              Q G  +E++ LF  + +EG   + VT  SVL A S L        V    +  E+ S
Sbjct: 193 ACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAM--EVVS 250

Query: 294 YV---VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
                VL  +L+  Y++   L+ +R  FD +    V+SWNAM   Y +H   RE + LF 
Sbjct: 251 ATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFE 310

Query: 351 LMREENKVKPDSVTYLAVLSGCS 373
            M  E  V+P   T++  L+ C+
Sbjct: 311 RMLLEG-VRPSVATFITALTACA 332



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 152/294 (51%), Gaps = 17/294 (5%)

Query: 53  GLEMRFEEYDTLLNACVN---QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
           G+      + T L AC     Q     G+R+ + + +        +    +  Y KC  L
Sbjct: 316 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 375

Query: 110 SDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
           +DAR +F+ +    R+ ++W +M++AY       EA  LF  M      +PN+ TF  VL
Sbjct: 376 ADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 435

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPERD 224
            +         G++IH+ ++ + FES   + ++LL+MYAK G + +A+ +F+     + D
Sbjct: 436 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 495

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           V++ T++++GYAQ G  E A++LF  +Q +G+  N++T+ S LTA +    L  G ++ S
Sbjct: 496 VIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLS 555

Query: 285 HVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            +     P + ++  S     ++D+  +CG L  + ++ +  S+  VI+W A+L
Sbjct: 556 GM----TPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALL 605



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +  PN      ++ +C+       G++IHS I   +FE +  +G++L+ MY+K G + +A
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 214 RGVFECLP---ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTA 269
           +  F+ LP   +RDVV+  A+IS + + G   EA++LFR +  +G    N VT+ SVL +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 270 L--SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF----DNMSE 323
              +GL +L   + +H  ++   I     ++ +L+D Y K GSL  +  VF    D    
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
            ++++ +AM+    ++G  +E + LF  M  E   KP  VT ++VL+ CS
Sbjct: 182 TSLVTCSAMISACWQNGWPQESLRLFYAMNLEG-TKPSGVTLVSVLNACS 230



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 12/186 (6%)

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--- 321
           +++ A S L  L  G+++HS +   +     VL N+LI MYSKCGSL  +++ FD +   
Sbjct: 12  ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 71

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG---ME 378
           S+R V++WNAM+  + ++G  RE ++LF  M  +    P+SVT+++VL  C   G   +E
Sbjct: 72  SKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLE 131

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE-FIKNMPFEPTAAIL--G 435
           D   A+   IV    G E E      +VD  G+ G + +A E F++    EP+ +++   
Sbjct: 132 DV-RAIHGRIVGA--GIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCS 188

Query: 436 SLLGAC 441
           +++ AC
Sbjct: 189 AMISAC 194



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 19/218 (8%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MRE 121
           +L+A  ++ ++  G+ +HA ++   +     ++  L+  Y KC  L DA+ +FD+    +
Sbjct: 434 VLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQ 493

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            +V++WT++++ Y+Q   +  AL LF  M +    PN  TF + LT+C      E G ++
Sbjct: 494 EDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCEL 553

Query: 182 -------HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
                  H ++  S    H    S ++D+  + GR+ EA  + E   + DV++  A++  
Sbjct: 554 LSGMTPDHGIVPASK---HF---SCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDA 607

Query: 235 ---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                +L   E   E   +L  E + S+Y+  AS+  A
Sbjct: 608 CKNSKELERGERCAERIMQLDPE-VASSYIVLASMYAA 644


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/562 (40%), Positives = 339/562 (60%), Gaps = 7/562 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+R+H+ +    +      +  L+  Y KC CL +AR +F+ + ER VVSW+AMI AY+ 
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 137 KAHSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN--FES 192
                EAL LF RM R+D   EPN  TF  V  +C      E G++IH+L + S     S
Sbjct: 64  HGRGQEALLLFHRM-RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +  + ++LL+MY + G + EAR VF+ +   D  S T++I+   +     EA+ELF ++ 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
           +EG+    VT ASVL A +   AL  GKQ+HS +      S V+ Q +L+DMY+KCGSL 
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            S +VF  M  R  +SW AM+   ++HG G E +ELF  M  E  V  D+ T++ VL  C
Sbjct: 243 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMV-ADATTFICVLRAC 301

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           SH G+    L  FH +V+      P   HY   +D +GRAGR+ +A E I +MPF P   
Sbjct: 302 SHAGLIKESLEFFHSMVE-DYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
              +LL ACR+H   +    V + L ++ PE++  Y +L N+YA+ GR+ D  RVR+ M 
Sbjct: 361 TWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMT 420

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           ++ + K PG+S+IE+   +H F A DR+HP R+E+  ++++L  + +EAGYVP+   VL+
Sbjct: 421 DRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
            V+EE+KE+++  HSEKLA+ FGLI TP G P+ ++KNLR+C DCH   K ++K+  R++
Sbjct: 481 AVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 540

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD +RFHH  +G CSC DYW
Sbjct: 541 VVRDTHRFHHFEDGQCSCKDYW 562



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            E G++IHS +    F       + L+ MYAK G + EAR +F  + ER VVS +A+I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 235 YAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIP 292
           YA  G  +EA+ LF +++ +G +  N +T+  V  A   +  L  G+++H+  +   E+ 
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 293 SY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
           S   +L+N+L++MY +CGSL  +R+VFD M      SW +M+   +++    E +ELF+ 
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M  E  + P SVT  +VL+ C+  G    G  + H  +D   GF   +     ++DM  +
Sbjct: 181 MNLEG-IPPTSVTLASVLNACACSGALKVGKQI-HSRLD-ASGFHSSVLAQTALLDMYAK 237

Query: 412 AGRV 415
            G +
Sbjct: 238 CGSL 241



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++LNAC     L+ G+++H+ +  + +   V  +T L+  Y KC  L  + K+F  M  R
Sbjct: 195 SVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETR 254

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           N VSWTAMI+A +Q     EAL LF  M       +  TF  VL +C+ A   +   +  
Sbjct: 255 NSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFF 314

Query: 182 HSLI---IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           HS++     +  E+H       LD   +AGR+ +A  +   +P
Sbjct: 315 HSMVEDYAIAPTETHY---CRALDTIGRAGRLQDAEELIHSMP 354


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 340/554 (61%), Gaps = 3/554 (0%)

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           HA  I++     V + T ++  Y KC  +  AR +FD M  +N VSW AMI  Y+Q   S
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
            EAL LF RM+    +  + +    L +C      + G ++H L+++   +S++ V ++L
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           + MY+K  R+  A  VF+ L  R  VS  A+I G AQ G  E+A+ LF ++Q+E +  + 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T  SV+ AL+ ++     + +H + +R  +   V +  +LIDMY+KCG +  +R +F++
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
             ER VI+WNAM+ GY  HG G+  VELF  M+    V P+  T+L+VLS CSH G+ D 
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV-PNETTFLSVLSACSHAGLVDE 482

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G   F  + +   G EP +EHYG +VD+LGRAG++ EA  FI+ MP +P  ++ G++LGA
Sbjct: 483 GREYFTSMKE-DYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA 541

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           C++H NV++ E   Q++ E+ P+    +V+L+N+YA+A  W+DV RVR  M++  + K P
Sbjct: 542 CKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTP 601

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G S I+L   +HTF++   +H   +E+ +++ +L  + K  GYVPD   + +DV+++ K 
Sbjct: 602 GWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKA 660

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
           ++L  HSEKLA+ FGLI T  G  I++ KNLR+C DCHN  K +S V GR++ +RD  RF
Sbjct: 661 QLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRF 720

Query: 621 HHIVEGTCSCGDYW 634
           HH  +G CSCGDYW
Sbjct: 721 HHFKDGKCSCGDYW 734



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 196/375 (52%), Gaps = 4/375 (1%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A + M++ G       + +LL  C  +  L  G+ VHA +            T L   Y 
Sbjct: 46  AFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA 105

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFA 163
           KC   +DAR++FD M  R+ V+W A+++ Y++   +  A+ + +RM   + E P+  T  
Sbjct: 106 KCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV 165

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +VL +CA A      ++ H+  I+S  E  + V +++LD Y K G I  AR VF+ +P +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           + VS  A+I GYAQ G   EA+ LF ++  EG+    V+  + L A   L  L  G +VH
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
             ++R  + S V + N+LI MYSKC  +  +  VFD +  RT +SWNAM++G +++G   
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE 345

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           + V LF  M+ EN VKPDS T ++V+   +   + D   A +      +   + ++    
Sbjct: 346 DAVRLFTRMQLEN-VKPDSFTLVSVIPALAD--ISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 404 CVVDMLGRAGRVGEA 418
            ++DM  + GRV  A
Sbjct: 403 ALIDMYAKCGRVNIA 417



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 159/318 (50%), Gaps = 8/318 (2%)

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           A + A + ++    AL  F+ M  +   P   TF ++L  CA       G+ +H+ +   
Sbjct: 29  ARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
             +S     ++L +MYAK  R  +AR VF+ +P RD V+  A+++GYA+ GL   A+E+ 
Sbjct: 89  GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMV 148

Query: 249 RKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
            ++Q  EG   + +T  SVL A +   AL   ++ H+  +R  +   V +  +++D Y K
Sbjct: 149 VRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCK 208

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG +  +R VFD M  +  +SWNAM+ GY+++G  RE + LFN M EE  V    V+ LA
Sbjct: 209 CGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG-VDVTDVSVLA 267

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL----EFIK 423
            L  C   G  D G+ V HE++  + G +  +     ++ M  +  RV  A     E  +
Sbjct: 268 ALQACGELGCLDEGMRV-HELL-VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 424 NMPFEPTAAILGSLLGAC 441
                  A ILG     C
Sbjct: 326 RTQVSWNAMILGCAQNGC 343


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 355/603 (58%), Gaps = 38/603 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRER 122
           L++C     L+   + H+ +I+           R+I F   +K   L+ A ++FD++   
Sbjct: 27  LDSCSTMAELK---QYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHP 83

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +   +  +   Y +   +   + ++ RML     PN+FT+  ++ +C   +  E GKQIH
Sbjct: 84  DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIH 143

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++K  F +  +  ++L+ MY     + +AR VF+ +P+RDVVS T++I+GY+Q G  +
Sbjct: 144 AHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVD 203

Query: 243 -------------------------------EAIELFRKLQVEGMISNYVTYASVLTALS 271
                                          EA  LF ++++E ++ +    AS+L+A +
Sbjct: 204 KAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACT 263

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           GL AL  GK +H ++ +  I     L  ++IDMY KCG L  +  VF+ + ++ + SWN 
Sbjct: 264 GLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNC 323

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G + HG G   +ELF  M  E  V PD +T++ VLS C+H G+ + G   F  + + 
Sbjct: 324 MIGGLAMHGKGEAAIELFKEMERE-MVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEV 382

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G +P +EH+GC+VD+LGRAG + EA + I  MP  P A +LG+L+GACR+H N ++GE
Sbjct: 383 L-GLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGE 441

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            +G++++E+EP N+G YV+L+NLYASAGRWEDV +VR+LM ++ V K PG S IE +  +
Sbjct: 442 QIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGV 501

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
             F A  R+HP  +E+ AK+ ++    +  GYVPD   VL+D+DEE+KE  L  HSEKLA
Sbjct: 502 DEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLA 561

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+ T  G  +R+ KNLRIC DCH  +K +SKVY R++ +RD+NRFHH   G CSC 
Sbjct: 562 IAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCK 621

Query: 632 DYW 634
           DYW
Sbjct: 622 DYW 624



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 159/330 (48%), Gaps = 44/330 (13%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+ AC     +  G+++HAH++K  +    +    LI  Y   + L  AR++FD M 
Sbjct: 123 YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 182

Query: 121 ERNVVSWTAMISAYSQ-----KAHSF--------------------------EALNLFIR 149
           +R+VVSWT++I+ YSQ     KA                             EA  LF R
Sbjct: 183 QRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDR 242

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M   +   ++F  A++L++C G    E GK IH  I KS  E    + ++++DMY K G 
Sbjct: 243 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 302

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +A  VF  LP++ + S   +I G A  G  E AIELF++++ E +  + +T+ +VL+A
Sbjct: 303 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 362

Query: 270 L--SGLAALG-HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
              SGL   G H  Q  + VL  + P        ++D+  + G L  +R++ + M     
Sbjct: 363 CAHSGLVEEGKHYFQYMTEVLGLK-PGMEHF-GCMVDLLGRAGLLEEARKLINEMPVNPD 420

Query: 327 ISWNAMLVGYSK-HG-------MGREVVEL 348
                 LVG  + HG       +G++V+EL
Sbjct: 421 AGVLGALVGACRIHGNTELGEQIGKKVIEL 450


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 355/602 (58%), Gaps = 33/602 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL        L+ G+ +  H +K  +   ++++   I  ++ C  +  ARK+FD      
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE 172

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VV+W  M+S Y++     ++  LFI M +    PN  T   +L++C+     E GK I+ 
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG---- 239
            I     E ++ + + L+DM+A  G + EA+ VF+ +  RDV+S T+I++G+A +G    
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292

Query: 240 ----LDE-----------------------EAIELFRKLQVEGMISNYVTYASVLTALSG 272
                D+                       EA+ LFR++Q+  +  +  T  S+LTA + 
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L AL  G+ V +++ +  I +   + N+LIDMY KCG++  +++VF  M  +   +W AM
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +VG + +G G E + +F+ M E + + PD +TY+ VL  C+H GM ++G + F  +   +
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEAS-ITPDEITYIGVLCACTHAGMVEKGQSFFISMT-MQ 470

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
            G +P + HYGC+VD+LGRAGR+ EA E I NMP +P + + GSLLGACRVH NV + E 
Sbjct: 471 HGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEM 530

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             ++++E+EPEN   YV+L N+YA+  RWE++ +VR+LM E+ + K PG S +EL+  ++
Sbjct: 531 AAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D+SHP  +E+ AK++ +     +AGY PD S V  D+ EE KE  L  HSEKLA+
Sbjct: 591 EFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAI 650

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            + LI +  G  IR++KNLR+CVDCH+ AK VS+ Y R++ +RDK RFHH   G+CSC +
Sbjct: 651 AYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNN 710

Query: 633 YW 634
           +W
Sbjct: 711 FW 712



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 201/410 (49%), Gaps = 43/410 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMR 120
           +LL  C +   L+   ++H+H IK         + R+I F    E   +  AR++FD + 
Sbjct: 12  SLLEKCKSMYQLK---QIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +  +  W  MI  YS+  H    +++++ ML S+ +P+ FTF  +L         + GK 
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           + +  +K  F+S+++V  + + M++    +  AR VF+     +VV+   ++SGY ++  
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            +++  LF +++  G+  N VT   +L+A S L  L  GK ++ ++    +   ++L+N 
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-------------------- 340
           LIDM++ CG +  ++ VFDNM  R VISW +++ G++  G                    
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW 308

Query: 341 ---------MGR--EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
                    M R  E + LF  M+  N VKPD  T +++L+ C+H G  + G  V    +
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSN-VKPDEFTMVSILTACAHLGALELGEWV-KTYI 366

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILG 435
           D K+  + +      ++DM  + G VG+A +  K M     F  TA I+G
Sbjct: 367 D-KNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVG 415



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 33/321 (10%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            IEM   G+         +L+AC   + L GG+ ++ ++        + L   LI  +  
Sbjct: 196 FIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAA 255

Query: 106 CECLSDARKMFDEMRERNV-------------------------------VSWTAMISAY 134
           C  + +A+ +FD M+ R+V                               VSWTAMI  Y
Sbjct: 256 CGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGY 315

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
            +     EAL LF  M  S+ +P+EFT  ++LT+CA     ELG+ + + I K++ ++  
Sbjct: 316 LRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDT 375

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG++L+DMY K G + +A+ VF+ +  +D  + TA+I G A  G  EEA+ +F  +   
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            +  + +TY  VL A +    +  G+    S  ++  I   V     ++D+  + G L  
Sbjct: 436 SITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495

Query: 314 SRRVFDNMSER-TVISWNAML 333
           +  V  NM  +   I W ++L
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLL 516


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 336/579 (58%), Gaps = 36/579 (6%)

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           +    + P V     +I  Y + E + +A  +F+ M  RN +SW  MI+ Y++   S +A
Sbjct: 343 LFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQA 402

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           L     + R    P+  +  +   +C+     E GKQ+HSL +K+  + + YV ++L+ +
Sbjct: 403 LVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITL 462

Query: 204 YAKAGRI-------------------------------HEARGVFECLPERDVVSCTAII 232
           Y K   I                                EAR VF  +P  DVVS T II
Sbjct: 463 YGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTII 522

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG-LAALGHGKQVHSHVLRFEI 291
           S  AQ     EA+E+FR +  E  + N     ++L  LSG L A   G+Q+H+  ++  +
Sbjct: 523 SACAQADQGNEAVEIFRSMLHERELPN-PPILTILLGLSGNLGAPQLGQQIHTIAIKLGM 581

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S +V+ N+L+ MY KC S   S +VFD+M ER + +WN ++ GY++HG+GRE + ++ L
Sbjct: 582 DSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQL 640

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M     V P+ VT++ +L  CSH G+ D G   F  +     G  P +EHY C+VD+LGR
Sbjct: 641 MVSAG-VLPNEVTFVGLLHACSHSGLVDEGHQFFKSM-SSDYGLTPLLEHYACMVDLLGR 698

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
           AG V  A  FI +MP EP + I  +LLGAC++H NV+IG    ++L  IEP NAGNYV+L
Sbjct: 699 AGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVML 758

Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV 531
           SN+Y+S G W++V +VR+LMKE+ V KDPG SW+++   +H+F   D  H   + + A +
Sbjct: 759 SNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATL 818

Query: 532 KQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
            +L    K  GYVPD   VL+D+DEEQKE  LL HSEKLA+ +GL+ TP+G PI+++KNL
Sbjct: 819 WELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNL 878

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           RIC DCH F KFVS V  R++ +RD NRFHH   G+CSC
Sbjct: 879 RICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 45/355 (12%)

Query: 39  NGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL+ +  L   G+        +   AC N   L  G++VH+  +K   +   Y+
Sbjct: 396 NGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYV 455

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRER-------------------------------NV 124
              LI  Y K   +   R++FD M  +                               +V
Sbjct: 456 CNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDV 515

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHS 183
           VSWT +ISA +Q     EA+ +F  ML     PN     T+L   +G  G  +LG+QIH+
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSMLHERELPNP-PILTILLGLSGNLGAPQLGQQIHT 574

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + IK   +S + V ++L+ MY K       + VF+ + ERD+ +   II+GYAQ GL  E
Sbjct: 575 IAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQHGLGRE 633

Query: 244 AIELFRKLQVEGMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           AI +++ +   G++ N VT+  +L A   SGL   GH +   S    + +   +     +
Sbjct: 634 AIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGH-QFFKSMSSDYGLTPLLEHYACM 692

Query: 302 IDMYSKCGSLTYSRR-VFDNMSERTVISWNAMLVGYSKHG---MGREVVE-LFNL 351
           +D+  + G +  +   ++D   E   + W+A+L     H    +GR   E LF++
Sbjct: 693 VDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSI 747



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 170/414 (41%), Gaps = 108/414 (26%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y   + + +AR +F+ M ERN VSWT MIS Y        A ++F  ML     P 
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPE 222

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK------------ 206
           +    +VL++        + + IH L+ K+ FE  + VG+++L+ Y K            
Sbjct: 223 QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFF 282

Query: 207 --------------------AGRIHEARGVFECLP------------------------- 221
                               AGRI +A  V++  P                         
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKI 342

Query: 222 ------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------GMISNYVTYASVLTA 269
                 E +VVS  A+I+GY Q  + +EA +LF ++         GMI+ Y        A
Sbjct: 343 LFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQA 402

Query: 270 L-------------------------SGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLI 302
           L                         S + AL  GKQVHS  ++   +  SYV   N+LI
Sbjct: 403 LVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVC--NALI 460

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            +Y K  S+   R++FD M+ +  +S+N+ +    ++ +  E  ++FN     N   PD 
Sbjct: 461 TLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFN-----NMPSPDV 515

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           V++  ++S C+     +  + +F  ++  ++   P I     +  +LG +G +G
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPI-----LTILLGLSGNLG 564



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 150/351 (42%), Gaps = 53/351 (15%)

Query: 95  LRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           LRT  I+   Y +   + DAR++FD M  RN V+W AM++ Y Q      A  LF  M  
Sbjct: 95  LRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
            D      ++ T+LT                           Y  S L++         E
Sbjct: 155 RDVS----SWNTMLTG--------------------------YCHSQLME---------E 175

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +FE +PER+ VS T +ISGY  +     A ++FR +  EGM        SVL+A+  
Sbjct: 176 ARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRH 235

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK-CGSLTYSRRVFDNMSERTVISWNA 331
           L   G  + +H  V +      VV+  ++++ Y+K    L  + + F+ M+ R   +W+ 
Sbjct: 236 LGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWST 295

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++   S+ G   +   ++   R+  K  P   +   +L+G +  G  D    +F +I   
Sbjct: 296 IIAALSQAGRIDDAFAVYQ--RDPLKSVPSRTS---MLTGLARYGRIDDAKILFDQI--- 347

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
               EP +  +  ++    +   V EA +    MPF  T +  G + G  R
Sbjct: 348 ---HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYAR 395



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            + GR+HEAR VF+ +P RD+++  ++I  Y   G+ +    L      + +    +   
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSL-----ADAISGGNLRTG 98

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           ++L  LSG A  G  +     V         V  N+++  Y + G +T +R++FD M  R
Sbjct: 99  TIL--LSGYARAGRVRDAR-RVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR 155

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V SWN ML GY    +  E   LF  M E N      V++  ++SG        R   +
Sbjct: 156 DVSSWNTMLTGYCHSQLMEEARNLFERMPERN-----GVSWTVMISGYVLIEQHGRAWDM 210

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           F  ++ C +G  PE  +   V+  +   G+ G
Sbjct: 211 FRTML-C-EGMTPEQPNLVSVLSAVRHLGKPG 240


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 357/602 (59%), Gaps = 9/602 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRL 99
           +  + L +M  LG+      + + L AC     L  G+ +HA++IK        ++ + L
Sbjct: 102 EAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASAL 161

Query: 100 IVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTE 156
           +  Y   E +  AR++FD + +  + +  W AMI  Y+Q     EAL LF RM   +   
Sbjct: 162 VDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFV 221

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P E T A+VL +CA +  F   + +H  ++K     + +V ++L+DMYA+ G+   AR +
Sbjct: 222 PCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRI 281

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV---EGMISNYVTYASVLTALSGL 273
           F  +   DVVS   +I+G    G   +A +L R++Q     G++ N +T  ++L   + L
Sbjct: 282 FAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAIL 341

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           AA   GK++H + +R  + + V + ++L+DMY+KCG L  SR VFD +  R  I+WN ++
Sbjct: 342 AAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLI 401

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           + Y  HG+G E   LF+ M    + +P+ VT++A L+ CSH GM DRGL +FH + +   
Sbjct: 402 MAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAM-ERDH 460

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEF 452
           G EP  +   CVVD+LGRAGR+ EA   + +M   E   +   ++LGACR+H NV +GE 
Sbjct: 461 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEI 520

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
            G+RL+E+EPE A +YV+L N+Y++AG+W     VR  M+ + V K+PG SWIE+D  +H
Sbjct: 521 AGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIH 580

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A + +HP  EE+ A ++ L  +    GY PD SCVL+D+D+  K  VL  HSEKLA+
Sbjct: 581 RFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAI 640

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGL+    GA IRV KNLR+C DCH  AKF+SK+ GR++ LRD  RFHH   G CSCGD
Sbjct: 641 AFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGD 700

Query: 633 YW 634
           YW
Sbjct: 701 YW 702



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 188/376 (50%), Gaps = 28/376 (7%)

Query: 73  TLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWT 128
            +R G+  HA  +K    +    +    L+  Y +   ++DA+++F        +VV+W 
Sbjct: 29  AVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWN 88

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            M+S   Q     EA+     M+     P+  TFA+ L +C+     ++G+++H+ +IK 
Sbjct: 89  TMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD 148

Query: 189 N-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAI 245
           +   ++ +V S+L+DMYA   ++ +AR VF+ +P+  + +    A+I GYAQ G+DEEA+
Sbjct: 149 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 208

Query: 246 ELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            LF +++ E G +    T ASVL A +   A    + VH +V++  +     +QN+L+DM
Sbjct: 209 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 268

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-----EENKVK 359
           Y++ G    +RR+F  +    V+SWN ++ G    G    V + F L R     EE  V 
Sbjct: 269 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG---HVADAFQLAREMQQLEEGGVV 325

Query: 360 PDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           P+++T + +L GC+       G E  G AV H +       + ++     +VDM  + G 
Sbjct: 326 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHAL-------DTDVAVGSALVDMYAKCGC 378

Query: 415 VGEALEFIKNMPFEPT 430
           +  +      +P   T
Sbjct: 379 LALSRAVFDRLPRRNT 394


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 341/546 (62%), Gaps = 2/546 (0%)

Query: 90  RPPVYLRTRLIVF-YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           R   Y+ + +++  Y +   L +ARK+FDEM +R + +W AMI+   Q   + E L+LF 
Sbjct: 21  RKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFR 80

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            M      P+E+T  +V +  AG     +G+QIH   IK   E  + V SSL  MY + G
Sbjct: 81  EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNG 140

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           ++ +   V   +P R++V+   +I G AQ G  E  + L++ +++ G   N +T+ +VL+
Sbjct: 141 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 200

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           + S LA  G G+Q+H+  ++    S V + +SLI MYSKCG L  + + F    +   + 
Sbjct: 201 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 260

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W++M+  Y  HG G E +ELFN M E+  ++ + V +L +L  CSH G++D+GL +F  +
Sbjct: 261 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 320

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V+ K GF+P ++HY CVVD+LGRAG + +A   I++MP +    I  +LL AC +H N +
Sbjct: 321 VE-KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAE 379

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + + V + +++I+P ++  YV+L+N++ASA RW DV+ VR+ M++K V K+ G SW E  
Sbjct: 380 MAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHK 439

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F   DRS    +E+ + +K+L+++ K  GY PD + VL+D+DEE+KE  L+ HSE
Sbjct: 440 GEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSE 499

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F L+  PEGAPIR+IKNLR+C DCH   K++S +  R+++LRD +RFHH + G C
Sbjct: 500 KLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKC 559

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 560 SCGDYW 565



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 146/323 (45%), Gaps = 7/323 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG         ++ +     R++  GQ++H + IK      + + + L   Y +  
Sbjct: 81  EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNG 140

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L D   +   M  RN+V+W  +I   +Q       L L+  M  S   PN+ TF TVL+
Sbjct: 141 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 200

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SC+       G+QIH+  IK    S + V SSL+ MY+K G + +A   F    + D V 
Sbjct: 201 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 260

Query: 228 CTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
            +++IS Y   G  +EAIELF  + +   M  N V + ++L A S       G ++   +
Sbjct: 261 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 320

Query: 287 L-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGRE 344
           + ++     +     ++D+  + G L  +  +  +M  +T ++ W  +L   + H     
Sbjct: 321 VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEM 380

Query: 345 VVELFNLMREENKVKP-DSVTYL 366
              +F   +E  ++ P DS  Y+
Sbjct: 381 AQRVF---KEILQIDPNDSACYV 400



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 117/249 (46%), Gaps = 34/249 (13%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG--------------------- 239
           + MY+K G    A  V+  + +++ +S   +I+GY + G                     
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 240 ----------LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
                      +EE + LFR++   G   +  T  SV +  +GL ++  G+Q+H + +++
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKY 120

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            +   +V+ +SL  MY + G L     V  +M  R +++WN +++G +++G    V+ L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
            +M+     +P+ +T++ VLS CS   +  +G  +  E +  K G    +     ++ M 
Sbjct: 181 KMMKISG-CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMY 237

Query: 410 GRAGRVGEA 418
            + G +G+A
Sbjct: 238 SKCGCLGDA 246


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/598 (37%), Positives = 359/598 (60%), Gaps = 13/598 (2%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G E       ++ +AC     L  G+++H+  I++     V     L+  Y K
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAK 314

Query: 106 CEC---LSDARKMFDEMRERNVVSWTAMISAYSQKAH-SFEALNLFIRML-RSDTEPNEF 160
           C     + D RK+FD M + +V+SWTA+I+ Y +  + + EA+NLF  M+ +   EPN F
Sbjct: 315 CSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHF 374

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TF++   +C       +GKQ+     K    S+  V +S++ M+ K+ R+ +A+  FE L
Sbjct: 375 TFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            E+++VS    + G  +    E+A +L  ++    +  +  T+AS+L+ ++ + ++  G+
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           Q+HS V++  +     + N+LI MYSKCGS+  + RVF+ M  R VISW +M+ G++KHG
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
               V+E FN M EE  VKP+ VTY+A+LS CSH G+   G   F+ + +     +P++E
Sbjct: 555 FAIRVLETFNQMIEEG-VKPNEVTYVAILSACSHVGLVSEGWRHFNSMYE-DHKIKPKME 612

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C+VD+L RAG + +A EFI  MPF+    +  + LGACRVH N ++G+   ++++E+
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           +P     Y+ LSN+YA AG+WE+ T +R  MKE+ + K+ G SWIE+   +H F+  D +
Sbjct: 673 DPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTA 732

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV----DEEQKEKVLLGHSEKLALTFGL 576
           HP   ++  ++ +L  + K  GYVPD   VL+ +    DE +KE++L  HSEK+A+ FGL
Sbjct: 733 HPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGL 792

Query: 577 IGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I T +  P+RV KNLR+C DCHN  K++S V GR++ LRD NRFHH  +G CSC DYW
Sbjct: 793 ISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 208/408 (50%), Gaps = 14/408 (3%)

Query: 45  ALIEMATLGLE-MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           AL  MA  G+  M    + +LL +C+  R  R G+ VHA +I+    P   L   LI  Y
Sbjct: 48  ALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLY 107

Query: 104 NKCECLSDARKMFDEMR---ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
           +K    + A  +F+ MR   +R+VVSW+AM++ Y       +A+ +F+  L     PN++
Sbjct: 108 SKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDY 167

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHE-ARGVFE 218
            +  V+ +C+ +    +G+     ++K+ +FES + VG SL+DM+ K     E A  VF+
Sbjct: 168 CYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFD 227

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + E +VV+ T +I+   Q+G   EAI  F  + + G  S+  T +SV +A + L  L  
Sbjct: 228 KMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSL 287

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKC---GSLTYSRRVFDNMSERTVISWNAMLVG 335
           GKQ+HS  +R  +   V  + SL+DMY+KC   GS+   R+VFD M + +V+SW A++ G
Sbjct: 288 GKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITG 345

Query: 336 YSKH-GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           Y K+  +  E + LF+ M  +  V+P+  T+ +    C +      G  V  +    K G
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF--KRG 403

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
                     V+ M  ++ R+ +A    +++  +   +    L G CR
Sbjct: 404 LASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 212/439 (48%), Gaps = 17/439 (3%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVF 102
           K  +E   LGL      Y  ++ AC N   +  G+     ++KT  +   V +   LI  
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 103 YNKCE-CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
           + K E    +A K+FD+M E NVV+WT MI+   Q     EA+  F+ M+ S  E ++FT
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA---GRIHEARGVFE 218
            ++V ++CA      LGKQ+HS  I+S       V  SL+DMYAK    G + + R VF+
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFD 329

Query: 219 CLPERDVVSCTAIISGYAQ-LGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAAL 276
            + +  V+S TA+I+GY +   L  EAI LF ++  +G +  N+ T++S   A   L+  
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             GKQV     +  + S   + NS+I M+ K   +  ++R F+++SE+ ++S+N  L G 
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 337 SKHGMGREVVELFNLMRE--ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            ++       + F L+ E  E ++   + T+ ++LSG ++ G   +G  +  ++V  K G
Sbjct: 450 CRN---LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV--KLG 504

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
                     ++ M  + G +  A      M      +    + G  +  + + + E   
Sbjct: 505 LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFN 564

Query: 455 QRLME-IEPENAGNYVILS 472
           Q + E ++P       ILS
Sbjct: 565 QMIEEGVKPNEVTYVAILS 583


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 341/546 (62%), Gaps = 2/546 (0%)

Query: 90  RPPVYLRTRLIVF-YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           R   Y+ + +++  Y +   L +ARK+FDEM +R + +W AMI+   Q   + E L+LF 
Sbjct: 19  RKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFR 78

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            M      P+E+T  +V +  AG     +G+QIH   IK   E  + V SSL  MY + G
Sbjct: 79  EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNG 138

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           ++ +   V   +P R++V+   +I G AQ G  E  + L++ +++ G   N +T+ +VL+
Sbjct: 139 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 198

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           + S LA  G G+Q+H+  ++    S V + +SLI MYSKCG L  + + F    +   + 
Sbjct: 199 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 258

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W++M+  Y  HG G E +ELFN M E+  ++ + V +L +L  CSH G++D+GL +F  +
Sbjct: 259 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 318

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V+ K GF+P ++HY CVVD+LGRAG + +A   I++MP +    I  +LL AC +H N +
Sbjct: 319 VE-KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAE 377

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + + V + +++I+P ++  YV+L+N++ASA RW DV+ VR+ M++K V K+ G SW E  
Sbjct: 378 MAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHK 437

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F   DRS    +E+ + +K+L+++ K  GY PD + VL+D+DEE+KE  L+ HSE
Sbjct: 438 GEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSE 497

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F L+  PEGAPIR+IKNLR+C DCH   K++S +  R+++LRD +RFHH + G C
Sbjct: 498 KLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKC 557

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 558 SCGDYW 563



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 146/323 (45%), Gaps = 7/323 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG         ++ +     R++  GQ++H + IK      + + + L   Y +  
Sbjct: 79  EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNG 138

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L D   +   M  RN+V+W  +I   +Q       L L+  M  S   PN+ TF TVL+
Sbjct: 139 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 198

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SC+       G+QIH+  IK    S + V SSL+ MY+K G + +A   F    + D V 
Sbjct: 199 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 258

Query: 228 CTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
            +++IS Y   G  +EAIELF  + +   M  N V + ++L A S       G ++   +
Sbjct: 259 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 318

Query: 287 L-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGRE 344
           + ++     +     ++D+  + G L  +  +  +M  +T ++ W  +L   + H     
Sbjct: 319 VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEM 378

Query: 345 VVELFNLMREENKVKP-DSVTYL 366
              +F   +E  ++ P DS  Y+
Sbjct: 379 AQRVF---KEILQIDPNDSACYV 398



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 116/247 (46%), Gaps = 34/247 (13%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG----------------------- 239
           MY+K G    A  V+  + +++ +S   +I+GY + G                       
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 240 --------LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
                    +EE + LFR++   G   +  T  SV +  +GL ++  G+Q+H + +++ +
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGL 120

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              +V+ +SL  MY + G L     V  +M  R +++WN +++G +++G    V+ L+ +
Sbjct: 121 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKM 180

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M+     +P+ +T++ VLS CS   +  +G  +  E +  K G    +     ++ M  +
Sbjct: 181 MKISG-CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI--KIGASSVVAVVSSLISMYSK 237

Query: 412 AGRVGEA 418
            G +G+A
Sbjct: 238 CGCLGDA 244


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 340/554 (61%), Gaps = 3/554 (0%)

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           HA  I++     V + T ++  Y KC  +  AR +FD M  +N VSW AMI  Y+Q   S
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
            EAL LF RM+    +  + +    L +C      + G ++H L+++   +S++ V ++L
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           + MY+K  R+  A  VF+ L  R  VS  A+I G AQ G  E+A+ LF ++Q+E +  + 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T  SV+ AL+ ++     + +H + +R  +   V +  +LIDMY+KCG +  +R +F++
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
             ER VI+WNAM+ GY  HG G+  VELF  M+    V P+  T+L+VLS CSH G+ D 
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV-PNETTFLSVLSACSHAGLVDE 482

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G   F  + +   G EP +EHYG +VD+LGRAG++ EA  FI+ MP +P  ++ G++LGA
Sbjct: 483 GREYFTSMKE-DYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA 541

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           C++H NV++ E   Q++ E+ P+    +V+L+N+YA+A  W+DV RVR  M++  + K P
Sbjct: 542 CKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTP 601

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G S I+L   +HTF++   +H   +E+ +++ +L  + K  GYVPD   + +DV+++ K 
Sbjct: 602 GWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKA 660

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
           ++L  HSEKLA+ FGLI T  G  I++ KNLR+C DCHN  K +S V GR++ +RD  RF
Sbjct: 661 QLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRF 720

Query: 621 HHIVEGTCSCGDYW 634
           HH  +G CSCGDYW
Sbjct: 721 HHFKDGKCSCGDYW 734



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 196/375 (52%), Gaps = 4/375 (1%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A + M++ G       + +LL  C  +  L  G+ VHA +            T L   Y 
Sbjct: 46  AFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYA 105

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFA 163
           KC   +DAR++FD M  R+ V+W A+++ Y++   +  A+ + +RM   + E P+  T  
Sbjct: 106 KCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV 165

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +VL +CA A      ++ H+  I+S  E  + V +++LD Y K G I  AR VF+ +P +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           + VS  A+I GYAQ G   EA+ LF ++  EG+    V+  + L A   L  L  G +VH
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
             ++R  + S V + N+LI MYSKC  +  +  VFD +  RT +SWNAM++G +++G   
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE 345

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           + V LF  M+ EN VKPDS T ++V+   +   + D   A +      +   + ++    
Sbjct: 346 DAVRLFTRMQLEN-VKPDSFTLVSVIPALAD--ISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 404 CVVDMLGRAGRVGEA 418
            ++DM  + GRV  A
Sbjct: 403 ALIDMYAKCGRVNIA 417



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 8/304 (2%)

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           AL  F+ M  +   P   TF ++L  CA       G+ +H+ +     +S     ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYV 261
           MYAK  R  +AR VF+ +P RD V+  A+++GYA+ GL   A+E+  ++Q  EG   + +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T  SVL A +   AL   ++ H+  +R  +   V +  +++D Y KCG +  +R VFD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             +  +SWNAM+ GY+++G  RE + LFN M EE  V    V+ LA L  C   G  D G
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG-VDVTDVSVLAALQACGELGCLDEG 281

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL----EFIKNMPFEPTAAILGSL 437
           + V HE++  + G +  +     ++ M  +  RV  A     E  +       A ILG  
Sbjct: 282 MRV-HELL-VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCA 339

Query: 438 LGAC 441
              C
Sbjct: 340 QNGC 343


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/579 (40%), Positives = 344/579 (59%), Gaps = 11/579 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTC----YRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
            LL        L  G+ VHA+ ++ C    ++  V + T L+  Y KC  L  A ++F+ 
Sbjct: 234 ALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEA 293

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT---EPNEFTFATVLTSCAGAFGF 175
           M  RN V+W+A++  +       EA +LF  ML        P   + A+ L +CA     
Sbjct: 294 MAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACANLSDL 351

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LGKQ+H+L+ KS   + +  G+SLL MYAKAG I +A  +F+ +  +D VS +A++SGY
Sbjct: 352 CLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGY 411

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G  +EA  +FRK+Q   +  +  T  S++ A S LAAL HGK  H  V+   I S  
Sbjct: 412 VQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASET 471

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + N+LIDMY+KCG +  SR++FD M  R ++SWN M+ GY  HG+G+E   LF  M+ +
Sbjct: 472 SICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQ 531

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
              +PD VT++ ++S CSH G+   G   FH +   K G  P +EHY  +VD+L R G +
Sbjct: 532 -ACEPDDVTFICLISACSHSGLVTEGKRWFHMMAH-KYGITPRMEHYIGMVDLLARGGFL 589

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA +FI+ MP +    + G+LLGACRVH N+D+G+ V   + ++ PE  GN+V+LSN++
Sbjct: 590 DEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIF 649

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           ++AGR+++   VR + KE+   K PG SWIE++  LH F   DRSH    E+  ++  + 
Sbjct: 650 SAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNIL 709

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           V   + GY  D S VL DV+EE+KEK LL HSEKLA+ FG++   E   I V KNLR+C 
Sbjct: 710 VDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCG 769

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K+++ V  R + +RD NRFHH   G CSCGD+W
Sbjct: 770 DCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 183/371 (49%), Gaps = 9/371 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     LR  + VH H  +      +++ T L+  Y KC     A  +F  M 
Sbjct: 132 FPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMP 191

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VV+W AM++ Y+      + +   + +++ D  PN  T   +L   A       G+ 
Sbjct: 192 ARDVVAWNAMLAGYALHGKYSDTIACLL-LMQDDHAPNASTLVALLPLLAQHGALSQGRA 250

Query: 181 IHSLIIKS----NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +H+  +++    + +  + VG++LLDMYAK G +  A  VFE +  R+ V+ +A++ G+ 
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 237 QLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
             G   EA  LF+ +  +G+   +  + AS L A + L+ L  GKQ+H+ + +  + + +
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDL 370

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              NSL+ MY+K G +  +  +FD M  +  +S++A++ GY ++G   E   +F  M+  
Sbjct: 371 TAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQAC 430

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           N V+PD  T ++++  CSH      G      ++    G   E      ++DM  + GR+
Sbjct: 431 N-VQPDVATMVSLIPACSHLAALQHGKCGHGSVI--VRGIASETSICNALIDMYAKCGRI 487

Query: 416 GEALEFIKNMP 426
             + +    MP
Sbjct: 488 DLSRQIFDVMP 498



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 7/331 (2%)

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  LS AR +FD++    +  + A+I AYS +  +           R   +PN +TF  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +C+        + +H    ++   + ++V ++L+D+YAK      A  VF  +P RDV
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           V+  A+++GYA  G   + I     +Q +    N  T  ++L  L+   AL  G+ VH++
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 286 VLR----FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
            +R     +    V++  +L+DMY+KCG L Y+ RVF+ M+ R  ++W+A++ G+   G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             E   LF  M  +        +  + L  C++  + D  L      +  K G   ++  
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACAN--LSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
              ++ M  +AG + +A      M  + T +
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVS 403


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 363/618 (58%), Gaps = 14/618 (2%)

Query: 27  PPNPQNL-KTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM- 84
           P N  +L +TLC+NG+L +A   +  L    +   Y++LL A    R       VH  + 
Sbjct: 41  PANANHLIQTLCANGRLARAAALLPGLPAPTQ-RTYESLLLAAARARDAALAAAVHRRLE 99

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
               +R   +L TRLI  Y     L  AR++FDE   +N+  W A++ A +   H  EAL
Sbjct: 100 ADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEAL 159

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAG-----AFGFELGKQIHSLIIKSNFESHIYVGSS 199
                M R     + +++   L +C       A      +++H+  I+  +  H +V ++
Sbjct: 160 ARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATT 219

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MI 257
           L+D YAK G +  A  VF  +PER+VVS +A+I  YA+     +AIELF+ +      ++
Sbjct: 220 LIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLV 279

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N +T  SVL A +G+ AL HGK +H+++LR    S V + N+L+ MY +CG L   R +
Sbjct: 280 PNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHI 339

Query: 318 FDNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           F  +  R  V+SWN+++ GY  HG G E V++F  M       P  +T+++VL  CSH G
Sbjct: 340 FKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVG-FSPSIITFISVLGACSHAG 398

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + G  +F  +V+   G  P  EHY C+VD+LGRAG++ EA+E I++M  EP+  + G+
Sbjct: 399 LVNEGKMLFESMVEY--GVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGA 456

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LLGACR+H +V+  E     L ++EP NAGNYV+L+++YA A     V  ++EL++E A+
Sbjct: 457 LLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHAL 516

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K  G SWIE+ + LH+F + D  +P  E+L A + +   + K  GYVPD   VLYD++ 
Sbjct: 517 EKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEG 576

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E+KE++L+GHSEKLA+ FGLI T  G  IR+ KNLR+C DCH+  KF+SK   R++ +RD
Sbjct: 577 EEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRD 636

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFHH  +G CSCGDYW
Sbjct: 637 VNRFHHFRDGVCSCGDYW 654


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 351/613 (57%), Gaps = 42/613 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +         ++ GQ+ HA ++    +P  +L  +++  Y     L  A  +FD + 
Sbjct: 80  YAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRID 139

Query: 121 ERNVVSWTAMISAYSQKAHSFEA---LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
             + + + ++I AY++          L  + RM       + FT   VL SCA      +
Sbjct: 140 NPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCM 199

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR----------------------- 214
           G+ +H   ++   E   YVG+SL+DMY K G I +AR                       
Sbjct: 200 GRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMK 259

Query: 215 --------GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVTYA 264
                    +FE +  R++VS TA+ISGY Q G  E+A+ LF ++  +G  M  N+VT  
Sbjct: 260 EGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIV 319

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE- 323
           SVL A +  AAL  G+++H       +     +Q +L  MY+KC SL  +R  FD +++ 
Sbjct: 320 SVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQN 379

Query: 324 -RTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            + +I+WN M+  Y+ HG G E V +F N++R    V+PD+VT++ +LSGCSH G+ D G
Sbjct: 380 GKNLIAWNTMITAYASHGCGVEAVSIFENMLRA--GVQPDAVTFMGLLSGCSHSGLIDAG 437

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
           L  F+++       EP +EHY CVVD+LGRAGR+ EA E I  MP +   ++ G+LL AC
Sbjct: 438 LNHFNDMGTIHS-VEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAAC 496

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
           R H N++I E   +RL  +EP+N+GNYV+LSNLYA AG WE+V ++R L+K + + K PG
Sbjct: 497 RSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPG 556

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            SWIE++   H F  +D+SHP  +E+   ++ L  K K AGY+PD S VL+D+ EE+KE 
Sbjct: 557 CSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEY 616

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
            L  HSEKLA+ FGL+ T  G  +RV KNLRIC DCH   KF+SK+Y R++ +RD NRFH
Sbjct: 617 NLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFH 676

Query: 622 HIVEGTCSCGDYW 634
              +G+CSCGDYW
Sbjct: 677 CFKDGSCSCGDYW 689



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 143 ALNLFIRMLRSDTE---PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
           +LNL +R+L        P+  ++A +          +LG+Q H+ I+    + + ++ + 
Sbjct: 58  SLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAK 117

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG---LDEEAIELFRKLQVEGM 256
           ++ MYA +G +  A  VF+ +     +   +II  Y + G        +E + ++   G+
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           + +  T   VL + + L+ +  G+ VH   LR  +     +  SLIDMY KCG +  +R+
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 237

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD M  R + SWNA++ GY K G      +LF  M   N      V++ A++SG +  G
Sbjct: 238 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRN-----IVSWTAMISGYTQNG 292

Query: 377 MEDRGLAVFHEIVDCKDGFE 396
             ++ L +F E++  +DG E
Sbjct: 293 FAEQALGLFDEML--QDGSE 310



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 103/253 (40%), Gaps = 12/253 (4%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           +YA +   L+    +  G+Q H+ ++   +     L   ++ MY+  G L  +  VFD +
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRI 138

Query: 322 SERTVISWNAMLVGYSKHG---MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
              + + +N+++  Y++HG        +E +  M     +  D+ T   VL  C+     
Sbjct: 139 DNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLG-DNFTLPFVLKSCADLSRV 197

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
             G  V  +    + G E +      ++DM  + G +G+A +    M     A+   +L+
Sbjct: 198 CMGRCVHGQ--GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS-WNALI 254

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
                   + + E + +R+   E  N  ++  + + Y   G  E    + + M +     
Sbjct: 255 AGYMKEGEIGVAEDLFERM---EHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEM 311

Query: 499 DPGRSWIELDQIL 511
            P  +W+ +  +L
Sbjct: 312 KP--NWVTIVSVL 322


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 346/572 (60%), Gaps = 7/572 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L A    + LR G ++H+   KT CY    Y+ T  I  Y+KC  +     +F E R+ 
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMGSALFREFRKP 285

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++V++ AMI  Y+    +  +L+LF  ++ S       T  + L   +G     L   IH
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVS-LVPVSGHL--MLIYAIH 342

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +KSNF SH  V ++L  +Y+K   I  AR +F+  PE+ + S  A+ISGY Q GL E
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +AI LFR++Q      N VT   +L+A + L AL  GK VH  V   +  S + +  +LI
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALI 462

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY+KCGS+  +RR+FD M+++  ++WN M+ GY  HG G+E + +F  M     + P  
Sbjct: 463 GMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG-ITPTP 521

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT+L VL  CSH G+   G  +F+ ++  + GFEP ++HY C+VD+LGRAG +  AL+FI
Sbjct: 522 VTFLCVLYACSHAGLVKEGDEIFNSMIH-RYGFEPSVKHYACMVDILGRAGHLQRALQFI 580

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + M  EP +++  +LLGACR+H + ++   V ++L E++P+N G +V+LSN++++   + 
Sbjct: 581 EAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP 640

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
               VR+  K++ + K PG + IE+ +  H F + D+SHP  +E+  K+++L  K +EAG
Sbjct: 641 QAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAG 700

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P+    L+DV+EE++E ++  HSE+LA+ FGLI T  G  IR+IKNLR+C+DCH   K
Sbjct: 701 YQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTK 760

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 761 LISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 207/448 (46%), Gaps = 33/448 (7%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           + HA +I   +R  + L T+L    +    +  AR +F  ++  +V  +  ++  +S   
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 139 HSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               +L++F  + +S D +PN  T+A  +++ +G      G+ IH   +    +S + +G
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           S+++ MY K  R+ +AR VF+ +PE+D +    +ISGY +  +  E+I++FR L  E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 258 S-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T   +L A++ L  L  G Q+HS   +    S+  +    I +YSKCG +     
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTYLAVLSG---- 371
           +F    +  ++++NAM+ GY+ +G     + LF  LM    +++  ++  L  +SG    
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLML 337

Query: 372 -------------CSHGGMEDRGLAVF---HEIVDCKDGFE--PE--IEHYGCVVDMLGR 411
                         SH  +      V+   +EI   +  F+  PE  +  +  ++    +
Sbjct: 338 IYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397

Query: 412 AGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
            G   +A+   + M    F P    +  +L AC     + +G++V   +   + E++  Y
Sbjct: 398 NGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS-IY 456

Query: 469 V--ILSNLYASAGRWEDVTRVRELMKEK 494
           V   L  +YA  G   +  R+ +LM +K
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKK 484



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           ++ H  Q H+ ++     + + L   L    S  G++ Y+R +F ++    V  +N ++ 
Sbjct: 32  SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           G+S +      + +F  +R+   +KP+S TY   +S  S G  +DR   V H      DG
Sbjct: 92  GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS-GFRDDRAGRVIHGQA-VVDG 149

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            + E+     +V M  +  RV +A +    MP + T
Sbjct: 150 CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/537 (41%), Positives = 334/537 (62%), Gaps = 12/537 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y +   LS AR++F+E   R+V +WTAM+ AY Q     EA  +F  M     +  
Sbjct: 225 MISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM----PQKR 280

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  ++   A     ++G+++   +   N  S     + ++  Y + G + +AR +F+
Sbjct: 281 EMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS----WNIMISGYCQNGDLAQARNLFD 336

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD VS  AII+GYAQ GL EEA+ +  +++ +G   N  T+   L+A + +AAL  
Sbjct: 337 MMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALEL 396

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQVH  V+R       ++ N+L+ MY KCG +  +  VF  +  + ++SWN ML GY++
Sbjct: 397 GKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYAR 456

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEP 397
           HG GR+ + +F  M     VKPD +T + VLS CSH G+ DRG   FH +   KD G  P
Sbjct: 457 HGFGRQALTVFESMITAG-VKPDEITMVGVLSACSHTGLTDRGTEYFHSMN--KDYGITP 513

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
             +HY C++D+LGRAG + EA   I+NMPFEP AA  G+LLGA R+H N+++GE   + +
Sbjct: 514 NSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMV 573

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++EP N+G YV+LSNLYA++GRW DV+++R  M++  V K PG SW+E+   +HTF   
Sbjct: 574 FKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVG 633

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D  HP +  + A +++L +K K  GYV     VL+DV+EE+K+ +L  HSEKLA+ FG++
Sbjct: 634 DCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGIL 693

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             P G PIRV+KNLR+C DCHN  K +SK+ GR + +RD +R+HH  EG CSC DYW
Sbjct: 694 TMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 21/290 (7%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y +   L DAR +FD M E++VVSW AM+S Y +  H  EA ++F RM       N
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKN 156

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L +   +   E  +++     KS++E  +   + L+  Y K   + +AR +F+
Sbjct: 157 SISWNGLLAAYVRSGRLEEARRLFE--SKSDWE--LISCNCLMGGYVKRNMLGDARQLFD 212

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P RD++S   +ISGYAQ G   +A  LF     E  + +  T+ +++ A      L  
Sbjct: 213 QIPVRDLISWNTMISGYAQDGDLSQARRLFE----ESPVRDVFTWTAMVYAYVQDGMLDE 268

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            ++V   + +    SY    N +I  Y++   +   R +F+ M    + SWN M+ GY +
Sbjct: 269 ARRVFDEMPQKREMSY----NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQ 324

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           +G   +   LF++M +      DSV++ A+++G +  G+ +  + +  E+
Sbjct: 325 NGDLAQARNLFDMMPQR-----DSVSWAAIIAGYAQNGLYEEAMNMLVEM 369



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 64/379 (16%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FD M  RN VS+ AMIS Y + A    A +LF +M   D     F++  +LT       
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDL----FSWNLMLTG------ 104

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
                                        YA+  R+ +AR +F+ +PE+DVVS  A++SG
Sbjct: 105 -----------------------------YARNRRLRDARMLFDSMPEKDVVSWNAMLSG 135

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y + G  +EA ++F ++  +    N +++  +L A      L   +++      +E+ S 
Sbjct: 136 YVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWELISC 191

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
               N L+  Y K   L  +R++FD +  R +ISWN M+ GY++ G   +   LF    E
Sbjct: 192 ----NCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----E 243

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E+ V+ D  T+ A++      GM D    VF E+   ++        Y  ++    +  R
Sbjct: 244 ESPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKRE------MSYNVMIAGYAQYKR 296

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSN 473
           +    E  + MPF    +    + G C+   N D+ +   + L ++ P+ ++ ++  +  
Sbjct: 297 MDMGRELFEEMPFPNIGSWNIMISGYCQ---NGDLAQ--ARNLFDMMPQRDSVSWAAIIA 351

Query: 474 LYASAGRWEDVTRVRELMK 492
            YA  G +E+   +   MK
Sbjct: 352 GYAQNGLYEEAMNMLVEMK 370



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 107/212 (50%), Gaps = 5/212 (2%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L+EM   G  +    +   L+AC +   L  G++VH  +++T Y     +   L+  Y K
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCK 425

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C C+ +A  +F  ++ +++VSW  M++ Y++     +AL +F  M+ +  +P+E T   V
Sbjct: 426 CGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGV 485

Query: 166 LTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L++C+     + G +  HS+        +    + ++D+  +AG + EA+ +   +P E 
Sbjct: 486 LSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEP 545

Query: 224 DVVSCTAIISG---YAQLGLDEEAIELFRKLQ 252
           D  +  A++     +  + L E+A E+  K++
Sbjct: 546 DAATWGALLGASRIHGNMELGEQAAEMVFKME 577



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 18/181 (9%)

Query: 179 KQIHSLII---------KSNFES-HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           +Q+HS I          K +FE  H    +  +  + + G    A  VF+ +P R+ VS 
Sbjct: 8   RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSY 67

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+ISGY +      A +LF K+  + + S    +  +LT  +    L   + +   +  
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFS----WNLMLTGYARNRRLRDARMLFDSMPE 123

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            ++ S+    N+++  Y + G +  +R VFD M  +  ISWN +L  Y + G   E   L
Sbjct: 124 KDVVSW----NAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRL 179

Query: 349 F 349
           F
Sbjct: 180 F 180


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 351/592 (59%), Gaps = 4/592 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  ++M  +GL        T+L A    +  R G  +     K      VY+ T LI  Y
Sbjct: 200 RVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLY 259

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           +KC      R +FD++ + +++S+ AMIS Y+    +  A+ LF  +L S    N  T  
Sbjct: 260 SKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            ++         +L + I +L +K        V ++L  +Y +   +  AR +F+  PE+
Sbjct: 320 GLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            + S  A+ISGY Q GL + AI LF+++  + +  N VT  S+L+A + L AL  GK VH
Sbjct: 380 SLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVH 438

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
             +    + S V +  +L+DMY+KCGS+  +R++FD M ++ V++WNAM+ GY  HG G+
Sbjct: 439 GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGK 498

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E ++LF  M +   + P  VT+L++L  CSH G+   G  +FH + +   GF+P  EHY 
Sbjct: 499 EALKLFYEMLQSG-IPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN-NYGFQPMSEHYA 556

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+LGRAG++  ALEFI+ MP EP  A+ G+LLGAC +H N ++     +RL +++PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           N G YV+LSN+Y++   +     VR+++K++ + K PG + IE+D   + F + DRSHP 
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676

Query: 524 REELSAKVKQLSVKFKEAGYVPD-MSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              +   +++L+ K +EAGY  + ++  L+DV++E+KE ++  HSEKLA+ FGLI T  G
Sbjct: 677 ATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPG 736

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             IR+IKNLR+C+DCH   KF+SK+  R + +RD NRFHH   G CSCGDYW
Sbjct: 737 TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 175/351 (49%), Gaps = 4/351 (1%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           R G  +HAH I       +++ + ++  Y K      ARK+FD M ER+ V W  MIS +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           S+ ++  +++ +F+ ML      +  T ATVLT+ A    + LG  I  L  K    S +
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           YV + L+ +Y+K G+  + R +F+ + + D++S  A+ISGY      E A+ LFR+L   
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G   N  T   ++        L   + + +  L+  I     +  +L  +Y +   + ++
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R++FD   E+++ SWNAM+ GY+++G+    + LF  M  +  + P+ VT  ++LS C+ 
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQ 427

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G    G  V H ++   +  E  +     +VDM  + G + EA +    M
Sbjct: 428 LGALSIGKWV-HGLIK-SERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 211/467 (45%), Gaps = 37/467 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLLN   N  TL    ++ A +I       +   T+L   +     ++  R++F+++ + 
Sbjct: 19  TLLN---NATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           ++  +  +I  +S       ++ L+  + + ++  P+ FT+A  +++ +      +G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+  I     S+++VGS+++D+Y K  R   AR VF+ +PERD V    +ISG+++    
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E++I +F  +   G+  +  T A+VLTA++ L     G  +     +  + S V +   L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKP 360
           I +YSKCG     R +FD + +  +IS+NAM+ GY+ +      V LF  L+    +V  
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 361 DS-VTYLAVLSGCSH--------------GGMEDRGLAVFHEIVDCK------------D 393
            + V  + V    +H              G +    ++     V C+            +
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGE 451
             E  +  +  ++    + G    A+   + M     P    + S+L AC     + IG+
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 452 FVGQRLMEIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEKAV 496
           +V   L++ E   +  YV   L ++YA  G   +  ++ +LM +K V
Sbjct: 436 WV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 267 LTALSGLAALGHGKQVHS----HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           LT L+    L    Q+ +    H + +++ S   L +   D+    G++ + R++F+ +S
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDL----GAVAHVRQLFNKVS 73

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +  +  +N ++ G+S +G+ +  + L+  +R++  ++PD+ TY   +S  S   +ED  +
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR--LEDERV 131

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            V        DG    +     +VD+  +  R   A +    MP
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/642 (37%), Positives = 347/642 (54%), Gaps = 75/642 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + L +C  Q   R    +HA  + +      ++ + L+  Y +      AR +FD M E+
Sbjct: 25  SALKSCPAQPLARA---LHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEK 81

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT--------------- 167
           NVV W+A+I+ YS +  +  A  L  +M  +  EPN  T+  +++               
Sbjct: 82  NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTAL 141

Query: 168 ---------------SCA-GAFG----FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
                          SCA  A G      +GKQ+H  ++K+       V ++L+DMY K 
Sbjct: 142 VRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKC 201

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYA------------------------------- 236
           GR  E   VF      DV SC A+++G +                               
Sbjct: 202 GRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIV 261

Query: 237 ----QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
               Q G D EA++LFR +Q  G+  N VT   VL A + +AAL HG+  H   LR    
Sbjct: 262 ACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFL 321

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             V + ++L+DMY+KCG   ++R +FD M  R V+SWNAM+ GY+ HG     V+LF  M
Sbjct: 322 HDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSM 381

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            ++ K KPD VT+  VL  CS  G+ + G   F+E+     G  P +EHY C+V +LGR+
Sbjct: 382 -QKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQ-GHGISPRMEHYACMVTLLGRS 439

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G++ EA + I  MPFEP + I GSLLG+CRV+ NV + E   ++L ++EP NAGNYV+LS
Sbjct: 440 GKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLS 499

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YAS   W+ V RVR+ MK   + K+ G SWIE+   +H   A D SHPM   ++ K+ 
Sbjct: 500 NIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLN 559

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           QL+++    G+ P    VL+DV+E++K+ +L  HSEKLA+  GLI T  G P+RVIKNLR
Sbjct: 560 QLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLR 619

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IC DCH   KF+S    R++S+RD NRFHH  +G CSCGDYW
Sbjct: 620 ICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 348/575 (60%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +DT L A +        + VH  ++KTCY     +   L+  Y +   +SDA K+F+EM 
Sbjct: 250 FDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + +VV W+ MI+ + Q     EA++LFIRM  +   PNEFT +++L  CA      LG+Q
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQ 369

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L++K  F+  IYV ++L+D+YAK  ++  A  +F  L  ++ VS   +I GY  LG 
Sbjct: 370 LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGE 429

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A  +FR+     +    VT++S L A + LA++  G QVH   ++      V + NS
Sbjct: 430 GGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNS 489

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+KCG + +++ VF+ M    V SWNA++ GYS HG+GR+ + + ++M++ +  KP
Sbjct: 490 LIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRD-CKP 548

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + +T+L VLSGCS+ G+ D+G   F  ++    G EP +EHY C+V +LGR+G++ +A++
Sbjct: 549 NGLTFLGVLSGCSNAGLIDQGQECFESMIR-DHGIEPCLEHYTCMVRLLGRSGQLDKAMK 607

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            I+ +P+EP+  I  ++L A     N +      + +++I P++   YV++SN+YA A +
Sbjct: 608 LIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQ 667

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W +V  +R+ MKE  V K+PG SWIE    +H F      HP  + ++  ++ L++K   
Sbjct: 668 WANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATR 727

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP-IRVIKNLRICVDCHN 599
           AGYVPD + VL D+D+E+K+K L  HSE+LAL +GL+  P     I ++KNLRIC DCH+
Sbjct: 728 AGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHS 787

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +S +  R + +RD NRFHH   G CSCGD+W
Sbjct: 788 AMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +H+ ++K  Y    ++   LI  Y+ C  +  AR +F+ +  +++V W  ++S Y +  +
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             ++L L   M  +   PN +TF T L +  G   F+  K +H  I+K+ +     VG  
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LL +Y + G + +A  VF  +P+ DVV  + +I+ + Q G   EA++LF +++   ++ N
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
             T +S+L   +     G G+Q+H  V++      + + N+LID+Y+KC  +  + ++F 
Sbjct: 348 EFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFA 407

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE--ENKVKPDSVTYLAVLSGCSHGGM 377
            +S +  +SWN ++VGY   G G +    F++ RE   N+V    VT+ + L  C+    
Sbjct: 408 ELSSKNEVSWNTVIVGYENLGEGGKA---FSMFREALRNQVSVTEVTFSSALGACASLAS 464

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            D G+ V    +   +  +  + +   ++DM  + G +  A      M
Sbjct: 465 MDLGVQVHGLAIKTNNAKKVAVSN--SLIDMYAKCGDIKFAQSVFNEM 510



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 184/368 (50%), Gaps = 13/368 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L  C+ +      + +H  ++K      ++    L+  Y K     DA  +FDEM 
Sbjct: 52  YGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMP 111

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN VS+  +   Y+ +    + + L+ R+ R   E N   F + L         E+   
Sbjct: 112 ERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPW 167

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I+K  ++S+ +VG++L++ Y+  G +  AR VFE +  +D+V    I+S Y + G 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV---L 297
            E++++L   +++ G + N  T+ + L A  GL A    K VH  +L+     YV+   +
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILK---TCYVLDPRV 284

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
              L+ +Y++ G ++ + +VF+ M +  V+ W+ M+  + ++G   E V+LF  MRE   
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREA-F 343

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V P+  T  ++L+GC+ G     G  +   +V  K GF+ +I     ++D+  +  ++  
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV--KVGFDLDIYVSNALIDVYAKCEKMDT 401

Query: 418 ALEFIKNM 425
           A++    +
Sbjct: 402 AVKLFAEL 409


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 351/592 (59%), Gaps = 4/592 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           +  ++M  +GL        T+L A    +  R G  +     K      VY+ T LI  Y
Sbjct: 200 RVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLY 259

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           +KC      R +FD++ + +++S+ AMIS Y+    +  A+ LF  +L S    N  T  
Sbjct: 260 SKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            ++         +L + I +L +K        V ++L  +Y +   +  AR +F+  PE+
Sbjct: 320 GLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            + S  A+ISGY Q GL + AI LF+++  + +  N VT  S+L+A + L AL  GK VH
Sbjct: 380 SLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVH 438

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
             +    + S V +  +L+DMY+KCGS+  +R++FD M ++ V++WNAM+ GY  HG G+
Sbjct: 439 GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGK 498

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E ++LF  M +   + P  VT+L++L  CSH G+   G  +FH + +   GF+P  EHY 
Sbjct: 499 EALKLFYEMLQSG-IPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN-NYGFQPMSEHYA 556

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+LGRAG++  ALEFI+ MP EP  A+ G+LLGAC +H N ++     +RL +++PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           N G YV+LSN+Y++   +     VR+++K++ + K PG + IE+D   + F + DRSHP 
Sbjct: 617 NVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQ 676

Query: 524 REELSAKVKQLSVKFKEAGYVPD-MSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              +   +++L+ K +EAGY  + ++  L+DV++E+KE ++  HSEKLA+ FGLI T  G
Sbjct: 677 ATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPG 736

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             IR+IKNLR+C+DCH   KF+SK+  R + +RD NRFHH   G CSCGDYW
Sbjct: 737 TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 175/351 (49%), Gaps = 4/351 (1%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           R G  +HAH I       +++ + ++  Y K      ARK+FD M ER+ V W  MIS +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           S+ ++  +++ +F+ ML      +  T ATVLT+ A    + LG  I  L  K    S +
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           YV + L+ +Y+K G+  + R +F+ + + D++S  A+ISGY      E A+ LFR+L   
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G   N  T   ++        L   + + +  L+  I     +  +L  +Y +   + ++
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R++FD   E+++ SWNAM+ GY+++G+    + LF  M  +  + P+ VT  ++LS C+ 
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSILSACAQ 427

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G    G  V H ++   +  E  +     +VDM  + G + EA +    M
Sbjct: 428 LGALSIGKWV-HGLIK-SERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 211/467 (45%), Gaps = 37/467 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLLN   N  TL    ++ A +I       +   T+L   +     ++  R++F+++ + 
Sbjct: 19  TLLN---NATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP 75

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           ++  +  +I  +S       ++ L+  + + ++  P+ FT+A  +++ +      +G  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+  I     S+++VGS+++D+Y K  R   AR VF+ +PERD V    +ISG+++    
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E++I +F  +   G+  +  T A+VLTA++ L     G  +     +  + S V +   L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKP 360
           I +YSKCG     R +FD + +  +IS+NAM+ GY+ +      V LF  L+    +V  
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 361 DS-VTYLAVLSGCSH--------------GGMEDRGLAVFHEIVDCK------------D 393
            + V  + V    +H              G +    ++     V C+            +
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGE 451
             E  +  +  ++    + G    A+   + M     P    + S+L AC     + IG+
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 452 FVGQRLMEIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEKAV 496
           +V   L++ E   +  YV   L ++YA  G   +  ++ +LM +K V
Sbjct: 436 WV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 267 LTALSGLAALGHGKQVHS----HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           LT L+    L    Q+ +    H + +++ S   L +   D+    G++ + R++F+ +S
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDL----GAVAHVRQLFNKVS 73

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           +  +  +N ++ G+S +G+ +  + L+  +R+   ++PD+ TY   +S  S   +ED  +
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASR--LEDERV 131

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            V        DG    +     +VD+  +  R   A +    MP
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP 175


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/626 (36%), Positives = 369/626 (58%), Gaps = 33/626 (5%)

Query: 36  LCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
            C  G L +A+    +     LE+R   Y ++L  C + ++++ G+R+H+ +        
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML- 151
             L ++L+  Y  C  L + R++FD++    V  W  +++ Y++  +  E+L+LF RM  
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 152 ----RSDTEPNEF-------------TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
               R ++    F               +  +++     G +L +Q+  L I ++  + +
Sbjct: 196 LGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 195 YV----GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
            V     + LLDMY+K+G ++ A  VFE + ER VVS T++I+GYA+ GL + ++ LF +
Sbjct: 256 SVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 315

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKC 308
           ++ E +  N +T A +L A + LAAL  G+++H H+LR  F +  +V   N+L+DMY KC
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA--NALVDMYLKC 373

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G+L  +R +FD + E+ ++SW  M+ GY  HG G E +  FN MR    ++PD V+++++
Sbjct: 374 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSG-IEPDEVSFISI 432

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L  CSH G+ D G   F+ + +     EP+ EHY C+VD+L RAG + +A +FIK MP E
Sbjct: 433 LYACSHSGLLDEGWGFFNMMRN-NCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE 491

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           P A I G+LL  CR++++V + E V + + E+EPEN G YV+L+N+YA A +WE+V ++R
Sbjct: 492 PDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLR 551

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
           E +  + + K+PG SWIE+   +H F   D SHP+  ++   +K+   + KE G+ P M 
Sbjct: 552 ERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMR 611

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
             L   D+ +KE  L GHSEK+A+ FG++  P G  +RV KNLR+C DCH  AKF+SK+ 
Sbjct: 612 YALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMV 671

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
            R + LRD NRFHH  +G+CSC  +W
Sbjct: 672 KRDIILRDSNRFHHFKDGSCSCRGHW 697


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 342/578 (59%), Gaps = 16/578 (2%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E  D  +  CV+    + G   H H++           T LI  Y+KC  +  AR +FD 
Sbjct: 224 EVADVTMGRCVHSFAEKCGLAEHEHVL-----------TGLISLYSKCGDVESARCLFDM 272

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M + ++V++ A+IS YS       ++NLF  ++     PN  T    L      FG +L 
Sbjct: 273 MEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTL-VALIPVHSPFGHDLL 331

Query: 179 KQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            Q +H  ++KS F ++  V +++  ++ +   +  AR  F+ +PE+ + S  A+ISGYAQ
Sbjct: 332 AQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQ 391

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL E A+ LF ++    +  N +T +S L+A + L AL  GK +H  +   ++   V +
Sbjct: 392 NGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYV 451

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +LIDMY+KCGS++ +RR+F+ M  + V+SWNAM+ GY  HG G E ++L+  M + + 
Sbjct: 452 MTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAH- 510

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + P S T+L+VL  CSHGG+ + G  VF  + D      P IEH  C+VD+LGRAG++ E
Sbjct: 511 LLPTSATFLSVLYACSHGGLVEEGWKVFRSMTD-DYAINPGIEHCTCMVDLLGRAGQLKE 569

Query: 418 ALEFIKNMPFEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           A E I   P       + G+LLGAC VH + D+ +   Q+L E++PEN+G YV+LSNL+ 
Sbjct: 570 AFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHT 629

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S  ++ +   VR+  K + + K PG + IE+    H F A DR+HP  E + + +++L+ 
Sbjct: 630 SKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTA 689

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K  EAGY P+    LYDV+EE+KE ++  HSEKLA+ FGL+ T  G  IR+IKNLR+C+D
Sbjct: 690 KMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLD 749

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CHN  KF+SKV  R + +RD +RFHH  +G CSCGDYW
Sbjct: 750 CHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCA 170
           ARK+FD +   + V W  +++  S      EA+  F RM+      P+  T A+VL + A
Sbjct: 168 ARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLPAAA 223

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                 +G+ +HS   K     H +V + L+ +Y+K G +  AR +F+ + + D+V+  A
Sbjct: 224 EVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNA 283

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +ISGY+  G+   ++ LF +L   G+  N  T  +++   S        + +H  VL+  
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG 343

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
             +   +  ++  ++ +   +  +R+ FD M E+T+ SWNAM+ GY+++G+    V LF 
Sbjct: 344 FTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFE 403

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M + N V+P+ +T  + LS C+  G    G    H I+  +D  EP +     ++DM  
Sbjct: 404 QMVKLN-VRPNPITISSTLSACAQLGALSLG-KWLHRIITEED-LEPNVYVMTALIDMYA 460

Query: 411 RAGRVGEALEFIKNM 425
           + G + EA      M
Sbjct: 461 KCGSISEARRIFNTM 475



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 48/382 (12%)

Query: 157 PNEFTFATVLTSCAG-------AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           P+ F+FA   TS A        A      + +H+L + + + +  +V S+L  +Y    R
Sbjct: 105 PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSR 164

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLT 268
           +  AR VF+ +P  D V    +++G +      EA+E F ++  +G +  +  T ASVL 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLP 220

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + +A +  G+ VHS   +  +  +  +   LI +YSKCG +  +R +FD M +  +++
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA-----------VLSGCSHGGM 377
           +NA++ GYS +GM    V LF  +     + P+S T +A           +L+ C HG +
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLG-LWPNSSTLVALIPVHSPFGHDLLAQCLHGFV 339

Query: 378 EDRGLAV--------------FHEIVDCKDGFE--PE--IEHYGCVVDMLGRAGRVGEAL 419
              G                  +++   +  F+  PE  +E +  ++    + G    A+
Sbjct: 340 LKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAV 399

Query: 420 EFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNL 474
              + M      P    + S L AC     + +G+++ + + E  +EP N      L ++
Sbjct: 400 ALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEP-NVYVMTALIDM 458

Query: 475 YASAGRWEDVTRVRELMKEKAV 496
           YA  G   +  R+   M  K V
Sbjct: 459 YAKCGSISEARRIFNTMDNKNV 480


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 336/554 (60%), Gaps = 22/554 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRER----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           ++  Y++     DA ++F++M+E     +VV+W+A IS Y+Q+   +EAL +  +ML S 
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-------SHIYVGSSLLDMYAKA 207
            +PNE T  +VL+ CA       GK+IH   IK   +           V + L+DMYAK 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKC 420

Query: 208 GRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVTY 263
            ++  AR +F+ L   ERDVV+ T +I GY+Q G   +A+EL  ++  E   +  N  T 
Sbjct: 421 KKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFE---IPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +  L A + LAAL  GKQ+H++ LR +   +P +V   N LIDMY+KCG +  +R VFDN
Sbjct: 481 SCALVACASLAALSIGKQIHAYALRNQQNAVPLFV--SNCLIDMYAKCGDIGDARLVFDN 538

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M E+  ++W +++ GY  HG G E + +F  MR     K D VT L VL  CSH GM D+
Sbjct: 539 MMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG-FKLDGVTLLVVLYACSHSGMIDQ 597

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G+  F+ +     G  P  EHY C+VD+LGRAGR+  AL  I+ MP EP   +  +LL  
Sbjct: 598 GMEYFNRM-KTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSC 656

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR+H  V++GE+  +++ E+   N G+Y +LSN+YA+AGRW+DVTR+R LM+ K + K P
Sbjct: 657 CRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRP 716

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G SW+E  +   TF   D++HP  +E+   +     + K+ GYVP+    L+DVD+E+K+
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKD 776

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
            +L  HSEKLAL +G++ TP+GA IR+ KNLR+C DCH    ++S++   ++ LRD +RF
Sbjct: 777 DLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRF 836

Query: 621 HHIVEGTCSCGDYW 634
           HH   G CSC  YW
Sbjct: 837 HHFKNGLCSCKGYW 850



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 221/456 (48%), Gaps = 57/456 (12%)

Query: 26  FPPNPQN-------LKTLCSNGQLTKALIE---MATLGLEMRFEEYDTLLNACVNQRTLR 75
           FPP+          +++  +NG+  K L     M +L        +  +  AC    ++R
Sbjct: 85  FPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVR 144

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G   HA    T +   V++   L+  Y++C  LSDARK+FDEM   +VVSW ++I +Y+
Sbjct: 145 CGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYA 204

Query: 136 QKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +      AL +F +M       P++ T   VL  CA      LGKQ H   + S    ++
Sbjct: 205 KLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNM 264

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG+ L+DMYAK G + EA  VF  +P +DVVS  A+++GY+Q+G  E+A+ LF ++Q E
Sbjct: 265 FVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324

Query: 255 -----------------------------------GMISNYVTYASVLTALSGLAALGHG 279
                                              G+  N VT  SVL+  + + AL HG
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 280 KQVHSHVLRFEIP-------SYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWN 330
           K++H + +++ +           ++ N LIDMY+KC  +  +R +FD++S  ER V++W 
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444

Query: 331 AMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            M+ GYS+HG   + +EL + M EE+ + +P++ T    L  C+       G  +    +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYAL 504

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             +    P      C++DM  + G +G+A     NM
Sbjct: 505 RNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM 539



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 135/322 (41%), Gaps = 55/322 (17%)

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDE 242
           I+  N  SH      L+  Y   G +  A  +    P  D  V    ++I  Y   G   
Sbjct: 56  ILTLNLTSH------LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRAN 109

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           + +  F  +       +  T+  V  A   ++++  G   H+        S V + N+L+
Sbjct: 110 KCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALV 169

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MYS+CGSL+ +R+VFD M    V+SWN+++  Y+K G  +  +E+F+ M  E   +PD 
Sbjct: 170 AMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDD 229

Query: 363 VTYLAVLSGCSHGGMED-----RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +T + VL  C+  G         G AV  E++  ++ F        C+VDM  + G + E
Sbjct: 230 ITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI--QNMFVGN-----CLVDMYAKFGMMDE 282

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A     NMP +              V +N  +               AG        Y+ 
Sbjct: 283 ANTVFSNMPVKDV------------VSWNAMV---------------AG--------YSQ 307

Query: 478 AGRWEDVTRVRELMKEKAVTKD 499
            GR+ED  R+ E M+E+ +  D
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMD 329



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 8/162 (4%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L AC +   L  G+++HA+ ++      P+++   LI  Y KC  + DAR +FD M E+N
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            V+WT++++ Y    +  EAL +F  M R   + +  T   VL +C+ +   + G +  +
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 184 LIIKSNFESHIYVG----SSLLDMYAKAGRIHEARGVFECLP 221
             +K++F   +  G    + L+D+  +AGR++ A  + E +P
Sbjct: 604 R-MKTDFG--VSPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 355/601 (59%), Gaps = 27/601 (4%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   + L    +M  LG+++      ++L  C N  TL  G+ VH+  IK+ +   + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A ++F++M ERNVVSWT+MI+ Y++   S  A+ L  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +     ++L +CA +   + GK +H  I  +N ES+++V ++L+DMYAK G +  A 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAAN 407

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D++S   +I    +L  D                    T A VL A + L+
Sbjct: 408 SVFSTMVVKDIISWNTMI---GELKPDSR------------------TMACVLPACASLS 446

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GK++H ++LR    S   + N+L+D+Y KCG L  +R +FD +  + ++SW  M+ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG G E +  FN MR+   ++PD V+++++L  CSH G+ ++G   F+ I+     
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY-IMKNDFN 564

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP++EHY C+VD+L R G + +A EFI+ +P  P A I G+LL  CR ++++++ E V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN+G YV+L+N+YA A +WE+V R+RE + ++ + K+PG SWIE+   ++ F
Sbjct: 625 ERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLF 684

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              ++ SHP  + + + +K++  K KE G+ P     L + DE QKE  L GHSEKLA+ 
Sbjct: 685 VSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P    IRV KNLR+C DCH  AKF+SK   R++ LRD NRFHH  +G CSC  +
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGF 804

Query: 634 W 634
           W
Sbjct: 805 W 805



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 147/557 (26%), Positives = 244/557 (43%), Gaps = 93/557 (16%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPP-------NPQNLKTL--CSNGQLTKA--LIEM 49
           + +P  +++ FS +  +   + + + P           N K L  C  G L  A  LI M
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICM 91

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
                E+  + Y ++L  C   ++   G++VH+ +          L  +L+ FY  C  L
Sbjct: 92  CKKS-ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDL 150

Query: 110 SDARKMFDEMRERNV--------------------------------------------- 124
            + R++FD M ++NV                                             
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDK 210

Query: 125 ------VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
                 +SW +MIS Y     +   L ++ +M+    + +  T  +VL  CA +    LG
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K +HSL IKS+FE  I   ++LLDMY+K G +  A  VFE + ER+VVS T++I+GY + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  + AI+L ++++ EG+  + V   S+L A +   +L +GK VH ++    + S + + 
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+L+DMY+KCGS+  +  VF  M  + +ISWN M+                       ++
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------------GEL 428

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           KPDS T   VL  C+     +RG  +   I+  ++G+  +      +VD+  + G +G A
Sbjct: 429 KPDSRTMACVLPACASLSALERGKEIHGYIL--RNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
                 +P +   +    + G     Y N  I  F   R   IEP+       +S LYA 
Sbjct: 487 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYAC 543

Query: 478 --AGRWEDVTRVRELMK 492
             +G  E   R   +MK
Sbjct: 544 SHSGLLEQGWRFFYIMK 560


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 364/606 (60%), Gaps = 39/606 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY--NKCECLSDARKMFDEMR 120
            LL  C N R L+    +HAHM++T     V+  +RLI F   +    L  A ++  +++
Sbjct: 22  VLLECCSNARDLK---IIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQ 78

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N+  + A+I   S   +   + + +I+ LR    P+  T   ++ +CA      +G Q
Sbjct: 79  NPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQ 138

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE-------------------C-- 219
            H   IK  FE   YV +SL+ MYA  G I+ AR VF+                   C  
Sbjct: 139 THGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGD 198

Query: 220 ----------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                     +PER++V+ + +ISGYA+    E+A+E F  LQ EG+++N      V+++
Sbjct: 199 AKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISS 258

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L AL  G++ H +V+R ++   ++L  +++DMY++CG++  +  VF+ + E+ V+ W
Sbjct: 259 CAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCW 318

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A++ G + HG   + +  F+ M ++  V P  +T+ AVL+ CSH GM +RGL +F E +
Sbjct: 319 TALIAGLAMHGYAEKALWYFSEMAKKGFV-PRDITFTAVLTACSHAGMVERGLEIF-ESM 376

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
               G EP +EHYGC+VD+LGRAG++ +A +F+  MP +P A I  +LLGACR+H NV++
Sbjct: 377 KRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEV 436

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           GE VG+ L+E++PE +G+YV+LSN+YA A +W+DVT +R++MK+K V K PG S IE+D 
Sbjct: 437 GERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDG 496

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSV-KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            +H F   D++HP  E++    + + + K K AGYV + +  ++D+DEE+KE  L  HSE
Sbjct: 497 KVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSE 556

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ +G++      PIR++KNLR+C DCH   K +SKV+  ++ +RD+NRFHH  EGTC
Sbjct: 557 KLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTC 616

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 617 SCMDYW 622



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 159/326 (48%), Gaps = 4/326 (1%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMR--FEEYDTLLNACV 69
           +S  +  + L     P N  +   + +  QL  A + M T G  ++  FE+   + N+ V
Sbjct: 100 NSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLV 159

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           +     G       + +   R  V   T +I  Y++C     AR++FD M ERN+V+W+ 
Sbjct: 160 HMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWST 219

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           MIS Y++     +A+  F  +       NE     V++SCA      +G++ H  ++++ 
Sbjct: 220 MISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNK 279

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++ +G++++DMYA+ G + +A  VFE LPE+DV+  TA+I+G A  G  E+A+  F 
Sbjct: 280 LSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFS 339

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKC 308
           ++  +G +   +T+ +VLTA S    +  G ++   + R   +   +     ++D+  + 
Sbjct: 340 EMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRA 399

Query: 309 GSLTYSRRVFDNMSER-TVISWNAML 333
           G L  + +    M  +     W A+L
Sbjct: 400 GKLRKAEKFVLKMPVKPNAPIWRALL 425


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 327/516 (63%), Gaps = 33/516 (6%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M+    +PN+FT +TV+ +CA     E GKQ H+ IIK  FES + V ++L+ MYA+ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 210 IHEARGVFECLPER-------------------------------DVVSCTAIISGYAQL 238
           + +A  VF+ + ER                               DVVS TA+I+GYAQ 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  +E++ +F +++  GM S+     SVL+A + LAAL  G+Q H++V++      +V+ 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+DMY+K GS+  + +VFD M +R  +SWN+++ G ++HG G + V LF  M +   +
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG-I 239

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           KP+ ++++ VLS CSH G+ + G   F+ ++    G  P++ HY C++D+LGRAG + EA
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFN-LMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
             FI  MP EP  ++ G+LLGACR+H N ++ + + + L+ +E + AG YV+LSN+YA+A
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G+W+D  +VR+LMK++ V K PG SWIE+  I+H F A + SHP  +E+   ++ LS K 
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKM 418

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K AGYVP+ + VL DV++++KE  L  HSEKLA+ FG+I T  G  IRV KNLR+C DCH
Sbjct: 419 KAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCH 478

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              KF+S  + RK+ +RD NRFHH  +G CSCGDYW
Sbjct: 479 TVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 33/311 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD----- 117
           T++ AC +  +L  G++ H ++IK  +   V ++T L+  Y +C  L DA  +FD     
Sbjct: 15  TVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSER 74

Query: 118 --------------------------EMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
                                     EM ER+VVSWTA+I+ Y+Q  +  E+LN+F +M 
Sbjct: 75  STRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR 134

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           ++  + + F   +VL++CA     ELG+Q H+ +++S F   I VGS+L+DMYAK+G + 
Sbjct: 135 KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSME 194

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A  VF+ +P+R+ VS  +II+G AQ G   +A+ LF ++   G+  N +++  VL+A S
Sbjct: 195 DACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACS 254

Query: 272 GLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISW 329
               +  G+   + + + + I   V     +ID+  + G L  +    + M  E  V  W
Sbjct: 255 HTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVW 314

Query: 330 NAMLVGYSKHG 340
            A+L     HG
Sbjct: 315 GALLGACRIHG 325


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/646 (35%), Positives = 369/646 (57%), Gaps = 37/646 (5%)

Query: 23  VPSFPPNPQNLKTLC------SNGQLTKALIE---MATLGLEMRFEEYDTLLNACVNQRT 73
           V +    P +L  +C      S+G L  +L     + + G+      + +LL A    + 
Sbjct: 32  VKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKH 91

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC----------------------LSD 111
               Q +HA +I+  +   +Y    L+  Y+K                         +  
Sbjct: 92  FNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDS 151

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            RK+FD M  R+VVSW  +I+  +Q     EALN+   M + +  P+ FT +++L     
Sbjct: 152 VRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTE 211

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 GK+IH   I+  F+  +++GSSL+DMYAK  ++  +   F  L  RD +S  +I
Sbjct: 212 HANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSI 271

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+G  Q G  ++ +  FR++  E +    V+++SV+ A + L AL  GKQ+H++++R   
Sbjct: 272 IAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGF 331

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMGREVVELF 349
                + +SL+DMY+KCG++  +R +F+   M +R ++SW A+++G + HG   + V LF
Sbjct: 332 DDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLF 391

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDM 408
             M  +  VKP  V ++AVL+ CSH G+ D G   F+ +   +D G  P +EHY  V D+
Sbjct: 392 EEMLVDG-VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQ--RDFGVAPGLEHYAAVADL 448

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA +FI NM  EPT ++  +LL ACR H N+++ E V  +++ ++P N G +
Sbjct: 449 LGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAH 508

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           VI+SN+Y++A RW D  ++R  M++  + K P  SWIE+   +HTF A D+SHP  ++++
Sbjct: 509 VIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKIN 568

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +  L  + ++ GYV D + VL+DVDEE K  +L  HSE+LA+ FG+I T  G  IRVI
Sbjct: 569 EALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVI 628

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KN+R+CVDCH   KF++K+ GR++ +RD +RFHH   G+CSCGDYW
Sbjct: 629 KNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/479 (43%), Positives = 321/479 (67%), Gaps = 3/479 (0%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+E T  +++ +CA     E GK +HS   +   + ++ V +++LDMY K   I  A+ V
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F  + E+DV+S T+++SG A+ G  +E++ LFRK+Q+  +  + +T   VL+A +   AL
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGAL 128

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             GK +H  + +FEI   +VL+ +L+DMY+KCGS+  + +VF  M  R V +WNAM+ G 
Sbjct: 129 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGL 188

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           + HG G + + LF+ M E +K+ PD VT++A+L  CSH G+ D GLA+F  + + K   E
Sbjct: 189 AMHGHGEDAISLFDQM-EXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN-KFQIE 246

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P +EHYGCVVD+L RA +V +AL FI+NMP +  + +  +LLGACR   + D+ E + +R
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRR 306

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHA 516
           ++E+EP++ G YV+LSNLYA   +W+   ++R+ MK K + K PG SWIEL+ ++H F A
Sbjct: 307 VIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVA 366

Query: 517 SDRSHPMREELSAKVKQLSVKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
            DRSH   E++ A +++++ +   + G+VP  + VL+D++EE+KE  L  HSEKLA+  G
Sbjct: 367 GDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALG 426

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LI TP G+PIR++KNLR+C DCH+F K  SKVY R++  RD++RFHH  EG+CSC D+W
Sbjct: 427 LISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 160/314 (50%), Gaps = 3/314 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L+ AC     L  G+ +H++  +      + +   ++  Y KC+ +  A+++F+ +RE+
Sbjct: 16  SLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREK 75

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SWT+M+S  ++  +  E+L LF +M     EP+E T   VL++CA     + GK IH
Sbjct: 76  DVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIH 135

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            LI K      + + ++L+DMYAK G I  A  VF  +  R+V +  A+I G A  G  E
Sbjct: 136 LLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGE 195

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSL 301
           +AI LF +++ + ++ + VT+ ++L A S    +  G  +   +  +F+I   +     +
Sbjct: 196 DAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCV 255

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +D+  +   +  +    +NM  +      A L+G  + G   ++ E   + R   +++PD
Sbjct: 256 VDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE--KIXRRVIELEPD 313

Query: 362 SVTYLAVLSGCSHG 375
           S     +LS    G
Sbjct: 314 SCGRYVMLSNLYAG 327



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 97/174 (55%), Gaps = 3/174 (1%)

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           +++ +  + VT  S++ A + L  L  GK +HS+     +   + + N+++DMY KC  +
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             ++ VF+ + E+ V+SW +ML G +K G  +E + LF  M + +K++PD +T + VLS 
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKM-QLHKIEPDEITLVGVLSA 121

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           C+  G  D+G  + H ++D K     ++     +VDM  + G +  AL+  + M
Sbjct: 122 CAQTGALDQGKYI-HLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 173


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/621 (38%), Positives = 351/621 (56%), Gaps = 52/621 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +      G++VH   I++     V++   ++  Y KC  + +A K+F  M+ +
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK 428

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-------------------------- 156
           +VVSW AM++ YSQ      AL+LF RM   + E                          
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 157 ---------PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS--NFE------SHIYVGSS 199
                    PN  T  ++L++C        GK+ H   IK   N +        + V + 
Sbjct: 489 RQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVING 548

Query: 200 LLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEG 255
           L+DMYAK      AR +F+ +   +RDVV+ T +I GYAQ G    A++LF  +    + 
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYS 314
           +  N  T +  L A + LAAL  G+QVH++VLR F     + + N LIDMYSK G +  +
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           + VFDNM +R  +SW +++ GY  HG G + + +F+ MR+   V PD +T+L VL  CSH
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLV-PDGITFLVVLYACSH 727

Query: 375 GGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
            GM D G+  F+ +   KD G +P  EHY C+VD+ GRAGR+GEA++ I  MP EPT  +
Sbjct: 728 SGMVDHGINFFNRM--SKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVV 785

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             +LL ACR+H NV++GEF   RL+E+E  N G+Y +LSN+YA+A RW+DV R+R  MK 
Sbjct: 786 WVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKR 845

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
             + K PG SWI+  + + TF+  DRSHP  +++   +  L  + K  GYVP  S  L+D
Sbjct: 846 TGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHD 905

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           VD+E+K  +L  HSEKLAL +G++     APIR+ KNLRIC DCH+   ++SK+   ++ 
Sbjct: 906 VDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEII 965

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           LRD +RFHH   G+CSC  YW
Sbjct: 966 LRDSSRFHHFKNGSCSCKGYW 986



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 232/504 (46%), Gaps = 90/504 (17%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M +LG       +  +  AC N  +L  G  +HA + ++ +   V++   ++  Y KC 
Sbjct: 249 QMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG 308

Query: 108 CLSDARKMFDEMRERNV---VSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFA 163
            L  A  MFD++  R +   VSW +++SAY   + +  AL LF +M  R    P+  +  
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLV 368

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-- 221
            +L +CA       G+Q+H   I+S     ++VG++++DMYAK G++ EA  VF+ +   
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK 428

Query: 222 ---------------------------------ERDVVSCTAIISGYAQLGLDEEAIELF 248
                                            E DVV+ TA+I+GYAQ G   EA+++F
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI------PSYVVLQ--NS 300
           R++   G   N VT  S+L+A   + AL HGK+ H + ++F +      P    L+  N 
Sbjct: 489 RQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVING 548

Query: 301 LIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFNLMREENK- 357
           LIDMY+KC S   +R++FD++S  +R V++W  M+ GY++HG     ++LF+ M + +K 
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY--GCVVDMLGRAGRV 415
           +KP+  T    L  C+       G  V   ++     F   +  +   C++DM  ++G V
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVL---RNFYGSVMLFVANCLIDMYSKSGDV 665

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
             A     NMP                            QR       NA ++  L   Y
Sbjct: 666 DTAQIVFDNMP----------------------------QR-------NAVSWTSLMTGY 690

Query: 476 ASAGRWEDVTRVRELMKEKAVTKD 499
              GR ED  RV + M++  +  D
Sbjct: 691 GMHGRGEDALRVFDEMRKVPLVPD 714



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 23/374 (6%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V  W  +I          +   L+ +M      P+ +TF  V  +CA      LG  +H
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQLG 239
           + + +S F S+++V ++++ MY K G +  A  +F+ L  R   D+VS  +++S Y    
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWAS 342

Query: 240 LDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
               A+ LF K+    ++S + ++  ++L A + LAA   G+QVH   +R  +   V + 
Sbjct: 343 DANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVG 402

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+++DMY+KCG +  + +VF  M  + V+SWNAM+ GYS+ G     + LF  M EEN +
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN-I 461

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE- 417
           + D VT+ AV++G +  G     L VF ++ DC  G  P +     +V +L     VG  
Sbjct: 462 ELDVVTWTAVITGYAQRGQGCEALDVFRQMCDC--GSRPNVV---TLVSLLSACVSVGAL 516

Query: 418 ---------ALEFIKNMPF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG- 466
                    A++FI N+   +P A  L  + G   ++      E   +    + P++   
Sbjct: 517 LHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDV 576

Query: 467 -NYVILSNLYASAG 479
             + ++   YA  G
Sbjct: 577 VTWTVMIGGYAQHG 590


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/545 (41%), Positives = 342/545 (62%), Gaps = 15/545 (2%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V  RT +I  Y +   L++AR++FDEM  RNV+SWT MIS Y Q      A  LF  M  
Sbjct: 171 VVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM-- 228

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIH--SLIIKSNFESHIYVGSSLLDMYAKAGRI 210
              E NE ++  +L       G+  G +I   S +  +     +   ++++  + + G +
Sbjct: 229 --PEKNEVSWTAML------MGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEV 280

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +AR VF+ + E+D  + +A+I  Y + G + EA+ LF  +Q EG+ SN+ +  SVL+  
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + LA+L HG+QVH+ +++ +  S V + + LI MY KCG L  +R++FD  S + ++ WN
Sbjct: 341 ASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +++ GY++HG+  E +++F+ M     +  D VT++ VLS CS+ G    GL +F E + 
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSG-MATDGVTFVGVLSACSYTGKVKEGLEIF-ESMK 458

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
            K   EP+ EHY C+VD+LGRAG V +A++ I+ MP E  A I G+LLGACR H N+++ 
Sbjct: 459 SKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLA 518

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E   ++L+++EP+NAG Y++LSN+YAS GRW DV  +R  M+ K V+K PG SWIE+++ 
Sbjct: 519 EVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKR 578

Query: 511 LHTFHAS-DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
           +H F       HP    +   +++L    +EAGY PD S VL+DVDEE+K + L  HSE+
Sbjct: 579 VHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSER 638

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGL+  PEG PIRV+KNLR+C DCH+  K ++K+ GR++ LRD NRFHH  +G CS
Sbjct: 639 LAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCS 698

Query: 630 CGDYW 634
           C DYW
Sbjct: 699 CRDYW 703



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 169/338 (50%), Gaps = 25/338 (7%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y K   +S+ARK FD M ERNVVSWTAM+  Y Q+    EA  LF +M     E N
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKN 139

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L         +  + +  ++   +    +   ++++  Y + GR+ EAR +F+
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVKD----VVARTNMISGYCQEGRLAEARELFD 195

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P R+V+S T +ISGY Q G  + A +LF  +  +    N V++ ++L   +       
Sbjct: 196 EMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYT------Q 245

Query: 279 GKQVHSHVLRFE-IP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           G ++      F+ +P   VV  N++I  + + G +  +R+VFD + E+   +W+AM+  Y
Sbjct: 246 GGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVY 305

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            + G   E + LF LM+ E  V+ +  + ++VLS C+     D G  V  E+V  K  F+
Sbjct: 306 ERKGFEVEALNLFALMQREG-VQSNFPSLISVLSVCASLASLDHGRQVHAELV--KSQFD 362

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            ++     ++ M  + G + +A +      F P   ++
Sbjct: 363 SDVFVASVLITMYVKCGDLVKARQIFDR--FSPKDIVM 398



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 56/279 (20%)

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           I  Y +   +  AR++FDEM ++ +VSW +M++ Y Q     EA  LF +M     E N 
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM----PERNT 78

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            ++                                   + L+  Y K   + EAR  F+ 
Sbjct: 79  VSW-----------------------------------NGLISGYVKNRMVSEARKAFDT 103

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +PER+VVS TA++ GY Q GL  EA  LF ++  +    N V++  +L  L  +  +   
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK----NVVSWTVMLGGLIQVRRIDEA 159

Query: 280 KQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           + +      F+I     VV + ++I  Y + G L  +R +FD M  R VISW  M+ GY 
Sbjct: 160 RGL------FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYV 213

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           ++G      +LF +M E+N+     V++ A+L G + GG
Sbjct: 214 QNGQVDVARKLFEVMPEKNE-----VSWTAMLMGYTQGG 247



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G++  F    ++L+ C +  +L  G++VHA ++K+ +   V++ + LI  Y KC  
Sbjct: 321 MQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGD 380

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++FD    +++V W ++I+ Y+Q     EAL +F  M  S    +  TF  VL++
Sbjct: 381 LVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSA 440

Query: 169 CAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C+     + G +I  S+  K   E      + ++D+  +AG +++A  + + +P    V 
Sbjct: 441 CSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMP----VE 496

Query: 228 CTAIISGYAQLG 239
             AII G A LG
Sbjct: 497 ADAIIWG-ALLG 507



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 127/301 (42%), Gaps = 56/301 (18%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +S +  YA+ G+I  AR VF+ +P++ +VS  ++++GY Q     EA  LF K+     +
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           S                                        N LI  Y K   ++ +R+ 
Sbjct: 80  S---------------------------------------WNGLISGYVKNRMVSEARKA 100

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M ER V+SW AM+ GY + G+  E   LF  M E+N      V++  +L G      
Sbjct: 101 FDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN-----VVSWTVMLGGLIQVRR 155

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            D    +F +I+  KD     +     ++    + GR+ EA E    MP     +    +
Sbjct: 156 IDEARGLF-DIMPVKD-----VVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMI 209

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
            G  + +  VD    V ++L E+ PE N  ++  +   Y   GR E+ + + + M  KAV
Sbjct: 210 SGYVQ-NGQVD----VARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV 264

Query: 497 T 497
            
Sbjct: 265 V 265


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 361/603 (59%), Gaps = 20/603 (3%)

Query: 40  GQLTKALIEMATLGLEMRFE----EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           G+  +  +E+    LE  FE       ++++AC    ++R G ++H+  ++  +     +
Sbjct: 232 GECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACV 291

Query: 96  RTRLIVFYNKC---ECLSDARKMFDEMRERNVVSWTAMISAYSQKA-HSFEALNLFIRML 151
              L+  Y K    + +  A K+F+ MR+ +V+SWTA+IS Y Q      + + LF  ML
Sbjct: 292 SCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEML 351

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               +PN  T++++L +CA     + G+Q+H+ +IKSN  +   VG++L+ MYA++G + 
Sbjct: 352 NESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCME 411

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           EAR VF  L ER ++SC   I+      LD       R  +++  IS+  T+AS+++A +
Sbjct: 412 EARRVFNQLYERSMISC---ITEGRDAPLDH------RIGRMDMGISSS-TFASLISAAA 461

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            +  L  G+Q+H+  L+    S   + NSL+ MYS+CG L  + R F+ + +R VISW +
Sbjct: 462 SVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTS 521

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ G +KHG     + LF+ M     VKP+ VTY+AVLS CSH G+   G   F  +   
Sbjct: 522 MISGLAKHGYAERALSLFHDMILTG-VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQR- 579

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  P +EHY C+VD+L R+G V EALEFI  MP +  A +  +LLGACR H N+++GE
Sbjct: 580 DHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGE 639

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
              + ++E+EP +   YV+LSNLYA AG W++V R+R  M++  + K+ G SW+E++   
Sbjct: 640 IAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTT 699

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D SHP  +++  K+  L  + K  GYVPD S VL+D+ +E KE+ LL HSEK+A
Sbjct: 700 HEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIA 759

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGLI T    PIR+ KNLR+C DCH+  K++SK   R++ LRD NRFH + +G CSCG
Sbjct: 760 VAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCG 819

Query: 632 DYW 634
           +YW
Sbjct: 820 EYW 822



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 174/330 (52%), Gaps = 21/330 (6%)

Query: 74  LRGGQRVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMI 131
           LR G+ +H  +++         +   L+  Y++C  ++ AR +FD MR  R++VSWTAM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL--------GKQIHS 183
           S  ++     E+L L   ML S   PN +T   V  +C   F  EL           +H 
Sbjct: 124 SCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC---FPHELYCLVGGVVLGLVHK 180

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + +   + + I VGS+L+DM A+ G +  AR VF+ L E+ VV  T +IS Y Q    EE
Sbjct: 181 MGL---WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE 237

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E+F     +G   +  T +S+++A + L ++  G Q+HS  LR    S   +   L+D
Sbjct: 238 AVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVD 297

Query: 304 MYSKCG---SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG-REVVELFNLMREENKVK 359
           MY+K     ++ Y+ +VF+ M +  VISW A++ GY + G+   +V+ LF  M  E+ +K
Sbjct: 298 MYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNES-IK 356

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           P+ +TY ++L  C++    D G  V   ++
Sbjct: 357 PNHITYSSILKACANISDHDSGRQVHAHVI 386



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 137/224 (61%), Gaps = 4/224 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ ARK+FD + E+ VV WT +IS Y Q   + EA+ +F+  L    EP+ +T ++++++
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISA 263

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG---RIHEARGVFECLPERDV 225
           C       LG Q+HSL ++  F S   V   L+DMYAK+     +  A  VFE + + DV
Sbjct: 264 CTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDV 323

Query: 226 VSCTAIISGYAQLGLDEEAIE-LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +S TA+ISGY Q G+ E  +  LF ++  E +  N++TY+S+L A + ++    G+QVH+
Sbjct: 324 ISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHA 383

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           HV++    +   + N+L+ MY++ G +  +RRVF+ + ER++IS
Sbjct: 384 HVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS 427


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 356/581 (61%), Gaps = 4/581 (0%)

Query: 56  MRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           MR  EY   T++++C +   +  G + H + +K+      Y++  LI  Y++   +  A 
Sbjct: 125 MRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 184

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
            ++ E+   +V S+  +I+   +  +  EAL +  RM+      +  T+ T    C+   
Sbjct: 185 SVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLK 244

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              LG Q+H  + ++  E   +V S+++DMY K G I  AR VF  L  ++VVS TAI++
Sbjct: 245 DLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILA 304

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
            Y+Q G  EEA+  F +++V+G++ N  T+A +L + +G++ALGHGK +H+ + +     
Sbjct: 305 AYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFED 364

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
           ++++ N+LI+MYSK GS+  + +VF  M  R  I+W+AM+ G S HG+GRE + +F  M 
Sbjct: 365 HIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEML 424

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
              +  P  VT++ VLS C+H G    G    ++++  + G EP +EHY C+V +L +AG
Sbjct: 425 AAKEC-PHYVTFVGVLSACAHLGSVQEGFYYLNQLMK-QTGIEPGVEHYTCIVGLLCKAG 482

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
           R+ EA  F+K+ P +       +LL AC VH N  +G+ V + +++++P + G Y++LSN
Sbjct: 483 RLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSN 542

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQ 533
           +YA A RW+ V ++R+LM+E+ V K+PG SWIE+   +H F +  ++HP   ++  KV++
Sbjct: 543 MYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQE 602

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L    +  GYVPD++ V +DV++EQK + +  HSEKLA+ +GL+ TP GAPIRVIKNLR+
Sbjct: 603 LLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRM 662

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CVDCH+  K +SKV  R + +RD NRFH   +G CSC DYW
Sbjct: 663 CVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 202/397 (50%), Gaps = 12/397 (3%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFY 103
           L++ +T+G  +  E    LL    + + L+ G+ +HAH+I T    +  +     LI  Y
Sbjct: 15  LLKSSTVGHPL--EHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLY 72

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTF 162
            KC+ +  AR +FD MR+RNVVSW A+++ Y       E L LF  M+  D   PNE+ F
Sbjct: 73  AKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIF 132

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           AT+++SC+ +     G Q H   +KS    H YV ++L+ MY++   +  A  V+  +P 
Sbjct: 133 ATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPG 192

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
            DV S   II+G  + G   EA+E+  ++  E ++ + VTY +     S L  L  G QV
Sbjct: 193 LDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQV 252

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  + R        + +++IDMY KCG++  +R+VF+ +  + V+SW A+L  YS++G  
Sbjct: 253 HCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCF 312

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E +  F  M E + + P+  T+  +L+ C+  G+   G          K GFE  I   
Sbjct: 313 EEALNFFPEM-EVDGLLPNEYTFAVLLNSCA--GISALGHGKLLHTRIKKSGFEDHIIVG 369

Query: 403 GCVVDMLGRAGRVGEA----LEFIKNMPFEPTAAILG 435
             +++M  ++G +  A    LE I       +A I G
Sbjct: 370 NALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICG 406



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L     NG   +AL    EM   GL      +  LLN+C     L  G+ +H  + K+ +
Sbjct: 303 LAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGF 362

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              + +   LI  Y+K   +  A K+F EM  R+ ++W+AMI   S      EAL +F  
Sbjct: 363 EDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQE 422

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           ML +   P+  TF  VL++CA     + G   ++ L+ ++  E  +   + ++ +  KAG
Sbjct: 423 MLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAG 482

Query: 209 RIHEARGVFECLPER-DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           R+ EA    +  P + DVV+   ++S    +   GL ++  EL  ++   G +  Y+  +
Sbjct: 483 RLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMD-PGDVGTYILLS 541

Query: 265 SV 266
           ++
Sbjct: 542 NM 543


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/564 (39%), Positives = 357/564 (63%), Gaps = 9/564 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMRERNVVSWTAMISAYS 135
           ++ HA +++T         ++LI F        L+ ARK+F +M+  +      MI  Y+
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +  + +EA++L+  M+      + +T+  VL +CA     +LG++ H  ++K+ F S ++
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVE 254
           V ++L+  Y   G    A  VF+    RDVV+   +I+ +   GL E+A +L  ++ +++
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSH---VLRFEIPSYVVLQNSLIDMYSKCGSL 311
            +  + VT  S++ A + L  L  GK +HS+   + +FEI   +VL+ +L+DMY+KCGS+
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSI 267

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + +VF  M  R V +WNA++ G + HG G + + LF+ M E +K+ PD VT++A+L  
Sbjct: 268 DLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQM-EHDKLMPDDVTFIALLCA 326

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G+ D GLA+F  + + K   EP +EHYGCVVD+L RA +V +AL FI+NMP +  +
Sbjct: 327 CSHAGLVDEGLAMFQAMKN-KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS 385

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
            +  +LLGACR   + D+ E +G+R++E+EP++ G YV+LSNLYA   +W+   ++R+ M
Sbjct: 386 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 445

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK-EAGYVPDMSCV 550
           K K + K PG SWIEL+ ++H F A DRSH   E++ A +++++ +   + G+VP  + V
Sbjct: 446 KNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANV 505

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
           L+D++EE+KE  L  HSEKLA+  GLI TP G+PIR++KNLR+C DCH+F K  SKVY R
Sbjct: 506 LFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNR 565

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           ++  RD++RFHH  EG+CSC D+W
Sbjct: 566 EIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 160/340 (47%), Gaps = 23/340 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+ +    Y  +L AC     ++ G+R H  ++K  +   +++   LI FY+ C  
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLT 167
              A  +FDE   R+VV+W  MI+A+  K  S +A +L   M + D   P+E T  +++ 
Sbjct: 162 FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVP 221

Query: 168 SCAGAFGFELGKQIHSL---IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           +CA     E GK +HS    + K      + + ++L+DMYAK G I  A  VF  +  R+
Sbjct: 222 ACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 281

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           V +  A+I G A  G  E+AI LF +++ + ++ + VT+ ++L A S    +  G  +  
Sbjct: 282 VFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ 341

Query: 285 HVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG--- 340
            +  +F+I   +     ++D+  +   +  +    +NM  +      A L+G  + G   
Sbjct: 342 AMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHF 401

Query: 341 -----MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
                +GR V+EL          +PDS     +LS    G
Sbjct: 402 DLAEKIGRRVIEL----------EPDSCGRYVMLSNLYAG 431


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 361/650 (55%), Gaps = 46/650 (7%)

Query: 28  PNPQNLKTLCS-------NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           P+P    TL S       + +  K    +   G++     +     AC         + V
Sbjct: 127 PDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEV 186

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           H    +      V++   LI  Y KC+C+  AR++FD++  R+VVSWT++ S Y +    
Sbjct: 187 HDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFP 246

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
            + +++F  M  S  +PN  T +++L +CA     + GK+IH   ++     +++V S+L
Sbjct: 247 RKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSAL 306

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCT------------------------------- 229
           + +YAK   + EAR VF+ +P RDVVS                                 
Sbjct: 307 VSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADE 366

Query: 230 ----AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
               A+I G  + G  EEA+E+FRK+Q  G   N +T +S+L A S    L  GK++H +
Sbjct: 367 ATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCY 426

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           V R      +    +L+ MY+KCG L  SR VFD M  + V++WN M++  + HG G+E 
Sbjct: 427 VFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEA 486

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGC 404
           + LF+ M   ++V+P+SVT+  VLSGCSH  + + G+ +F+ +   +D   EP+  HY C
Sbjct: 487 LFLFDKMLL-SRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSM--GRDHLVEPDANHYSC 543

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           VVD+  RAGR+ EA +FI+ MP EPTA+  G+LL ACRV+ NV++ +   ++L EIEP N
Sbjct: 544 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 603

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            GNYV L N+  +A  W + ++VR LMKE+ +TK PG SW+++   +HTF   D+S+   
Sbjct: 604 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIES 663

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           +++   + +L  K K AGY PD   VL D+D+E+K + L  HSEKLA+ FG++     + 
Sbjct: 664 DKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 723

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IRV KNLRIC DCHN  K++SKV G  + +RD  RFHH   G CSC D W
Sbjct: 724 IRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 159/307 (51%), Gaps = 3/307 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           P +L  RLI         + AR++FD + + +  + + +ISA +    S EA+ ++  + 
Sbjct: 97  PSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ 156

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               +P+   F     +CA +      K++H    +    S ++VG++L+  Y K   + 
Sbjct: 157 ERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVE 216

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR VF+ L  RDVVS T++ S Y + G   + +++FR++   G+  N +T +S+L A +
Sbjct: 217 GARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACA 276

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L  L  GK++H   +R  +   + + ++L+ +Y+KC S+  +R VFD M  R V+SWN 
Sbjct: 277 ELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNG 336

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +L  Y K+    +   LF L    + V+ D  T+ AV+ GC   G  +  + +F ++   
Sbjct: 337 VLTAYFKNKEYEKGFSLF-LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-- 393

Query: 392 KDGFEPE 398
           K GF+P 
Sbjct: 394 KMGFKPN 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 8/209 (3%)

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           + +N  SH+  G  L+ +    G  + AR +F+ +P+ D  +C+ +IS     GL  EAI
Sbjct: 92  LPTNIPSHL--GLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAI 149

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           +++  LQ  G+  +   + +   A +        K+VH    R  + S V + N+LI  Y
Sbjct: 150 KIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAY 209

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            KC  +  +RRVFD++  R V+SW ++   Y K G  R+ +++F  M     VKP+ +T 
Sbjct: 210 GKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTV 268

Query: 366 LAVLSGCSH-----GGMEDRGLAVFHEIV 389
            ++L  C+       G E  G AV H +V
Sbjct: 269 SSILPACAELKDLKSGKEIHGFAVRHGMV 297


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 352/576 (61%), Gaps = 9/576 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN---KCECLSDARKMFDEM 119
           +LL  C + R L+   ++ A  IKT     + + T+ I F +       +  A  +FD++
Sbjct: 25  SLLPKCTSLRELK---QLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQI 81

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            + ++V +  M   Y++      A  LF ++L S   P+++TF ++L +CA     E G+
Sbjct: 82  PQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGR 141

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H L IK     ++YV  +L++MY     +  AR VF+ + E  VV+  A+I+GYA+  
Sbjct: 142 QLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGS 201

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ LFR+LQ   +    VT  SVL++ + L AL  GK +H +V +     +V +  
Sbjct: 202 RPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDT 261

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDMY+KCGSL  +  VF+NM+ R   +W+AM++ Y+ HG G + V LF  MR+    +
Sbjct: 262 ALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAG-TE 320

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD +T+L +L  CSH G+ + G   F+ + D K G  P I+HYGC+VD+LGRAGR+ EA 
Sbjct: 321 PDEITFLGLLYACSHTGLVEEGFEYFYGMRD-KYGVIPGIKHYGCMVDLLGRAGRLEEAY 379

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI  +P  PT  +  +LL AC  H NV++G+ V +++ E++  + G+Y+ILSNL A AG
Sbjct: 380 EFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAG 439

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWEDV  VR+LM E+ V K PG S +E++ ++H F + D  H +  +L   + +L  + K
Sbjct: 440 RWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELK 499

Query: 540 EAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
             GYVP+ S V + D+++E+KE  L  HSEKLA+TFGL+ TP G  IRV+KNLR+C DCH
Sbjct: 500 LVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCH 559

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + AK +S ++ R++ LRD  RFHH  +G CSC DYW
Sbjct: 560 SAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 5/292 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL AC + + L  G+++H   IK      VY+   LI  Y  C  +  AR++FD++ 
Sbjct: 124 FPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIW 183

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E  VV++ AMI+ Y++ +   EAL+LF  +   + +P + T  +VL+SCA     +LGK 
Sbjct: 184 EPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKW 243

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  + K+ F   + V ++L+DMYAK G + +A  VFE +  RD  + +A+I  YA  G 
Sbjct: 244 MHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGH 303

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQN 299
             +A+ LF++++  G   + +T+  +L A S    +  G +  +    ++ +   +    
Sbjct: 304 GLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYG 363

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVE 347
            ++D+  + G L  +      +  R T I W  +L     HG   +G+ V+E
Sbjct: 364 CMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIE 415


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/648 (35%), Positives = 364/648 (56%), Gaps = 49/648 (7%)

Query: 26  FPPN---PQNLKTLCSNG---QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79
           FPP       ++   S+G   Q   + I M   GL      + ++L +C     L  G+ 
Sbjct: 68  FPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGES 127

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA--------------------------- 112
           +H ++I+      +Y    L+  Y+K   L ++                           
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 113 -----RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
                RK+F+ M E+++VSW  +I+  ++     E L +   M  ++ +P+ FT ++VL 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
             A       GK+IH   I+   ++ IYV SSL+DMYAK  R+ ++  VF  L ERD +S
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGIS 307

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             +II+G  Q GL +E +  FR++ +  +     +++S++ A + L  L  GKQ+H ++ 
Sbjct: 308 WNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 367

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R      + + +SL+DMY+KCG++  ++++FD M  R ++SW AM++G + HG   + +E
Sbjct: 368 RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIE 427

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVV 406
           LF  M  E  +K       AVL+ CSHGG+ D     F+ +   +D G  P +EHY  V 
Sbjct: 428 LFEQMETEG-IK-------AVLTACSHGGLVDEAWKYFNSMT--RDFGIAPGVEHYAAVS 477

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAGR+ EA +FI  M   PT +I  +LL ACRVH N+D+ E V  R++E++P N G
Sbjct: 478 DLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTG 537

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            Y++L+N+Y++A RW++  + R  M+   + K P  SWIE+   ++ F A D SHP  E+
Sbjct: 538 AYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEK 597

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +   ++ L    ++ GYVPD S V +DV+EEQK+ ++  HSE+LA+ FG+I TP G  IR
Sbjct: 598 IREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIR 657

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V KNLR+C DCH   KF+SK+ GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 658 VTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 182/375 (48%), Gaps = 36/375 (9%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y+    L D+ ++F+ +     ++W ++I  Y+      ++L  FI ML S   P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-------------AG 208
           F +VL SCA      LG+ +H  II+   +  +Y G++L++MY+K             AG
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 209 RIHE-------------------ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            + +                    R +FE +PE+D+VS   II+G A+ GL EE + + R
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++    +  +  T +SVL  ++    +  GK++H   +R  + + + + +SLIDMY+KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  S RVF  ++ER  ISWN+++ G  ++G+  E +  F  M    K+KP S ++ +++
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMA-KIKPKSYSFSSIM 347

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             C+H      G  +   I   ++GF+  I     +VDM  + G +  A +    M    
Sbjct: 348 PACAHLTTLHLGKQLHGYIT--RNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 430 TAAILGSLLGACRVH 444
             +    ++G C +H
Sbjct: 406 MVSWTAMIMG-CALH 419


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 354/601 (58%), Gaps = 27/601 (4%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   + L    +M  LG+++      ++L  C N  TL  G+ VH+  IK+ +   + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A ++F++M ERNVVSWT+MI+ Y++   S  A+ L  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +     ++L +CA +   + GK +H  I  +N ES+++V ++L+DMYAK G +  A 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAAN 407

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D++S   +I    +L  D                    T A VL A + L+
Sbjct: 408 SVFSTMVVKDIISWNTMI---GELKPDSR------------------TMACVLPACASLS 446

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GK++H ++LR    S   + N+L+D+Y KCG L  +R +FD +  + ++SW  M+ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG G E +  FN MR+   ++PD V+++++L  CSH G+ ++G   F+ I+     
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY-IMKNDFN 564

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP++EHY C+VD+L R G + +A EF++ +P  P A I G+LL  CR ++++++ E V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN G YV+L+N+YA A +WE+V R+RE + ++ + K+PG SWIE+   ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLF 684

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              ++ SHP  + + + +K++  K KE G+ P     L + DE QKE  L GHSEKLA+ 
Sbjct: 685 VSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P    IRV KNLR+C DCH  AKF+SK   R++ LRD NRFHH  +G CSC  +
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGF 804

Query: 634 W 634
           W
Sbjct: 805 W 805



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/557 (26%), Positives = 244/557 (43%), Gaps = 93/557 (16%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPP-------NPQNLKTL--CSNGQLTKA--LIEM 49
           + +P  +++ FS +  +   + + + P           N K L  C  G L  A  LI M
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICM 91

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
                E+  + Y ++L  C   ++   G++VH+ +          L  +L+ FY  C  L
Sbjct: 92  CQKS-ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDL 150

Query: 110 SDARKMFDEMRERNV--------------------------------------------- 124
            + R++FD M ++NV                                             
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDK 210

Query: 125 ------VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
                 +SW +MIS Y     +   L ++ +M+    + +  T  +VL  CA +    LG
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K +HSL IKS+FE  I   ++LLDMY+K G +  A  VFE + ER+VVS T++I+GY + 
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  + AI+L ++++ EG+  + V   S+L A +   +L +GK VH ++    + S + + 
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+L+DMY+KCGS+  +  VF  M  + +ISWN M+                       ++
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------------GEL 428

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           KPDS T   VL  C+     +RG  +   I+  ++G+  +      +VD+  + G +G A
Sbjct: 429 KPDSRTMACVLPACASLSALERGKEIHGYIL--RNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
                 +P +   +    + G     Y N  I  F   R   IEP+       +S LYA 
Sbjct: 487 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYAC 543

Query: 478 --AGRWEDVTRVRELMK 492
             +G  E   R   +MK
Sbjct: 544 SHSGLLEQGWRFFYIMK 560


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/547 (42%), Positives = 344/547 (62%), Gaps = 20/547 (3%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V + T +I  Y +   L +AR++FDEM+ RNV +WT M+S Y++      A  LF  M  
Sbjct: 176 VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM-- 233

Query: 153 SDTEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
              E NE ++  +L     +      FEL     ++ +K      I   + ++  +  AG
Sbjct: 234 --PERNEVSWTAMLMGYTQSGRMKEAFEL---FEAMPVK-----WIVACNEMILQFGLAG 283

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +H AR +FE + ERD  +  A+I  + + GLD EA+ LF ++Q EG+  N+ +  SVL+
Sbjct: 284 EMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLS 343

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
             + LA+L HG+QVH+ ++R E    + + + LI MY KCG L  ++ +F+    + V+ 
Sbjct: 344 VCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVM 403

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN+M+ GYS+HG+G E + +F+ M     V+PD VT++ VLS CS+ G    G  +F E 
Sbjct: 404 WNSMITGYSQHGLGEEALNVFHDMCSSG-VQPDEVTFIGVLSACSYSGKVKEGFEIF-EA 461

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           + C    EP IEHY C+VD+LGRAGRV EA+E ++ MP EP A + G+LLGACR H  +D
Sbjct: 462 MKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLD 521

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E   ++L ++EP+NAG YV+LS++YA+ GRW DV  +R+ +  + V K PG SWIE++
Sbjct: 522 LAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVE 580

Query: 509 QILHTFHASD-RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           + +H F   D +SHP +  ++  +++LS   +EAGY PD S VL+DVDEE+K   L  HS
Sbjct: 581 KKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHS 640

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ +GL+  PEG PIRV+KNLR+C DCH+  K ++KV GR++ LRD NRFHH  +G+
Sbjct: 641 ERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGS 700

Query: 628 CSCGDYW 634
           CSC D+W
Sbjct: 701 CSCKDFW 707



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 168/395 (42%), Gaps = 82/395 (20%)

Query: 97  TRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           T  I  Y +   + +ARK+FD   + +R + SW AM+SAY +     +AL LF +M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM---- 78

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + N  +F                                   + ++  Y K G + +AR
Sbjct: 79  PQRNTVSF-----------------------------------NGMISGYVKNGMVADAR 103

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +PER+VVS T+++ GY Q G+ EEA +LF ++       N V++  ++  L   +
Sbjct: 104 KVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR----NVVSWTVMIGGLLKES 159

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
            +   K++   +   +    VV+  ++I  Y + G L  +R +FD M  R V +W  M+ 
Sbjct: 160 RIDDAKKLFDMIPEKD----VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVS 215

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE-----IV 389
           GY+K+G      +LF +M E N+     V++ A+L G +  G       +F       IV
Sbjct: 216 GYAKNGRVDVARKLFEVMPERNE-----VSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV 270

Query: 390 DCKD-----GFEPEIEH---------------YGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            C +     G   E+                 +  ++ +  R G   EAL     M  E 
Sbjct: 271 ACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREG 330

Query: 430 TA---AILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
            A     + S+L  C    ++D G  V  RL+  E
Sbjct: 331 VALNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 5/209 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+ + F    ++L+ C +  +L  G++VHA ++++ +   +Y+ + LI  Y KC  
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGD 385

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A+ +F+    ++VV W +MI+ YSQ     EALN+F  M  S  +P+E TF  VL++
Sbjct: 386 LVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSA 445

Query: 169 CAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVV 226
           C+ +   + G +I  ++      E  I   + ++D+  +AGR+ EA  + E +P E D +
Sbjct: 446 CSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAI 505

Query: 227 SCTAIISG---YAQLGLDEEAIELFRKLQ 252
              A++     + +L L E A+E   KL+
Sbjct: 506 VWGALLGACRNHMKLDLAEVAVEKLAKLE 534


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 361/650 (55%), Gaps = 46/650 (7%)

Query: 28  PNPQNLKTLCS-------NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           P+P    TL S       + +  K    +   G++     +     AC         + V
Sbjct: 41  PDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEV 100

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           H    +      V++   LI  Y KC+C+  AR++FD++  R+VVSWT++ S Y +    
Sbjct: 101 HDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFP 160

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
            + +++F  M  S  +PN  T +++L +CA     + GK+IH   ++     +++V S+L
Sbjct: 161 RKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSAL 220

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCT------------------------------- 229
           + +YAK   + EAR VF+ +P RDVVS                                 
Sbjct: 221 VSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADE 280

Query: 230 ----AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
               A+I G  + G  EEA+E+FRK+Q  G   N +T +S+L A S    L  GK++H +
Sbjct: 281 ATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCY 340

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           V R      +    +L+ MY+KCG L  SR VFD M  + V++WN M++  + HG G+E 
Sbjct: 341 VFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEA 400

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGC 404
           + LF+ M   ++V+P+SVT+  VLSGCSH  + + G+ +F+ +   +D   EP+  HY C
Sbjct: 401 LFLFDKMLL-SRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSM--GRDHLVEPDANHYSC 457

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           VVD+  RAGR+ EA +FI+ MP EPTA+  G+LL ACRV+ NV++ +   ++L EIEP N
Sbjct: 458 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 517

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            GNYV L N+  +A  W + ++VR LMKE+ +TK PG SW+++   +HTF   D+S+   
Sbjct: 518 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIES 577

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           +++   + +L  K K AGY PD   VL D+D+E+K + L  HSEKLA+ FG++     + 
Sbjct: 578 DKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 637

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IRV KNLRIC DCHN  K++SKV G  + +RD  RFHH   G CSC D W
Sbjct: 638 IRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 159/307 (51%), Gaps = 3/307 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           P +L  RLI         + AR++FD + + +  + + +ISA +    S EA+ ++  + 
Sbjct: 11  PSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ 70

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               +P+   F     +CA +      K++H    +    S ++VG++L+  Y K   + 
Sbjct: 71  ERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVE 130

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR VF+ L  RDVVS T++ S Y + G   + +++FR++   G+  N +T +S+L A +
Sbjct: 131 GARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACA 190

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L  L  GK++H   +R  +   + + ++L+ +Y+KC S+  +R VFD M  R V+SWN 
Sbjct: 191 ELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNG 250

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +L  Y K+    +   LF L    + V+ D  T+ AV+ GC   G  +  + +F ++   
Sbjct: 251 VLTAYFKNKEYEKGFSLF-LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-- 307

Query: 392 KDGFEPE 398
           K GF+P 
Sbjct: 308 KMGFKPN 314



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 8/209 (3%)

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           + +N  SH+  G  L+ +    G  + AR +F+ +P+ D  +C+ +IS     GL  EAI
Sbjct: 6   LPTNIPSHL--GLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAI 63

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           +++  LQ  G+  +   + +   A +        K+VH    R  + S V + N+LI  Y
Sbjct: 64  KIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAY 123

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            KC  +  +RRVFD++  R V+SW ++   Y K G  R+ +++F  M     VKP+ +T 
Sbjct: 124 GKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTV 182

Query: 366 LAVLSGCSH-----GGMEDRGLAVFHEIV 389
            ++L  C+       G E  G AV H +V
Sbjct: 183 SSILPACAELKDLKSGKEIHGFAVRHGMV 211


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 355/606 (58%), Gaps = 40/606 (6%)

Query: 33   LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
            +++  +N   + AL+    MA  G++     Y  +L A      L  G ++HA +++   
Sbjct: 1098 IRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 1157

Query: 90   RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               V++   LI  Y KC CL +A ++ DZM  R+VVSW ++++  ++     +AL +   
Sbjct: 1158 DLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 1217

Query: 150  MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
            M     +P+  T A++L +                           V ++ LD       
Sbjct: 1218 MELLGLKPDAGTMASLLPA---------------------------VTNTCLD------N 1244

Query: 210  IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
            +   + +F  L  + +VS   +I+ Y    +  EA+++F +++   +  + ++ ASVL A
Sbjct: 1245 VSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPA 1304

Query: 270  LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
               L+AL  G+++H +V+R  +   ++L+N+LIDMY+KCG L Y+R VFD M  R V+SW
Sbjct: 1305 CGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSW 1364

Query: 330  NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
             +M+  Y  +G GR+ V LF+ M++   + PDS+ +++VLS CSH G+ D G   F  + 
Sbjct: 1365 TSMISAYGMNGKGRDAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMT 1423

Query: 390  D-CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + CK    P IEH+ C+VD+LGRAG+V EA  FIK MP EP   + G+LL ACRV+ N+ 
Sbjct: 1424 EECK--IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMI 1481

Query: 449  IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
            IG     +L ++ PE +G YV+LSN+YA AGRWEDVT VR +MK K + K PG S  ELD
Sbjct: 1482 IGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELD 1541

Query: 509  QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
              +HTF A D+SHP  +++  ++  L  K KEAGYVP+    L+DV+EE KE  L  HSE
Sbjct: 1542 NRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSE 1601

Query: 569  KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
            KLA+ F ++ T  G+PIR+ KNLR+C DCH  AK +SK+ GR++++RD NRFHH   G C
Sbjct: 1602 KLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVC 1661

Query: 629  SCGDYW 634
            SCGDYW
Sbjct: 1662 SCGDYW 1667



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 168/333 (50%), Gaps = 36/333 (10%)

Query: 95   LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
            L  +L+  Y  C      R +FDE+ ++NVV +  MI +Y       +AL +F  M    
Sbjct: 1062 LGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHG 1121

Query: 155  TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             +P+ +T+  VL + +G+    +G QIH+ +++   + +++VG+ L+ MY K G + EA 
Sbjct: 1122 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 1181

Query: 215  GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
             V + +P RDVVS  ++++G A+ G  ++A+E+ +++++ G+  +  T AS+L A++   
Sbjct: 1182 RVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT--- 1238

Query: 275  ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
                                    N+ +D      ++++ + +F  ++ ++++SWN M+ 
Sbjct: 1239 ------------------------NTCLD------NVSFVKEMFMKLANKSLVSWNVMIA 1268

Query: 335  GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
             Y  + M  E V++F L  E++ V PD+++  +VL  C        G  + HE V  +  
Sbjct: 1269 VYMNNSMPAEAVDIF-LQMEDHAVDPDAISIASVLPACGDLSALLLGRRI-HEYV-VRKR 1325

Query: 395  FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
             +P +     ++DM  + G +  A E    M F
Sbjct: 1326 LQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 1358



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 39/346 (11%)

Query: 179  KQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            K++HS I I  +  S+  +G  L+  YA  G     R +F+ +P+++VV    +I  Y  
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 238  LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
              L  +A+ +F+ +   G+  ++ TY  VL A SG   L  G Q+H+ V+R  +   V +
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 1163

Query: 298  QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             N LI MY KCG L  + RV D M  R V+SWN+++ G +++G   + +E+   M E   
Sbjct: 1164 GNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM-ELLG 1222

Query: 358  VKPDSVTYLAVLSGCSHGGMEDRGLA--VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            +KPD+ T  ++L   ++  +++      +F ++ +        +  +  ++ +       
Sbjct: 1223 LKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLAN------KSLVSWNVMIAVYMNNSMP 1276

Query: 416  GEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGE-FVGQRLME------IEP--- 462
             EA++    M     +P A  + S+L AC      D+    +G+R+ E      ++P   
Sbjct: 1277 AEAVDIFLQMEDHAVDPDAISIASVLPACG-----DLSALLLGRRIHEYVVRKRLQPNLL 1331

Query: 463  -ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
             ENA     L ++YA  G  E    V + MK + V      SW  +
Sbjct: 1332 LENA-----LIDMYAKCGCLEYAREVFDQMKFRDVV-----SWTSM 1367


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/635 (37%), Positives = 364/635 (57%), Gaps = 14/635 (2%)

Query: 12  SSLTFTQQQLTVPSFPPNPQN--------LKTLCSNGQLTKALIEMATL---GLEMRFEE 60
           SSL F   Q     F   P          ++ + SN     A+   A++   G       
Sbjct: 44  SSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFT 103

Query: 61  YDTLLNACVN-QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +  +L AC         G  +H+ +IKT +   V+++T L+  Y+K   L+DARK+FDE+
Sbjct: 104 FPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEI 163

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            E+NVVSWTA+I  Y +     EAL LF  +L     P+ FT   +L +C+       G+
Sbjct: 164 PEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGR 223

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            I   + +S    +++V +SL+DMYAK G + EAR VF+ + E+DVV  +A+I GYA  G
Sbjct: 224 WIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNG 283

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           + +EA+++F ++Q E +  +      V +A S L AL  G      +   E  S  VL  
Sbjct: 284 MPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGT 343

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LID Y+KCGS+  ++ VF  M  +  + +NA++ G +  G       +F  M +   ++
Sbjct: 344 ALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVG-MQ 402

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD  T++ +L GC+H G+ D G   F  +        P IEHYGC+VD+  RAG + EA 
Sbjct: 403 PDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFS-VTPTIEHYGCMVDLQARAGLLVEAQ 461

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I++MP E  + + G+LLG CR+H +  + E V ++L+E+EP N+G+YV+LSN+Y+++ 
Sbjct: 462 DLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASH 521

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RW++  ++R  + +K + K PG SW+E+D ++H F   D SHP+  ++  K++ L    +
Sbjct: 522 RWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLR 581

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           EAGY P    VL+DV+EE+KE  L  HSEKLA+ F LI T     IRV+KNLR+C DCH 
Sbjct: 582 EAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHE 641

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K VSKV GR++ +RD NRFHH  EG+CSC DYW
Sbjct: 642 AIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 182/355 (51%), Gaps = 4/355 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           ++L   ++ H  +++       YL   L+           A  +F +    N+  +  +I
Sbjct: 14  KSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLI 73

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGKQIHSLIIKSNF 190
                     +A++++  M +    P+ FTF  VL +C      F +G  +HSL+IK+ F
Sbjct: 74  RGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGF 133

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +  ++V + L+ +Y+K G + +AR VF+ +PE++VVS TAII GY + G   EA+ LFR 
Sbjct: 134 DWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRG 193

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           L   G+  +  T   +L A S +  L  G+ +  ++        V +  SL+DMY+KCGS
Sbjct: 194 LLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGS 253

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +RRVFD M E+ V+ W+A++ GY+ +GM +E +++F  M+ EN V+PD    + V S
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQREN-VRPDCYAMVGVFS 312

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            CS  G  + G      ++D  D F         ++D   + G V +A E  K M
Sbjct: 313 ACSRLGALELGNWA-RGLMD-GDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM 365


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 365/611 (59%), Gaps = 13/611 (2%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACV--NQRTLRGGQRVHAHMIKT 87
           L  LC N +  +A+     M   G+        ++L  CV    R L     +H + +K 
Sbjct: 142 LSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRAL--ALAMHLYAVKH 199

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
                +++   +I  Y K   L + RK+FD M  R++V+W ++IS + Q      A+ +F
Sbjct: 200 GLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMF 259

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAK 206
             M  S   P+  T  ++ ++ A       G+ +H  +++  ++   I  G++++DMYAK
Sbjct: 260 CGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAK 319

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYAS 265
             +I  A+ +F+ +P RD VS   +I+GY Q GL  EAI ++  +Q  EG+     T+ S
Sbjct: 320 LSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVS 379

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL A S L AL  G ++H+  ++  +   V +   +ID+Y+KCG L  +  +F+    R+
Sbjct: 380 VLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRS 439

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
              WNA++ G   HG G + + LF+ M++E  + PD VT++++L+ CSH G+ D+G   F
Sbjct: 440 TGPWNAVISGVGVHGHGAKALSLFSQMQQEG-ISPDHVTFVSLLAACSHAGLVDQGRNFF 498

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           + ++    G +P  +HY C+VDM GRAG++ +A +FI+NMP +P +AI G+LLGACR+H 
Sbjct: 499 N-MMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHG 557

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           NV++G+   Q L E++P+N G YV++SN+YA  G+W+ V  VR L++ + + K PG S I
Sbjct: 558 NVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 617

Query: 506 ELDQILHTFHASDRS--HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           E+ + ++ F++ ++   HP  EE+  ++  L  K +  GYVPD S VL DV+E++KE++L
Sbjct: 618 EVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQIL 677

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSE+LA+ FG+I TP   P+ + KNLR+C DCHN  K++SK+  R++ +RD NRFHH 
Sbjct: 678 NNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHF 737

Query: 624 VEGTCSCGDYW 634
            +G CSCGD+W
Sbjct: 738 KDGYCSCGDFW 748



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 186/344 (54%), Gaps = 5/344 (1%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           R   +    L+  Y +   + DA + FDEMR R+V +W AM+S   + A + EA+ LF R
Sbjct: 101 RGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M+      +  T ++VL  C       L   +H   +K   +  ++V ++++D+Y K G 
Sbjct: 161 MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGM 220

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + E R VF+ +  RD+V+  +IISG+ Q G    A+E+F  ++  G+  + +T  S+ +A
Sbjct: 221 LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASA 280

Query: 270 LSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           ++    +  G+ VH +++R  +++   ++  N+++DMY+K   +  ++R+FD+M  R  +
Sbjct: 281 IAQCGDICGGRSVHCYMVRRGWDVGD-IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAV 339

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWN ++ GY ++G+  E + +++ M++   +KP   T+++VL   SH G   +G  +   
Sbjct: 340 SWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM--H 397

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
            +  K G   ++    CV+D+  + G++ EA+   +  P   T 
Sbjct: 398 ALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTG 441



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGV 216
           + FTF  +L +  G        Q+H+  ++        +   +L+  Y + GR+ +A   
Sbjct: 70  DAFTFPPLLRAAQGP---GTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  RDV +  A++SG  +     EA+ LF ++ +EG+  + VT +SVL     L   
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
                +H + ++  +   + + N++ID+Y K G L   R+VFD MS R +++WN+++ G+
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            + G     VE+F  MR+   V PD +T L++ S  +  G    G +V   +V  + G++
Sbjct: 247 EQGGQVASAVEMFCGMRDSG-VSPDVLTLLSLASAIAQCGDICGGRSVHCYMV--RRGWD 303

Query: 397 -PEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +I     +VDM  +  ++  A     +MP
Sbjct: 304 VGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/585 (41%), Positives = 343/585 (58%), Gaps = 17/585 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP----------PVYLRTRLIVFYNKCECLSDA 112
            LL     Q  L  G  VHA+ I+ C  P           V L T L+  Y KC  L  A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT---EPNEFTFATVLTSC 169
           R++FD M  RN V+W+A+I  +   +   +A  LF  ML        P   + A+ L +C
Sbjct: 178 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRAC 235

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A      +G+Q+H+L+ KS   + +  G+SLL MYAKAG I +A  +F+ +  +D VS +
Sbjct: 236 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 295

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A++SGY Q G  EEA  +F+K+Q   +  +  T  S++ A S LAAL HG+  H  V+  
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S   + N+LIDMY+KCG +  SR+VF+ M  R ++SWN M+ GY  HG+G+E   LF
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M       PD VT++ +LS CSH G+   G   FH ++    G  P +EHY C+VD+L
Sbjct: 416 LEMNNLG-FPPDGVTFICLLSACSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLL 473

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            R G + EA EFI++MP      +  +LLGACRV+ N+D+G+ V + + E+ PE  GN+V
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+Y++AGR+++   VR + K +   K PG SWIE++  LH F   D+SHP   E+  
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           ++  + V  K+ GY PD S VL D++EE+KEK L+ HSEKLA+ +G++   E   I V K
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 653

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH   K +S V  R + +RD NRFHH   G CSCGD+W
Sbjct: 654 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 185/377 (49%), Gaps = 20/377 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC        G+ +H H I    +  +++ T L+  Y KC CL DA  +F  M  R++
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 76

Query: 125 VSWTAMISAYSQKA--HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           V+W AM++ Y+     H   A  L ++M      PN  T   +L   A       G  +H
Sbjct: 77  VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 136

Query: 183 SLII----------KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +  I          KS     + +G++LLDMYAK G +  AR VF+ +P R+ V+ +A+I
Sbjct: 137 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 196

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH---GKQVHSHVLRF 289
            G+       +A  LF+ +  +G+   +++  S+ +AL   A+L H   G+Q+H+ + + 
Sbjct: 197 GGFVLCSRMTQAFLLFKAMLAQGLC--FLSPTSIASALRACASLDHLRMGEQLHALLAKS 254

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + + +   NSL+ MY+K G +  +  +FD M+ +  +S++A++ GY ++G   E   +F
Sbjct: 255 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 314

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M+  N V+PD+ T ++++  CSH      G      ++    G   E      ++DM 
Sbjct: 315 KKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVI--IRGLASETSICNALIDMY 371

Query: 410 GRAGRVGEALEFIKNMP 426
            + GR+  + +    MP
Sbjct: 372 AKCGRIDLSRQVFNMMP 388



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 196/453 (43%), Gaps = 83/453 (18%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR    PN +TF   L +C+       G+ IH   I +  ++ ++V ++LLDMY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE--LFRKLQVEGMISNYVTYASVL 267
           + +A  +F  +P RD+V+  A+++GYA  G+   A+   L  ++Q+  +  N  T  ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 268 TALSGLAALGHGKQVHSHVLRF----------EIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
             L+   AL  G  VH++ +R           ++   V+L  +L+DMY+KCGSL Y+RRV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE---------------------- 355
           FD M  R  ++W+A++ G+       +   LF  M  +                      
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 356 -------------NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
                        + V  D     ++LS  +  G+ D+ +A+F E+   KD        Y
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVS-----Y 294

Query: 403 GCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACR-----VHYNVDIGEFVG 454
             +V    + GR  EA    K M     EP AA + SL+ AC       H     G  + 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 455 QRLM-EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
           + L  E    NA     L ++YA  GR +   +V  +M  + +      SW       +T
Sbjct: 355 RGLASETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRDIV-----SW-------NT 397

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
             A    H + +E +A    L ++    G+ PD
Sbjct: 398 MIAGYGIHGLGKEATA----LFLEMNNLGFPPD 426



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +A +   +M    +E       +L+ AC +   L+ G+  H  +I         +
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 363

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y KC  +  +R++F+ M  R++VSW  MI+ Y       EA  LF+ M     
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQI-----HSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            P+  TF  +L++C+ +     GK       H   +    E +I     ++D+ ++ G +
Sbjct: 424 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFL 479

Query: 211 HEARGVFECLPER-DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            EA    + +P R DV    A++     Y  + L ++   + ++L  EG   N+V  +++
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG-TGNFVLLSNI 538

Query: 267 LTA 269
            +A
Sbjct: 539 YSA 541


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 347/575 (60%), Gaps = 5/575 (0%)

Query: 63  TLLNA---CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           T+LNA   C ++  L   + +H + +K  +     L    +  Y KC  LS A+++F  +
Sbjct: 381 TILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGI 440

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R + + SW A+I  Y+Q +    +L+  ++M  S   P+ FT  ++L++C+      LGK
Sbjct: 441 RSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGK 500

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           ++H  II++  E  ++V  S+L +Y   G +   + +F+ + +  +VS   +I+G+ Q G
Sbjct: 501 EVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNG 560

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E A+ LFR++ + G+    ++  +V  A S L +L  G++ H++ L+  +     +  
Sbjct: 561 FPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIAC 620

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           S+IDMY+K G++T S +VF+ + E++  SWNAM++GY  HG  +E ++LF  M+   +  
Sbjct: 621 SIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGR-N 679

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD +T+L VL+ C+H G+   GL    ++     G +P ++HY CV+DMLGRAG++  AL
Sbjct: 680 PDDLTFLGVLTACNHSGLLHEGLRYLDQM-KSSFGLKPNLKHYACVIDMLGRAGQLDNAL 738

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
                M  EP   I  SLL  CR+H N+++GE V  +L  +EPE   NYV+LSNLYA  G
Sbjct: 739 RVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLG 798

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +W+DV +VR+ MKE ++ KD G SWIEL+  + +F   +R     EE+ +    L +K  
Sbjct: 799 KWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIW 858

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GY PD S V +D+ EE+K + L GHSEKLA+T+GLI T EG  +RV KNLRICVDCHN
Sbjct: 859 KMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHN 918

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            AK +SKV  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 919 AAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 191/389 (49%), Gaps = 35/389 (8%)

Query: 2   RRPKKQSRAFSSLTFTQQQLTVPSFPPNP--QNLKTLCSNGQLTKAL---------IEMA 50
           RR +K+S +F    +    ++  S   N   + +   C  G L K+           E +
Sbjct: 18  RRSRKES-SFPRADYNSNAISSNSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESS 76

Query: 51  TLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK--TCYRPPVYLRTRLIVFYNKCEC 108
           +    +  E    LL A   ++ +  G+++H H++   T  R    L TR+I  Y  C  
Sbjct: 77  SDVFLLVREALGLLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGS 135

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLT 167
             D+R  FD +R +N+  W A+IS+YS+     E L +FI+M+ ++   P+ FTF  V+ 
Sbjct: 136 PDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIK 195

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CAG     +G  +H L++K+     ++VG++L+  Y   G + +A  +F+ +PER++VS
Sbjct: 196 ACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVS 255

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             ++I  ++  G D               + +  T  +VL   +    +G GK VH   +
Sbjct: 256 WNSMIRVFSDNGDD------------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAV 303

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  +   +V+ N+L+DMYSK G +  S+ +F   + + V+SWN M+ G+S  G   ++  
Sbjct: 304 KLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG---DIHG 360

Query: 348 LFNLMRE----ENKVKPDSVTYLAVLSGC 372
            F+L+R+       VK D VT L  +  C
Sbjct: 361 TFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 163/315 (51%), Gaps = 15/315 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++ AC     +  G  VH  ++KT     +++   L+ FY     +SDA K+FD M 
Sbjct: 190 FPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMP 249

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN+VSW +MI  +S        +            P+  T  TVL  CA      +GK 
Sbjct: 250 ERNLVSWNSMIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIGVGKG 297

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K + +  + V ++L+DMY+K G I +++ +F+    ++VVS   ++ G++  G 
Sbjct: 298 VHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGD 357

Query: 241 DEEAIELFRKLQV--EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
                +L R++    E + ++ VT  + +      + L   K++H + L+ E     +L 
Sbjct: 358 IHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLA 417

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+ +  Y+KCGSL+Y++RVF  +  +T+ SWNA++ GY++    R  ++  +L  + + +
Sbjct: 418 NAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDA-HLQMKNSGL 476

Query: 359 KPDSVTYLAVLSGCS 373
            PD+ T  ++LS CS
Sbjct: 477 LPDNFTVCSLLSACS 491



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   +I MY+ CGS   SR  FD +  + +  WNA++  YS++ +  EV+E+F  M  +
Sbjct: 121 VLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISK 180

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             + PD+ T+  V+  C+  G+ D G+ +    +  K G   ++     +V   G  G V
Sbjct: 181 THLLPDNFTFPCVIKACA--GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFV 238

Query: 416 GEALEFIKNMP 426
            +AL+    MP
Sbjct: 239 SDALKLFDIMP 249


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 353/575 (61%), Gaps = 8/575 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC + R L   + VHA  ++      V + T ++  Y KC  +  AR +FD M  R
Sbjct: 124 SVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR 183

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQI 181
           N VSW AMI  Y+   ++ EA+ LF RM++   +  + +    L +C G  G+ +  +++
Sbjct: 184 NSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQAC-GELGYLDEVRRV 242

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV-VSCTAIISGYAQLGL 240
           H L+++    S++ V ++L+  YAK  R   A  VF  L  +   +S  A+I G+ Q   
Sbjct: 243 HELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNEC 302

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E+A  LF ++Q+E +  +  T  SV+ A++ ++     + +H + +R ++   V +  +
Sbjct: 303 PEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTA 362

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMYSKCG ++ +RR+FD+  +R VI+WNAM+ GY  HG G+  VELF  M+    + P
Sbjct: 363 LIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSL-P 421

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEAL 419
           +  T+L+VL+ CSH G+ D G   F  +   KD G EP +EHYG +VD+LGRAG++ EA 
Sbjct: 422 NETTFLSVLAACSHAGLVDEGQKYFASMK--KDYGLEPGMEHYGTMVDLLGRAGKLDEAW 479

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FIKNMP EP  ++ G++LGAC++H NV++ E   Q + E+ PE    +V+L+N+YA+A 
Sbjct: 480 SFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANAS 539

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            W+DV RVR  M++K + K PG S I+L   +HTF++   +H   +++ A++ +L  + K
Sbjct: 540 MWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIK 599

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GYVPD   + +DV+++ K ++L  HSEKLA+ +GLI T  G  I++ KNLR+C DCHN
Sbjct: 600 DMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHN 658

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +S + GR++ +RD  RFHH  +G CSCGDYW
Sbjct: 659 ATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 191/364 (52%), Gaps = 12/364 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LL  C  +  L  G+ VHA +            T L   Y KC   +DAR++FD M 
Sbjct: 19  FTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMP 78

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELG 178
            R+ V+W A+++ Y++      A+   +RM   +    P+  T  +VL +CA A      
Sbjct: 79  SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H+  +++  +  + V +++LD Y K G +  AR VF+C+P R+ VS  A+I GYA  
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH---GKQVHSHVLRFEIPSYV 295
           G   EA+ LF ++  EG+    VT ASVL AL     LG+    ++VH  ++R  + S V
Sbjct: 199 GNATEAMALFWRMVQEGV---DVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNV 255

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            + N+LI  Y+KC     + +VF+ + +++T ISWNAM++G++++    +   LF  M+ 
Sbjct: 256 SVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQL 315

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           EN V+PDS T ++V+   +   + D   A +      +   + ++     ++DM  + GR
Sbjct: 316 EN-VRPDSFTLVSVIPAVAD--ISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGR 372

Query: 415 VGEA 418
           V  A
Sbjct: 373 VSIA 376



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TF  +L  CA       G+ +H+ +      S     ++L +MY K  R  +AR VF+ +
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAALGH 278
           P RD V+  A+++GYA+ GL   A+E   ++Q E  G   + VT  SVL A +   AL  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            ++VH+  LR  +   V +  +++D Y KCG++  +R VFD M  R  +SWNAM+ GY+ 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           +G   E + LF  M +E  V     + LA L  C   G  D
Sbjct: 198 NGNATEAMALFWRMVQEG-VDVTDASVLAALQACGELGYLD 237


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/583 (39%), Positives = 344/583 (59%), Gaps = 15/583 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI--------VFYNKCECLSDARK 114
           TLLN+  N  TL    ++HA ++KT  +    + T+          + Y        +  
Sbjct: 22  TLLNSHCN--TLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHT 79

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR-MLRSDTEPNEFTFATVLTSCAGAF 173
                   +   +  +I AYSQ   S     LF R MLR    PN+FTF  VL  CAG  
Sbjct: 80  TSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIG 139

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR--IHEARGVFECLPERDVVSCTAI 231
              LGK +H  ++K  FE  ++V ++L+ MY   G      A  VF+  P+ D V+ +A+
Sbjct: 140 SLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAM 199

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+G+ +LG    A++LFR++QV G+  + +T  SVL+A + L AL  GK V S+V +  I
Sbjct: 200 IAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNI 259

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
           P  V L N+LIDM++KCG++  + ++F  M  RT++SW +++ G + HG G + V LF+ 
Sbjct: 260 PKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDE 319

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M E N + PD V ++ VLS CSH G+ D+G   F  + +      P++EHYGC+VD+L R
Sbjct: 320 MVE-NGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM-ERNFSIVPKVEHYGCMVDLLCR 377

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
            G V EA EF++ MPFEP   I  +++ AC     + +GE + + L++ EP +  NYV+L
Sbjct: 378 GGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLL 437

Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV 531
           SN+YA   +WE  T+VRE+M  + + K PG + IE++  ++ F A D+SH   +E+   V
Sbjct: 438 SNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMV 497

Query: 532 KQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
            ++  + K+AGYVP  S VL D+DEE KE  L  HSEKLA+ F L+ TP G  IR++KNL
Sbjct: 498 DEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNL 557

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+C DCH+  KF+SKVY R++ +RD+NRFHH   G CSC D+W
Sbjct: 558 RVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/586 (40%), Positives = 356/586 (60%), Gaps = 20/586 (3%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           + +LN C  +R L  G++VH  + K  +     +   +I  Y+KC  + +A ++F+ +  
Sbjct: 8   NKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPV 67

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RNV+SW AMI+ Y+ + +  EALNLF  M      P+ +T+++ L +C+ A     G QI
Sbjct: 68  RNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQI 127

Query: 182 HSLIIKSNFE--SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           H+ +I+  F   +   V  +L+D+Y K  R+ EAR VF+ + E+ V+S + +I GYAQ  
Sbjct: 128 HAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQED 187

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ- 298
             +EA++LFR+L+      +    +S++   +  A L  GKQ+H++ ++  +P Y +L+ 
Sbjct: 188 NLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIK--VP-YGLLEM 244

Query: 299 ---NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              NS++DMY KCG    +  +F  M ER V+SW  M+ GY KHG+G + VELFN M +E
Sbjct: 245 SVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEM-QE 303

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           N ++PDSVTYLAVLS CSH G+   G   F  I+      +P++EHY C+VD+LGR GR+
Sbjct: 304 NGIEPDSVTYLAVLSACSHSGLIKEGKKYF-SILCSNQKIKPKVEHYACMVDLLGRGGRL 362

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA   I+ MP +P   I  +LL  CR+H +V++G+ VG+ L+  E  N  NYV++SN+Y
Sbjct: 363 KEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMY 422

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A AG W++  ++RE +K K + K+ GRSW+E+D+ +H F+  D  HP+ EE+   +K++ 
Sbjct: 423 AHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEME 482

Query: 536 VKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP------IRVI 588
            + K E GYV  ++  L+DV+EE K + L  HSEKLA+  GL+    G        IR+ 
Sbjct: 483 KRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAI--GLVLVRRGLKLKGERVIRIF 540

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH F K +SKV      +RD NRFH    G CSCGDYW
Sbjct: 541 KNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 353/573 (61%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  N   +R  + VH   ++  +   V++ T L+  Y+K  C+  AR++F+ M ER
Sbjct: 127 SVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER 186

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSW A++S YS    S EA++LF  M R     + +T  +++ +       ++G  IH
Sbjct: 187 NVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II++ +E+  ++ ++L+D+Y     + +A  VF  +  +DV + T +++G++     +
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWD 306

Query: 243 EAIELFRK-LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            AI+ F K L ++ +  + +    +L++ S   AL  G++VH+  ++    + + + +++
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAV 366

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           IDMY+ CG+L  ++R F  M E+ V+ WNAM+ G   +G G + ++LF L  + + + PD
Sbjct: 367 IDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF-LQMKGSGLDPD 425

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             T+++VL  CSH GM   GL +F+ +V       P ++HY CV+D+LGRAG++  A  F
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDI-PNLQHYACVIDILGRAGQLDAAYSF 484

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I NMPF+P   +  +LLGACR+H N+ +G  + Q++ E+EP +AG YV+LSN+YA AG W
Sbjct: 485 INNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNW 544

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           E V   R  ++ K + KDPG S IE++Q ++TF A ++ HP   ++   +K L +K K+A
Sbjct: 545 EGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKA 604

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVP+ + +L DV ++ K+ +L  HSEK+A+ FGL+ T  G  IR+ KNLR C DCH+ +
Sbjct: 605 GYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSAS 664

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KFVSKV+GR + ++D NRFH   +G CSC DYW
Sbjct: 665 KFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 205/408 (50%), Gaps = 6/408 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L+  Q++HA +I +      +L   L+  Y  C  L+DA+++F     +NVVSWT +I
Sbjct: 35  KDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILI 94

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           S  ++     EA+++F  M   + +PN  T ++VL + A      + K +H   ++  FE
Sbjct: 95  SGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFE 154

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            +++V ++L+DMY+K G +  AR +FE + ER+VVS  AI+SGY+  G  EEAI+LF  +
Sbjct: 155 GNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLM 214

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           + +G++ ++ T  S++ A   +  L  G  +H  ++R    +   ++ +L+D+Y     +
Sbjct: 215 RRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCV 274

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + RVF  M  + V +W  ML G+S        ++ FN M     +K DS+  + +LS 
Sbjct: 275 DDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSS 334

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G   +G  V    +  K  F   I     V+DM    G + +A  F   M  +   
Sbjct: 335 CSHSGALQQGRRV--HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 432 AILGSLLGACRVHYNVD-IGEFVGQRLMEIEPENAGNYVILSNLYASA 478
                + G     Y  D I  F+  +   ++P+ +     +S LYA +
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDES---TFVSVLYACS 437



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 176/327 (53%), Gaps = 18/327 (5%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL + F    +L+ A ++   L+ G  +H  +I+T Y    +++T L+  Y    C+ DA
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAG 171
            ++F EM  ++V +WT M++ +S   H   A+  F +ML   + + +      +L+SC+ 
Sbjct: 278 HRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +   + G+++H+L IK+ F ++I+VGS+++DMYA  G + +A+  F  + E+DVV   A+
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--F 289
           I+G    G   +AI+LF +++  G+  +  T+ SVL A S    +  G Q+  H+++   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 290 EIPSYVVLQN--SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-HG---MGR 343
           +IP+   LQ+   +ID+  + G L  +    +NM  +      + L+G  + HG   +G 
Sbjct: 458 DIPN---LQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLS 370
           E+ +      +  +++P+   Y  +LS
Sbjct: 515 EISQ------KIFEMEPNDAGYYVLLS 535


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 338/528 (64%), Gaps = 3/528 (0%)

Query: 109 LSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
           +S A K+F ++ +  NV  W  +I  Y++  +S  A +L+  M  S   EP+  T+  ++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +        LG+ IHS++I+S F S IYV +SLL +YA  G +  A  VF+ +PE+D+V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +  ++I+G+A+ G  EEA+ L+ ++  +G+  +  T  S+L+A + + AL  GK+VH ++
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  +   +   N L+D+Y++CG +  ++ +FD M ++  +SW +++VG + +G G+E +
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           ELF  M     + P  +T++ +L  CSH GM   G   F  + + +   EP IEH+GC+V
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-EYKIEPRIEHFGCMV 367

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+L RAG+V +A E+IK+MP +P   I  +LLGAC VH + D+ EF   +++++EP ++G
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
           +YV+LSN+YAS  RW DV ++R+ M    V K PG S +E+   +H F   D+SHP  + 
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+K+++ + +  GYVP +S V  DV+EE+KE  ++ HSEK+A+ F LI TPE +PI 
Sbjct: 488 IYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPIT 547

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V+KNLR+C DCH   K VSKVY R++ +RD++RFHH   G+CSC DYW
Sbjct: 548 VVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 161/297 (54%), Gaps = 4/297 (1%)

Query: 48  EMATLGL-EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           EM   GL E     Y  L+ A      +R G+ +H+ +I++ +   +Y++  L+  Y  C
Sbjct: 110 EMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC 169

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             ++ A K+FD+M E+++V+W ++I+ +++     EAL L+  M     +P+ FT  ++L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLL 229

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++CA      LGK++H  +IK     +++  + LLD+YA+ GR+ EA+ +F+ + +++ V
Sbjct: 230 SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           S T++I G A  G  +EAIELF+ ++  EG++   +T+  +L A S    +  G +    
Sbjct: 290 SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRR 349

Query: 286 VL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           +   ++I   +     ++D+ ++ G +  +     +M  +  V+ W  +L   + HG
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 350/632 (55%), Gaps = 76/632 (12%)

Query: 47  IEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           +E   L  EM++E        + ++L  C     L  G+++HAH IKT +    ++ T L
Sbjct: 120 VEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGL 179

Query: 100 IVFYNKCECLSDARKMFD-EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +  Y KC+C+ +A  +F+    +RN V WTAM++ YSQ     +A+  F  M     E N
Sbjct: 180 VDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECN 239

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           +FTF ++LT+C        G Q+H  I++S F ++++VGS+L+DMY+K G +  AR + E
Sbjct: 240 QFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLE 299

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +   D VS  ++I G  + GL EEA+ LFR + +  M  +  TY S++           
Sbjct: 300 TMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLV----------- 348

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
                               N+L+DMY+K G   Y+  VF+ M+++ VISW +++ G   
Sbjct: 349 -------------------NNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVH 389

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH---------GGMED---------- 379
           +G   E + LF  MR    + PD +   AVLS   +         G +ED          
Sbjct: 390 NGSYEEALRLFCEMRIMG-IHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEI 448

Query: 380 -----------------RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
                            RG   F  + +   G +P  EHY C++D+LGR+G++ EA E +
Sbjct: 449 QDVITWTALIVGYAQNGRGRDYFQSMEEVY-GIKPGPEHYACMIDLLGRSGKLMEAKELL 507

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             M  +P A +  +LL ACRVH NV++GE     L E+EP+NA  YV+LSNLY++AG+WE
Sbjct: 508 NQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWE 567

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +  + R LMK + V+K+PG SWIE+   +H F + DRSHP   E+ +KV ++ +  KEAG
Sbjct: 568 EAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAG 627

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPDM+  L+D+DEE KE  L  HSEKLA+ FGL+  P GAPIR+ KNLRIC DCH   K
Sbjct: 628 YVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMK 687

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +VS V+ R V LRD N FHH  EG CSC DYW
Sbjct: 688 YVSGVFHRHVILRDSNCFHHFREGACSCSDYW 719



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 191/341 (56%), Gaps = 16/341 (4%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L++ARK+F E   R+ ++W+++IS Y +     EAL LF  M      PN+FT+ +VL  
Sbjct: 88  LNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRV 147

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVS 227
           C+     E GKQIH+  IK+ F+S+ +V + L+DMYAK   I EA  +FE  P+ R+ V 
Sbjct: 148 CSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVL 207

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA+++GY+Q G   +AIE FR ++ EG+  N  T+ S+LTA   ++A G G QVH  ++
Sbjct: 208 WTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIV 267

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R    + V + ++L+DMYSKCG L+ +RR+ + M     +SWN+M+VG  + G+G E + 
Sbjct: 268 RSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALS 327

Query: 348 LFNLMREENKVKPDSVTYLAVLSGC-----SHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           LF +M   + +K D  TY ++++       +  G  D    VF ++ D KD         
Sbjct: 328 LFRIMHLRH-MKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTD-KDVISWTSLVT 385

Query: 403 GCVVDMLGRAGRVGEALEF---IKNMPFEPTAAILGSLLGA 440
           GCV       G   EAL     ++ M   P   ++ ++L A
Sbjct: 386 GCV-----HNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 421



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 18/318 (5%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++++  YA +GR++EAR +F   P R  ++ +++ISGY + G D EA+ELF ++Q EG  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N  T+ SVL   S    L  GKQ+H+H ++ +  S   +   L+DMY+KC  +  +  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 318 FD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           F+    +R  + W AM+ GYS++G G + +E F  MR E  ++ +  T+ ++L+ C    
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEG-IECNQFTFPSILTACGSIS 254

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
               G  V   IV  + GF   +     +VDM  + G +  A   ++ M  +   +    
Sbjct: 255 ACGFGAQVHGCIV--RSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSM 312

Query: 437 LLGACRVHYN---VDIGEFVGQRLMEIE----PENAGNYVILSNLYASAGRWEDVTRVRE 489
           ++G  R       + +   +  R M+I+    P    N ++  ++YA  G ++    V E
Sbjct: 313 IVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALV--DMYAKRGYFDYAFDVFE 370

Query: 490 LMKEKAVTKDPGRSWIEL 507
            M +K V      SW  L
Sbjct: 371 KMTDKDVI-----SWTSL 383



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N ++   SKCG +  +R++FD M +R   SWN M+  Y+  G   E  +LF     E  +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLF----YETPI 100

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           +   +T+ +++SG    G +   L +F E+
Sbjct: 101 R-SCITWSSLISGYCRYGCDVEALELFWEM 129


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 353/576 (61%), Gaps = 9/576 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSD-ARKMFDEM 119
           +LL+ C +   L+   ++ A+ IKT  +  + + T+LI F   N      D A  +FD++
Sbjct: 34  SLLSKCTSLNELK---QIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQI 90

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
            +++++ +  M   Y++    + A +LF  +L S   P+++TF+++L +CA +     G 
Sbjct: 91  LDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGM 150

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H   +K     +IY+  +L++MYA+   ++ ARGVF+ + +  +VS  AII+GYA+  
Sbjct: 151 GLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSS 210

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ LFR+LQ   +    VT  SV+ + + L AL  GK +H +V +     YV +  
Sbjct: 211 QPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNT 270

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDM++KCGSLT +  +F+ M  R   +W+AM+V ++ HG G + + +F  M+ E  V+
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREG-VR 329

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD +T+L +L  CSH G+ ++G   F+ +     G  P I+HYGC+VD+LGRAG + EA 
Sbjct: 330 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKTY-GITPGIKHYGCMVDLLGRAGHLDEAY 388

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            F+  +  + T  +  +LL AC  H NV++ + V +R+ E++  + G+YVILSNLYA  G
Sbjct: 389 NFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVG 448

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWEDV  +R+LMK++ V K PG S +E++ ++H F + D  H +  EL   + +L  + K
Sbjct: 449 RWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIK 508

Query: 540 EAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
             GYVPD S V + D++EE KE VL  HSEKLA+ FGL+ TP G  IRV KNLRIC DCH
Sbjct: 509 LVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCH 568

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           N AK +S ++GRK+ +RD  RFH   +G CSCGD+W
Sbjct: 569 NAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 7/293 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL AC + + LR G  +H   +K      +Y+   LI  Y +C  ++ AR +FDEM 
Sbjct: 133 FSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEME 192

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +  +VS+ A+I+ Y++ +   EAL+LF  +  S+ EP + T  +V+ SCA     +LGK 
Sbjct: 193 QPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKW 252

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  + K  F+ ++ V ++L+DM+AK G + +A  +FE +  RD  + +A+I  +A  G 
Sbjct: 253 IHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGD 312

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             +AI +F +++ EG+  + +T+  +L A S  GL   G G   +S    + I   +   
Sbjct: 313 GLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRG-YFYSMSKTYGITPGIKHY 371

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE 347
             ++D+  + G L  +    D +  + T I W  +L   S HG   M + V+E
Sbjct: 372 GCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIE 424


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/626 (38%), Positives = 364/626 (58%), Gaps = 65/626 (10%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM------FDE 118
           + AC + R L+   +VHA ++KT       + T ++    +    SD R +      FD+
Sbjct: 22  IKACKSMRELK---QVHAFLVKTGQTHDNAIATEIL----RLSATSDFRDIGYALSVFDQ 74

Query: 119 MRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFE 176
           + ERN  +W  +I A ++ +    +AL +F +ML   T EPN+FTF +VL +CA      
Sbjct: 75  LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMY-------------------------------- 204
            GKQ+H L++K       +V ++LL MY                                
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194

Query: 205 ---------------AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF- 248
                          A+ G +  AR +F+ + +R VVS   +ISGYAQ G  +EAIE+F 
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFH 254

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           R +Q+  ++ N VT  SVL A+S L  L  GK VH +  + +I    VL ++L+DMY+KC
Sbjct: 255 RMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKC 314

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           GS+  + +VF+ + +  VI+WNA++ G + HG   ++    + M E+  + P  VTY+A+
Sbjct: 315 GSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRM-EKCGISPSDVTYIAI 373

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           LS CSH G+ D G + F+++V+   G +P+IEHYGC+VD+LGRAG + EA E I NMP +
Sbjct: 374 LSACSHAGLVDEGRSFFNDMVNSV-GLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMK 432

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           P   I  +LLGA ++H N+ IG    + LM++ P ++G YV LSN+YAS+G W+ V  VR
Sbjct: 433 PDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVR 492

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
            +MK+  + KDPG SWIE+D ++H F   D SH   +++ + ++++S K    G++PD +
Sbjct: 493 LMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTT 552

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
            VL  +DE+ KE VL  HSEK+A+ FGLI TP   P+ ++KNLRIC DCH+  K +SK+Y
Sbjct: 553 QVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMY 612

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
            RK+ +RD+ RFHH   G+CSC DYW
Sbjct: 613 ERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A      L  G+ VH +  K   R    L + L+  Y KC  +  A ++F+ + + 
Sbjct: 271 SVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQN 330

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV++W A+I   +    + +  N   RM +    P++ T+  +L++C+ A   + G+   
Sbjct: 331 NVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFF 390

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           + ++ S   +  I     ++D+  +AG + EA  +   +P +
Sbjct: 391 NDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMK 432


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 351/565 (62%), Gaps = 10/565 (1%)

Query: 77  GQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G+++H   I++   P   +  + L+  YN C    DARK FDE+   N V  TAM S Y 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG--KQIHSLIIKSNFESH 193
           +    + +L LF +++ S +       A ++   A A   + G    +H+L++K+  +  
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 194 IYVGSSLLDMYAKAGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK- 250
             V +++LD YAK GR  +  AR VF+ + E+DVVS  ++I+ YAQ G+  +A+ L+RK 
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 251 LQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           L V G I  N VT +++L A +    +  GK +H+ V+R  +   V +  S++DMYSKCG
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +R+ F  + E+ ++SW+AM+ GY  HG G+E +++FN M    +  P+ +T+++VL
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQ-NPNYITFISVL 405

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+ D+G   ++  +  + G EP +EHYGC+VD+LGRAG + EA   IK M  +P
Sbjct: 406 AACSHAGLLDKG-RYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKP 464

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            AAI G+LL ACR+H NV++ E   +RL E++  N G YV+LSN+YA AG W+DV R+R 
Sbjct: 465 DAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRV 524

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+K + + K PG S +EL    H F+  D+SHP  +E+ + + +L  K +EAGYVP+   
Sbjct: 525 LVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGS 584

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+D+DEE+K   L  HSEKLA+ F L+ +  G+ I VIKNLR+C DCH   K ++K+  
Sbjct: 585 VLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQ 644

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++ +RD  RFHH  +G+CSCGDYW
Sbjct: 645 REIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +  T++ G+ +H  +++      VY+ T ++  Y+KC  +  ARK F +++E+
Sbjct: 302 AILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEK 361

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N++SW+AMI+ Y    H  EAL++F  M RS   PN  TF +VL +C+ A   + G+  +
Sbjct: 362 NILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWY 421

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           + + K    E  +     ++D+  +AG + EA G+ +
Sbjct: 422 NAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIK 458


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/604 (38%), Positives = 359/604 (59%), Gaps = 20/604 (3%)

Query: 39  NGQLTKALIEMATLGLEMRFE----EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
            G+  +  +E+    LE  FE       ++++AC    ++R G ++H+  ++        
Sbjct: 231 QGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDAC 290

Query: 95  LRTRLIVFYNKC---ECLSDARKMFDEMRERNVVSWTAMISAYSQKA-HSFEALNLFIRM 150
           +   L+  Y K    + +  A K+F+ M + +V+SWTA+IS Y Q      + + LF  M
Sbjct: 291 VSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEM 350

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           L    +PN  T++++L SCA     + G+Q+H+ +IKSN  S   VG++L+ MYA++G +
Sbjct: 351 LNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM 410

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EAR VF  L ER ++ C   I+      LD       R ++++  IS+  T+AS+++A 
Sbjct: 411 EEARRVFNQLYERSMIPC---ITEGRDFPLDH------RIVRMDVGISSS-TFASLISAA 460

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + +  L  G+Q+H+  L+    S   + NSL+ MYS+CG L  + R F+ + +R VISW 
Sbjct: 461 ASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +M+ G +KHG     + LF+ M     VKP+ VTY+AVLS CSH G+   G   F  +  
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTG-VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQR 579

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              G  P +EHY C+VD+L R+G V EALEFI  MP +  A +  +LLGACR H N+++G
Sbjct: 580 -DHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVG 638

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E   + ++E+EP +   YV+LSNLYA AG W++V R+R  M++  + K+ G SW+E++  
Sbjct: 639 EITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENT 698

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
            H F A D SHP  +++  K+  L  + K  GYVPD S VL+D+ +E KE+ LL HSEK+
Sbjct: 699 THEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKI 758

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI T    PIR+ KNLR+C DCH+  K++SK   R++ LRD NRFH + +G CSC
Sbjct: 759 AVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSC 818

Query: 631 GDYW 634
           G+YW
Sbjct: 819 GEYW 822



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 170/314 (54%), Gaps = 17/314 (5%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ ARK+FD + E+ VV WT +IS Y Q   + EA+ LF+  L    EP+ +T ++++++
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISA 263

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG---RIHEARGVFECLPERDV 225
           C       LG Q+HSL ++    S   V   L+DMYAK+     +  A  VFE +P+ DV
Sbjct: 264 CTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDV 323

Query: 226 VSCTAIISGYAQLGLDEEAI-ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +S TA+ISGY Q G+ E  +  LF ++  E +  N++TY+S+L + + ++    G+QVH+
Sbjct: 324 ISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHA 383

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           HV++    S   + N+L+ MY++ G +  +RRVF+ + ER++I              GR+
Sbjct: 384 HVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCIT---------EGRD 434

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
                 ++R +  V   S T+ +++S  +  GM  +G  +    +  K GF  +      
Sbjct: 435 FPLDHRIVRMD--VGISSSTFASLISAAASVGMLTKGQQL--HAMSLKAGFGSDRFVSNS 490

Query: 405 VVDMLGRAGRVGEA 418
           +V M  R G + +A
Sbjct: 491 LVSMYSRCGYLEDA 504



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 21/330 (6%)

Query: 74  LRGGQRVHAHMIK-TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMI 131
           LR G+ +H  +++         +   L+  Y++C  ++ AR +FD MR  R++VSWTAM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL--------GKQIHS 183
           S  ++      +L L   ML S   PN +T      +C   F  EL           +H 
Sbjct: 124 SCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC---FPHELYCLVGGVVLGLVHK 180

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + +   + + + VGS+L+DM A+ G +  AR VF+ L E+ VV  T +IS Y Q    EE
Sbjct: 181 MGL---WGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE 237

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ELF     +G   +  T +S+++A + L ++  G Q+HS  LR  + S   +   L+D
Sbjct: 238 AVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVD 297

Query: 304 MYSKCG---SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG-REVVELFNLMREENKVK 359
           MY+K     ++ Y+ +VF+ M +  VISW A++ GY + G+   +V+ LF  M  E+ +K
Sbjct: 298 MYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNES-IK 356

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           P+ +TY ++L  C+     D G  V   ++
Sbjct: 357 PNHITYSSILKSCASISDHDSGRQVHAHVI 386


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 366/630 (58%), Gaps = 13/630 (2%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
           + +++   +L  P  P  P+ L  +      +  +  +  +    R      LL  C   
Sbjct: 7   TGVSWKWSKLKGPMMPKGPRKLSVISEAKPESSKVENVVHMD---RVSNLHYLLQLCAKT 63

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
            +  GG+  HA +I+      +   T LI  Y+KC  +   RK  DEM  ++++     I
Sbjct: 64  GSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRI 123

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            A +Q A   +AL L IRM R  T  NEFT ++VL +CA         Q+H+  IK+  +
Sbjct: 124 GALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAID 183

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S+ +V ++LL +YAK   I +A  +FE +PE++ V+ +++++GY Q G  +EA+ LF   
Sbjct: 184 SNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNA 243

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           Q+ G   +    +S ++A +GLA L  GKQVH+   +    S + + +SLIDMY+KCG +
Sbjct: 244 QLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCI 303

Query: 312 TYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
             +  VF+   E R+++ WNAM+ G+++H + +E + LF  M++     PD VTY++VL+
Sbjct: 304 REAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFF-PDDVTYVSVLN 362

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+ + G   F  +V  +    P + HY C++D+LGRAG V +A + I  M F  T
Sbjct: 363 ACSHMGLHEEGQKYFDLMVR-QHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSFNAT 421

Query: 431 AAILGSLLG-------ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +++ GS+ G       +CR++ N++  E   + L E+EP NAGN+++L+N+YA+  + ++
Sbjct: 422 SSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAANKKSDE 481

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V R R+L++E  V K+ G SWIE+   +H+F   +R+HP  ++  AK+  L V+ K+  Y
Sbjct: 482 VARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLVVELKKLNY 541

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
             D +  L+DV+E +K  +L  HSEKLA+TFGL+  P   PIR+IKNLRIC DCH F K 
Sbjct: 542 KVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRICGDCHTFMKL 601

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           VSK   R++ +RD NRFHH  +G CSCG++
Sbjct: 602 VSKFASREIIVRDTNRFHHFKDGLCSCGEF 631


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/585 (41%), Positives = 343/585 (58%), Gaps = 17/585 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPP----------VYLRTRLIVFYNKCECLSDA 112
            LL     Q  L  G  VHA+ I+ C  P           V L T L+  Y KC  L  A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT---EPNEFTFATVLTSC 169
           R++FD M  RN V+W+A+I  +   +   +A  LF  ML        P   + A+ L +C
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRAC 350

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A      +G+Q+H+L+ KS   + +  G+SLL MYAKAG I +A  +F+ +  +D VS +
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A++SGY Q G  EEA  +F+K+Q   +  +  T  S++ A S LAAL HG+  H  V+  
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 470

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S   + N+LIDMY+KCG +  SR+VF+ M  R ++SWN M+ GY  HG+G+E   LF
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M       PD VT++ +LS CSH G+   G   FH ++    G  P +EHY C+VD+L
Sbjct: 531 LEMNNLG-FPPDGVTFICLLSACSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLL 588

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            R G + EA EFI++MP      +  +LLGACRV+ N+D+G+ V + + E+ PE  GN+V
Sbjct: 589 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+Y++AGR+++   VR + K +   K PG SWIE++  LH F   D+SHP   E+  
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 708

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           ++  + V  K+ GY PD S VL D++EE+KEK L+ HSEKLA+ +G++   E   I V K
Sbjct: 709 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 768

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH   K +S V  R + +RD NRFHH   G CSCGD+W
Sbjct: 769 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 185/377 (49%), Gaps = 20/377 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC        G+ +H H I    +  +++ T L+  Y KC CL DA  +F  M  R++
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 125 VSWTAMISAYSQKA--HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           V+W AM++ Y+     H   A  L ++M      PN  T   +L   A       G  +H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 183 SLII----------KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +  I          KS     + +G++LLDMYAK G +  AR VF+ +P R+ V+ +A+I
Sbjct: 252 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH---GKQVHSHVLRF 289
            G+       +A  LF+ +  +G+   +++  S+ +AL   A+L H   G+Q+H+ + + 
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLC--FLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + + +   NSL+ MY+K G +  +  +FD M+ +  +S++A++ GY ++G   E   +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M+  N V+PD+ T ++++  CSH      G      ++    G   E      ++DM 
Sbjct: 430 KKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVI--IRGLASETSICNALIDMY 486

Query: 410 GRAGRVGEALEFIKNMP 426
            + GR+  + +    MP
Sbjct: 487 AKCGRIDLSRQVFNMMP 503



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 221/496 (44%), Gaps = 85/496 (17%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA--LNLFIRMLRSDTEPNEFTFATVL 166
           LS A  +FD++   +V ++  +I AYS  + +  A  L+L+ RMLR    PN +TF   L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C+       G+ IH   I +  ++ ++V ++LLDMY K   + +A  +F  +P RD+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 227 SCTAIISGYAQLGLDEEAIE--LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +  A+++GYA  G+   A+   L  ++Q+  +  N  T  ++L  L+   AL  G  VH+
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252

Query: 285 HVLRF----------EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           + +R           ++   V+L  +L+DMY+KCGSL Y+RRVFD M  R  ++W+A++ 
Sbjct: 253 YCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312

Query: 335 GYSKHGMGREVVELFNLMREE-----------------------------------NKVK 359
           G+       +   LF  M  +                                   + V 
Sbjct: 313 GFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVH 372

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D     ++LS  +  G+ D+ +A+F E+   KD        Y  +V    + GR  EA 
Sbjct: 373 ADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVS-----YSALVSGYVQNGRAEEAF 426

Query: 420 EFIKNMP---FEPTAAILGSLLGACR-----VHYNVDIGEFVGQRLM-EIEPENAGNYVI 470
              K M     EP AA + SL+ AC       H     G  + + L  E    NA     
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA----- 481

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           L ++YA  GR +   +V  +M  + +      SW       +T  A    H + +E +A 
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSRDIV-----SW-------NTMIAGYGIHGLGKEATA- 528

Query: 531 VKQLSVKFKEAGYVPD 546
              L ++    G+ PD
Sbjct: 529 ---LFLEMNNLGFPPD 541



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +A +   +M    +E       +L+ AC +   L+ G+  H  +I         +
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y KC  +  +R++F+ M  R++VSW  MI+ Y       EA  LF+ M     
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQI-----HSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            P+  TF  +L++C+ +     GK       H   +    E +I     ++D+ ++ G +
Sbjct: 539 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFL 594

Query: 211 HEARGVFECLPER-DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            EA    + +P R DV    A++     Y  + L ++   + ++L  EG   N+V  +++
Sbjct: 595 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG-TGNFVLLSNI 653

Query: 267 LTA 269
            +A
Sbjct: 654 YSA 656


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 345/589 (58%), Gaps = 35/589 (5%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +++HAH++KT         +R+          S A+ +F  +    V  W   + ++++ 
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
               +A++LF R+   D  P+ +T + VL +C+       GK +H  + K   +S++++ 
Sbjct: 92  DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVV------------------------------- 226
           + ++ +YA  G I  AR VF+ +P+RDV+                               
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S T++I GYAQ G  +EAI+LF +++  G++ N VT  +VL A + +  L  G+++H   
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
            R      + + N+LIDMY KCG L  + R+FDNM ERTV+SW+AM+ G + HG   + +
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCV 405
            LFN M     VKP++VT++ +L  CSH GM ++G   F  +   +D G  P IEHYGC+
Sbjct: 332 ALFNKMINTG-VKPNAVTFIGILHACSHMGMVEKGRKYFASMT--RDYGIVPRIEHYGCM 388

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+  RAG + EA EFI NMP  P   + G+LLG C+VH N+ + E   + L +++P N 
Sbjct: 389 VDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLND 448

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           G YV+LSN+YA AGRWEDV RVR+LM+++ V K PG S I ++ +++ F A D +HP  E
Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTE 508

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           E+    ++L  + K  GYVP+ S VL D++E+QKEK L  HSEKLA+ FGLI T  G  I
Sbjct: 509 EIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVI 568

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++KNLR+C DCH   K +S V  R++ +RD+NRFH    G+CSCGDYW
Sbjct: 569 RIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 171/362 (47%), Gaps = 45/362 (12%)

Query: 51  TLGLEMRFEEYDT---------LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101
            + L  R  E+D          +L AC     +R G+ VH ++ K   +  ++L+  ++ 
Sbjct: 97  AISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVH 156

Query: 102 FYNKCECLSDARKMFD-------------------------------EMRERNVVSWTAM 130
            Y  C  +  ARK+FD                               EM ERNV SWT+M
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I  Y+Q   S EA++LF+ M  +   PNE T   VL +CA      LG++IH    +S +
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           E +I V ++L+DMY K G + +A  +F+ + ER VVS +A+I+G A  G  E+A+ LF K
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCG 309
           +   G+  N VT+  +L A S +  +  G++  + + R + I   +     ++D++S+ G
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396

Query: 310 SLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            L  +     NM      + W A+L G   H   + +       R  +K+ P +  Y  V
Sbjct: 397 LLQEAHEFIMNMPIAPNGVVWGALLGGCKVH---KNIKLAEEATRHLSKLDPLNDGYYVV 453

Query: 369 LS 370
           LS
Sbjct: 454 LS 455



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 5/212 (2%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM   GL         +L AC +   L  G+R+H    ++ Y   + +   LI  Y K
Sbjct: 233 FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C CL DA ++FD M ER VVSW+AMI+  +    + +AL LF +M+ +  +PN  TF  +
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 166 LTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ER 223
           L +C+     E G++  + + +       I     ++D++++AG + EA      +P   
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 224 DVVSCTAIISG---YAQLGLDEEAIELFRKLQ 252
           + V   A++ G   +  + L EEA     KL 
Sbjct: 413 NGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 337/554 (60%), Gaps = 22/554 (3%)

Query: 99  LIVFYNKCECLSDARKMFDEMRER----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           ++  Y++     DA ++F++M+E     +VV+W+A IS Y+Q+   +EAL +  +ML S 
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-------SHIYVGSSLLDMYAKA 207
            +PNE T  +VL+ CA       GK+IH   IK   +           V + L+DMYAK 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420

Query: 208 GRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVTY 263
            ++  AR +F+ L   ERDVV+ T +I GY+Q G   +A+EL  ++  E   +  N  T 
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFE---IPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +  L A + LAAL  GKQ+H++ LR +   +P +V   N LIDMY+KCGS++ +R VFDN
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFV--SNCLIDMYAKCGSISDARLVFDN 538

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  +  ++W +++ GY  HG G E + +F+ MR     K D VT L VL  CSH GM D+
Sbjct: 539 MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSGMIDQ 597

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G+  F+ +     G  P  EHY C+VD+LGRAGR+  AL  I+ MP EP   +  + L  
Sbjct: 598 GMEYFNRM-KTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR+H  V++GE+  +++ E+   + G+Y +LSNLYA+AGRW+DVTR+R LM+ K V K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G SW+E  +   TF   D++HP  +E+   +     + K+ GYVP+    L+DVD+E+K+
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKD 776

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
            +L  HSEKLAL +G++ TP+GA IR+ KNLR+C DCH    ++S++    + LRD +RF
Sbjct: 777 DLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRF 836

Query: 621 HHIVEGTCSCGDYW 634
           HH   G+CSC  YW
Sbjct: 837 HHFKNGSCSCKGYW 850



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 219/456 (48%), Gaps = 57/456 (12%)

Query: 26  FPPNPQN-------LKTLCSNGQLTKALIE---MATLGLEMRFEEYDTLLNACVNQRTLR 75
           FPP+          +++   NG   K L     M +L        +  +  AC    ++R
Sbjct: 85  FPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVR 144

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G+  HA  + T +   V++   L+  Y++C  LSDARK+FDEM   +VVSW ++I +Y+
Sbjct: 145 CGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYA 204

Query: 136 QKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +      AL +F RM       P+  T   VL  CA      LGKQ+H   + S    ++
Sbjct: 205 KLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNM 264

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG+ L+DMYAK G + EA  VF  +  +DVVS  A+++GY+Q+G  E+A+ LF K+Q E
Sbjct: 265 FVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324

Query: 255 -----------------------------------GMISNYVTYASVLTALSGLAALGHG 279
                                              G+  N VT  SVL+  + + AL HG
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 280 KQVHSHVLRFEIP-------SYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWN 330
           K++H + +++ I           ++ N LIDMY+KC  +  +R +FD++S  ER V++W 
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444

Query: 331 AMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            M+ GYS+HG   + +EL + M EE+ + +P++ T    L  C+       G  +    +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYAL 504

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             +    P      C++DM  + G + +A     NM
Sbjct: 505 RNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNM 539



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 163/307 (53%), Gaps = 6/307 (1%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           L + LI  Y    CLS A  +       +  V  W ++I +Y     + + L LF  M  
Sbjct: 61  LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHS 120

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
               P+ +TF  V  +C        G+  H+L + + F S+++VG++L+ MY++   + +
Sbjct: 121 LSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSD 180

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE-GMISNYVTYASVLTALS 271
           AR VF+ +   DVVS  +II  YA+LG  + A+E+F ++  E G   + +T  +VL   +
Sbjct: 181 ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCA 240

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L     GKQ+H   +  E+   + + N L+DMY+KCG +  +  VF NMS + V+SWNA
Sbjct: 241 SLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNA 300

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ GYS+ G   + V LF  M+EE K+K D VT+ A +SG +  G+    L V  +++  
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEE-KIKMDVVTWSAAISGYAQRGLGYEALGVCRQML-- 357

Query: 392 KDGFEPE 398
             G +P 
Sbjct: 358 SSGIKPN 364



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 55/322 (17%)

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDE 242
           I+  N  SH      L+  Y   G +  A  +    P  D  V    ++I  Y   G   
Sbjct: 56  ILTLNLTSH------LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCAN 109

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           + + LF  +       +  T+  V  A   ++++  G+  H+  L     S V + N+L+
Sbjct: 110 KCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALV 169

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MYS+C SL+ +R+VFD MS   V+SWN+++  Y+K G  +  +E+F+ M  E   +PD+
Sbjct: 170 AMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDN 229

Query: 363 VTYLAVLSGCSHGGMEDRG-----LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +T + VL  C+  G    G      AV  E++  ++ F        C+VDM  + G + E
Sbjct: 230 ITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI--QNMFVGN-----CLVDMYAKCGMMDE 282

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A     NM  +              V +N  +               AG        Y+ 
Sbjct: 283 ANTVFSNMSVKDV------------VSWNAMV---------------AG--------YSQ 307

Query: 478 AGRWEDVTRVRELMKEKAVTKD 499
            GR+ED  R+ E M+E+ +  D
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMD 329



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L AC +   LR G+++HA+ ++      P+++   LI  Y KC  +SDAR +FD M  +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF----GFELGK 179
            V+WT++++ Y    +  EAL +F  M R   + +  T   VL +C+ +     G E   
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           ++ ++   S    H    + L+D+  +AGR++ A  + E +P
Sbjct: 604 RMKTVFGVSPGPEHY---ACLVDLLGRAGRLNAALRLIEEMP 642


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 359/579 (62%), Gaps = 12/579 (2%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVY-LRTRLIVFYN-KCECLSDARKMFDE 118
           D+ L+ C    +L   +++HAH+  T  +R P+   R++L+  Y      LS A   F +
Sbjct: 6   DSFLSKCTTL-SLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQ 64

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +R  +   W A+I  + Q  +   A   +  M+    + +  T + VL +CA        
Sbjct: 65  IRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLES 124

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            QIH+ I++  F +   +G++LLD+YAK G I  A  VF+ + +RD+ S  A+ISG+AQ 
Sbjct: 125 IQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH--VLRFEIPSYVV 296
               EA+ LF++++++G   N ++    L+A + L     G+++H +  V RF++ + V 
Sbjct: 185 SKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVC 244

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
             N +IDMY+KCG +  +  VF++MS  + +++WN M++ ++ HG G + +ELF  M ++
Sbjct: 245 --NVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKM-DQ 301

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           + V PD V+YLAVL  C+HGG+ + G  +F+ + +C  G +P ++HYG VVD+LGRAGR+
Sbjct: 302 SGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENC--GVKPNVKHYGSVVDLLGRAGRL 359

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA + + +MP  P   +  +LLGA R H NV+I E V ++L+E+   + G++V+LSN+Y
Sbjct: 360 HEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVY 419

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A+  RW DV RVRE MK + V K PG S+IE + ++H F+ +D+SH    E+ AK+ ++ 
Sbjct: 420 AARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIR 479

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
            + KE GYV + S VL+D+ EE KE VL  HSEKLA+ FGLI T EG PI+VIKNLRIC 
Sbjct: 480 FRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICG 539

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +SK+Y R++ +RD+ RFH   EG CSC DYW
Sbjct: 540 DCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 335/557 (60%), Gaps = 2/557 (0%)

Query: 78   QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
            ++ HA +     +    + T+  + Y     +  A  +F+++       W  MI  ++  
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 138  AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
                 +L L+ +M+    +P++F F   L SCAG    + GK IH  ++     + ++V 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 198  SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
            ++L+DMYAK G I  AR VF+ +  RD+VS T++ISGYA  G + E +  F  ++  G+I
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 258  SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
             N V+  SVL A   L AL  G+  HS+V++      +++  +++DMYSKCGSL  +R +
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 318  FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
            FD  + + ++ W+AM+  Y  HG GR+ ++LF+ M +   V+P  VT+  VLS CSH G+
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG-VRPSHVTFTCVLSACSHSGL 1035

Query: 378  EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
             + G   F  + + +     ++ +Y C+VD+LGRAG++ EA++ I+NMP EP A+I GSL
Sbjct: 1036 LEEGKMYFQLMTE-EFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSL 1094

Query: 438  LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
            LGACR+H N+D+ E +   L  ++P +AG +V+LSN+YA+  RW +V +VR++M  +   
Sbjct: 1095 LGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGAN 1154

Query: 498  KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
            K  G S +E D  +H F   DRSHP  E+L AK+++L+   K  GYVP    VL+D++EE
Sbjct: 1155 KIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEE 1214

Query: 558  QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
             KE  L  HSE+LA+ FGLI T  G  +R+ KNLRIC DCHN  K +SK+  R + +RD 
Sbjct: 1215 AKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDM 1274

Query: 618  NRFHHIVEGTCSCGDYW 634
            +RFH   +G CSCGDYW
Sbjct: 1275 HRFHRFEDGVCSCGDYW 1291



 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 297/491 (60%), Gaps = 1/491 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC     ++ G  VH  +I+  +   + L   L+  Y K  C   A  +F +M E+
Sbjct: 211 SVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK 270

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SW+ MI+ Y+    + EALNLF  M+    EPN  T  + L +CA +   E GK+IH
Sbjct: 271 DVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH 330

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            + +   FE    V ++L+DMY K     EA  +F+ LP++DVVS  A++SGYAQ G+  
Sbjct: 331 KIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAY 390

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +++ +FR +  +G+  + V    +L A S L        +H +V+R    S V +  SLI
Sbjct: 391 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLI 450

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           ++YSKCGSL  + ++F  M  R V+ W++M+  Y  HG G E +E+F+ M + + V+P++
Sbjct: 451 ELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNN 510

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT+L++LS CSH G+ + GL +F  +V       P+ EH+G +VD+LGR G++G+A++ I
Sbjct: 511 VTFLSILSACSHAGLVEEGLKIFDRMVH-DYQLRPDSEHFGIMVDLLGRIGQLGKAMDII 569

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             MP      + G+LLGACR+H+N+++GE   + L  ++P +AG Y++LSN+YA  G+W+
Sbjct: 570 NRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWD 629

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V  +R  +KE+ + K  G+S +E+   +H+F ASDR HP  +++   +++L  +  +  
Sbjct: 630 NVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEV 689

Query: 543 YVPDMSCVLYD 553
           Y+PD+  +L+D
Sbjct: 690 YIPDLDFLLHD 700



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 202/379 (53%), Gaps = 9/379 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L  AC N R++    ++H+ + KT      +  T+L   Y KC  L  ARK+FDE    N
Sbjct: 10  LFQACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIH 182
           V  W + + +Y ++    E L LF  M+ +  E P+ FT    L +CAG    ELGK IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 183 SLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
               K++   S ++VGS+L+++Y+K G++ EA  VFE     D V  T++++GY Q    
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 242 EEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           EEA+ LF ++  ++ ++ + VT  SV++A + L  +  G  VH  V+R E    + L NS
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+++Y+K G    +  +F  M E+ VISW+ M+  Y+ +    E + LF+ M E+ + +P
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK-RFEP 305

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +SVT ++ L  C+     + G  + H+I   K GFE +      ++DM  +     EA++
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKI-HKIAVWK-GFELDFSVSTALIDMYMKCSCPDEAVD 363

Query: 421 FIKNMPFEPTAAILGSLLG 439
             + +P +   + +  L G
Sbjct: 364 LFQRLPKKDVVSWVALLSG 382



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 199/384 (51%), Gaps = 10/384 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L AC   R L  G+ +H    K       +++ + L+  Y+KC  + +A K+F+E +  +
Sbjct: 110 LKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPD 169

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIH 182
            V WT+M++ Y Q     EAL LF +M+  D    +  T  +V+++CA     + G  +H
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVH 229

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+I+  F+  + + +SLL++YAK G    A  +F  +PE+DV+S + +I+ YA      
Sbjct: 230 GLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 289

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNS 300
           EA+ LF ++  +    N VT  S L A +    L  GK++H   +   FE+   V    +
Sbjct: 290 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSV--STA 347

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY KC     +  +F  + ++ V+SW A+L GY+++GM  + + +F  M  +  ++P
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDG-IQP 406

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D+V  + +L+  S  G+  + L +   +V  + GF   +     ++++  + G +G+A++
Sbjct: 407 DAVAVVKILAASSELGIFQQALCLHGYVV--RSGFNSNVFVGASLIELYSKCGSLGDAVK 464

Query: 421 FIKNMPFEPTAAILGSLLGACRVH 444
             K M       I  S++ A  +H
Sbjct: 465 LFKGMIVRDV-VIWSSMIAAYGIH 487



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 28   PNPQN------LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
            PNP +      ++   ++G+   +L    +M   GL+     +   L +C     L+ G+
Sbjct: 779  PNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGK 838

Query: 79   RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
             +H H++       +++   L+  Y KC  +  AR +FD+M  R++VSWT+MIS Y+   
Sbjct: 839  VIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNG 898

Query: 139  HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
            ++ E L  F  M  S   PN  +  +VL +C        G+  HS +I++ FE  I V +
Sbjct: 899  YNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVAT 958

Query: 199  SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
            +++DMY+K G +  AR +F+    +D+V  +A+I+ Y   G   +AI+LF ++   G+  
Sbjct: 959  AIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP 1018

Query: 259  NYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            ++VT+  VL+A S    L  GK     +   F I   +     ++D+  + G L+ +  +
Sbjct: 1019 SHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDL 1078

Query: 318  FDNMS-ERTVISWNAML 333
             +NM  E     W ++L
Sbjct: 1079 IENMPVEPDASIWGSLL 1095



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 3/244 (1%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           F   K+ H+ I     +    + +    MY    RI  A  VFE +P         +I G
Sbjct: 733 FSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRG 792

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           +A  G    ++EL+ K+  +G+  +   +   L + +GL+ L  GK +H H++     + 
Sbjct: 793 FATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSND 852

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           + +  +L+DMY+KCG +  +R VFD M+ R ++SW +M+ GY+ +G   E +  F+LMR 
Sbjct: 853 LFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V P+ V+ L+VL  C + G   +G   FH  V  + GFE +I     ++DM  + G 
Sbjct: 913 SG-VIPNRVSILSVLLACGNLGALRKG-EWFHSYV-IQTGFEFDILVATAIMDMYSKCGS 969

Query: 415 VGEA 418
           +  A
Sbjct: 970 LDLA 973


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 358/613 (58%), Gaps = 17/613 (2%)

Query: 32  NLKTLCSNGQLTKALIEMATLGLEMR-FEE--------YDTLLNACVNQRTLRGGQRVHA 82
           +++ + S   + K  ++   LG+  R F+E        + T++N  +    +   QR+  
Sbjct: 70  SVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFL 129

Query: 83  HMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
            M    +   V     ++  Y +   + +  ++F+EM  R+V+SWT+MI        S E
Sbjct: 130 DM----HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEE 185

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           AL +F +MLRS  EP   TFA VL++CA A  F LG Q+H  ++K     H ++  SL+ 
Sbjct: 186 ALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLIT 245

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
            YA   +I  A  +F     ++VV  TA+++ Y      ++A+ +F  +   G + N  T
Sbjct: 246 FYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQST 305

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           ++  L A  GL AL  GK++H+  ++  + + V + NSL+ MY++CG++  +  VF N++
Sbjct: 306 FSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN 365

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           E+ ++SWN+++VG ++HG G   +  FN M     V P+ +T+  +LS CS  GM  +G 
Sbjct: 366 EKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRG-VDPNEITFTGLLSACSRSGMLLKGR 424

Query: 383 AVFHEIVDCKDG-FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
             F  I   K     P+  HY C+VD+LGR G++ EA E ++ MP +  + I  +LL AC
Sbjct: 425 CFFEYISRYKSNVLRPQ--HYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSAC 482

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
           RVH N+++ E   + ++++EP  +  YV+LSN+YASAGRW DV+R+R  MK+  + K PG
Sbjct: 483 RVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPG 542

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            SW+ L    H F ++DRSHP+ E +  K+  L  K KE GYVPD    L+DV++EQKE+
Sbjct: 543 SSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEE 602

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
           +L  HSE+LA+ FGL+ T EG+ I V+KNLR+C DCH+  K +SK+ GRK+ +RD  RFH
Sbjct: 603 MLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFH 662

Query: 622 HIVEGTCSCGDYW 634
           H   G CSC DYW
Sbjct: 663 HFKNGICSCSDYW 675



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 160/335 (47%), Gaps = 11/335 (3%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P ++L T++I  Y + + L DA K+FD M  R+VVSW +MI       +   A  LF  M
Sbjct: 41  PNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEM 100

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                E N  ++ T++    G   F   +    L +  + +  +   ++++  Y + GR+
Sbjct: 101 ----PEKNVISWTTMVN---GYLKFGRVELAQRLFLDMHVKD-VAAWNAMVHGYFENGRV 152

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            E   +FE +P RDV+S T++I G    G  EEA+ +F+K+   G+   + T+A VL+A 
Sbjct: 153 EEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSAC 212

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           +       G QVH HV++     +  +  SLI  Y+ C  + ++ ++F+    + V+ W 
Sbjct: 213 ANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWT 272

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A+L  Y  +   ++ + +F  M +   + P+  T+   L  C      D+G  +    + 
Sbjct: 273 ALLTAYVWNNKHQDALRVFGDMTKMGAL-PNQSTFSITLKACCGLEALDKGKEI--HTMA 329

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            K G E ++     +V M    G V  A+   +N+
Sbjct: 330 IKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNI 364



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 110/216 (50%), Gaps = 17/216 (7%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++ L  + K  R+ +AR +F+ +P  ++   T +I+GY +     +A++LF ++ V  ++
Sbjct: 16  TTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVV 75

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRR 316
           S    + S++        LG   ++       E+P   V+   ++++ Y K G +  ++R
Sbjct: 76  S----WNSMIKGCLDCGNLGMATRLFD-----EMPEKNVISWTTMVNGYLKFGRVELAQR 126

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +F +M  + V +WNAM+ GY ++G   E V LF    EE  V+ D +++ +++ G    G
Sbjct: 127 LFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLF----EEMPVR-DVISWTSMIGGLDLNG 181

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
             +  L VF +++  + G EP    + CV+     A
Sbjct: 182 KSEEALFVFKKML--RSGVEPTWSTFACVLSACANA 215


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 354/575 (61%), Gaps = 10/575 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC---ECLSDARKMFDEMR 120
           L++ C ++R L    ++ A+ IK+ ++  V   T+LI F  +      +S AR +FD M 
Sbjct: 37  LISKCNSEREL---MQIQAYAIKS-HQEDVSFNTKLINFCTESPTESSMSYARHLFDAMS 92

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E ++V + ++   YS+  +  E  NLF+ +L  D  P+ +TF ++L +CA A   E G+Q
Sbjct: 93  EPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQ 152

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L +K   + ++YV  +L++MY +   +  AR VF+ + E  VV   A+I+GYA+   
Sbjct: 153 LHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNR 212

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LFR++Q + +  N +T  SVL++ + L +L  GK +H +  +     YV +  +
Sbjct: 213 PNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTA 272

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDM++KCGSL  +  +F+NM  +   +W+AM+V Y+ HG     + +F  MR EN V+P
Sbjct: 273 LIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSEN-VQP 331

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T+L +L+ CSH G+ + G   F  +V  + G  P I+HYG +VD+LGRAG + +A E
Sbjct: 332 DEITFLGLLNACSHTGLVEEGREYFSWMVH-EFGIVPSIKHYGSMVDLLGRAGHLEDAYE 390

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  +P  PT  +   LL AC  H N+++ E V +R++E++  + G+YVILSNLYA   +
Sbjct: 391 FIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKK 450

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE V  +R++MK++   K PG S IE++ ++H F + D       +L   + ++  + K 
Sbjct: 451 WEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKL 510

Query: 541 AGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           AGYVPD S V++ D+ +++KE  L  HSEKLA+ FGL+ TP G  IRV+KNLR+C DCH+
Sbjct: 511 AGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHS 570

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            AK +S ++GRKV LRD  RFHH  +G CSC D+W
Sbjct: 571 AAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 2/282 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL AC   + L  G+++H   +K      VY+   LI  Y +CE +  AR +FD + 
Sbjct: 134 FPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIV 193

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E  VV + AMI+ Y+++    EAL+LF  M   + +PNE T  +VL+SCA     +LGK 
Sbjct: 194 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKW 253

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH    K  F  ++ V ++L+DM+AK G + +A  +FE +  +D  + +A+I  YA  G 
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQ 313

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQN 299
            E ++ +F +++ E +  + +T+  +L A S    +  G++  S ++  F I   +    
Sbjct: 314 AENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYG 373

Query: 300 SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           S++D+  + G L  +    D +    T + W  +L   S H 
Sbjct: 374 SMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHN 415


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/570 (37%), Positives = 344/570 (60%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           +++C ++  +  G++ H  ++KT +    Y+R  L+  Y+KC  + DA  +++E+   ++
Sbjct: 140 ISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDI 199

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V++ +++S+  +  +  E L +   M+    + ++ TF    + CA      LG  +H  
Sbjct: 200 VAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGK 259

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           ++ S+ E   YV S++++MY K G+   ARGVF+ L  R+VV  TA+++   Q G  EEA
Sbjct: 260 MLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEA 319

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LF K++ E + SN  TYA +L A +GL+A  +G  +H H  +     +V++ N+LI+M
Sbjct: 320 LNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINM 379

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+K G +  +++VF +M  R +I+WNAM+ G+S HG+G++ + +F  M    +  P+ VT
Sbjct: 380 YAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEE-HPNYVT 438

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           +  VLS C H G+   G    H ++  + G +P +EHY C+V +L + G++ EA  F++ 
Sbjct: 439 FTGVLSACGHLGLVQEGFYYLHHLMK-QFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRT 497

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
            P +       +LL AC VH N  +G +V + ++E++P + G Y +LSN+YA   RW+ V
Sbjct: 498 APVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGV 557

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            +VR+LM++K + K+PG SWIE+  + H F + D  HP   +   KVK+L    K  GY 
Sbjct: 558 VKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYT 617

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD+  VL+DV++EQKE  L  HSEKLA+ +GL+  P  A I VIKNLRIC DCH+  + +
Sbjct: 618 PDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLI 677

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKV  R + +RD NRFHH  +G CSC DYW
Sbjct: 678 SKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 6/365 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           LL    + + L+ G+ +H+H+I T       +     LI FY K   +S A  +FD M E
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPE 94

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           RNVVSW+A+++ Y     S + + L   M+   +  PNE+  A  ++SC      E G+Q
Sbjct: 95  RNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQ 154

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H L++K+ F  H YV ++L+ MY+K   + +A GV+  +P  D+V+  +I+S   + G 
Sbjct: 155 CHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGY 214

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             E +E+ R +  E +  + VT+ +  +  + L  L  G  VH  +L  ++     + ++
Sbjct: 215 LREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSA 274

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           +I+MY KCG    +R VFD +  R V+ W A++    ++G   E + LF+ M +EN VK 
Sbjct: 275 IINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQEN-VKS 333

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  TY  +L+ C+ G    R  ++ H   + K GF+  +     +++M  ++G +  A +
Sbjct: 334 NEFTYAVLLNACA-GLSARRNGSLLHGHSE-KSGFKHHVMVGNALINMYAKSGDIEAAKK 391

Query: 421 FIKNM 425
              +M
Sbjct: 392 VFSDM 396



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 4/177 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LLNAC      R G  +H H  K+ ++  V +   LI  Y K   +  A+K+F +M 
Sbjct: 338 YAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMM 397

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF--ELG 178
            R++++W AMI  +S      +AL +F  ML ++  PN  TF  VL++C G  G   E  
Sbjct: 398 HRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSAC-GHLGLVQEGF 456

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG 234
             +H L+ +   +  +   + ++ + +K G+++EAR      P + DVV+   +++ 
Sbjct: 457 YYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNA 513


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 350/622 (56%), Gaps = 68/622 (10%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---ARKMFDEMRERNVVSWTAMISAYS 135
           ++HA +IKT      ++  +L+     C   +D   AR +FDE+   +   W  MI AY 
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 136 QKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
              +  E+++LF +M   +  P + ++ + V+ +C        G+++H+ ++K    S +
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 195 YVGSSLLDMYAKAGRIHEARGV-------------------------------FECLPER 223
           +V ++L++MYAK G I  AR +                               F+ +PER
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPER 200

Query: 224 DVVSCTAIISGYAQLG-------------------------------LDEEAIELFRKLQ 252
           D+VS   +I G+A LG                                  EA+ LF ++Q
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
           +  ++ + VT  SVL+A   + ALG GK +H  + R  I   + L  SL+DMY+KCG + 
Sbjct: 261 LANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDID 320

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            S RVF+ M+ R V +W+AM++G + HG G   ++ F+ M  E+ +KP+ VT++ VLS C
Sbjct: 321 NSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISED-IKPNDVTFIGVLSAC 379

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           SH G+ D G   F  +    D   P+IEHYGCVVD+LGRAGR+ EA+E IK+MPF P A 
Sbjct: 380 SHIGLVDEGWTYFTSMSKVYD-VSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAI 438

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
           +  +LLGACR++ NV+I E     L+E+EP   GNYV+LSN+Y+ A  W+ V  VR +MK
Sbjct: 439 VWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMK 498

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
              + K PG S IE+D  +H F A D+SHP  +++   + +++ + K  GY P  + VL 
Sbjct: 499 NINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQ 558

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           D DE++KE  L  HSEKLA+ FGL+ T  G+ IR++KNLR+C DCH   K +S+ Y R++
Sbjct: 559 DFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRI 618

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD+NRFHH V G+CSC DYW
Sbjct: 619 IVRDRNRFHHFVNGSCSCKDYW 640



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 153/358 (42%), Gaps = 72/358 (20%)

Query: 48  EMATLGLEMRFEE--------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           E  +L  +MR +E           ++ AC   +    GQ++H  ++K      +++ T L
Sbjct: 87  ESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETAL 146

Query: 100 IVFYNKCECLSDARK-------------------------------MFDEMRERNVVSW- 127
           I  Y K   +  AR                                +FD M ER++VSW 
Sbjct: 147 IEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWN 206

Query: 128 ------------------------------TAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
                                         ++MI+AY++   S EAL LF  M  ++  P
Sbjct: 207 TMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLP 266

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           ++ T  +VL++C       +GK IH  I ++  E  + +G+SL+DMYAK G I  +  VF
Sbjct: 267 DKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVF 326

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
             +  RDV + +A+I G A  G  E A++ F K+  E +  N VT+  VL+A S +  + 
Sbjct: 327 NGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVD 386

Query: 278 HGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            G    + + + +++   +     ++D+  + G L  +  +  +M      I W A+L
Sbjct: 387 EGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC +   L  G+ +H  + +      + L T L+  Y KC  + ++ ++F+ M  R
Sbjct: 273 SVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR 332

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +W+AMI   +       AL+ F +M+  D +PN+ TF  VL++C+     + G    
Sbjct: 333 DVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYF 392

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQ 237
           + + K  +    I     ++D+  +AGR+ EA  + + +P   D +   A++     Y  
Sbjct: 393 TSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKN 452

Query: 238 LGLDEEAIELFRKLQ--VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP--S 293
           + + EEA     +L+  V+G   NYV  +++ +       + + +++  ++   ++P  S
Sbjct: 453 VEIAEEATVNLLELEPHVDG---NYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSS 509

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            + + N++ +  +   S   S+++   +SE T
Sbjct: 510 SIEVDNAVHEFVAGDQSHPESKKILRMLSEIT 541


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 366/613 (59%), Gaps = 17/613 (2%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV----HAHMI 85
           L  LC N +  +A+     M   G+        ++L  CV    L G Q +    H + +
Sbjct: 141 LSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCV----LLGDQVLALVMHVYAV 196

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K      +++   LI  Y K   L +A+ +F  M  R++V+W ++IS   Q+  +  AL 
Sbjct: 197 KHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALK 256

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMY 204
           +F  M  S   P+  T  ++ ++ A        K +H  +++  ++   I  G++++DMY
Sbjct: 257 MFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMY 316

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTY 263
           AK   I  A+ +F+ +P +D VS   +I+GY Q GL  EA+E +  +Q  EG+ +   T+
Sbjct: 317 AKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTF 376

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            SVL A S L AL  G ++H+  ++  +   V +   LID+Y+KCG L  +  +F+ M  
Sbjct: 377 VSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPR 436

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R+   WNA++ G   HG G E + LF+ M++E  +KPD VT++++L+ CSH G+ D+G +
Sbjct: 437 RSTGPWNAIISGLGVHGHGAEALTLFSRMQQEG-IKPDHVTFVSLLAACSHAGLVDQGRS 495

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            F +++       P  +HY C+ DMLGRAG++ EA  FI+NMP +P +A+ G+LLGACR+
Sbjct: 496 FF-DVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRI 554

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H NV++G+   Q L E++PEN G YV++SN+YA  G+W+ V  VR L++ + + K PG S
Sbjct: 555 HGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWS 614

Query: 504 WIELDQILHTFHASDRS--HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            IE+ + ++ F++ +++  HP  EE+ A+++ L  K +  GYV D S VL DV++++KE 
Sbjct: 615 SIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEH 674

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
           +L  HSE+LA+ FG+I TP   P+ + KNLR+C DCHN  K++S++  R++ +RD NRFH
Sbjct: 675 ILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFH 734

Query: 622 HIVEGTCSCGDYW 634
           H  +G CSCGD+W
Sbjct: 735 HFKDGHCSCGDFW 747



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 193/349 (55%), Gaps = 15/349 (4%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP V+    L+  Y +   +S+A K+FDEM ER+V +W AM+S   + A + EA+ LF R
Sbjct: 100 RPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGR 159

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI-----IKSNFESHIYVGSSLLDMY 204
           M+      +  T ++VL  C       LG Q+ +L+     +K   +  ++V ++L+D+Y
Sbjct: 160 MVGEGVAGDTVTVSSVLPMCV-----LLGDQVLALVMHVYAVKHGLDKELFVCNALIDVY 214

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G + EA+ VF  +  RD+V+  +IISG  Q G    A+++F+ ++  G+  + +T  
Sbjct: 215 GKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLV 274

Query: 265 SVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           S+ +A++        K +H +V+R  +++   ++  N+++DMY+K  ++  ++R+FD+M 
Sbjct: 275 SLASAIAQGGDGRSAKSLHCYVMRRGWDVDD-IIAGNAIVDMYAKLSNIEAAQRMFDSMP 333

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            +  +SWN ++ GY ++G+  E VE +  M++   +K    T+++VL   SH G   +G+
Sbjct: 334 VQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGM 393

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
            +    +  K G   ++    C++D+  + G++ EA+   + MP   T 
Sbjct: 394 RM--HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG 440


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 364/620 (58%), Gaps = 51/620 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-- 120
            +L AC +      G++VH + +++     V++   ++  Y KC  + +A K+F+ M+  
Sbjct: 255 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314

Query: 121 ---------------------------------ERNVVSWTAMISAYSQKAHSFEALNLF 147
                                            E NVV+W+A+I+ Y+Q+   FEAL++F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS--NFESH-----IYVGSSL 200
            +ML   +EPN  T  ++L+ CA A     GK+ H   IK   N + +     + V ++L
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 201 LDMYAKAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMI 257
           +DMY+K      AR +F+ +P +D  VV+ T +I G AQ G   EA+ELF + LQ +  +
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 258 -SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV-LQNSLIDMYSKCGSLTYSR 315
             N  T +  L A + L AL  G+Q+H++VLR    S ++ + N LIDMYSK G +  +R
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 554

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VFDNM +R  +SW +++ GY  HG G E +++F  M++   V PD VT++ VL  CSH 
Sbjct: 555 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLV-PDGVTFVVVLYACSHS 613

Query: 376 GMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GM D+G+  F+ +   KD G  P  EHY C+VD+L RAGR+ EA+E I+ MP +PT A+ 
Sbjct: 614 GMVDQGINYFNGM--NKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 671

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            +LL ACRV+ NV++GE+   +L+E+E  N G+Y +LSN+YA+A  W+DV R+R LMK  
Sbjct: 672 VALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNT 731

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K PG SW++  +   TF A D SHPM +++   ++ L  + K  GYVPD    L+DV
Sbjct: 732 GIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDV 791

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           D+E+K  +L  HSEKLAL +G++ T  GAPIR+ KNLR C DCH+   ++S +   ++ +
Sbjct: 792 DDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIV 851

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD +RFHH   G+CSC  YW
Sbjct: 852 RDSSRFHHFKNGSCSCRGYW 871



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 218/427 (51%), Gaps = 52/427 (12%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG       +  +L AC    + R G  VHA +  + +   V++   L+  Y +C  
Sbjct: 136 MQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGA 195

Query: 109 LSDARKMFDEMRERNV---VSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFAT 164
             +AR++FDEMRER V   VSW ++++AY Q   S  A+ +F RM       P+  +   
Sbjct: 196 WENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 255

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           VL +CA    +  GKQ+H   ++S     ++VG++++DMYAK G + EA  VFE +  +D
Sbjct: 256 VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKD 315

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA--------------- 269
           VVS  A+++GY+Q+G  ++A+ LF K++ E +  N VT+++V+                 
Sbjct: 316 VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 375

Query: 270 -----------------LSGLAALG---HGKQVHSHVLRF-------EIPSYVVLQNSLI 302
                            LSG A+ G   HGK+ H H +++       +    +++ N+LI
Sbjct: 376 QMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALI 435

Query: 303 DMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVK 359
           DMYSKC S   +R +FD +   +R+V++W  ++ G ++HG   E +ELF+ +++ +N V 
Sbjct: 436 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 495

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEA 418
           P++ T    L  C+  G    G  +   ++  ++ FE  +     C++DM  ++G V  A
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVL--RNRFESAMLFVANCLIDMYSKSGDVDAA 553

Query: 419 LEFIKNM 425
                NM
Sbjct: 554 RVVFDNM 560



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           TL + C   ++L   +  H  + ++     P ++ +  + F +  + LS  R++      
Sbjct: 53  TLFHQC---KSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPS--S 107

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
             V  W  +I          + L L+ RM R    P+ +TF  VL +C     F  G  +
Sbjct: 108 HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 167

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQL 238
           H+++  S FE +++VG+ L+ MY + G    AR VF+ + ER   D+VS  +I++ Y Q 
Sbjct: 168 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 227

Query: 239 GLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           G    A+++F ++  + G+  + V+  +VL A + + A   GKQVH + LR  +   V +
Sbjct: 228 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFV 287

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+++DMY+KCG +  + +VF+ M  + V+SWNAM+ GYS+ G   + + LF  +REE K
Sbjct: 288 GNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE-K 346

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           ++ + VT+ AV++G +  G+    L VF +++ C  G EP +
Sbjct: 347 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLC--GSEPNV 386


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 346/577 (59%), Gaps = 9/577 (1%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +TLL+   + R+L  G ++HAH+IK   +    L   LI FY+K      + ++F +   
Sbjct: 25  NTLLSLTFS-RSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPH 83

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           ++  +W+++IS+++Q      +LN F  MLR    P++  F +   SC       + K +
Sbjct: 84  KSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKML 143

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H   +K+ +   I+VGSS++DMYAK G I  A  VF+ +P R+VVS + +I GY QLG D
Sbjct: 144 HCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGED 203

Query: 242 EEAIELFRKLQVE----GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           +E++ LF++  VE    G+  N  T +SVL    G   L  G+ +H    +    S   +
Sbjct: 204 DESLRLFKRFLVEEENEGV--NDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFV 261

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            +SLI +YSKCG +  +  VF+ ++ R +  WNAML+  ++H    +  ELF+ M+    
Sbjct: 262 ASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGG 321

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +K + +T+L VL  CSH G+ ++G   F  + D   G EP  +HY  +VD+LGRAG++ +
Sbjct: 322 MKANFITFLCVLYACSHAGLVEKGKYYFELMKDY--GIEPGTQHYSTMVDLLGRAGKLND 379

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A++ I+ MP EPT ++ G+LL  CR+H N  +  +V  R+ E+   ++G +V+LSN YA+
Sbjct: 380 AVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAA 439

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AGRWE+  + R++M+++ + K+ G SW+E    +HTF A DRSH    E+  K+ +L  +
Sbjct: 440 AGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEE 499

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             +AGYV D S VL +VD E+K + +  HSE+LA+ FG I  P G PIRV+KNLR+C DC
Sbjct: 500 MDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDC 559

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   KF+SK  GR + +RD NRFH   +G C+CGDYW
Sbjct: 560 HTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 148/284 (52%), Gaps = 4/284 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +   +C    +L   + +H   +KT Y   +++ + +I  Y KC  +  A  +FDEM 
Sbjct: 124 FPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMP 183

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELG 178
            RNVVSW+ +I  Y Q     E+L LF R L  +     N+FT ++VL  C G+   ++G
Sbjct: 184 YRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG 243

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH L  K++F+S  +V SSL+ +Y+K G + EA  VFE +  R++    A++   AQ 
Sbjct: 244 RLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQH 303

Query: 239 GLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
              ++  ELF K++ V GM +N++T+  VL A S    +  GK     +  + I      
Sbjct: 304 AHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQH 363

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
            ++++D+  + G L  + ++ + M  E T   W A+L G   HG
Sbjct: 364 YSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHG 407



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 96/220 (43%), Gaps = 3/220 (1%)

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           Y    + L +L+   +L  G Q+H+H+++  + +  +L + LI+ YSK      S ++F 
Sbjct: 20  YRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFH 79

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           +   ++  +W++++  ++++ +    +  F LM  +  V PD   + +    C  G +  
Sbjct: 80  DSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQG-VPPDDHIFPSATKSC--GILSS 136

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
             +A        K  +  +I     V+DM  + G +  A      MP+    +  G + G
Sbjct: 137 LPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYG 196

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
             ++  + +      + L+E E E   ++ + S L    G
Sbjct: 197 YVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGG 236


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/506 (42%), Positives = 319/506 (63%), Gaps = 3/506 (0%)

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           M   YS+     EAL +++ ML +  EP  F F+T L +CA      +G+ +H+ ++KS+
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
                 V + LL +Y +    +E   VF+ +PER+V S  ++ISG+ +     EA+++FR
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++Q EGM  ++VT  ++L   + + AL  GK++H+ +++      V++ NSL+DMY KCG
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCG 180

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            + Y RR+FD M  + + SWN ML GY+ +G  R  ++LFN M     ++PD VT++A+L
Sbjct: 181 VVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEM-ASCGIRPDDVTFIALL 239

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           SGCSH G+ + G  +FH + +   G  P +EHY C+VDMLGRAGR+  AL  +KNMP + 
Sbjct: 240 SGCSHAGLTEDGQKLFHRM-EMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKT 298

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
           + +I GSLL +CR+H  V + E +  RL E+EP N GNYV+LSN+YA+AG W+ V  VRE
Sbjct: 299 SGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVRE 358

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV-KQLSVKFKEAGYVPDMS 548
           +M+ + + K+ G SWI++   +H+F A         +   K+  +L    +E GY+P+  
Sbjct: 359 MMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTD 418

Query: 549 CVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
            VL+DV+EE K   + GHSE+LA  F LI T  G PIR+ KNLR+CVDCH++ K VS+V 
Sbjct: 419 VVLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVT 478

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GR + LRD NRFHH  EG CSC DYW
Sbjct: 479 GRVIVLRDTNRFHHFKEGACSCNDYW 504



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG L +AL   +EM    +E     + T L AC + R L  G+ VHA ++K+   P   +
Sbjct: 8   NGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVV 67

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +CEC ++  K+FD+M ERNV SW ++IS + ++    EAL++F RM R   
Sbjct: 68  NNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGM 127

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             +  T  T+L  CA       GK+IH+ I+KS     + V +SL+DMY K G +   R 
Sbjct: 128 GFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRR 187

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS--GL 273
           +F+ +  +D+ S   +++GYA  G    A++LF ++   G+  + VT+ ++L+  S  GL
Sbjct: 188 LFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGL 247

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAM 332
              G  K  H   + F +   +     L+DM  + G +  +  V  NM  +T  S W ++
Sbjct: 248 TEDGQ-KLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSL 306

Query: 333 L 333
           L
Sbjct: 307 L 307


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 346/565 (61%), Gaps = 8/565 (1%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
            L  G  VHA+ IK      +++   LI  Y KC C+      F+ M E++++SWT +I+
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 133 AYSQKAHSFEALNLF--IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
            Y+Q     +ALNL   +++ + D +P      ++L +C+G    +L K+IH  ++K   
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDP--MMIGSILLACSGLKSEKLIKEIHGYVLKGGL 484

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
            + I + ++++++Y +   +  AR VFE +  +D+VS T++I+     GL  EA+ELF  
Sbjct: 485 -ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNS 543

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           L    +  + +T  SVL A + L++L  GK++H  ++R       ++ NSL+DMY++CG+
Sbjct: 544 LIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGT 603

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R +F+ + +R +I W +M+     HG G++ ++LF+ M +EN V PD +T+LA+L 
Sbjct: 604 MENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDEN-VLPDHITFLALLY 662

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+   G   F EI+  +   EP  EHY C+VD+L R+  + EA  F++NMP EP+
Sbjct: 663 ACSHSGLVVEGKQHF-EIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPS 721

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A +  +LLGACR+H N D+GE   ++L+++  EN+GNYV++SN +A+ GRW DV  VR +
Sbjct: 722 AEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSI 781

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE-AGYVPDMSC 549
           MK   + K PG SWIE++  +HTF A D+SHP    +  K+ Q +   KE  GY      
Sbjct: 782 MKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKL 841

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           V +DV EE+K ++L GHSE+LAL +GL+ T +G  +R+ KNLRIC DCH F K  S++  
Sbjct: 842 VFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQ 901

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + +RD +RFHH   G CSCGD+W
Sbjct: 902 RTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 208/417 (49%), Gaps = 30/417 (7%)

Query: 22  TVPSFPPNPQNLKTLCSNGQLTKALIEMAT--LGLEMRF---EEYDTLLNACVNQRTLRG 76
           T+P+F   P +LK      +  ++L    T  L    RF   + Y   L  C + + L  
Sbjct: 11  TLPTFSHRPISLK------EAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQ 64

Query: 77  GQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           GQ++HAH +KT  Y   V+L T+ +  Y KC    DA K+FD+M ER + +W AMI A  
Sbjct: 65  GQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACV 124

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 EA+ L+  M       + FTF  VL +C       LG +IH + +K  +   ++
Sbjct: 125 SAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVF 184

Query: 196 VGSSLLDMYAKAGRIHEARGVFEC--LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           V ++L+ MYAK G +  AR +F+   + + D VS  +IIS +   G   EA+ LFR++Q 
Sbjct: 185 VCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQE 244

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G+ SN  T+ S L A  G   +  G+ +H+ +L+    + V + N+LI MY+ CG +  
Sbjct: 245 VGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMED 304

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF +M  +  +SWN +L G  ++ M  + +  F  M++  + KPD V+ L +++   
Sbjct: 305 AERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASG 363

Query: 374 H-----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV---GEALEFI 422
                  GME    A+ H       G +  +     ++DM G+   V   G A E++
Sbjct: 364 RSANLLAGMEVHAYAIKH-------GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYM 413



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 202/370 (54%), Gaps = 4/370 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +G+E     + + L AC     ++ G+ +HA ++K+ +   VY+   LI  Y  C  
Sbjct: 242 MQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQ 301

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DA ++F  M  ++ VSW  ++S   Q     +A+N F  M  S  +P++ +   ++ +
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
              +     G ++H+  IK   +S++++G+SL+DMY K   +      FE +PE+D++S 
Sbjct: 362 SGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISW 421

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T II+GYAQ     +A+ L RK+Q+E M  + +   S+L A SGL +    K++H +VL+
Sbjct: 422 TTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK 481

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   +++QN+++++Y +   + Y+R VF++++ + ++SW +M+     +G+  E +EL
Sbjct: 482 GGLAD-ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALEL 540

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           FN + E N ++PD +T ++VL   +      +G  +   ++  + GF  E      +VDM
Sbjct: 541 FNSLIETN-IEPDLITLVSVLYAAAALSSLKKGKEIHGFLI--RKGFFLEGLIANSLVDM 597

Query: 409 LGRAGRVGEA 418
             R G +  A
Sbjct: 598 YARCGTMENA 607



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 179/328 (54%), Gaps = 3/328 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG+ +    +  +L AC   +  R G  +H   +K  Y   V++   LI  Y KC 
Sbjct: 138 EMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCG 197

Query: 108 CLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            L  AR +FD   M + + VSW ++ISA+  +  S EAL+LF RM     E N +TF + 
Sbjct: 198 DLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSA 257

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +C G    ++G+ IH++I+KSN  + +YV ++L+ MYA  G++ +A  VF+ +  +D 
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS   ++SG  Q  +  +AI  F+ +Q  G   + V+  +++ A    A L  G +VH++
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAY 377

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            ++  I S + + NSLIDMY KC  + Y    F+ M E+ +ISW  ++ GY+++    + 
Sbjct: 378 AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDA 437

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCS 373
           + L   ++ E K+  D +   ++L  CS
Sbjct: 438 LNLLRKVQLE-KMDVDPMMIGSILLACS 464



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 102/213 (47%), Gaps = 8/213 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A     +L+ G+ +H  +I+  +     +   L+  Y +C  + +AR +F+ +++R
Sbjct: 558 SVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQR 617

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++ WT+MI+A        +A++LF +M   +  P+  TF  +L +C+ +     GKQ H
Sbjct: 618 DLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ-H 676

Query: 183 SLIIKSNFESHIYVG--SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL-- 238
             I+K+ ++   +    + L+D+ A++  + EA      +P          + G  ++  
Sbjct: 677 FEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHS 736

Query: 239 --GLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
              L E A +   +L  E    NYV  ++   A
Sbjct: 737 NNDLGEVAAKKLLQLNTENS-GNYVLVSNTFAA 768


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 357/619 (57%), Gaps = 15/619 (2%)

Query: 29  NPQNLKTLCS-------NGQLTKALIEMATLGLEMRFEE---YDTLLNACVNQRTLRGGQ 78
           NP+ + T  S       N + T AL+  + +  E        +  +  A  +      G+
Sbjct: 70  NPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGK 129

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           ++HA  +K      V++       Y+K     +AR MFDEM  RN+ +W A +S   Q  
Sbjct: 130 QLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDG 189

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +A+  F + L  D EPN  TF   L +CA     ELG+Q+H  I++S +   + V +
Sbjct: 190 RCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFN 249

Query: 199 SLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            L+D Y K G I  +  VF  +    R+VVS  ++++   Q   +E A  +F + + E  
Sbjct: 250 GLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEVE 309

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            ++++  +SVL+A + L  L  G+ VH+  L+  +   + + ++L+D+Y KCGS+ Y+ +
Sbjct: 310 PTDFMI-SSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHG 375
           VF  M ER +++WNAM+ GY+  G     + LF  M   +  +    VT ++VLS CS  
Sbjct: 369 VFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRA 428

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G  +RGL +F E +  + G EP  EHY CVVD+LGR+G V  A EFIK MP  PT ++ G
Sbjct: 429 GAVERGLQIF-ESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWG 487

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGAC++H    +G+   ++L E++P+++GN+V+ SN+ ASAGRWE+ T VR+ M++  
Sbjct: 488 ALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIG 547

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K+ G SW+ +   +H F A D  H    E+ A + +L  + K+AGYVPD +  L+D++
Sbjct: 548 IKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLE 607

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+K   +  HSEK+AL FGLI  P G PIR+ KNLRIC+DCH+  KF+SK+ GR++ +R
Sbjct: 608 EEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVR 667

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFH   +G CSC DYW
Sbjct: 668 DNNRFHRFKDGWCSCKDYW 686



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 201/427 (47%), Gaps = 8/427 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           + L + V  R+   G+ VHAH+++T   P P +L   L+  Y+K +  + A+ +      
Sbjct: 12  SFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNP 71

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R VV+WT++IS          AL  F  M R    PN+FTF  V  + A       GKQ+
Sbjct: 72  RTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQL 131

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+L +K      ++VG S  DMY+K G   EAR +F+ +P R++ +  A +S   Q G  
Sbjct: 132 HALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRC 191

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            +AI  F+K        N +T+ + L A + + +L  G+Q+H  ++R      V + N L
Sbjct: 192 LDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGL 251

Query: 302 IDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           ID Y KCG +  S  VF  +    R V+SW ++L    ++        +F   R+E  V+
Sbjct: 252 IDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE--VE 309

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P      +VLS C+  G  + G +V    +  K   E  I     +VD+ G+ G +  A 
Sbjct: 310 PTDFMISSVLSACAELGGLELGRSV--HALALKACVEENIFVGSALVDLYGKCGSIEYAE 367

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +  + MP E       +++G      +VD+   + Q +       A +YV L ++ ++  
Sbjct: 368 QVFREMP-ERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACS 426

Query: 480 RWEDVTR 486
           R   V R
Sbjct: 427 RAGAVER 433


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 341/562 (60%), Gaps = 4/562 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ VHA+ IK        +   L+  Y KC  +  +  +FD MR ++ +SWT +I+ 
Sbjct: 382 LLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITC 441

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q +   EAL +F    +   + +     ++L +C+G     L KQ+H   I++     
Sbjct: 442 YAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLD- 500

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + V + ++D+Y + G ++ +  +FE + ++D+V+ T++I+ YA  GL  EA+ LF ++Q 
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +  + V   S+L A+ GL++L  GK+VH  ++R        + +SL+DMYS CGSL+ 
Sbjct: 561 TDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSG 620

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + +VF+ +  + ++ W AM+     HG G++ ++LF  M +   V PD V++LA+L  CS
Sbjct: 621 ALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTG-VTPDHVSFLALLYACS 679

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H  + + G   + +++      EP  EHY CVVD+LGR+G+  EA EFIK+MP +P + +
Sbjct: 680 HSKLVNEG-KCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVV 738

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             SLLGACRVH N ++      RL+E+EP+N GNYV++SN++A  G+W +   VR  + E
Sbjct: 739 WCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISE 798

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCVLY 552
           + + KDP  SWIE+   +HTF   D SH   E ++ K+ +++ +  KE GY  D   VL+
Sbjct: 799 RGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLH 858

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           DV EE+K  VL  HSE+LA++FGLI T  G P+R+ KNLR+C DCH F K VSK++ R +
Sbjct: 859 DVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDI 918

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD NRFHH   G+CSCGD+W
Sbjct: 919 VVRDANRFHHFSGGSCSCGDFW 940



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 15/378 (3%)

Query: 10  AFSSLTFTQQQLTVPSF-PPNPQNLKTLCSNGQLTKAL--IEMATLGLEMRFEEYDTLLN 66
           +F    + +   T PS  PP+P +LK LC  G L +AL  +   T G     E Y  +L+
Sbjct: 7   SFPPNPYKKFSTTPPSISPPDPTSLKQLCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLD 66

Query: 67  ACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
               ++ +  G +VHAH + T        +L T+L+  Y KC  ++DAR +FD M  R V
Sbjct: 67  LVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTV 126

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLR----SDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            SW A+I AY     + EAL ++ R +R    S   P+  T A+VL +         G +
Sbjct: 127 FSWNALIGAYLSSGSACEALGVY-RAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCE 185

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLG 239
           +H L +K   +   +V ++L+ MYAK G +  A  VFE + + RDV S  ++ISG  Q G
Sbjct: 186 VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ- 298
           +  +A++LFR +Q   +  N  T   VL   + LA L  G+++H+ +L+    S V +Q 
Sbjct: 246 MFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS--GSEVNIQC 303

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+L+ MY+KCG +  + RVF  + E+  ISWN+ML  Y ++G+  E +E  + M      
Sbjct: 304 NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEML-RGGF 362

Query: 359 KPDSVTYLAVLSGCSHGG 376
           +PD    +++ S   H G
Sbjct: 363 QPDHACIVSLSSAVGHLG 380



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 180/352 (51%), Gaps = 6/352 (1%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISA 133
           R G  VH   +K       ++   LI  Y KC  L  A ++F+ M + R+V SW +MIS 
Sbjct: 181 RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISG 240

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
             Q     +AL+LF  M R+    N +T   VL  C       LG+++H+ ++KS  E +
Sbjct: 241 CLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN 300

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           I   ++LL MY K GR+  A  VF  + E+D +S  +++S Y Q GL  EAIE   ++  
Sbjct: 301 IQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G   ++    S+ +A+  L  L +GK+VH++ ++  + S   + N+L+DMY KC  + Y
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           S  VFD M  +  ISW  ++  Y++     E +E+F   ++E  +K D +   ++L  CS
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG-IKVDPMMIGSILEACS 478

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             G+E   LA        ++G   ++     ++D+ G  G V  +L+  + +
Sbjct: 479 --GLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETV 527



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 105/203 (51%), Gaps = 12/203 (5%)

Query: 38  SNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           ++G L +AL+   EM +  ++       ++L A     +L  G+ VH  +I+  +     
Sbjct: 544 NSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEA 603

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           + + L+  Y+ C  LS A K+F+ ++ +++V WTAMI+A     H  +A++LF RML++ 
Sbjct: 604 IVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTG 663

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS----NFESHIYVGSSLLDMYAKAGRI 210
             P+  +F  +L +C+ +     GK    +++ +     ++ H    + ++D+  ++G+ 
Sbjct: 664 VTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHY---ACVVDLLGRSGQT 720

Query: 211 HEARGVFECLP--ERDVVSCTAI 231
            EA    + +P   + VV C+ +
Sbjct: 721 EEAYEFIKSMPLKPKSVVWCSLL 743



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEI--PSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           Y  VL  ++   A+  G QVH+H +           L   L+ MY KCG +  +R +FD 
Sbjct: 61  YGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDG 120

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMR--EENKVKPDSVTYLAVLS-----GCS 373
           MS RTV SWNA++  Y   G   E + ++  MR    + V PD  T  +VL      G  
Sbjct: 121 MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDG 180

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
             G E  GLAV H       G +        ++ M  + G +  A+   + M      A 
Sbjct: 181 RCGCEVHGLAVKH-------GLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVAS 233

Query: 434 LGSLLGAC 441
             S++  C
Sbjct: 234 WNSMISGC 241


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 354/606 (58%), Gaps = 40/606 (6%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +++  +N   + AL+    MA  G++     Y  +L A      L  G ++HA +++   
Sbjct: 109 IRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGL 168

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V++   LI  Y KC CL +A ++ D+M  R+VVSW ++++  ++     +AL +   
Sbjct: 169 DLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 228

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M     +P+  T A++L +                           V ++ LD       
Sbjct: 229 MELLGLKPDAGTMASLLPA---------------------------VTNTCLD------N 255

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +   + +F  L  + +VS   +I+ Y    +  EA+++F +++   +  + ++ ASVL A
Sbjct: 256 VSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPA 315

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L+AL  G+++H +V+R  +   ++L+N+LIDMY+KCG L Y+R VFD M  R V+SW
Sbjct: 316 CGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSW 375

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            +M+  Y  +G GR+ V LF+ M++   + PDS+ +++VLS CSH G+ D G   F  + 
Sbjct: 376 TSMISAYGMNGKGRDAVSLFSRMQDLG-LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMT 434

Query: 390 D-CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           + CK    P IEH+ C+VD+LGRAG+V EA  FIK MP EP   + G+LL ACRV+ N+ 
Sbjct: 435 EECK--IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMI 492

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           IG     +L ++ PE +G YV+LSN+YA AGRWEDVT VR +MK K + K PG S  ELD
Sbjct: 493 IGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELD 552

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +HTF A D+SHP  +++  ++     K KEAGYVP+    L+DV+EE KE  L  HSE
Sbjct: 553 NRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSE 612

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F ++ T  G+PIR+ KNLR+C DCH  AK +SK+ GR++++RD NRFHH   G C
Sbjct: 613 KLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVC 672

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 673 SCGDYW 678



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 167/333 (50%), Gaps = 36/333 (10%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L  +L+  Y  C      R +FDE+ ++NVV +  MI +Y       +AL +F  M    
Sbjct: 73  LGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHG 132

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            +P+ +T+  VL + +G+    +G QIH+ +++   + +++VG+ L+ MY K G + EA 
Sbjct: 133 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 192

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            V + +P RDVVS  ++++G A+ G  ++A+E+ +++++ G+  +  T AS+L A++   
Sbjct: 193 RVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT--- 249

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
                                   N+ +D      ++++ + +F  ++ ++++SWN M+ 
Sbjct: 250 ------------------------NTCLD------NVSFVKEMFMKLANKSLVSWNVMIA 279

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            Y  + M  E V++F L  E++ V PD+++  +VL  C        G  +   +V  +  
Sbjct: 280 VYMNNSMPAEAVDIF-LQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVV--RKR 336

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
            +P +     ++DM  + G +  A E    M F
Sbjct: 337 LQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 369



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 39/346 (11%)

Query: 179 KQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           K++HS I I  +  S+  +G  L+  YA  G     R +F+ +P+++VV    +I  Y  
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
             L  +A+ +F+ +   G+  ++ TY  VL A SG   L  G Q+H+ V+R  +   V +
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 174

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N LI MY KCG L  + RV D M  R V+SWN+++ G +++G   + +E+   M E   
Sbjct: 175 GNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM-ELLG 233

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLA--VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           +KPD+ T  ++L   ++  +++      +F ++ +        +  +  ++ +       
Sbjct: 234 LKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLAN------KSLVSWNVMIAVYMNNSMP 287

Query: 416 GEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGE-FVGQRLME------IEP--- 462
            EA++    M     +P A  + S+L AC      D+    +G+R+ E      ++P   
Sbjct: 288 AEAVDIFLQMEDHAVDPDAISIASVLPACG-----DLSALLLGRRIHEYVVRKRLQPNLL 342

Query: 463 -ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
            ENA     L ++YA  G  E    V + MK + V      SW  +
Sbjct: 343 LENA-----LIDMYAKCGCLEYAREVFDQMKFRDVV-----SWTSM 378


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 350/606 (57%), Gaps = 34/606 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+  C   R L  G++VH H+  + + P + +  R++  Y KC  L DARK+FDEM 
Sbjct: 90  YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMP 149

Query: 121 ERNVVSW-------------------------------TAMISAYSQKAHSFEALNLFIR 149
           ER+V SW                               TAM++ Y +K    EAL L+  
Sbjct: 150 ERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSL 209

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M R  +++PN FT ++ + + A       GK+IH  I+++  +S   + SSL+DMY K G
Sbjct: 210 MQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG 269

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            I EAR +F+ + ++DVVS T++I  Y +     E   LF +L       N  T++ VL 
Sbjct: 270 CIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLN 329

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L     G+QVH ++ R     Y    +SLIDMY+KCG++  +R V D   +  ++S
Sbjct: 330 ACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVS 389

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
             +++ GY+++G   E ++ F+L+ +    KPD VT++ VLS C+H G+ ++GL  F+ I
Sbjct: 390 LTSLIGGYAQNGKPDEALKYFDLLLKSG-TKPDHVTFVNVLSACTHAGLVEKGLEFFYSI 448

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + K       +HY C+VD+L R+GR  +    +  MP +P+  +  S+LG C  + N+D
Sbjct: 449 TE-KHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNID 507

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E   Q L +IEPEN   YV ++N+YA+AG+WE+  ++R+ M+E  +TK PG SW E+ 
Sbjct: 508 LAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIK 567

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
           +  H F A+D SHPM  ++   + +L  K KE GYVP  S VL+DV++EQKE+ L+ HSE
Sbjct: 568 RKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSE 627

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F ++ T EG  I+V KNLR CVDCH+  KF+SK+  RK+++RD  RFH    G C
Sbjct: 628 KLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQC 687

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 688 SCRDYW 693



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 36/325 (11%)

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
           +++L    +P   T+  ++  C+     E GK++H  I  S F   I + + +L MYAK 
Sbjct: 76  VQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKC 135

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL------QVEGMISNYV 261
           G + +AR VF+ +PERDV S   +++GYA++GL EEA  LF ++          M++ YV
Sbjct: 136 GSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYV 195

Query: 262 TY-----ASVLTAL---------------------SGLAALGHGKQVHSHVLRFEIPSYV 295
                  A VL +L                     + +  +  GK++H H++R  + S  
Sbjct: 196 KKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDE 255

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL +SL+DMY KCG +  +R +FD + ++ V+SW +M+  Y K    RE   LF+ +   
Sbjct: 256 VLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGS 315

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            + +P+  T+  VL+ C+    E+ G  V   +   + GF+P       ++DM  + G +
Sbjct: 316 CE-RPNEYTFSGVLNACADLTTEELGRQVHGYMT--RVGFDPYSFASSSLIDMYTKCGNI 372

Query: 416 GEALEFIKNMPFEPTAAILGSLLGA 440
             A   +   P +P    L SL+G 
Sbjct: 373 ESARHVVDGCP-KPDLVSLTSLIGG 396


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 354/601 (58%), Gaps = 27/601 (4%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   + L    +M  LG+++      ++L  C    TL  G+ VH+  IK+ +   + 
Sbjct: 90  SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRIN 149

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A ++F++M ERNVVSWT+MI+ Y++   S  A+ L  +M +  
Sbjct: 150 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 209

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +     ++L +CA +   + GK +H  I  +N  S+++V ++L+DMYAK G +  A 
Sbjct: 210 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGAN 269

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D++S   ++    +L  D                    T A +L A + L+
Sbjct: 270 SVFSTMVVKDIISWNTMV---GELKPDSR------------------TMACILPACASLS 308

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GK++H ++LR    S   + N+L+D+Y KCG L  +R +FD +  + ++SW  M+ 
Sbjct: 309 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 368

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG G E +  FN MR+   ++PD V+++++L  CSH G+ ++G   F+ I+     
Sbjct: 369 GYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY-IMKNDFN 426

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP++EHY C+VD+L R G + +A +FI+ +P  P A I G+LL  CR+++++++ E V 
Sbjct: 427 IEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 486

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN G YV+L+N+YA A +WE+V R+RE + +K + K+PG SWIE+   ++ F
Sbjct: 487 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLF 546

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              ++ SHP  +++ + +K++  K KE GY P     L + DE QKE  L GHSEKLA+ 
Sbjct: 547 VSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMA 606

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P    IRV KNLR+C DCH  AKF+SK   R++ LRD NRFHH  +G CSC  +
Sbjct: 607 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGF 666

Query: 634 W 634
           W
Sbjct: 667 W 667



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 188/368 (51%), Gaps = 28/368 (7%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A ++FD++ +R+V+SW +MIS Y     +   L ++ +M+    + +  T  +VL  CA 
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +    LGK +HSL IKS+FE  I   ++LLDMY+K G +  A  VFE + ER+VVS T++
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+GY + G  + AI L ++++ EG+  + V   S+L A +   +L +GK VH ++    +
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            S + + N+L+DMY+KCGS+  +  VF  M  + +ISWN M+                  
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------------ 287

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
                ++KPDS T   +L  C+     +RG  +   I+  ++G+  +      +VD+  +
Sbjct: 288 ----GELKPDSRTMACILPACASLSALERGKEIHGYIL--RNGYSSDRHVANALVDLYVK 341

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVI 470
            G +G A      +P +   +    + G     Y N  I  F   R   IEP+       
Sbjct: 342 CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---F 398

Query: 471 LSNLYASA 478
           +S LYA +
Sbjct: 399 ISILYACS 406



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 51/284 (17%)

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
           +L+ FY  C  L + R++FD M ++NV  W  M+S Y++     E++ LF  M+    E 
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE- 59

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
                               GK                             R   A  +F
Sbjct: 60  --------------------GK-----------------------------RSESASELF 70

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + L +RDV+S  ++ISGY   GL E  + +++++   G+  +  T  SVL   +    L 
Sbjct: 71  DKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLS 130

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK VHS  ++      +   N+L+DMYSKCG L  + RVF+ M ER V+SW +M+ GY+
Sbjct: 131 LGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           + G     + L   M +E  VK D V   ++L  C+  G  D G
Sbjct: 191 RDGWSDGAIILLQQMEKEG-VKLDVVAITSILHACARSGSLDNG 233



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE------ 354
           L+  Y+ CG L   RRVFD M ++ V  WN M+  Y+K G  +E + LF +M E      
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 355 ---------ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
                    +     D +++ +++SG    G+ +RGL ++ +++
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 105


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/570 (39%), Positives = 346/570 (60%), Gaps = 10/570 (1%)

Query: 71  QRTLRGG--QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD----ARKMFDEMRERNV 124
           +R  R G  + + AHM++       +L ++LI   +    LS     A ++F      N+
Sbjct: 15  KRCTRVGDLKAIQAHMVRANLTQDTFLTSKLI--ESSAVTLSGHVAYAHRIFSCTHHPNL 72

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
             W  +I  YS       A+ L+  M      PN +TF  VL +C        G+++HS 
Sbjct: 73  FMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQ 132

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           I+K   +    + + L+ +YA  G +  A  +F+ +PE D  S + ++SGYAQ G   EA
Sbjct: 133 IVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEA 192

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           ++LFR++Q E + S+  T ASV+     L AL  GK VHS++ +  +   VVL  +L+ M
Sbjct: 193 LKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGM 252

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCGSL  + +VF  M+ER V +W+ M+ GY+ HG G + ++LF+ M+  +K  P+ VT
Sbjct: 253 YSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKR-SKTIPNCVT 311

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           + +VLS CSH G+ ++G  +F E +  +    P+I+HYGC+VD+  RAG VG A +FI+ 
Sbjct: 312 FTSVLSACSHSGLVEKGHQIF-ETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQT 370

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP EP   +  +LLGAC+ H   D+GE + +++++++P +  NYV++SN+YAS GRW  V
Sbjct: 371 MPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSV 430

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            +VR LMK+KA  K  G S IE++ ++H F   D SHP RE++   + Q++ K K+ G+V
Sbjct: 431 CQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHV 490

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
                VL+D+DEE+KE  L  HSE+LA+ +GL+ TP G+PIR++KNLR+C DCH   K +
Sbjct: 491 NSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLI 550

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           S+VY R++ +RD+ RFHH  E  CSC DYW
Sbjct: 551 SEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 2/295 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      +  +L AC     L  GQ +H+ ++K        L   LI  Y  C 
Sbjct: 97  DMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACG 156

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+  A  MFDEM E +  SW+ M+S Y+Q   + EAL LF  M   +   + FT A+V+ 
Sbjct: 157 CMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVG 216

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            C      +LGK +HS + K   +  + +G++L+ MY+K G +  A  VF+ + ERDV +
Sbjct: 217 VCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTA 276

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            + +I+GYA  G  E+A++LF  ++    I N VT+ SVL+A S    +  G Q+   + 
Sbjct: 277 WSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMW 336

Query: 288 -RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
             ++I   +     ++D++ + G + ++ +    M  E  V+ W  +L     HG
Sbjct: 337 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/532 (41%), Positives = 325/532 (61%), Gaps = 11/532 (2%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP------NEFTF 162
           L+ AR +FD M  R+  SW+A++SA+ +      AL ++ RMLR   EP      NEFT 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLR---EPGGSGADNEFTA 165

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           ++ L +   A     G+++H  +++   ++   V S+L DMYAK GR+ +AR VF+ +P 
Sbjct: 166 SSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPV 225

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RDVVS TA++  Y   G D E   LF ++   G++ N  TYA VL A +   +   GKQV
Sbjct: 226 RDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQV 285

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  + +          ++L+ MYSK G +  + RVF  M +  ++SW AM+ GY+++G  
Sbjct: 286 HGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQP 345

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E +  F+++      +PD VT++ VLS C+H G+ D+GL +FH I D K G E   +HY
Sbjct: 346 DEALHCFDMLLSSG-FRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKD-KYGIEHTADHY 403

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            CV+D+L R+G    A + I  MP +P   +  SLLG CR+H NV +  +  + L EIEP
Sbjct: 404 ACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEP 463

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           EN   YV L+N+YAS G +++V  +R  M+ + +TK P  SWIE+   +H F   D+SHP
Sbjct: 464 ENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHP 523

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
             EE+ A +K+L VK +E GYV D   VL+DV++EQK++ +  HSE+LA+ FG+I TP+G
Sbjct: 524 QAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKG 583

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +PI+V KNLRIC DCH   K +SK+  R++ +RD NRFHH   G+CSC DYW
Sbjct: 584 SPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 2/265 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H H+++        + + L   Y K   L DAR +FD M  R+VVSWTAM+  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E   LF+RM+RS   PNEFT+A VL +CA     +LGKQ+H  + KS      + 
Sbjct: 241 AGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFA 300

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           GS+L+ MY+K G +  A  VF  +P+ D+VS TA+ISGYAQ G  +EA+  F  L   G 
Sbjct: 301 GSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGF 360

Query: 257 ISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
             ++VT+  VL+A +    +  G  + HS   ++ I         +ID+ S+ G    + 
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 316 RVFDNMSER-TVISWNAMLVGYSKH 339
            + + M  +     W ++L G   H
Sbjct: 421 DMINTMPVKPNKFLWASLLGGCRIH 445



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 38/255 (14%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+  +  + M   G+      Y  +L AC    + + G++VH  M K+      +  + 
Sbjct: 244 DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSA 303

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y+K   +  A ++F  M + ++VSWTAMIS Y+Q     EAL+ F  +L S   P+
Sbjct: 304 LVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPD 363

Query: 159 EFTFATVLTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAG--------- 208
             TF  VL++CA A   + G  I HS+  K   E      + ++D+ +++G         
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMI 423

Query: 209 -------------------RIHE--------ARGVFECLPERDVVSCTAIISGYAQLGLD 241
                              RIH+        A  +FE  PE      T + + YA +GL 
Sbjct: 424 NTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVT-LANIYASVGLF 482

Query: 242 EEAIELFRKLQVEGM 256
           +E   + R +++ G+
Sbjct: 483 DEVENMRRTMELRGI 497


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 341/562 (60%), Gaps = 14/562 (2%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           RG  +V   +      P ++    ++  Y     +  AR  FD+M  ++  SW  MIS +
Sbjct: 50  RGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGF 109

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI-IKSNFESH 193
           SQ     +A  LF+ M       N  ++  +++    +   +L KQ+  +  ++S     
Sbjct: 110 SQNGMMDQARELFLVM----PVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRS----- 160

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           +   ++++  + K G+I  A   FE +P +++V+  A+I+GY +    E  ++LF+++  
Sbjct: 161 VVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVE 220

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G   N  + +SVL   S L+AL  GKQVH  + +  +   +    SL+ MY KCG L  
Sbjct: 221 SGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLED 280

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + ++F  M ++ V++WNAM+ GY++HG G + + LF+ MR+E  +KPD +T++AVLS C+
Sbjct: 281 AWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEG-MKPDWITFVAVLSACN 339

Query: 374 HGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           H G  D G+  F+ +V  +D G E + +HY CVVD+LGR G++ EA++ IK MPF+P +A
Sbjct: 340 HAGFVDLGIEYFNSMV--RDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSA 397

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
           I G+LLGACR+H N+++ EF  + L+ ++PE+A  YV L+N+YA+  RW+ V  VR  MK
Sbjct: 398 IFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMK 457

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           +  V K PG SWIE+  ++H F + DR HP    +  K+ +L  K + AGYVPD+   L+
Sbjct: 458 DNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALH 517

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           DV EEQK+++LL HSEKLA+ +GLI  P G PIRV KNLR+C DCH+  K++S + GR +
Sbjct: 518 DVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVI 577

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD  RFHH  +G CSCGDYW
Sbjct: 578 IVRDTTRFHHFRQGECSCGDYW 599



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 6/240 (2%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C      K    M   G         ++L  C N   L+ G++VH  + K+     +   
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAG 265

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T L+  Y KC  L DA K+F  M +++VV+W AMIS Y+Q     +AL LF +M     +
Sbjct: 266 TSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMK 325

Query: 157 PNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           P+  TF  VL++C  A   +LG +  +S++     E+     + ++D+  + G++ EA  
Sbjct: 326 PDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVD 385

Query: 216 VFECLPERDVVSCTAIISG----YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           + + +P +   +    + G    +  L L E A +    L  E   + YV  A+V  A++
Sbjct: 386 LIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESA-AGYVQLANVYAAMN 444



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 33/231 (14%)

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA-QLGLDEEAIELFRK 250
           S++   + ++  + ++G ++ A  VFE +  +  V+  ++++GY+ + G  + A +LF +
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 251 LQVEGMISNYVTYASVL------------------------TALSGLAALGHGKQVHSHV 286
           +    + S  +  A  L                        T +SG +  G   Q     
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           L   + + V   N++I  Y + G L  ++++F+    R+V++W AM+ G+ K G     +
Sbjct: 123 LVMPVRNSVSW-NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGK----I 177

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           EL     EE  +K + VT+ A+++G       + GL +F  +V+   GF P
Sbjct: 178 ELAEKYFEEMPMK-NLVTWNAMIAGYIENCQAENGLKLFKRMVE--SGFRP 225



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS-KHGMGREVVELFNL 351
           S V+  N +I  + + G L  + RVF++M+ +T ++WN+ML GYS + G  +   +LF+ 
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           + E     PD  +Y  +L+ C     +     +F + +  KD        +  ++    +
Sbjct: 63  IPE-----PDIFSYNIMLA-CYLHNADVESARLFFDQMPVKD-----TASWNTMISGFSQ 111

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF-VGQRLMEIEP 462
            G + +A E    MP   + +    + G       V+ G+  + ++L E+ P
Sbjct: 112 NGMMDQARELFLVMPVRNSVSWNAMISGY------VESGDLDLAKQLFEVAP 157


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/491 (42%), Positives = 315/491 (64%), Gaps = 4/491 (0%)

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           ++ RML     PN+FT+  ++ +C   +  E GKQIH+ ++K  F +  +  ++L+ MY 
Sbjct: 81  MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYV 140

Query: 206 KAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
               + +AR VF+ +P+RD   VS  A+I+ Y Q     EA  LF ++++E ++ +    
Sbjct: 141 NFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 200

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           AS+L+A +GL AL  GK +H ++ +  I     L  ++IDMY KCG L  +  VF+ + +
Sbjct: 201 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 260

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + + SWN M+ G + HG G   +ELF  M  E  V PD +T++ VLS C+H G+ + G  
Sbjct: 261 KGISSWNCMIGGLAMHGKGEAAIELFKEMERE-MVAPDGITFVNVLSACAHSGLVEEGKH 319

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            F  + +   G +P +EH+GC+VD+LGRAG + EA + I  MP  P A +LG+L+GACR+
Sbjct: 320 YFQYMTEVL-GLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 378

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H N ++GE +G++++E+EP N+G YV+L+NLYASAGRWEDV +VR+LM ++ V K PG S
Sbjct: 379 HGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 438

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
            IE +  +  F A  R+HP  +E+ AK+ ++    +  GYVPD   VL+D+DEE+KE  L
Sbjct: 439 MIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPL 498

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ FGL+ T  G  +R+ KNLRIC DCH  +K +SKVY R++ +RD+NRFHH 
Sbjct: 499 YYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 558

Query: 624 VEGTCSCGDYW 634
             G CSC DYW
Sbjct: 559 RMGGCSCKDYW 569



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 156/301 (51%), Gaps = 15/301 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           Y  L+ AC     +  G+++HAH++K  +    +    LI  Y   + L  AR++FD M 
Sbjct: 97  YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 156

Query: 120 -RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
            R+RN VSW AMI+AY Q     EA  LF RM   +   ++F  A++L++C G    E G
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 216

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K IH  I KS  E    + ++++DMY K G + +A  VF  LP++ + S   +I G A  
Sbjct: 217 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 276

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGLAALG-HGKQVHSHVLRFEIPSYV 295
           G  E AIELF++++ E +  + +T+ +VL+A   SGL   G H  Q  + VL  + P   
Sbjct: 277 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK-PGME 335

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-HG-------MGREVVE 347
                ++D+  + G L  +R++ + M           LVG  + HG       +G++V+E
Sbjct: 336 HF-GCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 394

Query: 348 L 348
           L
Sbjct: 395 L 395



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 40/315 (12%)

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           R +  C    SGY +  L    I ++ ++  + +  N  TY  ++ A     A+  GKQ+
Sbjct: 57  RVIKFCAISKSGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQI 116

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHG 340
           H+HVL+F   +     N+LI MY    SL  +RRVFDNM +  R  +SWNAM+  Y +  
Sbjct: 117 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSN 176

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRGLAVFHE-- 387
              E   LF+ MR EN V  D     ++LS C+           HG +E  G+ +  +  
Sbjct: 177 RLHEAFALFDRMRLENVVL-DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLA 235

Query: 388 --IVD--CKDGF------------EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE--- 428
             ++D  CK G             +  I  + C++  L   G+   A+E  K M  E   
Sbjct: 236 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 295

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG--NYVILSNLYASAGRWEDVTR 486
           P      ++L AC     V+ G+   Q + E+     G  ++  + +L   AG  E+   
Sbjct: 296 PDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEE--- 352

Query: 487 VRELMKEKAVTKDPG 501
            R+L+ E  V  D G
Sbjct: 353 ARKLINEMPVNPDAG 367


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 319/526 (60%), Gaps = 2/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR++FD+M  RNV +W AM++  +      ++L  F+ M R    P+EF   +V   
Sbjct: 124 LGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRC 183

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H+ +++S  +S + VG+SL  MY + G + E   V   LP   +VS 
Sbjct: 184 CAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSF 243

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
              I+G  Q G  E A+E F  ++   +  + VT+ S ++  S LAAL  G+QVH+ V++
Sbjct: 244 NTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIK 303

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V +  SL+ MYS+CG L  S RV+D      +   +AM+     HG G + VEL
Sbjct: 304 AGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVEL 363

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M      +P+ VT+LA+L  CSH G++D GL  F E++    GF+P ++HY C+VD+
Sbjct: 364 FKQMMN-GGAEPNEVTFLALLYACSHSGLKDEGLEFF-ELMTKTYGFQPSVKHYNCIVDL 421

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I +MP      I  +LL AC+   N D+ E + +R++E +P ++  Y
Sbjct: 422 LGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPY 481

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+ A++ RW DVT VR++M+EK + K+PG SW+E    +H F   D+SHP + E+ 
Sbjct: 482 VLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEID 541

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +K++  K ++ GY PDM+ V +D+++E+KE  L  HSEKLA+ F  +  PEG PIRV+
Sbjct: 542 EYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVM 601

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S+V GR++ +RD +RFHH  +G CSCGDYW
Sbjct: 602 KNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 146/288 (50%), Gaps = 10/288 (3%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES-HIYVGSSLLDMYAKAGRIHEARGV 216
           + FT   +L + A        + +   I K N  S +I +G  +     K G +  AR +
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCI-----KNGDLGSAREL 130

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +P R+V +  A+++G   +GLDE++++ F  ++ EGM  +     SV    +GL  +
Sbjct: 131 FDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDV 190

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+QVH++V+R  + S + + NSL  MY +CG L     V   +   T++S+N  + G 
Sbjct: 191 VSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGR 250

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           +++G     +E F++MR   +V PD VT+++ +S CS      +G  V  +++  K G +
Sbjct: 251 TQNGDSEGALEYFSMMRGV-EVAPDVVTFVSAISCCSDLAALAQGQQVHAQVI--KAGVD 307

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
             +     +V M  R G +G++ E + +        +L +++ AC  H
Sbjct: 308 KVVPVITSLVHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMISACGFH 354



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 128/273 (46%), Gaps = 2/273 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++   C     +  G++VHA+++++     + +   L   Y +C CL++   +   +   
Sbjct: 179 SVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSL 238

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            +VS+   I+  +Q   S  AL  F  M   +  P+  TF + ++ C+       G+Q+H
Sbjct: 239 TIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVH 298

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +IK+  +  + V +SL+ MY++ G + ++  V++     D+   +A+IS     G   
Sbjct: 299 AQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGH 358

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSL 301
           +A+ELF+++   G   N VT+ ++L A S       G +    + + +     V   N +
Sbjct: 359 KAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCI 418

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTV-ISWNAML 333
           +D+  + G L  +  +  +M  R   + W  +L
Sbjct: 419 VDLLGRSGCLDEAEALILSMPVRADGVIWKTLL 451


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/593 (38%), Positives = 357/593 (60%), Gaps = 7/593 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNA---CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
           L +M   G +++ +E  T+LNA   C ++  L   + +H + +K  +     +    +  
Sbjct: 381 LRQMLAGGEDVKADEV-TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 439

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y KC  LS A+++F  +R + V SW A+I  ++Q      +L+  ++M  S   P+ FT 
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            ++L++C+      LGK++H  II++  E  ++V  S+L +Y   G +   + +F+ + +
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           + +VS   +I+GY Q G  + A+ +FR++ + G+    ++   V  A S L +L  G++ 
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H++ L+  +     +  SLIDMY+K GS+T S +VF+ + E++  SWNAM++GY  HG+ 
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           +E ++LF  M+      PD +T+L VL+ C+H G+   GL    ++     G +P ++HY
Sbjct: 680 KEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQM-KSSFGLKPNLKHY 737

Query: 403 GCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
            CV+DMLGRAG++ +AL  + + M  E    I  SLL +CR+H N+++GE V  +L E+E
Sbjct: 738 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 797

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PE   NYV+LSNLYA  G+WEDV +VR+ M E ++ KD G SWIEL++ + +F   +R  
Sbjct: 798 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 857

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
              EE+ +    L +K  + GY PD   V +D+ EE+K + L GHSEKLALT+GLI T E
Sbjct: 858 DGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSE 917

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G  IRV KNLRICVDCHN AK +SKV  R++ +RD  RFHH   G CSCGDYW
Sbjct: 918 GTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 172/326 (52%), Gaps = 13/326 (3%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMI-KTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           E    LL A   ++ +  G+++H  +   T  R    L TR+I  Y  C    D+R +FD
Sbjct: 85  EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFD 144

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFE 176
            +R +N+  W A+IS+YS+     E L  FI M+ + D  P+ FT+  V+ +CAG     
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVG 204

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +G  +H L++K+     ++VG++L+  Y   G + +A  +F+ +PER++VS  ++I  ++
Sbjct: 205 IGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264

Query: 237 QLGLDEEAIELFRKLQVE----GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
             G  EE+  L  ++  E      + +  T  +VL   +    +G GK VH   ++  + 
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD 324

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             +VL N+L+DMYSKCG +T ++ +F   + + V+SWN M+ G+S  G   +    F+++
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVL 381

Query: 353 RE----ENKVKPDSVTYLAVLSGCSH 374
           R+       VK D VT L  +  C H
Sbjct: 382 RQMLAGGEDVKADEVTILNAVPVCFH 407



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   +I MY+ CGS   SR VFD +  + +  WNA++  YS++ +  EV+E F  M   
Sbjct: 121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             + PD  TY  V+  C+  GM D G+ +    +  K G   ++     +V   G  G V
Sbjct: 181 TDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238

Query: 416 GEALEFIKNMP 426
            +AL+    MP
Sbjct: 239 TDALQLFDIMP 249


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/593 (38%), Positives = 357/593 (60%), Gaps = 7/593 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNA---CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
           L +M   G +++ +E  T+LNA   C ++  L   + +H + +K  +     +    +  
Sbjct: 131 LRQMLAGGEDVKADEV-TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 189

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y KC  LS A+++F  +R + V SW A+I  ++Q      +L+  ++M  S   P+ FT 
Sbjct: 190 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 249

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            ++L++C+      LGK++H  II++  E  ++V  S+L +Y   G +   + +F+ + +
Sbjct: 250 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 309

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           + +VS   +I+GY Q G  + A+ +FR++ + G+    ++   V  A S L +L  G++ 
Sbjct: 310 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 369

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H++ L+  +     +  SLIDMY+K GS+T S +VF+ + E++  SWNAM++GY  HG+ 
Sbjct: 370 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 429

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           +E ++LF  M+      PD +T+L VL+ C+H G+   GL    ++     G +P ++HY
Sbjct: 430 KEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQM-KSSFGLKPNLKHY 487

Query: 403 GCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
            CV+DMLGRAG++ +AL  + + M  E    I  SLL +CR+H N+++GE V  +L E+E
Sbjct: 488 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 547

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PE   NYV+LSNLYA  G+WEDV +VR+ M E ++ KD G SWIEL++ + +F   +R  
Sbjct: 548 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 607

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
              EE+ +    L +K  + GY PD   V +D+ EE+K + L GHSEKLALT+GLI T E
Sbjct: 608 DGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSE 667

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G  IRV KNLRICVDCHN AK +SKV  R++ +RD  RFHH   G CSCGDYW
Sbjct: 668 GTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 185/385 (48%), Gaps = 17/385 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L  C  +R +  G+ VH   +K      + L   L+  Y+KC C+++A+ +F     +
Sbjct: 47  TVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 106

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRS--DTEPNEFTFATVLTSCAGAFGFELGKQ 180
           NVVSW  M+  +S +  +    ++  +ML    D + +E T    +  C         K+
Sbjct: 107 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 166

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K  F  +  V ++ +  YAK G +  A+ VF  +  + V S  A+I G+AQ   
Sbjct: 167 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 226

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +++   ++++ G++ +  T  S+L+A S L +L  GK+VH  ++R  +   + +  S
Sbjct: 227 PRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLS 286

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++ +Y  CG L   + +FD M +++++SWN ++ GY ++G     + +F  M     ++ 
Sbjct: 287 VLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG-IQL 345

Query: 361 DSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDMLGRAGR 414
             ++ + V   CS       G E    A+ H + D  D F        C ++DM  + G 
Sbjct: 346 CGISMMPVFGACSLLPSLRLGREAHAYALKHLLED--DAF------IACSLIDMYAKNGS 397

Query: 415 VGEALEFIKNMPFEPTAAILGSLLG 439
           + ++ +    +  + TA+    ++G
Sbjct: 398 ITQSSKVFNGLKEKSTASWNAMIMG 422



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 137/258 (53%), Gaps = 7/258 (2%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE----PNEFTFATVLTSCAGAFGFEL 177
           RN VSW +MI  +S    S E+  L   M+  + +    P+  T  TVL  CA      L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GK +H   +K   +  + + ++L+DMY+K G I  A+ +F+    ++VVS   ++ G++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 238 LGLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            G      ++ R++   G  + ++ VT  + +      + L   K++H + L+ E     
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           ++ N+ +  Y+KCGSL+Y++RVF  +  +TV SWNA++ G+++    R  ++  +L  + 
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA-HLQMKI 239

Query: 356 NKVKPDSVTYLAVLSGCS 373
           + + PDS T  ++LS CS
Sbjct: 240 SGLLPDSFTVCSLLSACS 257



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE----GMISNYVTYASVLTALSGLAALGH 278
           R+ VS  ++I  ++  G  EE+  L  ++  E      + +  T  +VL   +    +G 
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GK VH   ++  +   +VL N+L+DMYSKCG +T ++ +F   + + V+SWN M+ G+S 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 339 HGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSGCSH 374
            G   +    F+++R+       VK D VT L  +  C H
Sbjct: 121 EG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/528 (39%), Positives = 338/528 (64%), Gaps = 3/528 (0%)

Query: 109 LSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
           +S A K+F ++ +  NV  W  +I  Y++  +S  A++L+  M  S   EP+  T+  +L
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +        LG+ IHS++I+S F S IYV +SLL +YA  G +  A  VF+ +PE+D+V
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +  ++I+G+A+ G  EEA+ L+ ++ ++G+  +  T  S+L+A + + AL  GK+ H ++
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM 248

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  +   +   N L+D+Y++CG +  ++ +FD M ++  +SW +++VG + +G+G+E +
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAI 308

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           ELF  M  +  + P  +T++ +L  CSH GM   G   F  + + +   EP IEH+GC+V
Sbjct: 309 ELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE-EYKIEPRIEHFGCMV 367

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+L RAG+V +A E+I  MP +P   I  +LLGAC VH + D+ E    +++++EP ++G
Sbjct: 368 DLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSG 427

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
           +YV+LSN+YAS  RW DV ++R+ M    V K PG S +E+   +H F   D+SHP  + 
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDM 487

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+K+++ + +  GYVP +S V  DV+EE+KE  L+ HSEK+A+ F LI TPE  PIR
Sbjct: 488 IYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIR 547

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V+KNL++C DCH   K VSKVY R++ +RD++RFHH   G+CSC DYW
Sbjct: 548 VVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 164/305 (53%), Gaps = 11/305 (3%)

Query: 47  IEMATLGLEMR---FEEYDT-----LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +   +L  EMR   F E DT     LL A      +R G+ +H+ +I++ +   +Y++  
Sbjct: 102 VSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNS 161

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y  C  ++ A K+FD+M E+++V+W ++I+ +++     EAL L+  M     +P+
Sbjct: 162 LLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPD 221

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            FT  ++L++CA      LGK+ H  +IK     +++  + LLD+YA+ GR+ EA+ +F+
Sbjct: 222 GFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFD 281

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALG 277
            + +++ VS T++I G A  GL +EAIELF+ ++  EG++   +T+  +L A S    + 
Sbjct: 282 EMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVK 341

Query: 278 HGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVG 335
            G +    +   ++I   +     ++D+ ++ G +  +      M  +  V+ W  +L  
Sbjct: 342 EGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGA 401

Query: 336 YSKHG 340
            + HG
Sbjct: 402 CTVHG 406


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 363/607 (59%), Gaps = 15/607 (2%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   ++L+   +M   G++     + T L AC     L  G+++H   +KT +     +
Sbjct: 51  NGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVV 110

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              +I  Y+KC  +++A  MF+ M  RN++SW AMI+ Y+      +AL LF +M     
Sbjct: 111 GNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGG 170

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIHEA 213
             +EFTF + L +C+     + G QIH+ +I   F    +  V  +L+D+Y K G++  A
Sbjct: 171 FLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMA 230

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R VF  + E+ V+S TA+I GYAQ G   E++ELFR+L+   +  +    +S++   +  
Sbjct: 231 RRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADF 290

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQ--NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           A +  GKQ+H+  ++  +PS V +   NS++DMY KCG +  + R+F  M  R VISW  
Sbjct: 291 ALVQQGKQMHAFAIK--VPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTV 348

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ GY KHG+G+E + LF+ M+ ++  +PD VTYLAVL GCSH G+ ++G   F  +   
Sbjct: 349 MITGYGKHGLGKEAIRLFDEMQLDS-TEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCS- 406

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G +  +EHY C+VD+LGRAGR+ EA   + +MP E    I  +LL ACRVH ++++G+
Sbjct: 407 YHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGK 466

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            VG  L+ ++ EN  NYV++SN+YA AG W++  R+REL+K K + K+ GRSW+E+D+ +
Sbjct: 467 EVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEV 526

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           H F+  D +HP+ E++   +K++  + KE  GYV  +   L+DV+EE K   L  HSEKL
Sbjct: 527 HFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKL 586

Query: 571 ALTFGLI--GTPEGAP-IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           A+   L+  G  EG   IRV KNLR+C DCH F K +SK+      +RD NRFH   +G 
Sbjct: 587 AIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGL 646

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 647 CSCRDYW 653



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 193/334 (57%), Gaps = 5/334 (1%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L   LIV Y KC  L  A  +FD M +RNVVSWTA++  + Q  +  E+L LF +M  S 
Sbjct: 9   LSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSG 68

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            +PN+FTF+T L +C    G ++G+QIH + +K+ F+    VG+S++DMY+K GRI+EA 
Sbjct: 69  VKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAA 128

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +FE +P R+++S  A+I+GY   G  E+A+ LF+K+Q  G   +  T+ S L A S L 
Sbjct: 129 CMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLG 188

Query: 275 ALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           A+  G Q+H+ ++   F       +  +LID+Y KCG L  +RRVF ++ E+ VISW A+
Sbjct: 189 AIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTAL 248

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           ++GY++ G   E +ELF  +R E+ ++ D     +++   +   +  +G  +    +   
Sbjct: 249 ILGYAQEGNLAESMELFRQLR-ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVP 307

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G +  + +   ++DM  + G + EA      MP
Sbjct: 308 SGVDISVCN--SILDMYLKCGMINEAERLFSEMP 339



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 5/250 (2%)

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F   + + + L+ MY K GR+  A  VF+ + +R+VVS TA++ G+ Q G   E++ LF 
Sbjct: 3   FGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFS 62

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           K+ + G+  N  T+++ L A   L  L  G+Q+H   ++       V+ NS+IDMYSKCG
Sbjct: 63  KMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCG 122

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +  +F+ M  R +ISWNAM+ GY+  G   + + LF  M+E      D  T+ + L
Sbjct: 123 RINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGF-LDEFTFTSTL 181

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP--- 426
             CS  G    G  +   ++     +       G ++D+  + G++  A     ++    
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 427 -FEPTAAILG 435
               TA ILG
Sbjct: 242 VISWTALILG 251


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 330/543 (60%), Gaps = 26/543 (4%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC  L  AR++FDEM  RNVVSWTA+IS Y+Q   S+E  +LF  ML  D  PNEF 
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDML-VDCYPNEFA 59

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA------GRIHEARG 215
           FA+V+ SC     +  GKQ+H+L +K    + +YVG++L+  Y+K+      G   EA  
Sbjct: 60  FASVIISC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACR 115

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VFE +  R++VS  ++I+       +EEA+ LFR+L  EG+  ++ T++ VL A +G   
Sbjct: 116 VFESMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVT 169

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
             H   V+S V++       VL N+LI  Y++CGS+++S++VFD M  R V+SWN+M+  
Sbjct: 170 ERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKA 229

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y+ HG  +E + LF+    E  V+PDS T +A+LS CSH G+ + G+ +F + +    G 
Sbjct: 230 YALHGQAKEALHLFS----EMNVRPDSATMVALLSACSHAGLVEEGINIF-DSMSMNHGV 284

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P+++HY C+VD+LGRAG + EA E I  MP +P + +  +LL +CR +    + +    
Sbjct: 285 SPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAAD 344

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           +L E+EP N+  YV +SN+Y S G + +   +R+ M    V K+PG SWIE++  +H F 
Sbjct: 345 KLKELEPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFA 404

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           +  R HP RE + AK+  L  + K  GYVP+ S  L D++EE K++ L  HSEKLAL F 
Sbjct: 405 SGGRRHPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFA 464

Query: 576 LIGTPE----GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           L+        G  IR++KN+RICVDCHNF K  S +  +++ +RD NRFHH     CSC 
Sbjct: 465 LMSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCN 524

Query: 632 DYW 634
           DYW
Sbjct: 525 DYW 527



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNK-CE-----CLSDARKMFDEMRERNVVSWTAM 130
           G++VHA  +K      VY+   LI  Y+K CE       S+A ++F+ M  RN+VSW +M
Sbjct: 72  GKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSM 131

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I+A        EAL LF ++ R    P+  TF+ VL +CAG         ++S ++K+ F
Sbjct: 132 IAAEE------EALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGF 185

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           E    + ++L+  YA+ G I  ++ VF+ +  RDVVS  ++I  YA  G  +EA+ LF +
Sbjct: 186 EDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSE 245

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVH-----SHVLRFEIPSYVVLQNSLIDMY 305
           + V     +  T  ++L+A S    +  G  +      +H +  ++  Y      ++D+ 
Sbjct: 246 MNVR---PDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYAC----MVDIL 298

Query: 306 SKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENK-VKP-DS 362
            + G L  +  +   M  +   + W+A+L    K+G      +L  L  ++ K ++P +S
Sbjct: 299 GRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGE----TQLAKLAADKLKELEPGNS 354

Query: 363 VTYLAVLS-GCSHGGMEDRGL 382
           + Y+ + +  CS G   + GL
Sbjct: 355 LGYVQISNIYCSGGSYNEAGL 375



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 8/205 (3%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL   +  +  +L AC    T R    V++ ++K  +     L   LI  Y +C  +S +
Sbjct: 149 GLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFS 208

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           +++FD+MR R+VVSW +MI AY+    + EAL+LF  M   +  P+  T   +L++C+ A
Sbjct: 209 KQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEM---NVRPDSATMVALLSACSHA 265

Query: 173 FGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTA 230
              E G  I  S+ +       +   + ++D+  +AG + EA  +   +P + D V  +A
Sbjct: 266 GLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSA 325

Query: 231 IISG---YAQLGLDEEAIELFRKLQ 252
           ++S    Y +  L + A +  ++L+
Sbjct: 326 LLSSCRKYGETQLAKLAADKLKELE 350


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 356/611 (58%), Gaps = 39/611 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +++       L  G+++HA ++   +   + + T LI  Y KC    +AR++FD+M+
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMK 269

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R++VSW  MI  Y Q     EAL L+ ++     +  + TF ++L +C+       G+ 
Sbjct: 270 KRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRL 329

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I++   +S + V ++L++MYAK G + EAR VF  +  RD V+ + +I  YA  G 
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGY 389

Query: 241 DEEA----------------------------------IELFRKLQ-VEGMISNYVTYAS 265
            ++A                                  +++FR++    G+  + VT+ +
Sbjct: 390 GKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIA 449

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL A + L  L   K +H+ +   E+ S VV+ N+LI+MY++CGSL  + R+F    E+T
Sbjct: 450 VLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT 509

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V+SW AM+  +S++G   E ++LF  M  E  VKPD VTY ++L  C+HGG  ++G   F
Sbjct: 510 VVSWTAMVAAFSQYGRYAEALDLFQEMDLEG-VKPDDVTYTSILFVCTHGGSLEQGWRYF 568

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
            ++ +   G  P  +H+  +VD+LGR+GR+ +A E +++MPFEP      + L ACR+H 
Sbjct: 569 TDMAELH-GLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHG 627

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
            +++GE   +R+ E++P +   Y+ +SN+YA+ G WE V  VR+ M+E+ + K PG S+I
Sbjct: 628 KLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFI 687

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           E+D  LH F +  + HP  +E+  ++ +L    + AGYVPD   VL+DV E +KE +LL 
Sbjct: 688 EVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLY 747

Query: 566 HSEKLALTFGLIGT-PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI- 623
           HSEK+A+ FGL+ +   G PIRV+KNLR+C DCH   KF++++ GR + LRD NRFH   
Sbjct: 748 HSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFS 807

Query: 624 VEGTCSCGDYW 634
            +G CSCGDYW
Sbjct: 808 SDGKCSCGDYW 818



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 208/417 (49%), Gaps = 43/417 (10%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG  T+AL+    M   GL      + ++L AC    +L  G+ +H  +  +       L
Sbjct: 88  NGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNRVFYSGLDSFQSL 144

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +   + DA++MF  ++ R+  SW A+I A+SQ      AL +F  M + D 
Sbjct: 145 ANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDM 203

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +PN  T+  V++  +       G++IH+ I+ + F+S + V ++L++MY K G  HEAR 
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEARE 263

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ + +RD+VS   +I  Y Q G   EA+EL++KL +EG      T+ S+L A S + A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT----------------------- 312
           L  G+ VHSH+L   + S V +  +L++MY+KCGSL                        
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 313 -----------YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
                       +R+VFD +  R  I WNAM+  Y ++G     +++F  M     +KPD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +VT++AVL  C+  G      A+  +I + +   E  +     +++M  R G + EA
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESE--LESNVVVTNTLINMYARCGSLEEA 498



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 204/380 (53%), Gaps = 10/380 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--R 120
           T+L +C +   +  G+ +H  +  + +     +   LI  Y KC+ L DAR +F+ M  R
Sbjct: 12  TVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWR 71

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RNVVSW AMI+AY+Q  HS EAL L+ RM       +  TF +VL +C+       G++
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGRE 128

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ +  S  +S   + ++L+ MYA+ G + +A+ +F+ L  RD  S  A+I  ++Q G 
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGD 188

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              A+ +F++++ + M  N  TY +V++  S    L  G+++H+ ++     S +V+  +
Sbjct: 189 WSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATA 247

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI+MY KCGS   +R VFD M +R ++SWN M+  Y ++G   E +EL+  +  E   K 
Sbjct: 248 LINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG-FKR 306

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
              T++++L  CS      +G  V   I++   G + E+     +V+M  + G + EA +
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILE--RGLDSEVAVATALVNMYAKCGSLEEARK 364

Query: 421 FIKNMPFEPTAAILGSLLGA 440
               M      A   +L+GA
Sbjct: 365 VFNAMKNRDAVA-WSTLIGA 383



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 191/379 (50%), Gaps = 46/379 (12%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           D +P+  TF TVL SC+       G+ +H  I  S FE    VG++L+ MY K   + +A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 214 RGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           R VFE +   +R+VVS  A+I+ YAQ G   EA+ L+ ++ ++G+ +++VT+ SVL A S
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA    G+++H+ V    + S+  L N+L+ MY++ GS+  ++R+F ++  R   SWNA
Sbjct: 122 SLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +++ +S+ G     + +F  M+ +  +KP+S TY+ V+SG S   +   G  +  EIV  
Sbjct: 179 VILAHSQSGDWSGALRIFKEMKCD--MKPNSTTYINVISGFSTPEVLPEGRKIHAEIV-- 234

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP------------------------- 426
            +GF+ ++     +++M G+ G   EA E    M                          
Sbjct: 235 ANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALE 294

Query: 427 ---------FEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLY 475
                    F+ T A   S+LGAC     +  G  V   ++E  ++ E A     L N+Y
Sbjct: 295 LYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA-VATALVNMY 353

Query: 476 ASAGRWEDVTRVRELMKEK 494
           A  G  E+  +V   MK +
Sbjct: 354 AKCGSLEEARKVFNAMKNR 372



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 30/236 (12%)

Query: 35  TLCSNGQLT------------KALIEM-ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           T+C N  +T            K   EM    GL+     +  +L AC +   L   + +H
Sbjct: 408 TICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALH 467

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
           A + ++     V +   LI  Y +C  L +A ++F   +E+ VVSWTAM++A+SQ     
Sbjct: 468 AQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-------KQIHSLIIKSNFESHI 194
           EAL+LF  M     +P++ T+ ++L  C      E G        ++H L   ++   H 
Sbjct: 528 EALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD---HF 584

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIE 246
              ++++D+  ++GR+ +A+ + E +P E D V+    ++    + +L L E A E
Sbjct: 585 ---AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/604 (36%), Positives = 360/604 (59%), Gaps = 19/604 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI------- 100
            M +L +      + +LL A    +  +    +HA  ++      +Y+   LI       
Sbjct: 100 SMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFH 159

Query: 101 -------VFYNKCECLSD-ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                  VF  + E   D  +K+FD M  R+VVSW  +I+ ++Q     EAL++   M +
Sbjct: 160 NAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGK 219

Query: 153 S-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           +   +P+ FT +++L   A       GK+IH   +++ F+  +++GSSL+DMYAK  R+ 
Sbjct: 220 NGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLE 279

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            +   F  LP +D +S  +II+G  Q G  +  +  FR++  E +    V+++SV+ A +
Sbjct: 280 CSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACA 339

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL  G+Q+H  ++R        + +SL+DMY+KCG++  +R VFD + +R +++W A
Sbjct: 340 HLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTA 399

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +++G + HG   + V LF  M E+  V+P  V ++AVL+ CSH G+ D G   F+ + + 
Sbjct: 400 IIMGCAMHGHALDAVSLFENMLEDG-VRPCYVAFMAVLTACSHAGLVDEGWRYFNSM-ER 457

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIG 450
             G  P +EHY  V D+LGRAGR+ EA +FI NM   +PT ++   LL ACR H +V++ 
Sbjct: 458 DFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELA 517

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E V  +L+ ++ EN G YV++SN+Y++A RW+D  R+R  M++K + K P  SWIE+   
Sbjct: 518 EKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQ 577

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +HTF A D+SHP  ++++  +  L  + ++ GYV D + VL+DVDEE K ++L  HSE+L
Sbjct: 578 VHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERL 637

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +G+I T  G  IRVIKN+R+C DCH   KF++K+ GR++++RD +RFHH   G+CSC
Sbjct: 638 AIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSC 697

Query: 631 GDYW 634
           GDYW
Sbjct: 698 GDYW 701



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 164/335 (48%), Gaps = 20/335 (5%)

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           +W+++I  Y+  +    + + F  M      PN   F ++L +       +L   +H+  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 186 IKSNFESHIYVGSSLLDMYAK---AGRIHEA---RG---------VFECLPERDVVSCTA 230
           ++   +S +Y+ ++L++ YAK   AG++ +    RG         VF+ +P RDVVS   
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           +I+G+AQ G+  EA+++ R++   G +  +  T +S+L   +    +  GK++H + +R 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                V + +SLIDMY+KC  L  S R F  +  +  ISWN+++ G  ++G     +  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M +EN VKP +V++ +V+  C+H      G  +   IV  + GF+        +VDM 
Sbjct: 317 RRMLKEN-VKPMAVSFSSVIPACAHLTALSLGRQLHGCIV--RLGFDDNEFIASSLVDMY 373

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            + G +  A      +      A    ++G C +H
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAIIMG-CAMH 407


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/661 (37%), Positives = 360/661 (54%), Gaps = 61/661 (9%)

Query: 25  SFPPNPQNLKTL---CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           SFPP+P  L T    C    L +AL  +A +    R    D  + + +    LR G   +
Sbjct: 15  SFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLAR----DPFVASSLLHAYLRLGTTGN 70

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR-------KMFDEMR-----ERNVVSWTA 129
           A  +      P     R +V ++       AR       ++ +EMR     E NV++W  
Sbjct: 71  ARALFDGMPRP----QRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNG 126

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKS 188
           ++S  ++   + +A+     M        + T  +   S  G  G   +G+Q+H   +K+
Sbjct: 127 LVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKA 186

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA------------ 236
              +   V ++L+DMY K G+  E   VF+     DV SC A+I+G +            
Sbjct: 187 GCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLF 246

Query: 237 -----------------------QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
                                  Q G D EA+E FR++Q +G   N VT   VL A + +
Sbjct: 247 KEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANV 306

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           AAL HG+  H   LR      V + ++L+DMY+KCG +  +R +FD M  R V+SWNAM+
Sbjct: 307 AALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMI 366

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY+ +G     V +F+ M +  K KPD VT+  +L+ C+  G+ + G   F E+ + + 
Sbjct: 367 GGYAMYGEAVNAVWMFHSMLK-CKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHN-EY 424

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G  P +EHY C+V +LGRAG++ EA + I +MPFEP A I GSLLG+CRVH NVD+ E  
Sbjct: 425 GVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVA 484

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++L  +EPENAGNYV+LSN+YAS   W+ V RVRE+MK+  + K+ G SWIE+   +H 
Sbjct: 485 AEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHM 544

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
             A D SHPM   +  K+ QL+++ ++ G+VP    VL+DV+E++K+ +L  HSEKLA+ 
Sbjct: 545 LLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVA 604

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
            GLI T  G  +RVIKNLRIC DCH   KF+S   GR++S+RD NRFHH   G CSCGD+
Sbjct: 605 LGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDF 664

Query: 634 W 634
           W
Sbjct: 665 W 665


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/630 (37%), Positives = 355/630 (56%), Gaps = 42/630 (6%)

Query: 33  LKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAH-MIKTC 88
           + +L  N +  +AL+ +  +   G+        ++L AC +   L  G+ +HA  ++   
Sbjct: 259 ISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                ++   L+  Y  C+     R +FD M  R +  W AMI+ Y +    +EA+ LF+
Sbjct: 319 LIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFV 378

Query: 149 RML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            M+      PN  T ++VL +C     F   + IHS ++K  FE   YV ++L+DMY++ 
Sbjct: 379 EMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRM 438

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ---VEGMIS------ 258
           GRI  AR +F  +  +D+VS   +I+GY   G  ++A+ L   +Q    E  I+      
Sbjct: 439 GRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYE 498

Query: 259 ---------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
                    N VT  +VL   + LAALG GK++H++ ++  +   V + ++L+DMY+KCG
Sbjct: 499 DNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCG 558

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN----KVKPDSVTY 365
            L  SR VF+ MS R VI+WN +++ Y  HG G E ++LF  M EE     +++P+ VTY
Sbjct: 559 CLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTY 618

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           +A+ +  SH GM D GL +F+ +   K G EP  +HY C+VD+LGR+G++ EA   IK M
Sbjct: 619 IAIFASLSHSGMVDEGLNLFYTM-KAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTM 677

Query: 426 PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           P          SLLGAC++H N++IGE   + L  ++P    N +      +  GR    
Sbjct: 678 PSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP----NVLDYGTKQSMLGR---- 729

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
                 MKEK V K+PG SWIE    +H F A D SHP  +E+   ++ LS++ K+ GYV
Sbjct: 730 -----KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYV 784

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD SCVL++V EE+KE +L GHSE+LA+ FGL+ T  G  IRV KNLR+C DCH   KF+
Sbjct: 785 PDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFI 844

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SK+  R++ LRD  RFHH   GTCSCGDYW
Sbjct: 845 SKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 199/389 (51%), Gaps = 9/389 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q       M T G+      +  +L A    + L  G+++HAH+ K     P  +   L+
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  +  AR++FDE+  R+ VSW +MI+A  +      A++LF  ML  +  P  F
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 161 TFATVLTSCAGAF-GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           T  +V  +C+    G  LGKQ+H+ +++ N +   +  ++L+ MYAK GR++EA+ +F+ 
Sbjct: 188 TLVSVAHACSNLINGLLLGKQVHAFVLR-NGDWRTFTNNALVTMYAKLGRVYEAKTLFDV 246

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
             ++D+VS   IIS  +Q    EEA+     +   G+  N VT ASVL A S L  LG G
Sbjct: 247 FDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCG 306

Query: 280 KQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           K++H+ VL   ++     +  +L+DMY  C      R VFD M  RT+  WNAM+ GY +
Sbjct: 307 KEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVR 366

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGC--SHGGMEDRGLAVFHEIVDCKDGFE 396
           +    E +ELF  M  E  + P+SVT  +VL  C      ++  G+   H  V  K GFE
Sbjct: 367 NEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGI---HSCV-VKWGFE 422

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +      ++DM  R GR+  A     +M
Sbjct: 423 KDKYVQNALMDMYSRMGRIEIARSIFGSM 451



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 165/353 (46%), Gaps = 42/353 (11%)

Query: 127 WTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           W + + + +Q + +F +A++ +  M+ +   P+ F F  VL + AG     LGKQ+H+ +
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
            K        V +SL++MY K G I  AR VF+ +  RD VS  ++I+   +    E A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
            LFR + +E +     T  SV  A S L   L  GKQVH+ VLR          N+L+ M
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLR-NGDWRTFTNNALVTM 230

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+K G +  ++ +FD   ++ ++SWN ++   S++    E +   ++M +   V+P+ VT
Sbjct: 231 YAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSG-VRPNGVT 289

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-VVDML--------GR---- 411
             +VL  CSH  M   G  +   ++   D  E      GC +VDM         GR    
Sbjct: 290 LASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSF--VGCALVDMYCNCKQPEKGRLVFD 347

Query: 412 --------------AGRVG-----EALEFIKNMPFE----PTAAILGSLLGAC 441
                         AG V      EA+E    M FE    P +  L S+L AC
Sbjct: 348 GMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 356/620 (57%), Gaps = 44/620 (7%)

Query: 15  TFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTL 74
            + Q    +  +  N ++LK +       +   EM   G+E     + ++L AC +    
Sbjct: 200 NYVQWTAMLTGYAQNGESLKAI-------QCFKEMRNQGMESNHFTFPSILTACTSISAY 252

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
             G++VH  +I + + P VY+++ L+  Y KC  L+ AR + D M   +VV W +MI   
Sbjct: 253 AFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGC 312

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
               +  EAL LF +M   D   ++FT+ +VL S A     ++G+ +HSL IK+ F++  
Sbjct: 313 VTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACK 372

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
            V ++L+DMYAK G +  A  VF  + ++DV+S T++++GY   G  E+A++LF  ++  
Sbjct: 373 TVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTA 432

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
            +  +    A V +A + L  +  G+QVH++ ++    S +  +NSLI MY+KCG L   
Sbjct: 433 RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCL--- 489

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
                                        + + +F+ M   N      +++ A++ G + 
Sbjct: 490 ----------------------------EDAIRVFDSMETRN-----VISWTAIIVGYAQ 516

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ + G + F E ++   G +P  +HY C++D+LGRAG++ EA   +  M  EP A I 
Sbjct: 517 NGLVETGQSYF-ESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIW 575

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            SLL ACRVH N+++GE  G+ L+++EP N+  YV+LSN+++ AGRWED   +R  MK  
Sbjct: 576 KSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTM 635

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K+PG SWIE+   +HTF + DRSHP+  E+ +K+ ++ +  KEAG+VPDM+  L D+
Sbjct: 636 GINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDM 695

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           DEE KE+ L  HSEKLA+ FGL+   +GAPIR+ KNLR+C DCH+  K++S ++ R + L
Sbjct: 696 DEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHIIL 755

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD N FHH +EG CSCGD+W
Sbjct: 756 RDLNCFHHFIEGKCSCGDFW 775



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 181/328 (55%), Gaps = 4/328 (1%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           Y    +I  Y     L +ARK+F+E   +N ++W++++S Y +     E L  F +M   
Sbjct: 69  YTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSD 128

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
             +P+++T  +VL +C+       GK IH   IK   E++I+V + L+DMY+K   + EA
Sbjct: 129 GQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEA 188

Query: 214 RGVFECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
             +F  LP+R + V  TA+++GYAQ G   +AI+ F++++ +GM SN+ T+ S+LTA + 
Sbjct: 189 EYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTS 248

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           ++A   G+QVH  ++       V +Q++L+DMY+KCG L  +R + D M    V+ WN+M
Sbjct: 249 ISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSM 308

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +VG   HG   E + LF+ M   + ++ D  TY +VL   +       G +V    +  K
Sbjct: 309 IVGCVTHGYMEEALVLFHKMHNRD-IRIDDFTYPSVLKSLASCKNLKIGESVHSLTI--K 365

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            GF+        +VDM  + G +  AL+
Sbjct: 366 TGFDACKTVSNALVDMYAKQGNLSCALD 393



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           Y  + ++  YA  G + EAR +F   P ++ ++ ++++SGY + G + E +  F ++  +
Sbjct: 69  YTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSD 128

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G   +  T  SVL A S L+ L  GK +H + ++ ++ + + +   L+DMYSKC  L  +
Sbjct: 129 GQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEA 188

Query: 315 RRVFDNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
             +F ++ +R   + W AML GY+++G   + ++ F  MR +  ++ +  T+ ++L+ C+
Sbjct: 189 EYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQG-MESNHFTFPSILTACT 247

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                  G  V   I+    GF P +     +VDM  + G +  A   +  M  +     
Sbjct: 248 SISAYAFGRQVHGCII--WSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVC- 304

Query: 434 LGSLLGACRVH 444
             S++  C  H
Sbjct: 305 WNSMIVGCVTH 315



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N L+   SK G +  +R++FD M  R   +WN M+  Y+  G   E  +LFN    E  +
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFN----ETPI 96

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           K +S+T+ +++SG    G E  GL  F ++    DG +P     G V+
Sbjct: 97  K-NSITWSSLVSGYCKNGCEVEGLRQFSQMW--SDGQKPSQYTLGSVL 141


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 355/606 (58%), Gaps = 45/606 (7%)

Query: 72  RTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           +T R  +++HAH IKT   + P         +  +    +  ARK F ++   N  SW  
Sbjct: 26  KTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNT 85

Query: 130 MISAYSQ-------KAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQI 181
           +I A +          +S EAL  F  ML     EPN+FTF  VL +CA     E GKQ+
Sbjct: 86  IIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQL 145

Query: 182 HSLIIK--------------------------------SNFESHIYVGSSLLDMYAKAGR 209
           H  ++K                                +  E ++ + + ++D Y + G 
Sbjct: 146 HGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGD 205

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  +R +F+ +P + VVS   +ISG AQ G  +EAIE+F  +Q+  +  NYVT  SVL A
Sbjct: 206 LRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPA 265

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVIS 328
           +S L A+  GK VH    + EI    VL ++LIDMYSKCGS+  + +VF+ + +++  I+
Sbjct: 266 VSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPIT 325

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W+A++ G + HG  R+ ++ F  M++   V P  V Y+ VLS CSH G+ + G ++++ +
Sbjct: 326 WSAIIGGLAMHGRARDALDHFWRMQQAG-VTPSDVVYIGVLSACSHAGLVEEGRSIYYHM 384

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V+   G  P IEHYGC+VD+LGRAG + EA + I NMP +P   IL +LLGAC++H N++
Sbjct: 385 VNIV-GLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIE 443

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           +GE + + LM   P ++G+YV LSN++AS G WE V +VR  MKE  + KDPG SWIELD
Sbjct: 444 MGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELD 503

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            ++H F   D SHP  E + + ++++S + +  GY P+ + VL ++DE++K+  L  HSE
Sbjct: 504 GVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSE 563

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           K+A+ FGLI T    P++++KNLR+C DCH+  K VSK+Y RK+ +RD+ RFHH   G+C
Sbjct: 564 KIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSC 623

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 624 SCMDYW 629


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 342/571 (59%), Gaps = 3/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC        G+++H    K  +   V+++  L+  Y K   +S AR +FD++ +R 
Sbjct: 106 VLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 165

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWT++IS Y Q     EALN+F  M + + +P+     +V+T+         GK IH 
Sbjct: 166 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 225

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L+ K   E    +  SL  MYAK G +  AR  F  + + +++   A+ISGYA  G  EE
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 285

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           AI+LFR++  + +  + +T  S + A + + +L   + +  ++ + E      +   LID
Sbjct: 286 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 345

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+  +R VFD ++++ V+ W+ M++GY  HG G+E + L+N M++   V P+  
Sbjct: 346 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG-VCPNDG 404

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ +L+ C + G+   G  +FH + D   G EP  +HY CVVD+LGRAG + +A +FI 
Sbjct: 405 TFIGLLTACKNSGLVKEGWELFHLMPD--HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIM 462

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +MP +P  ++ G+LL AC++H  V +GE   ++L  ++P N G+YV LSNLYASA  W  
Sbjct: 463 SMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTR 522

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V  VR +M +K + KD G S IE++  L TF   DRSHP  +E+  ++ +L  + K AGY
Sbjct: 523 VANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGY 582

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VP M  VL+D++ E+ E+ L  HSE+LA+ +G+I T  G  +R+ KNLR C++CH+  K 
Sbjct: 583 VPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKL 642

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD  RFHH  +G CSCGD+W
Sbjct: 643 ISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 165/291 (56%), Gaps = 13/291 (4%)

Query: 96  RTRLIVFYNKCECLSD---ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           R  +I F N C    D   A K F E+ E +++ W A+I  Y+QK      + +++ M  
Sbjct: 34  RFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQI 93

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S   PN FTF  VL +C G     +GKQIH    K  F S+++V +SL+ MYAK G+I  
Sbjct: 94  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 153

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR VF+ L +R VVS T+IISGY Q G   EA+ +F++++   +  +++   SV+TA + 
Sbjct: 154 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 213

Query: 273 LAALGHGKQVHSHV----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           +  LG GK +H  V    L FE P  V+   SL  MY+K G +  +R  F+ M +  +I 
Sbjct: 214 VEDLGQGKSIHGLVTKLGLEFE-PDIVI---SLTTMYAKRGLVEVARFFFNRMEKPNLIL 269

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL-AVLSGCSHGGME 378
           WNAM+ GY+ +G G E ++LF  M  +N ++ DS+T   AVL+    G +E
Sbjct: 270 WNAMISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLE 319



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G ++ A   F  + E D++   AII GY Q  + +  I ++  +Q+  +  N  T+  VL
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A  G +  G GKQ+H    ++   S V +QNSL+ MY+K G ++Y+R VFD + +RTV+
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFH 386
           SW +++ GY ++G   E + +F  MR+ N VKPD +  ++V++  ++  +ED G     H
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCN-VKPDWIALVSVMT--AYTNVEDLGQGKSIH 224

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
            +V  K G E E +    +  M  + G V E   F  N   +P   +  +++
Sbjct: 225 GLV-TKLGLEFEPDIVISLTTMYAKRGLV-EVARFFFNRMEKPNLILWNAMI 274



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L H  QV+  ++   +     L    I+     G + Y+ + F  +SE  ++ WNA++ G
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y++  +    + ++  M + ++V P+  T+L VL  C    +E  G  +  +    K GF
Sbjct: 75  YTQKNIVDAPIRMYMDM-QISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF--KYGF 131

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA 418
              +     +V M  + G++  A
Sbjct: 132 GSNVFVQNSLVSMYAKFGQISYA 154


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 344/600 (57%), Gaps = 41/600 (6%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG  ++AL   + M   G E     + ++L+AC     ++ G+++H  ++ T     V++
Sbjct: 133 NGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFV 192

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L   Y KC  L  AR +FD M  +NVVSW +MIS Y Q         LF  M  S  
Sbjct: 193 WNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGL 252

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P++ T + +L++                                   Y + G I EA  
Sbjct: 253 MPDQVTISNILSA-----------------------------------YFQCGYIDEACK 277

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
            F  + E+D V  T ++ G AQ G +E+A+ LFR++ +E +  +  T +SV+++ + LA+
Sbjct: 278 TFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLAS 337

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+ VH   + F +   +++ ++L+DMYSKCG    +  VF  M  R VISWN+M++G
Sbjct: 338 LCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILG 397

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y+++G   E + L+  M  EN +KPD++T++ VLS C H G+ +RG   F+ I     G 
Sbjct: 398 YAQNGKDLEALALYEEMLHEN-LKPDNITFVGVLSACMHAGLVERGQGYFYSISKIH-GM 455

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P  +HY C++++LGRAG + +A++ IK+M FEP   I  +LL  CR++ +V+ GE   +
Sbjct: 456 NPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAAR 515

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
            L E++P NAG Y++LSN+YA+ GRW+DV  VR LMK   + K    SWIE+D  +H F 
Sbjct: 516 HLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFV 575

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           A DR+H   E++  ++ +L  K +E+G+ PD + VL+DV EE+K   +  HSEKLAL F 
Sbjct: 576 AEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFW 635

Query: 576 LIGTPEG-APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LI  P G  PIR++KN+R+C DCH F KFVSK+  R + LRD NRFHH +EG CSC D W
Sbjct: 636 LIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 206/447 (46%), Gaps = 71/447 (15%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  LL  CV    +   +R+  HM    Y+P   +L+ RL+  Y K   LSDAR +FD
Sbjct: 23  ESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFD 82

Query: 118 EMRERNVVSWTAMISAYSQKAH-------------------------------SFEALNL 146
           +M  R+V SW AM+SAYS+  +                               S +AL  
Sbjct: 83  KMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEF 142

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F+RM     E  ++T  +VL +C+     + GKQIH  I+ ++    ++V ++L +MYAK
Sbjct: 143 FVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAK 202

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G + +AR +F+ +  ++VVS  ++ISGY Q G  E   +LF ++Q  G++ + VT +++
Sbjct: 203 CGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNI 262

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L+A                                   Y +CG +  + + F  + E+  
Sbjct: 263 LSA-----------------------------------YFQCGYIDEACKTFREIKEKDK 287

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           + W  M+VG +++G   + + LF  M  EN V+PD+ T  +V+S C+      +G AV  
Sbjct: 288 VCWTTMMVGCAQNGKEEDALLLFREMLLEN-VRPDNFTISSVVSSCARLASLCQGQAVHG 346

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           + V    G + ++     +VDM  + G   +A    K M      +    +LG  +   +
Sbjct: 347 KAVIF--GVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKD 404

Query: 447 VDIGEFVGQRLME-IEPENAGNYVILS 472
           ++      + L E ++P+N     +LS
Sbjct: 405 LEALALYEEMLHENLKPDNITFVGVLS 431


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 349/591 (59%), Gaps = 37/591 (6%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EMRERNVVSWTAMISAYS 135
           ++VHA +IKT     +   TR+ +          A+++F   E ++     W + + A +
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 104

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +     +A+ LF R+ + D  P+ FT ++VL +C        G+ +H ++ K  F S++Y
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLY 164

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVV----------------------------- 226
           + + ++ +YA  G + EAR +FE +P+RDVV                             
Sbjct: 165 LQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERN 224

Query: 227 --SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
             S T++I+GY Q G  +EAI LF K++  G+  N VT  +VL A + L AL  G ++H 
Sbjct: 225 VRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHE 284

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           +  R      V + N+LIDMY KCG L  + +VF+ M ERTV+SW+AM+ G + HG   E
Sbjct: 285 YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEE 344

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYG 403
            + LF+ M +   ++P+ VT++ +L  CSH G+   G   F  +   +D G  P+IEHYG
Sbjct: 345 ALRLFSDMSQVG-IEPNGVTFIGLLHACSHMGLISEGRRFFASMT--RDYGIIPQIEHYG 401

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+L RAG + EA EFI NMP +P   + G+LLGACRVH NV++ E   + L+E++P 
Sbjct: 402 CMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL 461

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           N G YV+LSN+YA AGRWED  RVR+ MK++ V K PG S I +D ++H F A + SHP 
Sbjct: 462 NDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPD 521

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
            E++  + ++L  + +  GYVP+ S VL D++E +K K +  HSEKLAL FGL+ TP   
Sbjct: 522 TEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAET 581

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           PIR++KNLRIC DCH+  K +S +  R++ +RD+NRFH   + +CSC DYW
Sbjct: 582 PIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 47/349 (13%)

Query: 31  QNLKTLCSNGQLTKALIE----MATLGLEMRFEEYD---------TLLNACVNQRTLRGG 77
           Q  +T   N  L KAL E    +  + L  R  +YD         ++L AC+N   L  G
Sbjct: 89  QKPETFVWNSCL-KALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVS----------- 126
           + +H  + K  +R  +YL+  ++  Y  C  + +AR +F++M +R+VV+           
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQ 207

Query: 127 --------------------WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
                               WT+MI+ Y Q   + EA++LF +M  +  + NE T   VL
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +CA     +LG +IH    +  F+ ++ + ++L+DMY K G + EA  VFE + ER VV
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S +A+I G A  G  EEA+ LF  +   G+  N VT+  +L A S +  +  G++  + +
Sbjct: 328 SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASM 387

Query: 287 LR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAML 333
            R + I   +     ++D+ S+ G L  +     NM  +   + W A+L
Sbjct: 388 TRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +   L  G R+H +  +  ++  V +   LI  Y KC CL +A K+F+EM ER
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 324

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW+AMI   +    + EAL LF  M +   EPN  TF  +L +C+       G++  
Sbjct: 325 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 384

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG---YAQ 237
           + + +       I     ++D+ ++AG +HEA      +P + + V   A++     +  
Sbjct: 385 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 444

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           + + EEAI+    L+++ +   Y    S + A +G
Sbjct: 445 VEMAEEAIKHL--LELDPLNDGYYVVLSNIYAEAG 477


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 354/601 (58%), Gaps = 7/601 (1%)

Query: 36  LCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
            C NG    AL     M   G++M      ++L  C     +  G  +H H++K      
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++   LI  Y+K   L DA+ +FD+M  R++VSW ++I+AY Q      AL  F  M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIH 211
               P+  T  ++ +  +      + + I   +I+  + +  + +G++L++MYAK G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTAL 270
            A  VF+ LP +D +S   +++GY Q GL  EAI+ +  ++     I N  T+ S++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           S + AL  G ++H+ +++  +   V +   LID+Y KCG L  +  +F  +   T + WN
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++     HG G E ++LF  M  E +VK D +T++++LS CSH G+ D G   F +I+ 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAE-RVKADHITFVSLLSACSHSGLVDEGQKCF-DIMQ 554

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
            + G +P ++HYGC+VD+LGRAG + +A E ++NMP +P A+I G+LL AC+++ N ++G
Sbjct: 555 KEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
                RL+E++ EN G YV+LSN+YA+  +WE V +VR L +++ + K PG S + +   
Sbjct: 615 TLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSK 674

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
              F+  +++HP   E+  ++K LS K K  GYVPD S V  D++E++KE++L  HSE+L
Sbjct: 675 AEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERL 734

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FG+I TP  +PIR+ KNLR+C DCHN  K++S++  R++ +RD NRFHH  +G CSC
Sbjct: 735 AIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794

Query: 631 G 631
            
Sbjct: 795 A 795



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 212/388 (54%), Gaps = 9/388 (2%)

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           L   F  +  +L ACV   +L  G++VH  + K  +   V++   L+  Y++   L  A 
Sbjct: 120 LRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAH 176

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           K+F +M  ++V SW AMIS + Q  ++  AL +  RM     + +  T A++L  CA + 
Sbjct: 177 KVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSD 236

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
               G  IH  ++K   +S ++V ++L++MY+K GR+ +A+ VF+ +  RD+VS  +II+
Sbjct: 237 DVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIA 296

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IP 292
            Y Q      A+  F+ +Q+ G+  + +T  S+ +  S L+     + +   V+R E + 
Sbjct: 297 AYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLD 356

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             VV+ N+L++MY+K G +  +  VFD +  +  ISWN ++ GY+++G+  E ++ +N+M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            E     P+  T+++++   SH G   +G+ +  +++  K+    ++    C++D+ G+ 
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI--KNSLYLDVFVATCLIDLYGKC 474

Query: 413 GRVGEALEFIKNMPFE---PTAAILGSL 437
           GR+ +A+     +P +   P  AI+ SL
Sbjct: 475 GRLEDAMSLFYEIPRDTSVPWNAIIASL 502



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 171/315 (54%), Gaps = 11/315 (3%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ L N+CVN   +   +++HA ++       + L T+LI  Y     +S +R  FD +
Sbjct: 24  DFNALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYI 80

Query: 120 RERNVVSWTAMISAYSQKAHSFEALN----LFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
            ++N+ SW ++ISAY +     EA+N    LF         P+ +TF  +L +C      
Sbjct: 81  HKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD- 139

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
             GK++H  + K  FE  ++V +SL+ +Y++ G +  A  VF  +P +DV S  A+ISG+
Sbjct: 140 --GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G    A+ +  +++ EG+  + +T AS+L   +    + +G  +H HVL+  + S V
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + N+LI+MYSK G L  ++ VFD M  R ++SWN+++  Y ++      +  F  M + 
Sbjct: 258 FVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM-QL 316

Query: 356 NKVKPDSVTYLAVLS 370
             ++PD +T +++ S
Sbjct: 317 GGIRPDLLTVVSLTS 331



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K++H+ +L F     +VL   LI++Y   G ++ SR  FD + ++ + SWN+++  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 340 GMGREVVELFNL---MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KD 393
           G   E +   N    M     ++PD  T+  +L  C           V  + V C   K 
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS--------LVDGKKVHCCVFKM 150

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           GFE ++     +V +  R G +  A +   +MP +   +    + G C+
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 340/573 (59%), Gaps = 4/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+A  N   L+ GQ +HA + K  +   V +   L+  Y K  C+ D  K+++ M +R
Sbjct: 420 SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR 479

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SW A +S           L +F  ML     PN +TF ++L SC+  F    G+Q+H
Sbjct: 480 DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVH 539

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + IIK+  + + +V ++L+DMYAK   + +A   F  L  RD+ + T II+ YAQ    E
Sbjct: 540 AHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGE 599

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+  FR++Q EG+  N  T A  L+  S LA+L  G+Q+HS V +    S + + ++L+
Sbjct: 600 KALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALV 659

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG +  +  +F+ +  R  I+WN ++ GY+++G G + +  F +M +E  + PD 
Sbjct: 660 DMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG-ISPDG 718

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           VT+  +LS CSH G+ + G   F+ +   +D G  P ++H  C+VD+LGR G+  E  +F
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMY--RDFGISPTVDHCACMVDILGRVGKFDELEDF 776

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+ M     A I  ++LGA ++H N+ +GE    +L E++PE   +Y++LSN++A+ GRW
Sbjct: 777 IQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRW 836

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           +DV RVR LM  K V K+PG SW+E +  +HTF + D SHP  +E+  K+ +L  +    
Sbjct: 837 DDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASI 896

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
            YVP    VL++V E +K++ L  HSE+LAL F LI T     IR+ KNLRIC DCH+  
Sbjct: 897 QYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVM 956

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +S +  +++ +RD  RFHH   G CSC D+W
Sbjct: 957 KHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 203/371 (54%), Gaps = 5/371 (1%)

Query: 50  ATLGLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           + + L+++  E+   T+L  C N + L+ GQ +H+ +IK  Y    ++   L+  Y+KC 
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              DA  +F  +++ ++V W+A+I+   Q+  S E++ LF  M   DT PN++T  ++L+
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + G+ IH+ + K  FE+ + V ++L+ MY K G +H+   ++E + +RD++S
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A +SG    G+ +  + +F  +  EG I N  T+ S+L + S L  + +G+QVH+H++
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII 543

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           + ++     +  +LIDMY+KC  L  +   F+ +S R + +W  ++  Y++   G + + 
Sbjct: 544 KNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F  M++E  VKP+  T    LSGCS     + G  + H +V  K G   ++     +VD
Sbjct: 604 YFRQMQQEG-VKPNEFTLAGCLSGCSSLASLEGGQQL-HSMV-FKSGHVSDMFVGSALVD 660

Query: 408 MLGRAGRVGEA 418
           M  + G + EA
Sbjct: 661 MYAKCGCMEEA 671



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 1/311 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T L AC     L  G+++HA   K      +++ + L+  Y KC  +  A KMF  M E+
Sbjct: 218 TGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ 277

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N V+W  +++ Y+Q+      L LF  M+  D + NEFT  TVL  CA +   + G+ IH
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           SLIIK  +E + ++G  L+DMY+K G   +A GVF+ + + D+V  +A+I+   Q G  E
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E+I+LF  +++   + N  T  S+L+A +    L +G+ +H+ V ++   + V + N+L+
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY K G +    +++++M +R +ISWNA L G    GM    + +F  M EE  + P+ 
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI-PNM 516

Query: 363 VTYLAVLSGCS 373
            T++++L  CS
Sbjct: 517 YTFISILGSCS 527



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 221/463 (47%), Gaps = 40/463 (8%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           + + Y ++L  C ++R+L   + +H  ++K    P  +L   L+  Y KC   + AR + 
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            +M +R+VVSWTA+I     +  + +++ LF  M      PNEFT AT L +C+     +
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALD 230

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LGKQ+H+   K      ++VGS+L+D+YAK G I  A  +F  +PE++ V+   +++GYA
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q G     ++LF  +    +  N  T  +VL   +    L  G+ +HS +++        
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +   L+DMYSKCG    +  VF  + +  ++ W+A++    + G   E ++LF+LMR  +
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            + P+  T  ++LS  ++ G    G ++ H  V  K GFE ++     +V M  + G V 
Sbjct: 411 TL-PNQYTICSLLSAATNTGNLQYGQSI-HACV-WKYGFETDVAVSNALVTMYMKNGCVH 467

Query: 417 EALEFIKNM----------------------------------PFEPTAAILGSLLGACR 442
           +  +  ++M                                   F P      S+LG+C 
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVI--LSNLYASAGRWED 483
             ++V  G  V   +++ + ++  N+V   L ++YA     ED
Sbjct: 528 CLFDVHYGRQVHAHIIKNQLDD-NNFVCTALIDMYAKCMYLED 569


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 344/607 (56%), Gaps = 13/607 (2%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           L  NG  + AL E      EMR E        +  +  A  + R    G+++HA  +K  
Sbjct: 83  LAQNGHFSTALFEF----FEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCG 138

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
               V++       Y K     DARK+FDE+ ERN+ +W A IS         EA+  FI
Sbjct: 139 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFI 198

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
              R   +PN  TF   L +C+     +LG Q+H L+ +S F++ + V + L+D Y K  
Sbjct: 199 EFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCK 258

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           +I  +  +F  +  ++ VS  ++++ Y Q   DE+A  L+ + + E + ++    +SVL+
Sbjct: 259 QIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLS 318

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +G+A L  G+ +H+H ++  +   + + ++L+DMY KCG +  S + FD M E+ +++
Sbjct: 319 ACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT 378

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            N+++ GY+  G     + LF  M        P+ +T++++LS CS  G  + G+ +F  
Sbjct: 379 LNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDS 438

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +     G EP  EHY C+VDMLGRAG V +A EFIK MP +PT ++ G+L  ACR+H   
Sbjct: 439 MKSTY-GIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKP 497

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
            +G    + L +++P+++GN+V+LSN +A+AGRW +   VRE MK   + K  G SWI +
Sbjct: 498 HLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITV 557

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
              +H F A DRSH M +E+   + +L  K + AGY PD+   LYD++EE+K   +  HS
Sbjct: 558 KNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHS 617

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLAL FGL+  P   PIR+ KNLRIC DCH+F KFVS    R++ +RD NRFH   +G 
Sbjct: 618 EKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGI 677

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 678 CSCKDYW 684



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 205/434 (47%), Gaps = 10/434 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL   ++  ++R G+ VHA ++KT    PP +L   LI  Y+K +    AR +      R
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSWT+++S  +Q  H   AL  F  M R    PN+FTF  V  + A       GKQIH
Sbjct: 72  NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIH 131

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +L +K      ++VG S  DMY K     +AR +F+ +PER++ +  A IS     G  +
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPK 191

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAIE F + +  G   N +T+   L A S    L  G Q+H  V R    + V + N LI
Sbjct: 192 EAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLI 251

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D Y KC  +  S  +F  M  +  +SW +++  Y ++    +   L+   R+E  V+   
Sbjct: 252 DFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKE-IVETSD 310

Query: 363 VTYLAVLSGCSHGGMEDRGLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
               +VLS C+     + G ++  H +  C    E  I     +VDM G+ G + ++ + 
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKAC---VERNIFVGSALVDMYGKCGCIEDSEQA 367

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS---A 478
              MP E     L SL+G       VD+   + + +       A NY+   +L ++   A
Sbjct: 368 FDEMP-EKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRA 426

Query: 479 GRWEDVTRVRELMK 492
           G  E+  ++ + MK
Sbjct: 427 GAVENGMKIFDSMK 440


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 344/575 (59%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L+A      +  GQ++H+ + K  +   +++ T L+  Y KC  +  A ++FD+M 
Sbjct: 248 FSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMP 307

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGK 179
           ERN+VSW +MI  +        A+ +F  +LR  T  PNE + ++VL++CA   G   G+
Sbjct: 308 ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGR 367

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H +++K       YV +SL+DMY K     E   +F+C+ +RDVV+   ++ G+ Q  
Sbjct: 368 QVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQND 427

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA   F  ++ EG++ +  ++++VL + + LAAL  G  +H  +++      + +  
Sbjct: 428 KFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG 487

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLI MY+KCGSL  + +VF+ + +  VISW AM+  Y  HG   +V+ELF  M  E  ++
Sbjct: 488 SLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG-IE 546

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P  VT++ VLS CSH G  + GLA F+ +    D   P  EHY C+VD+LGRAG + EA 
Sbjct: 547 PSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHD-MNPGPEHYACMVDLLGRAGWLDEAK 605

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI++MP +PT ++ G+LLGACR + N+ +G    +RL E+EP N GNYV+L+N+   +G
Sbjct: 606 RFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSG 665

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           R E+   VR LM    V K+PG SWI++  +   F A DRSH   +E+   +++L    K
Sbjct: 666 RLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVK 725

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GYV +   V   ++E ++E+ L  HSEKLAL FGL+  P  +PIR+ KNLR C  CH 
Sbjct: 726 KKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHT 785

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K  SK++ R++ +RD NRFH   +G CSCGDYW
Sbjct: 786 VMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 205/367 (55%), Gaps = 6/367 (1%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           + LLN  +  R+L+   ++H  +I   Y    +L   LI  Y KC CL+ A  +F     
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 122 --RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             + +V+WT++I+  S      +AL+LF +M  S   PN+FTF+++L++ A       G+
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+HSLI K  F+++I+VG++L+DMYAK   +H A  VF+ +PER++VS  ++I G+    
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 240 LDEEAIELFRK-LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           L + A+ +F+  L+ + +I N V+ +SVL+A + +  L  G+QVH  V+++ +     + 
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVM 385

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+DMY KC       ++F  + +R V++WN +++G+ ++    E    F +MR E  +
Sbjct: 386 NSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREG-I 444

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD  ++  VL   +      +G A+  +I+  K G+   +   G ++ M  + G + +A
Sbjct: 445 LPDEASFSTVLHSSASLAALHQGTAIHDQII--KLGYVKNMCILGSLITMYAKCGSLVDA 502

Query: 419 LEFIKNM 425
            +  + +
Sbjct: 503 YQVFEGI 509


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/617 (37%), Positives = 365/617 (59%), Gaps = 22/617 (3%)

Query: 27  PPNPQN--LKTLCSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           PP+  N  ++ L S+    +AL    T+   GL+     Y  ++ AC        G  VH
Sbjct: 159 PPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVH 218

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
            H++K+ +    Y+ + LI  Y   + L  A+++F+    R+VVSW AMI  Y +     
Sbjct: 219 THVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMG 278

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
            A  +F RM+  D      ++ T++   A     +  K++   + + N  S     +S+L
Sbjct: 279 HARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS----WNSML 330

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
             + K G + +A G+F  +P RDVVS  ++++ YAQ G   EA+ LF +++  G+     
Sbjct: 331 AGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEA 390

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T  S+L+A + L AL  G  +H+++    I    ++  +L+DMY+KCG ++ + +VF+ M
Sbjct: 391 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 450

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             + V++WN ++ G + HG  +E  +LF  M+E   V+P+ +T++A+LS CSH GM D G
Sbjct: 451 ESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG-VEPNDITFVAILSACSHAGMVDEG 509

Query: 382 LAVFHEIVDCKD---GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
                +++DC     G EP++EHYGCV+D+L RAG + EA+E I  MP EP  + LG+LL
Sbjct: 510 ----QKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALL 565

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
           G CR+H N ++GE VG+RL+ ++P ++G Y++LSN+YA+A +W+D  +VR LMK   ++K
Sbjct: 566 GGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK 625

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEE 557
            PG S IEL  ++H F A D SHP   ++  K+ ++  + K A GY  D   VL D++EE
Sbjct: 626 VPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEE 685

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
            KE  L  HSEKLA+ +GL+       IR++KNLR+C DCH+  K +SKVYGR++ +RD+
Sbjct: 686 DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDR 745

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH  +G CSC D+W
Sbjct: 746 NRFHHFEDGECSCLDFW 762



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 212/466 (45%), Gaps = 53/466 (11%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
           SS++ T   LT P  P NPQ L                             +L N C   
Sbjct: 81  SSMSRTPNPLTNP--PSNPQIL-----------------------------SLFNPC--- 106

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC--ECLSDARKMFDEMRERNVVSWTA 129
           +TLR  ++VHA +I T +  P  L     +         L+ A+ +F  ++      + +
Sbjct: 107 KTLRHLKQVHAQII-THHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 165

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I A S      EAL L+  ML+S  +P+  T+  V+ +C  +     G  +H+ ++KS 
Sbjct: 166 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 225

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           FE   Y+ SSL+ +YA    +  A+ +F     RDVVS  A+I GY +      A  +F 
Sbjct: 226 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 285

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS-YVVLQNSLIDMYSKC 308
           ++    +IS         T ++G A +  GK   +  L  E+P   +V  NS++  + KC
Sbjct: 286 RMVCRDVISWN-------TMINGYAIV--GKIDEAKRLFDEMPERNLVSWNSMLAGFVKC 336

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G++  +  +F  M  R V+SWN+ML  Y++ G   E + LF+ MR    VKP   T +++
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG-VKPTEATVVSL 395

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           LS C+H G  D+GL +   I D +      +     +VDM  + G++  A +    M  +
Sbjct: 396 LSACAHLGALDKGLHLHTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESK 453

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILS 472
              A   +++    +H NV   + + + + E  +EP +     ILS
Sbjct: 454 DVLA-WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 355/601 (59%), Gaps = 40/601 (6%)

Query: 72  RTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           +++   ++ HAH+I T     P    +   ++  +    LS A ++FD++ + +V  +  
Sbjct: 26  KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNT 85

Query: 130 MISAYSQ-KAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           MI A++     S  ++ +F+ M+R S   PN +TF  V  +C    G   G+QI    IK
Sbjct: 86  MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 145

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFEC---------------------------- 219
              ES+++V ++++ MYA  G + EAR VF+                             
Sbjct: 146 IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 205

Query: 220 ---LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
              + ERDVVS T II+GY Q+G  +EA++LF ++   G   N  T AS L A + L AL
Sbjct: 206 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 265

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLV 334
             G+ +H ++ + EI     L  SL+DMY+KCG + ++ +VF +    +  V  WNAM+ 
Sbjct: 266 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 325

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY+ HG  +E ++LF  M+ E KV P+ VT++A+L+ CSHG + + G   F  +     G
Sbjct: 326 GYAMHGKSKEAIDLFEQMKVE-KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSY-G 383

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EPEIEHYGC+VD+LGR+G + EA E + NMP  P A I G+LLGACR+H +++ G+ +G
Sbjct: 384 IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIG 443

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + + E++ ++ G +V+L+NLY+++G+W++   VR+ ++     K PG S IEL+ + H F
Sbjct: 444 KIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQF 503

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV-DEEQKEKVLLGHSEKLALT 573
              DRSHP  ++L   + +++ K K AGYVP+   VL D+ DEE KE  L  HSEKLA+ 
Sbjct: 504 LVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIA 563

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TP G  IR++KNLR+C DCH   KF+SKVY R++ +RD+ R+HH  +G CSC DY
Sbjct: 564 FGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDY 623

Query: 634 W 634
           W
Sbjct: 624 W 624



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 142/317 (44%), Gaps = 59/317 (18%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +  AC N   +  G+++  H IK      +++   +I  Y     + +AR++FD   +++
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 182

Query: 124 VVSWTAM-------------------------------ISAYSQKAHSFEALNLFIRMLR 152
           + SW  M                               I+ Y Q     EAL+LF  ML+
Sbjct: 183 LYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ 242

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           +   PNEFT A+ L +CA     + G+ IH  I KS  + +  + +SLLDMYAK G I  
Sbjct: 243 TGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDF 302

Query: 213 ARGVF--ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
           A  VF  E   +  V    A+I GYA  G  +EAI+LF +++VE +  N VT+ ++L A 
Sbjct: 303 AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 362

Query: 271 SGLAALGHGKQVH-----------SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           S      HGK V            S+ +  EI  Y      ++D+  + G L  +     
Sbjct: 363 S------HGKLVEEGRGYFKSMASSYGIEPEIEHY----GCMVDLLGRSGLLKEAEETVF 412

Query: 320 NM---SERTVISWNAML 333
           NM    + T+  W A+L
Sbjct: 413 NMPMAPDATI--WGALL 427


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 342/571 (59%), Gaps = 3/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC        G+++H    K  +   V+++  L+  Y K   +S AR +FD++ +R 
Sbjct: 91  VLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 150

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWT++IS Y Q     EALN+F  M + + +P+     +V+T+         GK IH 
Sbjct: 151 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 210

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L+ K   E    +  SL  MYAK G +  AR  F  + + +++   A+ISGYA  G  EE
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 270

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           AI+LFR++  + +  + +T  S + A + + +L   + +  ++ + E      +   LID
Sbjct: 271 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+  +R VFD ++++ V+ W+ M++GY  HG G+E + L+N M++   V P+  
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG-VCPNDG 389

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ +L+ C + G+   G  +FH + D   G EP  +HY CVVD+LGRAG + +A +FI 
Sbjct: 390 TFIGLLTACKNSGLVKEGWELFHLMPD--HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIM 447

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +MP +P  ++ G+LL AC++H  V +GE   ++L  ++P N G+YV LSNLYASA  W  
Sbjct: 448 SMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTR 507

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V  VR +M +K + KD G S IE++  L TF   DRSHP  +E+  ++ +L  + K AGY
Sbjct: 508 VANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGY 567

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           VP M  VL+D++ E+ E+ L  HSE+LA+ +G+I T  G  +R+ KNLR C++CH+  K 
Sbjct: 568 VPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKL 627

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD  RFHH  +G CSCGD+W
Sbjct: 628 ISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 165/291 (56%), Gaps = 13/291 (4%)

Query: 96  RTRLIVFYNKCECLSD---ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           R  +I F N C    D   A K F E+ E +++ W A+I  Y+QK      + +++ M  
Sbjct: 19  RFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQI 78

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S   PN FTF  VL +C G     +GKQIH    K  F S+++V +SL+ MYAK G+I  
Sbjct: 79  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 138

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR VF+ L +R VVS T+IISGY Q G   EA+ +F++++   +  +++   SV+TA + 
Sbjct: 139 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 198

Query: 273 LAALGHGKQVHSHV----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           +  LG GK +H  V    L FE P  V+   SL  MY+K G +  +R  F+ M +  +I 
Sbjct: 199 VEDLGQGKSIHGLVTKLGLEFE-PDIVI---SLTTMYAKRGLVEVARFFFNRMEKPNLIL 254

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL-AVLSGCSHGGME 378
           WNAM+ GY+ +G G E ++LF  M  +N ++ DS+T   AVL+    G +E
Sbjct: 255 WNAMISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLE 304



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G ++ A   F  + E D++   AII GY Q  + +  I ++  +Q+  +  N  T+  VL
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A  G +  G GKQ+H    ++   S V +QNSL+ MY+K G ++Y+R VFD + +RTV+
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFH 386
           SW +++ GY ++G   E + +F  MR+ N VKPD +  ++V++  ++  +ED G     H
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCN-VKPDWIALVSVMT--AYTNVEDLGQGKSIH 209

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
            +V  K G E E +    +  M  + G V E   F  N   +P   +  +++
Sbjct: 210 GLV-TKLGLEFEPDIVISLTTMYAKRGLV-EVARFFFNRMEKPNLILWNAMI 259


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 347/578 (60%), Gaps = 19/578 (3%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE-MRERN 123
             +C +      G ++H H+IKT   P  +++T LI  Y KC  ++ ARK+FDE    RN
Sbjct: 63  FKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRN 122

Query: 124 V-VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V + A+I+ YS  +   +A+ LF +M +     N  T   ++  CAG      G  +H
Sbjct: 123 LAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLH 182

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +  ++   +  + VG+ LL MY + G +  AR +F+ +PE+ +++  A+ISGYAQ GL  
Sbjct: 183 ACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAG 242

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY---VVLQN 299
             ++L+RK++  G++ + VT   VL++ + L A   G++V     R E+  +     L+N
Sbjct: 243 HVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQ---RIELSGFGFNPFLKN 299

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI+MY++CG+L  +R +FD M+E+ VISW A++ GY  HG G   V+LF+ M   +++ 
Sbjct: 300 ALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL- 358

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD   +++VLS CSH G+ ++GL  F   ++   G +P  EHY CVVD+LGRAGR+ EA 
Sbjct: 359 PDGAAFVSVLSACSHAGLTEKGLYYF-TAMERDYGLQPGPEHYSCVVDLLGRAGRLEEAR 417

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + I +M  EP  A+ G+LLGAC++H NV++ E   ++++E EP N G YV+LSN+++ AG
Sbjct: 418 KLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAG 477

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
             E + RVR +M+E+ + K+PG S++E    +H F A DR+HP  +E+   +  L    K
Sbjct: 478 NMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIK 537

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLG---HSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
             G   D      +  E + E+++ G   HSEKLA+ FGLI T  G  I VIKNLR+C D
Sbjct: 538 RRGGSND------NDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGD 591

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH F K VS++  R++ +RD  RFHH   G CSC DYW
Sbjct: 592 CHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 167/307 (54%), Gaps = 5/307 (1%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +    SW A +   +++ H  EALNL+ +ML S   PN FTF     SCA       G Q
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSC-TAIISGYAQL 238
           +H  +IK+  E   +V +SL+ MY K   I  AR VF E    R++  C  A+I+GY+  
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
               +A+ LFR+++ EG+  N VT   ++   +G   LG G  +H+  +RF +   + + 
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N L+ MY +CGS+ ++R++FD M E+ +I+WNAM+ GY+++G+   V++L+  M E   +
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM-EFTGI 256

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD VT + VLS C+H G    G  V   I     GF P +++   +++M  R G + +A
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKA 314

Query: 419 LEFIKNM 425
                 M
Sbjct: 315 RAIFDGM 321



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 1/152 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L++C +      G+ V   +  + +    +L+  LI  Y +C  L  AR +FD M E+N
Sbjct: 266 VLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKN 325

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+SWTA+I+ Y        A+ LF  M+ SD  P+   F +VL++C+ A   E G    +
Sbjct: 326 VISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFT 385

Query: 184 LIIKS-NFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +    +      S ++D+  +AGR+ EAR
Sbjct: 386 AMERDYGLQPGPEHYSCVVDLLGRAGRLEEAR 417


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 363/606 (59%), Gaps = 7/606 (1%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L     NG   +AL    EM   G +       +++ A         G ++HA+ +K   
Sbjct: 391 LSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGL 450

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              + +   L+  Y K   +     +FD+M +++VVSWT +I+ ++Q      AL LF  
Sbjct: 451 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFRE 510

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           +     + +    +++L +C+G       K+IHS II+    S + + + ++D+Y + G 
Sbjct: 511 VQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGN 569

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  +FE +  +DVVS T++IS Y   GL  EA+ELF  ++  G+  + ++  S+L+A
Sbjct: 570 VDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 629

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L+AL  GK++H  ++R        L ++L+DMY++CG+L  SR VF+ +  + ++ W
Sbjct: 630 AASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLW 689

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            +M+  Y  HG GR  ++LF  M +E+ + PD + ++AVL  CSH G+ + G   F E +
Sbjct: 690 TSMINAYGMHGCGRAAIDLFRRMEDES-IAPDHIAFVAVLYACSHSGLMNEGRR-FLESM 747

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             +   EP  EHY C+VD+LGRA  + EA +F+K M  EPTA +  +LLGAC++H N ++
Sbjct: 748 KYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKEL 807

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           GE   Q+L+E++PEN GNYV++SN+YA+  RW+DV  VR  MK   + K+PG SWIE+  
Sbjct: 808 GEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGN 867

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            +HTF A D+SHP   E+ +K+ Q++ K  KE GYV     VL++  EE+K ++L GHSE
Sbjct: 868 KVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSE 927

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           +LA+ +G++ TPEGA +R+ KNLR+C DCHNF K +SK + R++ +RD NRFHH   G C
Sbjct: 928 RLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVC 987

Query: 629 SCGDYW 634
           SCGD W
Sbjct: 988 SCGDVW 993



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 211/402 (52%), Gaps = 14/402 (3%)

Query: 21  LTVPSFPPNP---QNLKTLCSNGQLTKALIEMATLGLEM---RF---EEYDTLLNACVNQ 71
           L +  FP  P    +L+ +C  G + +A   +  L       +F   E Y ++L  C ++
Sbjct: 68  LKISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSK 127

Query: 72  RTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
           + L  GQ+VHAHMI +      V+L TRL+  Y KC CL DA K+FD M  + + +W AM
Sbjct: 128 KALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAM 187

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I AY        +L L+  M  S    +  TF  +L +C        G ++H L IK  +
Sbjct: 188 IGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGY 247

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDEEAIELFR 249
            S ++V +S++ MY K   ++ AR +F+ +PE+ DVVS  ++IS Y+  G   EA+ LF 
Sbjct: 248 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 307

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++Q   +  N  T+ + L A    + +  G  +H+ VL+      V + N+LI MY++ G
Sbjct: 308 EMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFG 367

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +  +F NM +   ISWN+ML G+ ++G+  E ++ ++ MR+  + KPD V  ++++
Sbjct: 368 KMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISII 426

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           +  +  G    G+ +    +  K+G + +++    +VDM  +
Sbjct: 427 AASARSGNTLNGMQIHAYAM--KNGLDSDLQVGNSLVDMYAK 466



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 211/398 (53%), Gaps = 7/398 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+ +    +  +L AC   +  R G  VH   IK  Y   V++   ++  Y KC 
Sbjct: 206 EMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN 265

Query: 108 CLSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
            L+ AR++FD M E+ +VVSW +MISAYS    S EAL LF  M ++   PN +TF   L
Sbjct: 266 DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 325

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C  +   + G  IH+ ++KS++  +++V ++L+ MYA+ G++ EA  +F  + + D +
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI 385

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +++SG+ Q GL  EA++ + +++  G   + V   S++ A +      +G Q+H++ 
Sbjct: 386 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYA 445

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + S + + NSL+DMY+K  S+ Y   +FD M ++ V+SW  ++ G++++G     +
Sbjct: 446 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 505

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           ELF  ++ E  +  D +   ++L  CS   +      +   I+  + G    +   G +V
Sbjct: 506 ELFREVQLEG-IDLDVMMISSILLACSGLKLISSVKEIHSYII--RKGLSDLVLQNG-IV 561

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           D+ G  G V  A    + + F+   +    +  +C VH
Sbjct: 562 DVYGECGNVDYAARMFELIEFKDVVSWTSMI--SCYVH 597


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 336/611 (54%), Gaps = 72/611 (11%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           ++ + L+  Y +    +DAR + D M  R VV W+A+I+A++    +  A  L  RM   
Sbjct: 56  FVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSD 115

Query: 154 DTEPNEFTFATVLT------------------------------SCA----GAFG-FELG 178
             EPN  T+  +++                              SCA    G  G   +G
Sbjct: 116 GVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVG 175

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA-- 236
           +Q+H  ++K+       V ++L+DMY K GR  E   VF+     DV SC A+++G +  
Sbjct: 176 EQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRN 235

Query: 237 ---------------------------------QLGLDEEAIELFRKLQVEGMISNYVTY 263
                                            Q G D EA++LFR++Q EG+  N VT 
Sbjct: 236 AQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTI 295

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
             VL A + +AAL HG+  H   LR      + + ++L+DMY+KCG +  +R +F+ M  
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY 355

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R V+SWNAM+ GY+ HG     V LF  M + +K KPD VT+  VL  CS  G  + G +
Sbjct: 356 RNVVSWNAMIGGYAMHGEAENAVRLFRSM-QSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            F+E+   K G  P +EHY C+V +LGRAG++ +A + I  MPFEP   I GSLLG+CRV
Sbjct: 415 YFNEMQH-KHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRV 473

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H NV + E   + L ++EPENAGNYV+LSN+YAS   W+ V R+R++MK   + K+ G S
Sbjct: 474 HGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCS 533

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           WIE+   +H   A D SHPM   ++ K+K L+++ +  G+ P    VL+DV+E++K+ +L
Sbjct: 534 WIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDIL 593

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+  GLI T  G P++VIKNLRIC DCH   KF+S    R++ +RD NRFHH 
Sbjct: 594 SVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHF 653

Query: 624 VEGTCSCGDYW 634
            +G CSC DYW
Sbjct: 654 KDGKCSCADYW 664


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  N   +R  + VH   ++  +   V++ T L+  Y+K  C+  AR++F+ M ER
Sbjct: 127 SVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER 186

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV+W A++S YS    S EA++LF  M R     + +T  +++ +       ++G  IH
Sbjct: 187 NVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             II++ +E+  ++ ++L+D+Y     + +A  VF  +  +DV + T +++G++     +
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWD 306

Query: 243 EAIELFRK-LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            AI+ F K L ++ +  + +    +L++ S   AL  G++VH+  ++    + + + +++
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAV 366

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           IDMY+ CG+L  ++R F  M E+ V+ WNAM+ G   +G G + ++LF L  + + + PD
Sbjct: 367 IDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF-LQMKGSGLDPD 425

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             T+++VL  CSH GM   GL +F+ +V       P ++HY CV+D+LGRAG++  A  F
Sbjct: 426 ESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVI-PNLQHYACVIDILGRAGQLDAAYSF 484

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I NMPF+P   +  +LLGACR+H N+ +G  + Q++ E+EP +AG YV+LSN+YA AG W
Sbjct: 485 INNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNW 544

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           E V   R  ++ K + KDPG S IE++Q ++TF A ++ HP   ++   +K L +K K+A
Sbjct: 545 EGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKA 604

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVP+ + +L DV ++ K+ +L  HSEK+A+ FGL+ T     IR+ KNLR C DCH  +
Sbjct: 605 GYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTAS 664

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KFVSKV+GR + ++D NRFH   +G CSC DYW
Sbjct: 665 KFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 206/406 (50%), Gaps = 6/406 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L+  Q++HA +I +      +L   L+  Y  C  L+DA+++F     +NVVSWT +I
Sbjct: 35  KDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILI 94

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           S  ++     EA+++F  M+  + +PN  T ++VL + A      + K +H   ++  FE
Sbjct: 95  SGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFE 154

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            +++V ++L+DMY+K G +  AR +FE + ER+VV+  AI+SGY+  G  EEAI+LF  +
Sbjct: 155 GNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLM 214

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           + +G++ ++ T  S++ A   +  L  G  +H  ++R    +   ++ +L+D+Y     +
Sbjct: 215 RRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCV 274

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             + RVF  MS + V +W  ML G+S        ++ FN M     +K DS+  + +LS 
Sbjct: 275 DDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSS 334

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G   +G  V    +  K  F   I     V+DM    G + +A  F   M  +   
Sbjct: 335 CSHSGALQQGRRV--HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 432 AILGSLLGACRVHYNVD-IGEFVGQRLMEIEPENAGNYVILSNLYA 476
                + G     Y  D I  F+  +   ++P+ +     +S LYA
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDES---TFVSVLYA 435



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 177/328 (53%), Gaps = 20/328 (6%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL + F    +L+ A ++   L+ G  +H  +I+T Y    +++T L+  Y    C+ DA
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAG 171
            ++F EM  ++V +WT M++ +S   H   A+  F +ML   + + +      +L+SC+ 
Sbjct: 278 HRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSH 337

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +   + G+++H+L IK+ F ++I+VGS+++DMYA  G + +A+  F  + E+DVV   A+
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           I+G    G   +AI+LF +++  G+  +  T+ SVL A S    +  G Q+  H+++   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK--- 454

Query: 292 PSYVV--LQN--SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-HG---MGR 343
            S+V+  LQ+   +ID+  + G L  +    +NM  +      + L+G  + HG   +G 
Sbjct: 455 TSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 344 EVVE-LFNLMREENKVKPDSVTYLAVLS 370
           E+ + +F       +++P+   Y  +LS
Sbjct: 515 EISQKIF-------EMEPNDAGYYVLLS 535


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 349/559 (62%), Gaps = 4/559 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G ++HA+ +K      + +   L+  Y K   +     +FD+M +++VVSWT +I+ ++Q
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                 AL LF  +     + +    +++L +C+G       K+IHS II+    S + +
Sbjct: 462 NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVL 520

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            + ++D+Y + G +  A  +FE +  +DVVS T++IS Y   GL  EA+ELF  ++  G+
Sbjct: 521 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 580

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             + ++  S+L+A + L+AL  GK++H  ++R        L ++L+DMY++CG+L  SR 
Sbjct: 581 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRN 640

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF+ +  + ++ W +M+  Y  HG GR  ++LF  M +E+ + PD + ++AVL  CSH G
Sbjct: 641 VFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDES-IAPDHIAFVAVLYACSHSG 699

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + G   F E +  +   EP  EHY C+VD+LGRA  + EA +F+K M  EPTA +  +
Sbjct: 700 LMNEGRR-FLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCA 758

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LLGAC++H N ++GE   Q+L+E++PEN GNYV++SN+Y++  RW+DV  VR  MK   +
Sbjct: 759 LLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGL 818

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCVLYDVD 555
            K+PG SWIE+   +HTF A D+SHP   E+ +K+ Q++ K  KE GYV     VL++  
Sbjct: 819 KKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAK 878

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+K ++L GHSE+LA+ +G++ TPEGA +R+ KNLR+C DCHNF K +SK + R++ +R
Sbjct: 879 EEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMR 938

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFHH   G CSCGD W
Sbjct: 939 DANRFHHFKGGVCSCGDVW 957



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 211/402 (52%), Gaps = 14/402 (3%)

Query: 21  LTVPSFPPNP---QNLKTLCSNGQLTKALIEMATLGLEM---RF---EEYDTLLNACVNQ 71
           L +  FP  P    +L+ +C  G + +A   +  L       +F   E Y ++L  C ++
Sbjct: 32  LKISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSK 91

Query: 72  RTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
           + L  GQ+VHAHMI +      V+L TRL+  Y KC CL DA K+FD M  + + +W AM
Sbjct: 92  KALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAM 151

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I AY        +L L+  M  S    +  TF  +L +C        G ++H L IK  +
Sbjct: 152 IGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGY 211

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDEEAIELFR 249
            S ++V +S++ MY K   ++ AR +F+ +PE+ DVVS  ++IS Y+  G   EA+ LF 
Sbjct: 212 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 271

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++Q   +  N  T+ + L A    + +  G  +H+ VL+      V + N+LI MY++ G
Sbjct: 272 EMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFG 331

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +  +F NM +   ISWN+ML G+ ++G+  E ++ ++ MR+  + KPD V  ++++
Sbjct: 332 KMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISII 390

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           +  +  G    G+ +    +  K+G + +++    +VDM  +
Sbjct: 391 AASARSGNTLHGMQIHAYAM--KNGLDSDLQVGNSLVDMYAK 430



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 211/398 (53%), Gaps = 7/398 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+ +    +  +L AC   +  R G  VH   IK  Y   V++   ++  Y KC 
Sbjct: 170 EMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN 229

Query: 108 CLSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
            L+ AR++FD M E+ +VVSW +MISAYS    S EAL LF  M ++   PN +TF   L
Sbjct: 230 DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 289

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C  +   + G  IH+ ++KS++  +++V ++L+ MYA+ G++ EA  +F  + + D +
Sbjct: 290 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI 349

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +++SG+ Q GL  EA++ + +++  G   + V   S++ A +      HG Q+H++ 
Sbjct: 350 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYA 409

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + S + + NSL+DMY+K  S+ Y   +FD M ++ V+SW  ++ G++++G     +
Sbjct: 410 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 469

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           ELF  ++ E  +  D +   ++L  CS   +      +   I+  + G    +   G +V
Sbjct: 470 ELFREVQLEG-IDLDVMMISSILLACSGLKLISSVKEIHSYII--RKGLSDLVLQNG-IV 525

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           D+ G  G V  A    + + F+   +    +  +C VH
Sbjct: 526 DVYGECGNVDYAARMFELIEFKDVVSWTSMI--SCYVH 561



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           + G+ +H  +I+  +     L + L+  Y +C  L  +R +F+ +R +++V WT+MI+AY
Sbjct: 601 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 660

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHSLIIKSNFESH 193
                   A++LF RM      P+   F  VL +C+ +     G++ + S+  +   E  
Sbjct: 661 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPW 720

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
               + L+D+  +A  + EA    + +           + G  Q+  ++E  E+  +  +
Sbjct: 721 PEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLL 780

Query: 254 E---GMISNYVTYASVLTA 269
           E       NYV  ++V +A
Sbjct: 781 EMDPENPGNYVLVSNVYSA 799


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 370/629 (58%), Gaps = 24/629 (3%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVN 70
           ++S TF     ++P   P+P+      SN +  K+L +   + L  R    + +L     
Sbjct: 5   YASTTFAA---SLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLP---- 57

Query: 71  QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
                    +HA +I+  +    ++   L+   +KC  +  A ++F      NV  +TA+
Sbjct: 58  ---------IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTAL 108

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I  +    +  EA+ L+ RML     P+ +  A++L +C        G+++HS  +K  F
Sbjct: 109 IDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGF 168

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----RDVVSCTAIISGYAQLGLDEEAIE 246
            S+  V   ++++Y K G + +AR VFE +PE    +D V  TA+I G+ +      A+E
Sbjct: 169 SSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALE 228

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
            FR +Q E +  N  T   VL+A S L AL  G+ VHS++ +FEI   + + N+LI+MYS
Sbjct: 229 AFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYS 288

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           +CGS+  ++ VFD M +R VI++N M+ G S +G  R+ +ELF +M    +++P +VT++
Sbjct: 289 RCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGR-RLRPTNVTFV 347

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            VL+ CSHGG+ D G  +FH +   +D   EP+IEHYGC+VD+LGR GR+ EA + I+ M
Sbjct: 348 GVLNACSHGGLVDFGFEIFHSMA--RDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 405

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
              P   +LG+LL AC++H N+++GE V + L +    ++G YV+LS++YAS+G+W++  
Sbjct: 406 KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAA 465

Query: 486 RVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
           +VR  MKE  + K+PG S IE++  +H F   D  HP +E +  K+++L+   +  GY P
Sbjct: 466 QVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHP 525

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           +   VL D+++ +KE  L  HSE+LA+ +GLI T     IRV+KNLR+C DCH+  K ++
Sbjct: 526 EKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIA 585

Query: 606 KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K+  RK+ +RD+NRFH+   G CSCGDYW
Sbjct: 586 KITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/493 (43%), Positives = 320/493 (64%), Gaps = 4/493 (0%)

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           L  +  MLR+D  P++ +F+ +L SCA +   +LG+  H  I+K  FE  + + + LLD 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 204 YAKAGRIHEARGVFECLPERDVVSCT--AIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           YAK G + EAR +F+ + ER+  S T   +IS Y Q G    AI +F+++Q E +    V
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T  S+L+A + L AL  G+ +H ++    +   VVL N+LIDMY KCG+L  +  VF  +
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGL 194

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           S + +  WN+++VG   +G G E +  F +M +E  +KPD VT++ +LSGCSH G+   G
Sbjct: 195 SRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEG-IKPDGVTFVGILSGCSHSGLLSAG 253

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
              F E++    G EP +EHYGC+VD+LGRAG + EALE I+ MP +P + +LGSLL AC
Sbjct: 254 QRYFSEMLGVY-GLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRAC 312

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
           ++H +  +GE V Q+L+E++P + GNYV LSNLYAS  RW+DV   R+LM ++ V K PG
Sbjct: 313 QIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPG 372

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
            S IE++ I+H F A D SHP   +++A + +++ + K  G+VP+ + VL+D++EE+KE 
Sbjct: 373 CSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEG 432

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
            +  HSE++A+ FGL+ TP G  IRV+KNLR C DCH+  K +S  + R++ +RD+ RFH
Sbjct: 433 AIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFH 492

Query: 622 HIVEGTCSCGDYW 634
           H   G+CSC DYW
Sbjct: 493 HFRNGSCSCNDYW 505



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 139/278 (50%), Gaps = 7/278 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L +C      + G+  H  ++K  +   + L+T L+ FY K   + +AR +FD M 
Sbjct: 33  FSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMT 92

Query: 121 ERNV--VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           ERN   V+W  MISAY Q      A+++F +M   + +P E T  ++L++CA     ++G
Sbjct: 93  ERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG 152

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH  I     +  + +G++L+DMY K G +  A  VF  L  +++    +II G    
Sbjct: 153 EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN 212

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVL 297
           G  EEAI  F  ++ EG+  + VT+  +L+  S    L  G++  S +L  + +   V  
Sbjct: 213 GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEH 272

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
              ++D+  + G L  +  +   M  +     N+M++G
Sbjct: 273 YGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 355/582 (60%), Gaps = 9/582 (1%)

Query: 60  EYDTLLNACVNQRTLRGG------QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
            +DT  ++ V++  LR G      Q+VHAH+I +       L T+LI        ++ AR
Sbjct: 84  NFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYAR 143

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F  +   +   + +++   S+   S + +  + RML S    + +TF +V+ +CA   
Sbjct: 144 RLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLS 203

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              LGK+IHS ++   + S +YV ++L+ +YAKA  +  A+ VF+ +P+R +++  ++IS
Sbjct: 204 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 263

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GY Q GL +E+I LF  +   G   +  T  S+L++ S L AL  G  +H +        
Sbjct: 264 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 323

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            VVL  SLI+MY++CG+++ +R VFD+M ER V++W AM+ GY  HG GR+ +ELF  MR
Sbjct: 324 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMR 383

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
                +P+++T++AVLS C+H G+ D G  VF  + +   G  P +EH  C+VDM GRAG
Sbjct: 384 AYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAY-GLVPGVEHNVCMVDMFGRAG 441

Query: 414 RVGEALEFIKN-MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
            + +A +FIK  +P EP  A+  S+LGACR+H N D+G  V + ++ +EPEN G+YV+LS
Sbjct: 442 LLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLS 501

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YA AGR + V  VR +M  + + K  G S IE+++  + F   D+SHP    +   + 
Sbjct: 502 NIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLD 561

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +L  +  E+GYVP    +++D++EE+++  L  HSEKLAL FGL+ T +G  IR++KNLR
Sbjct: 562 ELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLR 621

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IC DCH+  K +S +  R++ +RDK RFHH  +G+CSC DYW
Sbjct: 622 ICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 355/582 (60%), Gaps = 9/582 (1%)

Query: 60  EYDTLLNACVNQRTLRGG------QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
            +DT  ++ V++  LR G      Q+VHAH+I +       L T+LI        ++ AR
Sbjct: 20  NFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYAR 79

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F  +   +   + +++   S+   S + +  + RML S    + +TF +V+ +CA   
Sbjct: 80  RLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLS 139

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              LGK+IHS ++   + S +YV ++L+ +YAKA  +  A+ VF+ +P+R +++  ++IS
Sbjct: 140 ALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLIS 199

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GY Q GL +E+I LF  +   G   +  T  S+L++ S L AL  G  +H +        
Sbjct: 200 GYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL 259

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            VVL  SLI+MY++CG+++ +R VFD+M ER V++W AM+ GY  HG GR+ +ELF  MR
Sbjct: 260 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMR 319

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
                +P+++T++AVLS C+H G+ D G  VF  + +   G  P +EH  C+VDM GRAG
Sbjct: 320 AYGP-RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAY-GLVPGVEHNVCMVDMFGRAG 377

Query: 414 RVGEALEFIKN-MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
            + +A +FIK  +P EP  A+  S+LGACR+H N D+G  V + ++ +EPEN G+YV+LS
Sbjct: 378 LLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLS 437

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YA AGR + V  VR +M  + + K  G S IE+++  + F   D+SHP    +   + 
Sbjct: 438 NIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLD 497

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +L  +  E+GYVP    +++D++EE+++  L  HSEKLAL FGL+ T +G  IR++KNLR
Sbjct: 498 ELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLR 557

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IC DCH+  K +S +  R++ +RDK RFHH  +G+CSC DYW
Sbjct: 558 ICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/572 (38%), Positives = 345/572 (60%), Gaps = 34/572 (5%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFY-----NKCECLSDARKMFDEMRERNVVSWTAMIS 132
           ++ HA +++T +    Y+   L+  Y     N+      + ++FD +R+ NV  W  MI 
Sbjct: 72  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
              +    F+A+ L+  M+ +   PN++T+  VL +C+ A     G Q+H+ ++K     
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 191

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFE---------CLPERDVVSCTAIISGYAQLGLDEE 243
             ++ SS + MYA  GR+ EAR + +         C+P+R               G   E
Sbjct: 192 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRK--------------GCFME 237

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E+F ++Q E +        SVL+A + L AL  G+ +H++  R  I    VL  SL+D
Sbjct: 238 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 297

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  +  VF+ MS + V SWNAM+ G + HG   + ++LF+ M     + P+ +
Sbjct: 298 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEI 353

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ VL+ C+HGG+  +GL +F+ +   + G EP+IEHYGC+VD+LGRAG + EA + + 
Sbjct: 354 TFVGVLNACAHGGLVQKGLTIFNSMRK-EYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 412

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           ++P EPT A+ G+LLGACR H NV++GE VG+ L+E+EP+N+G Y +LSN+YA AGRWE+
Sbjct: 413 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 472

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQ-ILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           V  VR+LMKE+ +   PG S I+L +  +H F   D SHP  +++   + ++  + +  G
Sbjct: 473 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEG 532

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y PD S VL+D+DEE+KE  +  HSEKLA+ FGLI T  G  IR++KNLR+C DCH+  K
Sbjct: 533 YEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATK 592

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +S+VY R++ +RD+ R+HH   G CSC D+W
Sbjct: 593 LISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 149/313 (47%), Gaps = 13/313 (4%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +K    N +  KA++   EM           Y  +L AC +   +  G +VHAH++K   
Sbjct: 130 IKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 189

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               ++ +  I  Y     L +AR++ D+            +    +K    EAL +F +
Sbjct: 190 GGDGHILSSAIRMYASFGRLVEARRILDDKGGE-----VDAVCMPDRKGCFMEALEIFHQ 244

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M +    P +F   +VL++CA     + G+ IH+   +++ +    +G+SL+DMYAK GR
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 304

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  A  VFE +  ++V S  A+I G A  G  E+AI+LF K+ +     N +T+  VL A
Sbjct: 305 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNA 361

Query: 270 LSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVI 327
            +    +  G  + + + + + +   +     ++D+  + G LT + +V  ++ +E T  
Sbjct: 362 CAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPA 421

Query: 328 SWNAMLVGYSKHG 340
            W A+L    KHG
Sbjct: 422 VWGALLGACRKHG 434


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 338/558 (60%), Gaps = 2/558 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G  +    +K  +    Y+ T L   Y+KC  +  AR +F ++ + ++VS+ AMIS Y+ 
Sbjct: 226 GMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTC 285

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              +  ++ LF  +L S  + N  +   ++          L + IH    KS   S+  V
Sbjct: 286 NNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSV 345

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++L  +Y++   I  AR +F+   E+ + S  A+ISGYAQ GL E+AI LF+++Q   +
Sbjct: 346 STALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEV 405

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N VT  S+L+A + L AL  GK VH  + R    S + +  +LIDMY+KCGS+T ++R
Sbjct: 406 RPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQR 465

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +F  M E+  ++WNAM+ GY  HG G E + LFN M   ++V P  VT+L+VL  CSH G
Sbjct: 466 LFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLH-SRVSPTGVTFLSVLYACSHAG 524

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           +   G  +F  +V    GFEP  EHY C+VD+LGRAG + +AL+FI+ MP EP   + G+
Sbjct: 525 LVREGDEIFRSMVH-DHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGA 583

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LLGAC +H + ++      +L E++P+N G YV+LSN+Y++   + +   VR ++K + +
Sbjct: 584 LLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKL 643

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K PG + IE+   LH F + D+SHP    + A +++L+ K +EAG+  +    L+DV+E
Sbjct: 644 AKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEE 703

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E+KE ++  HSEKLA+ FGLI +  G  IR+IKNLR+C+DCHN  KF+SK+  R + +RD
Sbjct: 704 EEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRD 763

Query: 617 KNRFHHIVEGTCSCGDYW 634
            NRFHH  +G CSCGDYW
Sbjct: 764 ANRFHHFKDGICSCGDYW 781



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 4/352 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +++ + ++  Y K   ++ ARK+FD M ER+ V W  M+S   + +   EA+ +F  M++
Sbjct: 141 LFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVK 200

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
                +  T A VL   A      LG  I  L +K  F SH YV + L  +Y+K G I  
Sbjct: 201 GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIET 260

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F  + + D+VS  A+ISGY      E ++ LF++L V G   N  +   ++     
Sbjct: 261 ARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFP 320

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
              L   + +H    +  + S   +  +L  +YS+   +  +R +FD  SE+++ SWNAM
Sbjct: 321 FGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAM 380

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY+++G+  + + LF  M ++ +V+P+ VT  ++LS C+  G    G  V H++++ +
Sbjct: 381 ISGYAQNGLTEKAISLFQEM-QKCEVRPNPVTVTSILSACAQLGALSLGKWV-HDLIN-R 437

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           + FE  I     ++DM  + G + EA      MP E  A    +++    +H
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLH 488



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 202/462 (43%), Gaps = 43/462 (9%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           TL    + HA +I       +   T+L    +  + +  A  +F  +   ++  +  +I 
Sbjct: 22  TLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIR 81

Query: 133 AYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           A+S       A++L+  + +S   EP+ FT+A V++  +      L        I + F 
Sbjct: 82  AFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFG 138

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S ++VGS+++  Y K  R+  AR VF+ + ERD V    ++SG  +    +EAI +F  +
Sbjct: 139 SDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDM 198

Query: 252 QVEGMISNYVTYASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
              G+  +  T A+VL  ++ L   ALG G Q  +  + F   +YV+    L  +YSKCG
Sbjct: 199 VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI--TGLACLYSKCG 256

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVKPDSVTYLAV 368
            +  +R +F  + +  ++S+NAM+ GY+ +      V LF  L+    KV   S+  L  
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIP 316

Query: 369 ---------LSGCSHGGMEDRGLAV--------------FHEIVDCKDGF----EPEIEH 401
                    L+ C HG     G+                 +EI   +  F    E  +  
Sbjct: 317 VFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLAS 376

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +  ++    + G   +A+   + M      P    + S+L AC     + +G++V   L+
Sbjct: 377 WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWV-HDLI 435

Query: 459 EIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEK-AVT 497
             E   +  +V   L ++YA  G   +  R+  +M EK AVT
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVT 477



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH  + +  +   +++ T LI  Y KC  +++A+++F  M E+
Sbjct: 414 SILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           N V+W AMIS Y    +  EALNLF  ML S   P   TF +VL +C+ A     G +I 
Sbjct: 474 NAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIF 533

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            S++    FE      + ++D+  +AG + +A      +P
Sbjct: 534 RSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMP 573


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/597 (36%), Positives = 362/597 (60%), Gaps = 4/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N +  +  +EM  LG +     +  +++A V       GQ++H  ++KT +   V++   
Sbjct: 222 NEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNA 281

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
            + FY+K +C+++ RK+F+EM E + VS+  +I+AY+      E+++LF  +  +  +  
Sbjct: 282 FLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRK 341

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            F F T+L+  A +   ++G+Q+H+ ++ S  +    V +SL+DMYAK G+  EA  +F 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFL 401

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  R  V  TA+IS   Q GL E  ++LF +++   + ++  T+A VL A + LA++  
Sbjct: 402 RLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILL 461

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+HS V+R    + V    +L+DMY+ C S+  + + F+ MSER V++WNA+L  Y++
Sbjct: 462 GKQLHSCVIRSGFMN-VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQ 520

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +G G+  ++ F  M      +PDSV++L +L+ CSH  + + GL  F+++    +   P+
Sbjct: 521 NGDGKGTLKSFEEMIMSG-YQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYN-LAPK 578

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            EHY  +VD L R+GR  EA + +  MPFEP   +  S+L +CR+H N  +      +L 
Sbjct: 579 REHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLF 638

Query: 459 EIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++   +A  YV +SN++A AG+W+ V +V++ M+++ V K P  SW+E+   +H F A+
Sbjct: 639 NMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSAN 698

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D  HP + E+  K++ L+ + ++ GY PD+SC   +VD+E K   L  HSE+LA+ F LI
Sbjct: 699 DDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALI 758

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TPEG+PI V+KNLR C DCH   K +SK+ GR++++RD NRFHH  +G+CSCGDYW
Sbjct: 759 NTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 203/403 (50%), Gaps = 9/403 (2%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G   K   EM   G +  +  Y TLL  C +    +   + HA ++K  +     +   L
Sbjct: 122 GDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTL 181

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           +  Y K   L  AR++F EM   + VS+  MI+ Y+    + EA+ LF+ M     +P++
Sbjct: 182 LDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSD 241

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           FTFA V+++  G      G+QIH  ++K++F  +++VG++ LD Y+K   ++E R +F  
Sbjct: 242 FTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNE 301

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +PE D VS   II+ YA +G  +E+I+LF++LQ          + ++L+  +    L  G
Sbjct: 302 MPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMG 361

Query: 280 KQVHSH-VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           +Q+H+  V+    P + V  NSL+DMY+KCG    + R+F  +S R+ + W AM+    +
Sbjct: 362 RQLHAQVVVSMADPDFRV-SNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQ 420

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            G+    ++LF  MR  N V  D  T+  VL   ++      G  +   ++  + GF   
Sbjct: 421 RGLHENGLKLFYEMRRAN-VSADQATFACVLKASANLASILLGKQLHSCVI--RSGFMN- 476

Query: 399 IEHYGC-VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
             + GC ++DM      + +A++  + M  E       +LL A
Sbjct: 477 -VYSGCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSA 517



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 143/254 (56%), Gaps = 6/254 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y K   L+ AR++FD+  ER VV+WT MI AYS+     +A  LF  M RS ++P+
Sbjct: 80  IISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPD 139

Query: 159 EFTFATVLTSCAGAFGFELGK---QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             T+ T+LT C      E+ K   Q H+ I+K     +  V ++LLD Y K G +  AR 
Sbjct: 140 YVTYITLLTGCN---DLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARR 196

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  +   D VS   +I+GYA  GL+EEAIELF ++Q  G   +  T+A+V++A  GL  
Sbjct: 197 LFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDD 256

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
              G+Q+H  V++      V + N+ +D YSK   +   R++F+ M E   +S+N ++  
Sbjct: 257 TAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITA 316

Query: 336 YSKHGMGREVVELF 349
           Y+  G  +E ++LF
Sbjct: 317 YAWVGKVKESIDLF 330



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 157/378 (41%), Gaps = 79/378 (20%)

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG- 239
           I + I+K+ F+      + ++   ++ G++ +AR + + +P R+  S   IISGY + G 
Sbjct: 30  IDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGN 89

Query: 240 ----------LDE--------------------EAIELFRKLQVEGMISNYVTYASVLTA 269
                      DE                    +A +LF ++   G   +YVTY ++LT 
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG 149

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L       Q H+ +++        + N+L+D Y K G L  +RR+F  M     +S+
Sbjct: 150 CNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSF 209

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-----SHGGMEDRGLAV 384
           N M+ GY+ +G+  E +ELF  M+     KP   T+ AV+S       +  G +  G  V
Sbjct: 210 NVMITGYANNGLNEEAIELFVEMQNLG-FKPSDFTFAAVISASVGLDDTAFGQQIHGFVV 268

Query: 385 ----------------FHEIVDCKDGFE------PEIE--HYGCVVDMLGRAGRVGEALE 420
                           F+   DC +         PE++   Y  ++      G+V E+++
Sbjct: 269 KTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESID 328

Query: 421 FI----------KNMPFEPTAAILGSLLGACRVHYNVDIG-EFVGQRLMEIEPENAGNYV 469
                       KN PF    +I  S L       ++ +G +   Q ++ +   +     
Sbjct: 329 LFQELQFTTFDRKNFPFPTMLSIAASSL-------DLQMGRQLHAQVVVSMADPDFRVSN 381

Query: 470 ILSNLYASAGRWEDVTRV 487
            L ++YA  G++E+  R+
Sbjct: 382 SLVDMYAKCGKFEEADRI 399


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 350/596 (58%), Gaps = 14/596 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG++       T+L+AC +   ++ G+ +H+ +  + +   + +   ++  Y +C  
Sbjct: 151 MLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGA 210

Query: 109 LSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
           + +ARK+FD M E  R+VVSW  M+S Y       +A+ L+ RM      P++ T+ ++L
Sbjct: 211 VEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLL 267

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++C+ A    LG+ +H  I+    E ++ VG++L+ MYAK G   EAR VF+ + +R ++
Sbjct: 268 SACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSII 327

Query: 227 SCTAIISGYAQLGLDEEAIELFRK-LQVEGMIS------NYVTYASVLTALSGLAALGHG 279
           S T IIS Y +  L  EA  LF++ L++E   S      + + + ++L A + ++AL  G
Sbjct: 328 SWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG 387

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSK 338
           K V        + S   +  +++++Y KCG +  +RR+FD +  R  +  WNAM+  Y++
Sbjct: 388 KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQ 447

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            G   E ++LF  M  E  V+PDS +++++L  CSH G+ED+G + F  +          
Sbjct: 448 FGQSHEALKLFWRMEMEG-VRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRT 506

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           I+H+GCV D+LGR GR+ EA EF++ +P +P A    SLL ACR H ++   + V  +L+
Sbjct: 507 IQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLL 566

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            +EP  A  YV LSN+YA   +W  V +VR+ M E+ V K+ G S IE+ + +H F   D
Sbjct: 567 RLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGD 626

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            +HP   E+  ++ +L  + KE GYVPD   VL+ VDE++KE++L  HSE+LA+  GLI 
Sbjct: 627 DAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLIS 686

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           TP G P+RV KNLR+C DCH   K +SK+ GRK+ +RD  RFH   +G CSC DYW
Sbjct: 687 TPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 222/426 (52%), Gaps = 21/426 (4%)

Query: 23  VPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHA 82
           V +F  + Q+ +TL       +AL  M   G+      + T L +C +  +LR G R+H 
Sbjct: 30  VAAFAISGQSKETL-------RALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQ 82

Query: 83  HMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RERNVVSWTAMISAYSQKAHSF 141
            ++ +       +   L+  Y KC  LS A+++F +M R RNV+SW+ M  A++   + +
Sbjct: 83  MVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVW 142

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           EAL  F  ML    +  +    T+L++C+     + G+ IHS I  S FES + V ++++
Sbjct: 143 EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVM 202

Query: 202 DMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
            MY + G + EAR VF+ + E  RDVVS   ++S Y      ++AI+L++++Q+     +
Sbjct: 203 TMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLR---PD 259

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            VTY S+L+A S    +G G+ +H  ++  E+   V++ N+L+ MY+KCGS T +R VFD
Sbjct: 260 KVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFD 319

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE------ENKVKPDSVTYLAVLSGCS 373
            M +R++ISW  ++  Y +  +  E   LF  M E        +VKPD++ ++ +L+ C+
Sbjct: 320 KMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACA 379

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                ++G  V  +   C  G   +      VV++ G+ G + EA      +   P   +
Sbjct: 380 DVSALEQGKMVSEQAASC--GLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQL 437

Query: 434 LGSLLG 439
             +++ 
Sbjct: 438 WNAMIA 443



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 170/328 (51%), Gaps = 11/328 (3%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y  C+   DA+  FD + +RN+ SWT +++A++    S E L    RM +    P+  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           F T L SC        G +IH +++ S  E    V ++LL+MY K G +  A+ VF  + 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 222 E-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
             R+V+S + +   +A  G   EA+  FR + + G+ +      ++L+A S  A +  G+
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSK 338
            +HS +      S +++ N+++ MY +CG++  +R+VFD M E  R V+SWN ML  Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIVDCKDGFEP 397
           +  G++ ++L+  M    +++PD VTY+++LS CS    ED GL  V H+ +   D  E 
Sbjct: 241 NDRGKDAIQLYQRM----QLRPDKVTYVSLLSACSSA--EDVGLGRVLHKQI-VNDELEK 293

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +     +V M  + G   EA      M
Sbjct: 294 NVIVGNALVSMYAKCGSHTEARAVFDKM 321



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 46/333 (13%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MYA      +A+  F+ L +R++ S T +++ +A  G  +E +    +++ +G+  + VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVL--RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           + + L +     +L  G ++H  V+  R EI   V   N+L++MY KCGSL++++RVF  
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKV--SNALLNMYKKCGSLSHAKRVFAK 118

Query: 321 MSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           M   R VISW+ M   ++ HG   E +  F  M     +K      + +LS CS   +  
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQ 177

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE---------------------- 417
            G  +   I     GFE E+     V+ M GR G V E                      
Sbjct: 178 DGRMIHSCIA--LSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 418 -----------ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-- 464
                      A++  + M   P      SLL AC    +V +G  + ++++  E E   
Sbjct: 236 STYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 465 -AGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
             GN ++  ++YA  G   +   V + M+++++
Sbjct: 296 IVGNALV--SMYAKCGSHTEARAVFDKMEQRSI 326


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 347/582 (59%), Gaps = 2/582 (0%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL +    +  +L AC    + + G  +H+ ++K  +   V   T L+  Y+    L+DA
Sbjct: 106 GLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDA 165

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            K+FDE+ +R+VV+WTA+ S Y+      EA++LF +M+    +P+ +    VL++C   
Sbjct: 166 HKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHV 225

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + G+ I   + +   + + +V ++L+++YAK G++ +AR VF+ + E+D+V+ + +I
Sbjct: 226 GDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            GYA     +E IELF ++  E +  +  +    L++ + L AL  G+   S + R E  
Sbjct: 286 QGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + + + N+LIDMY+KCG++     VF  M E+ ++  NA + G +K+G  +    +F   
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG-Q 404

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            E+  + PD  T+L +L GC H G+   GL  F+ I  C    +  +EHYGC+VD+ GRA
Sbjct: 405 TEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAI-SCVYALKRTVEHYGCMVDLWGRA 463

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G + +A   I +MP  P A + G+LL  CR+  +  + E V + L+ +EP NAGNYV LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y+  GRW++   VR++M +K + K PG SWIEL+  +H F A D+SHP+ +++ AK++
Sbjct: 524 NIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLE 583

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
            L  + +  G+VP    V +DV+EE+KE+VL  HSEKLA+  GLI T  G  IRV+KNLR
Sbjct: 584 DLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLR 643

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +C DCH   K +SK+  R++ +RD NRFH    G+CSC DYW
Sbjct: 644 VCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 213/450 (47%), Gaps = 43/450 (9%)

Query: 21  LTVPSFPPNPQNLKTL----CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG 76
           +TVPS     Q +KTL    C+   L +  + +    L      +DT L   + +RTL  
Sbjct: 4   VTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLH-----HDTFLVNLLLKRTLFF 58

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            Q  ++++                              +F   +  N+  + ++I+ +  
Sbjct: 59  RQTKYSYL------------------------------LFSHTQFPNIFLYNSLINGFVN 88

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E L+LF+ + +     + FTF  VL +C  A   +LG  +HSL++K  F   +  
Sbjct: 89  NHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAA 148

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            +SLL +Y+ +GR+++A  +F+ +P+R VV+ TA+ SGY   G   EAI+LF+K+   G+
Sbjct: 149 MTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGV 208

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +      VL+A   +  L  G+ +  ++   E+     ++ +L+++Y+KCG +  +R 
Sbjct: 209 KPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARS 268

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VFD+M E+ +++W+ M+ GY+ +   +E +ELF  M +EN +KPD  + +  LS C+  G
Sbjct: 269 VFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQEN-LKPDQFSIVGFLSSCASLG 327

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
             D G      ++D +  F   +     ++DM  + G +    E  K M  +    +  +
Sbjct: 328 ALDLGEWGI-SLID-RHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAA 385

Query: 437 LLGACRV-HYNVDIGEFVGQRLMEIEPENA 465
           + G  +  H  +    F     + I P+ +
Sbjct: 386 ISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 344/575 (59%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L+A      +  GQ++H+ + K  +   +++ T L+  Y KC  +  A ++FD+M 
Sbjct: 13  FSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMP 72

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGK 179
           ERN+VSW +MI  +        A+ +F  +LR  T  PNE + ++VL++CA   G   G+
Sbjct: 73  ERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGR 132

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H +++K       YV +SL+DMY K     E   +F+C+ +RDVV+   ++ G+ Q  
Sbjct: 133 QVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQND 192

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEA   F  ++ EG++ +  ++++VL + + LAAL  G  +H  +++      + +  
Sbjct: 193 KFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG 252

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLI MY+KCGSL  + +VF+ + +  VISW AM+  Y  HG   +V+ELF  M  E  ++
Sbjct: 253 SLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG-IE 311

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P  VT++ VLS CSH G  + GLA F+ +    D   P  EHY C+VD+LGRAG + EA 
Sbjct: 312 PSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHD-MNPGPEHYACMVDLLGRAGWLDEAK 370

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI++MP +PT ++ G+LLGACR + N+ +G    +RL E+EP N GNYV+L+N+   +G
Sbjct: 371 RFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSG 430

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           R E+   VR LM    V K+PG SWI++  +   F A DRSH   +E+   +++L    K
Sbjct: 431 RLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVK 490

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           + GYV +   V   ++E ++E+ L  HSEKLAL FGL+  P  +PIR+ KNLR C  CH 
Sbjct: 491 KKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHT 550

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K  SK++ R++ +RD NRFH   +G CSCGDYW
Sbjct: 551 VMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 158/274 (57%), Gaps = 4/274 (1%)

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S   PN+FTF+++L++ A       G+Q+HSLI K  F+++I+VG++L+DMYAK   +H 
Sbjct: 4   SGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHS 63

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMISNYVTYASVLTALS 271
           A  VF+ +PER++VS  ++I G+    L + A+ +F+  L+ + +I N V+ +SVL+A +
Sbjct: 64  AVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACA 123

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            +  L  G+QVH  V++F +     + NSL+DMY KC       ++F  + +R V++WN 
Sbjct: 124 NMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNV 183

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +++G+ ++    E    F +MR E  + PD  ++  VL   +      +G A+  +I+  
Sbjct: 184 LVMGFVQNDKFEEACNYFWVMRREG-ILPDEASFSTVLHSSASLAALHQGTAIHDQII-- 240

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           K G+   +   G ++ M  + G + +A +  + +
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 274



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           ++  G   N  T++S+L+A +    + HG+Q+HS + +    + + +  +L+DMY+KC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + RVFD M ER ++SWN+M+VG+  + +    V +F  +  E  V P+ V+  +VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
            C++ G  + G  V   +V  K G  P       ++DM
Sbjct: 121 ACANMGGLNFGRQVHGVVV--KFGLVPLTYVMNSLMDM 156


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 330/528 (62%), Gaps = 4/528 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVL 166
           + D  ++F EM  RNV+SWT+MI    Q   S EAL LF +M+    E  P   T+  V+
Sbjct: 151 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 210

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           T+CA A     G QIH+ + K  +    Y+ ++L+  YA   ++ ++  VF      +VV
Sbjct: 211 TACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVV 270

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
             TA+++GY      E+A+++F ++  EG++ N  ++ S L +  GL AL  G+++H+  
Sbjct: 271 IWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAA 330

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + + V + NSLI MY +CG+L     +F  +S++ ++SWN+++VG ++HG G   +
Sbjct: 331 VKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWAL 390

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
             FN M   + V+PD +T+  +LS CSH GM  +G  +F    + K   E +++HY C+V
Sbjct: 391 AFFNQM-VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA-EVKLDHYACMV 448

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGR+G++ EA E I+NMP +  + +   LL AC +H  +++ E   + ++++EP  + 
Sbjct: 449 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 508

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YV+LSNLYASA RW DV+R+R  MK++ +TK PGRSWI +    + F + DRSHP  + 
Sbjct: 509 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 568

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +  K++ L  K KE GYVPD    L+DV++EQKE +L  HSE+LA+ FGLI T EG+ I 
Sbjct: 569 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 628

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V+KNLR+C DCH+  K ++K+  RK+ +RD  RFHH ++G CSCGDYW
Sbjct: 629 VMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 48  EMATLGLEMR--FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           +M   G+E++     Y  ++ AC N   L  G ++HAH+ K  Y    Y+   LI FY  
Sbjct: 191 QMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYAN 250

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C+ + D+ ++F      NVV WTA+++ Y       +AL +F  M+R    PN+ +F + 
Sbjct: 251 CKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSA 310

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L SC G    + G++IH+  +K   E+ ++VG+SL+ MY + G +++   +F+ + ++++
Sbjct: 311 LNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNI 370

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           VS  ++I G AQ G    A+  F ++    +  + +T+  +L+A S
Sbjct: 371 VSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS 416



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 159/371 (42%), Gaps = 56/371 (15%)

Query: 83  HMIKTCYRPPVYLRTRLIVFYNK-------CECLSDARKMFDEMRERNVVSWTAMISAYS 135
           H ++  Y  PV    + +V +N        C  L+ ARK+FDEM ER+VVSWT MI+ + 
Sbjct: 60  HALQLFYEMPV----KDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFL 115

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q      A  LF +M   D                                       I 
Sbjct: 116 QFGKIEVAEGLFYKMPFRD---------------------------------------IA 136

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             +S++  Y   GR+ +   +F+ +P R+V+S T++I G  Q G  EEA+ LFR++   G
Sbjct: 137 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCG 196

Query: 256 --MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +     TY  V+TA +  +AL  G Q+H+HV +        +  +LI  Y+ C  +  
Sbjct: 197 VEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMED 256

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           S RVF       V+ W A++ GY  +    + +++F  M  E  V P+  ++ + L+ C 
Sbjct: 257 SLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREG-VLPNQSSFTSALNSCC 315

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                D G  +    V  K G E ++     ++ M  R G + + +   K +  +     
Sbjct: 316 GLEALDWGREIHTAAV--KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVS 372

Query: 434 LGSLLGACRVH 444
             S++  C  H
Sbjct: 373 WNSVIVGCAQH 383



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C +    K   EM   G+      + + LN+C     L  G+ +H   +K      V++ 
Sbjct: 283 CKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVG 342

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LIV Y +C  L+D   +F  + ++N+VSW ++I   +Q      AL  F +M+RS  E
Sbjct: 343 NSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVE 402

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARG 215
           P+E TF  +L++C+ +   + G+ +     ++ + E  +   + ++D+  ++G++ EA  
Sbjct: 403 PDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEE 462

Query: 216 VFECLP 221
           +   +P
Sbjct: 463 LIRNMP 468



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 13/222 (5%)

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           S++  + +  RI EAR VF+ +   DV   T +I+GYA+    + A++LF ++ V+ ++S
Sbjct: 16  SMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVS 75

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
               + S++      A L   +++   +    + S+  + N  +      G +  +  +F
Sbjct: 76  ----WNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQF----GKIEVAEGLF 127

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
             M  R + +WN+M+ GY  +G   + + LF  M   N      +++ +++ G    G  
Sbjct: 128 YKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRN-----VISWTSMIGGLDQHGRS 182

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  L +F +++ C    +P    Y CV+     A  + + ++
Sbjct: 183 EEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQ 224


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 363/620 (58%), Gaps = 51/620 (8%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-- 120
            +L AC +      G++VH + +++     V++   ++  Y KC  + +A K+F+ M+  
Sbjct: 236 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295

Query: 121 ---------------------------------ERNVVSWTAMISAYSQKAHSFEALNLF 147
                                            E NVV+W+A+I+ Y+Q+   FEAL++F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS--NFESH-----IYVGSSL 200
            +M    +EPN  T  ++L+ CA A     GK+ H   IK   N + +     + V ++L
Sbjct: 356 RQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 415

Query: 201 LDMYAKAGRIHEARGVFECLPERD--VVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMI 257
           +DMY+K      AR +F+ +P +D  VV+ T +I G AQ G   EA+ELF + LQ +  +
Sbjct: 416 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 475

Query: 258 -SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV-LQNSLIDMYSKCGSLTYSR 315
             N  T +  L A + L AL  G+Q+H++VLR    S ++ + N LIDMYSK G +  +R
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 535

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VFDNM +R  +SW +++ GY  HG G E +++F  M++   V PD VT++ VL  CSH 
Sbjct: 536 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLV-PDGVTFVVVLYACSHS 594

Query: 376 GMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GM D+G+  F+ +   KD G  P  EHY C+VD+L RAGR+ EA+E I+ MP +PT A+ 
Sbjct: 595 GMVDQGINYFNGM--NKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 652

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            +LL ACRV+ NV++GE+   +L+E+E  N G+Y +LSN+YA+A  W+DV R+R LMK  
Sbjct: 653 VALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNT 712

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K PG SW++  +   TF A D SHPM +++   ++ L  + K  GYVPD    L+DV
Sbjct: 713 GIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDV 772

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           D+E+K  +L  HSEKLAL +G++ T  GAPIR+ KNLR C DCH+   ++S +   ++ +
Sbjct: 773 DDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIV 832

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD +RFHH   G+CSC  YW
Sbjct: 833 RDSSRFHHFKNGSCSCRGYW 852



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 217/427 (50%), Gaps = 52/427 (12%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG       +  +L AC    + R G  VHA +  + +   V++   L+  Y +C  
Sbjct: 117 MQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGA 176

Query: 109 LSDARKMFDEMRERNV---VSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFAT 164
             +AR++FDEMRER V   VSW ++++AY Q   S  A+ +F RM       P+  +   
Sbjct: 177 WENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 236

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           VL +CA    +  GKQ+H   ++S     ++VG++++DMYAK G + EA  VFE +  +D
Sbjct: 237 VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKD 296

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA--------------- 269
           VVS  A+++GY+Q+G  ++A+ LF K++ E +  N VT+++V+                 
Sbjct: 297 VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 356

Query: 270 -----------------LSGLAALG---HGKQVHSHVLRF-------EIPSYVVLQNSLI 302
                            LSG A  G   HGK+ H H +++       +    +++ N+LI
Sbjct: 357 QMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALI 416

Query: 303 DMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMGREVVELFN-LMREENKVK 359
           DMYSKC S   +R +FD +   +R+V++W  ++ G ++HG   E +ELF+ +++ +N V 
Sbjct: 417 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 476

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEA 418
           P++ T    L  C+  G    G  +   ++  ++ FE  +     C++DM  ++G V  A
Sbjct: 477 PNAFTISCALMACARLGALRFGRQIHAYVL--RNRFESAMLFVANCLIDMYSKSGDVDAA 534

Query: 419 LEFIKNM 425
                NM
Sbjct: 535 RVVFDNM 541



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHM-IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           TL + C   ++L   + +H  + ++     P ++ +  + F +  + LS  R++      
Sbjct: 34  TLFHQC---KSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPS--S 88

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
             V  W  +I          + L L+ RM R    P+ +TF  VL +C     F  G  +
Sbjct: 89  HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 148

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQL 238
           H+++  S FE +++VG+ L+ MY + G    AR VF+ + ER   D+VS  +I++ Y Q 
Sbjct: 149 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 208

Query: 239 GLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           G    A+++F ++  + G+  + V+  +VL A + + A   GKQVH + LR  +   V +
Sbjct: 209 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFV 268

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+++DMY+KCG +  + +VF+ M  + V+SWNAM+ GYS+ G   + + LF  +REE K
Sbjct: 269 GNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE-K 327

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           ++ + VT+ AV++G +  G+    L VF ++  C  G EP +
Sbjct: 328 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLC--GSEPNV 367


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/605 (37%), Positives = 344/605 (56%), Gaps = 17/605 (2%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+L KA+    +M   G+      Y +LL +C+    L  G+++H+H+I+      + +
Sbjct: 166 NGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITV 225

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T +   Y +C  L  A+ +FD M  +N V+WT ++  Y+Q      AL LF RM     
Sbjct: 226 ETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGV 285

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           E +EF F+ VL  C G   +++G+QIHS I+K   ES + VG+ L+D Y K G I  A  
Sbjct: 286 ELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYR 345

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
            F  + E + VS +A+ISG++Q G  E+ I++F  L+ EG++ N   Y SV  A +  A 
Sbjct: 346 SFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQAN 405

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G Q H   ++  + SY+  +++++ MYSKCG L Y+RR F+++ E   ++W A++ G
Sbjct: 406 LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISG 465

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-G 394
           Y+ HG   E +  F  M+    V+P++VT++AVL+ CSH G+          +   +D G
Sbjct: 466 YAYHGNAAEALGFFRRMQSYG-VRPNAVTFIAVLTACSHSGLVAEAKQYLGSM--SRDYG 522

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            +P I+HY C++D   RAG + EALE I  MPFEP A    SLLG C  H ++ +G+   
Sbjct: 523 VKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAA 582

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + L  ++P +   Y++L NLY++ G+WE+   VR+LM E+ + K+   SWI +   +H F
Sbjct: 583 ENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRF 642

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEA-----GYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
              DR HP  E + +K+++      ++         D+SC L       +++ LL HSEK
Sbjct: 643 VVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSL-----SARKEQLLDHSEK 697

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGLI T + API V KNLR C DCH F K VS V GR++ +RD  RFHH   G CS
Sbjct: 698 LAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCS 757

Query: 630 CGDYW 634
           C DYW
Sbjct: 758 CNDYW 762



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 215/450 (47%), Gaps = 46/450 (10%)

Query: 32  NLKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           +L +L   G+L +A   L EM    + +    Y  L  AC   R+L  G+ +H  + +T 
Sbjct: 58  HLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTV 117

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
             P   +   L+  Y  C    D +K+FDEM  +N+VSW  +ISAY++     +A+ LF 
Sbjct: 118 KNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFS 177

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            M  S   PN   + ++L SC G    ELGKQIHS +I++   ++I V +++ +MY + G
Sbjct: 178 DMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCG 237

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  A+ VF+ +  ++ V+ T ++ GY Q    E A+ELF ++ +EG+  +   ++ VL 
Sbjct: 238 WLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLK 297

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
              GL     G+Q+HSH+++    S V +   L+D Y KCG +  + R F  +SE   +S
Sbjct: 298 VCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS 357

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-----------SHGGM 377
           W+A++ G+S+ G   + +++F  +R E  V  +S  Y +V   C           +HG  
Sbjct: 358 WSALISGFSQSGRLEDCIKIFTSLRSEG-VVLNSFIYTSVFQACAAQANLNMGSQAHGDA 416

Query: 378 EDRGLAVF-----------------------HEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             RGL  +                        E +D     EP+   +  ++      G 
Sbjct: 417 IKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESID-----EPDAVAWTAIISGYAYHGN 471

Query: 415 VGEALEFIKNMP---FEPTAAILGSLLGAC 441
             EAL F + M      P A    ++L AC
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTAC 501


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 352/597 (58%), Gaps = 16/597 (2%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG++       T+L+AC +   ++ G+ +H+ +  + +   + +   ++  Y +C  
Sbjct: 238 MLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGA 297

Query: 109 LSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATV 165
           + +ARK+FD M E  R+VVSW  M+SAY       +A+ L+ RM LR+D    + T+ ++
Sbjct: 298 VEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRAD----KVTYVSL 353

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L++C+ A    LG+ +H  I+    E ++ VG++L+ MYAK G   EAR VF+ + +R +
Sbjct: 354 LSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 413

Query: 226 VSCTAIISGYAQLGLDEEAIELFRK-LQVEGMIS------NYVTYASVLTALSGLAALGH 278
           +S T IIS Y +  L  EA  LF++ L++E   S      + + + ++L A + ++AL  
Sbjct: 414 ISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQ 473

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYS 337
           GK V        + S   +  +++++Y KCG +   RR+FD +  R  +  WNAM+  Y+
Sbjct: 474 GKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYA 533

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           + G   E ++LF  M  E  V+PDS +++++L  CSH G+ED+G + F  +         
Sbjct: 534 QFGQSHEALKLFWRMEMEG-VRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTR 592

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            I+H+GCV D+LGR GR+ EA EF++ +P +P A    SLL ACR H ++   + V  +L
Sbjct: 593 TIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKL 652

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           + +EP  A  YV LSN+YA   +W  V +VR+ M E+ V K+ G S IE+ + +H F   
Sbjct: 653 LRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATG 712

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D +HP   E+  ++ +L  + KE GYVPD   VL+ VDE++KE++L  HSE+LA+  GLI
Sbjct: 713 DDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLI 772

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TP G P+RV KNLR+C DCH   K +SK+ GRK+ +RD  RFH   +G CSC DYW
Sbjct: 773 STPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 203/407 (49%), Gaps = 17/407 (4%)

Query: 29  NPQNLKTLCSNGQLTKALIEMATLGLE---MRFEE--YDTLLNACVNQRTLRGGQRVHAH 83
           + + LK       L ++ I  A L LE   +R E   Y  LL  C   + L  G+++H+ 
Sbjct: 9   SSRGLKRCLHTASLDRSDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSL 68

Query: 84  MIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142
            +K    P  + L   ++  Y  C+   DA+  FD + +RN+ SWT +++A++    S E
Sbjct: 69  AVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKE 128

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
            L    RM +    P+  TF T L SC        G +IH +++ S  E    V ++LL+
Sbjct: 129 TLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLN 188

Query: 203 MYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           MY K G +  A+ VF  +   R+V+S + +   +A  G   EA+  FR + + G+ +   
Sbjct: 189 MYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKS 248

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
              ++L+A S  A +  G+ +HS +      S +++ N+++ MY +CG++  +R+VFD M
Sbjct: 249 AMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAM 308

Query: 322 SE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            E  R V+SWN ML  Y  +  G++ ++L+  M    +++ D VTY+++LS CS    ED
Sbjct: 309 DEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM----QLRADKVTYVSLLSACSSA--ED 362

Query: 380 RGLA-VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            GL  V H+ +   D  E  +     +V M  + G   EA      M
Sbjct: 363 VGLGRVLHKQI-VNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKM 408


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 354/601 (58%), Gaps = 27/601 (4%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   + L    +M  LG+++      ++L  C N  TL  G+ VH+  IK+ +   + 
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
               L+  Y+KC  L  A ++F++M ERNVVSWT+MI+ Y++   S  A+ L  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 347

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            + +     ++L +CA +   + GK +H  I  +N  S+++V ++L+DMYAK G +  A 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGAN 407

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF  +  +D++S   ++    +L  D                    T A +L A + L+
Sbjct: 408 SVFSTMVVKDIISWNTMV---GELKPDSR------------------TMACILPACASLS 446

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  GK++H ++LR    S   + N+L+D+Y KCG L  +R +FD +  + ++SW  M+ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG G E +  FN MR+   ++PD V+++++L  CSH G+ ++G   F+ I+     
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQGWRFFY-IMKNDFN 564

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP++EHY C+VD+L R G + +A +FI+ +P  P A I G+LL  CR+++++++ E V 
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN G YV+L+N+YA A + E+V R+RE + +K + K+PG SWIE+   ++ F
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLF 684

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
              ++ SHP  +++ + +K++  K KE GY P     L + DE QKE  L GHSEKLA+ 
Sbjct: 685 VSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMA 744

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGL+  P    IRV KNLR+C DCH  AKF+SK   R++ LRD NRFHH  +G CSC  +
Sbjct: 745 FGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGF 804

Query: 634 W 634
           W
Sbjct: 805 W 805



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 220/492 (44%), Gaps = 81/492 (16%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           E+  + Y ++L  C   ++L  G++VH+ +          L  +L+ FY  C  L + R+
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 115 MFDEMRERNV-------------------------------------------------- 124
           +FD M ++NV                                                  
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 125 -VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            +SW +MIS Y     +   L ++ +M+    + +  T  +VL  CA +    LGK +HS
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L IKS+FE  I   ++LLDMY+K G +  A  VFE + ER+VVS T++I+GY + G  + 
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           AI L ++++ EG+  + V   S+L A +   +L +GK VH ++    + S + + N+L+D
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMD 395

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+  +  VF  M  + +ISWN M+                       ++KPDS 
Sbjct: 396 MYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------------GELKPDSR 433

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T   +L  C+     +RG  +   I+  ++G+  +      +VD+  + G +G A     
Sbjct: 434 TMACILPACASLSALERGKEIHGYIL--RNGYSSDRHVANALVDLYVKCGVLGLARLLFD 491

Query: 424 NMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYAS--AGR 480
            +P +   +    + G     Y N  I  F   R   IEP+       +S LYA   +G 
Sbjct: 492 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYACSHSGL 548

Query: 481 WEDVTRVRELMK 492
            E   R   +MK
Sbjct: 549 LEQGWRFFYIMK 560



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 135/312 (43%), Gaps = 54/312 (17%)

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +  V  + A I  + Q      A+ L     +S+ E    T+ +VL  CAG      GK+
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKK 120

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE---------------------- 218
           +HS+I  ++      +G  L+  YA  G + E R VF+                      
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 219 -----CL-------------PE-----------RDVVSCTAIISGYAQLGLDEEAIELFR 249
                CL             PE           RDV+S  ++ISGY   GL E  + +++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G+  +  T  SVL   +    L  GK VHS  ++      +   N+L+DMYSKCG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            L  + RVF+ M ER V+SW +M+ GY++ G     + L   M +E  VK D V   ++L
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG-VKLDVVAITSIL 359

Query: 370 SGCSHGGMEDRG 381
             C+  G  D G
Sbjct: 360 HACARSGSLDNG 371



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 67/351 (19%)

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           F  + G  IH   +K+ F S I+     + + A   R            +  V    A I
Sbjct: 24  FSSQNGCFIHKPSLKTTFFSPIFRSCIPVRISATPTRT----------IDHQVTDYNAKI 73

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
             + QLG  E A+EL    Q   + +   TY SVL   +GL +L  GK+VHS +    + 
Sbjct: 74  LHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVG 131

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
               L   L+  Y+ CG L   RRVFD M ++ V  WN M+  Y+K G  +E + LF +M
Sbjct: 132 VDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 353 REEN--KVKPDS-------------VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            E+     +P+S             +++ +++SG    G+ +RGL ++ +++        
Sbjct: 192 VEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM-------- 243

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
              + G  VD+                      A I+  L+G C     + +G+ V    
Sbjct: 244 ---YLGIDVDL----------------------ATIISVLVG-CANSGTLSLGKAVHSLA 277

Query: 458 MEIEPENAGNYV-ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++   E   N+   L ++Y+  G  +   RV E M E+ V      SW  +
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV-----SWTSM 323


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/556 (39%), Positives = 351/556 (63%), Gaps = 2/556 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L  C     +   +  H  +I+      V L   LI  Y+KC  +  AR++FD M ER+
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSW  MI  Y++     EAL++F+ M     + +EFT ++VL++C         K++H 
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L +K+  + ++YVG++LLD+YAK G I +A  VFE + ++  V+ +++++GY Q    EE
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ L+R+ Q   +  N  T +SV+ A S LAAL  GKQ+H+ + +    S V + +S +D
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGSL  S  +F  + E+ +  WN ++ G++KH   +EV+ LF  M+++  + P+ V
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG-MHPNEV 357

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+ ++LS C H G+ + G   F +++    G  P + HY C+VD+LGRAG + EA E IK
Sbjct: 358 TFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 416

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           ++PF+PTA+I GSLL +CRV+ N+++ E   ++L E+EPENAGN+V+LSN+YA+  +WE+
Sbjct: 417 SIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEE 476

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           + + R+L+++  V K  G+SWI++   +HTF   +  HP   E+ + +  L +KF++ GY
Sbjct: 477 IAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGY 536

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
            P +   L+DV+  +KE++L+ HSEKLAL FGL+  PE +P+R++KNLRICVDCH F K 
Sbjct: 537 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKA 596

Query: 604 VSKVYGRKVSLRDKNR 619
            S    R + +RD NR
Sbjct: 597 ASMATRRFIIVRDVNR 612



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 14/227 (6%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           + LE       +++ AC N   L  G+++HA + K+ +   V++ +  +  Y KC  L +
Sbjct: 249 MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRE 308

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           +  +F E++E+N+  W  +IS +++ A   E + LF +M +    PNE TF+++L+ C  
Sbjct: 309 SYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGH 368

Query: 172 AFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
               E G++   L+  +     ++   S ++D+  +AG + EA  + + +P       TA
Sbjct: 369 TGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIP----FDPTA 424

Query: 231 IISG--------YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
            I G        Y  L L E A E   +L+ E    N+V  +++  A
Sbjct: 425 SIWGSLLASCRVYKNLELAEVAAEKLFELEPENA-GNHVLLSNIYAA 470


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 330/528 (62%), Gaps = 4/528 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVL 166
           + D  ++F EM  RNV+SWT+MI    Q   S EAL LF +M+    E  P   T+  V+
Sbjct: 135 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 194

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           T+CA A     G QIH+ + K  +    Y+ ++L+  YA   ++ ++  VF      +VV
Sbjct: 195 TACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVV 254

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
             TA+++GY      E+A+++F ++  EG++ N  ++ S L +  GL AL  G+++H+  
Sbjct: 255 IWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAA 314

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + + V + NSLI MY +CG+L     +F  +S++ ++SWN+++VG ++HG G   +
Sbjct: 315 VKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWAL 374

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
             FN M   + V+PD +T+  +LS CSH GM  +G  +F    + K   E +++HY C+V
Sbjct: 375 AFFNQM-VRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSA-EVKLDHYACMV 432

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGR+G++ EA E I+NMP +  + +   LL AC +H  +++ E   + ++++EP  + 
Sbjct: 433 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 492

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YV+LSNLYASA RW DV+R+R  MK++ +TK PGRSWI +    + F + DRSHP  + 
Sbjct: 493 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 552

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +  K++ L  K KE GYVPD    L+DV++EQKE +L  HSE+LA+ FGLI T EG+ I 
Sbjct: 553 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 612

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V+KNLR+C DCH+  K ++K+  RK+ +RD  RFHH ++G CSCGDYW
Sbjct: 613 VMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 48  EMATLGLEMR--FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           +M   G+E++     Y  ++ AC N   L  G ++HAH+ K  Y    Y+   LI FY  
Sbjct: 175 QMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYAN 234

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C+ + D+ ++F      NVV WTA+++ Y       +AL +F  M+R    PN+ +F + 
Sbjct: 235 CKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSA 294

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L SC G    + G++IH+  +K   E+ ++VG+SL+ MY + G +++   +F+ + ++++
Sbjct: 295 LNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNI 354

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           VS  ++I G AQ G    A+  F ++    +  + +T+  +L+A S
Sbjct: 355 VSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS 400



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 14/356 (3%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P VYL T +I  Y +      A ++F EM  ++VVSW +MI      A    A  LF  M
Sbjct: 24  PDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEM 83

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                E +  ++ T++    G   F   +    L  K  F   I   +S++  Y   GR+
Sbjct: 84  ----PERSVVSWTTMIN---GFLQFGKIEVAEGLFYKMPFRD-IAAWNSMIYGYCCNGRV 135

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG--MISNYVTYASVLT 268
            +   +F+ +P R+V+S T++I G  Q G  EEA+ LFR++   G  +     TY  V+T
Sbjct: 136 EDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVIT 195

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +  +AL  G Q+H+HV +        +  +LI  Y+ C  +  S RVF       V+ 
Sbjct: 196 ACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVI 255

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W A++ GY  +    + +++F  M  E  V P+  ++ + L+ C      D G  +    
Sbjct: 256 WTALVTGYGLNCKHEDALKVFGEMMREG-VLPNQSSFTSALNSCCGLEALDWGREIHTAA 314

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           V  K G E ++     ++ M  R G + + +   K +  +       S++  C  H
Sbjct: 315 V--KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQH 367



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C +    K   EM   G+      + + LN+C     L  G+ +H   +K      V++ 
Sbjct: 267 CKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVG 326

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             LIV Y +C  L+D   +F  + ++N+VSW ++I   +Q      AL  F +M+RS  E
Sbjct: 327 NSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVE 386

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARG 215
           P+E TF  +L++C+ +   + G+ +     ++ + E  +   + ++D+  ++G++ EA  
Sbjct: 387 PDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEE 446

Query: 216 VFECLP 221
           +   +P
Sbjct: 447 LIRNMP 452



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 103/213 (48%), Gaps = 15/213 (7%)

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           RI EAR VF+ +   DV   T +I+GYA+    + A++LF ++ V+ ++S    + S++ 
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVS----WNSMIK 65

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
                A L   +++       E+P   VV   ++I+ + + G +  +  +F  M  R + 
Sbjct: 66  GCFDCADLTMARKLFD-----EMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 120

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +WN+M+ GY  +G   + + LF  M   N      +++ +++ G    G  +  L +F +
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRN-----VISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           ++ C    +P    Y CV+     A  + + ++
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQ 208


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 352/620 (56%), Gaps = 33/620 (5%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
             EM  +G+         +++AC   + L+ G++V   + +        +   L+  Y K
Sbjct: 228 FFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMK 287

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  ARK+FDE  ++N+V +  ++S Y ++  + E L +   ML+    P+  T  + 
Sbjct: 288 CGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSA 347

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---------------- 209
           +++C+       GK  H  ++++  E    V +++++MY K G+                
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 210 ---------------IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
                          +  A  +F  +P+ D+VS   +I    Q  + +EAIELFR +Q E
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+ ++ VT   V +A   L AL   K +H ++ + +I   + L  +L+DM+++CG    +
Sbjct: 468 GITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            +VF+ M +R V +W A +   +  G G   +ELF+ M ++  +KPD V ++A+L+  SH
Sbjct: 528 MQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQG-IKPDGVVFVALLTALSH 586

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GG+ ++G  +F  + D   G  P+  HYGC+VD+LGRAG + EAL  I +M  EP   I 
Sbjct: 587 GGLVEQGWHIFRSMKDIY-GIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIW 645

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLL ACRVH NVDI  +  +R+ E++PE  G +V+LSN+YASAGRW+DV +VR  +KEK
Sbjct: 646 GSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEK 705

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
              K PG S IE++  +  F   D SHP    +   +K++  + ++ GYVPD++ VL DV
Sbjct: 706 GAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDV 765

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +E++KE +L  HSEKLA+ F LI T +G PIRV KNLRIC DCH+FAK VSK Y R++ +
Sbjct: 766 NEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIV 825

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD NRFH   +G CSCGDYW
Sbjct: 826 RDNNRFHFFQQGFCSCGDYW 845



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 198/393 (50%), Gaps = 34/393 (8%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+AC     L  G +VH  ++K  +   +++   LI FY +C  +   R++FD+M ERN
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERN 204

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWT++I  Y+++    EA++LF  M+     PN  T   V+++CA     +LG+Q+ +
Sbjct: 205 VVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCT 264

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I +   E +  + ++L+DMY K G I +AR +F+   ++++V    I+S Y + GL  E
Sbjct: 265 CIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLARE 324

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
            + +  ++   G   + +T  S ++A S L  +  GK  H +VLR  +  +  + N++I+
Sbjct: 325 VLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIIN 384

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG----------------------- 340
           MY KCG    + RVFD M  +T +SWN+++ G+ ++G                       
Sbjct: 385 MYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTM 444

Query: 341 --------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
                   M +E +ELF +M+ E  +  D VT + V S C + G  D    + H  +  K
Sbjct: 445 IGALVQESMFKEAIELFRVMQSEG-ITADKVTMVGVASACGYLGALDLAKWI-HGYIKKK 502

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           D    ++     +VDM  R G    A++    M
Sbjct: 503 D-IHFDMHLGTALVDMFARCGDPQSAMQVFNKM 534



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 181/358 (50%), Gaps = 20/358 (5%)

Query: 107 ECLSDARKMFDEMRERNVVSWT-----AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
           E L  A+K  +   E N +  T     ++I  +S     ++A+ +F +++     P+ FT
Sbjct: 82  ESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFT 141

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           F  VL++C  +     G Q+H  I+K  FE  ++V +SL+  Y + G I   R VF+ + 
Sbjct: 142 FPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMS 201

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           ER+VVS T++I GYA+ G  +EA+ LF ++   G+  N VT   V++A + L  L  G+Q
Sbjct: 202 ERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQ 261

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           V + +   E+    ++ N+L+DMY KCG++  +R++FD   ++ ++ +N ++  Y + G+
Sbjct: 262 VCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGL 321

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            REV+ +   M +    +PD +T L+ +S CS   ++D     +      ++G E     
Sbjct: 322 AREVLAVLGEMLKHGP-RPDRITMLSAVSACSE--LDDVSCGKWCHGYVLRNGLEGWDNV 378

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
              +++M  + G+             E    +   +L   RV +N  I  FV    ME
Sbjct: 379 CNAIINMYMKCGKQ------------EMACRVFDRMLNKTRVSWNSLIAGFVRNGDME 424


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 343/586 (58%), Gaps = 36/586 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M T G       Y  +L A     +L  G ++H  ++K      +Y+   LI  Y KC+ 
Sbjct: 111 MYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKS 170

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L +A+++ DE+  R+VVSW +M+S Y+Q     +AL L   M   + +PN+ T A++L +
Sbjct: 171 LKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                           +  +  ++ +YV                 + +F  L ++ V+S 
Sbjct: 231 ----------------VTNTTSDNVLYV-----------------KEMFLKLTKKSVISW 257

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I+ Y    + +EA+ L+ +++  G+  + V+  SVL A   L+AL  G++VH    R
Sbjct: 258 NVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAER 317

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            ++   ++L+N+LIDMY+KCG L  +R VF+ M  R V+SW +++  Y K G GR+ V +
Sbjct: 318 KKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAV 377

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  MR    + PDS+ +++VL+ CSH G+ D G   F+ + +C  G  P++EH+ CVVD+
Sbjct: 378 FAEMRNSG-LNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC--GITPKLEHFACVVDL 434

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAG++ EA  FI+ MP EP   + G LL ACRV+ N++IG     +L+ + PE++G Y
Sbjct: 435 LGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYY 494

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YA AGRW DV  +R +M+ K + K PG S +EL+  +HTF A D SHP  +++ 
Sbjct: 495 VLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIY 554

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            ++  L  K KE GY+P+    L+DV+EE KE  L  HSEKLA+ F +I T  G PIRV 
Sbjct: 555 EELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVT 614

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH  AK +SK+  R++ +RD +RFHH  EG CSCGDYW
Sbjct: 615 KNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 42/403 (10%)

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
           +L+  Y  C     AR +FDE+ ++NVV +  MI +Y       +AL ++  M      P
Sbjct: 59  KLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVP 118

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           + +T+  VL + + +    +G QIH  ++K   + ++YVG+ L+ MY K   + EA+ V 
Sbjct: 119 DMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +P RDVVS  +++S YAQ G   +A+EL R+++   +  N  T AS+L A++      
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVT------ 232

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
                                N+  D      ++ Y + +F  +++++VISWN M+  Y 
Sbjct: 233 ---------------------NTTSD------NVLYVKEMFLKLTKKSVISWNVMIAMYV 265

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIVDCKDGFE 396
            + M +E V L++ M E N V+PD V+ ++VL   ++G +    L    H+  + K    
Sbjct: 266 NNSMPKEAVVLYSQM-EANGVEPDVVSIVSVLP--AYGDLSALSLGRRVHKFAERKK-LL 321

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG--SLLGACRVHYNVDIGEFVG 454
           P +     ++DM  + G + +A      M F    +     S  G C    +  +  F  
Sbjct: 322 PNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDA-VAVFAE 380

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
            R   + P++     +L+   + AG  +D      LM E  +T
Sbjct: 381 MRNSGLNPDSIAFVSVLAAC-SHAGLLDDGRYYFNLMAECGIT 422



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 90/174 (51%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E       ++L A  +   L  G+RVH    +    P + L   LI  Y KC 
Sbjct: 279 QMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCG 338

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL DAR +F++M+ R+VVSWT++ISAY +     +A+ +F  M  S   P+   F +VL 
Sbjct: 339 CLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLA 398

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +C+ A   + G+   +L+ +      +   + ++D+  +AG+I EA G    +P
Sbjct: 399 ACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 106/197 (53%), Gaps = 2/197 (1%)

Query: 179 KQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           K++H  ++   +   +  VG  L+ +YA  G    AR +F+ + +++VV    +I  Y  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
             L ++A+ +++ +  +G + +  TY  VL A S   +L  G Q+H  VL+  +   + +
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N LI MY KC SL  +++V D +  R V+SWN+M+  Y+++G   + +EL   M   N 
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALN- 216

Query: 358 VKPDSVTYLAVLSGCSH 374
           +KP+  T  ++L   ++
Sbjct: 217 LKPNDCTMASLLPAVTN 233


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/542 (39%), Positives = 328/542 (60%), Gaps = 34/542 (6%)

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHS 183
           V+W A+IS +++     E+   F+ M R+   P   T+ +VL++C  G     LG Q+H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 184 LIIKSNFESHIYVGSSLLDMYA-------------------------------KAGRIHE 212
            ++ S     + V ++L+DMYA                               + G++ E
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F+ +PERD VS TA+I GY       EA+E+FR++Q   + ++  T  SV+TA + 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L AL  G+ V  ++ R  I     + N+LIDMYSKCGS+  +  VF  M  R   +W A+
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           ++G + +G   E +E+F+ M   ++  PD VT++ VL+ C+H G+ D+G   F  +++  
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSET-PDEVTFIGVLTACTHAGLVDKGREFFLSMIEAY 386

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
           +   P + HYGC++D+LGRAG++ EAL+ I  MP  P + I G+LL ACRVH N +IGE 
Sbjct: 387 N-IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 445

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           V +RL+E++PEN+  Y++LSN+YA   RWEDV R+R  + EK + K+PG S IE+D I+H
Sbjct: 446 VAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIH 505

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D+SHPM +E+ +K++ +       GY PD++ V  +V E++K+KVL  HSEKLA+
Sbjct: 506 EFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAI 565

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            F L+ +     IR++KNLR+C+DCHN  K +S++YGR+V +RD+ RFHH   G CSC D
Sbjct: 566 AFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKD 625

Query: 633 YW 634
           YW
Sbjct: 626 YW 627



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 39/357 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           G+   + ++MA  G       Y ++L+AC    R +  G +VH  ++ +   P + +   
Sbjct: 104 GESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENA 163

Query: 99  LIVFYNKCECLS-------------------------------DARKMFDEMRERNVVSW 127
           L+  Y +C  +                                +AR +FD M ER+ VSW
Sbjct: 164 LVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSW 223

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           TAMI  Y   A   EAL +F  M  S+   +EFT  +V+T+CA     E+G+ +   + +
Sbjct: 224 TAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSR 283

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
              +   +VG++L+DMY+K G I  A  VF+ +  RD  + TAII G A  G +EEAIE+
Sbjct: 284 QGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEM 343

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYS 306
           F ++       + VT+  VLTA +    +  G++   S +  + I   VV    +ID+  
Sbjct: 344 FHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLG 403

Query: 307 KCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHG---MGREVVELFNLMREENKV 358
           + G +T +    D   M+  + I W  +L     HG   +G  V E    +  EN +
Sbjct: 404 RAGKITEALDTIDQMPMTPNSTI-WGTLLAACRVHGNSEIGELVAERLLELDPENSM 459



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 45/334 (13%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG----FELGKQIHSLIIKSNFESHIYVG 197
           +A+  + RML     P+ +TF  +L + A A G        + +H+ +++     + +V 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 198 SSLLDMYAKAGRIHEARG-VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           SSL+  Y   G    AR  V EC      V+  A+ISG+ + G   E+   F  +   G 
Sbjct: 62  SSLVAAYTAGGDGAAARALVGEC---DTPVAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 257 ISNYVTYASVLTALS-GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
               VTY SVL+A   G   +  G QVH  V+   +   + ++N+L+DMY++C  +  + 
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN------------------- 356
           +VFD M  R+V+SW ++L G ++ G   E  +LF+ M E +                   
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 357 -----------KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
                       V  D  T ++V++ C+  G  + G  V   +   + G + +      +
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV--RVYMSRQGIKMDAFVGNAL 296

Query: 406 VDMLGRAGRVGEALEFIKNM----PFEPTAAILG 435
           +DM  + G +  AL+  K M     F  TA ILG
Sbjct: 297 IDMYSKCGSIERALDVFKGMHHRDKFTWTAIILG 330


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/585 (40%), Positives = 342/585 (58%), Gaps = 17/585 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPP----------VYLRTRLIVFYNKCECLSDA 112
            LL     Q  L  G  VHA+ I+ C              V L T L+  Y KC  L  A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT---EPNEFTFATVLTSC 169
           R++FD M  RN V+W+A+I  +   +   +A  LF  ML        P   + A+ L +C
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRAC 350

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A      +G+Q+H+L+ KS   + +  G+SLL MYAKAG I +A  +F+ +  +D VS +
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A++SGY Q G  EEA  +F+K+Q   +  +  T  S++ A S LAAL HG+  H  V+  
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 470

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S   + N+LIDMY+KCG +  SR+VF+ M  R ++SWN M+ GY  HG+G+E   LF
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M       PD VT++ +LS CSH G+   G   FH ++    G  P +EHY C+VD+L
Sbjct: 531 LEMNNLG-FPPDGVTFICLLSACSHSGLVIEGKHWFH-VMRHGYGLTPRMEHYICMVDLL 588

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            R G + EA EFI++MP      +  +LLGACRV+ N+D+G+ V + + E+ PE  GN+V
Sbjct: 589 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+Y++AGR+++   VR + K +   K PG SWIE++  LH F   D+SHP   E+  
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 708

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           ++  + V  K+ GY PD S VL D++EE+KEK L+ HSEKLA+ +G++   E   I V K
Sbjct: 709 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 768

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH   K +S +  R + +RD NRFHH   G CSCGD+W
Sbjct: 769 NLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 185/377 (49%), Gaps = 20/377 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC        G+ +H H I    +  +++ T L+  Y KC CL DA  +F  M  R++
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 125 VSWTAMISAYSQKA--HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           V+W AM++ Y+     H   A  L ++M      PN  T   +L   A       G  +H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 183 SLII----------KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +  I          KS     + +G++LLDMYAK G +  AR VF+ +P R+ V+ +A+I
Sbjct: 252 AYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH---GKQVHSHVLRF 289
            G+       +A  LF+ +  +G+   +++  S+ +AL   A+L H   G+Q+H+ + + 
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLC--FLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + + +   NSL+ MY+K G +  +  +FD M+ +  +S++A++ GY ++G   E   +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M+  N V+PD+ T ++++  CSH      G      ++    G   E      ++DM 
Sbjct: 430 KKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVI--IRGLASETSICNALIDMY 486

Query: 410 GRAGRVGEALEFIKNMP 426
            + GR+  + +    MP
Sbjct: 487 AKCGRIDLSRQVFNMMP 503



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 221/496 (44%), Gaps = 85/496 (17%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA--LNLFIRMLRSDTEPNEFTFATVL 166
           LS A  +FD++   +V ++  +I AYS  + +  A  L+L+ RMLR    PN +TF   L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C+       G+ IH   I +  ++ ++V ++LLDMY K   + +A  +F  +P RD+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 227 SCTAIISGYAQLGLDEEAIE--LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +  A+++GYA  G+   A+   L  ++Q+  +  N  T  ++L  L+   AL  G  VH+
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252

Query: 285 HVLRF----------EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           + +R           ++   V+L  +L+DMY+KCGSL Y+RRVFD M  R  ++W+A++ 
Sbjct: 253 YRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312

Query: 335 GYSKHGMGREVVELFNLMREE-----------------------------------NKVK 359
           G+       +   LF  M  +                                   + V 
Sbjct: 313 GFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVH 372

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D     ++LS  +  G+ D+ +A+F E+   KD        Y  +V    + GR  EA 
Sbjct: 373 ADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVS-----YSALVSGYVQNGRAEEAF 426

Query: 420 EFIKNMP---FEPTAAILGSLLGACR-----VHYNVDIGEFVGQRLM-EIEPENAGNYVI 470
              K M     EP AA + SL+ AC       H     G  + + L  E    NA     
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA----- 481

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           L ++YA  GR +   +V  +M  + +      SW       +T  A    H + +E +A 
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSRDIV-----SW-------NTMIAGYGIHGLGKEATA- 528

Query: 531 VKQLSVKFKEAGYVPD 546
              L ++    G+ PD
Sbjct: 529 ---LFLEMNNLGFPPD 541



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +A +   +M    +E       +L+ AC +   L+ G+  H  +I         +
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y KC  +  +R++F+ M  R++VSW  MI+ Y       EA  LF+ M     
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQI-----HSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            P+  TF  +L++C+ +     GK       H   +    E +I     ++D+ ++ G +
Sbjct: 539 PPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYI----CMVDLLSRGGFL 594

Query: 211 HEARGVFECLPER-DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            EA    + +P R DV    A++     Y  + L ++   + ++L  EG   N+V  +++
Sbjct: 595 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG-TGNFVLLSNI 653

Query: 267 LTA 269
            +A
Sbjct: 654 YSA 656


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 361/639 (56%), Gaps = 52/639 (8%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-- 87
           +  L  +G+  +AL   ++M   G+ +    Y + L AC    +L  G+++HA +I++  
Sbjct: 266 VSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLP 325

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
           C  P  Y+ + ++  Y KC C  +AR++F  +R+RN VSWT +I  + Q     E+L LF
Sbjct: 326 CIDP--YVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELF 383

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +M       ++F  AT+++ C+      L +Q+HSL +KS     + + +SL+ MYAK 
Sbjct: 384 NQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKC 443

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQL----------------------------- 238
           G +  A  +F  + ERD+VS T +++ Y+Q+                             
Sbjct: 444 GNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYI 503

Query: 239 --GLDEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
             G +E+ ++++  +  E  +I ++VTY ++    + + A   G Q+  H ++  +    
Sbjct: 504 QHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDT 563

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + N++I MYSKCG ++ +R++FD +S + ++SWNAM+ GYS+HGMG++ +E+F+ M ++
Sbjct: 564 SVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKK 623

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
              KPD ++Y+AVLS CSH G+   G   + +++       P +EH+ C+VD+L RAG +
Sbjct: 624 G-AKPDYISYVAVLSSCSHSGLVQEG-KFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNL 681

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA   I  MP +PTA + G+LL AC+ H N ++ E   + L +++  ++G Y++L+ +Y
Sbjct: 682 IEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIY 741

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A AG+  D  +VR+LM++K + K+PG SW+E+   +H F A D SHP    +  K+ +L 
Sbjct: 742 ADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELM 801

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
            K  + GYV             +  +  + HSEKLA+ FG++  P   PI ++KNLRIC 
Sbjct: 802 EKIAQLGYV-----------RTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICG 850

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +S V GR+  +RD  RFHH   G+CSCGDYW
Sbjct: 851 DCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 182/360 (50%), Gaps = 33/360 (9%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP V+ R  ++  Y K   +  A ++F+ M ER+VVSW  M+SA SQ   + EAL++ + 
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       +  T+ + LT+CA       GKQ+H+ +I+S      YV S+++++YAK G 
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             EAR VF  L +R+ VS T +I G+ Q G   E++ELF +++ E M  +    A++++ 
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL------------------ 311
            S    +   +Q+HS  L+      VV+ NSLI MY+KCG+L                  
Sbjct: 405 CSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSW 464

Query: 312 -----TYS--------RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
                 YS        R  FD MS R VI+WNAML  Y +HG   + +++++ M  E  V
Sbjct: 465 TGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD VTY+ +  GC+  G    G  +    V  K G   +      V+ M  + GR+ EA
Sbjct: 525 IPDWVTYVTLFRGCADMGANKLGDQITGHTV--KVGLILDTSVMNAVITMYSKCGRISEA 582



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 41/388 (10%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V     ++  Y K   LSDA ++F  M  R+V SW  ++S Y Q     +A+  F+ M
Sbjct: 93  PNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSM 152

Query: 151 LRS-DTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDM----- 203
            RS D+ PN FTF   + SC GA G+ E+  Q+  L+ K  F+    V + ++DM     
Sbjct: 153 RRSGDSLPNAFTFGCAMKSC-GALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 204 --------------------------YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
                                     YAK+  +  A  +FE +PERDVVS   ++S  +Q
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE--IPSYV 295
            G   EA+ +   +   G+  +  TY S LTA + L++LG GKQ+H+ V+R    I  YV
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              ++++++Y+KCG    +RRVF ++ +R  +SW  ++ G+ ++G   E +ELFN MR E
Sbjct: 332 A--SAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +  D      ++SGCS+    D  LA     +  K G    +     ++ M  + G +
Sbjct: 390 -LMTVDQFALATIISGCSN--RMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNL 446

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRV 443
             A     +M      +  G L    +V
Sbjct: 447 QNAESIFSSMEERDIVSWTGMLTAYSQV 474



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           E ++   + +++ YAK G + +A  +F  +P RDV S   ++SGY Q G   +A+E F  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 251 LQVEG-MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++  G  + N  T+   + +   L       Q+   + +F       +   ++DM+ +CG
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++ ++ + F  +   TV   N+ML GY+K       +ELF  M E      D V++  ++
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPER-----DVVSWNMMV 266

Query: 370 SGCSHGGMEDRGLAV 384
           S  S  G     L+V
Sbjct: 267 SALSQSGRAREALSV 281



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 40/250 (16%)

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR--------------------------- 315
           H  ++   + S V LQN+L+  Y  CG+L  +R                           
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 316 -----RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
                 +F  M  R V SWN ++ GY + G   + +E F  MR      P++ T+   + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            C   G  +  L +   +   K GF+ + +    +VDM  R G V  A +    +   PT
Sbjct: 171 SCGALGWHEVALQLLGLLT--KFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE-RPT 227

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRE 489
                S+L      Y VD        L E  PE +  ++ ++ +  + +GR  +   V  
Sbjct: 228 VFCRNSMLAGYAKSYGVD----HALELFESMPERDVVSWNMMVSALSQSGRAREALSVAV 283

Query: 490 LMKEKAVTKD 499
            M  + V  D
Sbjct: 284 DMHNRGVRLD 293


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 348/573 (60%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+ NA  +   L  G+ V+  +        V +    +  +     L DAR++F++M +R
Sbjct: 211 TVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDR 270

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VV+W  +I+ Y Q  +  EA+ LF R+ +   + N+ TF  +L           GK IH
Sbjct: 271 DVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIH 330

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+ ++ ++    V ++L+ +Y +     +A  +F  +  +DV++ T +   YAQ G  +
Sbjct: 331 ELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRK 390

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LF+++Q+EG      T  +VL   + LAAL  G+Q+HSH++       +V++ +LI
Sbjct: 391 EALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALI 450

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MY KCG +  +  VF+ M++R ++ WN+ML  Y++HG   E ++LFN M+ +  VK D+
Sbjct: 451 NMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDG-VKADA 509

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V++++VLS  SH G    G   F  ++       P  E YGCVVD+LGRAGR+ EA++ +
Sbjct: 510 VSFVSVLSALSHSGSVTDGYQYFVAMLQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIV 568

Query: 423 KNMP-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
             +    P   +  +LLGACR H   D  +   ++++E +P ++G YV+LSN+YA+AG W
Sbjct: 569 LKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDW 628

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V R+R+LM+ + V K+PGRS IE+   +H F   DRSHP R  + A++  L+ + + A
Sbjct: 629 DGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAA 688

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD   +L+DV++E+KE +L  HSE+LA+ FGLI TP G P+RVIKNLR+C DCH   
Sbjct: 689 GYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTAT 748

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++SK+ GR++ +RD +RFH+  +G CSC DYW
Sbjct: 749 KYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 224/442 (50%), Gaps = 6/442 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +LNAC +  +L+ G  +H  +++  +   V++ T LI  YNKC  +  A   F  + 
Sbjct: 108 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 167

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VVSWTAMI+A  Q      A  L+ RM      PN+ T  TV  +         GK 
Sbjct: 168 HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKF 227

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           ++ L+     ES + V +S ++M+  AG + +AR +FE + +RDVV+   +I+ Y Q   
Sbjct: 228 VYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNEN 287

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LF +LQ +G+ +N +T+  +L   + L +L  GK +H  V         V+  +
Sbjct: 288 FGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATA 347

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ +Y +C +   + ++F +M  + VI+W  M V Y+++G  +E ++LF  M+ E + +P
Sbjct: 348 LMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR-RP 406

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            S T +AVL  C+H     +G  +   I++ +  F  E+     +++M G+ G++ EA+ 
Sbjct: 407 TSATLVAVLDTCAHLAALQKGRQIHSHIIENR--FRMEMVVETALINMYGKCGKMAEAMS 464

Query: 421 FIKNMPFEPTAAILGSLLGACRVH--YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
             + M  +    +  S+LGA   H  Y+  +  F   +L  ++ +      +LS L  S 
Sbjct: 465 VFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSG 523

Query: 479 GRWEDVTRVRELMKEKAVTKDP 500
              +       ++++ ++T  P
Sbjct: 524 SVTDGYQYFVAMLQDFSITPTP 545



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 228/478 (47%), Gaps = 56/478 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL  C + + +  G+RVH H+    +     +   LI  Y +C  + +A+++F+ +  +
Sbjct: 9   ALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 68

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +WT MI  Y Q+     AL +F +M   D  P + T+  +L +CA     + G +IH
Sbjct: 69  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIH 128

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I++  FE  ++VG++L++MY K G +  A   F+ L  RDVVS TA+I+   Q     
Sbjct: 129 GQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFA 188

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A  L+R++Q++G++ N +T  +V  A      L  GK V+  V    + S V + NS +
Sbjct: 189 LARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAV 248

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +M+   G L  +RR+F++M +R V++WN ++  Y ++    E V LF  ++++  VK + 
Sbjct: 249 NMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG-VKAND 307

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG------ 416
           +T++ +L+  +      +G  V HE+V  + G++ +      ++ + GR    G      
Sbjct: 308 ITFVLMLNVYTSLTSLAKG-KVIHELVK-EAGYDRDAVVATALMSLYGRCEAPGQAWKIF 365

Query: 417 -------------------------EALEFIKNMPFE---PTAAILGSLLGAC------- 441
                                    EAL+  + M  E   PT+A L ++L  C       
Sbjct: 366 VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQ 425

Query: 442 ---RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
              ++H ++    F     ME+  E A     L N+Y   G+  +   V E M ++ +
Sbjct: 426 KGRQIHSHIIENRF----RMEMVVETA-----LINMYGKCGKMAEAMSVFEKMAKRDI 474



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 25/368 (6%)

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+   F  +L  C+ A   + G+++H  +    FE +  V   L+ MYA+ G + EA+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VFE L  +DV + T +I  Y Q G  + A+ +F ++Q E ++   VTY ++L A +   +
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G ++H  +L+      V +  +LI+MY+KCGS+  +   F  +  R V+SW AM+  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
             +H        L+  M+ +  V P+ +T   V +          G  V+  +       
Sbjct: 181 CVQHDQFALARWLYRRMQLDG-VVPNKITLYTVFNAYGDPNYLSEGKFVYGLV--SSGVM 237

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV-- 453
           E ++      V+M G AG +G+A    ++M       +  +++    V  N + GE V  
Sbjct: 238 ESDVRVMNSAVNMFGNAGLLGDARRLFEDMV--DRDVVTWNIVITLYVQ-NENFGEAVRL 294

Query: 454 -GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD------------- 499
            G+   +    N   +V++ N+Y S         + EL+KE    +D             
Sbjct: 295 FGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGR 354

Query: 500 ---PGRSW 504
              PG++W
Sbjct: 355 CEAPGQAW 362


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 367/618 (59%), Gaps = 21/618 (3%)

Query: 22  TVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           ++P   P+P+      SN +  K+L +   + L  R +  + +L              +H
Sbjct: 6   SLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLP-------------IH 52

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141
           A +I+  +    ++   L+   +KC  +  A ++F      NV  +TA+I  +    + F
Sbjct: 53  AQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYF 112

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +A+ L+ RML     P+ +  A++L +C        G+++HS  +K    S+  V   ++
Sbjct: 113 DAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIM 172

Query: 202 DMYAKAGRIHEARGVFECLPE----RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++Y K G + +AR VFE +PE    +D V  TA+I G+ +      A+E FR +Q E + 
Sbjct: 173 ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 232

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N  T   VL+A S L AL  G+ VHS++ +FEI   + + N+LI+MYS+CGS+  ++ V
Sbjct: 233 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 292

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD M +R VI++N M+ G S +G  R+ +ELF +M    +++P +VT++ VL+ CSHGG+
Sbjct: 293 FDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGR-RLRPTNVTFVGVLNACSHGGL 351

Query: 378 EDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            D G  +FH +   +D G EP+IEHYGC+VD+LGR GR+ EA + I+ M   P   +LG+
Sbjct: 352 VDFGFKIFHSMT--RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 409

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL AC++H N+++GE V + L +    ++G YV+LS++YAS+G+W++  +VR  MKE  +
Sbjct: 410 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K+PG S IE++  +H F   D  HP +E +  K+++L+   +  GY P+   VL D+++
Sbjct: 470 QKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIED 529

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
            +KE  L  HSE+LA+ +GLI T     IRV+KNLR+C DCH+  K ++K+  RKV +RD
Sbjct: 530 GEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRD 589

Query: 617 KNRFHHIVEGTCSCGDYW 634
           +NRFH+   G CSCGDYW
Sbjct: 590 RNRFHYFENGACSCGDYW 607


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 347/582 (59%), Gaps = 3/582 (0%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL      + T+L        L  G++VH  ++       V++   L+ FY+KC+CL + 
Sbjct: 236 GLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEM 294

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           +K+F EM ER+ VS+  MI+ Y+    +   L LF  M     +     +A++L+     
Sbjct: 295 KKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSV 354

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
               +GKQIH+ ++     S   VG++L+DMY+K G +  A+  F    ++  VS TA+I
Sbjct: 355 PHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMI 414

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           +G  Q G  EEA++LF  ++  G+  +  T++S + A S LA +G G+Q+HS+++R    
Sbjct: 415 TGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHM 474

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           S V   ++L+DMY+KCG L  + + FD M ER  ISWNA++  Y+ +G  +  +++F  M
Sbjct: 475 SSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGM 534

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
                 KPDSVT+L+VLS CSH G+ +  +  F E+++ + G  P  EHY CV+D LGR 
Sbjct: 535 LCYG-FKPDSVTFLSVLSACSHNGLAEECMKYF-ELMEYEYGISPWKEHYSCVIDTLGRV 592

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GR  +  E +  MPFE    I  S+L +CR H N D+     ++L  +   +A  YVILS
Sbjct: 593 GRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILS 652

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N++A AG+WED   V+++M+++ + K+ G SW+E+   +++F ++D+++PM  E+  +++
Sbjct: 653 NIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELE 712

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +L  +  + GY PD SC L  VD++ K + L  HSE+LA+ F LI TP G PIRV+KNL 
Sbjct: 713 RLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLS 772

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            CVDCH+  K +SK+  R + +RD +RFHH  +G CSCGDYW
Sbjct: 773 ACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 41/313 (13%)

Query: 82  AHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN------------------ 123
           A M+KT + P  Y    L+        L+ AR +FD+M  RN                  
Sbjct: 23  ARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQL 82

Query: 124 ----------------VVSWTAMISAYSQK--AHSFEALNLFIRMLRSDTEPNEFTFATV 165
                            V+WT MI A++    A + +A++LF  MLR    P+  T ATV
Sbjct: 83  SAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATV 142

Query: 166 LT---SCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L    +  G     +   +H   +K     S++ V ++LLD Y K G +  AR VF+ +P
Sbjct: 143 LNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMP 202

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
            RD V+  A++ G ++ G   EA++LF  ++ +G+ +   T+++VLT  +G+  L  G+Q
Sbjct: 203 HRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQ 262

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           VH  V R    S V + NSL+D YSKC  L   +++F  M ER  +S+N M+ GY+ +  
Sbjct: 263 VHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRC 321

Query: 342 GREVVELFNLMRE 354
              V+ LF  M+ 
Sbjct: 322 ASIVLRLFREMQS 334



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 11/215 (5%)

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RM+++  +P  +    +L S   +       Q  +L  +    ++ +  + +L  Y+++G
Sbjct: 24  RMVKTGFDPATYRLNLLLHSLISSGRL---AQARALFDQMPHRNNAFSLNRMLSGYSRSG 80

Query: 209 RIHEARGVFECLPE--RDVVSCTAIISGYAQL--GLDEEAIELFRKLQVEGMISNYVTYA 264
           ++  A  +F   P   RD V+ T +I  +A        +A+ LFR +  EG+  + VT A
Sbjct: 81  QLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVA 140

Query: 265 SVLT---ALSGLAALGHGKQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           +VL    A  G AA      +H   L+  +  S VV+ N+L+D Y K G L  +RRVF  
Sbjct: 141 TVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQE 200

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           M  R  +++NAM++G SK G   E ++LF  MR +
Sbjct: 201 MPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRK 235


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 340/570 (59%), Gaps = 2/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           + +C     L  G+ V A+  K  +    ++   LI  Y  C  +  A  +F  ++ + V
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGV 237

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           ++W AMI+ Y +     E + +F  ML      +E T  +V T+C       LG+ I   
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
             +        + ++L+DMYAK G + +AR +F+ +  RDVV+ +A+ISGY Q     EA
Sbjct: 298 AEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREA 357

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + +F ++Q   +  N VT  SVL+A + L AL  GK VHS++ R ++P  V+L  +L+D 
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDF 417

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCG +  + + F++M  R   +W A++ G + +G  RE +ELF+ M E N ++P  VT
Sbjct: 418 YAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEAN-IEPTDVT 476

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ VL  CSHG + + G   F  +     G  P IEHYGC+VD+LGRAG + EA +FI+N
Sbjct: 477 FIGVLLACSHGCLVEEGRRHFTSMTQ-DYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRN 535

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP EP A +  +LL AC VH NV+IGE   ++++ ++P ++GNY++LSN YAS G+W++ 
Sbjct: 536 MPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNA 595

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
             VR+ MKEK V K PG S IEL+  +  F A D  HP   E+  KV ++    K  GY+
Sbjct: 596 AMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYI 655

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P+ +    DVDE +K+  +  HSEKLA+ FGL+ +  GA IR+ KNLR+C+DCH+  K +
Sbjct: 656 PNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLI 715

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SKVY R++ +RD+NRFHH  +G CSC DYW
Sbjct: 716 SKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT--EPNEFTFATVLTSCAGAFGFELGK 179
           R+  S+  +I ++ +  H  +AL+LF+ ML  DT   P++ T A  + SC+      +G+
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEML-DDTAVSPDQHTVANTVKSCSRMCDLSVGR 191

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            + +   K  F    +V +SL+ MYA  G +  A  +F  +  + V++  A+I+GY + G
Sbjct: 192 GVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNG 251

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             +E +E+F+ +       + VT  SV TA   L     G+ +  +     +     L  
Sbjct: 252 DWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLAT 311

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+DMY+KCG L  +RR+FD M  R V++W+AM+ GY++    RE + +FN M +  +V 
Sbjct: 312 ALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM-QGTEVN 370

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT ++VLS C+  G  + G  V H  +  KD     +     +VD   + G + +A+
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWV-HSYIRRKD-LPLTVILGTALVDFYAKCGCIKDAV 428

Query: 420 EFIKNMPFEPT 430
           +  ++MP   T
Sbjct: 429 KAFESMPVRNT 439



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 10/213 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++ +      V L T L+ FY KC C+ DA K F+ M  R
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           N  +WTA+I   +    S EAL LF  ML ++ EP + TF  VL +C+     E G++  
Sbjct: 438 NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHF 497

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQ 237
            S+         I     ++D+  +AG I EA      +P E + V   A++S    +  
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN 557

Query: 238 LGLDEEAIELFRKLQVEGMISNYV----TYASV 266
           + + EEA++    L       NY+    TYASV
Sbjct: 558 VEIGEEALKQIVPLD-PCHSGNYILLSNTYASV 589



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 12/210 (5%)

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHG 279
           P R   S   +I  + + G  E+A+ LF ++  +  +S +  T A+ + + S +  L  G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 280 KQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           + V ++  +  F +  +V+  NSLI MY+ CG +  +  +F  +  + VI+WNAM+ GY 
Sbjct: 191 RGVQAYAFKRGFMVDQFVL--NSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYV 248

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG--LAVFHEIVDCKDGF 395
           K+G  +EVVE+F  M E  +   D VT L+V + C   G  + G  +A + E    + G 
Sbjct: 249 KNGDWKEVVEMFKGMLEV-RAPFDEVTLLSVATACGRLGDANLGQWIAEYAE----EKGM 303

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                    +VDM  + G + +A      M
Sbjct: 304 LRSRNLATALVDMYAKCGELDKARRLFDRM 333


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 356/579 (61%), Gaps = 10/579 (1%)

Query: 64  LLNACVNQRTLRGG-----QRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMF 116
           +L  C++   L G      +++HA  I+    P  P + +  +    +    +S A ++F
Sbjct: 33  ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGF 175
           ++++  N+ +W  MI  +++  +   A+ LF +M   S   P+  TF  +  + A     
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LG+ IHS+++++ F+S  +V +SL+ MY+  G +  A  VFE +  RD V+  ++I+G+
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGF 212

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           A  G+  EA+ L+R++  EG+  +  T  S+L+A   L AL  G++VH ++++  +    
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              N+L+D+YSKCG+   +++VFD M ER+V+SW +++VG + +G+G E ++LF  + E 
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL-ER 331

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +KP  +T++ VL  CSH GM D G   F  + + + G  P IEH+GC+VD+L RAG+V
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKE-EYGILPRIEHHGCMVDLLCRAGKV 390

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
           G+A ++I+NMP  P A I  +LLGAC +H ++++GE     +  +E  ++G++V+LSNLY
Sbjct: 391 GDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLY 450

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           AS  RW DV  VR++M  K V K PG S +EL   ++ F   DRSHP  EE  A + +++
Sbjct: 451 ASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKIT 510

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
              K  GYVP    VL D++EE+KE  L  H+EK+A+ F L+ TP G PIR++KNLR+C 
Sbjct: 511 QLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCA 570

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +SKV+ R++ +RD++RFHH  +G+CSC DYW
Sbjct: 571 DCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL    EM + G+E       +LL+ACV    L  G+RVH +M+K       + 
Sbjct: 215 NGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y+KC    DA+K+FDEM ER+VVSWT++I   +      EAL LF  + R   
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 156 EPNEFTFATVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           +P+E TF  VL +C+       G   F   K+ + ++ +   E H      ++D+  +AG
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR--IEHH----GCMVDLLCRAG 388

Query: 209 RIHEARGVFECLP 221
           ++ +A      +P
Sbjct: 389 KVGDAYDYIRNMP 401


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/571 (42%), Positives = 337/571 (59%), Gaps = 40/571 (7%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++  Y K   L  AR+ FDEM ER+VVSW AM SAY+QK    EALNLF +ML     
Sbjct: 196 TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGIT 255

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P++ T+   ++SC+      L   I  +I + +   + +V ++LLDM+AK G +  AR +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 217 FECL--------------------------------PERDVVSCTAIISGYAQLGLDEEA 244
           F+ L                                P+RDVVS  ++I+GYAQ G    +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 245 IELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           IELF+++     +  + VT ASVL+A   + AL     V   V    I   +   NSLI 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+  + R+F  M  R V+S+N ++ G++ +G G+E ++L   M EE  ++PD V
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG-IEPDHV 494

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           TY+ VL+ CSH G+ + G  VF  I        P ++HY C+VD+LGRAG + EA   I+
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQ------APTVDHYACMVDLLGRAGELDEAKMLIQ 548

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +MP +P A + GSLL A R+H  V +GE    +L E+EP+N GNYV+LSN+YAS GRWED
Sbjct: 549 SMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWED 608

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V RVRE+MK+  + K  G SW+E    +H F   DRSH   +++   + +L  K K  G+
Sbjct: 609 VKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGF 668

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           V D SC L DV+EE+KE++L  HSEKLA+ F L+ +  G  IRV+KNLRIC+DCH   K 
Sbjct: 669 VADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKM 728

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+ GR++ +RD NRFH   EG CSC DYW
Sbjct: 729 ISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 55/321 (17%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL----SDARKM 115
           E   L +   N R LR   + H H++        Y  + L++    C  L    +    +
Sbjct: 3   ELVALASKISNIRQLR---QFHGHLVHNSLHSHNYWVSLLLI---NCTRLHAHPAYVDSI 56

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           F      +   ++ M+  YS+     + ++LF      +  P  F +   L   AG    
Sbjct: 57  FTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVY-IYLIKLAG---- 111

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           + G   H+ ++K       ++ +++LDMYAK G++  AR +FE + ER +    ++ISG 
Sbjct: 112 KSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            + G + EA+ LF  +       N +T+ S++T                           
Sbjct: 172 WKSGNETEAVVLFNMMPAR----NIITWTSMVTG-------------------------- 201

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
                    Y+K G L  +RR FD M ER+V+SWNAM   Y++    +E + LF+ M EE
Sbjct: 202 ---------YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEE 252

Query: 356 NKVKPDSVTYLAVLSGCSHGG 376
             + PD  T++  +S CS  G
Sbjct: 253 G-ITPDDTTWVVTISSCSSIG 272



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 17/214 (7%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE----ARGVFECLPERDVVSCTAIISG 234
           +Q H  ++ ++  SH Y  S LL       R+H        +F   P  D    + ++  
Sbjct: 18  RQFHGHLVHNSLHSHNYWVSLLL---INCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKY 74

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y+++G   + + LF+      +      Y   L  L+G +    G   H++VL+      
Sbjct: 75  YSRMGAHNQVVSLFKCTHSLNLRPQPFVYI-YLIKLAGKS----GNMFHAYVLKLGHIDD 129

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
             ++N+++DMY+K G +  +R +F+ M+ERT+  WN+M+ G  K G   E V LFN+M  
Sbjct: 130 HFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
            N      +T+ ++++G +  G  +     F E+
Sbjct: 190 RN-----IITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/594 (39%), Positives = 354/594 (59%), Gaps = 8/594 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNA---CVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIV 101
           L +M   G ++R +E  T+LNA   C  +  L   + +H + +K  +      +    + 
Sbjct: 378 LRQMLAGGGDLRADEV-TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVA 436

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC  LS A ++F  +R + V SW A+I  YSQ +    +L+ + +M  S   P+ FT
Sbjct: 437 SYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFT 496

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             ++L++C+     +LGK++H LII++  E   +V  SLL +Y   G +  A  +F+ + 
Sbjct: 497 VCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAME 556

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           ++ +VS   +++GY Q G  E A+ LFR++ + G+    ++  SV  A S L +L  G++
Sbjct: 557 DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGRE 616

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
            H + L+  +     +  S+IDMY+K GS+  S +VF+ + ER+V SWNAM++GY  HG 
Sbjct: 617 AHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGR 676

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            +E ++LF  M+      PD +T+L VL+ C+H G+   GL    ++     G  P ++H
Sbjct: 677 AKEAIKLFEEMQRTGHC-PDELTFLGVLTACNHSGLVHEGLTYLDQM-KTLFGMNPTLKH 734

Query: 402 YGCVVDMLGRAGRVGEALEF-IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           Y CV+DML RAG++ EAL+   + M  EP   I   LL +CR+H N+++GE +  +L   
Sbjct: 735 YACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVS 794

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           EPE   NYV+LSNLYA +G+W++V +VR+ MKE ++ KD G SWIEL+  + +F A + S
Sbjct: 795 EPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESS 854

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
               EE+ +    L  +  + GY PD S V +D+ EE+K + L GHSEKLA+T+GLI T 
Sbjct: 855 LDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTS 914

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           EG  +RV KNLRICVDCHN AK +SKV  R++ +RD  RFHH   G CSCGDYW
Sbjct: 915 EGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 159/287 (55%), Gaps = 12/287 (4%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RS 153
           L TR+I  Y+ C    D+R +FD +R++N+  W A+IS+YS+       L +F++M+  S
Sbjct: 119 LCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITES 178

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
              P+ FTF  V+ +CAG    ++G  +H L++K+     ++V ++L+  Y   G + +A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE----GMISNYVTYASVLTA 269
             VF+ +PER++VS  ++I  ++  GL EE   L  ++  +        +  T A+VL  
Sbjct: 239 LRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPV 298

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +    +G GK VH   ++  +   VV+ N+L+DMYSKCG +  ++ +F   + + V+SW
Sbjct: 299 CARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSW 358

Query: 330 NAMLVGYSKHGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSGC 372
           N M+ G+S  G   ++ + F+L+R+       ++ D VT L  +  C
Sbjct: 359 NTMVGGFSAAG---DIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 146/298 (48%), Gaps = 15/298 (5%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A  +M + GL        +LL+AC   ++L+ G+ VH  +I+       ++   L+  Y 
Sbjct: 481 AYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYI 540

Query: 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
            C  LS A  +FD M ++ +VSW  M++ Y Q      AL+LF +M+    +P E +  +
Sbjct: 541 HCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMS 600

Query: 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
           V  +C+      LG++ H   +K   E + ++  S++DMYAK G + E+  VF  L ER 
Sbjct: 601 VFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERS 660

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           V S  A++ GY   G  +EAI+LF ++Q  G   + +T+  VLTA +      H   VH 
Sbjct: 661 VASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACN------HSGLVHE 714

Query: 285 HVLRFEIPSYVVLQNS-------LIDMYSKCGSLTYSRRV-FDNMSERTVIS-WNAML 333
            +   +    +   N        +IDM  + G L  + ++  + MSE   +  WN +L
Sbjct: 715 GLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLL 772



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   +I MYS CGS   SR VFD + ++ +  WNA++  YS++ +   V+E+F  M  E
Sbjct: 118 VLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITE 177

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           + + PD+ T+  V+  C+       GLAV   +V  K     ++     +V   G  G V
Sbjct: 178 SGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVV--KTRLVEDVFVSNALVSFYGTNGSV 235

Query: 416 GEALEFIKNMP 426
            +AL   K MP
Sbjct: 236 SDALRVFKIMP 246


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 349/609 (57%), Gaps = 34/609 (5%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           RF  + +LL A         G  +H    K  +    +++T LI  Y  C  + DAR +F
Sbjct: 121 RFS-FPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           D+M   + V+W  +I  Y Q  H  +AL LF  M  SD +P+     TVL++C  A    
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+ IH  +  + +    ++ ++L++MYA  G +  AR +++ L  + ++  TA++SGYA
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA 299

Query: 237 QLGL-------------------------------DEEAIELFRKLQVEGMISNYVTYAS 265
           +LG+                                +EA++LF ++  +  + + +T  S
Sbjct: 300 KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLS 359

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           V++A S + AL     +H++V R      + + N+LIDMY+KCG+L  +R VF+NM  + 
Sbjct: 360 VISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKN 419

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           VISW++M+  ++ HG     ++LF  M+E N ++P+ VT++ VL  C H G+ + G  +F
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVN-IEPNGVTFIGVLYACGHAGLVEEGEKLF 478

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
             +++ + G  P  EHYGC+VD+  RA  + +A+E I+ MPF P   I GSL+ AC+VH 
Sbjct: 479 SSMIN-EHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
             ++GEF  +RL+E+EP++ G  V+LSN+YA   RW DV  +R+ M  K ++K+   S I
Sbjct: 538 EAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRI 597

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           E++  +H F  +DR H   +E+  K+ ++  K K  GY P  S +L D++EE K++++L 
Sbjct: 598 EINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLW 657

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSEKLA+ +GLI     + IR++KNLRIC DCH+F K VSKVY  ++ +RD+ RFHH   
Sbjct: 658 HSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSG 717

Query: 626 GTCSCGDYW 634
           G CSC DYW
Sbjct: 718 GICSCRDYW 726



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 174/361 (48%), Gaps = 47/361 (13%)

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
           H+  A+N F          + F+F ++L + +    F  G +IH L  K  F    ++ +
Sbjct: 109 HNLRAINAF--------ALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQT 160

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
            L+ MYA   RI +AR +F+ +   D V+   II GY Q G  ++A+ LF  ++   M  
Sbjct: 161 GLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKP 220

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
           + V   +VL+A      L +G+ +H  V    + I S+  LQ +LI+MY+ CG++  +R+
Sbjct: 221 DSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSH--LQTALINMYANCGAMDLARK 278

Query: 317 -------------------------------VFDNMSERTVISWNAMLVGYSKHGMGREV 345
                                          +FD M ER ++ W+AM+ GY++    +E 
Sbjct: 279 IYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEA 338

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           ++LF+ M ++  V PD +T L+V+S CSH G   +   + H  VD + GF   +     +
Sbjct: 339 LKLFDEMLQKRSV-PDQITMLSVISACSHVGALAQANWI-HTYVD-RSGFGRALSVNNAL 395

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +DM  + G + +A E  +NMP +   +   S++ A  +H N D    + +R+ E+  E  
Sbjct: 396 IDMYAKCGNLVKAREVFENMPRKNVIS-WSSMINAFAMHGNADSAIKLFRRMKEVNIEPN 454

Query: 466 G 466
           G
Sbjct: 455 G 455


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/656 (35%), Positives = 377/656 (57%), Gaps = 52/656 (7%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVN 70
           ++S+TF     ++P   P+P+      SN +  K+L +   + L  R +  + +L     
Sbjct: 15  YASMTFAA---SLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLP---- 67

Query: 71  QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
                    +HA +I+  +    ++   L+   +KC  +  A ++F      NV  +TA+
Sbjct: 68  ---------IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTAL 118

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I  +    + F+A+ L+ RML     P+ +  A++L +C        G+++HS  +K   
Sbjct: 119 IDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGL 178

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA------ 244
            S+  V   ++++Y K G + +AR VFE +PE DVV+ T +IS Y+  GL EEA      
Sbjct: 179 SSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSR 237

Query: 245 -------------------------IELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
                                    +E FR +Q E +  N  T   VL+A S L AL  G
Sbjct: 238 VRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 297

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           + VHS++ +FEI   + + N+LI+MYS+CGS+  ++ VFD M +R VI++N M+ G S +
Sbjct: 298 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 357

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPE 398
           G  R+ +ELF +M    +++P +VT++ VL+ CSHGG+ D G  +FH +   +D G EP+
Sbjct: 358 GKSRQAIELFRVMIGR-RLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT--RDYGVEPQ 414

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           IEHYGC+VD+LGR GR+ EA + I+ M   P   +LG+LL AC++H N+++GE V + L 
Sbjct: 415 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLE 474

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           +    ++G YV+LS++YAS+G+W++  +VR  MKE  + K+PG S IE++  +H F   D
Sbjct: 475 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 534

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP +E +  K+++L+   +  GY P+   VL D+++ +KE  L  HSE+LA+ +GLI 
Sbjct: 535 LRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLIS 594

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           T     IRV+KNLR+C DCH+  K ++K+  RKV +RD+NRFH+   G CSCGDYW
Sbjct: 595 TEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/637 (34%), Positives = 363/637 (56%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   ++M + G+ +    Y + L AC    +LR G+++HA +I+   
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 321

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               Y+ + L+  Y K  C  +A+ +F+ + +RN V+WT +IS + Q     E++ LF +
Sbjct: 322 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 381

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG+Q+HSL +KS     + V +SL+ MYAK   
Sbjct: 382 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 441

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  +F  + E+D+VS T++I+ Y+Q+G   +A E F  +  + +I+           
Sbjct: 442 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQH 501

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + L A   G Q+    ++  +     +
Sbjct: 502 GAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSV 561

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I MYSKCG +  +R+VFD ++ + ++SWNAM+ GYS+HGMG++ +E+F+ + +   
Sbjct: 562 ANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG- 620

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+   G   F +++       P +EH+ C+VD+LGRAG + E
Sbjct: 621 AKPDYISYVAVLSGCSHSGLVQEGKFYF-DMMKRAHNISPGLEHFSCMVDLLGRAGHLTE 679

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I +MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++++ +YA 
Sbjct: 680 AKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYAD 739

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  ++R+LM++K + K+PG SW+E+D  +H F A D SHP    +  K+ +L  K
Sbjct: 740 AGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEK 799

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV          D  + E   + HSEKLA+ FGL+  P   PI ++KNLRIC DC
Sbjct: 800 IARLGYVR--------TDSTRSE---IHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDC 848

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V GR+  +RD  RFHH   G+CSCGDYW
Sbjct: 849 HTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 7   QSRAF--SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDT- 63
           QSR +  S  TF     +  S+P        + S G L    + +  L +  +F+  D  
Sbjct: 134 QSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDS 193

Query: 64  -LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +  A V+     G   + + +      P ++ R  ++  Y K   +  A ++FD M ER
Sbjct: 194 EVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER 253

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSW  M+SA SQ     EAL++ + M       +  T+ + LT+CA       GKQ+H
Sbjct: 254 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH 313

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +I++      YV S+L+++YAK+G   EA+GVF  L +R+ V+ T +ISG+ Q G   
Sbjct: 314 AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFT 373

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E++ELF +++ E M  +    A++++       L  G+Q+HS  L+      VV+ NSLI
Sbjct: 374 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLI 433

Query: 303 DMYSKC-------------------------------GSLTYSRRVFDNMSERTVISWNA 331
            MY+KC                               G++  +R  FD MSE+ VI+WNA
Sbjct: 434 SMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 493

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ML  Y +HG   + + ++ +M  E  V+PD VTY+ +  GC+  G    G  +    V  
Sbjct: 494 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV-- 551

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           K G   +      V+ M  + GR+ EA
Sbjct: 552 KVGLIIDTSVANAVITMYSKCGRILEA 578



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 182/359 (50%), Gaps = 42/359 (11%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           +  +GL       +TLL+A ++   L   +R+   ++     P V     ++  Y K   
Sbjct: 50  LVAVGLASAVFLQNTLLHAYLSCGALSDARRL---LLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLT 167
           LSDA ++F  M  R+V SW  ++S Y Q      +L  F+ M RS D+ PN FT A  + 
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 168 SCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG----------RIHE---- 212
           SC GA G+  L  Q+ +++ K + +    V ++L+DM+ + G          RI E    
Sbjct: 167 SC-GALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMF 225

Query: 213 -----------------ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
                            A  +F+ +PERDVVS   ++S  +Q G   EA+++   +Q +G
Sbjct: 226 CRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 285

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTY 313
           +  +  TY S LTA + L++L  GKQ+H+ V+R    I  YV   ++L+++Y+K G    
Sbjct: 286 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKE 343

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           ++ VF+++ +R  ++W  ++ G+ ++G   E VELFN MR E  +  D      ++SGC
Sbjct: 344 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE-LMTLDQFALATLISGC 401



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 3/154 (1%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V+  N +++ Y+K G L+ +  +F  M  R V SWN ++ GY +       +E F  M  
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
                P++ T    +  C   G     L +   +       + E+     +VDM  R G 
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVA--AALVDMFVRCGA 208

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V  A      +  EPT     S+L      Y VD
Sbjct: 209 VDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD 241


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/637 (34%), Positives = 363/637 (56%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   ++M + G+ +    Y + L AC    +LR G+++HA +I+   
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               Y+ + L+  Y K  C  +A+ +F+ + +RN V+WT +IS + Q     E++ LF +
Sbjct: 302 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 361

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG+Q+HSL +KS     + V +SL+ MYAK   
Sbjct: 362 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 421

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  +F  + E+D+VS T++I+ Y+Q+G   +A E F  +  + +I+           
Sbjct: 422 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQH 481

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + L A   G Q+    ++  +     +
Sbjct: 482 GAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSV 541

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I MYSKCG +  +R+VFD ++ + ++SWNAM+ GYS+HGMG++ +E+F+ + +   
Sbjct: 542 ANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG- 600

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+   G   + +++       P +EH+ C+VD+LGRAG + E
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEG-KFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTE 659

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I +MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++++ +YA 
Sbjct: 660 AKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYAD 719

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  ++R+LM++K + K+PG SW+E+D  +H F A D SHP    +  K+ +L  K
Sbjct: 720 AGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEK 779

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV          D  + E   + HSEKLA+ FGL+  P   PI ++KNLRIC DC
Sbjct: 780 IARLGYVR--------TDSTRSE---IHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDC 828

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V GR+  +RD  RFHH   G+CSCGDYW
Sbjct: 829 HTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 7   QSRAF--SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDT- 63
           QSR +  S  TF     +  S+P        + S G L    + +  L +  +F+  D  
Sbjct: 114 QSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDS 173

Query: 64  -LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +  A V+     G   + + +      P ++ R  ++  Y K   +  A ++FD M ER
Sbjct: 174 EVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER 233

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSW  M+SA SQ     EAL++ + M       +  T+ + LT+CA       GKQ+H
Sbjct: 234 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH 293

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +I++      YV S+L+++YAK+G   EA+GVF  L +R+ V+ T +ISG+ Q G   
Sbjct: 294 AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFT 353

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E++ELF +++ E M  +    A++++       L  G+Q+HS  L+      VV+ NSLI
Sbjct: 354 ESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLI 413

Query: 303 DMYSKC-------------------------------GSLTYSRRVFDNMSERTVISWNA 331
            MY+KC                               G++  +R  FD MSE+ VI+WNA
Sbjct: 414 SMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 473

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ML  Y +HG   + + ++ +M  E  V+PD VTY+ +  GC+  G    G  +    V  
Sbjct: 474 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV-- 531

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           K G   +      V+ M  + GR+ EA
Sbjct: 532 KVGLIIDTSVANAVITMYSKCGRILEA 558



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 182/359 (50%), Gaps = 42/359 (11%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           +  +GL       +TLL+A ++   L   +R+   ++     P V     ++  Y K   
Sbjct: 30  LVAVGLASAVFLQNTLLHAYLSCGALSDARRL---LLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLT 167
           LSDA ++F  M  R+V SW  ++S Y Q      +L  F+ M RS D+ PN FT A  + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 168 SCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG----------RIHE---- 212
           SC GA G+  L  Q+ +++ K + +    V ++L+DM+ + G          RI E    
Sbjct: 147 SC-GALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMF 205

Query: 213 -----------------ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
                            A  +F+ +PERDVVS   ++S  +Q G   EA+++   +Q +G
Sbjct: 206 CRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTY 313
           +  +  TY S LTA + L++L  GKQ+H+ V+R    I  YV   ++L+++Y+K G    
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKE 323

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           ++ VF+++ +R  ++W  ++ G+ ++G   E VELFN MR E  +  D      ++SGC
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE-LMTLDQFALATLISGC 381



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 3/154 (1%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V+  N +++ Y+K G L+ +  +F  M  R V SWN ++ GY +       +E F  M  
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
                P++ T    +  C   G     L +   +       + E+     +VDM  R G 
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVA--AALVDMFVRCGA 188

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V  A      +  EPT     S+L      Y VD
Sbjct: 189 VDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD 221


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 357/619 (57%), Gaps = 40/619 (6%)

Query: 51  TLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCE 107
           +  LE    E  + L  C  Q  L+   ++HA M+KT      Y  T+ + F       +
Sbjct: 7   SFSLEHNLYETMSCLQRCSKQEELK---QIHARMLKTGLMQDSYAITKFLSFCISSTSSD 63

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A+ +FD     +   W  MI  +S       +L L+ RML S    N +TF ++L 
Sbjct: 64  FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLK 123

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA---------------------- 205
           +C+    FE   QIH+ I K  +E+ +Y  +SL++ YA                      
Sbjct: 124 ACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183

Query: 206 ---------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
                    KAG++  A  +F  + E++ +S T +ISGY Q  +++EA++LF ++Q   +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             + V+ A+ L+A + L AL  GK +HS++ +  I    VL   LIDMY+KCG +  +  
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF N+ +++V +W A++ GY+ HG GRE +  F  M++   +KP+ +T+ AVL+ CS+ G
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMG-IKPNVITFTAVLTACSYTG 362

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + + G  +F+ + +     +P IEHYGC+VD+LGRAG + EA  FI+ MP +P A I G+
Sbjct: 363 LVEEGKLIFYSM-ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL ACR+H N+++GE +G+ L+ I+P + G YV  +N++A   +W+     R LMKE+ V
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD-VD 555
            K PG S I L+   H F A DRSHP  E++ +K + +  K +E GYVP++  +L D VD
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVD 541

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           ++++E ++  HSEKLA+T+GLI T  G  IR++KNLR+C DCH   K +SK+Y R + +R
Sbjct: 542 DDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMR 601

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D+ RFHH  +G CSCGDYW
Sbjct: 602 DRTRFHHFRDGKCSCGDYW 620



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 19  QQLTVPSFPPNPQNLKTL---CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLR 75
           Q++   S P N     +L   CSN    +   ++     ++ +E     +N+ +N   + 
Sbjct: 104 QRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVT 163

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G  ++   +      P       +I  Y K   +  A  +F +M E+N +SWT MIS Y 
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q   + EAL LF  M  SD EP+  + A  L++CA     E GK IHS + K+       
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           +G  L+DMYAK G + EA  VF+ + ++ V + TA+ISGYA  G   EAI  F ++Q  G
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMG 343

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYS 314
           +  N +T+ +VLTA S    +  GK +   + R + +   +     ++D+  + G L  +
Sbjct: 344 IKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403

Query: 315 RRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVELF 349
           +R    M  +   + W A+L     H    +G E+ E+ 
Sbjct: 404 KRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/571 (42%), Positives = 337/571 (59%), Gaps = 40/571 (7%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++  Y K   L  AR+ FDEM ER+VVSW AM SAY+QK    EALNLF +ML     
Sbjct: 196 TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGIT 255

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P++ T+   ++SC+      L   I  +I + +   + +V ++LLDM+AK G +  AR +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 217 FECL--------------------------------PERDVVSCTAIISGYAQLGLDEEA 244
           F+ L                                P+RDVVS  ++I+GYAQ G    +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 245 IELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           IELF+++     +  + VT ASVL+A   + AL     V   V    I   +   NSLI 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGS+  + R+F  M  R V+S+N ++ G++ +G G+E ++L   M EE  ++PD V
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG-IEPDHV 494

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           TY+ VL+ CSH G+ + G  VF  I        P ++HY C+VD+LGRAG + EA   I+
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQ------APTVDHYACMVDLLGRAGELDEAKMLIQ 548

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +MP +P A + GSLL A R+H  V +GE    +L E+EP+N GNYV+LSN+YAS GRWED
Sbjct: 549 SMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWED 608

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V RVRE+MK+  + K  G SW+E    +H F   DRSH   +++   + +L  K K  G+
Sbjct: 609 VKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGF 668

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           V D SC L DV+EE+KE++L  HSEKLA+ F L+ +  G  IRV+KNLRIC+DCH   K 
Sbjct: 669 VADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKM 728

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+ GR++ +RD NRFH   EG CSC DYW
Sbjct: 729 ISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 55/321 (17%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL----SDARKM 115
           E   L +   N R LR   + H H++        Y  + L++    C  L    +    +
Sbjct: 3   ELVALASKISNIRQLR---QFHGHLVHNSLHSHNYWVSLLLI---NCTRLHAHPAYVDSI 56

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           F      +   ++ M+  YS+     + ++LF      +  P  F +   L   AG    
Sbjct: 57  FTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVY-IYLIKLAG---- 111

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           + G   H+ ++K       ++ +++LDMYAK G++  AR +FE + ER +    ++ISG 
Sbjct: 112 KSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            + G + EA+ LF  +       N +T+ S++T                           
Sbjct: 172 WKSGNETEAVVLFNMMPAR----NIITWTSMVTG-------------------------- 201

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
                    Y+K G L  +RR FD M ER+V+SWNAM   Y++    +E + LF+ M EE
Sbjct: 202 ---------YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEE 252

Query: 356 NKVKPDSVTYLAVLSGCSHGG 376
             + PD  T++  +S CS  G
Sbjct: 253 G-ITPDDTTWVVTISSCSSIG 272



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 17/214 (7%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE----ARGVFECLPERDVVSCTAIISG 234
           +Q H  ++ ++  SH Y  S LL       R+H        +F   P  D    + ++  
Sbjct: 18  RQFHGHLVHNSLHSHNYWVSLLL---INCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKY 74

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y+++G   + + LF+      +      Y   L  L+G +    G   H++VL+      
Sbjct: 75  YSRMGAHNQVVSLFKCTHSLNLRPQPFVYI-YLIKLAGKS----GNLFHAYVLKLGHIDD 129

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
             ++N+++DMY+K G +  +R +F+ M+ERT+  WN+M+ G  K G   E V LFN+M  
Sbjct: 130 HFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
            N      +T+ ++++G +  G  +     F E+
Sbjct: 190 RN-----IITWTSMVTGYAKMGDLESARRYFDEM 218


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 366/639 (57%), Gaps = 52/639 (8%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-- 87
           +  L  +G++ +AL   ++M + G+ +    Y + L AC    +LR G+++HA +I+   
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
           C  P  Y+ + L+  Y KC C  +A+ +F+ + +RN V+WT +I+ + Q     E++ LF
Sbjct: 302 CIDP--YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELF 359

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +M       ++F  AT+++ C       LG+Q+HSL +KS     + V +SL+ MYAK 
Sbjct: 360 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--------- 258
             +  A  +F  + E+D+VS T++I+ ++Q+G   +A E F  +  + +I+         
Sbjct: 420 DNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYI 479

Query: 259 -----------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
                                  ++VTY ++    + L A   G Q+    ++  +    
Sbjct: 480 QHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDT 539

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + N++I MYSKCG +  +R+VFD ++ + ++SWNAM+ GYS+HGMG++ +E+F+ + + 
Sbjct: 540 SVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR 599

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
              KPD ++Y+AVLSGCSH G+   G + F +++       P +EH+ C+VD+LGRAG +
Sbjct: 600 G-AKPDYISYVAVLSGCSHSGLVQEGKSYF-DMMKRVHNISPGLEHFSCMVDLLGRAGHL 657

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA + I  MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++++ +Y
Sbjct: 658 TEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIY 717

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A AG+ +D  ++R+LM++K + K+PG SW+E++  +H F A D SHP    +  K+ +L 
Sbjct: 718 ADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELM 777

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
            K    GYV          D  + E   + HSEKLA+ FGL+  P   PI ++KNLRIC 
Sbjct: 778 EKIARLGYVR--------TDSPRSE---IHHSEKLAVAFGLMSLPAWMPIHIMKNLRICG 826

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +S V GR+  +RD  RFHH   G+CSCGDYW
Sbjct: 827 DCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 203/414 (49%), Gaps = 35/414 (8%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDT--LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           S G L +  + +  LG+  +F   D   +  A V+     G   + + +      P ++ 
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           R  ++V Y K   +  A ++FD M ER+VVSW  M+SA SQ     EAL++ + M     
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             +  T+ + LT+CA       GKQ+H+ +I++      YV S+L+++YAK G   EA+G
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF  L +R+ V+ T +I+G+ Q G   E++ELF +++ E M  +    A++++       
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC--------------------------- 308
           L  G+Q+HS  L+      VV+ NSLI MY+KC                           
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 309 ----GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
               G++  +R  FD MS + VI+WNAML  Y +HG   + + ++N+M  E  V+PD VT
Sbjct: 447 HSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVT 506

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           Y+ +  GC+  G    G  +    V  K G   +      V+ M  + GR+ EA
Sbjct: 507 YVTLFKGCADLGANKLGDQIIGRTV--KVGLILDTSVANAVITMYSKCGRILEA 558



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 178/358 (49%), Gaps = 40/358 (11%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           +  +GL       +TLL+A ++   L   +R+   ++     P V     ++  Y K   
Sbjct: 30  LVAVGLASAVFLQNTLLHAYLSCGALPDARRL---LLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLT 167
           LSDA ++F  M  R+V SW  ++S Y Q      +L  F+ M RS D+ PN FTFA  + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG----------RIHE----- 212
           SC       L  Q+  ++ K   +    V ++L+DM+ + G          RI E     
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 213 ----------------ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
                           A  +F+ +PERDVVS   ++S  +Q G   EA+++   +Q +G+
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLTYS 314
             +  TY S LTA + L++L  GKQ+H+ V+R    I  YV   ++L+++Y+KCG    +
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA--SALVELYAKCGCFKEA 324

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           + VF+++ +R  ++W  ++ G+ +HG   E VELFN MR E  +  D      ++SGC
Sbjct: 325 KGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE-LMTLDQFALATLISGC 381



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 35/198 (17%)

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR-------------------------- 316
           H  ++   + S V LQN+L+  Y  CG+L  +RR                          
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 317 ------VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
                 +F  M  R V SWN ++ GY +       +E F  M       P++ T+   + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            C  G + +R LA+    +  K G + + +    +VDM  R G V  A      +  EPT
Sbjct: 147 SC--GALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIK-EPT 203

Query: 431 AAILGSLLGACRVHYNVD 448
                S+L      Y VD
Sbjct: 204 IFCRNSMLVGYVKTYGVD 221


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 343/571 (60%), Gaps = 40/571 (7%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++  Y K + L  AR+ FD M ER+VVSW AM+S Y+Q   + E L LF  M+ +  E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIE 257

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+E T+ TV+++C+      L   +   + +   + + +V ++LLDMYAK G I  AR +
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317

Query: 217 FE--------------------------------CLPERDVVSCTAIISGYAQLGLDEEA 244
           F+                                 +P R+VV+  ++I+GYAQ G    A
Sbjct: 318 FDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMA 377

Query: 245 IELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           IELF+++   + +  + VT  SV++A   L AL  G  V   +   +I   +   N++I 
Sbjct: 378 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 437

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYS+CGS+  ++RVF  M+ R V+S+N ++ G++ HG G E + L + M+ E  ++PD V
Sbjct: 438 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK-EGGIEPDRV 496

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ VL+ CSH G+ + G  VF  I D      P I+HY C+VD+LGR G + +A   ++
Sbjct: 497 TFIGVLTACSHAGLLEEGRKVFESIKD------PAIDHYACMVDLLGRVGELEDAKRTME 550

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
            MP EP A + GSLL A R+H  V++GE    +L E+EP+N+GN+++LSN+YASAGRW+D
Sbjct: 551 RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKD 610

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V R+RE MK+  V K  G SW+E    LH F  +DRSH   +++   + +L  K +EAGY
Sbjct: 611 VERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGY 670

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           + D SCVL DV+EE+KE+++  HSEKLA+ + L+ +  GA IRV+KNLR+C DCH   K 
Sbjct: 671 IADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKM 730

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+ GR + +RD NRFH   +G CSC DYW
Sbjct: 731 ISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 79/386 (20%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISA 133
           GG   HAH++K  +    ++R  +I  Y +   +  ARK+FDE+   ER V  W AM+S 
Sbjct: 113 GGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y +     +A  LF  M     E N  T+  ++T                          
Sbjct: 173 YWKWESEGQAQWLFDVM----PERNVITWTAMVTG------------------------- 203

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
                     YAK   +  AR  F+C+PER VVS  A++SGYAQ GL EE + LF ++  
Sbjct: 204 ----------YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVN 253

Query: 254 EGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
            G+  +  T+ +V++A S  G   L        H  + ++  +V  + +L+DMY+KCGS+
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFV--RTALLDMYAKCGSI 311

Query: 312 TYSRRVFD--------------------------------NMSERTVISWNAMLVGYSKH 339
             +RR+FD                                 M  R V++WN+M+ GY+++
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G     +ELF  M    K+ PD VT ++V+S C H G  + G  V   + +  +  +  I
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE--NQIKLSI 429

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNM 425
             +  ++ M  R G + +A    + M
Sbjct: 430 SGHNAMIFMYSRCGSMEDAKRVFQEM 455



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 37/263 (14%)

Query: 166 LTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA-GRIHEARGVFECLPER 223
           L S A   G F   +Q+H+ II ++   H Y  + L++   +     H    +F      
Sbjct: 4   LGSIASRVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNP 63

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V   T+++  Y+ L    + + +F  +Q  G+  +   Y  +L   +G   +G     H
Sbjct: 64  NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVY-PILIKSAGNGGIG----FH 118

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSKHGM 341
           +HVL+    S   ++N++IDMY++ G + ++R+VFD +   ER V  WNAM+ GY K   
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 342 GREVVELFNLMREEN------------KVK------------PDS--VTYLAVLSGCSHG 375
             +   LF++M E N            KVK            P+   V++ A+LSG +  
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQN 238

Query: 376 GMEDRGLAVFHEIVDCKDGFEPE 398
           G+ +  L +F E+V+   G EP+
Sbjct: 239 GLAEEVLRLFDEMVNA--GIEPD 259



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G  V   + +   +  +     +I  Y++C  + DA+++F EM  R
Sbjct: 399 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 458

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVS+  +IS ++   H  EA+NL   M     EP+  TF  VLT+C+ A   E G+++ 
Sbjct: 459 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 518

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             I     + +    + ++D+  + G + +A+   E +P
Sbjct: 519 ESIKDPAIDHY----ACMVDLLGRVGELEDAKRTMERMP 553


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 338/572 (59%), Gaps = 5/572 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L A      +  G+ VH + +K       ++ T L+  Y+KC  +  A+ +FD M   ++
Sbjct: 219 LRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDL 278

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHS 183
           V++ A+IS YS       ++ LF  +  S   PN  T   V+      FG EL  + +H+
Sbjct: 279 VAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVI-PVYSPFGHELLARCLHA 337

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            ++K+  ++   V ++L  +Y +   +  AR +F+ + E+ + S  A+ISGYAQ GL E 
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF+ +Q   +  N +T +S L+A + L AL  GK VH  + + ++   V +  +LID
Sbjct: 398 AVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALID 457

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCGS+  +R +FD M  + V+SWNAM+ GY  HG G E ++L+  M +  ++ P S 
Sbjct: 458 MYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDA-RILPTSS 516

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+L+V+  CSHGG+ D G  VF  ++  +    P IEH  C+VD+LGRAG++ EALE I 
Sbjct: 517 TFLSVIYACSHGGLVDEGQKVF-RVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELIS 575

Query: 424 NMPFEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             P       + G+LLGAC VH N D+ +   Q+L E++ ENAG YV+LSNLY S   + 
Sbjct: 576 EFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYS 635

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +   VR+  K + + K PG + IE+    H F A D  HP  E + + +++L+ K  EAG
Sbjct: 636 EAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAG 695

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P     LYDV+EE+KE ++  HSEKLA+ FGL+ T  G  IR+IKNLR+C+DCHN  K
Sbjct: 696 YQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATK 755

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           F+SKV  R + +RD +RFHH  +G CSCGDYW
Sbjct: 756 FISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 177/351 (50%), Gaps = 8/351 (2%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
             + +H   +   Y    ++ + L   Y K     DARK+FD +   + + W  +++   
Sbjct: 132 AARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP 191

Query: 136 QKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
                 EAL  F+RM+ +    P+  T A+ L + A A    +G+ +H   +K     H 
Sbjct: 192 GS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +V + L+ +Y+K G +  A+ +F+ +   D+V+  A+ISGY+  G+ E ++ELF++L   
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G   N  T  +V+   S        + +H+ V++  + +  ++  +L  +Y +   +  +
Sbjct: 308 GWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESA 367

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R +FD M E+T+ SWNAM+ GY+++G+    V LF LM+E N V+P+ +T  + LS C+H
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELN-VQPNPITISSTLSACAH 426

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G    G  V H I+  K+  E  +     ++DM  + G + EA      M
Sbjct: 427 LGALSLGKWV-HRIIS-KEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM 475



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 170/380 (44%), Gaps = 46/380 (12%)

Query: 157 PNEFTFATVLTSCAGAFGFE-----LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           P+ F+FA   TS + +           + +H L + + + +  +V S+L  +Y K  R  
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGD 166

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTAL 270
           +AR VF+ +P  D +    +++G        EA+E F ++   G +  +  T AS L A 
Sbjct: 167 DARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           +  + +  G+ VH + ++  +  +  +   L+ +YSKCG +  ++ +FD M    ++++N
Sbjct: 223 AEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME--DRGLAVF--- 385
           A++ GYS +GM    VELF  +   +  +P+S T +AV+   S  G E   R L  F   
Sbjct: 283 ALISGYSVNGMVESSVELFKEL-TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK 341

Query: 386 --------------------HEIVDCKDGF----EPEIEHYGCVVDMLGRAGRVGEAL-- 419
                               +++   +  F    E  +E +  ++    + G    A+  
Sbjct: 342 ARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVAL 401

Query: 420 -EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI--LSNLYA 476
            + ++ +  +P    + S L AC     + +G++V  R++  E      YV+  L ++YA
Sbjct: 402 FQLMQELNVQPNPITISSTLSACAHLGALSLGKWV-HRIISKEKLELNVYVMTALIDMYA 460

Query: 477 SAGRWEDVTRVRELMKEKAV 496
             G   +   + + M  K V
Sbjct: 461 KCGSIAEARSIFDRMDNKNV 480


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 344/593 (58%), Gaps = 49/593 (8%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M  LG+      +  +L+ C        G +VH  ++K      V+++  LI FY +C
Sbjct: 120 VRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAEC 179

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +    K+F+ M ERNVVSWT++I  Y++     EA++LF  ML               
Sbjct: 180 GHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNK------------- 226

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
                                        + ++L+DMY K G I  A+ +F+   +R++V
Sbjct: 227 ----------------------------VMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 258

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL-----GHGKQ 281
               I+S YA+ GL  EA+ +  ++  +G   + VT  S ++A + L  L      HG  
Sbjct: 259 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYW 318

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           VH+++ +  IP  + L  +L+DM+++CG    + +VF+ M+ER V +W A +   +  G 
Sbjct: 319 VHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGN 378

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
           G     LFN M  +  VKPD V ++ VL+ CSHGG  ++GL +F  + D   G  P+IEH
Sbjct: 379 GEGATGLFNQMLIQG-VKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED--HGISPQIEH 435

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           YGC+VD+LGRAG + EA + IK+MP EP   + GSLL ACRVH NV++  +  +R+ E+ 
Sbjct: 436 YGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELA 495

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           P+ AG +V+LSN+YASAG+W DV RVR  ++EK V K PG S ++++ ++H F + D SH
Sbjct: 496 PQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 555

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P    ++  +++++ +F +AG++PD+S VL DVDE++KE +L  HSEKLA+ FGLI T  
Sbjct: 556 PEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGR 615

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             PIRV+KNLR+C DCH+FAK  S +Y R++ +RD NRFH   +G CSC DYW
Sbjct: 616 SMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---IHEARGVFECLPERDVVSCTAI---- 231
           KQ+H  I K+  +      + L++  A+      +  AR  FE   E DV S  A+    
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE-DVRSDDALFMLN 100

Query: 232 --ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
             I GY+  GL  EAI L+ ++ V G+  N+ T+  VL+  + +AA   G QVH  V++ 
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            +   V +QN LI  Y++CG + +  +VF+ MSER V+SW +++ GY++    +E V LF
Sbjct: 161 GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M   NKV  +++  + +  G       D    +F E VD        +  Y  ++   
Sbjct: 221 FEML--NKVMVNALVDMYMKCGAI-----DAAKRLFDECVD------RNLVLYNTILSNY 267

Query: 410 GRAGRVGEALEFIKNM 425
            R G   EAL  +  M
Sbjct: 268 ARQGLAREALAILDEM 283


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/619 (37%), Positives = 373/619 (60%), Gaps = 12/619 (1%)

Query: 22  TVPSFPPNPQNL--KTLCSNGQLTKAL--IEMATLGLEMRFEEY--DTLLNACVNQRTLR 75
            +PS  P   NL      S+G+   AL  + +A  GL     EY   + + A  + R+  
Sbjct: 75  AMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLN----EYVLSSAVAATAHVRSYD 130

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G++ H + IK       Y+ + ++  Y +C  + +A K+FD +   NV ++ +MI+ + 
Sbjct: 131 MGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFL 190

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
            +     + ++   M+R+  + +  ++  VL  CA      LG Q+H+  +K   E ++Y
Sbjct: 191 DRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVY 250

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           VGS+L+DMY K    HEA  VFE LPE+++VS TAI++ Y Q  L E+A++LF  +++EG
Sbjct: 251 VGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEG 310

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N  TYA  L + +GLA L +G  + +  ++      + + N+L++MYSK GS+  +R
Sbjct: 311 VRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDAR 370

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           RVF +M  R V+SWN++++GY+ HG  RE +E F+ M    +V P  VT++ VLS C+  
Sbjct: 371 RVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV-PSYVTFIGVLSACAQL 429

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D G   +  I+  + G +P  EHY C+V +L R GR+ EA  FI++           
Sbjct: 430 GLVDEGF-YYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWR 488

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLL +C+V+ N  +G  V +++ +++P++ G YV+LSN+YA A RW+ V +VR LM+E  
Sbjct: 489 SLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELG 548

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V K+PG SWI++   +H F + D+ HP  E+++ K+++L  K K  GYVP+++  L+DV+
Sbjct: 549 VRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVE 608

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +EQKE+ L+ HSEKLAL FGLI TP+G  IR++KN+RIC DCH   K +S   GR++ +R
Sbjct: 609 DEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVR 668

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH I +G CSC DYW
Sbjct: 669 DTVRFHCIEDGVCSCDDYW 687



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 7/350 (2%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ VHA +++   R  V     LI  Y KC  L  AR++FD M  RN VS   ++S Y+ 
Sbjct: 35  GKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                +AL L   +  +D   NE+  ++ + + A    +++G+Q H   IK+    H YV
Sbjct: 94  SGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYV 150

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            S++L MY +   + EA  VF+ +   +V +  ++I+G+   G  + +  + R +     
Sbjct: 151 CSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVG 210

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             ++V+Y +VL   +    +  G QVH+  L+  +   V + ++L+DMY KC     + R
Sbjct: 211 QWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANR 270

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF+ + E+ ++SW A++  Y+++ +  + ++LF  M  E  V+P+  TY   L+ C+   
Sbjct: 271 VFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEG-VRPNEFTYAVALNSCAGLA 329

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
               G A+       K G    +     +++M  ++G V +A     +MP
Sbjct: 330 TLKNGNAL--GACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMP 377



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 7/200 (3%)

Query: 175 FELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             LGK +H+ ++++  F+   Y  ++L+ +Y K GR+  AR VF+ +P R+ VS   ++S
Sbjct: 32  LSLGKAVHARVVRAARFDVVQY--NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMS 89

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GYA  G   +A+ L R   V     N    +S + A + + +   G+Q H + ++  +  
Sbjct: 90  GYASSGRHRDALALLR---VADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAE 146

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
           +  + ++++ MY +C  +  + +VFDN+S   V ++N+M+ G+   G       +   M 
Sbjct: 147 HPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSM- 205

Query: 354 EENKVKPDSVTYLAVLSGCS 373
             N  + D V+Y+AVL  C+
Sbjct: 206 VRNVGQWDHVSYVAVLGHCA 225


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/595 (37%), Positives = 354/595 (59%), Gaps = 8/595 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM   G++     + T L AC     +  G ++H   +K+ +     +    I  Y+K
Sbjct: 93  LCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSK 152

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  A ++F++M  RN+VSW AMI+ ++ + +  ++L LF RM      P+EFTF + 
Sbjct: 153 CGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTST 212

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHI--YVGSSLLDMYAKAGRIHEARGVFECLPER 223
           L +C        G QIH+ +I   F   I   + S+++D+YAK G + EA+ VF+ + ++
Sbjct: 213 LKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK 272

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +++S +A+I G+AQ G   EA++LFR+L+      +    + ++   + LA +  GKQ+H
Sbjct: 273 NLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMH 332

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            ++L+      + + NS+IDMY KCG    + R+F  M  R V+SW  M+ GY KHG+G 
Sbjct: 333 CYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGE 392

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           + + LFN M+ +  ++ D V YLA+LS CSH G+       F  + +     +P IEHY 
Sbjct: 393 KAIHLFNRMQLDG-IELDEVAYLALLSACSHSGLIRESQEYFSRLCN-NHQMKPNIEHYA 450

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+LGRAG++ EA   I+NM  +P   I  +LL ACRVH N++IG  VG+ L  ++ +
Sbjct: 451 CMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTD 510

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           N  NYV++SN+YA AG W++  RVR+L+K K + K+ G+SW+E+++ +H F+  D +HP+
Sbjct: 511 NPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPL 570

Query: 524 REELSAKVKQLSVKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT--- 579
            E++   +K++  + K E GY   +   L+DV+EE KE+ L  HSEKLA+   L+     
Sbjct: 571 TEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGME 630

Query: 580 PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +G  IRV KNLR+C DCH F K +SK+  +   +RD NRFH   +G CSCGDYW
Sbjct: 631 KKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 174/294 (59%), Gaps = 4/294 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C        G +VHA  +   +   + +   LI  Y KC  +  A  +FD M ERN
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG-FELGKQIH 182
           VVSWTA++  Y Q+ ++  +L L   M  S  +PNEFTF+T L +C GA G  E G QIH
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKAC-GALGVVENGMQIH 128

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            + +KS FE    VG++ +DMY+K GRI  A  VF  +P R++VS  A+I+G+   G   
Sbjct: 129 GMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGR 188

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNS 300
           +++ LF+++Q +G + +  T+ S L A   L A+  G Q+H+ ++   F I    ++ ++
Sbjct: 189 KSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASA 248

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           ++D+Y+KCG L  +++VFD + ++ +ISW+A++ G+++ G   E ++LF  +RE
Sbjct: 249 IVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRE 302



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 5/259 (1%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            A +L +C+    F+ G Q+H+  +   F   + + + L+DMY K  R+  A  VF+ + 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           ER+VVS TA++ GY Q G  + ++ L  ++   G+  N  T+++ L A   L  + +G Q
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H   ++       V+ N+ IDMYSKCG +  + +VF+ M  R ++SWNAM+ G++  G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
           GR+ + LF  M+ + +V PD  T+ + L  C   G    G  +   ++    GF   I +
Sbjct: 187 GRKSLVLFQRMQGQGEV-PDEFTFTSTLKACGALGAIRGGTQIHASLI--TRGFPISIRN 243

Query: 402 Y--GCVVDMLGRAGRVGEA 418
                +VD+  + G + EA
Sbjct: 244 IIASAIVDLYAKCGYLFEA 262


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 339/574 (59%), Gaps = 6/574 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C ++  +  G+R+H H++   ++   YL   L+  Y KC  L  A+ +F     RNV
Sbjct: 64  LRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNV 123

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
            SWT M++A++   H  +ALNL   M      PN  TF  +L + A     + G+ +H  
Sbjct: 124 FSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRR 183

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           I    F + I+V + L++MYAK   + +A  VFE L  R V++ TA+++ YA  G   +A
Sbjct: 184 IACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDA 243

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           +++F  + ++G+    VT+ +V+   + +A  G G++VH  V+     + V + N+LI+M
Sbjct: 244 LKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHG-VIDARSEANVCVGNALINM 302

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK----VKP 360
           Y KC S   +R+VFD M  + +I+WN+M+  Y ++G G + +E++  M+E       +  
Sbjct: 303 YGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITH 362

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T++ VL  CSH G+      ++  ++    GF+P     GC++D+LGRAG + EA E
Sbjct: 363 DDITFIGVLFACSHAGLVKDSCKLYSSMIG-DYGFKPTSLQCGCLIDLLGRAGWLDEAEE 421

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI +MP+ P   I   LLGAC  H +V+       R+M + P ++G+YV LSNLYA A R
Sbjct: 422 FINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAER 481

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W+D+ R+R+LM ++ V K  G+S IE+  +LH F A D SHP + E+  +++++    +E
Sbjct: 482 WDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRE 541

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            GYVPD+  VL++   E KEK+   HSE+LA+ FG+I +P G  +R++KNLR+C DCH+ 
Sbjct: 542 RGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSA 601

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +SK  GRK+ +RD NRFH    G+CSC DYW
Sbjct: 602 TKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 142/269 (52%), Gaps = 4/269 (1%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+    A  L  C        GK+IH  I+   F+S  Y+ + L++MY K G +  A+ V
Sbjct: 55  PSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSV 114

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F   P R+V S T +++ +A  G   +A+ L   + +EG+  N +T+  +L A++ L+ L
Sbjct: 115 FHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWL 174

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+ +H  +      + + + N LI+MY+KC SL  +  VF++++ R+VI+W A++  Y
Sbjct: 175 DRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAY 234

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           + +G  R+ +++F LM  +  V+P  VT++ V+  C+   +   G  V H ++D +   E
Sbjct: 235 ALNGFFRDALKVFLLMTLDG-VEPTEVTFVTVVDVCADIAVFGIGREV-HGVIDARS--E 290

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             +     +++M G+     EA +    M
Sbjct: 291 ANVCVGNALINMYGKCASPDEARKVFDAM 319



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 152/292 (52%), Gaps = 10/292 (3%)

Query: 39  NGQLTKAL--IEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG    AL  +E+  L G+      +  LL A      L  G+ +H  +    +   +++
Sbjct: 136 NGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFV 195

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y KC  L+DA  +F+ +  R+V++WTA+++AY+      +AL +F+ M     
Sbjct: 196 ANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGV 255

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EP E TF TV+  CA    F +G+++H  +I +  E+++ VG++L++MY K     EAR 
Sbjct: 256 EPTEVTFVTVVDVCADIAVFGIGREVHG-VIDARSEANVCVGNALINMYGKCASPDEARK 314

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-----VEGMISNYVTYASVLTAL 270
           VF+ +  +D+++  ++I+ Y Q G   +A+E+++++Q     + G+  + +T+  VL A 
Sbjct: 315 VFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFAC 374

Query: 271 SGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           S    +    +++S ++  +      +    LID+  + G L  +    ++M
Sbjct: 375 SHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSM 426


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+ NA  +   L  G+ +++ +        V +    +  +     L DAR++F++M +R
Sbjct: 212 TVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDR 271

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VV+W  +I+ Y Q  +  EA+ LF R+ +   + N+ TF  +L           GK IH
Sbjct: 272 DVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIH 331

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L+ ++ ++  + V ++L+ +Y +     +A  +F  +  +DV++ T +   YAQ G  +
Sbjct: 332 ELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRK 391

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LF+++Q+EG      T  +VL   + LAAL  G+Q+HSH++       +V++ +LI
Sbjct: 392 EALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALI 451

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MY KCG +  +R VF+ M++R ++ WN+ML  Y++HG   E ++LFN M+ + + K D+
Sbjct: 452 NMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGE-KADA 510

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V++++VLS  SH G    G   F  ++       P  E YGCVVD+LGRAGR+ EA++ +
Sbjct: 511 VSFVSVLSALSHSGSVTDGYQYFVAMLQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIV 569

Query: 423 KNMP-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
             +    P   +  +LLGACR H   D  +   ++++E +P ++G YV+LSN+YA+AG W
Sbjct: 570 LKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDW 629

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V R+R+LM+ + V K+PGRS IE+   +H F   DRSHP R  + A++  L+ + + A
Sbjct: 630 DGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAA 689

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD   +L+DV++E+KE +L  HSE+LA+ FGL+ TP G P+RVIKNLR+C DCH   
Sbjct: 690 GYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTAT 749

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++SK+ GR++ +RD +RFH+  +G CSC DYW
Sbjct: 750 KYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 229/442 (51%), Gaps = 6/442 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +LNAC +  +L+ G  +H  +++  +   V++ T LI  YNKC  +  A   F  + 
Sbjct: 109 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 168

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VVSWTAMI+A  Q      A  L+ RM      PN+ T  TV  +         GK 
Sbjct: 169 HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKF 228

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I+SL+     ES + V +S ++M+  AG + +AR +FE + +RDVV+   +I+ Y Q   
Sbjct: 229 IYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNEN 288

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LF +LQ +G+ +N +T+  +L   + L +L  GK +H  V        VV+  +
Sbjct: 289 FGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATA 348

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+ +Y +C +   + ++F +M  + VI+W  M V Y+++G  +E ++LF  M+ E + +P
Sbjct: 349 LMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR-RP 407

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            S T +AVL  C+H     +G  +   I++  +GF  E+     +++M G+ G++ EA  
Sbjct: 408 TSATLVAVLDTCAHLAALQKGRQIHSHIIE--NGFRMEMVVETALINMYGKCGKMAEARS 465

Query: 421 FIKNMPFEPTAAILGSLLGACRVH-YNVDIGEFVGQRLMEIEPENAGNYV-ILSNLYASA 478
             + M  +    +  S+LGA   H Y  +  +   Q  ++ E  +A ++V +LS L  S 
Sbjct: 466 VFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSG 524

Query: 479 GRWEDVTRVRELMKEKAVTKDP 500
              +       ++++ ++T  P
Sbjct: 525 SVTDGYQYFVAMLQDFSITPTP 546



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 195/363 (53%), Gaps = 3/363 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            LL  C + + +  G+RVH H+    +     +   LI  Y +C  + +A+++F+ +  +
Sbjct: 10  ALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 69

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +WT MI  Y Q+     AL +F +M   D  P + T+  +L +CA     + G +IH
Sbjct: 70  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIH 129

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I++  FE  ++VG++L++MY K G +  A   F+ L  RDVVS TA+I+   Q     
Sbjct: 130 GQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFA 189

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A  L+R++Q++G++ N +T  +V  A      L  GK ++S V    + S V + NS +
Sbjct: 190 LARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAM 249

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +M+   G L  +RR+F++M +R V++WN ++  Y ++    E V LF  ++++  +K + 
Sbjct: 250 NMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDG-IKAND 308

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++ +L+  +      +G  V HE+V  + G++ ++     ++ + GR    G+A +  
Sbjct: 309 ITFVLMLNVYTSLTSLAKG-KVIHELVK-EAGYDRDVVVATALMSLYGRCEAPGQAWKIF 366

Query: 423 KNM 425
            +M
Sbjct: 367 VDM 369



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 167/368 (45%), Gaps = 25/368 (6%)

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+   F  +L  C+ A   + G+++H  +    FE +  V   L+ MYA+ G + EA+ 
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VFE L  +DV + T +I  Y Q G  + A+ +F ++Q E ++   VTY ++L A +   +
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G ++H  +L+      V +  +LI+MY+KCGS+  +   F  +  R V+SW AM+  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
             +H        L+  M+ +  V P+ +T   V +          G  ++  +       
Sbjct: 182 CVQHDQFALARWLYRRMQLDG-VVPNKITLYTVFNAYGDPHYLSEGKFIYSLV--SSRVM 238

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV-- 453
           E ++      ++M G AG +G+A    ++M       +  +++    V  N + GE V  
Sbjct: 239 ESDVRVMNSAMNMFGNAGLLGDARRLFEDMV--DRDVVTWNIVITFYVQ-NENFGEAVRL 295

Query: 454 -GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD------------- 499
            G+   +    N   +V++ N+Y S         + EL+KE    +D             
Sbjct: 296 FGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGR 355

Query: 500 ---PGRSW 504
              PG++W
Sbjct: 356 CEAPGQAW 363


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 346/556 (62%), Gaps = 3/556 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA +IK+      ++  RL+  Y K     DA+++FDEM  +++VSW +++S  S + +
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 140 SFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
               LN F RM   S  +PNE T  +V+++CA     + GK +H +++K        V +
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 260

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL++MY K G +  A  +FE +P R +VS  +++  +   G  E+ ++LF  ++  G+  
Sbjct: 261 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 320

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +  T  ++L A +        + +H+++ R    + +++  +L+++Y+K G L  S  +F
Sbjct: 321 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 380

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           + + +R  I+W AML GY+ H  GRE ++LF+LM +E  V+ D VT+  +LS CSH G+ 
Sbjct: 381 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLV 439

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
           + G   F EI+      EP ++HY C+VD+LGR+GR+ +A E IK+MP EP++ + G+LL
Sbjct: 440 EEGKKYF-EIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 498

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
           GACRV+ NV++G+ V ++L+ ++P +  NY++LSN+Y++AG W D ++VR LMKE+ +T+
Sbjct: 499 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 558

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558
           +PG S+IE    +H F   D+ HP  +E+  K+++L  K +EAG  P    VL+D+DEE 
Sbjct: 559 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEV 618

Query: 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKN 618
           K  ++  HSEKLA+ FGL+ T  G P+ + KNLRIC DCH+ AKF S +  R + +RD  
Sbjct: 619 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 678

Query: 619 RFHHIVEGTCSCGDYW 634
           RFHH  +G CSC DYW
Sbjct: 679 RFHHFADGLCSCRDYW 694



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 155/294 (52%), Gaps = 13/294 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G+ +H  ++K        +   LI  Y K   L  A ++F+EM  R
Sbjct: 226 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR 285

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSW +M+  ++   ++ + ++LF  M R+   P++ T   +L +C         + IH
Sbjct: 286 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 345

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + I +  F + I + ++LL++YAK GR++ +  +FE + +RD ++ TA+++GYA      
Sbjct: 346 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGR 405

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK---QVHSHVLRFE--IPSYVVL 297
           EAI+LF  +  EG+  ++VT+  +L+A S    +  GK   ++ S V R E  +  Y   
Sbjct: 406 EAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--- 462

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE 347
            + ++D+  + G L  +  +  +M  E +   W A+L     +G   +G+EV E
Sbjct: 463 -SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 515



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           Y    S++ A+S   ++ +   +H+ V++    S   + + L+ MY K G    ++R+FD
Sbjct: 119 YSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 178

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  + ++SWN+++ G S  G     +  F  MR E+  +P+ VT L+V+S C+  G  D
Sbjct: 179 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G ++   +V  K G   + +    +++M G+ G +  A +  + MP
Sbjct: 239 EGKSLHGVVV--KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 283


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/592 (38%), Positives = 361/592 (60%), Gaps = 3/592 (0%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLE-MRFEEYDTLLNACVNQRTL 74
             +Q++   SF    ++L  + +      +  E+  +G+      E   LL +    R  
Sbjct: 4   LKKQKILCNSFSLQVRHLLAIXNAXAERPSSKELVWVGIRATHVSELQHLLQSSARNRAA 63

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
             G   HA +I+   R        L+  Y+KC  +  ARK+FDEM  R++VSW  M+ ++
Sbjct: 64  IEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSH 123

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
           +Q   S +AL LF++M +     +EFT ++V+ +CA        KQ+H   +K+  +S++
Sbjct: 124 TQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNV 183

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG++LLD+YAK G + +A  VFEC+PER  V+ +++++GY Q  L EEA+ LF + Q  
Sbjct: 184 FVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAM 243

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  N  T +S L+A +  AAL  GKQV + + +  I S + + +SLIDMY+KCG +  +
Sbjct: 244 GLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEA 303

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
             VF ++ E+ V+ WNAML G+S+H    E +  F  M++   + P+ +TY++VL+ CSH
Sbjct: 304 YIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMG-ICPNEITYISVLTACSH 362

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ ++G   F  ++   +   P + HY C+VD+LGRAG + EA + I  MPF+ TA++ 
Sbjct: 363 LGLVEKGRKYFDLMIRVHN-VSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMW 421

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLL +CR++ N++  E   + L EIEP NAGN+V+LSN+YA+  RWE+V R R L+KE 
Sbjct: 422 GSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNLLKES 481

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
              K+ G+SWIE+   +H+F   +R+HP   E+  K++ L  + K+ GY       L+DV
Sbjct: 482 KAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDV 541

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSK 606
           +E +K+++L  HSEKLALTFG++  P GAPIR++KNLRIC DCH+F K  S+
Sbjct: 542 EESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASR 593


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/526 (41%), Positives = 328/526 (62%), Gaps = 14/526 (2%)

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           DAR  FD M  ++V SW  MISA +Q     EA  LF  M     E N  +++ +++   
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAM----PEKNCVSWSAMVSGYV 177

Query: 171 GAFGFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
                +   +  ++  ++S     +   ++++  Y K GR+  A  +F+ +  R +V+  
Sbjct: 178 ACGDLDAAVECFYAAPMRS-----VITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWN 232

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A+I+GY + G  E+ + LFR +   G+  N ++  SVL   S L+AL  GKQVH  V + 
Sbjct: 233 AMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKC 292

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S      SL+ MYSKCG L  +  +F  +  + V+ WNAM+ GY++HG G++ + LF
Sbjct: 293 PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLF 352

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDM 408
           + M++E  +KPD +T++AVL  C+H G+ D G+  F+ +   +D G E + EHY C+VD+
Sbjct: 353 DEMKKEG-LKPDWITFVAVLLACNHAGLVDLGVQYFNTMR--RDFGIETKPEHYACMVDL 409

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAG++ EA++ IK+MPF+P  AI G+LLGACR+H N+++ EF  + L+E++P  A  Y
Sbjct: 410 LGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGY 469

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V L+N+YA+  RW+ V  +R  MK+  V K PG SWIE++ ++H F +SDR HP    + 
Sbjct: 470 VQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIH 529

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            K+K L  K K AGYVPD+  VL+DV EE KE++LL HSEKLA+ FGL+  P G PIRV 
Sbjct: 530 EKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVF 589

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH+  K++S + GR++ +RD  RFHH  +G CSC DYW
Sbjct: 590 KNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 8/296 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM---IKTCY 89
           LK + S   +  AL ++  +G   R        N CV+   +  G      +   ++  Y
Sbjct: 132 LKDVASWNTMISALAQVGLMGEARRLFSAMPEKN-CVSWSAMVSGYVACGDLDAAVECFY 190

Query: 90  RPP---VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNL 146
             P   V   T +I  Y K   +  A ++F EM  R +V+W AMI+ Y +   + + L L
Sbjct: 191 AAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRL 250

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F  ML +  +PN  +  +VL  C+     +LGKQ+H L+ K    S    G+SL+ MY+K
Sbjct: 251 FRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSK 310

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G + +A  +F  +P +DVV   A+ISGYAQ G  ++A+ LF +++ EG+  +++T+ +V
Sbjct: 311 CGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAV 370

Query: 267 LTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           L A +    +  G Q  + + R F I +       ++D+  + G L+ +  +  +M
Sbjct: 371 LLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 157/335 (46%), Gaps = 51/335 (15%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE-ALNLFIRML 151
           V    +LI  Y +C  +  A ++F++M+ ++ V+W ++++A+++K   FE A  LF ++ 
Sbjct: 41  VIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI- 99

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               +PN  ++  +L       G                                   +H
Sbjct: 100 ---PQPNTVSYNIMLACHWHHLG-----------------------------------VH 121

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +ARG F+ +P +DV S   +IS  AQ+GL  EA  LF  +  +    N V+++++   +S
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK----NCVSWSAM---VS 174

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           G  A G             + S V+   ++I  Y K G +  + R+F  MS RT+++WNA
Sbjct: 175 GYVACGDLDAAVECFYAAPMRS-VITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNA 233

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ GY ++G   + + LF  M E   VKP++++  +VL GCS+      G  V H++V C
Sbjct: 234 MIAGYVENGRAEDGLRLFRTMLETG-VKPNALSLTSVLLGCSNLSALQLGKQV-HQLV-C 290

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           K     +      +V M  + G + +A E    +P
Sbjct: 291 KCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP 325



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L+ G++VH  + K          T L+  Y+KC  L DA ++F ++  +
Sbjct: 268 SVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK 327

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VV W AMIS Y+Q     +AL LF  M +   +P+  TF  VL +C  A   +LG Q  
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYF 387

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           + + +    E+     + ++D+  +AG++ EA  + + +P +   +    + G  ++  +
Sbjct: 388 NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKN 447

Query: 242 EEAIELFRK--LQVEGMISN-YVTYASVLTA 269
               E   K  L+++  I+  YV  A+V  A
Sbjct: 448 LNLAEFAAKNLLELDPTIATGYVQLANVYAA 478


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 354/597 (59%), Gaps = 3/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N +      +M  +G       +  +L A +    +  GQ+VH  ++K  +   V++   
Sbjct: 280 NREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANA 339

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+ FY+K + + +A K+F EM E + +S+  +++ Y+      E+L LF  +  +  +  
Sbjct: 340 LLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR 399

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            F FAT+L+  A +   ++G+QIHS  I ++  S I VG+SL+DMYAK G   EA  +F 
Sbjct: 400 NFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFS 459

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L  +  V  TA+IS Y Q GL E+ ++LF ++Q   + ++  TYAS++ A + LA+L  
Sbjct: 460 DLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTL 519

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           GKQ+HSH++     S V   ++L+DMY+KCGS+  + ++F  M  R  +SWNA++  Y++
Sbjct: 520 GKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQ 579

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +G G   + LF  M     ++PDSV+ L++L  CSH G+ + GL  F  +        P+
Sbjct: 580 NGDGDCTLRLFEEMVRSG-LQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYK-LVPK 637

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            EHY   +DML R GR  EA + +  MPFEP   +  S+L +C +H N ++ +    +L 
Sbjct: 638 KEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLF 697

Query: 459 EIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            ++   +A  YV +SN+YA+AG W++V +V++ M+E+ V K P  SW+E+    H F A+
Sbjct: 698 NMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTAN 757

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D++HP   E+  K+ +L  K  + GY PD SC L++VDEE K + L  HSE++A+ F LI
Sbjct: 758 DKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALI 817

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TPEG+PI V+KNLR C DCH   K +SK+  R++++RD +RFHH  +G C+C DYW
Sbjct: 818 STPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 214/391 (54%), Gaps = 6/391 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           N Q  +A    IEM   G++       TLL+      ++   ++VH+H+IK  Y   + +
Sbjct: 176 NNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVV 235

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y K   L  A ++F+++ ER+ V++ A+++ YS++  + EA+NLF +M     
Sbjct: 236 SNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGY 295

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P EFTFA +LT+       E G+Q+H  ++K NF  +++V ++LLD Y+K  R+ EA  
Sbjct: 296 RPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASK 355

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  +PE D +S   +++ YA  G  +E++ELF++LQ  G       +A++L+  +    
Sbjct: 356 LFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLN 415

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G+Q+HS  +  +  S +++ NSL+DMY+KCG    + R+F +++ ++ + W AM+  
Sbjct: 416 LDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISS 475

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y + G+  + ++LF  M+   K+  D+ TY +++  C+       G  +   I+    G+
Sbjct: 476 YVQKGLHEDGLKLFVEMQRA-KIGADAATYASIVRACASLASLTLGKQLHSHIIG--SGY 532

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              +     +VDM  + G + +AL+  + MP
Sbjct: 533 ISNVFSGSALVDMYAKCGSIKDALQMFQEMP 563



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 176/347 (50%), Gaps = 6/347 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           ++    +I+ Y K   LS+AR +FD M +R  V+WT +I  Y+Q     EA  LFI M R
Sbjct: 132 IFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGR 191

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +P+  + AT+L+           +Q+HS +IK  ++S + V +SLLD Y K   +  
Sbjct: 192 HGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGL 251

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F  +PERD V+  A+++GY++ G + EAI LF K+Q  G      T+A++LTA   
Sbjct: 252 AFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQ 311

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  +  G+QVH  V++      V + N+L+D YSK   +  + ++F  M E   IS+N +
Sbjct: 312 LDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVL 371

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  Y+ +G  +E +ELF  + +       +  +  +LS  +     D G  + H      
Sbjct: 372 VTCYAWNGRVKESLELFKEL-QFTGFDRRNFPFATLLSIAAISLNLDIGRQI-HSQTIVT 429

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGS 436
           D    EI     +VDM  + G  GEA     ++  +   P  A++ S
Sbjct: 430 DAIS-EILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISS 475



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 162/330 (49%), Gaps = 38/330 (11%)

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           +I+  ++++  Y K+G + EAR +F+ + +R  V+ T +I GYAQ     EA  LF ++ 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G+  ++V+ A++L+  +   ++   +QVHSHV++    S +V+ NSL+D Y K  SL 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            + ++F+++ ER  +++NA+L GYSK G  RE + LF  M+E    +P   T+ A+L+  
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVG-YRPTEFTFAAILTAG 309

Query: 373 SHGGMEDRGLAVFHEIVDCK------------DGFE---------------PEIE--HYG 403
                 + G  V   +V C             D +                PE++   Y 
Sbjct: 310 IQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYN 369

Query: 404 CVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
            +V      GRV E+LE  K +    F+       +LL    +  N+DIG  +  + +  
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVT 429

Query: 461 EPEN---AGNYVILSNLYASAGRWEDVTRV 487
           +  +    GN ++  ++YA  G + +  R+
Sbjct: 430 DAISEILVGNSLV--DMYAKCGEFGEANRI 457



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N L+  + + G L  +R++FD M  + + S N M++GY K G   E   LF+ M +    
Sbjct: 105 NFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRT-- 162

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
              +VT+  ++ G +          +F E+   + G +P+
Sbjct: 163 ---AVTWTMLIGGYAQNNQFREAFGLFIEM--GRHGIDPD 197


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 353/577 (61%), Gaps = 10/577 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T++N C N + L   +++H+ ++K  +     + T L+  YNK   L  A  +F  M 
Sbjct: 261 YSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMS 320

Query: 121 -ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             +NVVSWTAMI    Q      A  LF RM      PN+ T++T+LT    +F      
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFP----P 376

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           QIH+ +IK+N+E    VG++L+  Y+K     EA  +F+ + ++DVVS +A+++ YAQ G
Sbjct: 377 QIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 436

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVLRFEIPSYVVLQ 298
               A   F K+ + G+  N  T +S + A +  AA +  G+Q H+  ++      + + 
Sbjct: 437 DCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVS 496

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++L+ MY++ GS+  ++ VF+  ++R ++SWN+ML GY++HG  ++ +++F  M  E  +
Sbjct: 497 SALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEG-I 555

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGE 417
             D +T+L+V+ GC+H G+ + G   F  +V  +D G  P ++HY C+VD+  RAG++ E
Sbjct: 556 DMDGLTFLSVIMGCAHAGLVEEGQQYFDLMV--RDYGITPTMDHYACMVDLYSRAGKLDE 613

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
            +  I+ MPF     I  +LLGACRVH NV++G+   ++L+ +EP ++  YV+LSN+Y++
Sbjct: 614 TMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSA 673

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+W++   VR+LM  K V K+ G SWI++   +H F ASD+SHP+ E++ AK++ ++ K
Sbjct: 674 AGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAK 733

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+ GY PD S V +DV E+QKE +L  HSE+LAL FGLI TP  AP+ + KNLR+  D 
Sbjct: 734 LKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDG 793

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K VS++  R++ +RD  RFHH   G CSCGD+W
Sbjct: 794 HTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 3/296 (1%)

Query: 77  GQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G+++HA  ++  +    + + T L+  Y     + D RK+F+ M +RNVV+WT++++ Y 
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     + ++LF RM      PN FTF++VL+  A     +LG+ +H+  IK    S ++
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF 193

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V +SL++MYAK G + EAR VF  +  RD+VS   +++G    G D EA++LF   +   
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSI 253

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            +    TY++V+   + L  LG  +Q+HS VL+    SY  +  +L+D Y+K G L  + 
Sbjct: 254 TMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 316 RVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
            VF  MS  + V+SW AM+ G  ++G       LF+ MRE+  V P+ +TY  +L+
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDG-VAPNDLTYSTILT 368



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 169/336 (50%), Gaps = 13/336 (3%)

Query: 46  LIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           L+++ +L   MR E        + ++L+   +Q  +  GQ VHA  IK      V++   
Sbjct: 138 LLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNS 197

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y KC  + +AR +F  M  R++VSW  +++         EAL LF     S T   
Sbjct: 198 LMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLT 257

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E T++TV+  CA      L +Q+HS ++K  F S+  V ++L+D Y KAG++ +A  VF 
Sbjct: 258 ESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFL 317

Query: 219 CLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
            +   ++VVS TA+I G  Q G    A  LF +++ +G+  N +TY+++LT    ++   
Sbjct: 318 LMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEAS 373

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
              Q+H+ V++        +  +L+  YSK  S   +  +F  + ++ V+SW+AML  Y+
Sbjct: 374 FPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYA 433

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + G        F  M     +KP+  T  + +  C+
Sbjct: 434 QAGDCNGATNAFIKMTMHG-LKPNEFTISSAIDACA 468


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/608 (37%), Positives = 372/608 (61%), Gaps = 24/608 (3%)

Query: 28  PNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTL--LNACVNQRTLRGGQRVHAHMI 85
           PNP  L +L  +  L        TL  +  F  + TL  ++ C   + L+   ++HA M+
Sbjct: 4   PNP-CLVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLK---QIHAQML 59

Query: 86  KTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           +T      +  +RLI     +    L  A+++FD++   N+ +W  +I AY+  ++  ++
Sbjct: 60  RTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119

Query: 144 LNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202
           L +F+RML    + P++FTF  ++ + +       GK  H ++IK    S +++ +SL+ 
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIH 179

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
            YAK G +     VF   P RDVVS  ++I+ + Q G  EEA+ELF++++ + +  N +T
Sbjct: 180 FYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGIT 239

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
              VL+A +  +    G+ VHS++ R  I   + L N+++DMY+KCGS+  ++R+FD M 
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMP 299

Query: 323 ERTVISWNAMLVGYSK------------HGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           E+ ++SW  MLVGY+K            HG G++ + LF+ M +E+KVKP++VT+  +L 
Sbjct: 300 EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKM-QEDKVKPNAVTFTNILC 358

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+ + G   F+++ +   G  P ++HY C+VD+LGRAG + EA+E I+ MP  P 
Sbjct: 359 ACSHVGLVEEGRTFFNQM-ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA 417

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A++ G+LLGAC +H NV + E    +L+E+EP N G YV+LSN+YA AG+W+ V+ +R+L
Sbjct: 418 ASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKL 477

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           M++  + K+PG S IE+D I+H F   D SHP  +++ AK+ ++  + +  GYVP+ S +
Sbjct: 478 MRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHL 537

Query: 551 LYDVDEEQ-KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           L  V+EE  KE+ L  HSEKLA+ FGLI T +  PIR++KNLR+C DCH+ AK VSK+Y 
Sbjct: 538 LQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYD 597

Query: 610 RKVSLRDK 617
           R++ LRD+
Sbjct: 598 REILLRDR 605


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/582 (36%), Positives = 345/582 (59%), Gaps = 2/582 (0%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL +    +  +L AC      + G  +H+ ++K  +   V   T L+  Y+    L+DA
Sbjct: 106 GLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDA 165

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            K+F+E+ ER+VV+WTA+ S Y+      EA++LF +M+     P+ +    VL++C   
Sbjct: 166 HKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHV 225

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + G+ I   + +   + + +V ++L+++YAK G++ +AR VF+ + E+D+V+ + +I
Sbjct: 226 GDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMI 285

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
            GYA     +E IE F ++  E +  +  +    L++ + L AL  G+   S + R E  
Sbjct: 286 QGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + + + N+LIDMY+KCG++     VF  M E+ ++  NA + G +K+G  +    +F   
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG-Q 404

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            E+  + PD  T+L +L GC H G+   GL  F+ I  C    +  +EHYGC+VD+ GRA
Sbjct: 405 TEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAI-SCVYALKRTVEHYGCMVDLWGRA 463

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G + +A   I +MP  P A + G+LL  CR+  +  + E V + L+ +EP NAGNYV LS
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLS 523

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y+ +GRW++   VR++M  K + K PG SWIEL+  +H F A D+SHP+ +++ AK++
Sbjct: 524 NIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLE 583

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
            L  + +  G+VP    V +DV++E+KE+VL  HSEKLA+ FGLI T  G  IRV+KNLR
Sbjct: 584 DLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLR 643

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +C DCH   K +SK+  R++ +RD NRFH    G+CSC DYW
Sbjct: 644 VCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 180/352 (51%), Gaps = 4/352 (1%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F   +  N+  +  +I+ +       E L+LF+ + +     + FTF  VL +C  A  
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            +LG  +HSL++K  F   +   +SLL +Y+ +GR+++A  VFE +PER VV+ TA+ SG
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           Y   G   EAI+LF+K+   G+  +      VL+A   +  L  G+ +  H+   E+   
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKN 246

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
             ++ +L+++Y+KCG +  +R VFD+M E+ +++W+ M+ GY+ +   +E +E F  M +
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQ 306

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           EN +KPD  + +  LS C+  G  D G      ++D +  F   +     ++DM  + G 
Sbjct: 307 EN-LKPDQFSIVGFLSSCASLGALDLGEWGI-SLID-RHEFLTNLFMANALIDMYAKCGA 363

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRV-HYNVDIGEFVGQRLMEIEPENA 465
           +    E  K M  +    +  ++ G  +  H  +    F     + I P+ +
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 340/573 (59%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++V Y +   ++ AR +F+E+  +  V W AMIS Y Q     +A  LF RM+     
Sbjct: 238 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 297

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIK--SNF--ESHIYVGSSLLDMYAKAGRIHE 212
            +EFTF +VL++CA A  F  GK +H  II+   NF  E+ + V ++L+ +Y+K G+I  
Sbjct: 298 LDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVI 357

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG------MISNYV----- 261
           A+ +F+ +  +DVVS   I+SGY   G  ++A+E+F+ +  +       M+S YV     
Sbjct: 358 AKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLS 417

Query: 262 --------------------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
                               TYA  + A   L AL HG+Q+H+H+++    +     N+L
Sbjct: 418 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 477

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + MY+KCG++  +R VF  M     +SWNAM+    +HG GRE +ELF+ M  E  + PD
Sbjct: 478 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEG-IDPD 536

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +++L +L+ C+H G+ D G   F E +    G  P  +HY  ++D+LGR+GR+GEA + 
Sbjct: 537 RISFLTILTACNHAGLVDEGFHYF-ESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 595

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           IK MPFEPT +I  ++L  CR + +++ G +   +L  + P++ G Y++LSN Y++AGRW
Sbjct: 596 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRW 655

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            D  RVR+LM+++ V K+PG SWIE+   +H F   D  HP  +E+   ++ +  + ++ 
Sbjct: 656 VDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 715

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+D++  +KE +L  HSEKLA+ FGL+  P GA + V+KNLRIC DCH   
Sbjct: 716 GYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAM 775

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            F+SK  GR++ +RD  RFHH  +G CSCG+YW
Sbjct: 776 MFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK--TCYRPPVYL--RTRLIVFYNKCECLSDARKMF 116
           + ++L+AC N      G+ VH  +I+    + P   L     L+  Y+K   +  A+++F
Sbjct: 303 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 362

Query: 117 DEMRERNVVSWTA-------------------------------MISAYSQKAHSFEALN 145
           D M  ++VVSW                                 M+S Y     S +AL 
Sbjct: 363 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALK 422

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +M   D +P ++T+A  + +C      + G+Q+H+ +++  FE+    G++LL MYA
Sbjct: 423 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 482

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G +++AR VF  +P  D VS  A+IS   Q G   EA+ELF ++  EG+  + +++ +
Sbjct: 483 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 542

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           +LTA +    +  G      + R F I         LID+  + G +  +R +   M  E
Sbjct: 543 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 602

Query: 324 RTVISWNAMLVGYSKHG 340
            T   W A+L G   +G
Sbjct: 603 PTPSIWEAILSGCRTNG 619



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 139/327 (42%), Gaps = 73/327 (22%)

Query: 55  EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +MR E+       Y   + AC     L+ G+++HAH+++  +         L+  Y KC 
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            ++DAR +F  M   + VSW AMISA  Q  H  EAL LF +M+    +P+  +F T+LT
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545

Query: 168 SCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +C  A     GF   + +      S  E H    + L+D+  ++GRI EAR + + +P  
Sbjct: 546 ACNHAGLVDEGFHYFESMKRDFGISPGEDHY---ARLIDLLGRSGRIGEARDLIKTMPFE 602

Query: 224 DVVSC-TAIISGYAQLGLDE----EAIELFRKL-QVEGMISNYVTYASVLTALSGLAALG 277
              S   AI+SG    G  E     A +LFR + Q +G                      
Sbjct: 603 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDG---------------------- 640

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV-----ISW--- 329
                          +Y++L N+    YS  G    + RV   M +R V      SW   
Sbjct: 641 ---------------TYILLSNT----YSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 681

Query: 330 ----NAMLVGYSKHGMGREVVELFNLM 352
               +  LVG +KH   +EV +   ++
Sbjct: 682 GSKIHVFLVGDTKHPEAQEVYQFLEVI 708



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 42/282 (14%)

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDE 242
           + +S+ +      +SL+  +A AGR+ +A   F+ +P   RD V   A++S +A+  L  
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 243 EAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALG--HGKQVHSHVLRFEIPSYVVLQN 299
            A+ +F  L   G +  +  ++ ++++A+  +  L   H  Q+H  VL+    + + + N
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSN 204

Query: 300 SLIDMYSKCGSLTYS---RRVFDNMSERTVISWNAMLVGYSKH----------------- 339
           +LI +Y KC +   S   R+V D M ++  ++W  M+VGY +                  
Sbjct: 205 ALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKF 264

Query: 340 --------------GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
                         GM  +  ELF  M  E KV  D  T+ +VLS C++ G    G +V 
Sbjct: 265 DVVWNAMISGYVQSGMCADAFELFRRMVSE-KVPLDEFTFTSVLSACANAGFFVHGKSVH 323

Query: 386 HEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +I+  +  F PE  +     +V +  + G++  A      M
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365


>gi|302776458|ref|XP_002971391.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
 gi|300160523|gb|EFJ27140.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
          Length = 598

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 342/578 (59%), Gaps = 9/578 (1%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E Y  LL  C N+R L  G+RVH H+ +  Y    +L   L+  Y KC  + DA   FD 
Sbjct: 28  EAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAFDS 87

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +R++++ SW  MI+A+++      A+ +F  M  +  + N  TF  VL   A     E G
Sbjct: 88  IRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTFVAVL---AAGLDLEQG 144

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K+IH  +  S  E +  V ++LL MY   G   +AR VFE +P+ D+V   A+I+ Y Q 
Sbjct: 145 KKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAYVQN 204

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVV 296
               EA+E+F +L++EG+  N VTY + L A + LA    G+ +H  V      + S+ V
Sbjct: 205 DRGREALEIFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAGLLLTSFKV 264

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             NSLI+MY K G+L  +  +F++M  R + SWN +L  Y  +G+G   V+ F     E 
Sbjct: 265 -ANSLINMYGKSGNLEAAEEIFESMPSRDISSWNVLLTVYGHNGLGDLAVDRFTESCLEG 323

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             +PDS+T+LAVL  CSH G+ D G+ +   I +   G +P   HY CVVD+LGR+G + 
Sbjct: 324 -FEPDSITFLAVLQACSHAGLLDTGVELLVSIQE-DWGIDPTQYHYLCVVDLLGRSGELV 381

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
            A   I +MPFEP      SLLG CRV+ +V  GE   QRL+ +  E++  YV+++N+YA
Sbjct: 382 RAEALINSMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLL-VMSEDSSPYVLMANIYA 440

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S   ++   R+R +M ++ V K PG SWIE+   +HTF A+D+ H  +EE+ A + +L V
Sbjct: 441 SIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYAGLDRLFV 500

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + +  GY PD    LYDV+EE+K ++LL HSEKLA+ FGL+ TP+G+P+ V+KNLR+C D
Sbjct: 501 ELQREGYRPDTRVALYDVEEEKKVRMLLHHSEKLAIMFGLMSTPDGSPLFVLKNLRVCAD 560

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K ++K+  RK+ +RD +RFHH   G CSC DYW
Sbjct: 561 CHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 5/269 (1%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N   +A +L  CA       GK++H  + +  +E+  ++G+ L+ MY K   I +A   F
Sbjct: 26  NTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAF 85

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + + ++D+ S   +I+ +A+ G  + A+ +F  ++   +  N  T+ +VL A  GL  L 
Sbjct: 86  DSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTFVAVLAA--GL-DLE 142

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK++H  V    +    ++  +L+ MY  CGS   +R+VF+ + +  ++ WNAM+  Y 
Sbjct: 143 QGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAYV 202

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++  GRE +E+F+ +  E  VK + VTYLA L  C+   ++  G ++ H+ V        
Sbjct: 203 QNDRGREALEIFHRLEMEG-VKCNEVTYLAALDACACLAVQSEGRSL-HKRVSEAGLLLT 260

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +    +++M G++G +  A E  ++MP
Sbjct: 261 SFKVANSLINMYGKSGNLEAAEEIFESMP 289



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           + L  E   SN   YA++L   +    L  GK+VH H+ R+   +   L N L+ MY KC
Sbjct: 16  KDLGQERFCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKC 75

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            S+  +   FD++ ++ + SWN M+  ++++G     V +F LM E  ++K +  T++AV
Sbjct: 76  SSIDDAALAFDSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELM-EPARIKRNRGTFVAV 134

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           L+     G++       H+ V    G E        ++ M G  G   +A +  + +P
Sbjct: 135 LA----AGLDLEQGKKIHDSVH-SSGLERNEMVATALLSMYGACGSTDDARQVFEQVP 187


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 346/556 (62%), Gaps = 3/556 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA +IK+      ++  RL+  Y K     DA+++FDEM  +++VSW +++S  S + +
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 140 SFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
               LN F RM   S  +PNE T  +V+++CA     + GK +H +++K        V +
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 203

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL++MY K G +  A  +FE +P R +VS  +++  +   G  E+ ++LF  ++  G+  
Sbjct: 204 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 263

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +  T  ++L A +        + +H+++ R    + +++  +L+++Y+K G L  S  +F
Sbjct: 264 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 323

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           + + +R  I+W AML GY+ H  GRE ++LF+LM +E  V+ D VT+  +LS CSH G+ 
Sbjct: 324 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLV 382

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
           + G   F EI+      EP ++HY C+VD+LGR+GR+ +A E IK+MP EP++ + G+LL
Sbjct: 383 EEGKKYF-EIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 441

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
           GACRV+ NV++G+ V ++L+ ++P +  NY++LSN+Y++AG W D ++VR LMKE+ +T+
Sbjct: 442 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 501

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558
           +PG S+IE    +H F   D+ HP  +E+  K+++L  K +EAG  P    VL+D+DEE 
Sbjct: 502 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEV 561

Query: 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKN 618
           K  ++  HSEKLA+ FGL+ T  G P+ + KNLRIC DCH+ AKF S +  R + +RD  
Sbjct: 562 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 621

Query: 619 RFHHIVEGTCSCGDYW 634
           RFHH  +G CSC DYW
Sbjct: 622 RFHHFADGLCSCRDYW 637



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 155/294 (52%), Gaps = 13/294 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G+ +H  ++K        +   LI  Y K   L  A ++F+EM  R
Sbjct: 169 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR 228

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSW +M+  ++   ++ + ++LF  M R+   P++ T   +L +C         + IH
Sbjct: 229 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 288

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + I +  F + I + ++LL++YAK GR++ +  +FE + +RD ++ TA+++GYA      
Sbjct: 289 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGR 348

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK---QVHSHVLRFE--IPSYVVL 297
           EAI+LF  +  EG+  ++VT+  +L+A S    +  GK   ++ S V R E  +  Y   
Sbjct: 349 EAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--- 405

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE 347
            + ++D+  + G L  +  +  +M  E +   W A+L     +G   +G+EV E
Sbjct: 406 -SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 458



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           Y    S++ A+S   ++ +   +H+ V++    S   + + L+ MY K G    ++R+FD
Sbjct: 62  YSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 121

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  + ++SWN+++ G S  G     +  F  MR E+  +P+ VT L+V+S C+  G  D
Sbjct: 122 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 181

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G ++   +V  K G   + +    +++M G+ G +  A +  + MP
Sbjct: 182 EGKSLHGVVV--KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 226


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/532 (41%), Positives = 330/532 (62%), Gaps = 9/532 (1%)

Query: 109 LSDARKMFDEMRERNVVSW-TAMISAYSQKAHSF----EALNLFIRMLRSDTEPNEFTFA 163
           L+ AR++FD +     V W   ++  Y++         EA  +F+RM+     P+ +TF 
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA A   E G+Q H + +K+    H YV  +L++MYA+ G +  AR +F+ +   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            VVS  A+I+   +  L  EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ +H
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            ++ +  + S V +  +LIDMY+KCGSL  +  VF +M  R   +W+ M+V Y+ HG GR
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E + +F  M+++  +KPD VT+L VL  CSH GM   GL  F  + +   G    I+HYG
Sbjct: 323 EAISMFEEMKKQG-MKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREY--GIVSGIKHYG 379

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           CV D+L R+G++  A +FI  +P +PTA +  +LL AC  H +VD+G+ V +R++E++  
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           + G+YVI SNL A+ GRWE++  VR+LM EK V K PG S IE+D ++H F A D SHP 
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
            +E    V ++  + K  GYVP+ S V + ++ EE+K   L  HSEKLA++FGL+ T  G
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +R++KNLR+C DCH+ AK VS V+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  +  + M   G+      + +LL AC + R    G++ H   +K       Y+   LI
Sbjct: 121 EAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLI 180

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y +C  +  AR MFD M    VVS+ AMI+A  + +   EAL LF  M     +P   
Sbjct: 181 NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV 240

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           T  +VL++CA     ELG+ IH  I K   +S + V ++L+DMYAK G + +A GVF+ +
Sbjct: 241 TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
             RD  + + ++  YA  G   EAI +F +++ +GM  + VT+  VL A S    +  G 
Sbjct: 301 ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
           Q    +  + I S +     + D+ ++ G L  + +  D +  + T I W  +L   + H
Sbjct: 361 QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420

Query: 340 G---MGREVVE 347
           G   MG+ V E
Sbjct: 421 GDVDMGKRVFE 431


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 354/607 (58%), Gaps = 52/607 (8%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMRERNVVSWTAMISAYS 135
           +++H+  IKT       ++ +++ F    E   +  AR++FD + E +V SW  M   YS
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           + A     ++L++ ML  + +P+ +T+  +      +   +LG+++H  ++K   +S+++
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 196 VGSSLLDMYAKAGRIHEARGVFEC------------------------------------ 219
             ++L++MY+  G I  ARG+F+                                     
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210

Query: 220 ------------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                       +PERD VS TA+I GY +L   +EA+ LFR++Q   +  +  T  SVL
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           TA + L AL  G+ + +++ + ++ +   + N+LIDMY KCG++  +  +F+ + +R   
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF 330

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +W AM+VG + +G G E + +F+ M + + V PD VTY+ VLS C+H GM D G   F  
Sbjct: 331 TWTAMVVGLAINGCGEEALNMFSQMLKAS-VTPDEVTYVGVLSACTHTGMVDEGKKFFAS 389

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +   + G EP I HYGC+VD+LG+AG + EA E IKNMP +P + + G+LLGACR+H + 
Sbjct: 390 MT-ARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDA 448

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++ E   ++++E+EP N   YV+  N+YA+  +W+ +  +R++M ++ + K PG S IE+
Sbjct: 449 EMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEM 508

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           + I+H F A D+SHP  +E+  K+ +++   K AGY P+ S V  D+ EE KE  +  HS
Sbjct: 509 NGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHS 568

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLA+ FGLI +  G  IR++KNLR+C+DCH+ AK VSKVY R+V +RD+ RFHH   G+
Sbjct: 569 EKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGS 628

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 629 CSCKDYW 635



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 141/323 (43%), Gaps = 50/323 (15%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L         L+ G+ +H H++K      V+    LI  Y+ C  +  AR +FD   
Sbjct: 117 YPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSC 176

Query: 121 ERNVVSWTAMISAYSQKAHSF--------------------------------------- 141
           + +VV+W AMIS Y++                                            
Sbjct: 177 KSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMID 236

Query: 142 ---------EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
                    EAL LF  M  S  +P+EFT  +VLT+CA     ELG+ I + I K+  ++
Sbjct: 237 GYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKN 296

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
             +VG++L+DMY K G +  A  +F  LP+RD  + TA++ G A  G  EEA+ +F ++ 
Sbjct: 297 DTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQML 356

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
              +  + VTY  VL+A +    +  GK+   S   R  I   +     ++D+  K G L
Sbjct: 357 KASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHL 416

Query: 312 TYSRRVFDNMSER-TVISWNAML 333
             +  +  NM  +   I W A+L
Sbjct: 417 KEAHEIIKNMPMKPNSIVWGALL 439



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 1/185 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC     L  G+ +  ++ K   +   ++   LI  Y KC  +  A  +F+ + +R
Sbjct: 268 SVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQR 327

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +  +WTAM+   +      EALN+F +ML++   P+E T+  VL++C      + GK+  
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 183 -SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
            S+  +   E +I     ++D+  KAG + EA  + + +P +        + G  ++  D
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKD 447

Query: 242 EEAIE 246
            E  E
Sbjct: 448 AEMAE 452



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS--KCGSLTYSR 315
           S+ VT    L+      ++ H KQ+HS  ++  I    ++QN ++      + G + Y+R
Sbjct: 9   SSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYAR 68

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++FD + E +V SWN M  GYS+    +  V L+  M E N VKPD  TY  +  G +  
Sbjct: 69  QLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERN-VKPDCYTYPFLFKGFTRS 127

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
                G  +   +V  K G +  +  +  +++M    G +  A
Sbjct: 128 VALQLGRELHCHVV--KYGLDSNVFAHNALINMYSLCGLIDMA 168


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 344/610 (56%), Gaps = 13/610 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMI 85
           +  L  NG  + AL+E      EMR E        +     A  + R    G+++HA  +
Sbjct: 80  ISGLAQNGHFSTALVEF----FEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 135

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K      V++       Y K     DARK+FDE+ ERN+ +W A IS         EA+ 
Sbjct: 136 KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 195

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            FI   R D  PN  TF   L +C+      LG Q+H L+++S F++ + V + L+D Y 
Sbjct: 196 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 255

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K  +I  +  +F  +  ++ VS  ++++ Y Q   DE+A  L+ + + + + ++    +S
Sbjct: 256 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 315

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL+A +G+A L  G+ +H+H ++  +   + + ++L+DMY KCG +  S + FD M E+ 
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
           +++ N+++ GY+  G     + LF  M        P+ +T++++LS CS  G  + G+ +
Sbjct: 376 LVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 435

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F  +     G EP  EHY C+VDMLGRAG V  A EFIK MP +PT ++ G+L  ACR+H
Sbjct: 436 FDSMRSTY-GIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 494

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
               +G    + L +++P+++GN+V+LSN +A+AGRW +   VRE +K   + K  G SW
Sbjct: 495 GKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSW 554

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           I +   +H F A DRSH + +E+   + +L  + + AGY PD+   LYD++EE+K   + 
Sbjct: 555 ITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVS 614

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLAL FGL+  P   PIR+ KNLRIC DCH+F KFVS    R++ +RD NRFH   
Sbjct: 615 HHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFK 674

Query: 625 EGTCSCGDYW 634
           +G CSC DYW
Sbjct: 675 DGICSCKDYW 684



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 197/422 (46%), Gaps = 13/422 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL   ++  ++R G+ VHA ++KT    PP +L   LI  Y+K +    AR +      R
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSWT++IS  +Q  H   AL  F  M R    PN+FTF     + A       GKQIH
Sbjct: 72  NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +L +K      ++VG S  DMY K     +AR +F+ +PER++ +  A IS     G   
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAIE F + +      N +T+ + L A S    L  G Q+H  VLR    + V + N LI
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D Y KC  +  S  +F  M  +  +SW +++  Y ++    +   L+ L   ++ V+   
Sbjct: 252 DFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLY-LRSRKDIVETSD 310

Query: 363 VTYLAVLSGCSHGGMEDRGLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
               +VLS C+     + G ++  H +  C    E  I     +VDM G+ G + ++ + 
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKAC---VERTIFVGSALVDMYGKCGCIEDSEQA 367

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG---NYVILSNLYASA 478
              MP E       SL+G       VD+   + +   E+ P   G   NY+   +L ++ 
Sbjct: 368 FDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFE---EMAPRGCGPTPNYMTFVSLLSAC 423

Query: 479 GR 480
            R
Sbjct: 424 SR 425


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 355/579 (61%), Gaps = 10/579 (1%)

Query: 64  LLNACVNQRTLRGG-----QRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMF 116
           +L  C++   L G      +++HA  I+    P  P + +  +    +    +S A ++F
Sbjct: 33  ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGF 175
           ++++  N+ +W  MI  +++  +   A+ LF +M   S   P+  TF  +  + A     
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LG+ IHS+++++ F+S  +V +SL+ MY+  G    A  VFE +  RD V+  ++I+G+
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGF 212

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           A  G+  EA+ L+R++  EG+  +  T  S+L+A   L AL  G++VH ++++  +    
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
              N+L+D+YSKCG+   +++VFD M ER+V+SW +++VG + +G+G E ++LF  + E 
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL-ER 331

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             +KP  +T++ VL  CSH GM D G   F  + + + G  P IEH+GC+VD+L RAG+V
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKE-EYGILPRIEHHGCMVDLLCRAGKV 390

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
           G+A ++I+NMP  P A I  +LLGAC +H ++++GE     +  +E  ++G++V+LSNLY
Sbjct: 391 GDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLY 450

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           AS  RW DV  VR++M  K V K PG S +EL   ++ F   DRSHP  EE  A + +++
Sbjct: 451 ASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKIT 510

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
              K  GYVP    VL D++EE+KE  L  H+EK+A+ F L+ TP G PIR++KNLR+C 
Sbjct: 511 QLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCA 570

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +SKV+ R++ +RD++RFHH  +G+CSC DYW
Sbjct: 571 DCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL    EM + G+E       +LL+ACV    L  G+RVH +M+K       + 
Sbjct: 215 NGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y+KC    DA+K+FDEM ER+VVSWT++I   +      EAL LF  + R   
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 156 EPNEFTFATVLTSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           +P+E TF  VL +C+       G   F   K+ + ++ +   E H      ++D+  +AG
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR--IEHH----GCMVDLLCRAG 388

Query: 209 RIHEARGVFECLP 221
           ++ +A      +P
Sbjct: 389 KVGDAYDYIRNMP 401


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 342/578 (59%), Gaps = 11/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   L + +N   L  G+++H+H I++       + T +   Y KC  L  A  +F++M 
Sbjct: 114 YIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMS 173

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E+N V+WT ++  Y+Q     +AL LF +M+    E +E+ F+ VL +CAG      G+Q
Sbjct: 174 EKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQ 233

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  I+K   ES + VG+ L+D Y K   +  A   FE + E + VS +A+I+GY Q+G 
Sbjct: 234 IHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGE 293

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA++ F  L+   +  N  TY S+  A S LA    G Q H+  ++  + +Y   +++
Sbjct: 294 FEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESA 353

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           +I MYS+CG L Y+ RVF+++ +   ++W A++ GY+  G   E ++LF  M ++  V+P
Sbjct: 354 MITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM-QDCGVRP 412

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           ++VT++AVL+ CSH G+   G   + E +    G    I+HY C+VD+  RAG + EALE
Sbjct: 413 NAVTFIAVLTACSHSGLVIEGRQ-YLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALE 471

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            I++MPF P A     LLG C  + N++IGE   + L +++PE+   Y+++ NLYAS G+
Sbjct: 472 LIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGK 531

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL--SVKF 538
           W++   VR++M E+ + K+   SWI +   +H F   D+ HP  EE+ +K++ L  SV  
Sbjct: 532 WKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIK 591

Query: 539 KEAGYVP--DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           +E G +   D+S  L     E+KE++L+ HSE+LAL FGLI TP  AP+ V KNLR C D
Sbjct: 592 EETGLLTEEDVSNSL----PERKEQLLV-HSERLALAFGLISTPSSAPVVVFKNLRACKD 646

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH+F K VS + GR++ +RD  RFHH   G CSC DYW
Sbjct: 647 CHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 240/494 (48%), Gaps = 47/494 (9%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+ +    Y  L  AC   ++L  G+  H  M +T   PP +L   ++  Y KC  
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+DARK+FDEMRERN+VSW  +ISAY++     +   +F  ML  +T+PN  T+   L S
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                G E+GKQIHS  I+S   S+  V +++ +MY K G +  A  VFE + E++ V+ 
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAW 180

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T I+ GY Q     +A+ LF K+  EG+  +   ++ VL A +GL  L  G+Q+H H+++
Sbjct: 181 TGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK 240

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + S V +   L+D Y KC +L  + + F+ +SE   +SW+A++ GY + G   E ++ 
Sbjct: 241 LGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKT 300

Query: 349 FNLMREENKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDG--------- 394
           F  +R  + V  +S TY ++   CS     + G +    A+   +V  + G         
Sbjct: 301 FESLRTRS-VDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYS 359

Query: 395 -----------FE----PEIEHYGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGS 436
                      FE    P+   +  ++      G   EAL+  + M      P A    +
Sbjct: 360 RCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIA 419

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAG------NYVILSNLYASAGRWEDVTRVREL 490
           +L AC  H  + I    G++ +E    N G      +Y  + ++Y+ AG  ++     EL
Sbjct: 420 VLTACS-HSGLVIE---GRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEAL---EL 472

Query: 491 MKEKAVTKDPGRSW 504
           ++    + D   SW
Sbjct: 473 IRSMPFSPD-AMSW 485



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 2/290 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E+    +  +L AC     L  G+++H H++K      V + T L+ FY KC 
Sbjct: 202 KMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCS 261

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A K F+ + E N VSW+A+I+ Y Q     EAL  F  +     + N FT+ ++  
Sbjct: 262 NLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQ 321

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+    F  G Q H+  IKS+  ++ +  S+++ MY++ GR+  A  VFE + + D V+
Sbjct: 322 ACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVA 381

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHV 286
            TAII+GYA  G   EA++LFR++Q  G+  N VT+ +VLTA S    +  G+Q + S  
Sbjct: 382 WTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMS 441

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVG 335
             + + + +   + ++D+YS+ G L  +  +  +M      +SW  +L G
Sbjct: 442 SNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 28  PNPQNLKTL----CSNGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           PN  +   L    C  G+  +AL    +L    +++    Y ++  AC        G + 
Sbjct: 276 PNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQA 335

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           HA  IK+      +  + +I  Y++C  L  A ++F+ + + + V+WTA+I+ Y+ + ++
Sbjct: 336 HADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNA 395

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHSLIIKSNFESHIYVGSS 199
            EAL LF RM      PN  TF  VLT+C+ +     G+Q + S+       + I     
Sbjct: 396 PEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDC 455

Query: 200 LLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVE- 254
           ++D+Y++AG + EA  +   +P   D +S   ++ G   Y  L + E A E   +L  E 
Sbjct: 456 MVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPED 515

Query: 255 --GMISNYVTYAS 265
             G I  +  YAS
Sbjct: 516 TAGYILMFNLYAS 528


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 323/529 (61%), Gaps = 5/529 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR---SDTEPNEFTFATV 165
           L+ AR +FD M  R+  SW+A++SA+++      AL ++ RMLR   S    NEFT ++ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSA 168

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +   A     G+++H  +++   ++   V S+L DMYAK GR+ +AR VF+ +P RDV
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDV 228

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS TA++  Y     D E   LF ++   G+  N  TYA VL A +   +   GKQVH  
Sbjct: 229 VSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           + +         +++L+ MYSK G +  + RVF  M +  ++SW AM+ GY+++G   E 
Sbjct: 289 MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEA 348

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           +  F+++      +PD VT++ VLS C+H G+ D+GL++FH I D + G E   +HY CV
Sbjct: 349 LRYFDMLLRSG-CRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKD-EYGIEHTADHYACV 406

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+L R+G    A E I  M  +P   +  SLLG CR+H NV +  +  + L EIEPEN 
Sbjct: 407 IDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENP 466

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YV L+N+YAS G +++V   R +M+ K +TK P  SWIE+   +H F   D+ HP  E
Sbjct: 467 ATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAE 526

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           ++ A +K+L VK +E GYV D   VL+DV++EQK++ +  HSE+LA+ FG+I TP+GAPI
Sbjct: 527 QVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPI 586

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +V KNLRIC DCH   K +SK+  R++ +RD NRFHH   G+CSC DYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 2/265 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H H+++        + + L   Y KC  + DAR +FD M  R+VVSWTAM+  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E   LF+RMLRS  +PNEFT+A VL +CA     +LGKQ+H  + KS      + 
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFA 300

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            S+L+ MY+K G +  A  VF  +P+ D+VS TA+ISGYAQ G  +EA+  F  L   G 
Sbjct: 301 ESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGC 360

Query: 257 ISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
             ++VT+  VL+A +    +  G  + HS    + I         +ID+ S+ G    + 
Sbjct: 361 RPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAE 420

Query: 316 RVFDNMSER-TVISWNAMLVGYSKH 339
            + + MS +     W ++L G   H
Sbjct: 421 EMINTMSVKPNKFLWASLLGGCRIH 445



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 38/255 (14%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+  +  + M   G++     Y  +L AC    + + G++VH  M K+      +  + 
Sbjct: 244 DGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESA 303

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y+K   +  A ++F  M + ++VSWTAMIS Y+Q     EAL  F  +LRS   P+
Sbjct: 304 LVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPD 363

Query: 159 EFTFATVLTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAG--------- 208
             TF  VL++CA A   + G  I HS+  +   E      + ++D+ +++G         
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMI 423

Query: 209 -------------------RIHE--------ARGVFECLPERDVVSCTAIISGYAQLGLD 241
                              RIH+        A  +FE  PE      T + + YA +GL 
Sbjct: 424 NTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVT-LANIYASVGLF 482

Query: 242 EEAIELFRKLQVEGM 256
           +E     R ++++G+
Sbjct: 483 DEVENTRRIMELKGI 497


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 329/561 (58%), Gaps = 2/561 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           LR G+++HA  +K       ++ T L+  Y +C  L  A+++FDEM   + VSWTA+I+A
Sbjct: 134 LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 193

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y       EA+++      +   P+ FT   VLT+CA       G+ +     +      
Sbjct: 194 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQS 253

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V ++ +D+Y K G + +AR VF+ + ++D V+  A++ GYA  G   EA++LF  +Q 
Sbjct: 254 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 313

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           EG+  +    A  L+A + L AL  G+Q    V   E     VL  +LIDMY+KCGS   
Sbjct: 314 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 373

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +  VF  M ++ +I WNAM++G    G  +    L   M E++ VK +  T++ +L  C+
Sbjct: 374 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM-EKSGVKLNDNTFIGLLCSCT 432

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+   G   FH +        P IEHYGC+VD+L RAG + EA + I +MP    A I
Sbjct: 433 HTGLIQDGRRYFHNMTKLYH-ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 491

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
           LG+LLG C++H N ++ E V  +L+ +EP N+GNYV+LSN+Y++ GRWED  ++R  MKE
Sbjct: 492 LGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKE 551

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K V K P  SW+E +  +H F   D+SHP+ +++  K+ +L ++ K  GY P    V++D
Sbjct: 552 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 611

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           V++E+KE  L+ HSEKLA+ F L+ T  G  IRV KNLR+C DCH   K +S++  R++ 
Sbjct: 612 VEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREII 671

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           +RD NRFH   +G+CSC DYW
Sbjct: 672 VRDNNRFHCFRDGSCSCNDYW 692


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/541 (40%), Positives = 330/541 (60%), Gaps = 12/541 (2%)

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           RT +I    K   + +AR++FDEM ER+V++WT M++ Y Q     +A  +F  M     
Sbjct: 175 RTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----P 230

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           E  E ++ ++L         E  +++  ++ +K      +   ++++    + G I +AR
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKP-----VIACNAMISGLGQKGEIAKAR 285

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ + ER+  S   +I  + + G + EA++LF  +Q +G+   + T  S+L+  + LA
Sbjct: 286 RVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLA 345

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L HGKQVH+ ++R +    V + + L+ MY KCG L  S+ +FD    + +I WN+++ 
Sbjct: 346 SLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIIS 405

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY+ HG+G E +++F  M      KP+ VT++A LS CS+ GM + GL ++ E ++   G
Sbjct: 406 GYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIY-ESMESVFG 464

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            +P   HY C+VDMLGRAGR  EA+E I +M  EP AA+ GSLLGACR H  +D+ EF  
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCA 524

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           ++L+EIEPEN+G Y++LSN+YAS GRW DV  +R+LMK + V K PG SW E++  +H F
Sbjct: 525 KKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAF 584

Query: 515 -HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
                 SHP +E +   + +L    +EAGY PD S  L+DVDEE+K   L  HSE+LA+ 
Sbjct: 585 TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           + L+   EG PIRV+KNLR+C DCH   K +SKV  R++ LRD NRFHH   G CSC DY
Sbjct: 645 YALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDY 704

Query: 634 W 634
           W
Sbjct: 705 W 705



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 151/296 (51%), Gaps = 21/296 (7%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y K   + +ARK+FD M ERNVVSWTA++  Y        A +LF +M     E N
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM----PEKN 140

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLII-KSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           + ++  +L         +   +++ +I  K N        +S++    K GR+ EAR +F
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR-----TSMIHGLCKEGRVDEAREIF 195

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + + ER V++ T +++GY Q    ++A ++F  +  +      V++ S+L     +  + 
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSML-----MGYVQ 246

Query: 278 HGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           +G+   +  L   +P   V+  N++I    + G +  +RRVFD+M ER   SW  ++  +
Sbjct: 247 NGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
            ++G   E ++LF LM+++  V+P   T +++LS C+       G  V  ++V C+
Sbjct: 307 ERNGFELEALDLFILMQKQG-VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ 361



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            I M   G+   F    ++L+ C +  +L  G++VHA +++  +   VY+ + L+  Y K
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFAT 164
           C  L  ++ +FD    ++++ W ++IS Y+      EAL +F  M L   T+PNE TF  
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 165 VLTSCAGAFGFELGKQIH----SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
            L++C+ A   E G +I+    S+       +H    + ++DM  +AGR +EA  + + +
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHY---ACMVDMLGRAGRFNEAMEMIDSM 495



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 56/293 (19%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           ++ G+IHEAR +F+    + + S  ++++GY    +  +A +LF ++    +IS      
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIIS------ 81

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
                                             N L+  Y K G +  +R+VFD M ER
Sbjct: 82  ---------------------------------WNGLVSGYMKNGEIDEARKVFDLMPER 108

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V+SW A++ GY  +G       LF  M E+NK     V++  +L G    G  D    +
Sbjct: 109 NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNK-----VSWTVMLIGFLQDGRIDDACKL 163

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           +  I D  +     + H  C      + GRV EA E    M  E +     +++     +
Sbjct: 164 YEMIPDKDNIARTSMIHGLC------KEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQN 216

Query: 445 YNVDIGEFVGQRLMEIEPENAG-NYVILSNLYASAGRWEDVTRVRELMKEKAV 496
             VD      +++ ++ PE    ++  +   Y   GR ED   + E+M  K V
Sbjct: 217 NRVDD----ARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV 265



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 40/225 (17%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N  I   S+ G +  +R++FD+   +++ SWN+M+ GY  + M R+  +LF+ M + N +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 359 --------------------------KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
                                     + + V++ A++ G  H G  D   ++F ++    
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM---- 136

Query: 393 DGFEPEIEHYGCVVDMLG--RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
               PE       V ++G  + GR+ +A +  + +P +   A    + G C+    VD  
Sbjct: 137 ----PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCK-EGRVDEA 191

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
             +   + E    +   +  +   Y    R +D  ++ ++M EK 
Sbjct: 192 REIFDEMSE---RSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT 233


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 344/610 (56%), Gaps = 13/610 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMI 85
           +  L  NG  + AL+E      EMR E        +     A  + R    G+++HA  +
Sbjct: 30  ISGLAQNGHFSTALVEF----FEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 85

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K      V++       Y K     DARK+FDE+ ERN+ +W A IS         EA+ 
Sbjct: 86  KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 145

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            FI   R D  PN  TF   L +C+      LG Q+H L+++S F++ + V + L+D Y 
Sbjct: 146 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 205

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K  +I  +  +F  +  ++ VS  ++++ Y Q   DE+A  L+ + + + + ++    +S
Sbjct: 206 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 265

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL+A +G+A L  G+ +H+H ++  +   + + ++L+DMY KCG +  S + FD M E+ 
Sbjct: 266 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 325

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
           +++ N+++ GY+  G     + LF  M        P+ +T++++LS CS  G  + G+ +
Sbjct: 326 LVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 385

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F  +     G EP  EHY C+VDMLGRAG V  A EFIK MP +PT ++ G+L  ACR+H
Sbjct: 386 FDSMRSTY-GIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 444

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
               +G    + L +++P+++GN+V+LSN +A+AGRW +   VRE +K   + K  G SW
Sbjct: 445 GKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSW 504

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           I +   +H F A DRSH + +E+   + +L  + + AGY PD+   LYD++EE+K   + 
Sbjct: 505 ITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVS 564

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLAL FGL+  P   PIR+ KNLRIC DCH+F KFVS    R++ +RD NRFH   
Sbjct: 565 HHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFK 624

Query: 625 EGTCSCGDYW 634
           +G CSC DYW
Sbjct: 625 DGICSCKDYW 634



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 175/382 (45%), Gaps = 12/382 (3%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y+K +    AR +      RNVVSWT++IS  +Q  H   AL  F  M R    PN+FTF
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 61

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
                + A       GKQIH+L +K      ++VG S  DMY K     +AR +F+ +PE
Sbjct: 62  PCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPE 121

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           R++ +  A IS     G   EAIE F + +      N +T+ + L A S    L  G Q+
Sbjct: 122 RNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQL 181

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  VLR    + V + N LID Y KC  +  S  +F  M  +  +SW +++  Y ++   
Sbjct: 182 HGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHED 241

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF-HEIVDCKDGFEPEIEH 401
            +   L+ L   ++ V+       +VLS C+     + G ++  H +  C    E  I  
Sbjct: 242 EKASVLY-LRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC---VERTIFV 297

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
              +VDM G+ G + ++ +    MP E       SL+G       VD+   + +   E+ 
Sbjct: 298 GSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFE---EMA 353

Query: 462 PENAG---NYVILSNLYASAGR 480
           P   G   NY+   +L ++  R
Sbjct: 354 PRGCGPTPNYMTFVSLLSACSR 375



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY+K      AR V    P R+VVS T++ISG AQ G    A+  F +++ EG++ N  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           +     A++ L     GKQ+H+  ++      V +  S  DMY K      +R++FD + 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG-----GM 377
           ER + +WNA +      G  RE +E F   R  +   P+S+T+ A L+ CS       GM
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSITFCAFLNACSDWLHLNLGM 179

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           +  GL +       + GF+ ++     ++D  G+  ++
Sbjct: 180 QLHGLVL-------RSGFDTDVSVCNGLIDFYGKCKQI 210


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 329/561 (58%), Gaps = 2/561 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           LR G+++HA  +K       ++ T L+  Y +C  L  A+++FDEM   + VSWTA+I+A
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 146

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y       EA+++      +   P+ FT   VLT+CA       G+ +     +      
Sbjct: 147 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQS 206

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V ++ +D+Y K G + +AR VF+ + ++D V+  A++ GYA  G   EA++LF  +Q 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           EG+  +    A  L+A + L AL  G+Q    V   E     VL  +LIDMY+KCGS   
Sbjct: 267 EGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAE 326

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +  VF  M ++ +I WNAM++G    G  +    L   M E++ VK +  T++ +L  C+
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM-EKSGVKLNDNTFIGLLCSCT 385

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+   G   FH +        P IEHYGC+VD+L RAG + EA + I +MP    A I
Sbjct: 386 HTGLIQDGRRYFHNMTKLYH-ISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVI 444

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
           LG+LLG C++H N ++ E V  +L+ +EP N+GNYV+LSN+Y++ GRWED  ++R  MKE
Sbjct: 445 LGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKE 504

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K V K P  SW+E +  +H F   D+SHP+ +++  K+ +L ++ K  GY P    V++D
Sbjct: 505 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 564

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           V++E+KE  L+ HSEKLA+ F L+ T  G  IRV KNLR+C DCH   K +S++  R++ 
Sbjct: 565 VEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREII 624

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           +RD NRFH   +G+CSC DYW
Sbjct: 625 VRDNNRFHCFRDGSCSCNDYW 645


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/504 (40%), Positives = 323/504 (64%), Gaps = 2/504 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L   RK+F+ M +R++VSW  +IS  +Q     +AL +   M  +D  P+ FT ++VL  
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A       GK+IH   I++ +++ +++GSSL+DMYAK  R+ ++  VF  LP+ D +S 
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            +II+G  Q G+ +E ++ F+++ +  +  N+V+++S++ A + L  L  GKQ+H +++R
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                 V + ++L+DMY+KCG++  +R +FD M    ++SW AM++GY+ HG   + + L
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M  E  VKP+ V ++AVL+ CSH G+ D     F+ +        P +EHY  V D+
Sbjct: 386 FKRMEVEG-VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQ-DYRIIPGLEHYAAVADL 443

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR GR+ EA EFI +M  EPT ++  +LL ACRVH N+++ E V ++L  ++P+N G Y
Sbjct: 444 LGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAY 503

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+Y++AGRW+D  ++R  M++K + K P  SWIE+   +H F A D+SHP  + ++
Sbjct: 504 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRIN 563

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +K L  + +  GYV D + VL+DV+EEQK  +L  HSE+LA+TFG+I TP G  IRV 
Sbjct: 564 EALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVT 623

Query: 589 KNLRICVDCHNFAKFVSKVYGRKV 612
           KNLR+CVDCH   KF+SK+ GR++
Sbjct: 624 KNLRVCVDCHTATKFISKIVGREI 647



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 162/306 (52%), Gaps = 5/306 (1%)

Query: 39  NGQLTKALIEMATLG-LEMRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG    AL+ +  +G  ++R + +   ++L        L  G+ +H + I+  Y   V++
Sbjct: 174 NGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFI 233

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + LI  Y KC  + D+ ++F  + + + +SW ++I+   Q     E L  F +ML +  
Sbjct: 234 GSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKI 293

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +PN  +F++++ +CA      LGKQ+H  II+S F+ ++++ S+L+DMYAK G I  AR 
Sbjct: 294 KPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARW 353

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+ +   D+VS TA+I GYA  G   +AI LF++++VEG+  NYV + +VLTA S    
Sbjct: 354 IFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGL 413

Query: 276 LGHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           +    K  +S    + I   +    ++ D+  + G L  +     +M  E T   W+ +L
Sbjct: 414 VDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLL 473

Query: 334 VGYSKH 339
                H
Sbjct: 474 AACRVH 479


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 351/575 (61%), Gaps = 10/575 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC---ECLSDARKMFDEMR 120
           L++ C    +LR   ++ A+ IK+ +   V    +LI F  +      +S AR +F+ M 
Sbjct: 35  LISKC---NSLRELMQIQAYAIKS-HIEDVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E ++V + +M   YS+  +  E  +LF+ +L     P+ +TF ++L +CA A   E G+Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L +K   + ++YV  +L++MY +   +  AR VF+ + E  VV   A+I+GYA+   
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LFR++Q + +  N +T  SVL++ + L +L  GK +H +  +     YV +  +
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDM++KCGSL  +  +F+ M  +   +W+AM+V Y+ HG   + + +F  MR EN V+P
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN-VQP 329

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T+L +L+ CSH G  + G   F ++V  K G  P I+HYG +VD+L RAG + +A E
Sbjct: 330 DEITFLGLLNACSHTGRVEEGRKYFSQMVS-KFGIVPSIKHYGSMVDLLSRAGNLEDAYE 388

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  +P  PT  +   LL AC  H N+D+ E V +R+ E++  + G+YVILSNLYA   +
Sbjct: 389 FIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKK 448

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE V  +R++MK++   K PG S IE++ ++H F + D       +L   + ++  + K 
Sbjct: 449 WEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKL 508

Query: 541 AGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           +GYVPD S V++ ++++++KE  L  HSEKLA+TFGL+ TP G  IRV+KNLR+C DCHN
Sbjct: 509 SGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHN 568

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            AK +S ++GRKV LRD  RFHH  +G CSCGD+W
Sbjct: 569 AAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 151/282 (53%), Gaps = 2/282 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL AC   + L  G+++H   +K      VY+   LI  Y +CE +  AR +FD + 
Sbjct: 132 FPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV 191

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E  VV + AMI+ Y+++    EAL+LF  M     +PNE T  +VL+SCA     +LGK 
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH    K +F  ++ V ++L+DM+AK G + +A  +FE +  +D  + +A+I  YA  G 
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQN 299
            E+++ +F +++ E +  + +T+  +L A S    +  G++  S ++ +F I   +    
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371

Query: 300 SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           S++D+ S+ G+L  +    D +    T + W  +L   S H 
Sbjct: 372 SMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 341/586 (58%), Gaps = 5/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M T G+      +  +L AC +   L  GQ++HA + K C+    ++ T L+  Y KC  
Sbjct: 191 MRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGS 250

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  A  +FDEM  RN+VSW +MI  + +      A+ +F  +L     P++ + ++VL++
Sbjct: 251 MLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL--SLGPDQVSISSVLSA 308

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG    + GKQ+H  I+K      +YV +SL+DMY K G   +A  +F    +RDVV+ 
Sbjct: 309 CAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTW 368

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             +I G  +    E+A   F+ +  EG+  +  +Y+S+  A + +AAL  G  +HSHVL+
Sbjct: 369 NVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                   + +SL+ MY KCGS+  + +VF    E  V+ W AM+  + +HG   E ++L
Sbjct: 429 TGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKL 488

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M  E  V P+ +T+++VLS CSH G  D G   F+ + +  +  +P +EHY C+VD+
Sbjct: 489 FEEMLNEGVV-PEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN-IKPGLEHYACMVDL 546

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR GR+ EA  FI++MPFEP + + G+LLGAC  H NV++G  V +RL ++EP+N GNY
Sbjct: 547 LGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNY 606

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           ++LSN+Y   G  E+   VR LM    V K+ G SWI++      F+A+DRSH   +E+ 
Sbjct: 607 MLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIY 666

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             +++L    K  GYV +       V E  +E+ L  HSEKLAL FGL+  P G+P+R+ 
Sbjct: 667 GMLQKLKELIKRRGYVAETQFATNSV-EGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIK 725

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR C DCH   KF S+++ R++ +RD NRFH    G+CSC DYW
Sbjct: 726 KNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 216/464 (46%), Gaps = 39/464 (8%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-- 121
           LLN     ++L+   ++H+ ++ T     +     L++ Y KC  +     +F+      
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            NVV+WT +I+  S+    F+AL  F RM  +   PN FTF+ +L +CA A     G+QI
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+LI K  F +  +V ++LLDMYAK G +  A  VF+ +P R++VS  ++I G+ +  L 
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLY 282

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
             AI +FR  +V  +  + V+ +SVL+A +GL  L  GKQVH  +++  +   V ++NSL
Sbjct: 283 GRAIGVFR--EVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSL 340

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY KCG    + ++F    +R V++WN M++G  +     +    F  M  E  V+PD
Sbjct: 341 VDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG-VEPD 399

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEI-------------------------VDCKDGFE 396
             +Y ++    +      +G  +   +                         +D    F 
Sbjct: 400 EASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFR 459

Query: 397 PEIEH----YGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGACRVHYNVDI 449
              EH    +  ++ +  + G   EA++  + M  E   P      S+L AC     +D 
Sbjct: 460 ETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDD 519

Query: 450 GEFVGQRLMEIEPENAG--NYVILSNLYASAGRWEDVTRVRELM 491
           G      +  +     G  +Y  + +L    GR E+  R  E M
Sbjct: 520 GFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESM 563


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 344/556 (61%), Gaps = 3/556 (0%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA +IK+      ++  RL+  Y K     DA+++FDEM  R++VSW +++S  S + +
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 140 SFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
               LN F RM   S  +PNE T  +V+++CA     + GK +H +++K        V +
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           SL++MY K G +  A  +FE +P R +VS  +++  +   G  E+ ++LF  ++  G+  
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 340

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +  T  ++L A +        + +H+++ R    + +++  +L+++Y+K G L  S  +F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           + + +R  I+W AML GY+ H  GRE ++LF+LM +E  V+ D VT+  +LS CSH G+ 
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLV 459

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
           + G   F EI+      EP ++HY C+VD+LGR+GR+ +A E IK+MP EP++ + G+LL
Sbjct: 460 EEGKKYF-EIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 518

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
           GACRV+ NV++G+ V ++L+ ++P +  NY++LSN+Y++AG W   ++VR LMKE+ +T+
Sbjct: 519 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTR 578

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558
           +PG S+IE    +H F   D+ HP  +E+  K+++L  K  EAG  P    VL+D+DEE 
Sbjct: 579 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEV 638

Query: 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKN 618
           K  ++  HSEKLA+ FGL+ T  G P+ + KNLRIC DCH+ AKF S +  R + +RD  
Sbjct: 639 KVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSK 698

Query: 619 RFHHIVEGTCSCGDYW 634
           RFHH  +G CSC DYW
Sbjct: 699 RFHHFADGLCSCRDYW 714



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 154/294 (52%), Gaps = 13/294 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC     L  G+ +H  ++K        +   LI  Y K   L  A ++F+EM  R
Sbjct: 246 SVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR 305

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSW +M+  ++   ++ + ++LF  M R+   P++ T   +L +C         + IH
Sbjct: 306 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 365

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + I +  F + I + ++LL++YAK GR++ +  +FE + +RD ++ TA+++GYA      
Sbjct: 366 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGR 425

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK---QVHSHVLRFE--IPSYVVL 297
           EAI+LF  +  EG+  ++VT+  +L+A S    +  GK   ++ S V R E  +  Y   
Sbjct: 426 EAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY--- 482

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE 347
            + ++D+  + G L  +  +  +M  E +   W A+L     +G   +G+EV E
Sbjct: 483 -SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 535



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 3/177 (1%)

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           KL    ++++ +   S++ A+S   ++ +   +H+ V++    S   + + L+ MY K G
Sbjct: 130 KLHNSSLLADSIV-QSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLG 188

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
               ++R+FD M  R ++SWN+++ G S  G     +  F  MR E+  +P+ VT L+V+
Sbjct: 189 YDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVV 248

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           S C+  G  D G ++   +V  K G   + +    +++M G+ G +  A +  + MP
Sbjct: 249 SACAXMGALDEGKSLHGVVV--KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 303


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E  +T +  CV+    + G   H H++           T LI  Y KC  +  AR +FD 
Sbjct: 233 EVANTTMGRCVHAFGEKCGLAQHEHVV-----------TGLISLYAKCGDMECARHLFDR 281

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE-L 177
           M   ++V++ A+IS YS       ++ LF  ++     P+  T    L      FG E L
Sbjct: 282 MEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTL-VALIPVHSPFGHEPL 340

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
              +H+ ++K+  +++  V ++L  +Y +   +  AR  F+ +PE+ + S  A+ISGYAQ
Sbjct: 341 AGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQ 400

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL E A+ LF+++Q   +  N +T +S L+A + L AL  GK VH  +   ++   V +
Sbjct: 401 NGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYV 460

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +LIDMY KCGS+  +R +FD+M  + V+SWN M+ GY  HG G E ++L+  M + + 
Sbjct: 461 MTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAH- 519

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + P S T+L+VL  CSHGG+   G  VF  +     G  P IEH  C+VD+LGRAG++ E
Sbjct: 520 LHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTS-DYGITPGIEHCTCMVDLLGRAGQLKE 578

Query: 418 ALEFIKNMPFEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           A E I   P       I G+LLGAC VH + D+ +   Q+L E+EPEN G YV+LSNLY 
Sbjct: 579 AFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYT 638

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S  ++ +   VR+  K + + K PG + IE+    H F A DR+HP  + +   +++L+ 
Sbjct: 639 SKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTA 698

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K  EAGY PD    LYDV+EE+KE ++  HSEKLA+ FGL+ T  G  IR+IKNLR+C+D
Sbjct: 699 KMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLD 758

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CHN  K +SKV  R + +RD +RFHH  +G CSCGDYW
Sbjct: 759 CHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 174/340 (51%), Gaps = 8/340 (2%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA  + + +    ++ + L   Y      +DARK+FD +   + V W  +++  S    
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS-- 202

Query: 140 SFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
             EAL  F+RM  + +  P+  T A+VL + A      +G+ +H+   K     H +V +
Sbjct: 203 --EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVT 260

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
            L+ +YAK G +  AR +F+ +   D+V+  A+ISGY+  G+   ++ELF++L   G+  
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +  T  +++   S          +H+HV++  + +   +  +L  +Y +   +  +RR F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           D M E+T+ SWNAM+ GY+++G+    V LF  M+  N V+P+ +T  + LS C+  G  
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALN-VRPNPLTISSALSACAQLGAL 439

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             G  V H+I+   +  E  +     ++DM  + G + EA
Sbjct: 440 SLGKWV-HKII-ANEKLELNVYVMTALIDMYVKCGSIAEA 477



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 175/394 (44%), Gaps = 54/394 (13%)

Query: 151 LRSD---TEPNEFTFATVLTSCAGA----------FGFELGKQIHSLIIKSNFESHIYVG 197
           LR+D     P+ F+FA   TS A +                + +H+L + S F +  +V 
Sbjct: 102 LRADLLFPSPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVA 161

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           S+L  +Y    R ++AR VF+ +P  D V    +++G +      EA+E F ++   G +
Sbjct: 162 SALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSV 217

Query: 258 -SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T ASVL A + +A    G+ VH+   +  +  +  +   LI +Y+KCG +  +R 
Sbjct: 218 RPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARH 277

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV-------- 368
           +FD M    ++++NA++ GYS +GM    VELF  +     ++P S T +A+        
Sbjct: 278 LFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMG-LRPSSSTLVALIPVHSPFG 336

Query: 369 ---LSGCSHGGMEDRGLAV--------------FHEIVDCKDGFE--PE--IEHYGCVVD 407
              L+GC H  +   GL                F+++   +  F+  PE  +E +  ++ 
Sbjct: 337 HEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMIS 396

Query: 408 MLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
              + G    A+   + M      P    + S L AC     + +G++V  +++  E   
Sbjct: 397 GYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWV-HKIIANEKLE 455

Query: 465 AGNYVI--LSNLYASAGRWEDVTRVRELMKEKAV 496
              YV+  L ++Y   G   +   + + M  K V
Sbjct: 456 LNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNV 489


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 353/604 (58%), Gaps = 37/604 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC   ++   G+++H H+IKT       L   LI  Y KC  + DA  +F+++  R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +SW ++++A +Q       L++F  M + D  +P+ + FA ++ +CA     + GKQ+H+
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             I S       V SSL+DMYAK G     R VF+ +  ++ +S TA+ISGYAQ G   +
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLD 189

Query: 244 AIELFRKLQVEGMIS------------NYV--------------------TYASVLTALS 271
           AI+LF+K+ V+ ++S            N+V                      +S++ A +
Sbjct: 190 AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASA 249

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA LG GKQ+H  V+     S + + N+L+DMY+KC  +  ++++F  M +R ++SW +
Sbjct: 250 NLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTS 309

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++VG ++HG+  E + L+N M     +KP+ VT++ ++  CSH G+  +G   F+ ++  
Sbjct: 310 IIVGTAQHGLAEEALSLYNRMLSTG-LKPNEVTFVGLIYACSHVGLVSKGRYFFNSMI-- 366

Query: 392 KD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
           KD G  P ++HY C++D+L R+G + EA   IK MPF+P  A   +LL AC  H N  IG
Sbjct: 367 KDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIG 426

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
             V   L+ ++PE+   Y++LSN+YASA  WE V++VR LM    V K+PG S I L + 
Sbjct: 427 IRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKE 486

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
              F A + SHP +EE+   +++L  + K+ GY+PD S VL+D+++++KE+ L  HSE+L
Sbjct: 487 SQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERL 546

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GL+    G  + ++KNLR+C DCH   KF+S +  R++ +RD NR+HH  +G CSC
Sbjct: 547 AVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSC 606

Query: 631 GDYW 634
            ++W
Sbjct: 607 NNFW 610



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 16/218 (7%)

Query: 33  LKTLCSNGQLTKALIEMAT------LGLEMRFEEYD--------TLLNACVNQRTLRGGQ 78
           +K L S   L   L++         L +EMR +  D        +++ A  N   L  G+
Sbjct: 199 VKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGK 258

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           ++H  +I   Y   +++   L+  Y KC  +  A+K+F  M +R++VSWT++I   +Q  
Sbjct: 259 QIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHG 318

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVG 197
            + EAL+L+ RML +  +PNE TF  ++ +C+       G+   + +IK       +   
Sbjct: 319 LAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHY 378

Query: 198 SSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG 234
           + LLD+ +++G + EA  + + +P + D  +  A++S 
Sbjct: 379 TCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA 416


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/656 (35%), Positives = 374/656 (57%), Gaps = 52/656 (7%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVN 70
           ++S TF     ++P   P+P+      SN +  K+L +   + L  R    + +L     
Sbjct: 15  YASTTFAA---SLPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLP---- 67

Query: 71  QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
                    +HA +I+  +    ++   L+   +KC  +  A ++F      NV  +TA+
Sbjct: 68  ---------IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTAL 118

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           I  +    +  EA+ L+ RML     P+ +  A++L +C        G+++HS  +K  F
Sbjct: 119 IDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGF 178

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA------ 244
            S+  V   ++++Y K G + +AR VFE +PE DVV+ T +IS Y+  GL EEA      
Sbjct: 179 SSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSR 237

Query: 245 -------------------------IELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
                                    +E FR +Q E +  N  T   VL+A S L AL  G
Sbjct: 238 VRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 297

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           + VHS++ +FEI   + + N+LI+MYS+CGS+  ++ VFD M +R VI++N M+ G S +
Sbjct: 298 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 357

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPE 398
           G  R+ +ELF +M    +++P +VT++ VL+ CSHGG+ D G  +FH +   +D   EP+
Sbjct: 358 GKSRQAIELFRVMVGR-RLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMA--RDYRVEPQ 414

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           IEHYGC+VD+LGR GR+ EA + I+ M   P   +LG+LL AC++H N+++GE V + L 
Sbjct: 415 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELE 474

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           +    ++G YV+LS++YAS+G+W++  +VR  MKE  + K+PG S IE++  +H F   D
Sbjct: 475 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 534

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP +E +  K+++L+   +  GY P+   VL D+++ +KE  L  HSE+LA+ +GLI 
Sbjct: 535 LRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLIS 594

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           T     IRV+KNLR+C DCH+  K ++K+  RK+ +RD+NRFH+   G CSCGDYW
Sbjct: 595 TEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/507 (42%), Positives = 314/507 (61%), Gaps = 2/507 (0%)

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
            +MI  Y+       ++ ++ +M ++   P+  TF TVL S A     ELGK IH  II+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
             FES++YV ++L++MY     + +AR VF+ +P+R++VS  A+I+GY    +  + I++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           FR++Q+ G     VT   VL A + L AL  G+ +  ++    +   V +  +LIDMY+K
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG +  + ++F  M  + V +WN ++ GY+ +G G   ++ F+ M  E K KPD VT+L 
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIME-KFKPDEVTFLG 349

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VL  C H G+ + G   F  + + + G  P IEHYGC+VD+LGRAG + EA + I+ M  
Sbjct: 350 VLCACCHQGLVNEGRTYFTSMKE-EFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM 408

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
           +P   I   LLGACR+H N+ +GEF  ++L+E+EP N  NYV+L+NLYA   RW+ V  V
Sbjct: 409 QPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           RE+M  + V K PG S IE+D +++ F  S+   P  EE+   +  ++ K K AGYV D 
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADT 528

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
               YD++EE+KE  L+ HSEKLAL FGL+ +P G  +R++KNLRIC DCH F K VSKV
Sbjct: 529 GMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKV 588

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           Y R +S+RD+NRFHH V G CSC DYW
Sbjct: 589 YRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 12/339 (3%)

Query: 10  AFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALI--EMATLGLEMRFEEYDTLLNA 67
           A S+L FTQ    + S   N        SN  L    I  +M   G+      + T+L +
Sbjct: 92  AASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKS 151

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
                    G+ +H  +I+  +   VY+ T L+  Y  C  +SDAR++FDE+ +RN+VSW
Sbjct: 152 VAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSW 211

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
            A+I+ Y+      + +++F  M  +  +P E T   VL +CA       G+ I   I  
Sbjct: 212 NALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDH 271

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           +    +++VG++L+DMYAK G + EA  +F+ +  ++V +   +ISGYA  G  E A++ 
Sbjct: 272 NRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQA 331

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV-----LRFEIPSYVVLQNSLI 302
           F ++ +E    + VT+  VL A      +  G+   + +     LR  I  Y      ++
Sbjct: 332 FSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHY----GCMV 387

Query: 303 DMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           D+  + G L  ++++   MS +   I W  +L     HG
Sbjct: 388 DLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHG 426



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 106/198 (53%), Gaps = 3/198 (1%)

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
           C ++I  Y        ++ ++ ++   G+  +  T+ +VL +++ L     GK +H  ++
Sbjct: 110 CNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCII 169

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +    S V +  +L++MY  C S++ +R+VFD + +R ++SWNA++ GY+ + M R+V++
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F  M+     KP  VT + VL  C+H G  ++G  +  + +D  +     +     ++D
Sbjct: 230 VFREMQIAG-AKPVEVTMVGVLLACAHLGALNQGRWI-DDYID-HNRLRLNVFVGTALID 286

Query: 408 MLGRAGRVGEALEFIKNM 425
           M  + G V EA +  K M
Sbjct: 287 MYAKCGVVDEAEKIFKAM 304


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 338/573 (58%), Gaps = 38/573 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++LNA      LR G+++H  +I   +   V++   L   Y KC  +  AR +FD + ++
Sbjct: 160 SILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKK 219

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VSW  MIS Y++     + + L  +M  S   P++ T +T++ +              
Sbjct: 220 NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-------------- 265

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                                Y + GR+ EAR VF    E+D+V  TA++ GYA+ G +E
Sbjct: 266 ---------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+ LF ++ +E +  +  T +SV+++ + LA+L HG+ VH   +   + + +++ ++LI
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG +  +R VF+ M  R V+SWNAM+VG +++G  ++ +ELF  M ++ K KPD+
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ-KFKPDN 423

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ +LS C H    ++G   F  I + + G  P ++HY C+V++LGR GR+ +A+  I
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSITN-QHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           KNM  +P   I  +LL  C    ++   E   + L E++P  A  Y++LSN+YAS GRW+
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV  VR LMK K V K  G SWIE+D  +H F + DR+HP  E++  K+  L  K +E G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG-APIRVIKNLRICVDCHNFA 601
           + P+ + VL+DV E++K K +  HSEKLAL FGLI  P G +PIR+IKN+RIC DCH F 
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF S++ GR++ LRD NRFHH   G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 210/447 (46%), Gaps = 71/447 (15%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  L+  CV    +   +R+ +HM    ++P   +L  +L+  Y K   L DA+ +FD
Sbjct: 23  EAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFD 82

Query: 118 EMRERNVVSWTAMISAYSQKAH------SF-------------------------EALNL 146
           +M +R++ SW A++SAY++         +F                         E+L L
Sbjct: 83  KMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLEL 142

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F RM R   EP E+T  ++L + A       GKQIH  II  NF  ++++ ++L DMYAK
Sbjct: 143 FKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAK 202

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G I +AR +F+CL ++++VS   +ISGYA+ G  E+ I L  ++++ G + + VT +++
Sbjct: 203 CGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTI 262

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           + A                                   Y +CG +  +RRVF    E+ +
Sbjct: 263 IAA-----------------------------------YCQCGRVDEARRVFSEFKEKDI 287

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           + W AM+VGY+K+G   + + LFN M  E+ ++PDS T  +V+S C+       G AV  
Sbjct: 288 VCWTAMMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           + +    G    +     ++DM  + G + +A      MP     +    ++G  +  ++
Sbjct: 347 KSI--LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHD 404

Query: 447 VDIGEFVGQRLME-IEPENAGNYVILS 472
            D  E     L +  +P+N     ILS
Sbjct: 405 KDALELFENMLQQKFKPDNVTFIGILS 431


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 358/605 (59%), Gaps = 11/605 (1%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ--RTLRGGQRVHAHMIKTCYRPPVYL 95
           SN ++ + L++M   GL +      + L AC +    ++  G+ +H   +K      V +
Sbjct: 201 SNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVV 260

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK---AHSF--EALNLFIRM 150
            T L+  Y K   L DA K+F  M + NVV + AMI+ + Q    A  F  EA+ LF  M
Sbjct: 261 GTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEM 320

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                +P+EFTF+++L +C+    FE GKQIH+ I K N +S  ++G++L+++Y+ +G I
Sbjct: 321 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSI 380

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +    F   P+ DVVS T++I G+ Q G  E  + LF +L   G   +  T + +L+A 
Sbjct: 381 EDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSAC 440

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + LAA+  G+Q+H++ ++  I ++ ++QNS I MY+KCG +  +   F       ++SW+
Sbjct: 441 ANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWS 500

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
            M+   ++HG  +E V+LF LM+    + P+ +T+L VL  CSHGG+ + GL  F EI+ 
Sbjct: 501 VMISSNAQHGCAKEAVDLFELMKGSG-IAPNHITFLGVLVACSHGGLVEEGLRYF-EIMK 558

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              G  P ++H  C+VD+LGRAGR+ EA  FI +  FE    +  SLL ACRVH   D G
Sbjct: 559 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 618

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           + V +R++E+EPE A +YV+L N+Y  AG     T +R LMK++ V K+PG SWIE+  +
Sbjct: 619 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 678

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG-HSEK 569
           +H+F A DRSHP  + +  +++++  + K+  Y+ D   V    + + K+  ++  HSEK
Sbjct: 679 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEK 737

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+TFG+I  P  AP+RV+KNLR C  CH   K  S++  R++ LRD  RFH   +G+CS
Sbjct: 738 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 797

Query: 630 CGDYW 634
           CGDYW
Sbjct: 798 CGDYW 802



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 173/329 (52%), Gaps = 8/329 (2%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           LGL +    Y  L+       +L  G+  H HMIKTC++P ++L   L+  Y KC     
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDV 72

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A+K+FD M +RNVVSW ++IS Y+Q     E +NLF     SD   ++FTF+  L+ C  
Sbjct: 73  AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGR 132

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                LG+ IH+LI  S     + + +SL+DMY K GRI  AR VFE   E D VS  ++
Sbjct: 133 TLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSL 192

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG--LAALGHGKQVHSHVLRF 289
           I+GY ++G ++E + L  K+   G+  N     S L A      +++  GK +H   ++ 
Sbjct: 193 IAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKL 252

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-----HGMGRE 344
            +   VV+  +L+D Y+K G L  + ++F  M +  V+ +NAM+ G+ +          E
Sbjct: 253 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 312

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCS 373
            + LF  M+    +KP   T+ ++L  CS
Sbjct: 313 AMYLFFEMQSRG-MKPSEFTFSSILKACS 340


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 358/605 (59%), Gaps = 11/605 (1%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ--RTLRGGQRVHAHMIKTCYRPPVYL 95
           SN ++ + L++M   GL +      + L AC +    ++  G+ +H   +K      V +
Sbjct: 122 SNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVV 181

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK---AHSF--EALNLFIRM 150
            T L+  Y K   L DA K+F  M + NVV + AMI+ + Q    A  F  EA+ LF  M
Sbjct: 182 GTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEM 241

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                +P+EFTF+++L +C+    FE GKQIH+ I K N +S  ++G++L+++Y+ +G I
Sbjct: 242 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSI 301

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +    F   P+ DVVS T++I G+ Q G  E  + LF +L   G   +  T + +L+A 
Sbjct: 302 EDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSAC 361

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + LAA+  G+Q+H++ ++  I ++ ++QNS I MY+KCG +  +   F       ++SW+
Sbjct: 362 ANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWS 421

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
            M+   ++HG  +E V+LF LM+    + P+ +T+L VL  CSHGG+ + GL  F EI+ 
Sbjct: 422 VMISSNAQHGCAKEAVDLFELMKGSG-IAPNHITFLGVLVACSHGGLVEEGLRYF-EIMK 479

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              G  P ++H  C+VD+LGRAGR+ EA  FI +  FE    +  SLL ACRVH   D G
Sbjct: 480 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 539

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           + V +R++E+EPE A +YV+L N+Y  AG     T +R LMK++ V K+PG SWIE+  +
Sbjct: 540 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 599

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG-HSEK 569
           +H+F A DRSHP  + +  +++++  + K+  Y+ D   V    + + K+  ++  HSEK
Sbjct: 600 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEK 658

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+TFG+I  P  AP+RV+KNLR C  CH   K  S++  R++ LRD  RFH   +G+CS
Sbjct: 659 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 718

Query: 630 CGDYW 634
           CGDYW
Sbjct: 719 CGDYW 723



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 173/321 (53%), Gaps = 8/321 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +   L+ C     LR G+ +HA +  +    PV L   LI  Y KC  +  AR +F+   
Sbjct: 44  FSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESAD 103

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF--GFELG 178
           E + VSW ++I+ Y +   + E L L ++MLR     N +   + L +C   F    E G
Sbjct: 104 ELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG 163

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K +H   +K   +  + VG++LLD YAK G + +A  +F+ +P+ +VV   A+I+G+ Q+
Sbjct: 164 KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 223

Query: 239 GL--DE---EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
               DE   EA+ LF ++Q  GM  +  T++S+L A S + A   GKQ+H+ + ++ + S
Sbjct: 224 ETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQS 283

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
              + N+L+++YS  GS+    + F +  +  V+SW +++VG+ ++G     + LF+ + 
Sbjct: 284 DEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 343

Query: 354 EENKVKPDSVTYLAVLSGCSH 374
              + KPD  T   +LS C++
Sbjct: 344 FSGR-KPDEFTISIMLSACAN 363



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 8/262 (3%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RNVVSW ++IS Y+Q     E +NLF     SD   ++FTF+  L+ C       LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH+LI  S     + + +SL+DMY K GRI  AR VFE   E D VS  ++I+GY ++
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSG--LAALGHGKQVHSHVLRFEIPSYVV 296
           G ++E + L  K+   G+  N     S L A      +++  GK +H   ++  +   VV
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-----HGMGREVVELFNL 351
           +  +L+D Y+K G L  + ++F  M +  V+ +NAM+ G+ +          E + LF  
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 352 MREENKVKPDSVTYLAVLSGCS 373
           M+    +KP   T+ ++L  CS
Sbjct: 241 MQSRG-MKPSEFTFSSILKACS 261


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 347/597 (58%), Gaps = 3/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G   +A+     + +E     + ++L+AC N   L  G+++HA +        + L+  
Sbjct: 202 SGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNA 261

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +C+CL DA K+F  +  R+VVSW+AMI+A+++     EA+  + +M      PN
Sbjct: 262 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 321

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +TFA+VL +CA       G+ +H  I+ + ++  +  G++L+D+Y   G + EAR +F+
Sbjct: 322 YYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD 381

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALG 277
            +  RD    T +I GY++ G     +EL+R+++    + +  + Y+ V++A + L A  
Sbjct: 382 QIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFA 441

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
             +Q HS +    + S  VL  SL++MYS+ G+L  +R+VFD MS R  ++W  ++ GY+
Sbjct: 442 DARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYA 501

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           KHG     + L+  M  E   +P  +T++ VL  CSH G++++G  +F  I        P
Sbjct: 502 KHGEHGLALGLYKEMELEG-AEPSELTFMVVLYACSHAGLQEQGKQLFISI-QSDYAMHP 559

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            I HY C++D+L RAGR+ +A E I  MP EP      SLLGA R+H +V        ++
Sbjct: 560 NIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQI 619

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            +++P +  +YV+LSN++A  G    +  VR  M  + V K  G SWIE+   +H F+  
Sbjct: 620 TKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVG 679

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D SHP  +E+ A++++LS K KEAGYVP+   VL+DV E++KE +L  HSEKLA+ FGLI
Sbjct: 680 DNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLI 739

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G  +R+   LRIC DCH+  KF+S +  R++ +RD +RFH   +G CSCGDYW
Sbjct: 740 ATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 224/443 (50%), Gaps = 10/443 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRP 91
           L     NG    AL     + L+     Y T+L AC +   L  G+ +H+ +  T   + 
Sbjct: 96  LTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKL 155

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMR-ERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
            V L   L+  Y KC  L DA+++F+ M   R+V SW AMI+AY+Q  H  EA+ L+  M
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM 215

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
              D EP+  TF +VL++C+     + G++IH+LI     E  + + ++LL MYA+   +
Sbjct: 216 ---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCL 272

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +A  +F+ LP RDVVS +A+I+ +A+  L +EAIE + K+Q+EG+  NY T+ASVL A 
Sbjct: 273 DDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 332

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + +  L  G+ VH  +L       +V   +L+D+Y+  GSL  +R +FD +  R    W 
Sbjct: 333 ASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWT 392

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIV 389
            ++ GYSK G    V+EL+  M+   KV    + Y  V+S C S G   D   A  H  +
Sbjct: 393 VLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA--HSDI 450

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVD 448
           +  DG   +      +V+M  R G +  A +    M    T A    + G A    + + 
Sbjct: 451 EA-DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLA 509

Query: 449 IGEFVGQRLMEIEPENAGNYVIL 471
           +G +    L   EP      V+L
Sbjct: 510 LGLYKEMELEGAEPSELTFMVVL 532



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 233/483 (48%), Gaps = 52/483 (10%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   L  C +  ++R   ++H   I       V+L   ++  Y KC  ++ AR  FD + 
Sbjct: 30  YRDALRQCQDLESVR---QIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIA 85

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +N  SW +M++AY+Q  H   AL+L+ RM   D +PN   + TVL +CA     E GK 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKA 142

Query: 181 IHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQL 238
           IHS I  +   +  + + +SLL MYAK G + +A+ +FE +   R V S  A+I+ YAQ 
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQS 202

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  EEAI L+  + VE  +    T+ SVL+A S L  L  G+++H+ +        + LQ
Sbjct: 203 GHFEEAIRLYEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQ 259

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+L+ MY++C  L  + ++F  +  R V+SW+AM+  +++  +  E +E ++ M+ E  V
Sbjct: 260 NALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG-V 318

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P+  T+ +VL  C+  G    G AV  +I+   +G++  + +   +VD+    G + EA
Sbjct: 319 RPNYYTFASVLLACASVGDLRAGRAVHDQIL--GNGYKITLVNGTALVDLYTSYGSLDEA 376

Query: 419 -------------------------------LEFIKNMPFEPTAAILGSLLGACRVHYNV 447
                                          LE  + M    T      ++ +C +    
Sbjct: 377 RSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK-NTTKVPATKIIYSCVISACA 435

Query: 448 DIGEFVGQRLMEIEPENAG---NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            +G F   R    + E  G   ++V+ ++L     RW ++   R++  +K  ++D   +W
Sbjct: 436 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVF-DKMSSRDT-LAW 493

Query: 505 IEL 507
             L
Sbjct: 494 TTL 496


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 347/597 (58%), Gaps = 3/597 (0%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G   +A+     + +E     + ++L+AC N   L  G+++HA +        + L+  
Sbjct: 201 SGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNA 260

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +C+CL DA K+F  +  R+VVSW+AMI+A+++     EA+  + +M      PN
Sbjct: 261 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 320

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +TFA+VL +CA       G+ +H  I+ + ++  +  G++L+D+Y   G + EAR +F+
Sbjct: 321 YYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD 380

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALG 277
            +  RD    T +I GY++ G     +EL+R+++    + +  + Y+ V++A + L A  
Sbjct: 381 QIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFA 440

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
             +Q HS +    + S  VL  SL++MYS+ G+L  +R+VFD MS R  ++W  ++ GY+
Sbjct: 441 DARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYA 500

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           KHG     + L+  M  E   +P  +T++ VL  CSH G++++G  +F  I        P
Sbjct: 501 KHGEHGLALGLYKEMELEG-AEPSELTFMVVLYACSHAGLQEQGKQLFISI-QSDYAMHP 558

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
            I HY C++D+L RAGR+ +A E I  MP EP      SLLGA R+H +V        ++
Sbjct: 559 NIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQI 618

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
            +++P +  +YV+LSN++A  G    +  VR  M  + V K  G SWIE+   +H F+  
Sbjct: 619 TKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVG 678

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D SHP  +E+ A++++LS K KEAGYVP+   VL+DV E++KE +L  HSEKLA+ FGLI
Sbjct: 679 DNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLI 738

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G  +R+   LRIC DCH+  KF+S +  R++ +RD +RFH   +G CSCGDYW
Sbjct: 739 ATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 225/442 (50%), Gaps = 9/442 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRP 91
           L     NG    AL     + L+     Y T+L AC + + L  G+ +H+ +  T   + 
Sbjct: 96  LTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKL 155

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
            V L   L+  Y KC  L DA+++F+ M  R+V SW AMI+AY+Q  H  EA+ L+  M 
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM- 214

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
             D EP+  TF +VL++C+     + G++IH+LI     E  + + ++LL MYA+   + 
Sbjct: 215 --DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 272

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A  +F+ LP RDVVS +A+I+ +A+  L +EAIE + K+Q+EG+  NY T+ASVL A +
Sbjct: 273 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            +  L  G+ VH  +L       +V   +L+D+Y+  GSL  +R +FD +  R    W  
Sbjct: 333 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 392

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVD 390
           ++ GYSK G    V+EL+  M+   KV    + Y  V+S C S G   D   A  H  ++
Sbjct: 393 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA--HSDIE 450

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG-ACRVHYNVDI 449
             DG   +      +V+M  R G +  A +    M    T A    + G A    + + +
Sbjct: 451 A-DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLAL 509

Query: 450 GEFVGQRLMEIEPENAGNYVIL 471
           G +    L   EP      V+L
Sbjct: 510 GLYKEMELEGAEPSELTFMVVL 531



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 233/482 (48%), Gaps = 51/482 (10%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   L  C +  ++R   ++H   I       V+L   ++  Y KC  ++ AR  FD + 
Sbjct: 30  YRDALRQCQDLESVR---QIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIA 85

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +N  SW +M++AY+Q  H   AL+L+ RM   D +PN   + TVL +CA     E GK 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKA 142

Query: 181 IHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           IHS I  +   +  + + +SLL MYAK G + +A+ +FE +  R V S  A+I+ YAQ G
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSG 202

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             EEAI L+  + VE  +    T+ SVL+A S L  L  G+++H+ +        + LQN
Sbjct: 203 HFEEAIRLYEDMDVEPSVR---TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 259

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L+ MY++C  L  + ++F  +  R V+SW+AM+  +++  +  E +E ++ M+ E  V+
Sbjct: 260 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG-VR 318

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA- 418
           P+  T+ +VL  C+  G    G AV  +I+   +G++  + +   +VD+    G + EA 
Sbjct: 319 PNYYTFASVLLACASVGDLRAGRAVHDQILG--NGYKITLVNGTALVDLYTSYGSLDEAR 376

Query: 419 ------------------------------LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                                         LE  + M    T      ++ +C +     
Sbjct: 377 SLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK-NTTKVPATKIIYSCVISACAS 435

Query: 449 IGEFVGQRLMEIEPENAG---NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           +G F   R    + E  G   ++V+ ++L     RW ++   R++  +K  ++D   +W 
Sbjct: 436 LGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVF-DKMSSRDT-LAWT 493

Query: 506 EL 507
            L
Sbjct: 494 TL 495


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/576 (39%), Positives = 352/576 (61%), Gaps = 11/576 (1%)

Query: 65   LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
            L++C   + L  GQ+VH   +K        +   L+  Y +C  +SD  K+F+ M E + 
Sbjct: 488  LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 125  VSWTAM--ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VSW  M  + A SQ   S E + +F  M+R    PN+ TF  +L + +     ELGKQ+H
Sbjct: 548  VSWNTMMGVMASSQTPIS-EIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 183  SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLD 241
            + ++K        V ++L+  YAK+G +     +F  + +R D +S  ++ISGY   G  
Sbjct: 607  AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 242  EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            +EA++    +   G I +  T++ +L A + +AAL  G ++H+  +R  + S VV++++L
Sbjct: 667  QEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESAL 726

Query: 302  IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
            +DMYSKCG + Y+ ++F++M++R   SWN+M+ GY++HG+GR+ +E+F  M    +  PD
Sbjct: 727  VDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRE-SPD 785

Query: 362  SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             VT+++VLS CSH G+ +RGL  F  + D   G  P+IEHY CV+D+LGRAG++ +  E+
Sbjct: 786  HVTFVSVLSACSHAGLVERGLEYFEMMPD--HGILPQIEHYSCVIDLLGRAGKIDKIKEY 843

Query: 422  IKNMPFEPTAAILGSLLGACRVH---YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            I+ MP EP A I  ++L ACR      N+D+G    + L+EIEP+N  NYV+ SN +A+ 
Sbjct: 844  IQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAAT 903

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
            G WED  + R  M++    K+ GRSW+ L+  +HTF A DRSHP  +E+  K+  L    
Sbjct: 904  GMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNI 963

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            + AGYVP     LYD++EE KE++L  HSEKLA+ F L  +  G PIR++KNLR+C DCH
Sbjct: 964  RNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLRVCGDCH 1022

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
               +++S++  R++ LRD  RFHH  +G CSCGDYW
Sbjct: 1023 IAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 189/379 (49%), Gaps = 10/379 (2%)

Query: 54  LEMRFEEYDTLLNA----CVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCEC 108
           +++  + Y  LL+A     +++  LR G+ VH HM++T      + +   L+  Y KC  
Sbjct: 371 VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGA 430

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  A K+F  M   + +SW  +ISA  Q  +  EA+  +  M +S   P+ F   + L+S
Sbjct: 431 IESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSS 490

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H   +K   +    V + L+ MY + G + +   VF  + E D VS 
Sbjct: 491 CAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSW 550

Query: 229 TAIISGYAQLGLD-EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             ++   A       E +++F  +   G+I N VT+ ++L ALS L+ L  GKQVH+ V+
Sbjct: 551 NTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVM 610

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVV 346
           +  +    V+ N+LI  Y+K G +     +F NMS+ R  ISWN+M+ GY  +G  +E +
Sbjct: 611 KHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAM 670

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +   LM    ++  D  T+  +L+ C+     +RG+ +       +   E ++     +V
Sbjct: 671 DCVWLMIHSGQIM-DCCTFSIILNACASVAALERGMEL--HAFGIRSHLESDVVVESALV 727

Query: 407 DMLGRAGRVGEALEFIKNM 425
           DM  + GRV  A +   +M
Sbjct: 728 DMYSKCGRVDYASKLFNSM 746



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 165/328 (50%), Gaps = 21/328 (6%)

Query: 75  RGG-----QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           RGG     + +H  +IK      ++L   L+  Y K   L+ A ++FDEM ERN VSWT 
Sbjct: 73  RGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTC 132

Query: 130 MISAYSQKAHSFEALNLFIRMLR---SDTEPNEFTFATVLTSCAGAFGFELG--KQIHSL 184
           ++S Y     + EA  +F  MLR   +   P  FTF T+L +C       LG   Q+H L
Sbjct: 133 LVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGL 192

Query: 185 IIKSNFESHIYVGSSLLDMYAK--AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + K+ + S+  V ++L+ MY     G    A+ VF+  P RD+++  A++S YA+ G   
Sbjct: 193 VSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVA 252

Query: 243 EAIELFRKLQ-----VEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVV 296
               LF+ +Q     ++   + + T+ S++TA S  +       QV   VL+    S + 
Sbjct: 253 STFTLFKDMQRGDSRIQLRPTEH-TFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLY 311

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + ++L+  +++ G    ++ +F ++ ++  ++ N ++VG  +     E V++F   R  N
Sbjct: 312 VGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR--N 369

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V  ++ TY+ +LS  +   + + GL +
Sbjct: 370 TVDVNADTYVVLLSALAEYSISEEGLRI 397



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 169/343 (49%), Gaps = 29/343 (8%)

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           ++K+     +Y+ + L+  + +     +A+ +F  ++++N V+   +I    ++  S EA
Sbjct: 301 VLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEA 360

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNF-ESHIYVGS 198
           + +F+   R+  + N  T+  +L++ A       G  +G+ +H  ++++   +  I V +
Sbjct: 361 VKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSN 419

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
            L++MYAK G I  A  +F+ +   D +S   IIS   Q G  EEA+  +  ++   +  
Sbjct: 420 GLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISP 479

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +     S L++ +GL  L  G+QVH   +++ +     + N L+ MY +CG+++   +VF
Sbjct: 480 SNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVF 539

Query: 319 DNMSERTVISWNAML-VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS---- 373
           ++M+E   +SWN M+ V  S      E+V++FN M     + P+ VT++ +L+  S    
Sbjct: 540 NSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLI-PNKVTFINLLAALSPLSV 598

Query: 374 -------------HGGMEDRGLAVFHEIVDC--KDGFEPEIEH 401
                        HG MED    V + ++ C  K G     EH
Sbjct: 599 LELGKQVHAAVMKHGVMEDN--VVDNALISCYAKSGDMGSCEH 639



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 14/320 (4%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + +H  +IK      +++ + L++ YAK  R+  A  VF+ +PER+ VS T ++SGY   
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 239 GLDEEAIELFRKLQVE---GMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPS 293
           G+ EEA  +FR +  E   G      T+ ++L A    G   LG   QVH  V + E  S
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 294 YVVLQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              + N+LI MY  C  G    ++RVFD    R +I+WNA++  Y+K G       LF  
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 352 MREEN---KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           M+  +   +++P   T+ ++++  S        L      V  K G   ++     +V  
Sbjct: 261 MQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWV-LKSGCSSDLYVGSALVSA 319

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEIEPENAGN 467
             R G   EA +   ++  +    + G ++G  R  ++ + +  FVG R       NA  
Sbjct: 320 FARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR--NTVDVNADT 377

Query: 468 YVILSNLYASAGRWEDVTRV 487
           YV+L +  A     E+  R+
Sbjct: 378 YVVLLSALAEYSISEEGLRI 397



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 3/186 (1%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG L +A+     M   G  M    +  +LNAC +   L  G  +HA  I++     V +
Sbjct: 663 NGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVV 722

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y+KC  +  A K+F+ M +RN  SW +MIS Y++     +A+ +F  MLRS  
Sbjct: 723 ESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRE 782

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+  TF +VL++C+ A   E G +   ++        I   S ++D+  +AG+I + + 
Sbjct: 783 SPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKE 842

Query: 216 VFECLP 221
             + +P
Sbjct: 843 YIQRMP 848


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 337/574 (58%), Gaps = 2/574 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC        G  +H+ + KT +   V+++T ++ FY+KC  L DA K+FD+M 
Sbjct: 107 FSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMV 166

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +NVVSWT MI    +     EA++LF  +L S   P+ F    VL +CA     E G+ 
Sbjct: 167 VKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRW 226

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I   + +     +++V +SL+DMY K G + EAR VF+ + E+D+V  +A+I GYA  GL
Sbjct: 227 IDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGL 286

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EAIELF +++   +  +       L++ + L AL  G      +   E  S  VL  S
Sbjct: 287 PREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTS 346

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LID Y+KCGS+  +  V+  M E+  + +NA++ G + +G       +F  M +   + P
Sbjct: 347 LIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFG-IPP 405

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  T++ +L GC+H G+ D G   F+ +        P IEHYGC+VD+L RAG + EA  
Sbjct: 406 NEHTFVGLLCGCTHAGLVDDGRHYFNSMSH-DFSVTPTIEHYGCMVDLLARAGFLDEAHN 464

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            IK MP +    + GSLLG CR+H    + E V ++L+E+EP N+G+YV+LSN+Y+++ R
Sbjct: 465 LIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRR 524

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           W++  ++R  + EK + K PG SW+E+D ++H F   D SHP+ +++  K++ L    KE
Sbjct: 525 WDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKE 584

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
           AGY P    VL+DV+EE+KE  L  HSEKLA+ F LI T     IRV+KNLR+C DCH  
Sbjct: 585 AGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEA 644

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +SKV GR++ +RD NRFH   +G CSC DYW
Sbjct: 645 IKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 13/308 (4%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N   +  MI     K     A++L+  M ++   P+ FTF+ VL +CA    F LG  IH
Sbjct: 68  NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIH 127

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           SL+ K+ F+  ++V ++++  Y+K G + +A  VF+ +  ++VVS T +I G  + G   
Sbjct: 128 SLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFR 187

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LFR L   G+  +      VL A + L  L  G+ +   +    +   V +  SL+
Sbjct: 188 EAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLV 247

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCGS+  +R VFD M E+ ++ W+AM+ GY+ +G+ RE +ELF  MR+ N V+PD 
Sbjct: 248 DMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVN-VRPDC 306

Query: 363 VTYLAVLSGC-SHGGME----DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
              +  LS C S G +E     +GL  + E +       P +     ++D   + G + E
Sbjct: 307 YAMVGALSSCASLGALELGNWAKGLMNYEEFLS-----NPVLG--TSLIDFYAKCGSMEE 359

Query: 418 ALEFIKNM 425
           AL   K M
Sbjct: 360 ALGVYKMM 367


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 347/586 (59%), Gaps = 3/586 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           MA+ G+      Y  +L AC     LR G+      +   Y   V++   ++  Y KC  
Sbjct: 96  MASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGK 155

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +A ++FD+M  R++V WT MI+  +Q   + EA++++ +M +   E +      ++ +
Sbjct: 156 MDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQA 215

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C      ++G  IH  +I+ +    + V +SL+DMYAK G +  A  VF  +  ++V+S 
Sbjct: 216 CTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISW 275

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           +A+ISG+AQ G    A++L   +Q  G   + V+  SVL A S +  L  GK VH +++R
Sbjct: 276 SALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR 335

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +    V   ++IDMYSKCGSL+++R VFD +S R  ISWNA++  Y  HG G E + L
Sbjct: 336 -RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSL 394

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  MRE N VKPD  T+ ++LS  SH G+ ++G   F  +V+ +   +P  +HY C+VD+
Sbjct: 395 FLQMRETN-VKPDHATFASLLSAFSHSGLVEKGRYWFSIMVN-EYKIQPSEKHYACMVDL 452

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           L RAGRV EA E I++M  EP  AI  +LL  C  H    IGE   ++++E+ P++ G Y
Sbjct: 453 LSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIY 512

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
            ++SN +A+A RW++V  VR++MK+  + K PG S +E++  LH F   D+SH   EE+ 
Sbjct: 513 SLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIM 572

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             + +L  + K  GYVP    VL++++EE KE++L  HSE+LA+ FGL+ T  G  + + 
Sbjct: 573 QVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLIT 632

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   KF+SK+  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 633 KNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 110/200 (55%), Gaps = 9/200 (4%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G   + +++M + G +       ++L AC     L+ G+ VH ++++  +   V   T +
Sbjct: 289 GNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVS-STAV 347

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           I  Y+KC  LS AR +FD++  R+ +SW A+I++Y       EAL+LF++M  ++ +P+ 
Sbjct: 348 IDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDH 407

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIK----SNFESHIYVGSSLLDMYAKAGRIHEARG 215
            TFA++L++ + +   E G+   S+++        E H    + ++D+ ++AGR+ EA+ 
Sbjct: 408 ATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY---ACMVDLLSRAGRVEEAQE 464

Query: 216 VFECL-PERDVVSCTAIISG 234
           + E +  E  +    A++SG
Sbjct: 465 LIESMITEPGIAIWVALLSG 484


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/623 (39%), Positives = 360/623 (57%), Gaps = 58/623 (9%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC----LSDARKMFDEMR 120
           +N C   RT+R   ++HA  IK+           ++ F    +     L  A K+F++M 
Sbjct: 23  INTC---RTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP 79

Query: 121 ERNVVSWTAMISAYSQ--KAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFEL 177
           +RN  SW  +I  +S+  +  +  A+ LF  M+  +  EPN FTF +VL +CA     + 
Sbjct: 80  QRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQ 139

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA------------------------ 213
           GKQIH L +K  F    +V S+L+ MY   G + +A                        
Sbjct: 140 GKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDG 199

Query: 214 ---------------------RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
                                R +F+ + +R VVS   +ISGY+Q G  ++A+E+FR+++
Sbjct: 200 EVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMK 259

Query: 253 V-EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             E +  NYVT  SVL A+S L +L  G+ +H +     I    VL ++LIDMYSKCG +
Sbjct: 260 KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 319

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
             +  VF+ +    VI+W+AM+ G++ HG   + ++ F  MR+   V+P  V Y+ +L+ 
Sbjct: 320 EKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTA 378

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           CSH G+ + G   F ++V   DG EP IEHYGC+VD+LGR G + EA EFI NMP +P  
Sbjct: 379 CSHAGLVEEGRRYFSQMVSV-DGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDD 437

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
            I  +LLGACR+H NV++G+ V   LM++ P ++G YV LSN+YAS G W +V+ +R  M
Sbjct: 438 VIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 497

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           KE  + KDPG SWI++D +LH F   D SHP  +E+++ + ++S K + AGY P  + VL
Sbjct: 498 KEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVL 557

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
            +++EE KE  L  HSEK+A  FGLI T  G PIR++KNLRIC DCH+  K +SKVY RK
Sbjct: 558 LNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRK 617

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +++RD+ RFHH  +G+CSC DYW
Sbjct: 618 ITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 67/124 (54%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A     +L  G+ +H +   +  R    L + LI  Y+KC  +  A  +F+ +   
Sbjct: 273 SVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRE 332

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NV++W+AMI+ ++    + +A++ F +M ++   P++  +  +LT+C+ A   E G++  
Sbjct: 333 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYF 392

Query: 183 SLII 186
           S ++
Sbjct: 393 SQMV 396


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 354/611 (57%), Gaps = 39/611 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +++       L  G+++HA ++   +   + + T LI  Y KC    +AR++FD+M+
Sbjct: 210 YINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMK 269

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R++VSW  MI  Y       EAL L+ ++     +  + TF ++L +C+       G+ 
Sbjct: 270 KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRL 329

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +HS I++   +S + V ++L++MYAK G + EAR VF  +  RD V+ + +I  YA  G 
Sbjct: 330 VHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGY 389

Query: 241 DEEA----------------------------------IELFRKLQ-VEGMISNYVTYAS 265
            ++A                                  +++FR++    G+  + VT+ +
Sbjct: 390 GKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIA 449

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL A + L  L   K +H+ +   E+ S VV+ N+LI+MY++CGSL  + R+F    E+T
Sbjct: 450 VLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT 509

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V+SW AM+  +S++G   E ++LF  M  E  VKPD VTY ++L  C+HGG  ++G   F
Sbjct: 510 VVSWTAMVAAFSQYGRYAEALDLFQEMDLEG-VKPDDVTYTSILFVCTHGGSLEQGWRYF 568

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
            ++ +      P  +H+  +VD+LGR+GR+ +A E +++MPFEP      + L ACR+H 
Sbjct: 569 TDMAELH-ALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHG 627

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
            +++GE   +R+ E++P +   Y+ +SN+YA+ G WE V  VR+ M+E+ + K PG S+I
Sbjct: 628 KLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFI 687

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           E+D  LH F +  + HP  +E+  ++ +L    + AGYVPD   VL+DV E +KE +LL 
Sbjct: 688 EVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLY 747

Query: 566 HSEKLALTFGLIGT-PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI- 623
           HSEK+A+ FGL+ +   G PIRV+KNLR+C DCH   KF++++ GR + +RD NRFH   
Sbjct: 748 HSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFS 807

Query: 624 VEGTCSCGDYW 634
            +G CSCGDYW
Sbjct: 808 SDGKCSCGDYW 818



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 208/417 (49%), Gaps = 43/417 (10%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG  T+AL+    M   GL      + ++L AC    +L  G+ +H  +  +       L
Sbjct: 88  NGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNRVFYSGLDSFQSL 144

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +   + DA++MF  ++ R+  SW A+I A+SQ      AL +F  M + D 
Sbjct: 145 ANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDV 203

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +PN  T+  V++  +       G++IH+ I+ + F++ + V ++L++MY K G  HEAR 
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEARE 263

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VF+ + +RD+VS   +I  Y   G   EA+EL++KL +EG      T+ S+L A S + A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT----------------------- 312
           L  G+ VHSH+L   + S V +  +L++MY+KCGSL                        
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 313 -----------YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
                       +R+VFD +  R  ISWNAM+  Y ++G     +++F  M     +KPD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +VT++AVL  C+  G      A+  +I + +   E  +     +++M  R G + EA
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESE--LESNVVVTNTLINMYARCGSLEEA 498



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 203/380 (53%), Gaps = 10/380 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--R 120
           T+L +C +   +  G+ +H  +  + +     +   LI  Y KC+ L DAR +F+ M  R
Sbjct: 12  TVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWR 71

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +RNVVSW AMI+AY+Q  HS EAL L+ RM       +  TF +VL +C+       G++
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGRE 128

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ +  S  +S   + ++L+ MYA+ G + +A+ +F+ L  RD  S  A+I  ++Q G 
Sbjct: 129 IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGD 188

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              A+ +F++++ + +  N  TY +V++  S    L  G+++H+ ++     + +V+  +
Sbjct: 189 WSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATA 247

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI+MY KCGS   +R VFD M +R ++SWN M+  Y  +G   E +EL+  +  E   K 
Sbjct: 248 LINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG-FKR 306

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
              T++++L  CS      +G  V   I++   G + E+     +V+M  + G + EA +
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILE--RGLDSEVAVATALVNMYAKCGSLEEARK 364

Query: 421 FIKNMPFEPTAAILGSLLGA 440
               M      A   +L+GA
Sbjct: 365 VFNAMKNRDAVA-WSTLIGA 383



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 191/379 (50%), Gaps = 46/379 (12%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           D +P+  TF TVL SC+       G+ +H  I  S FE    VG++L+ MY K   + +A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 214 RGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           R VFE +   +R+VVS  A+I+ YAQ G   EA+ L+ ++ ++G+ +++VT+ SVL A S
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA    G+++H+ V    + S+  L N+L+ MY++ GS+  ++R+F ++  R   SWNA
Sbjct: 122 SLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           +++ +S+ G     + +F  M+ +  VKP+S TY+ V+SG S   +   G  +  EIV  
Sbjct: 179 VILAHSQSGDWSGALRIFKEMKCD--VKPNSTTYINVISGFSTPEVLPEGRKIHAEIV-- 234

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP------------------------- 426
            +GF+ ++     +++M G+ G   EA E    M                          
Sbjct: 235 ANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALE 294

Query: 427 ---------FEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLY 475
                    F+ T A   S+LGAC     +  G  V   ++E  ++ E A     L N+Y
Sbjct: 295 LYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA-VATALVNMY 353

Query: 476 ASAGRWEDVTRVRELMKEK 494
           A  G  E+  +V   MK +
Sbjct: 354 AKCGSLEEARKVFNAMKNR 372



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL+     +  +L AC +   L   + +HA + ++     V +   LI  Y +C  L +A
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
            ++F   +E+ VVSWTAM++A+SQ     EAL+LF  M     +P++ T+ ++L  C   
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHG 558

Query: 173 FGFELG-------KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERD 224
              E G        ++H+L   ++   H    ++++D+  ++GR+ +A+ + E +P E D
Sbjct: 559 GSLEQGWRYFTDMAELHALAPTAD---HF---AAMVDLLGRSGRLFDAKELLESMPFEPD 612

Query: 225 VVSCTAIISG---YAQLGLDEEAIE 246
            V+    ++    + +L L E A E
Sbjct: 613 PVAWMTFLTACRIHGKLELGEAAAE 637


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 329/559 (58%), Gaps = 2/559 (0%)

Query: 77  GQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G ++HA  ++  Y P   ++    +  Y K  CL+ AR++FDEM  RNVV+W A+++   
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAV 198

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 E +  +  +  +   PN  +      +CAG     LG+Q +  + K  F   + 
Sbjct: 199 LDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVS 258

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V +S++D Y K   + +AR VF+ +  R+ VS  +++  YAQ G +EEA  ++   +  G
Sbjct: 259 VSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAG 318

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
                   +SVLT  +GL  L  G+ +H+  +R  I S + + ++L+DMY KCG +  + 
Sbjct: 319 EEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAE 378

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VF  M +R +++WNAM+ GY+  G     + +F+ M    +  P+ +T + VL+ CS G
Sbjct: 379 QVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRG 438

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G  +F + +  + G EP IEHY CVVD+L RAG    A + I+ MP  P+ ++ G
Sbjct: 439 GLTKEGYELF-QTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWG 497

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLG C++H   ++G    ++L E++P+++GN+V+LSN+ ASAGRW + T VR+ MK   
Sbjct: 498 ALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVG 557

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + KDPGRSWI    ++H F A D +H M  E+ A + +L  + + AGY+PD    LYD++
Sbjct: 558 IKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLE 617

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+KE  +  HSEKLAL FGLI  P G PIR++KNLRICVDCH   KF+S + GR++ +R
Sbjct: 618 EEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVR 677

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D N FHH     CSC DYW
Sbjct: 678 DNNMFHHFKNYECSCKDYW 696



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 193/422 (45%), Gaps = 14/422 (3%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           + A +  R+ R G+  HA  ++      P +L   L+  Y+K +    A           
Sbjct: 24  VEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPT 83

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL-TSCAGAFGFELGKQIH 182
           VVS+TA IS  +Q A   +AL+ F  MLR    PN+FTF +    + +       G Q+H
Sbjct: 84  VVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLH 143

Query: 183 SLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           +L ++  +     +V  + LDMY K G +  AR +F+ +P R+VV+  A+++     G  
Sbjct: 144 ALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRP 203

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            E +E +  L+  G + N V+  +   A +G+  L  G+Q +  V +      V + NS+
Sbjct: 204 LETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSV 263

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +D Y KC  +  +R VFD M  R  +SW +M+V Y+++G   E   ++   R   + +P 
Sbjct: 264 VDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGE-EPT 322

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
                +VL+ C+     D G A+    V  +   +  I     +VDM G+ G + +A + 
Sbjct: 323 DFMVSSVLTTCAGLLGLDLGRAL--HAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQV 380

Query: 422 IKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
              MP        A++G        H  + + +      M +  E A NY+ L N+  + 
Sbjct: 381 FFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFD-----KMIMGQETAPNYITLVNVLTAC 435

Query: 479 GR 480
            R
Sbjct: 436 SR 437


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 344/580 (59%), Gaps = 12/580 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TL+NA     +LR G+ +HA  ++      + L   L+  Y +C    +AR +F+ +   
Sbjct: 328 TLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGI-PG 386

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG----AFGFELG 178
           N VSW  MI+  SQK     AL LF RM      P   T+  +L + A     A     G
Sbjct: 387 NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEG 446

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPER-DVVSCTAIISGY 235
           +++HS I+   + S   +G++++ MYA  G I EA   F+   + +R DVVS  AIIS  
Sbjct: 447 RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSL 506

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           +Q G  + A+  FR++ + G+  N +T  +VL A +G AAL  G  VH H+    + S V
Sbjct: 507 SQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNV 566

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            +  +L  MY +CGSL  +R +F+ ++ ER V+ +NAM+  YS++G+  E ++LF  M++
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQ 626

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E   +PD  ++++VLS CSHGG+ D G  +F  +     G  P  +HY C VD+LGRAG 
Sbjct: 627 EGS-RPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSY-GIAPSEDHYACAVDVLGRAGW 684

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + +A E I+ M  +PT  +  +LLGACR + +VD G      + E++P +   YV+LSN+
Sbjct: 685 LADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNI 744

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
            A AG+W++   VR  M+ + + K  G+SWIE+   +H F A DRSHP  EE+  ++++L
Sbjct: 745 LAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERL 804

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
             + +E GYVPD   VL  VDE +KE++L  HSE+LA+  G++ +     +RV+KNLR+C
Sbjct: 805 HAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKNLRVC 863

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCHN  KF+SK+  +++ +RD +RFHH V+G+CSCGDYW
Sbjct: 864 EDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 16/365 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL A  + R L  G+R+HA ++         L   L+  Y KCE L D  ++F  +  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             SWT +I+AY++   +  A+ +F RM +     +  TF  VL +CA       G+ IH+
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++S  E    + + LL +Y   G +  A  +FE + ERD+VS  A I+  AQ G  + 
Sbjct: 153 WIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDM 211

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ELF+++Q+EG+    +T   ++  LS  A +   + +HS V    +   +V+  +L  
Sbjct: 212 ALELFQRMQLEGVRPARIT---LVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALAS 268

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
            Y++ G L  ++ VFD  +ER V+SWNAML  Y++HG   E   LF  M  E  + P  V
Sbjct: 269 AYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG-IPPSKV 327

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           T +   +GCS        L     I  C  + G + +I     ++DM  R G   EA   
Sbjct: 328 TLVNASTGCS-------SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHL 380

Query: 422 IKNMP 426
            + +P
Sbjct: 381 FEGIP 385



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G++IH+ I+    E  +  G+ LL +Y K   + +   VF  L  RD  S T II+ Y +
Sbjct: 48  GRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  + AI +F ++Q EG+  + VT+ +VL A + L  L  G+ +H+ ++   +    VL
Sbjct: 106 HGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVL 165

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N L+ +Y  CG +  +  +F+ M ER ++SWNA +   ++ G     +ELF  M+ E  
Sbjct: 166 ANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEG- 223

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V+P  +T +  LS C+    + R     H IV  + G E  +     +     R G + +
Sbjct: 224 VRPARITLVITLSVCA----KIRQARAIHSIVR-ESGLEQTLVVSTALASAYARLGHLDQ 278

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           A E   +   E       ++LGA   H ++     +  R++
Sbjct: 279 AKEVF-DRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 343/576 (59%), Gaps = 7/576 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + L++C +   +  GQ+ H   IK      V +   L+  Y +   L++ +K+F  M ER
Sbjct: 209 SALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLER 268

Query: 123 NVVSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           + VSW  +I A +    S  EA+ +F+ M+R+   PN  TF  +L + +     +L  QI
Sbjct: 269 DQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQI 328

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGL 240
           H+LI+K N +    + ++LL  Y K+G +     +F  + ER D VS  ++ISGY    L
Sbjct: 329 HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNEL 388

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A++L   +   G   +  T+A+VL+A + +A L  G +VH+  +R  + S VV+ ++
Sbjct: 389 LCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSA 448

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMYSKCG + Y+ R F+ M  R + SWN+M+ GY++HG G   + LF  M+   ++ P
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQL-P 507

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T++ VLS CSH G+ D G   F  + +   G  P +EHY C+VD+LGRAG + +   
Sbjct: 508 DHITFVGVLSACSHIGLVDEGFEYFKSMTEVY-GLVPRVEHYSCMVDLLGRAGELDKIEN 566

Query: 421 FIKNMPFEPTAAILGSLLGAC--RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
           FI  MP +P   I  ++LGAC        ++G    + L  ++P+NA NYV+LSN+YAS 
Sbjct: 567 FINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASG 626

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G+WED+ R R  M+E AV K+ G SW+ +   +H F A D SHP +  + AK+K+L  K 
Sbjct: 627 GKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKI 686

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           ++AGYVP +   LYD++ E KE++L  HSEKLA+ F ++    G PIR++KNLR+C DCH
Sbjct: 687 RDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCH 745

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +  K++SKV  R + LRD NRFHH  +G CSC DYW
Sbjct: 746 SAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKC-ECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           H +++K  +   ++L   LI  Y +  +C+S ARK+FDEM +RN V+W  +IS Y+Q   
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVS-ARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKSNF-ESHIYVG 197
             +A  +   M+     PN F F + + +C  +  +   G+Q+H   I++   ++ + VG
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           + L++MYAK G I  AR VF  + ++D VS  ++I+G  Q    E+A++ +  ++  G++
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +     S L++ + L  +  G+Q H   ++  +   V + N+L+ +Y++   L   ++V
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 318 FDNMSERTVISWNAMLVGYSKHGMG-REVVELF-NLMREENKVKPDSVTYLAVLSGCS 373
           F  M ER  +SWN ++   +  G    E +E+F  +MR      P+ VT++ +L+  S
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRA--GWSPNRVTFINLLATVS 317



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 162/336 (48%), Gaps = 20/336 (5%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           S  +  +  +EM   G       +  LL    +  T +   ++HA ++K   +    +  
Sbjct: 286 SVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIEN 345

Query: 98  RLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
            L+  Y K   + +  ++F  M E R+ VSW +MIS Y       +A++L   M++    
Sbjct: 346 ALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQR 405

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            + FTFATVL++CA     E G ++H+  I++  ES + +GS+L+DMY+K GRI  A   
Sbjct: 406 LDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRF 465

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F  +P R++ S  ++ISGYA+ G  + A+ LF ++++ G + +++T+  VL+A S +  +
Sbjct: 466 FNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLV 525

Query: 277 GHG-------KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVIS 328
             G        +V+  V R E  S       ++D+  + G L       + M  +  ++ 
Sbjct: 526 DEGFEYFKSMTEVYGLVPRVEHYS------CMVDLLGRAGELDKIENFINKMPIKPNILI 579

Query: 329 WNAMLVGYS-----KHGMGREVVELFNLMREENKVK 359
           W  +L         K  +GR   E+   M  +N V 
Sbjct: 580 WRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVN 615



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 114/197 (57%), Gaps = 3/197 (1%)

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H  ++K  F+S +++ ++L+++Y + G    AR +F+ +P+R+ V+   +ISGY Q G+ 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALS-GLAALGHGKQVHSHVLRFEI-PSYVVLQN 299
           E+A  + +++  EG + N   + S + A    +     G+QVH + +R  +  + V + N
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            LI+MY+KCG + ++R VF  M ++  +SWN+M+ G  ++    + V+ +N MR+   + 
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG-LM 201

Query: 360 PDSVTYLAVLSGCSHGG 376
           P +   ++ LS C+  G
Sbjct: 202 PSNFALISALSSCASLG 218


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 359/612 (58%), Gaps = 41/612 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T +     + +L   +++HA ++         L   LI  Y  C  LS AR +FD+  
Sbjct: 55  HSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFP 114

Query: 121 E-RNVVSWTAMISAYSQKAHSFEALNLFIRMLR--SDTEPNEFTFATVLTSCAGAFGFE- 176
                + W  MI AYS+   S E+L LF +ML     T  +++TF  V T+C+       
Sbjct: 115 SLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRG 174

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            G+ +H +++K  +ES I+VG+SL++MY+   R+ +A+ VF+ +P+RDV++ T+++ GYA
Sbjct: 175 YGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYA 234

Query: 237 QLGLDEEAIELFRKLQVEG------MISNYVTY--------------------------A 264
             G    A ELF  +          M++ YV +                           
Sbjct: 235 MRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLV 294

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           S+L+A + L AL  GK +H ++ +  I     +  +LIDMY+KCG +  +RRVFD + +R
Sbjct: 295 SILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKR 354

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            +++W +M+ G S HG+G E +  F+ M  E   KPD +T L VL+GCSH G+ + GL++
Sbjct: 355 DLLTWTSMISGLSMHGLGAECLWTFSEMLAEG-FKPDDITLLGVLNGCSHSGLVEEGLSI 413

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           FH+++    G  P++EHYGC++D+LGRAGR+  A E IK+MP EP      +LL ACR+H
Sbjct: 414 FHDMIPLW-GIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIH 472

Query: 445 YNVDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
            +VD+GE +   + E+ P  + G YV+LSNLYAS G+WE VT+VR+ M ++     PG S
Sbjct: 473 GDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCS 532

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK-EAGYVPDMSCVLYDVDEEQKEKV 562
           WIE+D ++H F A+D+ HP   E++ K+ ++  +   E GYVP    VL+D++EE KE+ 
Sbjct: 533 WIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQA 592

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           +  HSEKLA+ FGL+ T EG  IR+ KNLR C DCH+  K +S V+ R++ +RD++RFH 
Sbjct: 593 VSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHT 651

Query: 623 IVEGTCSCGDYW 634
              G CSC DYW
Sbjct: 652 FRYGNCSCTDYW 663



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           ++++ +  L    +L   KQ+H+ V+   +     L   LI  Y  C +L+++R VFD  
Sbjct: 54  SHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQF 113

Query: 322 -SERTVISWNAMLVGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCS-HGGME 378
            S    I WN M+  YSK    +E + LF+ M    +    D  T+  V + CS H  + 
Sbjct: 114 PSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLR 173

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             G  V   +V  KDG+E +I     +V+M     R+ +A      MP
Sbjct: 174 GYGENVHGMVV--KDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 349/603 (57%), Gaps = 35/603 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C   +     +++HA ++K+       L   L+  Y KC  L DA  +FDEM +R+ 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++++AY+Q     + L++F  M  +D  +P+ F +AT+L +CA      LGKQ+H+
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             + S F     V SSL+DMYAK G    AR VF+ +  +  VS TA++SGYA+ GL +E
Sbjct: 129 RFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDE 188

Query: 244 AIELFRKLQVEGM--------------------------------ISNYVTYASVLTALS 271
           A+ELF +  V  +                                I + +  +SV+ A +
Sbjct: 189 AMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACA 248

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA LG GKQ+H  V+     S + + N+L+DMY+KC  +  +R VF+ M  R V+SW +
Sbjct: 249 NLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTS 308

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++VG ++HG  +E ++L++ M    ++KP+ VT++ ++  CSH G+  +G  +F  +++ 
Sbjct: 309 IIVGAAQHGRAKEALDLYDQMVLA-EIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIE- 366

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                P ++ + C +D+L R+G + EA + IK MP +P      +LL AC+ H N ++G 
Sbjct: 367 DYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGV 426

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            +  RL+ +       YV+LSN+YA AG+WE ++RVR+LM +  V + PG S I+L +  
Sbjct: 427 RIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKES 486

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
             FHA +  HPM++E+   +K+L  + ++ GY+PD S VL+D++E++KE+ L  HSE+ A
Sbjct: 487 QVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWA 546

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + +GL+    G  IR++KNLRIC DCH F K  S +  +++ +RD  R+HH  +G CSC 
Sbjct: 547 VAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCN 606

Query: 632 DYW 634
           D+W
Sbjct: 607 DFW 609



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 34/341 (9%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y TLL AC +  +LR G++VHA  + + +     +++ L+  Y KC   S AR +FD + 
Sbjct: 107 YATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSIL 166

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIR------------------------------- 149
            +  VSWTAM+S Y++     EA+ LF+R                               
Sbjct: 167 VKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIE 226

Query: 150 MLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M R   +  +    ++V+ +CA      LGKQIH L+I S +ES +++ ++L+DMYAK  
Sbjct: 227 MRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCS 286

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            I  AR VF  +  RDVVS T+II G AQ G  +EA++L+ ++ +  +  N VT+  ++ 
Sbjct: 287 DILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIY 346

Query: 269 ALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-V 326
           A S    +  G+++   ++  + I   + L    +D+ S+ G L  +  +   M  +   
Sbjct: 347 ACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDE 406

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            +W A+L     HG     V + + +   N  +P +   L+
Sbjct: 407 PTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLS 447



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 121/232 (52%), Gaps = 12/232 (5%)

Query: 47  IEMATLGLEMRFEEYD--------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           I+   + +EMR E  D        +++ AC N   L  G+++H  +I + Y   +++   
Sbjct: 218 IDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNA 277

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y KC  +  AR +F+ M  R+VVSWT++I   +Q   + EAL+L+ +M+ ++ +PN
Sbjct: 278 LVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPN 337

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           E TF  ++ +C+ A     G+++   +I+       + + +  LD+ +++G ++EA  + 
Sbjct: 338 EVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLI 397

Query: 218 ECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM--ISNYVTYASV 266
           + +P + D  +  A++S     G  E  + +  +L    M   S YV  ++V
Sbjct: 398 KTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNV 449


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 348/575 (60%), Gaps = 6/575 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L++C + +  + GQ++H   +K      V +   L+  Y +   L++ RK+F  M E + 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 125 VSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++I A ++   S  EA+  F+   R+  + N  TF++VL++ +     ELGKQIH 
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 541

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDE 242
           L +K+N        ++L+  Y K G +     +F  + ER D V+  ++ISGY    L  
Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLA 601

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A++L   +   G   +   YA+VL+A + +A L  G +VH+  +R  + S VV+ ++L+
Sbjct: 602 KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALV 661

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG L Y+ R F+ M  R   SWN+M+ GY++HG G E ++LF  M+ + +  PD 
Sbjct: 662 DMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDH 721

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ VLS CSH G+ + G   F  + D   G  P IEH+ C+ D+LGRAG + +  +FI
Sbjct: 722 VTFVGVLSACSHAGLLEEGFKHFESMSDSY-GLAPRIEHFSCMADVLGRAGELDKLEDFI 780

Query: 423 KNMPFEPTAAILGSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           + MP +P   I  ++LGAC R +    ++G+   + L ++EPENA NYV+L N+YA+ GR
Sbjct: 781 EKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGR 840

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WED+ + R+ MK+  V K+ G SW+ +   +H F A D+SHP  + +  K+K+L+ K ++
Sbjct: 841 WEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRD 900

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA-PIRVIKNLRICVDCHN 599
           AGYVP     LYD+++E KE++L  HSEKLA+ F L        PIR++KNLR+C DCH+
Sbjct: 901 AGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHS 960

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K++SK+ GR++ LRD NRFHH  +G CSC D+W
Sbjct: 961 AFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 203/394 (51%), Gaps = 12/394 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNA-----CVNQRTLRGGQRVHAHMIKTCYRP-PVY 94
           + TK  ++M ++ +++  E Y  LL++        +  L+ G+ VH H+I T      V 
Sbjct: 292 EATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVG 350

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           +   L+  Y KC  ++DAR++F  M +++ VSW +MI+   Q     EA+  +  M R D
Sbjct: 351 IGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHD 410

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P  FT  + L+SCA     +LG+QIH   +K   + ++ V ++L+ +YA+ G ++E R
Sbjct: 411 ILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECR 470

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLD-EEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
            +F  +PE D VS  +II   A+      EA+  F   Q  G   N +T++SVL+A+S L
Sbjct: 471 KIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSL 530

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAM 332
           +    GKQ+H   L+  I      +N+LI  Y KCG +    ++F  M+E R  ++WN+M
Sbjct: 531 SFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSM 590

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY  + +  + ++L   M +  + + DS  Y  VLS  +     +RG+ V       +
Sbjct: 591 ISGYIHNELLAKALDLVWFMLQTGQ-RLDSFMYATVLSAFASVATLERGMEV--HACSVR 647

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              E ++     +VDM  + GR+  AL F   MP
Sbjct: 648 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 681



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 11/314 (3%)

Query: 63  TLLNACVNQRTLRGGQRV-HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           + + +CV  R   G  R  H+ + K      VYL   LI  Y +      ARK+FDEM  
Sbjct: 8   SFVQSCVGHR---GAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGK 179
           RN VSW  ++S YS+     EAL     M++     N++ F +VL +C   G+ G   G+
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR 124

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           QIH L+ K ++     V + L+ MY K  G +  A   F  +  ++ VS  +IIS Y+Q 
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA--LGHGKQVHSHVLRFEIPSYVV 296
           G    A  +F  +Q +G      T+ S++T    L    +   +Q+   + +  + + + 
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLF 244

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + + L+  ++K GSL+Y+R+VF+ M  R  ++ N ++VG  +   G E  +LF  M    
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMI 304

Query: 357 KVKPDSVTYLAVLS 370
            V P+S  Y+ +LS
Sbjct: 305 DVSPES--YVILLS 316



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 19/317 (5%)

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           + + SC G  G    +  HS + K+  +  +Y+ ++L++ Y + G    AR VF+ +P R
Sbjct: 8   SFVQSCVGHRG--AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLR 65

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG--HGKQ 281
           + VS   I+SGY++ G  +EA+   R +  EG+ SN   + SVL A   + ++G   G+Q
Sbjct: 66  NCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQ 125

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKC-GSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           +H  + +       V+ N LI MY KC GS+ Y+   F ++  +  +SWN+++  YS+ G
Sbjct: 126 IHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAG 185

Query: 341 MGREVVELFNLMREENKVKPDSVTYLA-VLSGCSHGGMEDRGLAVFHEIVDC---KDGFE 396
             R    +F+ M+ +   +P   T+ + V + CS    + R L    E + C   K G  
Sbjct: 186 DQRSAFRIFSSMQYDGS-RPTEYTFGSLVTTACSLTEPDVRLL----EQIMCTIQKSGLL 240

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV--G 454
            ++     +V    ++G +  A +    M       + G ++G  R  +  +  +     
Sbjct: 241 TDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300

Query: 455 QRLMEIEPENAGNYVIL 471
             ++++ PE   +YVIL
Sbjct: 301 NSMIDVSPE---SYVIL 314



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T+L+A  +  TL  G  VHA  ++ C    V + + L+  Y+KC  L  A + F+ M 
Sbjct: 622 YATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 681

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELG- 178
            RN  SW +MIS Y++     EAL LF  M L   T P+  TF  VL++C+ A   E G 
Sbjct: 682 VRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGF 741

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV--------SCTA 230
           K   S+         I   S + D+  +AG + +     E +P +  V        +C  
Sbjct: 742 KHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCR 801

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                A+LG  ++A E+  +L+ E  + NYV   ++  A
Sbjct: 802 ANGRKAELG--KKAAEMLFQLEPENAV-NYVLLGNMYAA 837


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 338/573 (58%), Gaps = 38/573 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++LNA      LR G+++H  +I   +   V++   L   Y KC  +  AR +FD + ++
Sbjct: 160 SILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKK 219

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VSW  MIS Y++     + + L  +M  S   P++ T +T++ +              
Sbjct: 220 NLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-------------- 265

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                                Y + GR+ EAR VF    E+D+V  TA++ GYA+ G +E
Sbjct: 266 ---------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREE 304

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+ LF ++ +E +  +  T +SV+++ + LA+L HG+ VH   +   + + +++ ++LI
Sbjct: 305 DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG +  +R VF+ M  R V+SWNAM+VG +++G  ++ +ELF  M ++ K KPD+
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ-KFKPDN 423

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ +LS C H    ++G   F  I + + G  P ++HY C+V++LGR GR+ +A+  I
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSISN-QHGMTPTLDHYACMVNLLGRTGRIEQAVALI 482

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           KNM  +P   I  +LL  C    ++   E   + L E++P  A  Y++LSN+YAS GRW+
Sbjct: 483 KNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWK 542

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           DV  VR LMK K V K  G SWIE+D  +H F + DR+HP  E++  K+  L  K +E G
Sbjct: 543 DVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG-APIRVIKNLRICVDCHNFA 601
           + P+ + VL+DV E++K K +  HSEKLAL FGLI  P G +PIR+IKN+RIC DCH F 
Sbjct: 603 FTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFM 662

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF S++ GR++ LRD NRFHH   G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 209/447 (46%), Gaps = 71/447 (15%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  L+  CV    +   +R+ +HM    ++P   +L  +L+  Y K   L DA+ +FD
Sbjct: 23  EAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFD 82

Query: 118 EMRERNVVSWTAMISAYSQKAH------SF-------------------------EALNL 146
           +M +R+  SW A++SAY++         +F                         E+L L
Sbjct: 83  KMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLEL 142

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F RM R   EP E+T  ++L + A       GKQIH  II  NF  ++++ ++L DMYAK
Sbjct: 143 FKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAK 202

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G I +AR +F+CL ++++VS   +ISGYA+ G  E+ I L  ++++ G + + VT +++
Sbjct: 203 CGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTI 262

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           + A                                   Y +CG +  +RRVF    E+ +
Sbjct: 263 IAA-----------------------------------YCQCGRVDEARRVFSEFKEKDI 287

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           + W AM+VGY+K+G   + + LFN M  E+ ++PDS T  +V+S C+       G AV  
Sbjct: 288 VCWTAMMVGYAKNGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
           + +    G    +     ++DM  + G + +A      MP     +    ++G  +  ++
Sbjct: 347 KSI--LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHD 404

Query: 447 VDIGEFVGQRLME-IEPENAGNYVILS 472
            D  E     L +  +P+N     ILS
Sbjct: 405 KDALELFENMLQQKFKPDNVTFIGILS 431


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 318/524 (60%), Gaps = 3/524 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F ++ +     +  MI  Y    +   AL L+  ML    E + FT+  +  +CA 
Sbjct: 38  ACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACAS 97

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
               E G QIH  I K   E  ++V +SL++MY K G+I  +  VFE +  RDV S +AI
Sbjct: 98  LRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAI 157

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           I+ +A LG+  E + +F ++  EG          SVL+A + L AL  G+  H  +LR  
Sbjct: 158 IAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNI 217

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
               V++Q SLIDMY KCG +     +F  M ++  +S++ M+ G + HG G E +++F+
Sbjct: 218 REMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFS 277

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M EE  +KPD V YL VLS C+H G+ D GL  F+ +   + G EP I+HYGC+V ++G
Sbjct: 278 DMLEEG-LKPDDVVYLGVLSACNHAGLVDEGLQCFNRM-KLEHGIEPTIQHYGCIVHLMG 335

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           RAG + +ALE I++MP +P   +   LL AC+ H+N++IGE   + L E+   N G+YV+
Sbjct: 336 RAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVV 395

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSN+YA A RWEDV ++R  M  K  T+ PG S +++++ ++ F + D SHP  + +   
Sbjct: 396 LSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEM 455

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           + Q+  + K  GY PD S VL+DVDEE+K + L  HS+KLA+ F LI T +GAPIR+ +N
Sbjct: 456 IHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARN 515

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH + K +S +Y R++++RD+NRFHH  +GTCSC DYW
Sbjct: 516 LRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 7/249 (2%)

Query: 179 KQIHSLIIK--SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           KQ+H+ ++K  ++F +   V +  L  +   G +  A  +F  + +        +I GY 
Sbjct: 5   KQVHAQVLKWENSFCASNLVATCALSDW---GSMDYACSIFRQIDQPGTFEFNTMIRGYV 61

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
            +   E A+ L+ ++   G+ S+  TY ++  A + L ++  G Q+H ++ +  +   + 
Sbjct: 62  NVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLF 121

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +QNSLI+MY KCG +  S  VF++M  R V SW+A++  ++  GM  E + +F  M  E 
Sbjct: 122 VQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREG 181

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             +P+    ++VLS C+H G  D G      +   ++  E  +     ++DM  + G + 
Sbjct: 182 SCRPEESILVSVLSACTHLGALDLGRCT--HVTLLRNIREMNVIVQTSLIDMYVKCGCIE 239

Query: 417 EALEFIKNM 425
           + L   + M
Sbjct: 240 KGLSLFQRM 248



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC +   L  G+  H  +++      V ++T LI  Y KC C+     +F  M ++
Sbjct: 192 SVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKK 251

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           N +S++ MI+  +      EAL +F  ML    +P++  +  VL++C  A   + G Q  
Sbjct: 252 NQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCF 311

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + + ++   E  I     ++ +  +AG +++A      +P
Sbjct: 312 NRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMP 351


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/600 (37%), Positives = 351/600 (58%), Gaps = 40/600 (6%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRT---RLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           +L   + VHA +     +   Y+ T   RL+         S  R +F ++   N  +WTA
Sbjct: 20  SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTA 79

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-LIIKS 188
           +I AY+ +    +AL+ +  M +    P  FTF+ + ++CA      LG Q+H+  ++  
Sbjct: 80  LIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLG 139

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS--------------------- 227
            F S +YV ++++DMY K G +  AR VF+ +PERDV+S                     
Sbjct: 140 GFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLF 199

Query: 228 ----------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
                      TA+++GYAQ  +  +A+E+FR+L+ EG+  + VT   V++A + L A  
Sbjct: 200 DGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASK 259

Query: 278 HGKQVH--SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +   +   +    F +   V++ ++LIDMYSKCG++  +  VF  M ER V S+++M+VG
Sbjct: 260 YANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVG 319

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           ++ HG  R  ++LF  M E   VKP+ VT++ VL+ CSH G+ D+G  +F  +  C  G 
Sbjct: 320 FAIHGRARAAIKLFYDMLETG-VKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCY-GV 377

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P  E Y C+ D+L RAG + +AL+ ++ MP E   A+ G+LLGA  VH N D+ E   +
Sbjct: 378 APTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASK 437

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL-DQILHTF 514
           RL E+EP+N GNY++LSN YASAGRW+DV++VR+L++EK + K+PG SW+E  + ++H F
Sbjct: 438 RLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKF 497

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
            A D SHP   E+  ++  L  + K  GY P++S + Y +++ +K  +L+ HSEKLAL F
Sbjct: 498 VAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAF 557

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GL+ T  G+ I+++KNLRIC DCH      SKV GRK+ +RD  RFHH + G CSC ++W
Sbjct: 558 GLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 357/603 (59%), Gaps = 36/603 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + L +C    TL   + +HAH+I+      V+  + LI        L  A ++F +++  
Sbjct: 20  SFLESCT---TLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNP 76

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+  + + I  +S      ++ + +++  R+   P+  T+  ++ +C      ++G Q H
Sbjct: 77  NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136

Query: 183 SLIIKSNFESHIYVGSSLLDMYA-------------------------------KAGRIH 211
             II+  F+S +YV +SL+ MY+                               K+G + 
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVT 196

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR +F+ +PE+++V+ + +ISGYA+    ++AIEL+  LQ EG+ +N     SV+ + +
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCA 256

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL  G++ H ++LR ++   ++L  +L+DMY++CGS+  +  VFD +  R  +SW  
Sbjct: 257 HLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTT 316

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ G++ HG   + +E F+ M E+  + P  +T+ AVLS CSHGG+ +RGL +F E +  
Sbjct: 317 LIAGFAMHGYAEKALEYFSRM-EKAGLTPREITFTAVLSACSHGGLVERGLELF-ESMKR 374

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
               EP +EHYGC+VD+LGRAG++ EA +F+  MP +P A I G+LLGACR+H N +I E
Sbjct: 375 DYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAE 434

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
             G+ L+E++PE++G YV+LSN+YA   +WE+V  +R++MKE+ V K PG +  E+D  +
Sbjct: 435 RAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKV 494

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F   D++HP  +++    +++  K + AGY  +    L+D+DEE+KE  +  HSEKLA
Sbjct: 495 HKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLA 554

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + + ++ T    PIR++KNLR+C DCH   K +SKVY R++ +RD+NRFHH   G CSC 
Sbjct: 555 IAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCM 614

Query: 632 DYW 634
           DYW
Sbjct: 615 DYW 617



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 160/350 (45%), Gaps = 50/350 (14%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+ AC  + +L  G + H  +I+  +   VY++  L+  Y+    +  A  +F  + 
Sbjct: 116 YPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRIS 175

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRM------------------------------ 150
             +VVSWT+M++ Y +      A  LF +M                              
Sbjct: 176 CLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFL 235

Query: 151 LRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           L+S+    NE    +V+ SCA     ELG++ H  I+++    ++ +G++L+DMYA+ G 
Sbjct: 236 LQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGS 295

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I +A  VF+ LP RD +S T +I+G+A  G  E+A+E F +++  G+    +T+ +VL+A
Sbjct: 296 IDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSA 355

Query: 270 LSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVI 327
            S    +  G ++   + R + I   +     ++D+  + G L  + +  + M  +    
Sbjct: 356 CSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAP 415

Query: 328 SWNAMLVGYSKHG-------MGREVVELFNLMREENKVKPDSVTYLAVLS 370
            W A+L     H         G+ ++EL          KP+   Y  +LS
Sbjct: 416 IWGALLGACRIHKNSEIAERAGKTLIEL----------KPEHSGYYVLLS 455



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L+ L     L H K +H+H++R      V   + LI +      L Y+ +VF  +    +
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
             +N+ + G+S      +    F +  + N + PD++TY  ++  C+  G  D G+    
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFH-FYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHG 137

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +I+  + GF+ ++     +V M    G +  A
Sbjct: 138 QII--RHGFDSDVYVQNSLVTMYSTLGDIKSA 167


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 351/575 (61%), Gaps = 8/575 (1%)

Query: 65   LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
            L++C     L  GQ++H   +K        +   L+  Y +C  +S+  ++F+ M   +V
Sbjct: 491  LSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV 550

Query: 125  VSWTAMISAY-SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW +++    S +A   E++ +F  M++S   PN+ TF   L +       ELGKQIHS
Sbjct: 551  VSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHS 610

Query: 184  LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDE 242
            +++K        V ++L+  YAK+G +     +F  +   RD +S  ++ISGY   G  +
Sbjct: 611  VMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQ 670

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            EA++    +     + ++ T++ VL A + +AAL  G ++H+  LR  + S VV++++L+
Sbjct: 671  EAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALV 730

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMYSKCG + Y+ +VF +MS++   SWN+M+ GY++HG+GR+ +E+F  M+E  +  PD 
Sbjct: 731  DMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGE-SPDH 789

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            VT+++VLS CSH G+ +RGL  F  + D   G  P IEHY CV+D+LGRAG + +  E++
Sbjct: 790  VTFVSVLSACSHAGLVERGLDYFELMEDY--GILPRIEHYSCVIDLLGRAGELDKIQEYM 847

Query: 423  KNMPFEPTAAILGSLLGAC---RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            K MP +P   I  ++L AC   +    +D+G    + L+E+EP+N  NYV+ S  +A+ G
Sbjct: 848  KRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIG 907

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            RWED  + R  MK  AV K+ GRSW+ L   +HTF A DRSHP  +E+  K+  L  K +
Sbjct: 908  RWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIR 967

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             AGYVP    VL+D++EE KE++L  HSEKLA+ F L  +  G PIR++KNLR+C DCH 
Sbjct: 968  NAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHT 1027

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              +++S++ GR++ LRD  RFHH  +G CSCGDYW
Sbjct: 1028 AFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 158/323 (48%), Gaps = 15/323 (4%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           + +H  ++K      ++L   L+  Y K   L  AR++FD M  RN VSWT +IS +   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 138 AHSFEALNLFIRMLRS--DTEPNEFTFATVLTSCAGAFGFELG--KQIHSLIIKSNFESH 193
               +A  LF  MLR      P  FTF +VL +C  +    LG   Q+H L+ K+ F S+
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 194 IYVGSSLLDMYA--KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
             V ++L+ MY     G    A+ VF+  P RD+++  A++S YA+ G       LFR +
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 252 QVEG----MISNYVTYASVLTA--LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           Q +     +     T+ S++TA  LS   +LG   Q+   VL+    S + + ++L+  +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSS-CSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           ++ G L  ++ ++  + ER  ++ N ++ G  K   G    E+F   R+   V  D  TY
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD--TY 381

Query: 366 LAVLSGCSHGGMEDRGLAVFHEI 388
           + +LS  +     ++GL    E+
Sbjct: 382 VVLLSAIAEFSTAEQGLRKGREV 404



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 170/335 (50%), Gaps = 25/335 (7%)

Query: 53  GLEMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           G+E+R  E+        T L++C    +L    ++   ++K+     +Y+ + L+  + +
Sbjct: 270 GIELRPTEHTFGSLITATYLSSC----SLGLLDQLFVRVLKSGCSSDLYVGSALVSAFAR 325

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              L +A+ ++  ++ERN V+   +I+   ++ H   A  +F+   R     N  T+  +
Sbjct: 326 HGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGA-RDSAAVNVDTYVVL 384

Query: 166 LTSCA----GAFGFELGKQIHSLIIKSNFESHIY----VGSSLLDMYAKAGRIHEARGVF 217
           L++ A       G   G+++H+ ++++    HIY    V + L++MYAK G I +A  VF
Sbjct: 385 LSAIAEFSTAEQGLRKGREVHAHVLRAG---HIYRKIAVSNGLVNMYAKCGAIDKACRVF 441

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +  RD +S   II+   Q G  E A+  +  ++   +  +     S L++ +GL  L 
Sbjct: 442 QLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLA 501

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML-VGY 336
            G+Q+H   +++ +     + N+L+ MY +CG ++    +F++MS   V+SWN+++ V  
Sbjct: 502 AGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMA 561

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           S      E V++F+ M +   V P+ VT++  L+ 
Sbjct: 562 SSQAPITESVQVFSNMMKSGLV-PNKVTFVNFLAA 595



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 23/308 (7%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + +H  ++K      +++ + L++ YAK  R+  AR VF+ +P R+ VS T +ISG+   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 239 GLDEEAIELFRKLQVE--GMISNYVTYASVLTAL--SGLAALGHGKQVHSHVLRFEIPSY 294
           GL E+A  LFR +  E  G      T+ SVL A   SG   LG   QVH  V + E  S 
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 295 VVLQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             + N+LI MY  C  G    ++RVFD    R +I+WNA++  Y+K G       LF  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 353 REEN---KVKPDSVTYLAV-----LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
           + ++   +++P   T+ ++     LS CS G ++   + V       K G   ++     
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVL------KSGCSSDLYVGSA 318

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE-FVGQRLMEIEPE 463
           +V    R G + EA +    +       + G + G  +  +     E F+G R  +    
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR--DSAAV 376

Query: 464 NAGNYVIL 471
           N   YV+L
Sbjct: 377 NVDTYVVL 384



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 17/236 (7%)

Query: 39  NGQLTKALIEMATLGLEMRFEE------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           NG L +A   M  + L M  E+      +  +LNAC +   L  G  +HA  +++     
Sbjct: 666 NGHLQEA---MDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESD 722

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V + + L+  Y+KC  +  A K+F  M ++N  SW +MIS Y++     +AL +F  M  
Sbjct: 723 VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQE 782

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           S   P+  TF +VL++C+ A   E G     L+        I   S ++D+  +AG + +
Sbjct: 783 SGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDK 842

Query: 213 ARGVFECLPE-------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
            +   + +P        R V+         A++ L  EA  +  +L+ +  + NYV
Sbjct: 843 IQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPV-NYV 897


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 351/582 (60%), Gaps = 7/582 (1%)

Query: 58  FEEYDTLLNACVNQ----RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           F   D+L++A +       ++   + +H  +IK+      ++  +L+  Y +  C  DA 
Sbjct: 34  FSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDAL 93

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGA 172
           ++FDE+ ++++VSW ++IS +S++A     L L  RM      +PNE T   V+++CAG 
Sbjct: 94  ELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGV 153

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              ++GK IH + +KS     + V +SL+++Y K G +  A  +FE +  + +VS  +++
Sbjct: 154 GELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMV 213

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + +  +GL E+ I  F  ++  G+ S+  T  S+L A   L      + VH ++L   + 
Sbjct: 214 AVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLD 273

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             + +  +L+D+Y+K G+L+ S +VF  M     ++W AML  Y+ HG GRE +E F LM
Sbjct: 274 GNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELM 333

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
             E  V PD VT+  +LS CSH G+ + G   F  + +   G E  +EHY C+VD+LGR+
Sbjct: 334 VREGVV-PDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFY-GVELRVEHYSCMVDLLGRS 391

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           G + +A + IK+MP EP + + G+L+GACRV  N+++G+ V +RL  ++P ++ NY+ LS
Sbjct: 392 GHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLS 451

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y++AG+W D ++VR LMKE+ + ++PG S+IE    +H F   D+SHP  E++  K++
Sbjct: 452 NMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLE 511

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +L  K +E G+      VL+DVDEE KE ++  HSEKLA+ FGL+ T  G P+ + KN+R
Sbjct: 512 ELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIR 571

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IC DCH FAK +S +  R + +RD  RFHH   G CSCGDYW
Sbjct: 572 ICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 362/611 (59%), Gaps = 13/611 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM-IKTCYRP 91
           ++TLC++G+L +A   +  L    +   Y ++L A            VH  +     +R 
Sbjct: 54  VQTLCASGRLARAAALLQGLPAPTQ-RTYKSVLLAAARAGDAALAAAVHRRLKADPVFRS 112

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
             +L TRLI  Y     L  AR++FDE   +++  W A++ A +   H  EAL     M 
Sbjct: 113 DPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMG 172

Query: 152 RSDTEPNEFTFATVLTSCAGAF-----GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           R     + +++A  L +C  A         L ++IH+  ++  +  H +V ++L+D YAK
Sbjct: 173 RLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAK 232

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV--EGMISNYVTYA 264
            G +  A  VF  +PER+VVS TA+I  YA+     +AI LF+++    E ++ N VT  
Sbjct: 233 LGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIV 292

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
            +L A +G+ ALG GK +H+++LR    S V + N+L+ MY KCG L   R +FD +  R
Sbjct: 293 CILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHR 352

Query: 325 T-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
             V+SWN ++ GY  HG G E V++F  M +   V P+ +T+++VL  CSH G+ D G  
Sbjct: 353 KDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMG-VSPNIITFISVLGACSHAGLVDEGKR 411

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           +F  +VD      P  EHY C+VD+LGRAG + EA+E I+ M   P+  + GSLLGACR+
Sbjct: 412 LFESMVDYN--VTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRI 469

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H +V+  E    +L ++EP NAGNYV+L+++YA A    +V  +++L++E A+ K PG S
Sbjct: 470 HRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGCS 529

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           WIE+ + LH F + D  +P  EEL A + +   + K  GYVPD   VLYD++EE+KEK+L
Sbjct: 530 WIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKIL 589

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
           LGHSEKLA+ FGLI T  G  IR+ KNLR+C DCH+  KF+SK   R++ +RD NRFHH 
Sbjct: 590 LGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRFHHF 649

Query: 624 VEGTCSCGDYW 634
            +G CSCGDYW
Sbjct: 650 RDGICSCGDYW 660


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 332/569 (58%), Gaps = 2/569 (0%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV 125
           AC   R    G ++HA  ++  Y P   ++    +  Y K  CL  AR++F+EM  RNV+
Sbjct: 122 ACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVI 181

Query: 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           +W A+++         E    +  +  +   PN  +      +CAGA    LG+Q H  +
Sbjct: 182 AWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFV 241

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           +   F+  + V ++++D Y K     +AR VF+ +  R+ VS  ++I  YAQ G +E+A+
Sbjct: 242 VTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDAL 301

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
            ++   +  G        +SVLT  +GL  L  G+ +H+  +R  I + + + ++L+DMY
Sbjct: 302 AVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMY 361

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            KCG +  + +VF +M ER +++WNAM+ GY+  G  +  + +F+ M       P+ +T 
Sbjct: 362 GKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITL 421

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           + V++ CS GG+   G  +F  + + + G EP  EHY CVVD+LGRAG    A E I+ M
Sbjct: 422 VNVITACSRGGLTKDGYELFDTMRE-RFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRM 480

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           P  P+ ++ G+LLGAC++H   ++G    ++L E++P+++GN+V+LSN+ ASAGRW + T
Sbjct: 481 PMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEAT 540

Query: 486 RVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
            VR+ MK   + K+PG SWI    ++H F+A D  H    E+ A + +L  + + +GY+P
Sbjct: 541 DVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMP 600

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           D    LYDV+EE+KE  +  HSEKLAL FGLI  P   PIR+ KNLRICVDCH   KFVS
Sbjct: 601 DTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVS 660

Query: 606 KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            + GR++ +RD NRFH+  +  CSC DYW
Sbjct: 661 GIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
              NAC     L  G++ H  ++   +   V +   ++ FY KC C   AR +FD MR R
Sbjct: 220 AFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVR 279

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N VSW +MI AY+Q     +AL +++    +  EP +F  ++VLT+CAG  G   G+ +H
Sbjct: 280 NSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALH 339

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           ++ ++S  +++I+V S+L+DMY K G + +A  VF  +PER++V+  A+I GYA +G  +
Sbjct: 340 AVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQ 399

Query: 243 EAIELFRKLQVEGMIS-NYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            A+ +F  +   G  S N++T  +V+TA S  GL   G+ +   +   RF +        
Sbjct: 400 NALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGY-ELFDTMRERFGVEPRTEHYA 458

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHG---MGREVVE-LFNL 351
            ++D+  + G    +  +   M  R  IS W A+L     HG   +GR   E LF L
Sbjct: 459 CVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFEL 515



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 9/367 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
             A ++ R+ R G+  HA  ++    P  P ++   L+  Y+K +  + A          
Sbjct: 16  FEAAISSRSPRLGRAAHARALRL-LSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNP 74

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL--TSCAGAFGFELGKQ 180
            VVS+TA IS  +Q A    AL+ F  MLR    PN+FTF +     +CA      +G Q
Sbjct: 75  TVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQ 134

Query: 181 IHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           IH+L ++  +     +V  + +DMY K G +  AR +FE +P R+V++  A+++     G
Sbjct: 135 IHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDG 194

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              E  + +  L+  G + N V+  +   A +G   L  G+Q H  V+       V + N
Sbjct: 195 RPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSN 254

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +++D Y KC     +R VFD M  R  +SW +M+V Y++HG   + + ++   R   + +
Sbjct: 255 AMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGE-E 313

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P      +VL+ C+  G+           V  +   +  I     +VDM G+ G V +A 
Sbjct: 314 PTDFMVSSVLTTCA--GLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAE 371

Query: 420 EFIKNMP 426
           +   +MP
Sbjct: 372 QVFLDMP 378


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 356/597 (59%), Gaps = 2/597 (0%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           S+G+  ++L  +  +   M        ++A  N R+   G++ H + +K  +    Y+  
Sbjct: 88  SSGRHKESLQLLRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFN 147

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            ++  Y +C  + DA K+F+ +   +  ++ +MI+ Y  +     +L +   M     + 
Sbjct: 148 AVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKW 207

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           +  ++  VL  CA      LG Q+H+  +K   E ++YVGS+L+DMY K   +H+A   F
Sbjct: 208 DYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAF 267

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           E LPE++VVS TA+++ Y Q  L E+A++LF  +++EG+  N  TYA  L + +GLAAL 
Sbjct: 268 EVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALR 327

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G  + + V++     ++++ N+L++MYSK GS+  + RVF +M  R V+SWN ++ GY+
Sbjct: 328 TGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYA 387

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG+ RE +E F+ M     V P  VT++ VLS C+  G+ D      + ++  + G  P
Sbjct: 388 HHGLAREGMEAFHSMLSA-AVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMK-EVGITP 445

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
             EHY C+V +L R GR+ EA  FI N           SLL +C+V+ N  +G  V +++
Sbjct: 446 GKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQI 505

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           +++EP + G YV+LSN+YA A RW+ V +VR+ M+E+AV K PG SWI +   +H F + 
Sbjct: 506 LQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSE 565

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           ++ HP  ++++ K+++L  + K  GYVP+ + VL+D+D+E+KE+ L+ HSEKLAL FGLI
Sbjct: 566 EKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLI 625

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            TP+GA I ++KNLRIC DCH   K +S V  RK+ +RD  RFH I  G CSC DYW
Sbjct: 626 HTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 180/354 (50%), Gaps = 7/354 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+ +HA +I T     V L   LI FY KC  +  AR +FD M  RN VS   ++S 
Sbjct: 27  LSKGKALHARLI-TAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSG 85

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+      E+L L +R++  D   NE+  +  +++ A    +++G+Q H   +K+ F   
Sbjct: 86  YASSGRHKESLQL-LRVV--DFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQ 142

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            YV +++L MY +   + +A  VFE +   D  +  ++I+GY   G  + ++ + R +  
Sbjct: 143 RYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTG 202

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           E    +YV+Y +VL   + +     G QVH+  L+  +   V + ++L+DMY KC  +  
Sbjct: 203 EAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHD 262

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + R F+ + E+ V+SW A++  Y+++ +  + ++LF  M  E  V+P+  TY   L+ C+
Sbjct: 263 ANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEG-VQPNEFTYAVALNSCA 321

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
                  G A+   ++  K G    +     +++M  ++G + +A     +MP 
Sbjct: 322 GLAALRTGNALGACVM--KTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPL 373


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 353/577 (61%), Gaps = 15/577 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L +C      + G+  H  ++K  +   + L+T L+ FY K   L  A+++F  M 
Sbjct: 13  FSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMP 72

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VV+  AMISA S+  +  EA NLF  M    TE N  ++ +++T C    G      
Sbjct: 73  RRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMIT-CYCKLG-----D 122

Query: 181 IHS--LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL-PERDVVSCTAIISGYAQ 237
           I+S  L+   N    +   ++++D Y K+ ++  A+ +F  +   R+ V+   +IS Y Q
Sbjct: 123 INSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQ 182

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G    AI +F+++Q E +    VT  S+L+A + L AL  G+ +H ++    +   VVL
Sbjct: 183 CGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVL 242

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+LIDMY KCG+L  +  VF  +S + +  WN+++VG   +G G E +  F +M +E  
Sbjct: 243 GNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEG- 301

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           +KPD VT++ +LSGCSH G+   G   F E++    G EP +EHYGC+VD+LGRAG + E
Sbjct: 302 IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVY-GLEPGVEHYGCMVDLLGRAGYLKE 360

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           ALE I+ MP +P + +LGSLL AC++H +  +GE V Q+L+E++P + GNYV LSNLYAS
Sbjct: 361 ALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYAS 420

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
             RW+DV   R+LM ++ V K PG S IE++ I+H F A D SHP   +++A + +++ +
Sbjct: 421 LSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKE 480

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K  G+VP+ + VL+D++EE+KE  +  HSE++A+ FGL+ TP G  IRV+KNLR C DC
Sbjct: 481 LKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDC 540

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K +S  + R++ +RD+ RFHH   G+CSC DYW
Sbjct: 541 HSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 14/235 (5%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR+D  P++ +F+ +L SCA +   +LG+  H  I+K  FE  + + + LLD YAK G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A+ VF  +P RDVV+  A+IS  ++ G  EEA  LF  +       N  ++ S++T 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITC 116

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTV 326
              L        ++S  L F+      VV  N++ID Y K   L  ++ +F  M S R  
Sbjct: 117 YCKLG------DINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           ++WN M+  Y + G     + +F  M+ EN VKP  VT +++LS C+H G  D G
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSEN-VKPTEVTMVSLLSACAHLGALDMG 224


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 352/559 (62%), Gaps = 6/559 (1%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           ++H   ++  +   +++ + L   Y+KC  LS+A ++FD+M +++ V+WTAMI  Y++  
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 202

Query: 139 HSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            S EA  L  R ++ +     ++  F +VL++  G     L K IH  + K+ FE  + V
Sbjct: 203 -SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 261

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
            ++L+DMYAK+  +  A  V +  P   +VVS T++I GY +    EEA+ ++ +L+ +G
Sbjct: 262 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 321

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N  T++S++   +  A L  G Q+H+ V++ ++     + ++L+DMY KCG ++ S 
Sbjct: 322 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 381

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++F+ +  RT I+WNA++  +++HG GRE ++ F+ M     ++P+ + ++++L+ CSH 
Sbjct: 382 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSG-IRPNHIAFVSLLTACSHA 440

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D GL  F+ + +   G EP+ EHY C++D  GRAGR+ EA +FI  MP +P A    
Sbjct: 441 GLVDEGLKYFYSMKEAH-GIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWC 499

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGACR+  + ++GE   Q LM++EP N G +V LS +YAS G+WEDV  VR+LM++  
Sbjct: 500 SLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSR 559

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG SW++ ++  H F + D SHP ++++  K+++L+ + KE GY+PD S +  +++
Sbjct: 560 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLE 619

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +  KE++L  HSE++A+ F LI  P   PI V KNLRIC+DCH   KF+ KV  R + +R
Sbjct: 620 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 679

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH V G CSCGDYW
Sbjct: 680 DNSRFHHFVNGRCSCGDYW 698



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 193/376 (51%), Gaps = 12/376 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +LL +C     LR G+ +HA ++ +       +L   LI  Y+ C  L+ A ++F  M  
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 84

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RN VSWT ++S  SQ     +AL  F  M R+   P  F  ++   + A       G Q+
Sbjct: 85  RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQL 144

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H + ++  F++ ++V S+L DMY+K G + EA  VF+ +P++D V+ TA+I GYA+ G  
Sbjct: 145 HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 204

Query: 242 EEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           E A+  FR ++ EG++ ++   + SVL+A  GL      K +H  V +      V ++N+
Sbjct: 205 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 264

Query: 301 LIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           LIDMY+K   +  + RV   +     V+S  +M+ GY +     E + ++  +R +  V+
Sbjct: 265 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG-VE 323

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KDGFEPEIEHYGCVVDMLGRAGRVG 416
           P+  T+ +++ GC+   + ++G  +  +++     +D F         +VDM G+ G + 
Sbjct: 324 PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-----LVDMYGKCGLIS 378

Query: 417 EALEFIKNMPFEPTAA 432
            +++    + +    A
Sbjct: 379 LSMQLFNEIEYRTDIA 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 1/176 (0%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +E+   G+E     + +++  C  Q  L  G ++HA +IKT      ++ + L+  Y KC
Sbjct: 315 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKC 374

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S + ++F+E+  R  ++W A+I+ ++Q  H  EA+  F RM+ S   PN   F ++L
Sbjct: 375 GLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 434

Query: 167 TSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           T+C+ A   + G K  +S+      E      S ++D Y +AGR+ EA      +P
Sbjct: 435 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 490


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 327/529 (61%), Gaps = 15/529 (2%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           LS+AR++FDEM +RNVV+WT+MIS Y+       A  LF  M     + NE T+  +L  
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM----PDKNEVTWTAMLK- 241

Query: 169 CAGAFGFELGKQIHSL--IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
                G+    +I+    + K+     +   + ++  +   G + +AR VF+ + E+D  
Sbjct: 242 -----GYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDG 296

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           + +A+I  Y + G + EA+ LF  +Q EG+  N+ +  S+L+    LA+L HG+QVHS +
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQL 356

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           +R      + + + LI MY KCG L   +RVFD  S + ++ WN+++ GY++HG G + +
Sbjct: 357 VRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKAL 416

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           E+F+ M       PD +T++ VLS C + G    GL +F E +  K   + + EHY C+V
Sbjct: 417 EVFHEMFSSGAA-PDEITFIGVLSACGYTGKVKEGLEIF-ESMKSKYQVDQKTEHYACMV 474

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAG++ EA+  I+NMP E  A + G+LL ACR H N+D+ E   ++L+++EP +AG
Sbjct: 475 DLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAG 534

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH-ASDRSHPMRE 525
            Y++LSNLYAS  RW+DV  +R+ M+ + V+K PG SWIE+D  +H F      SHP  E
Sbjct: 535 PYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHE 594

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
            +  K+++L    +EAGY PD S V++DVDEE K   L  HSEK+A+ +GL+  P G PI
Sbjct: 595 MIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPI 654

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           RV+KNLR+C DCH+  K +++V GR++ LRD NRFHH  +G CSC D+W
Sbjct: 655 RVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 146/295 (49%), Gaps = 2/295 (0%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +++A    E+  ++ +    A +   T  G     A + K     PV     +I+ +   
Sbjct: 218 VDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLN 277

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +  AR +FD+M+E++  +W+A+I  Y +K    EAL LF  M R    PN  +  ++L
Sbjct: 278 GEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISIL 337

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           + C      + G+Q+HS +++S+F+  IYV S L+ MY K G +   + VF+    +D+V
Sbjct: 338 SVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIV 397

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSH 285
              +II+GYAQ G  E+A+E+F ++   G   + +T+  VL+A      +  G ++  S 
Sbjct: 398 MWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESM 457

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
             ++++         ++D+  + G L  +  + +NM  E   I W A+L     H
Sbjct: 458 KSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 19/292 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y K   +S+ARK+FD+M ERNVVSWT+M+  Y Q+    EA  LF RM     E N
Sbjct: 84  LVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM----PEKN 139

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L         +  +++  +I   +    +   ++++      GR+ EAR +F+
Sbjct: 140 VVSWTVMLGGLIEDGRVDEARRLFDMIPVKD----VVASTNMIGGLCSEGRLSEAREIFD 195

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+R+VV+ T++ISGYA        +++ RKL       N VT+ ++L   +    +  
Sbjct: 196 EMPQRNVVAWTSMISGYAM----NNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINE 251

Query: 279 GKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
             ++        +P   V   N +I  +   G +  +R VFD M E+   +W+A++  Y 
Sbjct: 252 AAELFK-----AMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYE 306

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           + G   E + LF+LM+ E  V+P+  + +++LS C      D G  V  ++V
Sbjct: 307 RKGFELEALALFSLMQREG-VRPNFPSIISILSVCGSLASLDHGRQVHSQLV 357



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 147/341 (43%), Gaps = 91/341 (26%)

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           I ++ +   +  AR +FD+++ + V SW A+++ Y       EA  LF +M     E N 
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM----PERNT 78

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            ++                                   + L+  Y K G I EAR VF+ 
Sbjct: 79  ISW-----------------------------------NGLVSGYVKNGMISEARKVFDK 103

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +PER+VVS T+++ GY Q GL +EA  LF ++  +    N V++  +L  L     +  G
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEK----NVVSWTVMLGGL-----IEDG 154

Query: 280 KQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           +   +  L   IP   VV   ++I      G L+ +R +FD M +R V++W +M+ GY+ 
Sbjct: 155 RVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAM 214

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +       +LF +M ++N+     VT+ A+L G +                         
Sbjct: 215 NNKVDVARKLFEVMPDKNE-----VTWTAMLKGYT------------------------- 244

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
                       R+GR+ EA E  K MP +P AA  G ++G
Sbjct: 245 ------------RSGRINEAAELFKAMPVKPVAACNGMIMG 273



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 128/312 (41%), Gaps = 56/312 (17%)

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +S F S   +    +  +A+ G+I  AR +F+ L  + V S  AI++GY       EA +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           LF K+     IS                                        N L+  Y 
Sbjct: 69  LFDKMPERNTIS---------------------------------------WNGLVSGYV 89

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           K G ++ +R+VFD M ER V+SW +M+ GY + G+  E   LF  M E+N      V++ 
Sbjct: 90  KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKN-----VVSWT 144

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            +L G    G  D    +F +++  KD     +     ++  L   GR+ EA E    MP
Sbjct: 145 VMLGGLIEDGRVDEARRLF-DMIPVKD-----VVASTNMIGGLCSEGRLSEAREIFDEMP 198

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVT 485
                A   S++    ++  VD    V ++L E+ P+ N   +  +   Y  +GR  +  
Sbjct: 199 QRNVVA-WTSMISGYAMNNKVD----VARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAA 253

Query: 486 RVRELMKEKAVT 497
            + + M  K V 
Sbjct: 254 ELFKAMPVKPVA 265


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 346/545 (63%), Gaps = 6/545 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           +++ + L   Y+KC  LS+A ++FD+M +++ V+WTAMI  Y++   S EA  L  R ++
Sbjct: 306 LFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG-SLEAAVLSFRDMK 364

Query: 153 SD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            +     ++  F +VL++  G     L K IH  + K+ FE  + V ++L+DMYAK+  +
Sbjct: 365 REGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 424

Query: 211 HEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             A  V +  P   +VVS T++I GY +    EEA+ ++ +L+ +G+  N  T++S++  
Sbjct: 425 ESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 484

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            +  A L  G Q+H+ V++ ++     + ++L+DMY KCG ++ S ++F+ +  RT I+W
Sbjct: 485 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAW 544

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           NA++  +++HG GRE ++ F+ M     ++P+ + ++++L+ CSH G+ D GL  F+ + 
Sbjct: 545 NAVINVFAQHGHGREAIQAFDRMIYSG-IRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 603

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           +   G EP+ EHY C++D  GRAGR+ EA +FI  MP +P A    SLLGACR+  + ++
Sbjct: 604 EAH-GIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKEL 662

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           GE   Q LM++EP N G +V LS +YAS G+WEDV  VR+LM++  + K PG SW++ ++
Sbjct: 663 GEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNK 722

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
             H F + D SHP ++++  K+++L+ + KE GY+PD S +  ++++  KE++L  HSE+
Sbjct: 723 KTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSER 782

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           +A+ F LI  P   PI V KNLRIC+DCH   KF+ KV  R + +RD +RFHH V G CS
Sbjct: 783 IAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCS 842

Query: 630 CGDYW 634
           CGDYW
Sbjct: 843 CGDYW 847



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 188/376 (50%), Gaps = 13/376 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +LL +C     LR G+ +HA ++ +       +L   LI  Y+ C  L+ A ++F  M  
Sbjct: 175 SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 234

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RN VSWT ++S  SQ     +AL  F  M R+   P  F  ++   + A        +  
Sbjct: 235 RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSC 294

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
            +      F++ ++V S+L DMY+K G + EA  VF+ +P++D V+ TA+I GYA+ G  
Sbjct: 295 -TASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 353

Query: 242 EEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           E A+  FR ++ EG++ ++   + SVL+A  GL      K +H  V +      V ++N+
Sbjct: 354 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 413

Query: 301 LIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           LIDMY+K   +  + RV   +     V+S  +M+ GY +     E + ++  +R +  V+
Sbjct: 414 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG-VE 472

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KDGFEPEIEHYGCVVDMLGRAGRVG 416
           P+  T+ +++ GC+   + ++G  +  +++     +D F         +VDM G+ G + 
Sbjct: 473 PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-----LVDMYGKCGLIS 527

Query: 417 EALEFIKNMPFEPTAA 432
            +++    + +    A
Sbjct: 528 LSMQLFNEIEYRTDIA 543



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 182/415 (43%), Gaps = 55/415 (13%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +LL +C     LR G+ +HA ++ +       +L   LI  Y+ C  L+ A ++F  M  
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 84

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF------------------- 162
           RN VSWT ++S  SQ     +AL  F  M R+   P    +                   
Sbjct: 85  RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHC 144

Query: 163 -----------------------------ATVLTSCAGAFGFELGKQIHS-LIIKSNFES 192
                                        A++L SC  A     G+ +H+ L++     +
Sbjct: 145 HSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAA 204

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
             ++ + L+ MY+    +  A  +F  +P R+ VS T ++SG +Q  +  +A+  F  ++
Sbjct: 205 STFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMR 264

Query: 253 VEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             G+  + +   ++   A +  A L       S  + F+   +V   ++L DMYSKCG L
Sbjct: 265 RAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVA--SNLADMYSKCGLL 322

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           + + RVFD M ++  ++W AM+ GY+K+G     V  F  M+ E  V  D   + +VLS 
Sbjct: 323 SEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS- 381

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            + GG++D  L+        K GFE E+     ++DM  ++  V  A   +K  P
Sbjct: 382 -ASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDP 435



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 1/176 (0%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +E+   G+E     + +++  C  Q  L  G ++HA +IKT      ++ + L+  Y KC
Sbjct: 464 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKC 523

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S + ++F+E+  R  ++W A+I+ ++Q  H  EA+  F RM+ S   PN   F ++L
Sbjct: 524 GLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 583

Query: 167 TSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           T+C+ A   + G K  +S+      E      S ++D Y +AGR+ EA      +P
Sbjct: 584 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 639



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 120/321 (37%), Gaps = 54/321 (16%)

Query: 162 FATVLTSCAGAFGFELGKQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
            A++L SC  A     G+ +H+ L++     +  ++ + L+ MY+    +  A  +F  +
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY----------------- 263
           P R+ VS T ++SG +Q  +  +A+  F  ++  G+    + Y                 
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAAS 142

Query: 264 -------------------------------ASVLTALSGLAALGHGKQVHSH-VLRFEI 291
                                          AS+L +      L  G+ +H+  VL    
Sbjct: 143 HCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAA 202

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            +   L N LI MYS C  L  + R+F  M  R  +SW  ++ G S++ M  + +  F  
Sbjct: 203 AASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAA 262

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           MR    V P   T  A+ S           L           GF+ E+     + DM  +
Sbjct: 263 MRRAG-VAP---TRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADMYSK 318

Query: 412 AGRVGEALEFIKNMPFEPTAA 432
            G + EA      MP +   A
Sbjct: 319 CGLLSEACRVFDQMPQKDAVA 339



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 261 VTYASVLTALSGLAALGHGKQVHSH-VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           V  AS+L +      L  G+ +H+  VL     +   L N LI MYS C  L  + R+F 
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            M  R  +SW  ++ G S++ M  + +  F  MR    V P  + Y
Sbjct: 81  AMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAG-VAPTRLIY 125


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 350/607 (57%), Gaps = 35/607 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  L  A    + L  G  +H  +IK      +++   LI FY        A ++F  M 
Sbjct: 176 FPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMP 235

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            ++VVSW AMI+A++      +AL LF  M   D +PN  T  +VL++CA     E G+ 
Sbjct: 236 GKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRW 295

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I S I  + F  H+ + +++LDMY K G I++A+ +F  + E+D+VS T ++ G+A+LG 
Sbjct: 296 ICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGN 355

Query: 241 DEEA-------------------------------IELFRKLQV-EGMISNYVTYASVLT 268
            +EA                               + LF ++Q+ +    + VT    L 
Sbjct: 356 YDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALC 415

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L A+  G  +H ++ + +I     L  SL+DMY+KCG+L  +  VF  +  + V  
Sbjct: 416 ASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYV 475

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W+AM+   + +G G+  ++LF+ M E   +KP++VT+  +L  C+H G+ + G  +F E 
Sbjct: 476 WSAMIGALAMYGQGKAALDLFSSMLEA-YIKPNAVTFTNILCACNHAGLVNEGEQLF-EQ 533

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           ++   G  P+I+HY CVVD+ GRAG + +A  FI+ MP  PTAA+ G+LLGAC  H NV+
Sbjct: 534 MEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVE 593

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E   Q L+E+EP N G +V+LSN+YA AG WE V+ +R+LM++  V K+P  S I+++
Sbjct: 594 LAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVN 653

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ-KEKVLLGHS 567
            I+H F   D SHP  +++ +K+ ++S KFK  GY PDMS +L   +E+   E+ L  HS
Sbjct: 654 GIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHS 713

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLA+ FGLI T    PIR++KN+RIC DCH FAK VS++Y R + LRD+ RFHH   G 
Sbjct: 714 EKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGK 773

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 774 CSCLDYW 780



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 188/339 (55%), Gaps = 11/339 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY--NKCECLSDARKMFDEMRE 121
            ++ C N   L+   ++HAHM++T      Y  ++L+  Y  + C CL  A+ +F+++ +
Sbjct: 78  FIDQCTNTMQLK---QIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQ 134

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQ 180
            N+  W  +I  Y+  +   ++  +F+ ML S +E PN+FTF  +  + +      LG  
Sbjct: 135 PNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSV 194

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H ++IK++  S +++ +SL++ Y  +G    A  VF  +P +DVVS  A+I+ +A  GL
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGL 254

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            ++A+ LF++++++ +  N +T  SVL+A +    L  G+ + S++       +++L N+
Sbjct: 255 PDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA 314

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++DMY KCG +  ++ +F+ MSE+ ++SW  ML G++K G   E   +F+ M  +     
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKW---- 370

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
            +  + A++S     G     L++FHE+   KD    E+
Sbjct: 371 -TAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEV 408


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 348/600 (58%), Gaps = 6/600 (1%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLN---ACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   KA+     + LE +  +  TLL+   ACV       G  VH + ++T       
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L   L+  Y+ C       K+F  M ++NVVSWTAMI++Y++  H  +   LF  M    
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+ F   + L + AG    + GK +H   I++  E  + V ++L++MY K G + EAR
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +F+ + ++D +S   +I GY++  L  EA  LF ++ ++ +  N VT A +L A + L+
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLS 300

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L  G+++H++ +R        + N+L+DMY KCG+L  +RR+FD ++ + +ISW  M+ 
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA 360

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG GR+ + LF  M+    ++PD+ ++ A+L  CSH G+ D G   F+ + + +  
Sbjct: 361 GYGMHGRGRDAIALFEQMKGSG-IQPDAGSFSAILYACSHSGLRDEGWRFFNAMRN-EHR 418

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP+++HY C+VD+L   G + EA EFI+ MP EP ++I  SLL  CR+H NV + E V 
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + + E+EPEN G YV+L+N+YA A RWE V +++  +  + + ++ G SWIE+    H F
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
            A +R+HP    ++  +  ++ + +E G+ P     L   D+   ++ L GHS KLA+ F
Sbjct: 539 FAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAF 598

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G++   +G PIRV KN R+C  CH  AKF+SK+ GR++ LRD NRFHH  EG CSC  YW
Sbjct: 599 GVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 166/305 (54%), Gaps = 2/305 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G  VH +++K  +     +   LI FY K   + DA  +FDEM +R+++SW ++I   + 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                +A+ LF+RM     E +  T  +V+ +C  +    +G  +H   +++   S   +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++LLDMY+          +F  + +++VVS TA+I+ Y + G  ++   LF+++ +EG+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +     S L A +G  +L HGK VH + +R  I   + + N+L++MY KCG +  +R 
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +FD+++++  ISWN ++ GYS+  +  E   LFN M  +  ++P++VT   +L   +   
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ--LRPNAVTMACILPAAASLS 300

Query: 377 MEDRG 381
             +RG
Sbjct: 301 SLERG 305


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/627 (36%), Positives = 354/627 (56%), Gaps = 75/627 (11%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFY-----NKCECLSDARKMFDEMRERNVVSWTAMIS 132
           ++ HA +++T +    Y+   L+  Y     N+      + ++FD +R+ NV  W  MI 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
              +    F+A+ L+  M+ +   PN++T+  VL +C+ A     G Q+H+ ++K     
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 193 HIYVGSS--------------------------------LLDMYAKAGRIHEARGVFECL 220
             ++ SS                                ++D Y + G +  AR +FE +
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 221 P--------------------------------ERDVVSCTAIISGYAQLGLDEEAIELF 248
           P                                ERD +S +A+I GY Q G   EA+E+F
Sbjct: 231 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 290

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
            ++Q E +        SVL+A + L AL  G+ +H++  R  I    VL  SL+DMY+KC
Sbjct: 291 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 350

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  +  VF+ MS + V SWNAM+ G + HG   + ++LF+ M     + P+ +T++ V
Sbjct: 351 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGV 406

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L+ C+HGG+  +GL +F+ +   + G EP+IEHYGC+VD+LGRAG + EA + + ++P E
Sbjct: 407 LNACAHGGLVQKGLTIFNSMRK-EYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 465

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           PT A+ G+LLGACR H NV++GE VG+ L+E+EP+N+G Y +LSN+YA AGRWE+V  VR
Sbjct: 466 PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVR 525

Query: 489 ELMKEKAVTKDPGRSWIELDQ-ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           +LMKE+ +   PG S I+L +  +H F   D SHP  +++   + ++  + +  GY PD 
Sbjct: 526 KLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDP 585

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           S VL+D+DEE+KE  +  HSEKLA+ FGLI T  G  IR++KNLR+C DCH+  K +S+V
Sbjct: 586 SQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQV 645

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           Y R++ +RD+ R+HH   G CSC D+W
Sbjct: 646 YNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 162/377 (42%), Gaps = 72/377 (19%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +K    N +  KA++   EM           Y  +L AC +   +  G +VHAH++K   
Sbjct: 109 IKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 168

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDE------------------------------- 118
               ++ +  I  Y     L +AR++ D+                               
Sbjct: 169 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 228

Query: 119 -MRERNVVS-WTAMISAYS-------------------------------QKAHSFEALN 145
            M +R+++S W AMIS +S                               Q+    EAL 
Sbjct: 229 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 288

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           +F +M +    P +F   +VL++CA     + G+ IH+   +++ +    +G+SL+DMYA
Sbjct: 289 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 348

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K GRI  A  VFE +  ++V S  A+I G A  G  E+AI+LF K+ +     N +T+  
Sbjct: 349 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVG 405

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SE 323
           VL A +    +  G  + + + + + +   +     ++D+  + G LT + +V  ++ +E
Sbjct: 406 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 465

Query: 324 RTVISWNAMLVGYSKHG 340
            T   W A+L    KHG
Sbjct: 466 PTPAVWGALLGACRKHG 482


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 349/606 (57%), Gaps = 34/606 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LL A     +    + VHAH++K       ++ T L+  Y      + AR +  E  
Sbjct: 46  FPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERE 105

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG-FELGK 179
               V W A+IS +++     EA   F+ M R+   P   T+ +VL++C    G   LG 
Sbjct: 106 RDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGM 165

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYA-------------------------------KAG 208
           Q+H  ++ S     + V ++L+DMYA                               + G
Sbjct: 166 QVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLG 225

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           R+ EAR +F  +PERD VS TA+I GY Q     EA+E+FR++Q   + ++  T  SV+T
Sbjct: 226 RVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVIT 285

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L AL  G+ V  ++ R  I     + N+LIDMYSKCGS+  +  VF +M  R   +
Sbjct: 286 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFT 345

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W A+++G + +G G E +E+F+ M   ++  PD VT++ VL+ C+H G+ D+G   F  +
Sbjct: 346 WTAIILGLAVNGYGEEAIEMFHRMIGVSET-PDEVTFIGVLTACTHAGLVDKGREFFLSM 404

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +  +   P + HYGC++D+ GRAG++ EAL+ I  MP  P + I G+LL ACRVH N +
Sbjct: 405 RETYN-IAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           IGE V +RL++++PEN+  Y +LSN+YA   RWEDV R+R  + EK + K+PG S IE++
Sbjct: 464 IGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMN 523

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            I+H F A D+SHPM +E+  K++ +       GY PD++ V  +V EE+K+KVL  HSE
Sbjct: 524 GIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSE 583

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ F L+ +     IR++KNLR+C+DCHN  K +S++YGR+V +RD+ RFHH   G C
Sbjct: 584 KLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFC 643

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 644 SCKDYW 649



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 162/355 (45%), Gaps = 39/355 (10%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           G+   + ++MA  G       Y ++L+AC      +  G +VH  ++ +   P + +   
Sbjct: 126 GEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENA 185

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSW------------------------------- 127
           L+  Y +C  +  A K+FD M+ R+VVSW                               
Sbjct: 186 LVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSW 245

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           TAMI  Y Q A   EAL +F  M  S+   +EFT  +V+T+CA     E+G+ +   + +
Sbjct: 246 TAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSR 305

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
              +   +VG++L+DMY+K G I  A  VF+ +  RD  + TAII G A  G  EEAIE+
Sbjct: 306 QGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEM 365

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYS 306
           F ++       + VT+  VLTA +    +  G++   S    + I   VV    +ID++ 
Sbjct: 366 FHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFG 425

Query: 307 KCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHG---MGREVVELFNLMREEN 356
           + G +T +    D   M+  + I W  +L     HG   +G  V E    M  EN
Sbjct: 426 RAGKITEALDAIDQMPMTPNSTI-WGTLLAACRVHGNSEIGELVTERLLQMDPEN 479



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 22/289 (7%)

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR + E +P R +V+              E+A+  + ++   G + +  T+  +L A++ 
Sbjct: 8   ARRLLEGIPRRCLVAAR------------EDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
            ++    + VH+HV++F +     +  SL+  Y+  G    +R +       T + WNA+
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 333 LVGYSK-HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG-GMEDRGLAVFHEIVD 390
           + G+++    G       ++ R      P  VTY++VLS C  G G    G+ V   +V 
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARA--GAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVG 173

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              G  P++     +VDM      +  A +    M      +    L G  R+   VD  
Sbjct: 174 --SGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLG-RVDEA 230

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
             +  R+ E    +  ++  + + Y  A R+ +   +   M+   V+ D
Sbjct: 231 RDLFGRMPE---RDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSAD 276


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/593 (38%), Positives = 354/593 (59%), Gaps = 37/593 (6%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +LGL      +  LL +C   +  + GQ++H H++K      +Y+ T LI  Y
Sbjct: 77  KLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMY 136

Query: 104 NKCECLSDA-------------------------------RKMFDEMRERNVVSWTAMIS 132
            +   L DA                               +KMFDE+  ++VVSW AMIS
Sbjct: 137 VQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMIS 196

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y++  +  EAL LF  M++++  P+E T  TV+++CA +   ELG+Q+HS I    F S
Sbjct: 197 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS 256

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           ++ + ++L+D+Y+K G +  A G+FE LP +DV+S   +I GY  + L +EA+ LF+++ 
Sbjct: 257 NLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 316

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGS 310
             G   N VT  S+L A + L A+  G+ +H ++ +    + +   L+ SLIDMY+KCG 
Sbjct: 317 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGD 376

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VF+++  +++ SWNAM+ G++ HG      ++F+ MR+ N ++PD +T++ +LS
Sbjct: 377 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK-NGIEPDDITFVGLLS 435

Query: 371 GCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
            CSH GM D G  +F  +  D K    P++EHYGC++D+LG +G   EA E I  M  EP
Sbjct: 436 ACSHSGMLDLGRHIFRSMTQDYK--MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEP 493

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  SLL AC++H NV++GE   Q L++IEPEN G+YV+LSN+YA+AGRW +V   R 
Sbjct: 494 DGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRA 553

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+ +K + K PG S IE+D ++H F   D+ HP   E+   ++++ V  +EAG+VPD S 
Sbjct: 554 LLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSE 613

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           VL +++EE KE  L  HSEKLA+ FGLI T  G  + ++KNLR+C +CH   K
Sbjct: 614 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 211/430 (49%), Gaps = 40/430 (9%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECLSDARKMFDEMRERNVVSWT 128
           + L+  + +HA MIKT      Y  ++LI F       + L  A  +F+ ++E N++ W 
Sbjct: 1   QILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWN 60

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            M   ++  +    AL L++ M+     PN +TF  +L SCA +  F+ G+QIH  ++K 
Sbjct: 61  TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
             +  +YV +SL+ MY + GR+ +A  VF+  P RDVVS TA+I GYA  G  E A ++F
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 249 RKLQVE------GMISNYV-------------------------TYASVLTALSGLAALG 277
            ++ V+       MIS Y                          T  +V++A +   ++ 
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+QVHS +      S + + N+LID+YSKCG L  +  +F+ +  + VISWN ++ GY+
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK-DGFE 396
              + +E + LF  M    +  P+ VT L++L  C+H G  D G  + H  +D +  G  
Sbjct: 301 HMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGRWI-HVYIDKRLKGVA 358

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
                   ++DM  + G + EA   + N     + +   +++    +H   D    +  R
Sbjct: 359 NASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSR 417

Query: 457 LME--IEPEN 464
           + +  IEP++
Sbjct: 418 MRKNGIEPDD 427


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/563 (39%), Positives = 345/563 (61%), Gaps = 4/563 (0%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
            L  G  +HA++IK  +   + +   LI  Y+KC       + F  M +++++SWT +I+
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
            Y+Q     EAL LF  + +   E +E    ++L + +      + K+IH  I++     
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD 520

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            + + + L+D+Y K   +  A  VFE +  +DVVS T++IS  A  G + EA+ELFR++ 
Sbjct: 521 TV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV 579

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G+ ++ V    +L+A + L+AL  G+++H ++LR        +  +++DMY+ CG L 
Sbjct: 580 ETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            ++ VFD +  + ++ + +M+  Y  HG G+  VELF+ MR EN V PD +++LA+L  C
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHEN-VSPDHISFLALLYAC 698

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           SH G+ D G   F +I++ +   EP  EHY C+VDMLGRA  V EA EF+K M  EPTA 
Sbjct: 699 SHAGLLDEGRG-FLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAE 757

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
           +  +LL ACR H   +IGE   QRL+E+EP+N GN V++SN++A  GRW DV +VR  MK
Sbjct: 758 VWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMK 817

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCVL 551
              + K PG SWIE+D  +H F A D+SHP  +E+  K+ +++ K  +E GYV D   VL
Sbjct: 818 ASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVL 877

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           ++VDE +K ++L GHSE++A+ +GL+ TP+ A +R+ KNLR+C DCH F K VSK++ R 
Sbjct: 878 HNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRD 937

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           + +RD NRFHH   G CSCGD W
Sbjct: 938 IVMRDANRFHHFESGLCSCGDSW 960



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 197/401 (49%), Gaps = 19/401 (4%)

Query: 19  QQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           +Q   P   P+P   K  C +G LT+A   +         E +  +L  C  +R +  G+
Sbjct: 44  RQSNQPVQVPSP---KLACFDGVLTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGR 100

Query: 79  RVHAHMIKTCYRPPV-YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           ++H+ + KT     + +L  +L+  Y KC  L DA K+FDEM +R   +W  MI AY   
Sbjct: 101 QLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSN 160

Query: 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
                AL L+  M          +F  +L +CA       G ++HSL++K  + S  ++ 
Sbjct: 161 GEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIV 220

Query: 198 SSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           ++L+ MYAK   +  AR +F+   E+ D V   +I+S Y+  G   E +ELFR++ + G 
Sbjct: 221 NALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP 280

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSR 315
             N  T  S LTA  G +    GK++H+ VL+     S + + N+LI MY++CG +  + 
Sbjct: 281 APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH- 374
           R+   M+   V++WN+++ GY ++ M +E +E F+ M      K D V+  ++++     
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGH-KSDEVSMTSIIAASGRL 399

Query: 375 ----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
                GME     + H       G++  ++    ++DM  +
Sbjct: 400 SNLLAGMELHAYVIKH-------GWDSNLQVGNTLIDMYSK 433



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 188/357 (52%), Gaps = 5/357 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           + L AC      + G+ +HA ++K+  +   +Y+   LI  Y +C  +  A ++  +M  
Sbjct: 289 SALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNN 348

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            +VV+W ++I  Y Q     EAL  F  M+ +  + +E +  +++ +         G ++
Sbjct: 349 ADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMEL 408

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ +IK  ++S++ VG++L+DMY+K          F  + ++D++S T +I+GYAQ    
Sbjct: 409 HAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCH 468

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EA+ELFR +  + M  + +   S+L A S L ++   K++H H+LR  +    V+QN L
Sbjct: 469 VEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD-TVIQNEL 527

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +D+Y KC ++ Y+ RVF+++  + V+SW +M+   + +G   E VELF  M E   +  D
Sbjct: 528 VDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG-LSAD 586

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           SV  L +LS  +     ++G  +   ++  + GF  E      VVDM    G +  A
Sbjct: 587 SVALLCILSAAASLSALNKGREIHCYLL--RKGFCLEGSIAVAVVDMYACCGDLQSA 641


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 352/559 (62%), Gaps = 6/559 (1%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           ++H   ++  +   +++ + L   Y+KC  LS+A ++FD+M +++ V+WTAMI  Y++  
Sbjct: 62  QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 121

Query: 139 HSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            S EA  L  R ++ +     ++  F +VL++  G     L K IH  + K+ FE  + V
Sbjct: 122 -SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
            ++L+DMYAK+  +  A  V +  P   +VVS T++I GY +    EEA+ ++ +L+ +G
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N  T++S++   +  A L  G Q+H+ V++ ++     + ++L+DMY KCG ++ S 
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 300

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++F+ +  RT I+WNA++  +++HG GRE ++ F+ M     ++P+ + ++++L+ CSH 
Sbjct: 301 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSG-IRPNHIAFVSLLTACSHA 359

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D GL  F+ + +   G EP+ EHY C++D  GRAGR+ EA +FI  MP +P A    
Sbjct: 360 GLVDEGLKYFYSMKEAH-GIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWC 418

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGACR+  + ++GE   Q LM++EP N G +V LS +YAS G+WEDV  VR+LM++  
Sbjct: 419 SLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSR 478

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG SW++ ++  H F + D SHP ++++  K+++L+ + KE GY+PD S +  +++
Sbjct: 479 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLE 538

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +  KE++L  HSE++A+ F LI  P   PI V KNLRIC+DCH   KF+ KV  R + +R
Sbjct: 539 DIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 598

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH V G CSCGDYW
Sbjct: 599 DNSRFHHFVNGRCSCGDYW 617



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 165/319 (51%), Gaps = 11/319 (3%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M  RN VSWT ++S  SQ     +AL  F  M R+   P  F  ++   + A       G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            Q+H + ++  F++ ++V S+L DMY+K G + EA  VF+ +P++D V+ TA+I GYA+ 
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 239 GLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           G  E A+  FR ++ EG++ ++   + SVL+A  GL      K +H  V +      V +
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +N+LIDMY+K   +  + RV   +     V+S  +M+ GY +     E + ++  +R + 
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KDGFEPEIEHYGCVVDMLGRAG 413
            V+P+  T+ +++ GC+   + ++G  +  +++     +D F         +VDM G+ G
Sbjct: 241 -VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-----LVDMYGKCG 294

Query: 414 RVGEALEFIKNMPFEPTAA 432
            +  +++    + +    A
Sbjct: 295 LISLSMQLFNEIEYRTDIA 313



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 1/176 (0%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +E+   G+E     + +++  C  Q  L  G ++HA +IKT      ++ + L+  Y KC
Sbjct: 234 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKC 293

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S + ++F+E+  R  ++W A+I+ ++Q  H  EA+  F RM+ S   PN   F ++L
Sbjct: 294 GLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 353

Query: 167 TSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           T+C+ A   + G K  +S+      E      S ++D Y +AGR+ EA      +P
Sbjct: 354 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 409


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 343/605 (56%), Gaps = 71/605 (11%)

Query: 99  LIVFYNKCEC---LSDARKMFDEMRERNVVSWT--------------------------- 128
           LI  Y KC+      DARK+ DEM E++ ++WT                           
Sbjct: 202 LIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFD 261

Query: 129 ----AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
               AMIS Y Q     EA  LF RM+     P+EFTF ++L++CA A  F  GK +H  
Sbjct: 262 VVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQ 321

Query: 185 IIK--SNF--ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            I+   +F  E+ + V ++L+ +Y+K+G+I  A  +F+ +  +DVVS   I+SGY + G 
Sbjct: 322 FIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGC 381

Query: 241 DEEAIELFRKLQVEG------MISNYV-------------------------TYASVLTA 269
            + A  +F+++  +       M+S YV                         TYA  + A
Sbjct: 382 LDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAA 441

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L AL HGKQ+H+H+++    +     N+L+ MY++CG++  +R VF  M     +SW
Sbjct: 442 CGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSW 501

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           NAM+    +HG GRE +ELF+ M  +  + PD +++L +L+ C+H G+ D G   F E +
Sbjct: 502 NAMISALGQHGHGREALELFDQMVAQG-IYPDRISFLTILTACNHAGLVDDGFQYF-ESM 559

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           +   G  P  +HY  ++D+LGRAGR+GEA + IK MPFEPT AI  ++L  CR++ ++++
Sbjct: 560 ERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMEL 619

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G +   +L ++ PE+ G Y++LSN Y++AGRW D  RVR+LM+++ V K+PG SWIE+  
Sbjct: 620 GAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGN 679

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F   D  HP   E+   ++ +  K ++ GYVPD    L D+   +KE VL  HSE+
Sbjct: 680 KVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSER 739

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA++FGL+  P GA + V+KNL+IC DCH    F+S+  GR++ +RD  RFHH  +G CS
Sbjct: 740 LAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECS 799

Query: 630 CGDYW 634
           CG+YW
Sbjct: 800 CGNYW 804



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 181/406 (44%), Gaps = 80/406 (19%)

Query: 97  TRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           T L+  Y     L D+   FD +    R+ V   AMISA+++ + +  A+++F  +L SD
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 155 TE--PNEFTFATVLTSCAGAFGFELG--KQIHSLIIKSNFESHIYVGSSLLDMYAK---A 207
               P++++F ++L++        +    Q+H  + K    + + V ++L+ +Y K    
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 208 GRIHEARGVFECLPERDVVSCT-------------------------------AIISGYA 236
           G   +AR V + +PE+D ++ T                               A+ISGY 
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV- 295
           Q G+  EA ELFR++  + +  +  T+ S+L+A +      HGK VH   +R + P +V 
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQ-PDFVP 331

Query: 296 ----VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH------------ 339
                + N+L+ +YSK G +  + ++FD+M+ + V+SWN +L GY +             
Sbjct: 332 EAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKE 391

Query: 340 -------------------GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
                              G+  + ++LFN MR E+ VKP   TY   ++ C   G    
Sbjct: 392 MPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSED-VKPCDYTYAGAVAACGELGALKH 450

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           G  +   +V C  GFE        ++ M  R G V +A      MP
Sbjct: 451 GKQLHAHLVQC--GFEASNSAGNALLTMYARCGAVKDARLVFLVMP 494



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 37/317 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK--TCYRPPVYL--RTRLIVFYNK----------- 105
           + +LL+AC N      G+ VH   I+    + P   L     L+  Y+K           
Sbjct: 299 FTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIF 358

Query: 106 --------------------CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
                                 CL +A ++F EM  ++ +SW  M+S Y     + +AL 
Sbjct: 359 DSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALK 418

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +M   D +P ++T+A  + +C      + GKQ+H+ +++  FE+    G++LL MYA
Sbjct: 419 LFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYA 478

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G + +AR VF  +P  D VS  A+IS   Q G   EA+ELF ++  +G+  + +++ +
Sbjct: 479 RCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLT 538

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           +LTA +    +  G Q    + R F I         LID+  + G +  +R +   M  E
Sbjct: 539 ILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFE 598

Query: 324 RTVISWNAMLVGYSKHG 340
            T   W A+L G   +G
Sbjct: 599 PTPAIWEAILSGCRING 615



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 128/274 (46%), Gaps = 43/274 (15%)

Query: 197 GSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQV- 253
            +SL+  YA AGR+ ++   F+ +P   RD V   A+IS +A+  L   A+ +FR L   
Sbjct: 92  ATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLAS 151

Query: 254 -EGMISNYVTYASVLTALSGL--AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC-- 308
            + +  +  ++ S+L+A+  +   A+ H  Q+H  V +    + + + N+LI +Y KC  
Sbjct: 152 DDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDA 211

Query: 309 -GSLTYSRRVFDNMSERTVIS-------------------------------WNAMLVGY 336
            G    +R+V D M E+  ++                               WNAM+ GY
Sbjct: 212 PGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGY 271

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            + GM  E  ELF  M  + ++ PD  T+ ++LS C++ G    G +V  + +  +  F 
Sbjct: 272 VQSGMCAEAFELFRRMVSK-RIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFV 330

Query: 397 PE--IEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           PE  +     +V +  ++G++  A +   +M  +
Sbjct: 331 PEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK 364


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 337/569 (59%), Gaps = 4/569 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+A  N   L+ GQ +HA + K  +   V +   L+  Y K  C+ D  K+++ M +R
Sbjct: 420 SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR 479

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SW A +S           L +F  ML     PN +TF ++L SC+  F    G+Q+H
Sbjct: 480 DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVH 539

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + IIK+  + + +V ++L+DMYAK   + +A   F  L  RD+ + T II+ YAQ    E
Sbjct: 540 AHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGE 599

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A+  FR++Q EG+  N  T A  L+  S LA+L  G+Q+HS V +    S + + ++L+
Sbjct: 600 KALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALV 659

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG +  +  +F+ +  R  I+WN ++ GY+++G G + +  F +M +E  + PD 
Sbjct: 660 DMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG-ISPDG 718

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           VT+  +LS CSH G+ + G   F+ +   +D G  P ++H  C+VD+LGR G+  E  +F
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMY--RDFGISPTVDHCACMVDILGRVGKFDELEDF 776

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+ M     A I  ++LGA ++H N+ +GE    +L E++PE   +Y++LSN++A+ GRW
Sbjct: 777 IQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRW 836

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           +DV RVR LM  K V K+PG SW+E +  +HTF + D SHP  +E+  K+ +L  +    
Sbjct: 837 DDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASI 896

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
            YVP    VL++V E +K++ L  HSE+LAL F LI T     IR+ KNLRIC DCH+  
Sbjct: 897 QYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVM 956

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           K +S +  +++ +RD  RFHH   G CSC
Sbjct: 957 KHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 203/371 (54%), Gaps = 5/371 (1%)

Query: 50  ATLGLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           + + L+++  E+   T+L  C N + L+ GQ +H+ +IK  Y    ++   L+  Y+KC 
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              DA  +F  +++ ++V W+A+I+   Q+  S E++ LF  M   DT PN++T  ++L+
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +       + G+ IH+ + K  FE+ + V ++L+ MY K G +H+   ++E + +RD++S
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A +SG    G+ +  + +F  +  EG I N  T+ S+L + S L  + +G+QVH+H++
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII 543

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           + ++     +  +LIDMY+KC  L  +   F+ +S R + +W  ++  Y++   G + + 
Sbjct: 544 KNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
            F  M++E  VKP+  T    LSGCS     + G  + H +V  K G   ++     +VD
Sbjct: 604 YFRQMQQEG-VKPNEFTLAGCLSGCSSLASLEGGQQL-HSMV-FKSGHVSDMFVGSALVD 660

Query: 408 MLGRAGRVGEA 418
           M  + G + EA
Sbjct: 661 MYAKCGCMEEA 671



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 1/311 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T L AC     L  G+++HA   K      +++ + L+  Y KC  +  A KMF  M E+
Sbjct: 218 TGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ 277

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N V+W  +++ Y+Q+      L LF  M+  D + NEFT  TVL  CA +   + G+ IH
Sbjct: 278 NDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           SLIIK  +E + ++G  L+DMY+K G   +A GVF+ + + D+V  +A+I+   Q G  E
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           E+I+LF  +++   + N  T  S+L+A +    L +G+ +H+ V ++   + V + N+L+
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY K G +    +++++M +R +ISWNA L G    GM    + +F  M EE  + P+ 
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI-PNM 516

Query: 363 VTYLAVLSGCS 373
            T++++L  CS
Sbjct: 517 YTFISILGSCS 527



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 221/463 (47%), Gaps = 40/463 (8%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           + + Y ++L  C ++R+L   + +H  ++K    P  +L   L+  Y KC   + AR + 
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
            +M +R+VVSWTA+I     +  + +++ LF  M      PNEFT AT L +C+     +
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALD 230

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LGKQ+H+   K      ++VGS+L+D+YAK G I  A  +F  +PE++ V+   +++GYA
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q G     ++LF  +    +  N  T  +VL   +    L  G+ +HS +++        
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +   L+DMYSKCG    +  VF  + +  ++ W+A++    + G   E ++LF+LMR  +
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            + P+  T  ++LS  ++ G    G ++ H  V  K GFE ++     +V M  + G V 
Sbjct: 411 TL-PNQYTICSLLSAATNTGNLQYGQSI-HACV-WKYGFETDVAVSNALVTMYMKNGCVH 467

Query: 417 EALEFIKNM----------------------------------PFEPTAAILGSLLGACR 442
           +  +  ++M                                   F P      S+LG+C 
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVI--LSNLYASAGRWED 483
             ++V  G  V   +++ + ++  N+V   L ++YA     ED
Sbjct: 528 CLFDVHYGRQVHAHIIKNQLDD-NNFVCTALIDMYAKCMYLED 569


>gi|302765350|ref|XP_002966096.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
 gi|300166910|gb|EFJ33516.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
          Length = 598

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 341/578 (58%), Gaps = 9/578 (1%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           E Y  LL  C N+R L  G+RVH H+ +  Y    +L   L+  Y KC  + DA   FD 
Sbjct: 28  EAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAFDS 87

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +R++++ SW  MI+A+++      A+ +F  M  +  + N  TF  VL   A     E G
Sbjct: 88  IRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPARIKRNRGTFVAVL---AAGLDLEQG 144

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K+IH  +  S  E +  V ++LL MY   G   +AR VFE +P+ D+V   A+I+ Y Q 
Sbjct: 145 KKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAYVQN 204

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVV 296
                A+E+F +L++EG+  N VTY + L A + LA    G+ +H  V      + S+ V
Sbjct: 205 DQGRGALEVFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAGLLLTSFKV 264

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             NSL++MY K G+L  +  +F++M  R + SWN ++  Y  +G+G   V+ F     E 
Sbjct: 265 -ANSLVNMYGKSGNLEAAEEIFESMPSRDISSWNVLMTVYGHNGLGDLAVDRFTESCLEG 323

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             +PDS+T+LAVL  CSH G+ D G+ +   I +   G +P   HY CVVD+LGR+G + 
Sbjct: 324 -FEPDSITFLAVLQACSHAGLLDTGVELLVSIQE-DWGIDPTQYHYLCVVDLLGRSGELV 381

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           +A   I NMPFEP      SLLG CRV+ +V  GE   QRL+ +  E++  YV+++N+YA
Sbjct: 382 KAEALINNMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLL-VMSEDSSPYVLMANIYA 440

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S   ++   R+R +M ++ V K PG SWIE+   +HTF A+D+ H  +EE+ A + +L V
Sbjct: 441 SIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYAGLDRLFV 500

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + +  GY PD    LYDV+EE+K ++LL H EKLA+ FGL+ TP+G+P+ V+KNLR+C D
Sbjct: 501 ELQREGYRPDTRVALYDVEEEKKVRMLLHHGEKLAIMFGLMSTPDGSPLFVLKNLRVCAD 560

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K ++K+  RK+ +RD +RFHH   G CSC DYW
Sbjct: 561 CHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 5/269 (1%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N   +A +L  CA       GK++H  + +  +E+  ++G+ L+ MY K   I +A   F
Sbjct: 26  NTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAF 85

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + + ++D+ S   +I+ +A+ G  + A+ +F+ ++   +  N  T+ +VL A  GL  L 
Sbjct: 86  DSIRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPARIKRNRGTFVAVLAA--GL-DLE 142

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GK++H  V    +    ++  +L+ MY  CGS   +R+VF+ + +  ++ WNAM+  Y 
Sbjct: 143 QGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAYV 202

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           ++  GR  +E+F+ +  E  VK + VTYLA L  C+   ++  G ++ H+ V        
Sbjct: 203 QNDQGRGALEVFHRLEMEG-VKCNEVTYLAALDACACLAVQSEGRSL-HKRVSEAGLLLT 260

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +    +V+M G++G +  A E  ++MP
Sbjct: 261 SFKVANSLVNMYGKSGNLEAAEEIFESMP 289



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           + L  E   SN   YA++L   +    L  GK+VH H+ R+   +   L N L+ MY KC
Sbjct: 16  KDLGQERFCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKC 75

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            S+  +   FD++ ++ + SWN M+  ++++G     V +F LM E  ++K +  T++AV
Sbjct: 76  SSIDDAALAFDSIRKKDLFSWNIMIAAFAENGCLDRAVAVFQLM-EPARIKRNRGTFVAV 134

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           L+     G++       H+ V    G E        ++ M G  G   +A +  + +P
Sbjct: 135 LA----AGLDLEQGKKIHDSVH-SSGLERNEMVATALLSMYGACGSTDDARQVFEQVP 187


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 347/604 (57%), Gaps = 38/604 (6%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRE 121
           LL  C N   LR   ++H  M+KT         ++L+ F        L+ AR +FD +  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            N   W  MI  YS      EAL L+  ML      N +TF  +L +C+     E  +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR--------------------------- 214
           H+ IIK  F S IY  +SLL++Y+K+G I  AR                           
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 215 ----GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
                +F  +PER+++S T++ISG    G  +EA+ LF ++Q  G+  + V   S L A 
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + L  L  GK +H+++ + EI    +L   LIDMY+KCG L  +  VF  M E+ V  W 
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+ GY+ HG GRE +E F  M+    V+P+ +T+  +L+ CSH G+      +F E ++
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAG-VEPNQMTFTGILTACSHAGLVHEAKLLF-ESME 378

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              GF+P IEHYGC+VD+LGRAG + EA E I+NMP +P AAI G+LL AC +H N+++G
Sbjct: 379 RIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELG 438

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           + +G+ L++++P + G Y+ L++++A+AG W    RVR  MKE+ V+K PG S I ++  
Sbjct: 439 KQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGT 498

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
            H F A D SHP  +E+   ++Q+  + +E GY P +  +L D+++++KE  +  HSEKL
Sbjct: 499 AHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKL 558

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+TFGLI T  G  IR++KNLR+C DCH   K +SKVY R++ +RD+ RFH   +G C+C
Sbjct: 559 AVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTC 618

Query: 631 GDYW 634
           GDYW
Sbjct: 619 GDYW 622


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 352/582 (60%), Gaps = 17/582 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL  C   +TL   ++VHAHMI T      Y  +R+++  +     + A  +F+ +    
Sbjct: 15  LLEKC---KTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTI-VFTHALSIFNHIPNPT 70

Query: 124 VVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQI 181
           +  +  +IS+ +  K H+  A +L+ R+L   T +PN FTF ++  +C        G+ +
Sbjct: 71  IFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRAL 130

Query: 182 HSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ--- 237
           H+ ++K        +V ++LL+ YAK G++   R +F  + + D+ S  +I+S Y     
Sbjct: 131 HTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSG 190

Query: 238 -----LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
                + L  E + LF ++Q   + +N VT  ++++A + L AL  G   H +VL+  + 
Sbjct: 191 AICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLK 250

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
               +  +LIDMYSKCG L  + ++FD +  R  + +NAM+ G++ HG G + ++LF  M
Sbjct: 251 LNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKM 310

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
             E  + PD VT +  +  CSH G+ + G  VF  + +   G EP++EHYGC+VD+LGRA
Sbjct: 311 TLEG-LAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVY-GVEPKLEHYGCLVDLLGRA 368

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GR+ EA E + NMP +P A I  SLLGA RVH N++IGE V + L+++EPE +GNYV+LS
Sbjct: 369 GRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLS 428

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YAS  RW+DV RVR+LMK+  + K PG S +E+   +H F   D++HP  +E+  K++
Sbjct: 429 NMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLE 488

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           ++S +  E G+ P    VL+D++EE+KE  L  HSE+LA+ F LI +   APIR+IKNLR
Sbjct: 489 EMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLR 548

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +C DCH  +K +SK+Y R++ +RD+NRFHH  EG CSC DYW
Sbjct: 549 VCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 17/294 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK----TCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           + +L  AC +Q  LR G+ +H H++K    TC     +++  L+ +Y KC  +   R +F
Sbjct: 111 FPSLFKACGSQPWLRHGRALHTHVLKFLEPTC---DPFVQAALLNYYAKCGKVGACRYLF 167

Query: 117 DEMRERNVVSWTAMISAYSQKAH--------SFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +++ + ++ SW +++SAY   +         S E L LFI M +S  + NE T   ++++
Sbjct: 168 NQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISA 227

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA       G   H  ++K N + + +VG++L+DMY+K G +  A  +F+ LP RD +  
Sbjct: 228 CAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCY 287

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+I G+A  G   +A++LF+K+ +EG+  + VT    + + S +  +  G  V   +  
Sbjct: 288 NAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKE 347

Query: 289 -FEIPSYVVLQNSLIDMYSKCGSLTYS-RRVFDNMSERTVISWNAMLVGYSKHG 340
            + +   +     L+D+  + G L  +  RV +   +   + W ++L     HG
Sbjct: 348 VYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHG 401


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 345/550 (62%), Gaps = 2/550 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A V   ++  G+ +H   IKT      ++   L+  Y KC  + DAR  F+ +   
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+  + MIS Y+Q   + +A  LF+R++RS   PNE++ ++VL +C      + GKQIH
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +  IK   ES ++VG++L+D YAK   +  +  +F  L + + VS   I+ G++Q GL E
Sbjct: 388 NHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGE 447

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ +F ++Q   M    VTY+SVL A +  A++ H  Q+H  + +    +  V+ NSLI
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLI 507

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           D Y+KCG +  + +VF ++ ER +ISWNA++ GY+ HG   + +ELF+ M + N V+ + 
Sbjct: 508 DTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSN-VESND 566

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++A+LS CS  G+ + GL++F + +    G +P +EHY C+V +LGRAGR+ +AL+FI
Sbjct: 567 ITFVALLSVCSSTGLVNHGLSLF-DSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            ++P  P+A +  +LL +C +H NV +G F  ++++EIEP++   YV+LSN+YA+AG  +
Sbjct: 626 GDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD 685

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  +R+ M+   V K PG SW+E+   +H F      HP    ++A ++ L++K    G
Sbjct: 686 QVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREG 745

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y+PD++ VL+DVD+EQK ++L  HSE+LAL +GL+ TP G PIR++KNLR C+DCH    
Sbjct: 746 YIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFT 805

Query: 603 FVSKVYGRKV 612
            +SK+  R++
Sbjct: 806 VISKIVKREI 815



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 190/352 (53%), Gaps = 5/352 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L GG  VH+   K  +    ++ + LI  Y+ C  +SDA  +F+ +  ++ V WTAM+S 
Sbjct: 180 LAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           YS+      A  +F +M  S  +PN F   +VL +        LGK IH   IK+  ++ 
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            +VG +LLDMYAK G I +AR  FE +P  DV+  + +IS YAQ   +E+A ELF +L  
Sbjct: 298 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 357

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             ++ N  + +SVL A + +  L  GKQ+H+H ++    S + + N+L+D Y+KC  +  
Sbjct: 358 SSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDS 417

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           S ++F ++ +   +SWN ++VG+S+ G+G E + +F  M +  ++    VTY +VL  C+
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM-QAAQMPCTQVTYSSVLRACA 476

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                 R     H  ++ K  F  +      ++D   + G + +AL+  +++
Sbjct: 477 STA-SIRHAGQIHCSIE-KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL 526



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 176/364 (48%), Gaps = 7/364 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           L  C+ +   RGG+ VH H+++     R  ++    L+  Y K   L+ AR++FD M ER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+VS+  ++ A++Q+     A  LF R+     E N+F   T+L          L   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S   K   + + +VGS L+D Y+    + +A  VF  +  +D V  TA++S Y++    E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            A  +F K++V G   N     SVL A   L ++  GK +H   ++    +   +  +L+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPD 361
           DMY+KCG +  +R  F+ +    VI  + M+  Y++     +  ELF  LMR  + V P+
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR--SSVLPN 363

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             +  +VL  C++    D G  + +  +  K G E ++     ++D   +   +  +L+ 
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAI--KIGHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 422 IKNM 425
             ++
Sbjct: 422 FSSL 425



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 1/154 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L AC +  ++R   ++H  + K+ +     +   LI  Y KC  + DA K+F  + 
Sbjct: 468 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 527

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER+++SW A+IS Y+    + +AL LF RM +S+ E N+ TF  +L+ C+       G  
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +  S+ I    +  +   + ++ +  +AGR+++A
Sbjct: 588 LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDA 621


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/592 (38%), Positives = 343/592 (57%), Gaps = 40/592 (6%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           I M  +G+ +    Y  +L  C ++     G+ VH  +++T +   +++   L+  Y KC
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC 180

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             + DA ++FD M  R+VV WTAMI+ Y Q     +AL LF +M       +E T A  +
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEIT-AISV 239

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR--IHEARGVFECLPERD 224
            S  G  G                                 GR  I  AR VF+ + ER+
Sbjct: 240 ASAVGQLG--------------------------------DGRMAISRARLVFDRMEERN 267

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            +S  +++SGY Q G   +A+ LF ++Q      N VT   +++A S L +   G+++H+
Sbjct: 268 GISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHN 327

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN--MSERTVISWNAMLVGYSKHGMG 342
            V+  ++     L+N+++DMY KCG L  +  +F+N  + ER V SWN ++ GY  HG G
Sbjct: 328 FVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHG 387

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           +E +ELF+ M+ E  V+P+ +T+ ++LS CSH G+ D G   F ++   K    PE++HY
Sbjct: 388 KEALELFSRMQVEG-VEPNDITFTSILSACSHAGLIDEGRKCFADMT--KLSVRPEMKHY 444

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            C+VDMLGRAG + EA   IK +P  P+  + G+LL ACR+H N ++GE     L ++EP
Sbjct: 445 ACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEP 504

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           E+ G YV++SN+YA++ +W++V  VR+ MK + + K    S IE    +H FH +D+S P
Sbjct: 505 EHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSP 564

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              E+  KV+ L+++ K  GYVPD+SCVL+DV+ E KE +L  HSEKLA+ FG++   +G
Sbjct: 565 YYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQG 624

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PI+V KNLR+C DCH   KF+S +YGRK+ +RD NRFHH   G CSCGDYW
Sbjct: 625 MPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 188/374 (50%), Gaps = 48/374 (12%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           YD LL  C +  TL+    +H+ +    +    P +L  RLI+ Y+K   L  AR +FD 
Sbjct: 28  YDHLLQCCTSLTTLK---LIHSSLSTRGFLLHTPHFL-ARLIILYSKLGDLHSARTLFDH 83

Query: 119 M--------RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
                    +  N      M+ AY+    S+EA++L+I M R     N FT+  VL  CA
Sbjct: 84  RHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA 143

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
              G   G+ +H  ++++ F S ++V ++L+DMYAK G I +A  VF+ +  RDVV  TA
Sbjct: 144 SELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTA 203

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+ Y Q     +A+ LFRK+Q EG + + +T  SV +A   +  LG G+          
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA---VGQLGDGRM--------- 251

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
                              +++ +R VFD M ER  ISWN+ML GY+++G   + + LFN
Sbjct: 252 -------------------AISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 292

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M + ++  P+ VT L ++S CS+ G +  G  + + ++  K   +  + +   ++DM  
Sbjct: 293 QM-QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYM 349

Query: 411 RAGRVGEALEFIKN 424
           + G +  A+E   N
Sbjct: 350 KCGDLDTAVEMFNN 363



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 13/200 (6%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYD-------TLLNACVNQRTLRGGQRVHAHMI 85
           L     NG+ T AL    +L  +M+  E D        +++AC    +   G+++H  +I
Sbjct: 275 LSGYTQNGRPTDAL----SLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI 330

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EMRERNVVSWTAMISAYSQKAHSFEA 143
            +       LR  ++  Y KC  L  A +MF+  E+ ER+V SW  +IS Y    H  EA
Sbjct: 331 SSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEA 390

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           L LF RM     EPN+ TF ++L++C+ A   + G++  + + K +    +   + ++DM
Sbjct: 391 LELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDM 450

Query: 204 YAKAGRIHEARGVFECLPER 223
             +AG ++EA  + + +P R
Sbjct: 451 LGRAGFLNEAFRLIKKIPSR 470


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 356/602 (59%), Gaps = 20/602 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           ++ +  + M   G E       ++++AC    ++R GQ++H+  ++        +   L+
Sbjct: 229 KVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLV 288

Query: 101 VFYNKCE---CLSDARKMFDEMRERNVVSWTAMISAYSQKA-HSFEALNLFIRMLRSDTE 156
             Y K +    +  ARK+F  M   NV+SWTA+IS Y Q        + LF  ML     
Sbjct: 289 DMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIR 348

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN  T++ +L +CA     + G+QIH+ ++K++      VG++L+ MYA++G + EAR  
Sbjct: 349 PNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKA 408

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM---ISNYVTYASVLTALSGL 273
           F+ L E +++S +  +        + E        ++EGM   +S + T+AS+L+A + +
Sbjct: 409 FDQLYETNILSMSPDV--------ETERNNASCSSKIEGMDDGVSTF-TFASLLSAAASV 459

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
             L  G+++H+  ++    S   + NSL+ MY++CG L  + R FD M +  VISW +++
Sbjct: 460 GLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSII 519

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            G +KHG  ++ + +F+ M     VKP+ VTY+AVLS CSH G+   G   F  +   KD
Sbjct: 520 SGLAKHGYAKQALSMFHDMILAG-VKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQ--KD 576

Query: 394 -GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
            G  P +EHY C+VD+L R+G V EA +FI  MP +  A +  +LL ACR + N +IGE 
Sbjct: 577 HGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEI 636

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
               ++ +EP +   YV+LSNLYA AG W++V R+R LM++K ++K+ G SW+++   +H
Sbjct: 637 AANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIH 696

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D SHP+  ++ AK+  L  + K+ GYVPD S VL+D+ EE KE+ LL HSEK+A+
Sbjct: 697 EFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAV 756

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGLI T    P+R+ KNLR+C DCH+  K++SK  GR++ LRD NRFH + +G CSCG+
Sbjct: 757 AFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGE 816

Query: 633 YW 634
           YW
Sbjct: 817 YW 818



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 173/326 (53%), Gaps = 9/326 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-RE 121
           LL +      LR G+ +H  ++++        +   L+  Y+KC  +  AR++FD+M   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQ 180
           R++VSWTAM S  ++     E+L L   ML     PN FT      +C     F L G  
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 181 IHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +   ++K+ F  + + VG +L+DM+A+ G +  A+ VF+ L ER  V  T +I+ Y Q G
Sbjct: 166 VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAG 225

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              + +ELF  +  +G   +  + +S+++A + L ++  G+Q+HS  LR  + S   +  
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 300 SLIDMYSKCG---SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG-REVVELFNLMREE 355
            L+DMY+K     S+ ++R+VF  M    V+SW A++ GY + G+    V+ LF  M  E
Sbjct: 286 GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE 345

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRG 381
           + ++P+ +TY  +L  C++   +D G
Sbjct: 346 S-IRPNHITYSNLLKACANLSDQDSG 370



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 35/223 (15%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNM- 321
           A +LT+ +    L  G+ +H  +LR EI  +  V+ NSL+ MYSKCG++  +RRVFD M 
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC 103

Query: 322 SERTVISWNAMLVGYSKHGMGREVVEL-------------FNLMREENKVKPDSVTYLA- 367
             R ++SW AM    +++G  RE + L             F L        P  +  LA 
Sbjct: 104 GVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163

Query: 368 --VLSGCSHGGMEDRGLAVFHEIVD--CKDG--------FEPEIEHYGCVVDML------ 409
             VL      G     ++V   ++D   ++G        F+  IE    V  +L      
Sbjct: 164 GVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQ 223

Query: 410 -GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
            G A +V E    + +  FEP    + S++ AC    +V +G+
Sbjct: 224 AGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQ 266


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/599 (38%), Positives = 345/599 (57%), Gaps = 4/599 (0%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C      +   +M   G+ +      T+L A    + ++ G  +    +K  +    Y+ 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T LI  ++KCE +  AR +F  +R+ ++VS+ A+IS +S    +  A+  F  +L S   
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 157 PNEFTFATVLTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            +  T    L   +  FG   L   I    +KS       V ++L  +Y++   I  AR 
Sbjct: 303 VSSSTMVG-LIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F+   E+ V +  A+ISGYAQ GL E AI LF+++       N VT  S+L+A + L A
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  GK VH  +    +   + +  +LIDMY+KCG+++ + ++FD  SE+  ++WN M+ G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y  HG G E ++LFN M      +P SVT+L+VL  CSH G+   G  +FH +V+ K   
Sbjct: 482 YGLHGYGDEALKLFNEMLHLG-FQPSSVTFLSVLYACSHAGLVREGDEIFHAMVN-KYRI 539

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           EP  EHY C+VD+LGRAG++ +ALEFI+ MP EP  A+ G+LLGAC +H + ++     +
Sbjct: 540 EPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASE 599

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           RL E++P N G YV+LSN+Y+    +     VRE +K++ ++K PG + IE++   H F 
Sbjct: 600 RLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFV 659

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
             DRSH     + AK+++L+ K +E GY  +    L+DV+EE+KE +   HSEKLA+ FG
Sbjct: 660 CGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFG 719

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LI T  G  IR+IKNLR+C+DCH   KF+SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 720 LITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 179/346 (51%), Gaps = 11/346 (3%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G  +HAH +   +   +++ + L+  Y K   ++ ARK+FD+M +R+ V W  MI+   +
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                +++ +F  M+      +  T ATVL + A     ++G  I  L +K  F    YV
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            + L+ +++K   +  AR +F  + + D+VS  A+ISG++  G  E A++ FR+L V G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG- 300

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS----LIDMYSKCGSLT 312
               V+ ++++  +   +  GH   +   +  F + S  +LQ S    L  +YS+   + 
Sbjct: 301 --QRVSSSTMVGLIPVSSPFGH-LHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEID 357

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +R++FD  SE+TV +WNAM+ GY++ G+    + LF  M    +  P+ VT  ++LS C
Sbjct: 358 LARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMM-TTEFTPNPVTITSILSAC 416

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +  G    G +V H+++  K+  E  I     ++DM  + G + EA
Sbjct: 417 AQLGALSFGKSV-HQLIKSKN-LEQNIYVSTALIDMYAKCGNISEA 460



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 209/468 (44%), Gaps = 41/468 (8%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +TLL       T       HA +I+  Y+  +   T+L            AR +F  + +
Sbjct: 9   NTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPK 68

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQ 180
            ++  +  +I  +S    +  +++ +  +L++ T  P+ FT+A  +++        LG  
Sbjct: 69  PDIFLFNVLIKGFSFSPDA-SSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLGMC 124

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H+  +   F+S+++V S+L+D+Y K  R+  AR VF+ +P+RD V    +I+G  +   
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCC 184

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGL--AALGHGKQVHSHVLRFEIPSYVVLQ 298
            ++++++F+ +  +G+  +  T A+VL A++ +    +G G Q  +  L F    YV+  
Sbjct: 185 YDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL-- 242

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENK 357
             LI ++SKC  +  +R +F  + +  ++S+NA++ G+S +G     V+ F  L+    +
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 358 VKPDSVTYLAVLSG---------CSHGGMEDRGLAV--------------FHEIVDCKDG 394
           V   ++  L  +S          C  G     G  +               +EI   +  
Sbjct: 303 VSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL 362

Query: 395 F----EPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVHYNV 447
           F    E  +  +  ++    ++G    A+   + M    F P    + S+L AC     +
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGAL 422

Query: 448 DIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             G+ V Q +     E N      L ++YA  G   + +++ +L  EK
Sbjct: 423 SFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK 470



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLR----FEIPSYVVLQNSLIDMYSKCGSL 311
           MI   ++  ++L  +S      H  + H+ ++R     ++ +   L   L D+    G+ 
Sbjct: 1   MIRGDISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDV----GAT 56

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
            ++R +F ++ +  +  +N ++ G+S        +  +  + +   + PD+ TY   +S 
Sbjct: 57  RHARALFFSVPKPDIFLFNVLIKGFS-FSPDASSISFYTHLLKNTTLSPDNFTYAFAISA 115

Query: 372 CSHGGMEDRGLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
                 ++ G+ +  H +VD   GF+  +     +VD+  +  RV  A +    MP
Sbjct: 116 SPD---DNLGMCLHAHAVVD---GFDSNLFVASALVDLYCKFSRVAYARKVFDKMP 165


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 356/627 (56%), Gaps = 75/627 (11%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFY-----NKCECLSDARKMFDEMRERNVVSWTAMIS 132
           ++ HA +++T +    Y+   L+  Y     N+      + ++FD +R+ NV  W  MI 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-- 190
              +    F+A+ L+  M+ + + PN++T+  VL +C+ +     G Q+H+ ++K     
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 191 ESHIYVGS------------------------------SLLDMYAKAGRIHEARGVFECL 220
           + HI   +                              +++D Y + G +  AR +FE +
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 221 P--------------------------------ERDVVSCTAIISGYAQLGLDEEAIELF 248
           P                                ERD +S +A+I GY Q G   EA+E+F
Sbjct: 232 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 291

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
            ++Q E +        SVL+A + L AL  G+ +H++  R  I    VL  SL+DMY+KC
Sbjct: 292 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 351

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  +  VF+ MS + V SWNAM+ G + HG   + ++LF+ M     + P+ +T++ V
Sbjct: 352 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DIYPNEITFVGV 407

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L+ C+HGG+  +GL +F+ +   + G EP+IEHYGC+VD+LGRAG + EA + + ++P E
Sbjct: 408 LNACAHGGLVQKGLTIFNSMRK-EYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 466

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
           PT A+ G+LLGACR H NV++GE VG+ L+E+EP+N+G Y +LSN+YA AGRWE+V  VR
Sbjct: 467 PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVR 526

Query: 489 ELMKEKAVTKDPGRSWIELDQ-ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           +LMKE+ +   PG S I+L +  +H F   D SHP  +++   + ++  + +  GY PD 
Sbjct: 527 KLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDP 586

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           S VL+D+DEE+KE  +  HSEKLA+ FGLI T  G  IR++KNLR+C DCH+  K +S+V
Sbjct: 587 SQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQV 646

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           Y R++ +RD+ R+HH   G CSC D+W
Sbjct: 647 YNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC N   L  G+ +H +  +   +    L T L+  Y KC  +  A ++F++M  +
Sbjct: 308 SVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK 367

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
            V SW AMI   +    + +A++LF +M   D  PNE TF  VL +CA     + G  I 
Sbjct: 368 EVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIF 424

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +S+  +   E  I     ++D+  +AG + EA  V   +P
Sbjct: 425 NSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 464


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 344/623 (55%), Gaps = 39/623 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++       ++L AC   + L+ G+ +H   +K      V++ T L+  Y  C 
Sbjct: 333 EMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCL 392

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+ +A+ +FD M  RNVV+W ++ S Y       + LN+F  M+ +  +P+  T  ++L 
Sbjct: 393 CVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILH 452

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+     + GK IH   ++      ++V ++LL +YAK   + EA+ VF+ +P R+V S
Sbjct: 453 ACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVAS 512

Query: 228 CTAIISGY-------------AQLGLDE----------------------EAIELFRKLQ 252
              I++ Y             +Q+  DE                      EA+E+FRK+Q
Sbjct: 513 WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ 572

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G   +  T  S+L A S    L  GK++H +V R      +   N+L+DMY+KCG L+
Sbjct: 573 TMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLS 632

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            SR VFD M  + V SWN M+     HG G+E + LF  M   + VKPDS T+  VLS C
Sbjct: 633 LSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLL-SMVKPDSATFTCVLSAC 691

Query: 373 SHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431
           SH  + + G+ +F+ +   +D   EPE EHY CVVD+  RAG + EA  FI+ MP EPTA
Sbjct: 692 SHSMLVEEGVQIFNSMS--RDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTA 749

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
               + L  CRV+ NV++ +   ++L EI+P  + NYV L N+  +A  W + +++R+LM
Sbjct: 750 IAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLM 809

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
           KE+ +TK PG SW  +   +HTF A D+S+   +++   + +L  K K AGY PD   VL
Sbjct: 810 KERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVL 869

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           +D+D+E+K + L  HSEKLA+ FG++     + IRV KNLRIC DCHN  K++S V G  
Sbjct: 870 HDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVT 929

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           + +RD  RFHH   G CSC D+W
Sbjct: 930 IVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 184/351 (52%), Gaps = 3/351 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++        +L+AC + + L+ G+ +H   +K      V++   L+  Y  C 
Sbjct: 232 EMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCL 291

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+ +A+ +FD M  RNV++W ++ S Y       + LN+F  M  +  +P+    +++L 
Sbjct: 292 CVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILP 351

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+     + GK IH   +K      ++V ++L+++YA    + EA+ VF+ +P R+VV+
Sbjct: 352 ACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVT 411

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             ++ S Y   G  ++ + +FR++ + G+  + VT  S+L A S L  L  GK +H   +
Sbjct: 412 WNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAV 471

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R  +   V + N+L+ +Y+KC  +  ++ VFD +  R V SWN +L  Y  +    + + 
Sbjct: 472 RHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLY 531

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +F+ M  + +VK D +T+  V+ GC      +  + +F ++     GF+P+
Sbjct: 532 MFSQMNRD-EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTM--GFKPD 579



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 180/333 (54%), Gaps = 6/333 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C + + L+ G+ +H  +++      V++ +  + FY KC C+ +A+ +FD M  R
Sbjct: 146 SILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHR 205

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VV+W ++ S Y       + LN+F  M+    +P+  T + +L++C+     + GK IH
Sbjct: 206 DVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIH 265

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +K     +++V ++L+++Y     + EA+ VF+ +P R+V++  ++ S Y   G  +
Sbjct: 266 GFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQ 325

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           + + +FR++ + G+  + +  +S+L A S L  L  GK +H   ++  +   V +  +L+
Sbjct: 326 KGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALV 385

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           ++Y+ C  +  ++ VFD M  R V++WN++   Y   G  ++ + +F  M   N VKPD 
Sbjct: 386 NLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMV-LNGVKPDL 444

Query: 363 VTYLAVLSGCS-----HGGMEDRGLAVFHEIVD 390
           VT L++L  CS       G    G AV H +V+
Sbjct: 445 VTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE 477



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVS 126
           AC   R     ++ H    +      V +    I  Y KC+C+  AR++FD++  R+VV+
Sbjct: 49  ACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVT 108

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W ++ + Y       + LN+F +M  +  + N  T +++L  C+     + GK+IH  ++
Sbjct: 109 WNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVV 168

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +      ++V S+ ++ YAK   + EA+ VF+ +P RDVV+  ++ S Y   G  ++ + 
Sbjct: 169 RHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLN 228

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           +FR++ ++G+  + VT + +L+A S L  L  GK +H   L+  +   V + N+L+++Y 
Sbjct: 229 VFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYE 288

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
            C  +  ++ VFD M  R VI+WN++   Y   G  ++ + +F  M   N VKPD +   
Sbjct: 289 SCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM-GLNGVKPDPMAMS 347

Query: 367 AVLSGCSH-----GGMEDRGLAVFHEIVD 390
           ++L  CS       G    G AV H +V+
Sbjct: 348 SILPACSQLKDLKSGKTIHGFAVKHGMVE 376



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           EA+ ++        +P++  F  V  +CA +      KQ H    +    S + +G++ +
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
             Y K   +  AR VF+ L  RDVV+  ++ + Y   G  ++ + +FRK+ +  + +N +
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T +S+L   S L  L  GK++H  V+R  +   V + ++ ++ Y+KC  +  ++ VFD M
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----HGG 376
             R V++WN++   Y   G  ++ + +F  M  +  VKPD VT   +LS CS       G
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDG-VKPDPVTVSCILSACSDLQDLKSG 261

Query: 377 MEDRGLAVFHEIVD 390
               G A+ H +V+
Sbjct: 262 KAIHGFALKHGMVE 275



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           GL  EAI+++   +  G+  +   + +V  A +        KQ H    R  + S V + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+ I  Y KC  +  +RRVFD++  R V++WN++   Y   G  ++ + +F  M   NKV
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM-GLNKV 137

Query: 359 KPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVD 390
           K + +T  ++L GCS       G E  G  V H +V+
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVE 174


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 352/604 (58%), Gaps = 39/604 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRER 122
           L++C   +TL+   ++HA  I T      ++ +R++ F   +    +  AR +F  +R+ 
Sbjct: 42  LSSC---KTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQI 181
           ++     +I AY+   +  +A+  +  M  S    P+  TF  +L +C+      LG+ I
Sbjct: 99  DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAI 158

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA---------------------------- 213
           HS + K  + S + V + L+ MYA  G I  A                            
Sbjct: 159 HSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVF 218

Query: 214 ---RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
              R +FE +P+RDVVS + +I+GY Q    +E + LF+ +  E +  N     + L+A 
Sbjct: 219 KSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSAC 278

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + L A+  G+ +  ++ R  +   V L  +LIDMYSKCGS+  +  VF  M E+ V++W+
Sbjct: 279 AHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWS 338

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+ G + +G G++ + LF+ M E   VKP+ VT++ +L+ CSH  + D G + FH +  
Sbjct: 339 AMINGLAINGQGKDALNLFSQM-EMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTS 397

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              G +P   H+ C+VD+ GRAG + +A   IK+MPF+P +AI G+LL ACR+H + ++G
Sbjct: 398 IY-GLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELG 456

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E VG+RL+E++P + G YV+LSN+YA+ GRW+ V  +R +M+E+ V+K PG S+I+L   
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDT 516

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +H F A D SHP  E + AK+ ++S + K AGY PD   VL D+DEE+KE  L  HSEKL
Sbjct: 517 IHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKL 576

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI T  G  IR+ KNLR+C DCH+  K +SK+Y R++ +RD+ RFHH  +G+CSC
Sbjct: 577 AIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSC 636

Query: 631 GDYW 634
            D+W
Sbjct: 637 MDFW 640



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 170/364 (46%), Gaps = 48/364 (13%)

Query: 25  SFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84
           +F PNP +     S  ++T++ +    +        +  LL AC    +LR G+ +H+H+
Sbjct: 111 AFSPNPIDAVVFYS--EMTESSVVFPDV------HTFPLLLKACSEIPSLRLGEAIHSHV 162

Query: 85  IKTCYRPPVYLRTRLIVFYNKC--------------EC-----------------LSDAR 113
            K  +   V +   L+  Y  C              EC                    AR
Sbjct: 163 FKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSAR 222

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           +MF+ M +R+VVSW+ MI+ Y Q++   E L LF  M+    EPNE      L++CA   
Sbjct: 223 RMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLG 282

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             E G+ I   + + N    + +G++L+DMY+K G +  A  VF  + E++V++ +A+I+
Sbjct: 283 AMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMIN 342

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHVLRFEIP 292
           G A  G  ++A+ LF +++++G+  N VT+  +L A S    +  G    HS    + + 
Sbjct: 343 GLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLK 402

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHG-------MGRE 344
                   ++D+Y + G L  ++ V  +M  +   + W A+L     HG       +G+ 
Sbjct: 403 PNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKR 462

Query: 345 VVEL 348
           ++EL
Sbjct: 463 LLEL 466


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 348/617 (56%), Gaps = 51/617 (8%)

Query: 28  PNP------QNLKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78
           PNP      Q ++    NG    A+     M  LG+      Y  +L AC     +  G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
            +H+H         V++ T L+ FY KC  L +A+++F  M  R+VV+W AMI+  S   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
              +A+ L ++M      PN  T   VL +C                     +  +Y   
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTC---------------------QCLLY--- 225

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
                         AR +F+ +  R+ VS +A+I GY      +EA+++FR +Q+ G+  
Sbjct: 226 --------------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDP 271

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           +  T   VL A S LAAL HG   H +++     +  ++ N+LIDMYSKCG ++++R VF
Sbjct: 272 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 331

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
           + M    ++SWNAM++GY  HG+G E + LF+ +     +KPD +T++ +LS CSH G+ 
Sbjct: 332 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG-LKPDDITFICLLSSCSHSGLV 390

Query: 379 DRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
             G   F  +   +D    P +EH  C+VD+LGRAG + EA  FI+NMPFEP   I  +L
Sbjct: 391 MEGRLWFDAM--SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           L ACR+H N+++GE V +++  + PE+ GN+V+LSN+Y++AGRW+D   +R   K+  + 
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K PG SWIE++ I+H F   D+SH    +++ K+++L V+ K  GY  + S V  DV+EE
Sbjct: 509 KIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE 568

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE++LL HSEKLA+ FG++    G PI V KNLR+C DCH   KF++ +  R++++RD 
Sbjct: 569 EKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDA 628

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH   GTC+CGD+W
Sbjct: 629 NRFHHFKNGTCNCGDFW 645



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 176/375 (46%), Gaps = 44/375 (11%)

Query: 54  LEMRFE---EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           + +RFE    Y  LL AC+  ++L   +++H H +K        +  +L   Y  C  + 
Sbjct: 1   MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            AR++FDE+   +V+ W  +I AY+       A++L+  ML     PN++T+  VL +C+
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
           G    E G +IHS       ES ++V ++L+D YAK G + EA+ +F  +  RDVV+  A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+G +  GL ++A++L  ++Q EG+  N  T   VL                       
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT--------------------- 219

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
                            C  L Y+R++FD M  R  +SW+AM+ GY      +E +++F 
Sbjct: 220 -----------------CQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFR 262

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
           +M + + + PD  T L VL  CSH      G      ++    GF  +      ++DM  
Sbjct: 263 MM-QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI--VRGFATDTLICNALIDMYS 319

Query: 411 RAGRVGEALEFIKNM 425
           + G++  A E    M
Sbjct: 320 KCGKISFAREVFNRM 334



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 17/207 (8%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
            Y  +L A     +L   K++H H L+    +   + + L  +Y  C  +  +RR+FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
              +VI WN ++  Y+ +G     ++L++ M     V+P+  TY  VL  CS       G
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACS-------G 121

Query: 382 LAVFHEIVDCKD-----GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           L    + V+        G E ++     +VD   + G + EA     +M      A   +
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNA 180

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPE 463
           ++  C ++   D      Q +M+++ E
Sbjct: 181 MIAGCSLYGLCDDAV---QLIMQMQEE 204


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 322/526 (61%), Gaps = 3/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DA K+F +M  +NV+SWT MI    Q   S EALNLF  MLR   +    TF  V+T+
Sbjct: 175 VDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITA 234

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA A  F +G Q+H  IIKS F    YV +SL+ +YA   R  ++R VF  +    V   
Sbjct: 235 CANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVW 294

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA++SGY+     E+A+ +F ++    ++ N  T+AS L + S L  L  GK++H   ++
Sbjct: 295 TALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVK 354

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + +   + NSL+ MYS  G++  +  VF  + +++++SWN+++VG ++HG G+    +
Sbjct: 355 LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVI 414

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M   NK +PD +T+  +LS CSH G   +G  +F+ I    +  + +I+HY C+VD+
Sbjct: 415 FGQMIRLNK-EPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDI 473

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR G + EA + I++M  +P   +  +LL ACR+H +VD GE     +  ++ +++  Y
Sbjct: 474 LGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAY 533

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YASAGRW  V+++R  MK+K + K PG SW+ +    H F + DR H +R  + 
Sbjct: 534 VLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPHCLR--IF 591

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            K++ L  K KE GYVPD    L+DV++EQKE++L  HSE+LA+ FGLI T EG+ + V+
Sbjct: 592 EKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVM 651

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S+V G K+ LRD  RFHH   G CSCGDYW
Sbjct: 652 KNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 37/323 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++ AC N      G +VH  +IK+ +    Y+   LI  Y  C+   D+RK+F EM 
Sbjct: 228 FTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMV 287

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              V  WTA++S YS      +ALN+F  M+R+   PN+ TFA+ L SC+     + GK+
Sbjct: 288 HEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKE 347

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH + +K    +  +VG+SL+ MY+ +G +++A  VF  + ++ +VS  +II G AQ G 
Sbjct: 348 IHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGR 407

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQ 298
            + A  +F ++       + +T+  +L+A S    L  G+++  ++      I   +   
Sbjct: 408 GKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHY 467

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
             ++D+  +CG L  + ++ ++M                                    V
Sbjct: 468 TCMVDILGRCGELKEAEKLIESMV-----------------------------------V 492

Query: 359 KPDSVTYLAVLSGCSHGGMEDRG 381
           KP+ + +LA+LS C      DRG
Sbjct: 493 KPNEMVWLALLSACRMHSDVDRG 515



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 165/356 (46%), Gaps = 16/356 (4%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V L T++I  Y +   L DA  +FDEM  R+VVSW +MIS   +      A+ +F  M
Sbjct: 64  PHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEM 123

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
                E +  ++  ++  C   F F +  Q   L  +   +  I   ++++  Y + G++
Sbjct: 124 ----PERSVVSWTAMVNGC---FRFGMVDQAERLFCQMPVKD-IAAWNAMVHGYLQFGKV 175

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +A  +F+ +P ++V+S T +I G  Q     EA+ LF+ +    + S   T+  V+TA 
Sbjct: 176 DDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITAC 235

Query: 271 SGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           +   A   G QVH  +++  F    YV    SLI +Y+ C     SR+VF  M    V  
Sbjct: 236 ANAPAFHMGTQVHGFIIKSGFLYEEYVTA--SLITLYANCKRTEDSRKVFGEMVHEKVAV 293

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W A+L GYS +    + + +F+ M   N + P+  T+ + L+ CS  G  D G  +    
Sbjct: 294 WTALLSGYSLNRKHEDALNVFSEMI-RNSILPNQSTFASGLNSCSALGTLDWGKEIHG-- 350

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           V  K G          +V M   +G V +A+     + F+ +     S++  C  H
Sbjct: 351 VAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQH 405



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 67/326 (20%)

Query: 178 GKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           GK   S  +   F++  + + + LL+      R+ EAR VF+ +P   V   T +ISGY 
Sbjct: 23  GKSFRSYSVTVEFQNREVLICNHLLNR-----RLDEAREVFDQVPSPHVSLYTKMISGYT 77

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     +A+ LF ++ +  ++S                                      
Sbjct: 78  RSNRLVDALNLFDEMPLRDVVS-------------------------------------- 99

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             NS+I    +CG +  + ++FD M ER+V+SW AM+ G  + GM  +   LF  M    
Sbjct: 100 -WNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQM---- 154

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            VK D   + A++ G    G  D  L +F ++          +  +  ++  L +  R G
Sbjct: 155 PVK-DIAAWNAMVHGYLQFGKVDDALKLFKQMP------RKNVISWTTMICGLDQNERSG 207

Query: 417 EALEFIKNM---PFEPTAAILGSLLGAC----RVHYNVDIGEFVGQRLMEIEPENAGNYV 469
           EAL   KNM     + T+     ++ AC      H    +  F+ +     E     + +
Sbjct: 208 EALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLI 267

Query: 470 ILSNLYASAGRWEDVTRV-RELMKEK 494
               LYA+  R ED  +V  E++ EK
Sbjct: 268 ---TLYANCKRTEDSRKVFGEMVHEK 290


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 339/579 (58%), Gaps = 12/579 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP---PVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +LL        L  G  +HA+ ++ C       V + T L+  Y KC+ L  A ++F  M
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS----CAGAFGF 175
             RN V+W+A+I  +       EA NLF  ML    E   F  AT + S    CA     
Sbjct: 267 PVRNDVTWSALIGGFVLCDRMTEAFNLFKDML---VEGLCFLSATSVASALRVCASLADL 323

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            +G Q+H+LI KS   + +   +SLL MYAKAG I+EA   F+ +  +D +S  A++SG 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G  EEA  +F+K+Q   M  +  T  S++ A S LAAL HGK  H  V+   +    
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + NSLIDMY+KCG +  SR+VFD M  R V+SWN M+ GY  HG+G+E   LF  M+ +
Sbjct: 444 SICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQ 503

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
               PD VT++ +++ CSH G+   G   F  +   K G  P +EHY C+VD+L R G +
Sbjct: 504 G-FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH-KYGILPRMEHYICMVDLLARGGLL 561

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA +FI++MP +    + G+LLGACR+H N+D+G+ V + + ++ PE  GN+V+LSN++
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIF 621

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           ++AGR+++   VR + K K   K PG SWIE++  LH F   D+SHP   ++  ++  + 
Sbjct: 622 SAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIM 681

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           V  K+ GY  D S VL D++EE+KEK LL HSEKLA+ FG++   E   I V KNLR+C 
Sbjct: 682 VDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCG 741

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K+++ V  R + +RD NRFHH   G CSCG++W
Sbjct: 742 DCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 166/337 (49%), Gaps = 7/337 (2%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ AR++FD +   +  ++ A+I AYS       A++L+  MLR    PN++TF  VL +
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+       G+ IH+    +   + ++V ++L+D+Y +  R   AR VF  +P RDVV+ 
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            A+++GYA  G+   AI     +Q  G +  N  T  S+L  L+   AL  G  +H++ L
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 288 RF---EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           R    +    V++  +L+DMY+KC  L Y+ RVF  M  R  ++W+A++ G+       E
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
              LF  M  E      + +  + L  C+   + D  +      +  K G   ++     
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCA--SLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
           ++ M  +AG + EA  F   +  + T +  G+LL  C
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 178/368 (48%), Gaps = 8/368 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     LR G+ +HAH         +++ T LI  Y +C     AR +F +M  R+
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRD 165

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           VV+W AM++ Y+       A+   + M       PN  T  ++L   A       G  IH
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIH 225

Query: 183 SLIIKSNFESH---IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +  +++  E +   + +G++LLDMYAK  ++  A  VF  +P R+ V+ +A+I G+    
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 240 LDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              EA  LF+ + VEG+   +  + AS L   + LA L  G Q+H+ + +  I + +   
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTAS 345

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+ MY+K G +  +   FD ++ +  IS+ A+L G  ++G   E   +F  M+  N +
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN-M 404

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +PD  T ++++  CSH      G      ++    G   E      ++DM  + G++  +
Sbjct: 405 EPDIATMVSLIPACSHLAALQHGKCSHGSVI--IRGLALETSICNSLIDMYAKCGKIDLS 462

Query: 419 LEFIKNMP 426
            +    MP
Sbjct: 463 RQVFDKMP 470



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 1/227 (0%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           L+ +   G++  AR VF+ +P  D  +  A+I  Y+ LG    AI+L+R +    +  N 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T+  VL A S L  L  G+ +H+H     + + + +  +LID+Y +C     +R VF  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  R V++WNAML GY+ HGM    +     M++   ++P++ T +++L   +  G   +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 381 GLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           G ++  + +  C +  E ++     ++DM  +  ++  A      MP
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 344/615 (55%), Gaps = 54/615 (8%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN-KCECLSDARKMFDEMRERNVVSWTAM 130
           +T R  +++HA  IKT           +I F       +  AR +F +M E N   W  +
Sbjct: 30  KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTI 89

Query: 131 ISAYSQKAHSF---EALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           +   ++        EAL LF  ML     +PN FTF +VL +CA A     GKQIH LI+
Sbjct: 90  LRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIV 149

Query: 187 KSNFESHIYVGSSLLDMYA----------------------------------------- 205
           K  F    +V S+L+ MY                                          
Sbjct: 150 KFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNI 209

Query: 206 ------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                 + G I  A+ +F+ +P+R VVS   +ISGYAQ G   EAI LF+++Q   +  N
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPN 269

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           YVT  SVL A++ + AL  GK +H +  + +I    VL ++L+DMYSKCGS+  + +VF+
Sbjct: 270 YVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFE 329

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            + +R  I+W+A++  ++ HG   + +  F+LM +   V P+ V Y+ +LS CSH G+ +
Sbjct: 330 TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG-VTPNDVAYIGILSACSHAGLVE 388

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            G + F  +V    G +P IEHYGC+VD+LGRAG + EA E I+NMP EP   I  +LLG
Sbjct: 389 EGRSFFSHMVKVV-GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           AC++H N+ +GE V + LME+ P ++G+YV LSNLYAS G WE V RVR  MK   + KD
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507

Query: 500 PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQK 559
           PG SWIE+  I+H F   D SH   +E+ A + ++S+K +  GY P+   V  + DE+++
Sbjct: 508 PGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQER 567

Query: 560 EKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNR 619
            + L  HSEK+A+ FGLI T    P++++KNLRIC DCH   K +S +Y R++ +RD+ R
Sbjct: 568 ARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKR 627

Query: 620 FHHIVEGTCSCGDYW 634
           FH    G+CSC DYW
Sbjct: 628 FHQFEHGSCSCMDYW 642



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 166/361 (45%), Gaps = 59/361 (16%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD--------- 111
           + ++L AC     LR G+++H  ++K  +    ++ + L+  Y  C  + D         
Sbjct: 125 FPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184

Query: 112 --------------------------------------ARKMFDEMRERNVVSWTAMISA 133
                                                 A+ +FDEM +R+VVSW  MIS 
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISG 244

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q  H  EA+NLF  M  S+ +PN  T  +VL + A     ELGK IH    K+  E  
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEID 304

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
             +GS+L+DMY+K G I EA  VFE LP+R+ ++ +AII  +A  G  E+AI  F  +  
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLT 312
            G+  N V Y  +L+A S    +  G+   SH+++   +   +     ++D+  + G L 
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424

Query: 313 YSRRVFDNMS-ERTVISWNAMLVGYSKH---GMGREVVELFNLMREENKVKP-DSVTYLA 367
            +  +  NM  E   + W A+L     H    MG  V E   LM    ++ P DS +Y+A
Sbjct: 425 EAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE--TLM----ELAPHDSGSYVA 478

Query: 368 V 368
           +
Sbjct: 479 L 479



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +A+    EM +  ++  +    ++L A      L  G+ +H +  K        L
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVL 307

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y+KC  + +A ++F+ + +RN ++W+A+I A++    + +A+  F  M ++  
Sbjct: 308 GSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLDMYAKAGRIHEAR 214
            PN+  +  +L++C+ A   E G+   S ++K    +  I     ++D+  +AG + EA 
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 215 GVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +   +P E D V   A++     +  L + E   E   +L       +YV  +++  +L
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDS-GSYVALSNLYASL 486

Query: 271 SGLAALG 277
               A+ 
Sbjct: 487 GNWEAVA 493


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 351/606 (57%), Gaps = 40/606 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA--RKMFDEMRER 122
           L+ C+N   ++   ++H H+++       Y+ T+LI    K     D   R++ + ++ R
Sbjct: 57  LDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFR 113

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N   WTA+I  Y+ +    EA+ ++  M + +  P  FTF+ +L +C       LG+Q H
Sbjct: 114 NPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFH 173

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------------- 229
           +   +      +YVG++++DMY K G I  AR VF+ +PERDV+S T             
Sbjct: 174 AQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNME 233

Query: 230 ------------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
                             A+++G+AQ    +EA+E F +++  G+ ++ VT A  ++A +
Sbjct: 234 SAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACA 293

Query: 272 GLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            L A  +  +      +  +    +VV+ ++LIDMYSKCG++  +  VF +M+ + V S+
Sbjct: 294 QLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSY 353

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           ++M++G + HG  +E ++LF+ M  +  +KP++VT++  L+ CSH G+ D+G  VF  + 
Sbjct: 354 SSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMY 413

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
               G EP  +HY C+VD+LGRAGR+ EALE IK M  EP   + G+LLGACR+H N DI
Sbjct: 414 QTF-GVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDI 472

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW-IELD 508
            E   + L E+EP+  GNY++LSN+Y+SAG W  V  VR+L+KEK + K P  SW ++ +
Sbjct: 473 AEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKN 532

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F   + +HPM +++  K+++L  +    GY PD+S V YDV +  K  +L+ H+E
Sbjct: 533 GQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTE 592

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLAL F L+ T     I+++KNLR+C DCH F +  S+V GR + +RD  RFHH   G C
Sbjct: 593 KLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGAC 652

Query: 629 SCGDYW 634
           SCGD+W
Sbjct: 653 SCGDFW 658



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--YSRRVFDNM 321
           +S+++ L     L   KQ+H HVLR  +     +   LI   +K G     Y RRV + +
Sbjct: 51  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPV 110

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             R    W A++ GY+  G   E + ++  MR+E ++ P S T+ A+L  C  G M D  
Sbjct: 111 QFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKE-EITPVSFTFSALLKAC--GSMGDLN 167

Query: 382 LA-VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           L   FH       GF   +     ++DM  + G +  A +    MP
Sbjct: 168 LGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCGSIVCARKVFDEMP 212


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 350/571 (61%), Gaps = 3/571 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL +    R++  G ++H +++K+       +   LI FY+K +   D+R+ F++  +++
Sbjct: 21  LLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKS 80

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             +W+++IS ++Q    + +L    +M+     P++    +   SC      ++GK +H 
Sbjct: 81  ATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHC 140

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L +K+ +++ ++VGSSL+DMYAK G I  AR +F+ +P R+VV+ + ++ GYAQ+G +EE
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEE 200

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF++   E +  N  ++++V++  +    L  G+Q+    ++    S   + +SL+ 
Sbjct: 201 ALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVS 260

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           +YSKCG L  + +VFD +  R +  WNAML   ++H   ++V+ELF  M+    +KP+ +
Sbjct: 261 LYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSG-MKPNFI 319

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+L VL+ CSH G+ D G   F  + + +   EP  +HY  +VDMLGRAG++ EALE + 
Sbjct: 320 TFLNVLNACSHAGLVDEGKYYFDLMKESR--IEPTDKHYASLVDMLGRAGKLEEALEIVT 377

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           NMP +PT ++ G+LL +C +H N ++  F   ++ E+ P ++G ++ LSN YA+ GR+ED
Sbjct: 378 NMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFED 437

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
             + R+L++++   K+ G SW+E    +HTF A +R H   +E+  K+ +L  + ++AGY
Sbjct: 438 AAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGY 497

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           V D S VL +VD ++K + +  HSE+LA+ FGLI  P   PIRV+KNLR+C DCHN  KF
Sbjct: 498 VADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKF 557

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +S    R + +RD NRFH   +G CSC DYW
Sbjct: 558 MSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 88/161 (54%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+++ C N   L  G+++    IK+ +    ++ + L+  Y+KC  L  A ++FDE+ 
Sbjct: 220 FSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVP 279

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RN+  W AM+ A +Q +H+ + + LF RM  S  +PN  TF  VL +C+ A   + GK 
Sbjct: 280 MRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKY 339

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              L+ +S  E      +SL+DM  +AG++ EA  +   +P
Sbjct: 340 YFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMP 380



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 88/193 (45%), Gaps = 13/193 (6%)

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           NY     +L + +   ++  G Q+H ++++  +    ++ N+LI+ YSK      SRR F
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLM-----REENKVKPDSVTYLAVLSGCS 373
           ++  +++  +W++++  ++++ +    +E    M     R ++ V P +     +LS C 
Sbjct: 74  EDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRC- 132

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                D G +V    +  K G++ ++     +VDM  + G +  A +    MP       
Sbjct: 133 -----DIGKSV--HCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTW 185

Query: 434 LGSLLGACRVHYN 446
            G + G  ++  N
Sbjct: 186 SGMMYGYAQMGEN 198


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 349/575 (60%), Gaps = 10/575 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC---ECLSDARKMFDEMR 120
           L++ C    +LR   ++ A+ IK+ +   V    +LI F  +      +S AR +F+ M 
Sbjct: 35  LISKC---NSLRELMQIQAYAIKS-HIEDVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E ++V + +M   YS+  +  E  +LF+ +L     P+ +TF ++L +CA A   E G+Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H L +K   + ++YV  +L++MY +   +  AR VF+ + E  VV   A+I+GYA+   
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LFR++Q + +  N +T  SVL++ + L +L  GK +H +  +     YV +  +
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDM++KCGSL  +  +F+ M  +   +W+AM+V Y+ HG   + + +F  MR EN V+P
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN-VQP 329

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D +T+L +L+ CSH G  + G   F ++V  K G  P I+HYG +VD+L  AG + +A E
Sbjct: 330 DEITFLGLLNACSHTGRVEEGRKYFSQMVS-KFGIVPSIKHYGSMVDLLSXAGNLEDAYE 388

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI  +P  PT  +   LL AC  H N+D+ E V +R+ E++  + G+YVILSNLYA   +
Sbjct: 389 FIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKK 448

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE V  +R++MK++   K PG S IE++ ++H F + D       +L   + ++  + K 
Sbjct: 449 WEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKL 508

Query: 541 AGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
           +GYVPD S V++ ++++++KE  L  HSEKLA+TFGL+ TP G  IRV+KNLR+C DCHN
Sbjct: 509 SGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHN 568

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            AK +S ++GRKV  RD  RFHH  +G CSCGD+W
Sbjct: 569 AAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 150/282 (53%), Gaps = 2/282 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +LL AC   + L  G+++H   +K      VY+   LI  Y +CE +  AR +FD + 
Sbjct: 132 FPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIV 191

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E  VV + AMI+ Y+++    EAL+LF  M     +PNE T  +VL+SCA     +LGK 
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH    K +F  ++ V ++L+DM+AK G + +A  +FE +  +D  + +A+I  YA  G 
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQN 299
            E+++ +F +++ E +  + +T+  +L A S    +  G++  S ++ +F I   +    
Sbjct: 312 AEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYG 371

Query: 300 SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           S++D+ S  G+L  +    D +    T + W  +L   S H 
Sbjct: 372 SMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 339/579 (58%), Gaps = 12/579 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP---PVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +LL        L  G  +HA+ ++ C       V + T L+  Y KC+ L  A ++F  M
Sbjct: 207 SLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGM 266

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS----CAGAFGF 175
             RN V+W+A+I  +       EA NLF  ML    E   F  AT + S    CA     
Sbjct: 267 PVRNDVTWSALIGGFVLCDRMTEAFNLFKDML---VEGLCFLSATSVASALRVCASLADL 323

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            +G Q+H+LI KS   + +   +SLL MYAKAG I+EA   F+ +  +D +S  A++SG 
Sbjct: 324 HMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC 383

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G  EEA  +F+K+Q   M  +  T  S++ A S LAAL HGK  H  V+   +    
Sbjct: 384 VQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET 443

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + NSLIDMY+KCG +  SR+VFD M  R V+SWN M+ GY  HG+G+E   LF  M+ +
Sbjct: 444 SICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQ 503

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
               PD VT++ +++ CSH G+   G   F  +   K G  P +EHY C+VD+L R G +
Sbjct: 504 G-FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH-KYGILPRMEHYICMVDLLARGGLL 561

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA +FI++MP +    + G+LLGACR+H N+D+G+ V + + ++ PE  GN+V+LSN++
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIF 621

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           ++AGR+++   VR + K K   K PG SWIE++  LH F   D+SHP   ++  ++  + 
Sbjct: 622 SAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIM 681

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
           V  K+ GY  D S VL D++EE+KEK LL HSEKLA+ FG++   E   I V KNLR+C 
Sbjct: 682 VDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCG 741

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K+++ V  R + +RD NRFHH   G CSCG++W
Sbjct: 742 DCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 166/337 (49%), Gaps = 7/337 (2%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ AR++FD +   +  ++ A+I AYS       A++L+  MLR    PN++TF  VL +
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+       G+ IH+    +   + ++V ++L+D+Y +  R   AR VF  +P RDVV+ 
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            A+++GYA  G+   AI     +Q  G +  N  T  S+L  L+   AL  G  +H++ L
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 288 RF---EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           R    +    V++  +L+DMY+KC  L Y+ RVF  M  R  ++W+A++ G+       E
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
              LF  M  E      + +  + L  C+   + D  +      +  K G   ++     
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCA--SLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
           ++ M  +AG + EA  F   +  + T +  G+LL  C
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 178/368 (48%), Gaps = 8/368 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     LR G+ +HAH         +++ T LI  Y +C     AR +F +M  R+
Sbjct: 106 VLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRD 165

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           VV+W AM++ Y+       A+   + M       PN  T  ++L   A       G  IH
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIH 225

Query: 183 SLIIKSNFESH---IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +  +++  E +   + +G++LLDMYAK  ++  A  VF  +P R+ V+ +A+I G+    
Sbjct: 226 AYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCD 285

Query: 240 LDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              EA  LF+ + VEG+   +  + AS L   + LA L  G Q+H+ + +  I + +   
Sbjct: 286 RMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTAS 345

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+ MY+K G +  +   FD ++ +  IS+ A+L G  ++G   E   +F  M+  N +
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACN-M 404

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +PD  T ++++  CSH      G      ++    G   E      ++DM  + G++  +
Sbjct: 405 EPDIATMVSLIPACSHLAALQHGKCSHGSVI--IRGLALETSICNSLIDMYAKCGKIDLS 462

Query: 419 LEFIKNMP 426
            +    MP
Sbjct: 463 RQVFDKMP 470



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 1/227 (0%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           L+ +   G++  AR VF+ +P  D  +  A+I  Y+ LG    AI+L+R +    +  N 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T+  VL A S L  L  G+ +H+H     + + + +  +LID+Y +C     +R VF  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  R V++WNAML GY+ HGM    +     M++   ++P++ T +++L   +  G   +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 381 GLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           G ++  + +  C +  E ++     ++DM  +  ++  A      MP
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/637 (33%), Positives = 351/637 (55%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   ++M   G+      Y + L AC    +L  G+++H  +I+   
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               Y+ + ++  Y KC C  +A+++F  +R+RN VSWT +I  + Q     E++ LF +
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG Q+HSL +KS     + V +SL+ MYAK G 
Sbjct: 383 MRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGN 442

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  +F  + ERD+VS T +I+ Y+Q+G   +A E F  +    +I+           
Sbjct: 443 LQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQH 502

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + + A   G Q+  H ++  +     +
Sbjct: 503 GAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSV 562

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I MYSKCG ++ +R+ FD +S + ++SWNAM+ GYS+HGMG++ +E+F+ +  +  
Sbjct: 563 VNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKG- 621

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+ + G   F +++       P +EH+ C+VD+LGRAG + E
Sbjct: 622 AKPDYISYVAVLSGCSHSGLVEEGKFYF-DMMKRDHNISPGLEHFSCMVDLLGRAGHLIE 680

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A   I  MP +PTA + G+LL AC+ H N D+ E   + L +++   +G Y++L+ +YA 
Sbjct: 681 AKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYAD 740

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  +VR+LM++K + K PG SW+E++  +H F A D SHP    +  K+ +L  K
Sbjct: 741 AGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEK 800

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV             +  +  + HSEKLA+ FG++  P   PI ++KNLRIC DC
Sbjct: 801 IAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDC 849

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V  R+  +RD  RFHH   G+CSC DYW
Sbjct: 850 HTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 204/436 (46%), Gaps = 35/436 (8%)

Query: 16  FTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDT--LLNACVNQRT 73
           F   + T  S P        + S G L    + +  LGL  +F+  D   +  A V+   
Sbjct: 146 FVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLV 205

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
             G     +        P +  R  ++V Y K   +  A ++F  M ER+VVSW  +ISA
Sbjct: 206 RCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISA 265

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
            S+     EAL++ + M      P+  T+ + LT+CA     E GKQ+H  +I++     
Sbjct: 266 LSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHID 325

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            YV S+++++YAK G   EA+ VF  L +R+ VS T +I G+ Q G   E++ELF +++ 
Sbjct: 326 PYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRA 385

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL-- 311
           E M  +    A++++       +  G Q+HS  L+      VV+ NSLI MY+KCG+L  
Sbjct: 386 ELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQN 445

Query: 312 ---------------------TYS--------RRVFDNMSERTVISWNAMLVGYSKHGMG 342
                                 YS        R  FD+MS R VI+WNAML  Y +HG  
Sbjct: 446 AELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAE 505

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            + +++++ M  E  V PD VTY+ +  GC+  G    G  +    V  K G   +    
Sbjct: 506 EDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTV--KVGLILDTSVV 563

Query: 403 GCVVDMLGRAGRVGEA 418
             V+ M  + GR+ EA
Sbjct: 564 NAVITMYSKCGRISEA 579



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 71/375 (18%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR----------- 113
           L +C  +  L G + +H+ +I       V+L+  L+  Y  C  LSDAR           
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 114 ---------------------KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                                ++F  M  R+V SW  ++S Y Q      AL++F+ M +
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 153 S-DTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDM------- 203
           + D+ PN FTF  V+ SC GA G+ E+  Q+  L+ K + +    V ++L+DM       
Sbjct: 152 TGDSLPNAFTFGCVMKSC-GALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 204 ------------------------YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
                                   YAK+  +  A  +F+ +PERDVVS   +IS  ++ G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVL 297
              EA+++   +  +G+  +  TY S LTA + L++L  GKQ+H  V+R    I  YV  
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVA- 329

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            ++++++Y+KCG    ++RVF ++ +R  +SW  ++ G+ ++G   E VELFN MR E  
Sbjct: 330 -SAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE-L 387

Query: 358 VKPDSVTYLAVLSGC 372
           +  D      ++SGC
Sbjct: 388 MAVDQFALATLISGC 402



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 139/312 (44%), Gaps = 53/312 (16%)

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           E ++   + +++ YAK G + +A  +F  +P RDV S   I+SGY Q G    A+++F  
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 251 LQVEG-MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++  G  + N  T+  V+ +   L       Q+   + +F+      +Q +L+DM  +CG
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCG 208

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++ ++ + F  +   T+I  N+MLVGY+K                               
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAK------------------------------- 237

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM---P 426
              SHG   D  L +F      K   E ++  +  V+  L ++GRV EAL+ + +M    
Sbjct: 238 ---SHG--VDHALEIF------KSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKG 286

Query: 427 FEPTAAILGSLLGACRVHYNVDIGE----FVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
             P +    S L AC    +++ G+     V + L  I+P  A   V    LYA  G ++
Sbjct: 287 VRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMV---ELYAKCGCFK 343

Query: 483 DVTRVRELMKEK 494
           +  RV   ++++
Sbjct: 344 EAKRVFSSLRDR 355



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF-DNMS 322
           A  L +    +AL   + +HS ++   + S V LQN+L+  Y  CG+L+ +R +  D ++
Sbjct: 29  ADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEIT 88

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           E  VI+ N M+ GY+K G   + VELF  M        D  ++  ++SG    G     L
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTR-----DVASWNTIMSGYYQSGQFLNAL 143

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            +F  +    D   P    +GCV+   G  G    AL+ +
Sbjct: 144 DIFVSMRQTGDSL-PNAFTFGCVMKSCGALGWHEVALQLL 182



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 285 HVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           ++LR EI    V+  N +++ Y+K GSL+ +  +F  M  R V SWN ++ GY + G   
Sbjct: 81  NLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFL 140

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
             +++F  MR+     P++ T+  V+  C   G  +  L +   +       +P+++   
Sbjct: 141 NALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--T 198

Query: 404 CVVDMLGRAGRVGEA---LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +VDML R G +  A      IKN    PT     S+L      + VD
Sbjct: 199 ALVDMLVRCGAMDFASKQFSRIKN----PTIICRNSMLVGYAKSHGVD 242


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/487 (41%), Positives = 318/487 (65%), Gaps = 9/487 (1%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R   +PN+FT++T+LT+  G   FE+    H+  IK N+     VG++LLD Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + EA  VF+ + E+D+V+ +A+I GYAQ+G  E A+ +F ++  E +  N  T++ ++ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 270 LSG-LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
            +   A +  GKQ+H+  ++    + + + ++L+ MYSK G +  +  VF    ER ++S
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVS 176

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN+++ GY++HG GR+ +E+F  M+ +N ++ D VT++ V+S C+H G+ + G   F  +
Sbjct: 177 WNSIISGYAQHGYGRKALEVFEEMQRQN-LEMDGVTFIGVISACTHTGLANEGQRYFDIM 235

Query: 389 VDCKDG-FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           V  KD   EP +EHY C+VD+ GRAG + +A+E I  MPF  +A +  +LL A  +H N+
Sbjct: 236 V--KDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNL 293

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G+    +L+ ++P+N  +YV+L+N+YAS G W++  +VR+LM+EK V K  G SWIE+
Sbjct: 294 EVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEV 353

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
               +TF A D SHP+  ++ AK+++LS + K AGY PD S V  DVDEE KE +L  HS
Sbjct: 354 KNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHS 413

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ FGLIGTP G P++++KNLR+C DCH+  K +S + GR + +RD NRFHH   G 
Sbjct: 414 ERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGL 473

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 474 CSCGDYW 480



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 140/248 (56%), Gaps = 10/248 (4%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA  IK  Y     + T L+  Y K   + +A K+F  + E+++V+W+AMI  Y+Q   
Sbjct: 28  MHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGD 87

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGS 198
           +  A+ +F++M +   +PNE+TF+ ++ +CA    G E GKQ+H+  IKS F + + V S
Sbjct: 88  TEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSS 147

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           +LL MY+K G I  A  VF+   ERD+VS  +IISGYAQ G   +A+E+F ++Q + +  
Sbjct: 148 ALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEM 207

Query: 259 NYVTYASVLTALSGLAALGHGKQ-----VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           + VT+  V++A +       G++     V  H +   +  Y    + ++D+Y + G L  
Sbjct: 208 DGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY----SCMVDLYGRAGMLVK 263

Query: 314 SRRVFDNM 321
           +  + + M
Sbjct: 264 AMEIINEM 271



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 95/181 (52%), Gaps = 2/181 (1%)

Query: 43  TKALIEMATLGLEMRFEEYDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPVYLRTRLIV 101
            +  ++MA   ++     +  ++NAC      +  G+++HA  IK+ +   + + + L+ 
Sbjct: 92  VRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLT 151

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y+K   +  A ++F   RER++VSW ++IS Y+Q  +  +AL +F  M R + E +  T
Sbjct: 152 MYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVT 211

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           F  V+++C        G++   +++K  + E  +   S ++D+Y +AG + +A  +   +
Sbjct: 212 FIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEM 271

Query: 221 P 221
           P
Sbjct: 272 P 272


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 12/589 (2%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY---RPPVYLRTRLIVFYNKCECL 109
           GL        +LL        L  G  VHA+ ++         V + T L+  Y KC+ L
Sbjct: 196 GLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHL 255

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS- 168
             A ++F  M  RN V+W+A+I  +       EA NLF  ML    E   F  AT + S 
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML---VEGMCFLSATSVASA 312

Query: 169 ---CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
              CA      +G Q+H+L+ KS   + +  G+SLL MYAKAG I+EA  +F+ +  +D 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           +S  A++SGY Q G  EEA  +F+K+Q   +  +  T  S++ A S LAAL HG+  H  
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
           V+   +     + NSLIDMY+KCG +  SR+VFD M  R ++SWN M+ GY  HG+G+E 
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
             LF  M+ +   +PD VT++ +++ CSH G+   G   F  +   K G  P +EHY C+
Sbjct: 493 TTLFLSMKNQG-FEPDDVTFICLIAACSHSGLVTEGKHWFDTMTH-KYGILPRMEHYICM 550

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           VD+L R G + EA +FI++MP +    + G+LLGACR+H N+D+G+ V + + ++ PE  
Sbjct: 551 VDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGT 610

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
           GN+V+LSN++++AGR+++   VR + K K   K PG SWIE++  LH F   D+SHP   
Sbjct: 611 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSP 670

Query: 526 ELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           ++  ++  + +  K+ GY  D S VL D++EE+KEK LL HSEKLA+ FG++   E   I
Sbjct: 671 DIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTI 730

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            V KNLR+C DCH   K+++ V  R + +RD NRFHH   G CSCGD+W
Sbjct: 731 FVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 176/368 (47%), Gaps = 8/368 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     L  G+ +HAH         +++ T LI  Y +C     A  +F +M  R+
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           VV+W AM++ Y+       A+   + M  R    PN  T  ++L   A       G  +H
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 183 SLIIKSNF---ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +  +++     E  + +G++LLDMYAK   +  A  VF  +  R+ V+ +A+I G+    
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 240 LDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              EA  LF+ + VEGM   +  + AS L   + LA L  G Q+H+ + +  I + +   
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAG 344

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+ MY+K G +  +  +FD ++ +  IS+ A+L GY ++G   E   +F  M+  N V
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACN-V 403

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +PD  T ++++  CSH      G      ++    G   E      ++DM  + GR+  +
Sbjct: 404 QPDIATMVSLIPACSHLAALQHGRCSHGSVI--IRGLALETSICNSLIDMYAKCGRIDLS 461

Query: 419 LEFIKNMP 426
            +    MP
Sbjct: 462 RQVFDKMP 469



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 7/334 (2%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L+ AR++FD +   +  ++ A+I AYS +     A++L+  ML     PN++TF  VL +
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+       G+ IH+        + ++V ++L+D+Y +  R   A  VF  +P RDVV+ 
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            A+++GYA  G+   AI     +Q  G +  N  T  S+L  L+   AL  G  VH++ L
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCL 228

Query: 288 RFEIPS---YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           R  +      V++  +L+DMY+KC  L Y+ RVF  M+ R  ++W+A++ G+       E
Sbjct: 229 RAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTE 288

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
              LF  M  E      + +  + L  C+   + D  +      +  K G   ++     
Sbjct: 289 AFNLFKDMLVEGMCFLSATSVASALRVCA--SLADLRMGTQLHALLAKSGIHADLTAGNS 346

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
           ++ M  +AG + EA      +  + T +  G+LL
Sbjct: 347 LLSMYAKAGLINEATMLFDEIAIKDTIS-YGALL 379



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 96/184 (52%)

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           L+ +   G++  AR VF+ +P  D  +  A+I  Y+  G    AI+L+R +    +  N 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T+  VL A S LA L  G+ +H+H     + + + +  +LID+Y +C     +  VF  
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  R V++WNAML GY+ HGM    +     M++   ++P++ T +++L   +  G   +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 381 GLAV 384
           G +V
Sbjct: 220 GTSV 223


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/596 (35%), Positives = 351/596 (58%), Gaps = 7/596 (1%)

Query: 36  LCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
            C NG    AL     M   G++M      ++L  C     +  G  +H H++K      
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++   LI  Y+K   L DA+ +FD+M  R++VSW ++I+AY Q      AL  F  M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIH 211
               P+  T  ++ +  +      + + I   +I+  + +  + +G++L++MYAK G ++
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTAL 270
            A  VF+ LP +D +S   +++GY Q GL  EAI+ +  ++     I N  T+ S++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           S + AL  G ++H+ +++  +   V +   LID+Y KCG L  +  +F  +   T + WN
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++     HG G E ++LF  M  E +VK D +T++++LS CSH G+ D G   F +I+ 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAE-RVKADHITFVSLLSACSHSGLVDEGQKCF-DIMQ 554

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
            + G +P ++HYGC+VD+LGRAG + +A E ++NMP +P A+I G+LL AC+++ N ++G
Sbjct: 555 KEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELG 614

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
                RL+E++ EN G YV+LSN+YA+  +WE V +VR L +++ + K PG S + +   
Sbjct: 615 TLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSK 674

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
              F+  +++HP   E+  ++K LS K K  GYVPD S V  D++E++KE++L  HSE+L
Sbjct: 675 AEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERL 734

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           A+ FG+I TP  +PIR+ KNLR+C DCHN  K++S++  R++ +RD NRFHH  +G
Sbjct: 735 AIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 212/388 (54%), Gaps = 9/388 (2%)

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           L   F  +  +L ACV   +L  G++VH  + K  +   V++   L+  Y++   L  A 
Sbjct: 120 LRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAH 176

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           K+F +M  ++V SW AMIS + Q  ++  AL +  RM     + +  T A++L  CA + 
Sbjct: 177 KVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSD 236

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
               G  IH  ++K   +S ++V ++L++MY+K GR+ +A+ VF+ +  RD+VS  +II+
Sbjct: 237 DVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIA 296

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IP 292
            Y Q      A+  F+ +Q+ G+  + +T  S+ +  S L+     + +   V+R E + 
Sbjct: 297 AYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLD 356

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
             VV+ N+L++MY+K G +  +  VFD +  +  ISWN ++ GY+++G+  E ++ +N+M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            E     P+  T+++++   SH G   +G+ +  +++  K+    ++    C++D+ G+ 
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI--KNSLYLDVFVATCLIDLYGKC 474

Query: 413 GRVGEALEFIKNMPFE---PTAAILGSL 437
           GR+ +A+     +P +   P  AI+ SL
Sbjct: 475 GRLEDAMSLFYEIPRDTSVPWNAIIASL 502



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 171/315 (54%), Gaps = 11/315 (3%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +++ L N+CVN   +   +++HA ++       + L T+LI  Y     +S +R  FD +
Sbjct: 24  DFNALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYI 80

Query: 120 RERNVVSWTAMISAYSQKAHSFEALN----LFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
            ++N+ SW ++ISAY +     EA+N    LF         P+ +TF  +L +C      
Sbjct: 81  HKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD- 139

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
             GK++H  + K  FE  ++V +SL+ +Y++ G +  A  VF  +P +DV S  A+ISG+
Sbjct: 140 --GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G    A+ +  +++ EG+  + +T AS+L   +    + +G  +H HVL+  + S V
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            + N+LI+MYSK G L  ++ VFD M  R ++SWN+++  Y ++      +  F  M + 
Sbjct: 258 FVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM-QL 316

Query: 356 NKVKPDSVTYLAVLS 370
             ++PD +T +++ S
Sbjct: 317 GGIRPDLLTVVSLTS 331



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K++H+ +L F     +VL   LI++Y   G ++ SR  FD + ++ + SWN+++  Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 340 GMGREVVELFNL---MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC---KD 393
           G   E +   N    M     ++PD  T+  +L  C           V  + V C   K 
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS--------LVDGKKVHCCVFKM 150

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
           GFE ++     +V +  R G +  A +   +MP +   +    + G C+
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 347/604 (57%), Gaps = 38/604 (6%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRE 121
           LL  C N   LR   ++H  M+KT         ++L+ F        L+ AR +FD +  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            N   W  MI  YS      EAL L+  ML      N +TF  +L +C+     E  +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR--------------------------- 214
           H+ IIK  F S IY  +SLL++Y+K+G I  AR                           
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 215 ----GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
                +F  +PER+++S T++ISG    G  +EA+ LF ++Q  G+  + V   S L A 
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + L  L  GK +H+++ + EI    +L   LIDMY+KCG L  +  VF  M E+ V  W 
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           AM+ GY+ HG GRE +E F  M+    V+P+ +T+  +L+ CSH G+      +F E ++
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAG-VEPNQMTFTGILTACSHAGLVHEAKLLF-ESME 378

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
              GF+P IEHYGC+VD+LGRAG + EA E I+NMP +P AAI G+LL AC +H N+++G
Sbjct: 379 RIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELG 438

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           + +G+ L++++P + G Y+ L++++A+AG W    RVR  MKE+ V+K PG S I ++  
Sbjct: 439 KQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGT 498

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
            H F A D SHP  +E+   ++Q+  + +E GY P +  +L D+++++KE  +  HSEKL
Sbjct: 499 AHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKL 558

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+TFGLI T  G  IR++KNLR+C DCH   K +SKVY R++ +RD+ RFH   +G C+C
Sbjct: 559 AVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTC 618

Query: 631 GDYW 634
           GDYW
Sbjct: 619 GDYW 622


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 355/610 (58%), Gaps = 12/610 (1%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           L     +G +++A +  A +  E       TL+NA     +LR G+ +H   ++      
Sbjct: 298 LGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRD 357

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           + L   L+  Y +C    +AR +F  +   N VSW  MI+  SQK     A+ LF RM  
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQL 416

Query: 153 SDTEPNEFTFATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
               P   T+  +L + A     A     G+++HS I+   + S   +G++++ MYA  G
Sbjct: 417 EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCG 476

Query: 209 RIHEARGVFE--CLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
            I EA   F+   + +R DVVS  AIIS  +Q G  + A+  FR++ + G+  N +T  +
Sbjct: 477 AIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVA 536

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ER 324
           VL A +G AAL  G+ VH H+    + S + +  +L  MY +CGSL  +R +F+ ++ ER
Sbjct: 537 VLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVER 596

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            V+ +NAM+  YS++G+  E ++LF  M++E   +PD  ++++VLS CSHGG+ D G  +
Sbjct: 597 DVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGS-RPDEQSFVSVLSACSHGGLADEGWEI 655

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F  +     G  P  +HY C VD+LGRAG + +A E I+ M  +PT  +  +LLGACR +
Sbjct: 656 FRSMRQSY-GIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKY 714

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            +VD G      + E++P +   YV+LSN+ A AG+W++   VR  M+ + + K+ G+SW
Sbjct: 715 RDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSW 774

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           IE+   +H F A DRSHP  EE+  ++++L  + +E GYVPD   VL  VDE +KE++L 
Sbjct: 775 IEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLC 834

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSE+LA+  G++ +     +RV+KNLR+C DCHN  KF+SK+  +++ +RD +RFHH V
Sbjct: 835 QHSERLAIALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFV 893

Query: 625 EGTCSCGDYW 634
           +G+CSCGDYW
Sbjct: 894 DGSCSCGDYW 903



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 181/365 (49%), Gaps = 16/365 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL A  + R L  G+R+HA ++         L   L+  Y KCE L D  ++F  +  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
             SWT +I+AY++   +  A+ +F RM +     +  TF  VL +CA       G+ IH+
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++S  +    + + LL +Y   G +  A  +FE + ERD+VS  A I+  AQ G    
Sbjct: 153 WIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGI 211

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ELF+++Q+EG+    +T   ++ AL+  A +   + +H  V    +   +V+  +L  
Sbjct: 212 ALELFQRMQLEGVRPARIT---LVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALAS 268

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
            Y++ G L  ++ VFD  +ER V+SWNAML  Y++HG   E   LF  M  E  + P  V
Sbjct: 269 AYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG-ISPSKV 327

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           T +   +GCS        L     I  C  + G + +I     ++DM  R G   EA   
Sbjct: 328 TLVNASTGCS-------SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHL 380

Query: 422 IKNMP 426
            K +P
Sbjct: 381 FKRIP 385


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/615 (38%), Positives = 344/615 (55%), Gaps = 54/615 (8%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN-KCECLSDARKMFDEMRERNVVSWTAM 130
           +T R  +++HA  IKT           +I F       +  AR +F +M E N   W  +
Sbjct: 30  KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTI 89

Query: 131 --ISAYSQKAH-SFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
             I A +   H   EAL LF  ML     +PN FTF +VL +CA A     GKQIH LI+
Sbjct: 90  LRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIV 149

Query: 187 KSNFESHIYVGSSLLDMYA----------------------------------------- 205
           K  F    +V S+L+ MY                                          
Sbjct: 150 KFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNI 209

Query: 206 ------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
                 + G I  A+ +F+ +P R VVS   +ISGYAQ G   EAI LF+++Q   +  N
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPN 269

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           YVT  SVL A++ + AL  GK +H +  + ++    VL ++L+DMYSKCGS+  + +VF+
Sbjct: 270 YVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFE 329

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            + +R  I+W+A++  ++ HG   + +  F+LM +   V P+ V Y+ +LS CSH G+ +
Sbjct: 330 TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG-VTPNDVAYIGILSACSHAGLVE 388

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            G + F  +V    G +P IEHYGC+VD+LGRAG + EA E I+NMP EP   I  +LLG
Sbjct: 389 EGRSFFSHMVKVV-GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           AC++H N+ +GE V + LME+ P ++G+YV LSNLYAS G WE V RVR  MK   + KD
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507

Query: 500 PGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQK 559
           PG SWIE+  I+H F   D SH   +E+ A + ++S+K +  GY P+   V  + DE+++
Sbjct: 508 PGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQER 567

Query: 560 EKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNR 619
            + L  HSEK+A+ FGLI T    P++++KNLRIC DCH   K +S +Y R++ +RD+ R
Sbjct: 568 ARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKR 627

Query: 620 FHHIVEGTCSCGDYW 634
           FH    G+CSC DYW
Sbjct: 628 FHQFEHGSCSCMDYW 642



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 153/339 (45%), Gaps = 52/339 (15%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD--------- 111
           + ++L AC     LR G+++H  ++K  +    ++ + L+  Y  C  + D         
Sbjct: 125 FPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV 184

Query: 112 --------------------------------------ARKMFDEMRERNVVSWTAMISA 133
                                                 A+ +FDEM  R+VVSW  MIS 
Sbjct: 185 VDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISG 244

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+Q  H  EA+NLF  M  S+ +PN  T  +VL + A     ELGK IH    K+  E  
Sbjct: 245 YAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEID 304

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
             +GS+L+DMY+K G I +A  VFE LP+R+ ++ +AII  +A  G  E+AI  F  +  
Sbjct: 305 DVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLT 312
            G+  N V Y  +L+A S    +  G+   SH+++   +   +     ++D+  + G L 
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424

Query: 313 YSRRVFDNMS-ERTVISWNAMLVGYSKH---GMGREVVE 347
            +  +  NM  E   + W A+L     H    MG  V E
Sbjct: 425 EAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +A+    EM +  ++  +    ++L A      L  G+ +H +  K        L
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVL 307

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y+KC  +  A ++F+ + +RN ++W+A+I A++    + +A+  F  M ++  
Sbjct: 308 GSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLDMYAKAGRIHEAR 214
            PN+  +  +L++C+ A   E G+   S ++K    +  I     ++D+  +AG + EA 
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 215 GVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +   +P E D V   A++     +  L + E   E   +L       +YV  +++  +L
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDS-GSYVALSNLYASL 486

Query: 271 SGLAALG 277
               A+ 
Sbjct: 487 GNWEAVA 493


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/604 (38%), Positives = 358/604 (59%), Gaps = 20/604 (3%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G+  +  + M   G E       ++++AC  Q +   GQ++H+ +++        +   L
Sbjct: 231 GKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGL 290

Query: 100 IVFYNKCE---CLSDARKMFDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDT 155
           +  Y K +    +  ARK+F  M   NV+SWTA+IS Y Q       A+ L   ML    
Sbjct: 291 VDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESI 350

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           EPN  T++++L +CA     + G+QIH+ ++K++  +   VG++L+ MYA++G + EAR 
Sbjct: 351 EPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARK 410

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM---ISNYVTYASVLTALSG 272
            F+ L ER+++S ++ I    +      +       Q+E M   +S + T+AS+L+A + 
Sbjct: 411 AFDQLYERNLLSTSSDIGETGRSNASWSS-------QIESMDVGVSTF-TFASLLSAAAT 462

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNA 331
           +     G+Q+H+  ++    S   + NSL+ MYS+CG L  + R FD M  +  VISW +
Sbjct: 463 VGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTS 522

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++   +KHG     + LF+ M     VKP+ VTY+AVLS CSH G+   G   F  +   
Sbjct: 523 IISALAKHGHAERALSLFHDMILSG-VKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQ-- 579

Query: 392 KDG-FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
           KD    P +EHY C+VD+L R+G V EALEFI  MP +  A +  +LLGACR + N++IG
Sbjct: 580 KDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIG 639

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
           E   + ++++EP++   YV+LSNLYA  G W++V R+R LM+ + ++K+ G SW+ +   
Sbjct: 640 EIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNT 699

Query: 511 LHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           +H F A D SHP  +E+ AK+  L  + K+ GYVPD S VL+D+ ++ KE+ LL HSEK+
Sbjct: 700 IHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKI 759

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI T    PIR+ KNLR+C DCH+  K++SK  GR++ LRD NRFH + +G CSC
Sbjct: 760 AVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSC 819

Query: 631 GDYW 634
           G+YW
Sbjct: 820 GEYW 823



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 171/327 (52%), Gaps = 11/327 (3%)

Query: 77  GQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAY 134
           G+ +H  ++ T        +   L+  Y+KC  +  AR++FD MR  R++VSWTAM    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGKQIHSLIIKSNF-ES 192
           ++     EAL L   ML S   PN FT      +C  G      G  +    IK+ F  +
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGT 181

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            + VG +L+DM+A+ G +  AR VF  L ER VV  T +I+ Y Q G   +A+ELF  + 
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC---G 309
            +G   +  T +S+++A +   + G G+Q+HS VLR  + S   +   L+DMY+K     
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQ 301

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE--VVELFNLMREENKVKPDSVTYLA 367
           S+  +R+VF  M    V+SW A++ GY + G G+E   VEL   M  E+ ++P+ +TY +
Sbjct: 302 SMECARKVFKRMPTHNVMSWTALISGYVQCG-GQENNAVELLCEMLNES-IEPNHLTYSS 359

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           +L  C++   +D G  +   ++    G
Sbjct: 360 LLKACANLSDQDSGRQIHARVMKTSIG 386


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 354/620 (57%), Gaps = 49/620 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           Y  LL +C  + +L  G+R+HA +I T     P  +L   L+ FY  C C   ARK+FDE
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 119 M--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           +    ++ V WT ++  + +   S EAL +F+ M R   +P+E T   +   CA      
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG--------------------- 215
           +G Q H  ++K          ++++DMYAK+G + EAR                      
Sbjct: 136 VGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVI 195

Query: 216 ----------VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE-GMISNYVTYA 264
                     VF+ +PER+ V+ T +I+GY   GL +E+  L R++  +  M  NYVT  
Sbjct: 196 RSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLC 255

Query: 265 SVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           S+LTA S    L  G+ VH++ L+  E    +++  +++DMY+KCG +  + + F  M +
Sbjct: 256 SILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQ 315

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R V+SWNAML G + HG+GR  +++F  M +E   KPD VT+ +VLS CSH G+ D+G  
Sbjct: 316 RNVVSWNAMLSGLAMHGLGRAALDIFPQMFKE--AKPDDVTFTSVLSACSHSGLVDQGCF 373

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            F  + +   G  P++EHY C+VD+LGRAGR+ EA   ++ MP  P   +LGSLLG+C +
Sbjct: 374 YFGNL-ESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSI 432

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H  + +GE + Q L++++P+N   +++LSN+YA AG+      +R+++K++ + K PG S
Sbjct: 433 HGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMS 492

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD---------V 554
            I +   +H F A D+SHP   E+   + ++  + + AGY P+ +   +          V
Sbjct: 493 SIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLV 552

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           ++E+KE+ L  HSEKLA+ FGLI T  G P+ + KNLRIC DCH+  K VSK+Y R++ +
Sbjct: 553 EQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVI 612

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD+NRFH   EG+CSC DYW
Sbjct: 613 RDRNRFHCFKEGSCSCCDYW 632



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 110/214 (51%), Gaps = 27/214 (12%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLS 110
           L +E+ +    ++L AC     L  G+ VHA+ +KT  +   + + T ++  Y KC  + 
Sbjct: 245 LEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIH 304

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            A K F +M +RNVVSW AM+S  +       AL++F +M + + +P++ TF +VL++C+
Sbjct: 305 IAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFK-EAKPDDVTFTSVLSACS 363

Query: 171 -------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
                  G F F   + ++ +  K          + ++D+  +AGR+ EA  +   +P R
Sbjct: 364 HSGLVDQGCFYFGNLESVYGITPKVEHY------ACMVDLLGRAGRLEEAEILVREMPIR 417

Query: 224 --DVV------SCTAIISGYAQLG--LDEEAIEL 247
             +VV      SC+  I G  QLG  L +E ++L
Sbjct: 418 PNEVVLGSLLGSCS--IHGKLQLGEHLLQELVQL 449


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 340/556 (61%), Gaps = 36/556 (6%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEPNEFTFATVLTSC 169
           + ++ D+  +  + +  +MI AYS+     ++   + ++L+S+    P+ +TF  ++ +C
Sbjct: 62  SNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC 121

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA------------------------ 205
           A +   E G  +H  +IK  FE   +V S L+ MYA                        
Sbjct: 122 AQS-ACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQT 180

Query: 206 -------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
                  K G I  AR +F+ +P+RD VS  A+I+GYAQ G   EA+ LF+ +Q++G+  
Sbjct: 181 TMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 240

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           N V+  SV+TA + L AL  GK  H+++ + +I   V L  +L+DMY KCG++  + +VF
Sbjct: 241 NEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVF 300

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378
             M+E+ V +W+  + G + +G G++ +ELF+ M+ E  + P+ +T+++VL GCS  G  
Sbjct: 301 WEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEG-IAPNEITFISVLKGCSVVGFV 359

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438
           D G + F  +     G EP +EHYGC+VD+ GRAGR+ EAL FI  MP +P A   G+LL
Sbjct: 360 DEGRSHFDSMKR-DHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALL 418

Query: 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498
            ACR++ N+++GEF  ++L+E+E +N G YV LSN+YA  G W+ V+ VR+ MK + ++K
Sbjct: 419 NACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISK 478

Query: 499 DPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558
            PG S +E++  +H F + D+SHP  + +     ++S + K AGYV   + VL+D++EE+
Sbjct: 479 LPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEE 538

Query: 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKN 618
           KE  L  HSEK+A+ FGL    EG PIR++KNLRIC DCH+ +K +SK++ R++ +RD+N
Sbjct: 539 KEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRN 598

Query: 619 RFHHIVEGTCSCGDYW 634
           RFHH  +G CSC D+W
Sbjct: 599 RFHHFKDGECSCKDFW 614



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +P +  +T ++    KC  +  AR +FD M +R+ VSW AMI+ Y+Q+  S EALNLF  
Sbjct: 173 KPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKL 232

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M     + NE +  +V+T+C      + GK  H+ I K+  +  + +G++L+DMY K G 
Sbjct: 233 MQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGN 292

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  VF  + E++V + +  I G A  G  ++ +ELF  ++ EG+  N +T+ SVL  
Sbjct: 293 VDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKG 352

Query: 270 LSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VI 327
            S +  +  G+     + R   I   +     ++D+Y + G L  +    + M  +    
Sbjct: 353 CSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAG 412

Query: 328 SWNAML 333
           +W A+L
Sbjct: 413 AWGALL 418



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +++ AC +   L  G+  HA++ K   +  V L T L+  Y KC  +  A K+F EM E+
Sbjct: 247 SVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEK 306

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF--ELGKQ 180
           NV +W+  I   +   +  + L LF  M      PNE TF +VL  C+   GF  E    
Sbjct: 307 NVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCS-VVGFVDEGRSH 365

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             S+      E  +     ++D+Y +AGR+ EA      +P
Sbjct: 366 FDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMP 406



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV-KPDSVTYLAV 368
           +L YS ++ D  ++ T+ + N+M+  YSK     +  + +N + + N V  PD+ T+  +
Sbjct: 58  NLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFL 117

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFE--PEIE 400
           +  C+    E  G AV   ++  K GFE  P +E
Sbjct: 118 VRTCAQSACE-AGPAVHGALI--KHGFEYDPHVE 148


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 341/573 (59%), Gaps = 4/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            L+ A      L  G+ VHA+ I+      + +   L+  Y KC C+      F+ M E+
Sbjct: 354 NLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEK 413

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SWT +I+ Y+Q     EA+NLF ++     + +     +VL +C+G       ++IH
Sbjct: 414 DLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH 473

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + K +  + I + ++++++Y + G I  AR  FE +  +D+VS T++I+     GL  
Sbjct: 474 GYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPV 532

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ELF  L+   +  + +   S L+A + L++L  GK++H  ++R        + +SL+
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLV 592

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+ CG++  SR++F ++ +R +I W +M+     HG G + + LF  M ++N V PD 
Sbjct: 593 DMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQN-VIPDH 651

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+LA+L  CSH G+   G   F EI+      EP  EHY C+VD+L R+  + EA  F+
Sbjct: 652 ITFLALLYACSHSGLMVEG-KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFV 710

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           +NMP +P++ I  +LLGAC +H N ++GE   + L++ + EN+G Y ++SN++A+ GRW 
Sbjct: 711 RNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWN 770

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEA 541
           DV  VR  MK   + K+PG SWIE+D  +HTF A D+SHP  +++  K+ Q +    K+ 
Sbjct: 771 DVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKG 830

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+     V ++V EE+K ++L GHSE+LAL +GL+ TP+G  IR+ KNLRIC DCH F 
Sbjct: 831 GYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFF 890

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K  S+V  R + +RD NRFHH   G CSCGD+W
Sbjct: 891 KIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 202/394 (51%), Gaps = 14/394 (3%)

Query: 26  FPPNPQNLKTLCSNGQLTKA-----LIEMATLGLEMRFEE-YDTLLNACVNQRTLRGGQR 79
            P  P ++ TL + G L  A     L+    L    R E  +  LL+ CV  + L  GQ+
Sbjct: 9   LPLKPISVNTL-NKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQ 67

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA ++K+      +L T+L++ Y KC  L DA K+FDEM ER + SW A++ A+     
Sbjct: 68  LHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGK 125

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             EA+ L+  M       +  TF +VL +C       LG +IH + +K  +   ++V ++
Sbjct: 126 YLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNA 185

Query: 200 LLDMYAKAGRIHEARGVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           L+ MY K G +  AR +F+   + + D VS  +IIS +   G   EA+ LFR++Q  G+ 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVA 245

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           SN  T+ + L  +   + +  G  +H  VL+    + V + N+LI MY+KCG +  + RV
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F++M  R  +SWN +L G  ++ +  + +  F  M+   + KPD V+ L +++     G 
Sbjct: 306 FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ-KPDQVSVLNLIAASGRSGN 364

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
             +G  V    +  ++G +  ++    +VDM  +
Sbjct: 365 LLKGKEVHAYAI--RNGLDSNMQIGNTLVDMYAK 396



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 218/440 (49%), Gaps = 22/440 (5%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+ +    + ++L AC      R G  +H   +K  Y   V++   LI  Y KC 
Sbjct: 135 DMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCG 194

Query: 108 CLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            L  AR +FD   M + + VSW ++ISA+  + +  EAL+LF RM       N +TF   
Sbjct: 195 DLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L         +LG  IH  ++KSN  + +YV ++L+ MYAK GR+ +A  VFE +  RD 
Sbjct: 255 LQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDY 314

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS   ++SG  Q  L  +A+  FR +Q  G   + V+  +++ A      L  GK+VH++
Sbjct: 315 VSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            +R  + S + + N+L+DMY+KC  + Y    F+ M E+ +ISW  ++ GY+++    E 
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEA 434

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG-LAVFHEIVDCKDGFEPEIEHYGC 404
           + LF  ++ +  +  D +   +VL  CS  G++ R  +   H  V  +D    +I     
Sbjct: 435 INLFRKVQVKG-MDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRD--LADIMLQNA 489

Query: 405 VVDMLGRAGRVG---EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE---FVGQRLM 458
           +V++ G  G +     A E I++       +++      C VH  + +     F   +  
Sbjct: 490 IVNVYGEVGHIDYARRAFESIRSKDIVSWTSMI-----TCCVHNGLPVEALELFYSLKQT 544

Query: 459 EIEPENAGNYVILSNLYASA 478
            I+P++     I+S L A+A
Sbjct: 545 NIQPDSIA---IISALSATA 561


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 330/559 (59%), Gaps = 2/559 (0%)

Query: 77  GQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G ++H+  I+  Y P   ++    +  Y K   L  AR +F EM  RNVV+W A+++   
Sbjct: 30  GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 89

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 E +  +  +  +   PN  +      +CAGA    LG+Q H  ++K  FE  + 
Sbjct: 90  LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 149

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V +S++D Y K     +AR VF+ +  R+ VS  ++++ YAQ G +EEA   +   +  G
Sbjct: 150 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 209

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
                   +S LT  +GL  L  G+ +H+  +R  I + + + ++L+DMY KCG +  + 
Sbjct: 210 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 269

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++F    +R +++WNAM+ GY+  G  +  + +F+ M    +  P+ +T + V++ CS G
Sbjct: 270 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 329

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G  +F  + + + G EP  EHY CVVD+LGRAG   +A E I+ MP  P+ ++ G
Sbjct: 330 GLTKDGYELFETMRE-RFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 388

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGAC++H   ++G    ++L E++P+++GN+V+LSN++ASAGRW + T +R+ MK   
Sbjct: 389 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 448

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + KDPG SW+    ++H F A D  H M  E+ A + +L  + + AGY+PD    LYD++
Sbjct: 449 IKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLE 508

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+KE  +  HSEKLAL FGLI  P G PIR++KNLRICVDCH   KF+S + GR++ +R
Sbjct: 509 EEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVR 568

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFHH  +  CSCGDYW
Sbjct: 569 DNNRFHHFKQYQCSCGDYW 587



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 156/297 (52%), Gaps = 9/297 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
              NAC     L  G++ H  ++K  +   V +   ++ FY KC C   AR +FD M  R
Sbjct: 118 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR 177

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N VSW +M++AY+Q     EA   ++   RS  EP +F  ++ LT+CAG  G  LG+ +H
Sbjct: 178 NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALH 237

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           ++ ++S  +++I+V S+L+DMY K G + +A  +F   P+R++V+  A+I GYA +G  +
Sbjct: 238 AVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQ 297

Query: 243 EAIELFRKLQVEGMIS-NYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            A+ +F  +   G  + NY+T  +V+T+ S  GL   G+ +   +   RF I        
Sbjct: 298 NALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY-ELFETMRERFGIEPRTEHYA 356

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHG---MGREVVE-LFNL 351
            ++D+  + G    +  V   M  R  IS W A+L     HG   +GR   E LF L
Sbjct: 357 CVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFEL 413



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 159/354 (44%), Gaps = 18/354 (5%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFE-LGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKA 207
           MLR    PN+FTF +   + A A     +G QIHSL I+  +     +V  + LDMY K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           GR+  AR +F  +P R+VV+  A+++     G   E IE +  L+  G + N V+  +  
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A +G   L  G+Q H  V++      V + NS++D Y KC     +R VFD M  R  +
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SW +M+  Y+++G   E    +   R   + +P      + L+ C+  G+    L     
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAYLGARRSGE-EPTDFMVSSALTTCA--GLLGLHLGRALH 237

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
            V  +   +  I     +VDM G+ G V +A +     P +       +++G        
Sbjct: 238 AVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGG-----YA 291

Query: 448 DIGEFVGQRL----MEIEPENAGNYVILSNLYASAGRW---EDVTRVRELMKEK 494
            IG+     L    M    E A NY+ L N+  S  R    +D   + E M+E+
Sbjct: 292 HIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRER 345


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 345/573 (60%), Gaps = 5/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   L  G+ VH +MI + Y         LI  Y KC  L  ++++F  M+ +
Sbjct: 321 SILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 380

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VSW +MI+ Y Q     EA+ LF +M+++D +P+  T+  +L+         LGK++H
Sbjct: 381 DSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELH 439

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + K  F S+I V ++L+DMYAK G + ++  VFE +  RD+++   II+         
Sbjct: 440 CDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCN 499

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             + +  +++ EG+  +  T  S+L   S LAA   GK++H  + +  + S V + N LI
Sbjct: 500 LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI 559

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MYSKCGSL  S +VF  M  + V++W A++     +G G++ V  F  M E   + PD 
Sbjct: 560 EMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM-EAAGIVPDH 618

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           V ++A++  CSH G+ + GL  FH +   KD   EP IEHY CVVD+L R+  + +A +F
Sbjct: 619 VAFVAIIFACSHSGLVEEGLNYFHRMK--KDYKIEPRIEHYACVVDLLSRSALLDKAEDF 676

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MP +P ++I G+LL ACR+  + +I E V +R++E+ P++ G YV++SN+YA+ G+W
Sbjct: 677 ILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKW 736

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V  +R+ +K + + KDPG SW+E+   ++ F    +     EE++  +  L+    + 
Sbjct: 737 DQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKE 796

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+ ++  VL+D+DE++K  +L GHSE+LA+ FGL+ T  G P++V+KNLR+C DCH   
Sbjct: 797 GYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVT 856

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++SK+  R++ +RD NRFH   +G CSCGDYW
Sbjct: 857 KYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 217/416 (52%), Gaps = 10/416 (2%)

Query: 15  TFTQQQLTVPSFPPNPQN--LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACV 69
           +F+  +L  PS      N  ++ L  NG  ++AL    E   + L+     + +++NAC 
Sbjct: 67  SFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 126

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
                   + +H  ++   +   +Y+   LI  Y +   L  ARK+F+EM  R+VVSW +
Sbjct: 127 GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 186

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +IS Y+   +  EAL ++ R       P+ +T ++VL +C G    E G  IH LI K  
Sbjct: 187 LISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG 246

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +  + V + LL MY K   + + R +F+ +  RD VS   +I GY+Q+GL EE+I+LF 
Sbjct: 247 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 306

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++ V     + +T  S+L A   L  L  GK VH +++           N LI+MY+KCG
Sbjct: 307 EM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG 365

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           +L  S+ VF  M  +  +SWN+M+  Y ++G   E ++LF +M+ +  VKPDSVTY+ +L
Sbjct: 366 NLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD--VKPDSVTYVMLL 423

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           S  +  G    G  +  ++   K GF   I     +VDM  + G +G++L+  +NM
Sbjct: 424 SMSTQLGDLHLGKELHCDLA--KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 477



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 11/369 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++  A  +  T     ++H+ +I       V    +LI  Y       D    F   R
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH---FRDPTSSFSVFR 72

Query: 121 ----ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
                 NV  W ++I A +      EAL+L+    R   +P+ +TF +V+ +CAG   FE
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           + K IH  ++   F S +Y+G++L+DMY +   + +AR VFE +P RDVVS  ++ISGY 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             G   EA+E++ + +  G++ +  T +SVL A  GL ++  G  +H  + +  I   V+
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N L+ MY K   L   RR+FD M  R  +SWN M+ GYS+ G+  E ++LF  M   N
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVN 310

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           + KPD +T  ++L  C H G  + G  V   ++    G+E +      +++M  + G + 
Sbjct: 311 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMI--TSGYECDTTASNILINMYAKCGNLL 368

Query: 417 EALEFIKNM 425
            + E    M
Sbjct: 369 ASQEVFSGM 377



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 39  NGQLTKA--LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           NG   +A  L +M    ++     Y  LL+       L  G+ +H  + K  +   + + 
Sbjct: 395 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + D+ K+F+ M+ R++++W  +I++          L +  RM      
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 514

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+  T  ++L  C+       GK+IH  I K   ES + VG+ L++MY+K G +  +  V
Sbjct: 515 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 574

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           F+ +  +DVV+ TA+IS     G  ++A+  F +++  G++ ++V + +++ A S
Sbjct: 575 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 629


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/624 (36%), Positives = 344/624 (55%), Gaps = 40/624 (6%)

Query: 48   EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
            E+   G+    E Y   L  C     +  G  +H  +IK  +   VYLR  L+ FY +C 
Sbjct: 513  ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 572

Query: 108  CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             L  A ++F EM     + W   I    Q     + + LF +M  S  +    T   VL 
Sbjct: 573  GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 632

Query: 168  SCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER--- 223
            +     GF  +GK+ H  ++++ F+  +YVG+SL+DMY K   +  A+ VF+ +  R   
Sbjct: 633  ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692

Query: 224  --------------------------------DVVSCTAIISGYAQLGLDEEAIELFRKL 251
                                            D+V+   +ISGYA  G  +EA+  F ++
Sbjct: 693  AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQM 752

Query: 252  QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
            Q EG++ N  +   +L A + L+ L  GK++H   +R      V +  +LIDMYSK  SL
Sbjct: 753  QQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSL 812

Query: 312  TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
              + +VF  +  +T+ SWN M++G++  G+G+E + +FN M++   V PD++T+ A+LS 
Sbjct: 813  KNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG-VGPDAITFTALLSA 871

Query: 372  CSHGGMEDRGLAVFHE-IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            C + G+   G   F   I D +    P +EHY C+VD+LGRAG + EA + I  MP +P 
Sbjct: 872  CKNSGLIGEGWKYFDSMITDYR--IVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 929

Query: 431  AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
            A I G+LLG+CR+H N+   E   + L ++EP N+ NY+++ NLY+   RWED+  +REL
Sbjct: 930  ATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLREL 989

Query: 491  MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
            M    V      SWI+++Q +H F + ++ HP   ++  ++ QL  + K+ GYVPD++CV
Sbjct: 990  MGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCV 1049

Query: 551  LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
              ++DE +K+K+LL H+EKLA+T+GLI    G PIRVIKN RIC DCH+ AK++S V  R
Sbjct: 1050 YQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKAR 1109

Query: 611  KVSLRDKNRFHHIVEGTCSCGDYW 634
            ++ LRD  RFHH  EG CSC D+W
Sbjct: 1110 ELFLRDGVRFHHFREGKCSCNDFW 1133



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY-AQLGLDEEAIELFRKLQVEG 255
             +L+  Y   G    A  VF     R+ +   + +  + +  G     +E+F++L  +G
Sbjct: 459 AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 518

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           ++ +   Y+  L   + +  +  G ++H  +++      V L+ +L++ Y +C  L  + 
Sbjct: 519 VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 578

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL-SGCSH 374
           +VF  M     + WN  ++   +    ++ VELF  M + + +K ++ T + VL +  S 
Sbjct: 579 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQASISE 637

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            G  + G      ++  ++GF+ ++     ++DM  +   +  A     NM
Sbjct: 638 LGFLNMGKETHGYVL--RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNM 686


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 340/584 (58%), Gaps = 64/584 (10%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A K+F  +   NV  W  +I    +    F+A+  + RM+  D  PN+FT+ T+  +C+ 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSV 144

Query: 172 AFGFELGKQIHSLIIKSNF------------------------------ESHIYVGSSLL 201
           A   + G+QIH  ++K                                 ES +   ++++
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMI 204

Query: 202 DMYAKAGRIHEARGVFECLP-------------------------------ERDVVSCTA 230
           D Y K G +  A+G+F  +P                               ERD +S ++
Sbjct: 205 DGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSS 264

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           ++ GY   G  +EA+E+F+++Q E         +SVL A S + A+  G+ VH+++ R  
Sbjct: 265 MVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS 324

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           I    VL  +L+DMY+KCG L     VF+ M ER + +WNAM+ G + HG   + +ELF+
Sbjct: 325 IKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS 384

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            + +E ++KP+ +T + VL+ C+H G  D+GL +F  + +   G +PE+EHYGC+VD+LG
Sbjct: 385 KL-QEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY-GVDPELEHYGCMVDLLG 442

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R+G   EA + I +MP +P AA+ G+LLGACR+H N D+ E VG+ L+E+EP+N+G YV+
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVL 502

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSN+YA  GR++DV+++R+LMK++ +   PG S ++L+  +H F   D SHP  +E+  K
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           +K +  + + AG+ PD S VL+D+DEE+KE  +  HSEKLA+ FGLI T  G  I ++KN
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKN 622

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH+  K +S+++ R++ +RD+ R+HH   GTCSC D+W
Sbjct: 623 LRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 10/238 (4%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DARK+FDEM ER+ +SW++M+  Y       EAL +F +M R +T P  F  ++VL +
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+     + G+ +H+ + +++ +    +G++LLDMYAK GR+     VFE + ER++ + 
Sbjct: 304 CSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTW 363

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+I G A  G  E+A+ELF KLQ   M  N +T   VLTA +    +  G ++   +  
Sbjct: 364 NAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMRE 423

Query: 289 F-----EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG 340
           F     E+  Y      ++D+  + G  + +  + ++M  +     W A+L     HG
Sbjct: 424 FYGVDPELEHY----GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 154/324 (47%), Gaps = 21/324 (6%)

Query: 180 QIHSLIIKS-NFESHIYVGSSLLDMYAKA--GRIHEARGVFECLPERDVVSCTAIISGYA 236
           Q+H L+++S +F+ H YV  +LL  YA         A  VF  +P  +V     +I G  
Sbjct: 51  QLHGLVLRSGHFQDH-YVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCL 109

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     +AI  + ++ ++    N  TY ++  A S   A+  G+Q+H HV++  I S V 
Sbjct: 110 ENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           ++++ I MY+  G L  +R++F +  E  V+ WN M+ GY K G+      LF  M  +N
Sbjct: 169 IKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
                  ++  +++G + GG       +F E+ +       EI  +  +VD    AGR  
Sbjct: 228 -----IGSWNVMINGLAKGGNLGDARKLFDEMSE-----RDEIS-WSSMVDGYISAGRYK 276

Query: 417 EALEFIKNMPFE---PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILS 472
           EALE  + M  E   P   IL S+L AC     +D G +V   L     + +A     L 
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 473 NLYASAGRWEDVTRVRELMKEKAV 496
           ++YA  GR +    V E MKE+ +
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREI 360



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC N   +  G+ VHA++ +   +    L T L+  Y KC  L    ++F+EM+ER
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            + +W AMI   +    + +AL LF ++     +PN  T   VLT+CA A   + G +I 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 183 SLI-----IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +     +    E +      ++D+  ++G   EA  +   +P +   +    + G  +
Sbjct: 419 QTMREFYGVDPELEHY----GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACR 474

Query: 238 LGLDEEAIELFRKLQVE 254
           +  + +  E   K+ +E
Sbjct: 475 IHGNFDLAERVGKILLE 491


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 320/542 (59%), Gaps = 42/542 (7%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++   L+  Y+K   L  AR++FD+M +R+VV+W AMI+  SQ    + A  +F +M+ 
Sbjct: 150 VFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVD 209

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
            D    + ++ T++                                     YA  G   E
Sbjct: 210 QD----DVSWGTMMAG-----------------------------------YAHNGCFVE 230

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
              +F+ +   +V +   II+ Y Q G  +EAI  F ++++E    N VT+ SVL A + 
Sbjct: 231 VLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LAA   G   H+ +++    S  ++ NSLIDMY+KCG L YS ++F+ M  +  +SWNAM
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           L GY+ HG G   + LF+LM +E++V+ DSV++++VLS C H G+ + G  +FH + D K
Sbjct: 350 LSGYAVHGHGDRAIALFSLM-QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSD-K 407

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              +P++EHY C+VD+LGRAG   E L FIK MP EP A + G+LLG+CR+H NV +GE 
Sbjct: 408 YHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEV 467

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
               L+++EP N  ++V+LS++YA +GRW D  + R  M +  + K PG SW+EL   +H
Sbjct: 468 ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 527

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F   D+SHP  E +      L  K ++ GYVPD SCVL +V+EE KE  L  HSE+LA+
Sbjct: 528 AFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAI 587

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           TF L+ TP G+ I+++KNLR+C DCH   KF+SK+  R++ +RD  RFHH  +G CSC D
Sbjct: 588 TFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCND 647

Query: 633 YW 634
           YW
Sbjct: 648 YW 649


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 330/532 (62%), Gaps = 2/532 (0%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y KC  L  A  +F  M  + V SW A+I  + Q     +AL+L++ M  S  EP+ FT 
Sbjct: 446 YAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTI 505

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           A++L++CA       GK+IH  ++++ FE   ++  SL+ +Y + G+I  A+  F+ + E
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           +++V    +I+G++Q     +A+++F ++    +  + ++    L A S ++AL  GK++
Sbjct: 566 KNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKEL 625

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H   ++  +  +  +  SLIDMY+KCG +  S+ +FD +  +  ++WN ++ GY  HG G
Sbjct: 626 HCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHG 685

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           R+ +ELF  M+     +PDSVT++A+L+ C+H G+   GL    ++     G +P++EHY
Sbjct: 686 RKAIELFKSMQNAG-FRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF-GIKPKLEHY 743

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            CVVDMLGRAGR+ EALE +  +P +P + I  SLL +CR + ++DIGE V  +L+E+ P
Sbjct: 744 ACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGP 803

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           + A NYV++SN YA  G+W++V ++R+ MKE  + KD G SWIE+   +  F   D S  
Sbjct: 804 DKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLL 863

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
              ++     +L  K  + GY PD SCVL++++E++K K+L  HSEKLA++FGL+ T +G
Sbjct: 864 QSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKG 923

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +RV KNLRICVDCHN  K VSK+  R++ +RD  RFHH   G CSCGDYW
Sbjct: 924 TTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 200/381 (52%), Gaps = 19/381 (4%)

Query: 4   PKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKA-------LIEMATLGLEM 56
           P K S  FS +  + ++    S     ++   LC+ G L +A       L ++ +     
Sbjct: 37  PPKSSHLFSPIISSHKKQQNAS-----KHFHNLCNTGNLNQAFNFLQSNLNDVVSSSNSK 91

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARK 114
             +    LL  C   + +  G+++H + I T   ++  V L TRL+  Y+ C+   D+  
Sbjct: 92  PKQLIGLLLQLCGEYKNIEIGRKIH-NFISTSPHFQNDVVLITRLVTMYSICDSPYDSCL 150

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAF 173
           +F+  R +N+  W A++S Y + +   +A+ +F+ M+  ++  P+ FT   V+ +C G +
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              LG+ +H   +K+   S ++VG++L+ MY K G +  A  VF+ +P+R++VS  +++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 234 GYAQLGLDEEAIELFRKL--QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
              + G+ EE+  LF+ L    EG++ +  T  +V+   +    +  G   H   L+  +
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              + + +SL+DMYSKCG L  +R +FD  +E+ VISWN+M+ GYSK    R   EL   
Sbjct: 331 CGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRK 389

Query: 352 MREENKVKPDSVTYLAVLSGC 372
           M+ E+KVK + VT L VL  C
Sbjct: 390 MQMEDKVKVNEVTLLNVLPVC 410



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 184/387 (47%), Gaps = 48/387 (12%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   KAL   + M   GLE       +LL+AC   ++L  G+ +H  M++  +    ++
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFI 539

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y +C  +  A+  FD M E+N+V W  MI+ +SQ    F+AL++F +ML S  
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKI 599

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+E +    L +C+      LGK++H   +KS+   H +V  SL+DMYAK G + +++ 
Sbjct: 600 WPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQN 659

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGL 273
           +F+ +  +  V+   +I+GY   G   +AIELF+ +Q  G   + VT+ ++LTA   +GL
Sbjct: 660 IFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGL 719

Query: 274 AALG--HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            A G  +  Q+ S    F I   +     ++DM  + G L                    
Sbjct: 720 VAEGLEYLGQMQS---LFGIKPKLEHYACVVDMLGRAGRLN------------------- 757

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
                       E +EL N + +    KPDS  + ++LS C +    D G  V +++++ 
Sbjct: 758 ------------EALELVNELPD----KPDSRIWSSLLSSCRNYRDLDIGEKVANKLLEL 801

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEA 418
                 + E+Y  + +   R G+  E 
Sbjct: 802 G---PDKAENYVLISNFYARLGKWDEV 825


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/637 (34%), Positives = 361/637 (56%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   +EM   G+ +    Y + L AC    +L  G+++HA +I++  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +   Y+ + LI  Y KC    +A+++F+ +++RN VSWT +I    Q     +++ LF +
Sbjct: 302 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG+Q+HSL +KS     I V +SL+ +YAK G 
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD 421

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  VF  + ERD+VS T++I+ Y+Q+G   +A E F  +     I+           
Sbjct: 422 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQH 481

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + + A   G Q+  H ++  +   V +
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSV 541

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+ I MYSKCG ++ ++++FD ++ + V+SWNAM+ GYS+HGMG++  + F+ M  +  
Sbjct: 542 ANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG- 600

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+   G  ++ +++    G  P +EH+ C+VD+LGRAG + E
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEG-KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 659

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I  MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++L+ +Y+ 
Sbjct: 660 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 719

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  +VR+LM++K + K+PG SW+E++  +H F A D SHP    +  K+ +L  K
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEK 779

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV             +  +  + HSEKLA+ FG++  P   PI ++KNLRIC DC
Sbjct: 780 IAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 828

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V  R+  +RD  RFHH   G+CSCGDYW
Sbjct: 829 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 179/360 (49%), Gaps = 33/360 (9%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP ++ R  ++  Y K   +  A + F++M ER+VVSW  MI+A SQ     EAL L + 
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R     +  T+ + LT+CA  F    GKQ+H+ +I+S  +   YV S+L+++YAK G 
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             EA+ VF  L +R+ VS T +I G  Q     +++ELF +++ E M  +    A++++ 
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS- 328
                 L  G+Q+HS  L+      +V+ NSLI +Y+KCG L  +  VF +MSER ++S 
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 329 ------------------------------WNAMLVGYSKHGMGREVVELFNLMREENKV 358
                                         WNAML  Y +HG   + +++++ M  +  V
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD VTY+ +  GC+  G    G  +    V  K G    +      + M  + GR+ EA
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTV--KAGLILNVSVANAAITMYSKCGRISEA 558



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 186/378 (49%), Gaps = 45/378 (11%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L++  S G L  A      + T+GL       +TLL+A  +   L   +R+    IK   
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIK--- 67

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
            P V     ++  Y K   LSDA ++FD M  R+V SW  ++S Y Q     + L  F+ 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 150 MLRS-DTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDM---- 203
           M RS D+ PN FTF  V+ SC GA G  EL  Q+  L  K +F     V ++L+DM    
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSC-GALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 204 ---------------------------YAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
                                      YAK   I  A   FE + ERDVVS   +I+  +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSY 294
           Q G   EA+ L  ++  +G+  +  TY S LTA + L +LG GKQ+H+ V+R   +I  Y
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY 306

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V   ++LI++Y+KCGS   ++RVF+++ +R  +SW  ++ G  ++    + VELFN MR 
Sbjct: 307 VA--SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 355 ENKVKPDSVTYLAVLSGC 372
           E  +  D      ++SGC
Sbjct: 365 E-LMAIDQFALATLISGC 381



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV------ 317
           A  L +     AL   + +H  ++   + S V LQN+L+  Y  CG+L+ +RR+      
Sbjct: 8   ADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIK 67

Query: 318 --------------------------FDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
                                     FD M  R V SWN ++ GY +     + +E F  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M       P++ T+  V+  C   G  +    +           +P++E    +VDM  R
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVR 185

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            G V  A      +   PT     S+L      Y +D
Sbjct: 186 CGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGID 221


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 338/605 (55%), Gaps = 71/605 (11%)

Query: 99  LIVFYNKCECLS---DARKMFDEMRERNVVSWT--------------------------- 128
           L+  Y KCE L    DARK+ DEM +++ ++WT                           
Sbjct: 200 LVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFD 259

Query: 129 ----AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
               AMIS Y       EA  LF RM+      +EFTF +VL++CA A  F  GK +H  
Sbjct: 260 VVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQ 319

Query: 185 I--IKSNF--ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I  ++ NF  E+ + V ++L+ +Y+K G I  AR +F+ +  +DVVS   I+SGY +   
Sbjct: 320 ITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC 379

Query: 241 DEEAIELFRKLQVEG------MISNYV-------------------------TYASVLTA 269
            ++A+E+F ++  +       M+S YV                         TYA  ++A
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISA 439

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L +L HGKQ+H H+++          N+LI MY++CG++  +  +F  M     +SW
Sbjct: 440 CGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSW 499

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           NAM+    +HG GRE +ELF+ M  E  + PD +++L VL+ C+H G+ D G   F E +
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEG-IYPDRISFLTVLTACNHSGLVDEGFQYF-ESM 557

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
               G  P  +HY  ++D+LGRAGR+GEA + IK MPFEPT +I  ++L  CR   ++++
Sbjct: 558 KRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMEL 617

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G     +L ++ P++ G Y++LSN Y++AGRW D  RVR+LM+++ V K+PG SWIE   
Sbjct: 618 GAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGN 677

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F   D  HP   ++   ++ +  + ++ GYVPD   VL+D++  QKE +L  HSE+
Sbjct: 678 KVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSER 737

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ FGL+  P GA + V+KNLRIC DCH    F+SK  GR++ +RD  RFHH  +G CS
Sbjct: 738 LAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECS 797

Query: 630 CGDYW 634
           CG+YW
Sbjct: 798 CGNYW 802



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
            +SL+  YA AGR+  A   F+ +P+  RD V   A+IS YA+      A+ +FR L   
Sbjct: 91  ATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 255 GMI-SNYVTYASVLTALSGLAALG--HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
           G +  +  ++ ++L+A   L  +   H  Q+   VL+      + + N+L+ +Y KC +L
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 312 TYSR---RVFDNMSERTVISWNAMLVGYSKH----------------------------- 339
             +R   +V D M ++  ++W  M+VGY +                              
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 340 --GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
             GM  E  ELF  M  E +V  D  T+ +VLS C++ G    G +V  +I   +  F P
Sbjct: 271 HSGMVVEAFELFRRMVLE-RVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVP 329

Query: 398 E--IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA---ILGSLLGACRVHYNVDIGEF 452
           E  +     +V +  + G +  A     NM  +   +   IL   + +  +   V++ E 
Sbjct: 330 EAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFE- 388

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
                 E+  +N  +++++ + Y   G  ED  ++   M+ + V
Sbjct: 389 ------EMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDV 426



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   ++AC    +L+ G+++H H+++  +         LI  Y +C  + +A  MF  M 
Sbjct: 433 YAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             + VSW AMISA  Q  H  EAL LF RM+     P+  +F TVLT+C  +   + G Q
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQ 552

Query: 181 IHSLIIKSNF-----ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC-TAIISG 234
                +K +F     E H    + L+D+  +AGRI EAR + + +P     S   AI+SG
Sbjct: 553 YFE-SMKRDFGIIPGEDHY---TRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 353/575 (61%), Gaps = 8/575 (1%)

Query: 65   LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
            L++C + R L  GQ+VH   +K        +   L+  Y  C   S++ ++F+ M E ++
Sbjct: 483  LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDI 542

Query: 125  VSWTAMISAY-SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW +++    S  A + E++ +F  M+RS   PN+ TF  +L++ +     ELGKQ+H+
Sbjct: 543  VSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHA 602

Query: 184  LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDE 242
            +++K        V ++L+  YAK+G +     +F  +   RD VS  ++ISGY   G  +
Sbjct: 603  VVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            E ++    +     + +  T++ VL A + +AAL  G ++H+  +R ++ S VV++++L+
Sbjct: 663  ETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALL 722

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMYSKCG + Y+ +VF++MS++   SWN+M+ GY++HG+G + +E+F  M + N   PD 
Sbjct: 723  DMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEM-QRNGACPDH 781

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            VT+++VLS CSH G+ DRGL  F  + D   G  P IEHY CV+D+LGRAG++ +  E+I
Sbjct: 782  VTFVSVLSACSHAGLVDRGLDYFEMMED--HGILPHIEHYSCVIDLLGRAGKLLKIQEYI 839

Query: 423  KNMPFEPTAAILGSLLGACRVHYN---VDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
              MP +P   I  ++L ACR   +   +D+G+   + L+E+EP+N  NYV+ SN YA+ G
Sbjct: 840  NRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATG 899

Query: 480  RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
            RWED  + R  M   A+ K+ G+SW+ L   +HTF A DRSHP  +E+  K+  L  K K
Sbjct: 900  RWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIK 959

Query: 540  EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             AGYVP     LYD++EE KE++L  HSEKLA+ F L  +    PIR++KNLR+C DCH 
Sbjct: 960  NAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKNLRVCGDCHT 1019

Query: 600  FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              +++S++  R++ LRD  RFHH  +G CSCGDYW
Sbjct: 1020 AFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 176/358 (49%), Gaps = 12/358 (3%)

Query: 74  LRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           L  G+ VH H+++T      + L   L+  Y KC  +  A ++F  +  R+ VSW  +IS
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
              Q      A+  +  M +    P+ F   + L+SCA       G+Q+H   +K   + 
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI----ISGYAQLGLDEEAIELF 248
              V ++L+ MY   G   E+  +F  + E D+VS  +I    +S +A      E++E+F
Sbjct: 510 DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA---ESVEVF 566

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
             +   G+  N VT+ ++L+ALS L+ L  GKQVH+ VL+        + N+L+  Y+K 
Sbjct: 567 SNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKS 626

Query: 309 GSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           G +    ++F +MS  R  +SWN+M+ GY  +G  +E ++   LM   N++  D  T+  
Sbjct: 627 GDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQML-DCCTFSI 685

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           VL+ C+     +RG+ +       +   E ++     ++DM  + GR+  A +   +M
Sbjct: 686 VLNACASVAALERGMEM--HAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSM 741



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 165/324 (50%), Gaps = 16/324 (4%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
           +R+H  ++K      ++L   L+  Y K   L+ AR++FD M ERN VSWT ++S Y   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 138 AHSFEALNLFIRMLRSDTE---PNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFES 192
             + EA  +F  ML   +E   P  FTF +VL +C  AG        Q+H L+ K+ + S
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 193 HIYVGSSLLDMYAK--AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +  V ++L+ MY     G   +A+ VF+  P RD+++  A++S YA+ G       LF  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 251 LQVEG----MISNYVTYASVLTALSGLAALGHG--KQVHSHVLRFEIPSYVVLQNSLIDM 304
           +  +     +  N  T+ S++TA S L++   G   QV + VL+    S + + ++L+  
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSA 314

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           +++ G L  ++ +F N+ ER  ++ N ++VG  K     E V +F   R+   V  D  T
Sbjct: 315 FARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTD--T 372

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEI 388
           ++ +LS  +   + + GL    E+
Sbjct: 373 FVVLLSAVAEFSIPEDGLMRGREV 396



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 162/331 (48%), Gaps = 29/331 (8%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +++H  ++K      +++ + L+++YAK  R+  AR VF+ + ER+ VS T ++SGY   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 239 GLDEEAIELFRKLQVEGMISNY-----VTYASVLTAL--SGLAALGHGKQVHSHVLRFEI 291
           G+ +EA  +F+ +  EG  S +      T+ SVL A   +G   L    QVH  V +   
Sbjct: 136 GITDEAFRVFKAMLWEG--SEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 292 PSYVVLQNSLIDMYSKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            S   + N+LI MY  C  G    +++VFD    R +I+WNA++  Y+K G       LF
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 350 NLMREEN---KVKPDSVTYLAV-----LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             M  ++   +++P+  T+ ++     LS CS G ++     VF  ++  K G   ++  
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQ----VFARVL--KSGSSSDLYV 307

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEI 460
              +V    R G + EA +   N+       + G ++G  + H + + +G F+G R   +
Sbjct: 308 GSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFV 367

Query: 461 EPENAGNYVILSNLYASAGRWED-VTRVREL 490
              N   +V+L +  A     ED + R RE+
Sbjct: 368 --VNTDTFVVLLSAVAEFSIPEDGLMRGREV 396



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +LNAC +   L  G  +HA  I++     V + + L+  Y+KC  +  A K+F+ M 
Sbjct: 683 FSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS 742

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++N  SW +MIS Y++     +AL +F  M R+   P+  TF +VL++C+ A   + G  
Sbjct: 743 QKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLD 802

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD--------VVSCTAII 232
              ++       HI   S ++D+  +AG++ + +     +P +         +V+C    
Sbjct: 803 YFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSK 862

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
            G  ++ L +EA  +  +L+ +  + NYV  ++   A
Sbjct: 863 DG-DRIDLGKEASRMLLELEPQNPV-NYVLASNFYAA 897


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/637 (34%), Positives = 361/637 (56%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   +EM   G+ +    Y + L AC    +L  G+++HA +I++  
Sbjct: 232 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 291

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +   Y+ + LI  Y KC    +A+++F+ +++RN VSWT +I    Q     +++ LF +
Sbjct: 292 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 351

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG+Q+HSL +KS     I V +SL+ +YAK G 
Sbjct: 352 MRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD 411

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  VF  + ERD+VS T++I+ Y+Q+G   +A E F  +     I+           
Sbjct: 412 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQH 471

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + + A   G Q+  H ++  +   V +
Sbjct: 472 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSV 531

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+ I MYSKCG ++ ++++FD ++ + V+SWNAM+ GYS+HGMG++  + F+ M  +  
Sbjct: 532 ANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG- 590

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+   G  ++ +++    G  P +EH+ C+VD+LGRAG + E
Sbjct: 591 AKPDYISYVAVLSGCSHSGLVQEG-KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 649

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I  MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++L+ +Y+ 
Sbjct: 650 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 709

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  +VR+LM++K + K+PG SW+E++  +H F A D SHP    +  K+ +L  K
Sbjct: 710 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 769

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV             +  +  + HSEKLA+ FG++  P   PI ++KNLRIC DC
Sbjct: 770 IAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 818

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V  R+  +RD  RFHH   G+CSCGDYW
Sbjct: 819 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 179/360 (49%), Gaps = 33/360 (9%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP ++ R  ++  Y K   +  A + F++M ER+VVSW  MI+A SQ     EAL L + 
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 250

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R     +  T+ + LT+CA  F    GKQ+H+ +I+S  +   YV S+L+++YAK G 
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 310

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             EA+ VF  L +R+ VS T +I G  Q     +++ELF +++ E M  +    A++++ 
Sbjct: 311 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 370

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS- 328
                 L  G+Q+HS  L+      +V+ NSLI +Y+KCG L  +  VF +MSER ++S 
Sbjct: 371 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430

Query: 329 ------------------------------WNAMLVGYSKHGMGREVVELFNLMREENKV 358
                                         WNAML  Y +HG   + +++++ M  +  V
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD VTY+ +  GC+  G    G  +    V  K G    +      + M  + GR+ EA
Sbjct: 491 TPDWVTYVTLFRGCADIGANKLGDQIIGHTV--KAGLILNVSVANAAITMYSKCGRISEA 548



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 45/349 (12%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF-DEMRERN 123
           L +C ++  L G + +H  ++       V+L+  L+  Y  C  LSDAR++   +++E N
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF------ATVLTSCAGAFGF-E 176
           V++   M++ Y+++    +A  LF RM R D              A    SC GA G  E
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSC-GALGCRE 145

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDM-------------------------------YA 205
           L  Q+  L  K +F     V ++L+DM                               YA
Sbjct: 146 LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYA 205

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K   I  A   FE + ERDVVS   +I+  +Q G   EA+ L  ++  +G+  +  TY S
Sbjct: 206 KLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTS 265

Query: 266 VLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            LTA + L +LG GKQ+H+ V+R   +I  YV   ++LI++Y+KCGS   ++RVF+++ +
Sbjct: 266 SLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSLQD 323

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
           R  +SW  ++ G  ++    + VELFN MR E  +  D      ++SGC
Sbjct: 324 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAE-LMAIDQFALATLISGC 371



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF-DNMS 322
           A  L +     AL   + +H  ++   + S V LQN+L+  Y  CG+L+ +RR+   ++ 
Sbjct: 24  ADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIK 83

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV---TYLAVLSGCSHGGMED 379
           E  VI+ N M+ GY+K G   +  ELF+ M   +    +++   T     S  S G +  
Sbjct: 84  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 380 RGLAVFHEIVDCKDGF--EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
           R LA     +  K  F  +P++E    +VDM  R G V  A      +   PT     S+
Sbjct: 144 RELAPQLLGLFWKFDFWGDPDVE--TALVDMFVRCGYVDFASRLFSQIE-RPTIFCRNSM 200

Query: 438 LGACRVHYNVD 448
           L      Y +D
Sbjct: 201 LAGYAKLYGID 211


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 346/578 (59%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           YD L+ AC+  +++R  +RV+  +I   + P  Y+  R+++ + KC  + DAR++FDEM 
Sbjct: 126 YDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMP 185

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN+ S+ ++IS +    +  EA  LF  M    ++    TFA +L + AG +   +GKQ
Sbjct: 186 ERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYVGKQ 245

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K     + +V   L+DMY+K G I +AR  FE +PE+  V+   I++GYA  G 
Sbjct: 246 LHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGY 305

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ L  +++  G+  +  T + ++   + LA L   KQ H+ ++R    S +V   +
Sbjct: 306 SEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANTA 365

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+D YSK G +  +R VFD +  + +ISWNA++ GY+ HG G + V LF  M    KV P
Sbjct: 366 LVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAA-KVAP 424

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT+LAVLS C++ G+ ++G  +F  + +   G +P   HY C++++LGR G + EA+ 
Sbjct: 425 NHVTFLAVLSACAYSGLSEQGWEIFLSMSEVH-GIKPRAMHYACMIELLGRDGLLDEAIA 483

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+  P + T  +  +LL ACR+  N+++G  V ++L  + PE  GNYV+L N+Y S G+
Sbjct: 484 FIRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNSMGK 543

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDR----SHPMREELSAKVKQLSV 536
             +   V E ++ K ++  P  +W+E+    H+F + DR    +  ++ E+  KV +L  
Sbjct: 544 TAEAAGVLETLESKGLSMIPACTWVEVGDQTHSFLSGDRFDSYNETVKREVYQKVDELME 603

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           +  E GY+ +   +L DVDE+++E+V   HSEKLA+ +GL+ TPE  P+++ +N RIC D
Sbjct: 604 EIYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEWNPLQITQNHRICKD 663

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   +F+S V GR++ +RD +RFHH  EG CSCG YW
Sbjct: 664 CHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 4/286 (1%)

Query: 142 EALNLF-IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
           EA  LF I  +R   +    T+  ++ +C         K+++  II + FE   Y+ + +
Sbjct: 105 EAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRI 164

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           L M+ K G I +AR +F+ +PER++ S  +IISG+   G  EEA ELF+ +  E      
Sbjct: 165 LLMHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCET 224

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T+A +L A +GL ++  GKQ+H   L+  +     +   LIDMYSKCG +  +R  F++
Sbjct: 225 HTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFES 284

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M E+T ++WN ++ GY+ HG   E + L   MR+   V  D  T   ++   +     + 
Sbjct: 285 MPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSG-VSMDQFTLSIMIRISTRLAKLEL 343

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
                  ++  + GFE EI     +VD   + GRV  A      +P
Sbjct: 344 TKQAHASLI--RSGFESEIVANTALVDFYSKWGRVDTARYVFDKLP 387



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM   G+ M       ++        L   ++ HA +I++ +   +   T L+ FY+K
Sbjct: 313 LYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANTALVDFYSK 372

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              +  AR +FD++  +N++SW A++  Y+      +A+ LF RM+ +   PN  TF  V
Sbjct: 373 WGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVTFLAV 432

Query: 166 LTSCAGAFGFELGKQI 181
           L++CA +   E G +I
Sbjct: 433 LSACAYSGLSEQGWEI 448


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 330/559 (59%), Gaps = 2/559 (0%)

Query: 77  GQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G ++H+  I+  Y P   ++    +  Y K   L  AR +F EM  RNVV+W A+++   
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 E +  +  +  +   PN  +      +CAGA    LG+Q H  ++K  FE  + 
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 256

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V +S++D Y K     +AR VF+ +  R+ VS  ++++ YAQ G +EEA   +   +  G
Sbjct: 257 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 316

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
                   +S LT  +GL  L  G+ +H+  +R  I + + + ++L+DMY KCG +  + 
Sbjct: 317 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 376

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++F    +R +++WNAM+ GY+  G  +  + +F+ M    +  P+ +T + V++ CS G
Sbjct: 377 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 436

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G  +F E +  + G EP  EHY CVVD+LGRAG   +A E I+ MP  P+ ++ G
Sbjct: 437 GLTKDGYELF-ETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 495

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGAC++H   ++G    ++L E++P+++GN+V+LSN++ASAGRW + T +R+ MK   
Sbjct: 496 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 555

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + KDPG SW+    ++H F A D  H M  E+ A + +L  + + AGY+PD    LYD++
Sbjct: 556 IKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLE 615

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+KE  +  HSEKLAL FGLI  P G PIR++KNLRICVDCH   KF+S + GR++ +R
Sbjct: 616 EEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVR 675

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFHH  +  CSCGDYW
Sbjct: 676 DNNRFHHFKQYQCSCGDYW 694



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 156/297 (52%), Gaps = 9/297 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
              NAC     L  G++ H  ++K  +   V +   ++ FY KC C   AR +FD M  R
Sbjct: 225 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR 284

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N VSW +M++AY+Q     EA   ++   RS  EP +F  ++ LT+CAG  G  LG+ +H
Sbjct: 285 NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALH 344

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           ++ ++S  +++I+V S+L+DMY K G + +A  +F   P+R++V+  A+I GYA +G  +
Sbjct: 345 AVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQ 404

Query: 243 EAIELFRKLQVEGMIS-NYVTYASVLTALS--GLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            A+ +F  +   G  + NY+T  +V+T+ S  GL   G+ +   +   RF I        
Sbjct: 405 NALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY-ELFETMRERFGIEPRTEHYA 463

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHG---MGREVVE-LFNL 351
            ++D+  + G    +  V   M  R  IS W A+L     HG   +GR   E LF L
Sbjct: 464 CVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFEL 520



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 195/442 (44%), Gaps = 23/442 (5%)

Query: 65  LNACVNQRTLRGGQRVHAH---MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
             + +  R+ R G+  HA    +I     P  ++   L+  Y+K +  + A         
Sbjct: 22  FESAIASRSPRLGRAAHARALRLIAPALSP--FICAHLVNLYSKLDLPAAAAAALASDPH 79

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE-LGKQ 180
             VVS+TA IS  +Q      AL+ F  MLR    PN+FTF +   + A A     +G Q
Sbjct: 80  PTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQ 139

Query: 181 IHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           IHSL I+  +     +V  + LDMY K GR+  AR +F  +P R+VV+  A+++     G
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              E IE +  L+  G + N V+  +   A +G   L  G+Q H  V++      V + N
Sbjct: 200 RPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLN 259

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           S++D Y KC     +R VFD M  R  +SW +M+  Y+++G   E    +   R   + +
Sbjct: 260 SMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE-E 318

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P      + L+ C+  G+    L      V  +   +  I     +VDM G+ G V +A 
Sbjct: 319 PTDFMVSSALTTCA--GLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 376

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL----MEIEPENAGNYVILSNLY 475
           +     P +       +++G         IG+     L    M    E A NY+ L N+ 
Sbjct: 377 QIFYETP-QRNLVTWNAMIGG-----YAHIGDAQNALLVFDDMIRSGETAPNYITLVNVI 430

Query: 476 ASAGRW---EDVTRVRELMKEK 494
            S  R    +D   + E M+E+
Sbjct: 431 TSCSRGGLTKDGYELFETMRER 452


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 338/566 (59%), Gaps = 21/566 (3%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFDEMRERNVVSWTA 129
           TL+  +++ A+ IKT Y+    + T+ I F         +  A ++FD++ + N+V +  
Sbjct: 38  TLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNT 97

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           M   Y++       +  F R LR             L S   A     GKQ+H   +K  
Sbjct: 98  MARGYARLNDPLRMITHFRRCLR-------------LVSKVKALA--EGKQLHCFAVKLG 142

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++YV  +L++MY   G I  +R VF+ + E  VV+  AII   A+     EA+ LFR
Sbjct: 143 VSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFR 202

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +LQ  G+    VT   VL++ + L +L  G+ +H +V ++    YV +  +LIDMY+KCG
Sbjct: 203 ELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCG 262

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           SL  +  VF +M +R   +W+A++V Y+ HG G + + + N M++E KV+PD +T+L +L
Sbjct: 263 SLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKE-KVQPDEITFLGIL 321

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             CSH G+ + G   FH + + + G  P I+HYGC+VD+LGRAGR+ EA +FI  +P +P
Sbjct: 322 YACSHNGLVEEGFEYFHGMTN-EYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKP 380

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
           T  +  +LL AC  H NV++G+ V +R+ E++  + G+YVI SNL A  G+W+DV  +R+
Sbjct: 381 TPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRK 440

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
            M +K   K PG S IE++ ++H F A +  H     L   + +L  + K AGYVPD S 
Sbjct: 441 TMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSL 500

Query: 550 VLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVY 608
           V Y D+++E+KE +L  HSEKLA+TFGL+ TP G  IRV+KNLR+C DCHN AKF+S ++
Sbjct: 501 VFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIF 560

Query: 609 GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GR++ LRD  RFHH  +G CSCGDYW
Sbjct: 561 GRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 5/281 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L  G+++H   +K      +Y+   LI  Y  C  +  +R++FD++ E  VV++ A+I
Sbjct: 126 KALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAII 185

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
            + ++   + EAL LF  +     +P + T   VL+SCA     +LG+ +H  + K  F+
Sbjct: 186 MSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFD 245

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            ++ V ++L+DMYAK G + +A  VF  +P+RD  + +AII  YA  G   +AI +  ++
Sbjct: 246 RYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEM 305

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           + E +  + +T+  +L A S    +  G +  H     + I   +     ++D+  + G 
Sbjct: 306 KKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGR 365

Query: 311 LTYSRRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVE 347
           L  + +  D +  + T I W  +L   S HG   MG+ V+E
Sbjct: 366 LDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIE 406



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           + +L  N +  +AL    E+  +GL+        +L++C    +L  G+ +H ++ K  +
Sbjct: 185 IMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGF 244

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V + T LI  Y KC  L DA  +F +M +R+  +W+A+I AY+     F+A+++   
Sbjct: 245 DRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNE 304

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M +   +P+E TF  +L +C+     E G +  H +  +      I     ++D+  +AG
Sbjct: 305 MKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAG 364

Query: 209 RIHEARGVFECLP 221
           R+ EA    + LP
Sbjct: 365 RLDEAYKFIDELP 377


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 339/584 (58%), Gaps = 64/584 (10%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A K+F  +   NV  W  +I    +    F+A+  + RM+  D  PN+FT+ T+  +C+ 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSV 144

Query: 172 AFGFELGKQIHSLIIKSNF------------------------------ESHIYVGSSLL 201
           A   + G+QIH  ++K                                 ES +   ++++
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMI 204

Query: 202 DMYAKAGRIHEARGVFECLP-------------------------------ERDVVSCTA 230
           D Y K G +  A+G+F  +P                               ERD +S ++
Sbjct: 205 DGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSS 264

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           ++ GY   G  +EA+E+F+++Q E         +SVL A S + A+  G+ VH+++ R  
Sbjct: 265 MVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS 324

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           I    VL  +L+DMY+KCG L     VF+ M ER + +WNAM+ G + HG   + +ELF+
Sbjct: 325 IKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS 384

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            + +E ++KP+ +T + VL+ C+H G  D+GL +F  + +   G +PE+EHYGC+VD+LG
Sbjct: 385 KL-QEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY-GVDPELEHYGCMVDLLG 442

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R+G   EA + I +MP +P AA+ G+LLGACR+H N D+ E VG+ L+E+EP+N+G YV+
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVL 502

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSN+YA  GR++DV+++R+LMK + +   PG S ++L+  +H F   D SHP  +E+  K
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           +K +  + + AG+ PD S VL+D+DEE+KE  +  HSEKLA+ FGLI T  G  I ++KN
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKN 622

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH+  K +S+++ R++ +RD+ R+HH   GTCSC D+W
Sbjct: 623 LRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 10/238 (4%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L DARK+FDEM ER+ +SW++M+  Y       EAL +F +M R +T P  F  ++VL +
Sbjct: 244 LGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+     + G+ +H+ + +++ +    +G++LLDMYAK GR+     VFE + ER++ + 
Sbjct: 304 CSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTW 363

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+I G A  G  E+A+ELF KLQ   M  N +T   VLTA +    +  G ++   +  
Sbjct: 364 NAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMRE 423

Query: 289 F-----EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG 340
           F     E+  Y      ++D+  + G  + +  + ++M  +     W A+L     HG
Sbjct: 424 FYGVDPELEHY----GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 21/324 (6%)

Query: 180 QIHSLIIKS-NFESHIYVGSSLLDMYAKA--GRIHEARGVFECLPERDVVSCTAIISGYA 236
           Q+H+L+++S +F+ H YV  +LL  YA         A  VF  +P  +V     +I G  
Sbjct: 51  QLHALVLRSGHFQDH-YVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCL 109

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +     +AI  + ++ ++    N  TY ++  A S   A+  G+Q+H HV++  I S V 
Sbjct: 110 ENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           ++++ I MY+  G L  +R++F +  E  V+ WN M+ GY K G+      LF  M  +N
Sbjct: 169 IKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
                  ++  +++G + GG       +F E+ +       EI  +  +VD    AGR  
Sbjct: 228 -----IGSWNVMINGLAKGGNLGDARKLFDEMSE-----RDEIS-WSSMVDGYISAGRYK 276

Query: 417 EALEFIKNMPFE---PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILS 472
           EALE  + M  E   P   IL S+L AC     +D G +V   L     + +A     L 
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 473 NLYASAGRWEDVTRVRELMKEKAV 496
           ++YA  GR +    V E MKE+ +
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREI 360



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC N   +  G+ VHA++ +   +    L T L+  Y KC  L    ++F+EM+ER
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            + +W AMI   +    + +AL LF ++     +PN  T   VLT+CA A   + G +I 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 183 SLI-----IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +     +    E +      ++D+  ++G   EA  +   +P +   +    + G  +
Sbjct: 419 QTMREFYGVDPELEHY----GCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACR 474

Query: 238 LGLDEEAIELFRKLQVE 254
           +  + +  E   K+ +E
Sbjct: 475 IHGNFDLAERVGKILLE 491


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/600 (38%), Positives = 368/600 (61%), Gaps = 14/600 (2%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
           +  +EM    L+M       ++ AC +N   +R   ++HA  + T     V +   LI  
Sbjct: 126 QLFLEMREAFLDMDGFTLSGIITACGINVGLIR---QLHALSVVTGLDSYVSVGNALITS 182

Query: 103 YNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
           Y+K   L +AR++F  + E R+ VSW +M+ AY Q     +AL L++ M       + FT
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR-IHEARGVFECL 220
            A+VLT+         G Q H+ +IKS +  + +VGS L+D+Y+K G  + + R VF+ +
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 221 PERDVVSCTAIISGYAQL-GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
              D+V    +ISGY+    L +EA+E FR+LQV G   +  +   V++A S +++   G
Sbjct: 303 SNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 280 KQVHSHVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           +QVH   L+ +IPS  + + N+LI MYSKCG+L  ++ +FD M E   +S+N+M+ GY++
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HGMG + + LF  M E     P ++T+++VL+ C+H G  + G  ++  ++  K G EPE
Sbjct: 423 HGMGFQSLHLFQRMLEMG-FTPTNITFISVLAACAHTGRVEDG-KIYFNMMKQKFGIEPE 480

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             H+ C++D+LGRAG++ EA   I+ +PF+P      +LLGACR+H NV++      RL+
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLL 540

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           +++P NA  YV+L+N+Y+  GR +D   VR+LM+++ V K PG SWIE+++ +H F A D
Sbjct: 541 QLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAED 600

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE---EQKEKVLLG-HSEKLALTF 574
             HPM +++   ++++  K K+ GY P++   L   D+   +++E++ LG HSEKLA++F
Sbjct: 601 TFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSF 660

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GL+ T EG PI V KNLRICVDCHN  K++S+V  R++++RD +RFH   +G CSCG YW
Sbjct: 661 GLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 34/221 (15%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF--- 217
            F   L +C        GK +H+L IKS   +  Y+ +  L +Y+K  R+  AR VF   
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 218 -EC---------------------------LPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +C                           +P+ D VS   +I+ YA+ G  + A +LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++   +  +  T + ++TA      +G  +Q+H+  +   + SYV + N+LI  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 310 SLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELF 349
            L  +RR+F  +SE R  +SWN+M+V Y +H  G + +EL+
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELY 228


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/637 (34%), Positives = 361/637 (56%), Gaps = 48/637 (7%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  +G++ +AL   +EM   G+ +    Y + L AC    +L  G+++HA +I++  
Sbjct: 242 IAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP 301

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           +   Y+ + LI  Y KC    +A+++F+ +++RN VSWT +I    Q     +++ LF +
Sbjct: 302 QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       ++F  AT+++ C       LG+Q+HSL +KS     I V +SL+ +YAK G 
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGD 421

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------- 258
           +  A  VF  + ERD+VS T++I+ Y+Q+G   +A E F  +     I+           
Sbjct: 422 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQH 481

Query: 259 ---------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                                ++VTY ++    + + A   G Q+  H ++  +   V +
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSV 541

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+ I MYSKCG ++ ++++FD ++ + V+SWNAM+ GYS+HGMG++  + F+ M  +  
Sbjct: 542 ANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKG- 600

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            KPD ++Y+AVLSGCSH G+   G  ++ +++    G  P +EH+ C+VD+LGRAG + E
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEG-KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 659

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I  MP +PTA + G+LL AC++H N ++ E   + + E++  ++G+Y++L+ +Y+ 
Sbjct: 660 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 719

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AG+ +D  +VR+LM++K + K+PG SW+E++  +H F A D SHP    +  K+ +L  K
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 779

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
               GYV             +  +  + HSEKLA+ FG++  P   PI ++KNLRIC DC
Sbjct: 780 IAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDC 828

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +S V  R+  +RD  RFHH   G+CSCGDYW
Sbjct: 829 HTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 179/360 (49%), Gaps = 33/360 (9%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP ++ R  ++  Y K   +  A + F++M ER+VVSW  MI+A SQ     EAL L + 
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R     +  T+ + LT+CA  F    GKQ+H+ +I+S  +   YV S+L+++YAK G 
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
             EA+ VF  L +R+ VS T +I G  Q     +++ELF +++ E M  +    A++++ 
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS- 328
                 L  G+Q+HS  L+      +V+ NSLI +Y+KCG L  +  VF +MSER ++S 
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 329 ------------------------------WNAMLVGYSKHGMGREVVELFNLMREENKV 358
                                         WNAML  Y +HG   + +++++ M  +  V
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD VTY+ +  GC+  G    G  +    V  K G    +      + M  + GR+ EA
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTV--KAGLILNVSVANAAITMYSKCGRISEA 558



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 187/378 (49%), Gaps = 45/378 (11%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L++  S G L  A      + T+GL       +TLL+A ++   L   +R+    IK   
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIK--- 67

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
            P V     ++  Y K   LSDA ++FD M  R+V SW  ++S Y Q     + L  F+ 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 150 MLRS-DTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDM---- 203
           M RS D+ PN FTF  V+ SC GA G  EL  Q+  L  K +F     V ++L+DM    
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSC-GALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 204 ---------------------------YAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
                                      YAK   I  A   FE + ERDVVS   +I+  +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSY 294
           Q G   EA+ L  ++  +G+  +  TY S LTA + L +LG GKQ+H+ V+R   +I  Y
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY 306

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V   ++LI++Y+KCGS   ++RVF+++ +R  +SW  ++ G  ++    + VELFN MR 
Sbjct: 307 VA--SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 355 ENKVKPDSVTYLAVLSGC 372
           E  +  D      ++SGC
Sbjct: 365 E-LMAIDQFALATLISGC 381



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV------ 317
           A  L +     AL   + +H  ++   + S V LQN+L+  Y  CG+L+ +RR+      
Sbjct: 8   ADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIK 67

Query: 318 --------------------------FDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
                                     FD M  R V SWN ++ GY +     + +E F  
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M       P++ T+  V+  C   G  +    +           +P++E    +VDM  R
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVR 185

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            G V  A      +   PT     S+L      Y +D
Sbjct: 186 CGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGID 221


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 349/603 (57%), Gaps = 34/603 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +++AC     L  G++V+A +  +       + + L+  Y KC  +  A+++FDE    N
Sbjct: 242 VISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASN 301

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +    AM S Y ++  + EAL +F  M+ S   P+  +  + ++SC+       GK  H 
Sbjct: 302 LDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHG 361

Query: 184 LIIKSNFESHIYVGSSLLDMYAKA-------------------------------GRIHE 212
            ++++ FES   + ++L+DMY K                                G +  
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALS 271
           A   FE +PE+++VS   IISG  Q  L EEAIE+F  +Q  EG+ ++ VT  S+ +A  
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACG 481

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL   K ++ ++ +  I   V L  +L+DM+S+CG    +  +F++++ R V +W A
Sbjct: 482 HLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTA 541

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
            +   +  G     +ELF+ M E+  +KPD V ++  L+ CSHGG+  +G  +F+ ++  
Sbjct: 542 AIGAMAMAGNAERAIELFDDMIEQG-LKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE  HYGC+VD+LGRAG + EA++ I++MP EP   I  SLL ACRV  NV++  
Sbjct: 601 H-GVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAA 659

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           +  +++  + PE  G+YV+LSN+YASAGRW D+ +VR  MKEK + K PG S I++    
Sbjct: 660 YAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKT 719

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F + D SHP    + A + ++S +    G+VPD+S VL DVDE++K  +L  HSEKLA
Sbjct: 720 HEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLA 779

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + +GLI + +G  IR++KNLR+C DCH+FAKF SKVY R++ LRD NRFH+I +G CSCG
Sbjct: 780 MAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCG 839

Query: 632 DYW 634
           D+W
Sbjct: 840 DFW 842



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 206/400 (51%), Gaps = 34/400 (8%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC   R    G ++H  ++K  Y   ++++  L+ FY +C  L  ARK+FDEM ERNV
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSWT+MI  Y+++  + +A++LF RM+R +   PN  T   V+++CA     E G+++++
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I  S  E +  + S+L+DMY K   I  A+ +F+     ++  C A+ S Y + GL  E
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ +F  +   G+  + ++  S +++ S L  +  GK  H +VLR    S+  + N+LID
Sbjct: 321 ALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG----------------------- 340
           MY KC     + R+FD MS +TV++WN+++ GY ++G                       
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 341 --------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
                   +  E +E+F  M+ +  V  D VT +++ S C H G  D    +++ I   K
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE--K 498

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           +G + ++     +VDM  R G    A+    ++     +A
Sbjct: 499 NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 4/194 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++ +AC +   L   + ++ ++ K   +  V L T L+  +++C     A  +F+ +  R
Sbjct: 475 SIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +WTA I A +   ++  A+ LF  M+    +P+   F   LT+C+     + GK+I 
Sbjct: 535 DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIF 594

Query: 183 SLIIKSNFES--HIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLG 239
             ++K +  S   ++ G  ++D+  +AG + EA  + E +P E + V   ++++     G
Sbjct: 595 YSMLKLHGVSPEDVHYG-CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653

Query: 240 LDEEAIELFRKLQV 253
             E A     K+QV
Sbjct: 654 NVEMAAYAAEKIQV 667



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 310 SLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           SL++++ VF+N  S  T   +N+++ GY+  G+  E + LF L    + + PD  T+   
Sbjct: 82  SLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLF-LRMMNSGISPDKYTFPFG 140

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           LS C+    +  G+ +   IV  K G+  ++     +V      G +  A +    M   
Sbjct: 141 LSACAKSRAKGNGIQIHGLIV--KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198

Query: 429 PTAAILGSLLGACRVHYNVDIGE--FVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
              +    + G  R  +  D  +  F   R  E+ P    N V +  + ++  + ED+
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTP----NSVTMVCVISACAKLEDL 252


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 324/527 (61%), Gaps = 16/527 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFT--FATVLTS 168
           AR++F  M  R+VVSW  M+S  S+     EA  +F+ M +R+    N     FA     
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 207

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A    F    +    ++           ++++  Y   G + +A   FE +P R++VS 
Sbjct: 208 SAAEEWFRNAPEKGDAVL----------WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSW 257

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVL 287
            A+++GY +    ++A+ LFR +  E  +  N  T +SVL   S L+ALG GKQ+H   +
Sbjct: 258 NAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCM 317

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  +   + +  SL+ MY KCG L+ + ++F  M  R V++WNAM+ GY++HG G+E + 
Sbjct: 318 KLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAIN 377

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M++E  V+P+ +T++AVL+ C H G+ D G+  F  + +   G EP ++HY C+VD
Sbjct: 378 LFERMKDEG-VEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELY-GIEPRVDHYSCMVD 435

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +L RAG++  A++ I++MPFEP  +  G+LL ACRV+ N++  E    +L+E +P++AG 
Sbjct: 436 LLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGA 495

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV L+N+YA A +W+DV+RVR  MK+ AV K PG SWIE+  ++H F ++DR HP    +
Sbjct: 496 YVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLI 555

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             K+ QL+ + K  GYVPD+  VL+DVDE  K ++L+ HSEKLA++FGLI T  G  +R+
Sbjct: 556 HEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRI 615

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCHN AK +SK+  R++ LRD  RFHH   G CSCGDYW
Sbjct: 616 FKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-S 153
           L T ++  Y     +  A + F+ M  RN+VSW A+++ Y + +H+ +AL LF  M+R +
Sbjct: 225 LWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA 284

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           + +PN  T ++VL  C+       GKQIH   +K     ++ VG+SL+ MY K G +  A
Sbjct: 285 NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 344

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--S 271
             +F  +  RDVV+  A+ISGYAQ G  +EAI LF +++ EG+  N++T+ +VLTA   +
Sbjct: 345 CKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHT 404

Query: 272 GLAALG 277
           GL   G
Sbjct: 405 GLCDFG 410



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G+++H   +K      + + T L+  Y KC  LS A K+F EM  R
Sbjct: 295 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 354

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA----FGFELG 178
           +VV+W AMIS Y+Q     EA+NLF RM     EPN  TF  VLT+C       FG    
Sbjct: 355 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCF 414

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + +  L      E  +   S ++D+  +AG++  A  +   +P
Sbjct: 415 EGMQELY---GIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 262 TYASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           T A+    L+G A ALG          R   P   V  N+L+  +   G    +RR+F +
Sbjct: 96  TTATYNCLLAGYARALGRLADARHLFDRIPTPD-AVSYNTLLSCHFASGDADGARRLFAS 154

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG--CSHG--- 375
           M  R V+SWN M+ G SK G   E   +F  M   N     SV++ A++SG  CS     
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN-----SVSWNAMVSGFACSRDMSA 209

Query: 376 ------GMEDRGLAVFH-----------EIVDCKDGFEP----EIEHYGCVVDMLGRAGR 414
                    ++G AV              +V   + FE      +  +  VV    +   
Sbjct: 210 AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSH 269

Query: 415 VGEALEFIKNMPFE----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
             +AL   + M  E    P A+ L S+L  C     +  G+ + Q  M++
Sbjct: 270 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 319


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 327/561 (58%), Gaps = 2/561 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           LR G+++HA  +K       ++ T L+  Y KC  L  A+++FDEM   + V WTA+I+A
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 146

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y       EA+++      +   P+ FT   VLT+CA       G+ +     +      
Sbjct: 147 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 206

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V ++ +D+Y K G + +AR VF+ +  +D V+  A++ GYA  G   EA++LF  +Q 
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 266

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           EGM  +    A  L+A + L AL  G+Q    V   E     VL  +LIDMY+KCGS   
Sbjct: 267 EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 326

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +  VF  M ++ +I WNAM++G    G  +    L   M E++ VK +  T++ +L  C+
Sbjct: 327 AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM-EKSGVKLNDNTFIGLLCSCT 385

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+   G   FH +        P IEHYGC+VD+L RAG + EA + + +MP    A I
Sbjct: 386 HTGLIQDGRRYFHNMTKLYH-ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 444

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
           LG+LLG C++H N ++ E V ++L+ +EP N+GNYV+LSN+Y++ GRWED  ++R  MK 
Sbjct: 445 LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 504

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K V K P  SW+E +  +H F   D+SHP+ +++  K+ +L ++ K  GY P    V++D
Sbjct: 505 KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 564

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
           V++E+KE  L+ HSEKLA+ F L+ T  G  IRV KNLR+C DCH   K VS++  R++ 
Sbjct: 565 VEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREII 624

Query: 614 LRDKNRFHHIVEGTCSCGDYW 634
           +RD NRFH   +G+CSC DYW
Sbjct: 625 VRDNNRFHCFRDGSCSCNDYW 645


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 339/568 (59%), Gaps = 5/568 (0%)

Query: 69  VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
            + R+LR G ++H  +IK  +     +   LI FY+K      + K+FD    ++  +W+
Sbjct: 18  THTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWS 77

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           ++IS+++Q      AL  F RMLR    P++ T  T   S A      L   +H+L +K+
Sbjct: 78  SVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKT 137

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
                ++VGSSL+D YAK G ++ AR VF+ +P ++VVS + +I GY+Q+GLDEEA+ LF
Sbjct: 138 AHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLF 197

Query: 249 RKL--QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           ++   Q   +  N  T +SVL   S       GKQVH    +    S   + +SLI +YS
Sbjct: 198 KRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYS 257

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           KCG +    +VF+ +  R +  WNAML+  ++H       ELF  M E   VKP+ +T+L
Sbjct: 258 KCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEM-ERVGVKPNFITFL 316

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            +L  CSH G+ ++G   F  + +   G EP  +HY  +VD+LGRAG++ EA+  IK MP
Sbjct: 317 CLLYACSHAGLVEKGEHCFGLMKE--HGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMP 374

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486
            +PT ++ G+LL  CR+H N ++  FV  ++ E+   ++G  V+LSN YA+AGRWE+  R
Sbjct: 375 MQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAAR 434

Query: 487 VRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
            R++M+++ + K+ G SW+E    +HTF A DRSH    E+  K+++L  +  +AGYV D
Sbjct: 435 ARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVAD 494

Query: 547 MSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSK 606
            S VL +VD ++K + +  HSE+LA+ FGLI  P   PIRV+KNLR+C DCH   KF+SK
Sbjct: 495 TSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISK 554

Query: 607 VYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             GR + +RD NRFH   +G C+CGDYW
Sbjct: 555 CTGRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C        G++VH    KT +    ++ + LI  Y+KC  +    K+F+E++ R
Sbjct: 216 SVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVR 275

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+  W AM+ A +Q AH+     LF  M R   +PN  TF  +L +C+ A   E G+   
Sbjct: 276 NLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCF 335

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            L+ +   E      ++L+D+  +AG++ EA  V + +P
Sbjct: 336 GLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMP 374


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 362/637 (56%), Gaps = 29/637 (4%)

Query: 11  FSSLTFTQQQL--------TVPSFPPNPQNLKTL----CSNGQLTKALIEMATLGLEMRF 58
            S L+  +Q L        ++P FPP+  +  +L      +G L  A I +     E   
Sbjct: 86  ISGLSLRRQTLPDAAAALASIP-FPPSVVSFTSLLRGYVRHGLLADA-IRLFQQMPERNH 143

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
             Y  LL   ++   +   +R+   M        V   T ++  Y +   +++AR +FDE
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RNVVSWTAMIS Y+Q       +NL  ++     E NE ++  +L     A   E  
Sbjct: 200 MPKRNVVSWTAMISGYAQNGE----VNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            ++ + +     E  +   ++++  + + G +  A+ VFE + ERD  + +A+I  Y Q 
Sbjct: 256 AELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
               EA+  FR++   G+  NY +  S+LT  + LA L +G++VH+ +LR      V   
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV 371

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++LI MY KCG+L  ++RVF     + ++ WN+M+ GY++HG+G + + +F+ MR    +
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAG-M 430

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +TY+  L+ CS+ G    G  +F+ +        P  EHY C+VD+LGR+G V EA
Sbjct: 431 SPDGITYIGALTACSYTGKVKEGREIFNSMT-VNSSIRPGAEHYSCMVDLLGRSGLVEEA 489

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + IKNMP EP A I G+L+GACR+H N +I EF  ++L+E+EP NAG YV+LS++Y S 
Sbjct: 490 FDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSV 549

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD-RSHPMREELSAKVKQLSVK 537
           GRWED +++R+ +  + + K PG SWIE D+ +H F + D  +HP    +   +++L   
Sbjct: 550 GRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGL 609

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             E+GY  D S VL+D+DEEQK   L  HSE+ A+ +GL+  PEG PIRV+KNLR+C DC
Sbjct: 610 LMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDC 669

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K ++K+  R++ LRD NRFHH  +G CSC DYW
Sbjct: 670 HSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 77/315 (24%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM----------------LR 152
           +  AR  F+ M  R   S+ A+++ Y +      AL LF RM                LR
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 153 SDTEPNEFTFATVLTSCAGAFGFE---LGKQIHSLIIKS----------NFESHIYVGSS 199
             T P+       +        F     G   H L+  +          N  S+  +   
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD    AGR++EAR +F+ +P+RDVV+ TA++SGY Q G   EA  LF ++    ++S 
Sbjct: 153 LLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS- 207

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
                                                   ++I  Y++ G +  +R++F+
Sbjct: 208 --------------------------------------WTAMISGYAQNGEVNLARKLFE 229

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M ER  +SW AMLVGY + G   +  ELFN M E      +     A++ G    GM D
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN-----AMMVGFGQRGMVD 284

Query: 380 RGLAVFHEIVDCKDG 394
               VF ++ +  DG
Sbjct: 285 AAKTVFEKMCERDDG 299



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 118/270 (43%), Gaps = 56/270 (20%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           A+AG I  AR  FE +P R   S  A+++GY +  L + A+ LFR++    + S    Y 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS----YN 83

Query: 265 SVLTALS--------GLAALG--------------------HGKQVHSHVLRFEIP---- 292
           ++++ LS          AAL                     HG    +  L  ++P    
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 293 -SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            SY VL   L+D     G +  +RR+FD M +R V++W AML GY + G   E   LF+ 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG- 410
           M + N      V++ A++SG +  G  +    +F  +        PE         ++G 
Sbjct: 200 MPKRN-----VVSWTAMISGYAQNGEVNLARKLFEVM--------PERNEVSWTAMLVGY 246

Query: 411 -RAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            +AG V +A E    MP  P AA    ++G
Sbjct: 247 IQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 104/282 (36%), Gaps = 55/282 (19%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-- 356
           N+ I   ++ G++  +R  F+ M  RT  S+NA+L GY ++ +    + LF  M   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 357 --------------------------KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                                        P  V++ ++L G    G+    + +F ++  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 391 CKDGFEPEIEH--YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                 PE  H  Y  ++  L  AGRV EA      MP     A    L G C+      
Sbjct: 139 ------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA----- 187

Query: 449 IGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            G     R +  E+   N  ++  + + YA  G      ++ E+M E+        SW  
Sbjct: 188 -GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTA 241

Query: 507 L----DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           +     Q  H   A++  + M E   A    + V F + G V
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 339/576 (58%), Gaps = 17/576 (2%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN-----KCECLSDARKMFDEMRERNVVSW 127
           TLR   ++HA  +K+  +      TRL+         K   LS AR++FD +     V W
Sbjct: 43  TLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVW 102

Query: 128 -TAMISAYSQ-------KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
              ++  Y++       +  + EA  +F+RML     P+ +TF ++L +CA A   E G+
Sbjct: 103 YNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGR 162

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q H + +K     H YV  +L++MYA+ G    AR +F  +    VVS  A+I+   +  
Sbjct: 163 QAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSS 222

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ +H +V + ++ S V +  
Sbjct: 223 RPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNT 282

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LIDMY KCGSL  +  VF  M  R   +W+ M+V Y+ H  GRE + LF  M+++  +K
Sbjct: 283 ALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQG-IK 341

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD VT+L VL  CSH G+   GL  F  + +   G  P I+HYGCV D+L R+G++  A 
Sbjct: 342 PDDVTFLGVLYACSHSGLVSEGLQYFDSMREF--GLVPGIKHYGCVADLLARSGQLDRAY 399

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           EFI  +P +PTA +  +LL AC    + D+G+ V +R++E++  + G+YVI SNL A+ G
Sbjct: 400 EFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTG 459

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           RWE++ RVR+LM EK V K PG S IE+D  +H F A D  HP   +    V  +  + K
Sbjct: 460 RWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLK 519

Query: 540 EAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            AGYVP+ S V + ++ EE+K   L  HSEKLA++FGL+ T  G  +RV+KNLR+C DCH
Sbjct: 520 LAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCH 579

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + AK VS V+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 580 SMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 4/311 (1%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  +  + M   G+      + +LL AC   R    G++ H   +K       Y+   LI
Sbjct: 125 EAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLI 184

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y +C     AR MF  +    VVS+ AMI+A  + +   EAL LF  M     +    
Sbjct: 185 NMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSV 244

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           T  +VL++CA     ELG+ IH  + K   +S + V ++L+DMY K G + +A  VF+ +
Sbjct: 245 TLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
             RD  + + +I  YA      EAI LF +++ +G+  + VT+  VL A S    +  G 
Sbjct: 305 ESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGL 364

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
           Q    +  F +   +     + D+ ++ G L  +    D +  + T I W  +L      
Sbjct: 365 QYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSR 424

Query: 340 G---MGREVVE 347
           G   +G++V E
Sbjct: 425 GDADLGKQVFE 435


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/532 (41%), Positives = 327/532 (61%), Gaps = 9/532 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMI-----SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           L+ AR++FD +     V W   +             + EA  +F+RM+     P+ +TF 
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA A   E G+Q H + +K+    H YV  +L++MYA+ G +  AR +F+ +   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            VVS  A+I+   +  L  EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ +H
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            ++ +  + S V +  +LIDMY+KCGSL  +  VF +M  R   +W+ M+V Y+ HG GR
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E + +F  M+++  +KPD VT+L VL  CSH GM   GL  F  + +   G    I+HYG
Sbjct: 323 EAISMFEEMKKQG-MKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREY--GIVSGIKHYG 379

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           CV D+L R+G++  A +FI  +P +PTA +  +LL AC  H +VD+G+ V +R++E++  
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           + G+YVI SNL A+ GRWE++  VR+LM EK V K PG S IE+D ++H F A D SHP 
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
            +E    V ++  + K  GYVP+ S V + ++ EE+K   L  HSEKLA++FGL+ T  G
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +R++KNLR+C DCH+ AK VS V+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC + R    G++ H   +K       Y+   LI  Y +C  +  AR MFD M   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVS+ AMI+A  + +   EAL LF  M     +P   T  +VL++CA     ELG+ IH
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I K   +S + V ++L+DMYAK G + +A GVF+ +  RD  + + ++  YA  G   
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI +F +++ +GM  + VT+  VL A S    +  G Q    +  + I S +     + 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 303 DMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVE 347
           D+ ++ G L  + +  D +  + T I W  +L   + HG   MG+ V E
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFE 431


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 362/637 (56%), Gaps = 29/637 (4%)

Query: 11  FSSLTFTQQQL--------TVPSFPPNPQNLKTL----CSNGQLTKALIEMATLGLEMRF 58
            S L+  +Q L        ++P FPP+  +  +L      +G L  A I +     E   
Sbjct: 86  ISGLSLRRQTLPDAAAALASIP-FPPSVVSFTSLLRGYVRHGLLADA-IRLFQQMPERNH 143

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
             Y  LL   ++   +   +R+   M        V   T ++  Y +   +++AR +FDE
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RNVVSWTAMIS Y+Q       +NL  ++     E NE ++  +L     A   E  
Sbjct: 200 MPKRNVVSWTAMISGYAQNGE----VNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            ++ + +     E  +   ++++  + + G +  A+ VFE + ERD  + +A+I  Y Q 
Sbjct: 256 AELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
               EA+  FR++   G+  NY +  S+LT  + LA L +G++VH+ +LR      V   
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV 371

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++LI MY KCG+L  ++RVF     + ++ WN+M+ GY++HG+G + + +F+ MR    +
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAG-M 430

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +TY+  L+ CS+ G    G  +F+ +        P  EHY C+VD+LGR+G V EA
Sbjct: 431 SPDGITYIGALTACSYTGKVKEGREIFNSMT-VNSSIRPGAEHYSCMVDLLGRSGLVEEA 489

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + IKNMP EP A I G+L+GACR+H N +I EF  ++L+E+EP NAG YV+LS++Y S 
Sbjct: 490 FDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSV 549

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD-RSHPMREELSAKVKQLSVK 537
           GRWED +++R+ +  + + K PG SWIE D+ +H F + D  +HP    +   +++L   
Sbjct: 550 GRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGL 609

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             E+GY  D S VL+D+DEEQK   L  HSE+ A+ +GL+  PEG PIRV+KNLR+C DC
Sbjct: 610 LMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDC 669

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K ++K+  R++ LRD NRFHH  +G CSC DYW
Sbjct: 670 HSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 77/315 (24%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM----------------LR 152
           +  AR  F+ M  R   S+ A+++ Y +      AL LF RM                LR
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 153 SDTEPNEFTFATVLTSCAGAFGFE---LGKQIHSLIIKS----------NFESHIYVGSS 199
             T P+       +        F     G   H L+  +          N  S+  +   
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD    AGR++EAR +F+ +P+RDVV+ TA++SGY Q G   EA  LF ++    ++S 
Sbjct: 153 LLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS- 207

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
                                                   ++I  Y++ G +  +R++F+
Sbjct: 208 --------------------------------------WTAMISGYAQNGEVNLARKLFE 229

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M ER  +SW AMLVGY + G   +  ELFN M E      +     A++ G    GM D
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN-----AMMVGFGQRGMVD 284

Query: 380 RGLAVFHEIVDCKDG 394
               VF ++ +  DG
Sbjct: 285 AAKTVFEKMCERDDG 299



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 118/270 (43%), Gaps = 56/270 (20%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           A+AG I  AR  FE +P R   S  A+++GY +  L + A+ LFR++    + S    Y 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS----YN 83

Query: 265 SVLTALS--------GLAALG--------------------HGKQVHSHVLRFEIP---- 292
           ++++ LS          AAL                     HG    +  L  ++P    
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 293 -SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            SY VL   L+D     G +  +RR+FD M +R V++W AML GY + G   E   LF+ 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG- 410
           M + N      V++ A++SG +  G  +    +F  +        PE         ++G 
Sbjct: 200 MPKRN-----VVSWTAMISGYAQNGEVNLARKLFEVM--------PERNEVSWTAMLVGY 246

Query: 411 -RAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            +AG V +A E    MP  P AA    ++G
Sbjct: 247 IQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 104/282 (36%), Gaps = 55/282 (19%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-- 356
           N+ I   ++ G++  +R  F+ M  RT  S+NA+L GY ++ +    + LF  M   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 357 --------------------------KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                                        P  V++ ++L G    G+    + +F ++  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 391 CKDGFEPEIEH--YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                 PE  H  Y  ++  L  AGRV EA      MP     A    L G C+      
Sbjct: 139 ------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA----- 187

Query: 449 IGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            G     R +  E+   N  ++  + + YA  G      ++ E+M E+        SW  
Sbjct: 188 -GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTA 241

Query: 507 L----DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           +     Q  H   A++  + M E   A    + V F + G V
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/552 (38%), Positives = 338/552 (61%), Gaps = 37/552 (6%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F +  + ++  +TA I+  S      +A  L++++L S+  PNEFTF+++L SC+    
Sbjct: 86  LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST--- 142

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS- 233
            + GK IH+ ++K       YV + L+D+YAK G +  A+ VF+ +PER +VS TA+I+ 
Sbjct: 143 -KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITC 201

Query: 234 ------------------------------GYAQLGLDEEAIELFRKLQVEGMIS-NYVT 262
                                         GYAQ G   +A+ LF+KL  EG    + +T
Sbjct: 202 YAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEIT 261

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             + L+A S + AL  G+ +H  V    I   V +   LIDMYSKCGSL  +  VF++  
Sbjct: 262 VVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP 321

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + +++WNAM+ GY+ HG  ++ + LFN M+    ++P  +T++  L  C+H G+ + G+
Sbjct: 322 RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGI 381

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F E +  + G +P+IEHYGC+V +LGRAG++  A E IKNM  +  + +  S+LG+C+
Sbjct: 382 RIF-ESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCK 440

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H +  +G+ + + L+ +  +N+G YV+LSN+YAS G +E V +VR LMKEK + K+PG 
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           S IE++  +H F A DR H   +E+   ++++S + K  GYVP+ + VL D++E +KE+ 
Sbjct: 501 STIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQS 560

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           L  HSE+LA+ +GLI T  G+P+++ KNLR+C DCH   K +SK+ GRK+ +RD+NRFHH
Sbjct: 561 LQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHH 620

Query: 623 IVEGTCSCGDYW 634
             +G+CSCGD+W
Sbjct: 621 FTDGSCSCGDFW 632



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 7/258 (2%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDT 155
           T +I  Y K   +  AR +FD M ER++VSW  MI  Y+Q     +AL LF ++L     
Sbjct: 196 TAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKP 255

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+E T    L++C+     E G+ IH  +  S    ++ V + L+DMY+K G + EA  
Sbjct: 256 KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLA 274
           VF   P +D+V+  A+I+GYA  G  ++A+ LF ++Q + G+    +T+   L A +   
Sbjct: 316 VFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375

Query: 275 ALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAM 332
            +  G ++  S    + I   +     L+ +  + G L  +     NM+ +   + W+++
Sbjct: 376 LVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSV 435

Query: 333 LVGYSKHG---MGREVVE 347
           L     HG   +G+E+ E
Sbjct: 436 LGSCKLHGDFVLGKEIAE 453



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 40/303 (13%)

Query: 180 QIHSLIIKSNFESHI---YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           QIH+ I++ N   H     +   L   YA  G+I  +  +F    + D+   TA I+  +
Sbjct: 47  QIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 106

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             GL ++A  L+ +L    +  N  T++S+L + S  +    GK +H+HVL+F +     
Sbjct: 107 INGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPY 162

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERT------------------------------- 325
           +   L+D+Y+K G +  +++VFD M ER+                               
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           ++SWN M+ GY++HG   + + LF  +  E K KPD +T +A LS CS  G  + G  + 
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWI- 281

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           H  V         ++    ++DM  + G + EA+    + P +   A    + G     Y
Sbjct: 282 HVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY 340

Query: 446 NVD 448
           + D
Sbjct: 341 SQD 343



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 117/274 (42%), Gaps = 55/274 (20%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     L  G+ +H  +  +  R  V + T LI  Y+KC  L +A  +F++   +++
Sbjct: 266 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+W AMI+ Y+   +S +AL LF  M   +  +P + TF   L +C              
Sbjct: 326 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQAC-------------- 371

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL-------PERDVVSCTAIISGYA 236
                                A AG ++E   +FE +       P+ +   C   + G A
Sbjct: 372 ---------------------AHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRA 410

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS--- 293
             G  + A E  + + ++   ++ V ++SVL +         GK++  +++   I +   
Sbjct: 411 --GQLKRAYETIKNMNMD---ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGI 465

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           YV+L N    +Y+  G      +V + M E+ ++
Sbjct: 466 YVLLSN----IYASVGDYEGVAKVRNLMKEKGIV 495


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 355/589 (60%), Gaps = 5/589 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + GLE     Y  +L AC +   L  G+ +H H++++ +   + +R  LI  Y KC 
Sbjct: 160 KMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCG 219

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L D++ +F  M  ++VVSW AMI+AY+   H  +A +LF RM      P+ +TF+++L 
Sbjct: 220 SLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILG 279

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA     E G+ +H  I    F+    + ++L+ M+ + G +  AR  F  + ++++ +
Sbjct: 280 ACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGA 339

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +++ YAQ    ++A+ L++ + +EG   +  T++SV+ + + L AL  GK +H    
Sbjct: 340 WNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECST 399

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                  V+L  +L++MY+KCGSL  +++ FD +S + V+SW+AM+   ++HG   E +E
Sbjct: 400 SCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALE 459

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVV 406
           L +LM  +  +  + VT  +VL  CSHGG    G+  F  +   +D G E + E+    +
Sbjct: 460 LSHLMNLQG-IAQNEVTASSVLHACSHGGRLYEGIDYFMGL--SQDFGIERDEENTVGFI 516

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAG + EA   +  MPF+ +   L +LLG C+VH +V  G+ + +R++ +EPEN G
Sbjct: 517 DLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPG 576

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
           +YV+L+N+YA+AGRW+DV ++R  M++K V +  G S IE    ++ F   D S+P   E
Sbjct: 577 SYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLE 636

Query: 527 LSAKVKQLSVKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPI 585
           + A++++L  + K E GYVPD   V +DV +++KE++L  HSEK+A+ FGLI +P G+ +
Sbjct: 637 IRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTL 696

Query: 586 RVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+IKNLR+C DCH   K  SK+ GR++ +RD  RFHH   G CSCGDYW
Sbjct: 697 RIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 176/331 (53%), Gaps = 4/331 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
            +L   +I  Y KC+   DAR++FD +++RN  SW+ ++  Y Q A   EAL ++  M+R
Sbjct: 2   TFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR 61

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
            +   + +T ++VL +C      E G+ +     +  FE  + V +SL+ ++AK G + E
Sbjct: 62  KEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEE 121

Query: 213 ARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           A  VF  +   RD++S TA+I  Y + G ++ A++ + K++ +G+  +  TYA++L A S
Sbjct: 122 AESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACS 181

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
               L  GK +H H+L  +    + ++N+LI MY+KCGSL  S+ +F  M  + V+SWNA
Sbjct: 182 SPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNA 241

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+  Y+ +G  ++   LF+ M       PD  T+ ++L  C+     + G  +   I   
Sbjct: 242 MIAAYTLYGHDKDAFSLFHRMCTLGHT-PDIYTFSSILGACASPKRLEDGRMLHVRIT-- 298

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
             GF+ +      ++ M  R G +  A  + 
Sbjct: 299 ARGFDRDFAMQNNLISMFTRCGSLESARRYF 329



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 185/357 (51%), Gaps = 4/357 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE- 121
           ++L AC     +  G+ V     +  +   V + T LI  + KC CL +A  +F  M   
Sbjct: 73  SVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAM 132

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+++S TAMI AY +   +  AL+ + +M     EP+ FT+A +L +C+       GK I
Sbjct: 133 RDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHI 192

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H  I++S    +I V ++L+ MYAK G + +++ +F  +  +DVVS  A+I+ Y   G D
Sbjct: 193 HKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHD 252

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           ++A  LF ++   G   +  T++S+L A +    L  G+ +H  +          +QN+L
Sbjct: 253 KDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNL 312

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I M+++CGSL  +RR F ++ ++ + +WN ML  Y++   G++ + L+  M  E    PD
Sbjct: 313 ISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEG-FTPD 371

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             T+ +V+  C+  G    G  +      C  GFE ++     +V+M  + G + +A
Sbjct: 372 RFTFSSVVDSCASLGALREGKFIHECSTSC--GFEKDVILGTALVNMYAKCGSLADA 426


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 327/561 (58%), Gaps = 2/561 (0%)

Query: 74   LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
            LR G+++HA  +K       ++ T L+  Y KC  L  A+++FDEM   + V WTA+I+A
Sbjct: 542  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 601

Query: 134  YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
            Y       EA+++      +   P+ FT   VLT+CA       G+ +     +      
Sbjct: 602  YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 661

Query: 194  IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            ++V ++ +D+Y K G + +AR VF+ +  +D V+  A++ GYA  G   EA++LF  +Q 
Sbjct: 662  VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 721

Query: 254  EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            EGM  +    A  L+A + L AL  G+Q    V   E     VL  +LIDMY+KCGS   
Sbjct: 722  EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 781

Query: 314  SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
            +  VF  M ++ +I WNAM++G    G  +    L   M E++ VK +  T++ +L  C+
Sbjct: 782  AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM-EKSGVKLNDNTFIGLLCSCT 840

Query: 374  HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
            H G+   G   FH +        P IEHYGC+VD+L RAG + EA + + +MP    A I
Sbjct: 841  HTGLIQDGRRYFHNMTKLYH-ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 899

Query: 434  LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            LG+LLG C++H N ++ E V ++L+ +EP N+GNYV+LSN+Y++ GRWED  ++R  MK 
Sbjct: 900  LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 959

Query: 494  KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
            K V K P  SW+E +  +H F   D+SHP+ +++  K+ +L ++ K  GY P    V++D
Sbjct: 960  KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 1019

Query: 554  VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
            V++E+KE  L+ HSEKLA+ F L+ T  G  IRV KNLR+C DCH   K VS++  R++ 
Sbjct: 1020 VEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREII 1079

Query: 614  LRDKNRFHHIVEGTCSCGDYW 634
            +RD NRFH   +G+CSC DYW
Sbjct: 1080 VRDNNRFHCFRDGSCSCNDYW 1100


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 356/576 (61%), Gaps = 7/576 (1%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            + L++C +   L  G+++H    K      V +   L+  Y + + +++ +K+F +M E 
Sbjct: 562  STLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEY 621

Query: 123  NVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            + VSW + I A ++ +A   +AL  F+ M+++   PN  TF  +L + +      LG QI
Sbjct: 622  DQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681

Query: 182  HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGL 240
            H+LI+K +      + ++LL  Y K  ++ +   +F  + ER D VS  ++ISGY   G+
Sbjct: 682  HALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGI 741

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +A++L   +   G   +  T+A+VL+A + +A L  G +VH+  +R  + S VV+ ++
Sbjct: 742  LHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSA 801

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            L+DMY+KCG + Y+ R F+ M  R + SWN+M+ GY++HG G++ +++F  M++  +  P
Sbjct: 802  LVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQ-SP 860

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            D VT++ VLS CSH G+ D G   F  + +   G  P IEH+ C+VD+LGRAG V +  +
Sbjct: 861  DHVTFVGVLSACSHVGLVDEGYKHFKSMGEVY-GLSPRIEHFSCMVDLLGRAGDVKKIED 919

Query: 421  FIKNMPFEPTAAILGSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            FIK MP +P   I  ++LGAC R +  N ++G+   + L+E+EP+NA NYV+LSN++A+ 
Sbjct: 920  FIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAG 979

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
            G WEDV   R  M++ AV KD G SW+ +   +H F A D++HP +E++  K+K+L  K 
Sbjct: 980  GNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKI 1039

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            ++AGYVP+    LYD++ E KE++L  HSEKLA+ F L    E  PIR++KNLR+C DCH
Sbjct: 1040 RDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCH 1098

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
               K++SK+ GR++ LRD NRFHH   G CSCGDYW
Sbjct: 1099 TAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 1/240 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q  K  +EM   G       +  +L A  +   L  G ++HA ++K        +   L+
Sbjct: 642 QALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALL 701

Query: 101 VFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
            FY KCE + D   +F  M E R+ VSW +MIS Y       +A++L   M++   + + 
Sbjct: 702 AFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDG 761

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           FTFATVL++CA     E G ++H+  +++  ES + VGS+L+DMYAK G+I  A   FE 
Sbjct: 762 FTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFEL 821

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +P R++ S  ++ISGYA+ G  ++A+++F +++  G   ++VT+  VL+A S +  +  G
Sbjct: 822 MPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEG 881



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 191/404 (47%), Gaps = 47/404 (11%)

Query: 54  LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           L+  F+ Y T         +L     +H  + KT +   V+    LI  Y +   L  AR
Sbjct: 143 LDSEFDRYKT-------SSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSAR 195

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AG 171
           K+FDEM ++N+VSW+ +IS Y+Q     EA +LF  ++ S   PN F   + L +C   G
Sbjct: 196 KLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTA 230
           + G +LG QIH+ I K    S + + + L+ MY+  +G I +A  VF+ +  R+ V+  +
Sbjct: 256 STGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNS 315

Query: 231 IISGYAQLGLDEEAIELFRKLQVEG----MISNYVTYASVLTALSGLAALGHG--KQVHS 284
           IIS Y + G    A +LF  +Q+EG    +  N  T  S++TA   LA  G    +Q+ +
Sbjct: 316 IISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLT 375

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            + +      + + ++L++ +++ G +  ++ +F  M +R  ++ N ++VG ++   G E
Sbjct: 376 RIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEE 435

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG---------- 394
             ++F  M++  ++  +S+  L               L+ F E  + K+G          
Sbjct: 436 AAKVFKEMKDLVEINSESLVVL---------------LSTFTEFSNLKEGKRKGQEVHAY 480

Query: 395 ------FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
                  +  I     +V+M G+   +  A    + MP + T +
Sbjct: 481 LFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVS 524



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 164/335 (48%), Gaps = 49/335 (14%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE-CLSDARKMFDEMRERNVVSWTAMIS 132
           ++ G ++HA + K      + L   L+  Y+ C   + DA ++FDE++ RN V+W ++IS
Sbjct: 259 IKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIIS 318

Query: 133 AYSQKAHSFEALNLFIRMLRSDTE----PNEFTFATVLTS-CAGA-FGFELGKQIHSLII 186
            Y ++  +  A  LF  M     E    PNE+T  +++T+ C+ A  G  L +Q+ + I 
Sbjct: 319 VYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIE 378

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           KS F   +YVGS+L++ +A+ G +  A+ +F+ + +R+ V+   ++ G A+    EEA +
Sbjct: 379 KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK 438

Query: 247 LFRKLQ--VEGMISNYVTYASVLTALSGLA-ALGHGKQVHSHVLRFE-IPSYVVLQNSLI 302
           +F++++  VE    + V   S  T  S L      G++VH+++ R   + + + + N+L+
Sbjct: 439 VFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALV 498

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MY KC ++  +  VF  M  +  +SWN                                
Sbjct: 499 NMYGKCTAIDNACSVFQLMPSKDTVSWN-------------------------------- 526

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
               +++SG  H    +  ++ FH +   ++G  P
Sbjct: 527 ----SMISGLDHNERFEEAVSCFHTMK--RNGMVP 555



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 148/293 (50%), Gaps = 6/293 (2%)

Query: 86  KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
           K+ +   +Y+ + L+  + +   +  A+ +F +M +RN V+   ++   +++    EA  
Sbjct: 379 KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK 438

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK----QIHSLIIKSNF-ESHIYVGSSL 200
           +F  M +   E N  +   +L++       + GK    ++H+ + +S   ++ I +G++L
Sbjct: 439 VFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNAL 497

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           ++MY K   I  A  VF+ +P +D VS  ++ISG       EEA+  F  ++  GM+ + 
Sbjct: 498 VNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSN 557

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            +  S L++ S L  L  G+Q+H    ++ +   V + N+L+ +Y++  S+   ++VF  
Sbjct: 558 FSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQ 617

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           M E   +SWN+ +   +K+         + L   +   +P+ VT++ +L+  S
Sbjct: 618 MPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVS 670



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 1/162 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T+L+AC +  TL  G  VHA  ++ C    V + + L+  Y KC  +  A + F+ M 
Sbjct: 764 FATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMP 823

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-K 179
            RN+ SW +MIS Y++  H  +AL +F RM +    P+  TF  VL++C+     + G K
Sbjct: 824 VRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYK 883

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              S+         I   S ++D+  +AG + +     + +P
Sbjct: 884 HFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMP 925


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/646 (35%), Positives = 343/646 (53%), Gaps = 75/646 (11%)

Query: 24  PSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAH 83
           PS PP   ++  L  +  L   L  ++  G       Y  +         L+ G +VHAH
Sbjct: 37  PSSPPFKCSISPLTISATLQNLLQPLSAPG-PPPILSYAPVFQFLTGLNMLKLGHQVHAH 95

Query: 84  MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143
           M+    +P   + ++++ FY     +  +  +F+ + +                      
Sbjct: 96  MLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGDY--------------------- 134

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
                           FTF  VL S        +GK +H LI++   +  +YV +SL+ +
Sbjct: 135 ----------------FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIIL 178

Query: 204 YAKAGRIHEAR-------------------------------GVFECLPERDVVSCTAII 232
           Y K G I++A                                 +FE +P R++VS T +I
Sbjct: 179 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMI 238

Query: 233 SGYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           SGY+Q GL ++A+ LF ++  E  G+  N+VT  SVL A + L+ L  G+Q+H    R  
Sbjct: 239 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 298

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFD--NMSERTVISWNAMLVGYSKHGMGREVVEL 348
           + S   +  +L  MY+KCGSL  +R  FD  N +E+ +I+WN M+  Y+ +G G + V  
Sbjct: 299 LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 358

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M +   ++PD +T+  +LSGCSH G+ D GL  F+ +        P +EHY CV D+
Sbjct: 359 FREMIQAG-IQPDDITFTGLLSGCSHSGLVDVGLKYFNHM-STTYSINPRVEHYACVADL 416

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA + +  MP     +I GSLL ACR H N+++ E   ++L  +EPEN GNY
Sbjct: 417 LGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNY 476

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YA AGRW++V ++R ++K +   K PG SWIE++   H F   D SHP  +E+ 
Sbjct: 477 VLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIY 536

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++ L  K K AGY PD S VL+D+ EE+KE  L+ HSEKLA+ FG++ TP    +RV 
Sbjct: 537 MFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVT 596

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLRIC DCH    F+S++YGR+V +RD NRFHH   G CSCGDYW
Sbjct: 597 KNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 327/561 (58%), Gaps = 2/561 (0%)

Query: 74   LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
            LR G+++HA  +K       ++ T L+  Y KC  L  A+++FDEM   + V WTA+I+A
Sbjct: 566  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 625

Query: 134  YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
            Y       EA+++      +   P+ FT   VLT+CA       G+ +     +      
Sbjct: 626  YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQS 685

Query: 194  IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
            ++V ++ +D+Y K G + +AR VF+ +  +D V+  A++ GYA  G   EA++LF  +Q 
Sbjct: 686  VFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQA 745

Query: 254  EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            EGM  +    A  L+A + L AL  G+Q    V   E     VL  +LIDMY+KCGS   
Sbjct: 746  EGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVE 805

Query: 314  SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
            +  VF  M ++ +I WNAM++G    G  +    L   M E++ VK +  T++ +L  C+
Sbjct: 806  AWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM-EKSGVKLNDNTFIGLLCSCT 864

Query: 374  HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
            H G+   G   FH +        P IEHYGC+VD+L RAG + EA + + +MP    A I
Sbjct: 865  HTGLIQDGRRYFHNMTKLYH-ISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVI 923

Query: 434  LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            LG+LLG C++H N ++ E V ++L+ +EP N+GNYV+LSN+Y++ GRWED  ++R  MK 
Sbjct: 924  LGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKA 983

Query: 494  KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
            K V K P  SW+E +  +H F   D+SHP+ +++  K+ +L ++ K  GY P    V++D
Sbjct: 984  KGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFD 1043

Query: 554  VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVS 613
            V++E+KE  L+ HSEKLA+ F L+ T  G  IRV KNLR+C DCH   K VS++  R++ 
Sbjct: 1044 VEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREII 1103

Query: 614  LRDKNRFHHIVEGTCSCGDYW 634
            +RD NRFH   +G+CSC DYW
Sbjct: 1104 VRDNNRFHCFRDGSCSCNDYW 1124


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 343/573 (59%), Gaps = 33/573 (5%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V     +IV + K   + +A K+F+EM+++++VSW+A+IS Y Q     EAL LF  M  
Sbjct: 223 VIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA 282

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA------- 205
           +    +E    +VL++C+       GK +H L++K   E+++ + ++L+ MY+       
Sbjct: 283 NGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVT 342

Query: 206 ------------------------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
                                   K G I +AR +F+ +P++D VS +A+ISGYAQ    
Sbjct: 343 AQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRF 402

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            E + LF+++Q+EG   +     SV++A + LAAL  GK +H+++ +  +   ++L  +L
Sbjct: 403 TETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTL 462

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I+MY K G +  +  VF  + E+ V +WNA+++G + +G+  + ++ F+ M+E   V P+
Sbjct: 463 INMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHG-VTPN 521

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T++AVL  C H G+ D G   F+ ++  +    P I+HYGC+VD+LGRAG + EA E 
Sbjct: 522 EITFVAVLGACRHMGLVDEGHRHFNSMIQ-EHKIGPNIKHYGCMVDLLGRAGMLKEAEEL 580

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I++MP  P  +  G+LLGAC+ + + + GE +G++L+E+ P++ G  V+LSN+YAS G W
Sbjct: 581 IESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNW 640

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            DV  VR +M++  V K PG S IE    +H F A D++HP  E +   + +++ K K  
Sbjct: 641 VDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLE 700

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY PD   V  D+DEE+KE  L  HSEKLA+ FGLI      PIR++KNLRIC DCH  A
Sbjct: 701 GYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAA 760

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +SK + R++ +RD++RFHH  +G+CSC DYW
Sbjct: 761 KLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 192/410 (46%), Gaps = 73/410 (17%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L  +C  +     G+ +  H++K  +   VY++  LI  Y  C  LSDARK+FD   
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             ++VSW +M++ Y    +  EA +++ RM      P                       
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRM------P----------------------- 219

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
                     E ++   +S++ ++ K G + EA  +F  + ++D+VS +A+IS Y Q  +
Sbjct: 220 ----------ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEM 269

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ LF+++   G++ + V   SVL+A S L  +  GK VH  V++  I +YV LQN+
Sbjct: 270 YEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNA 329

Query: 301 LIDMYS-------------------------------KCGSLTYSRRVFDNMSERTVISW 329
           LI MYS                               KCG +  +R +FD+M ++  +SW
Sbjct: 330 LIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSW 389

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           +AM+ GY++     E + LF  M+ E   KPD    ++V+S C+H    D+G  +   I 
Sbjct: 390 SAMISGYAQQDRFTETLVLFQEMQIEG-TKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439
             K+G +  I     +++M  + G V +ALE  K +  +  +     +LG
Sbjct: 449 --KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILG 496



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 2/189 (1%)

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAG--RIHEARGVFECLPERDVVSCTAIISGYAQ 237
           QI S +I S F    +  S LL    +     I+++  +F  +   +   C  ++ GY Q
Sbjct: 44  QILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQ 103

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                +AI +++ +    + ++  TY  +  + S   A   GK +  HVL+    S V +
Sbjct: 104 RNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYI 163

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           QN+LI+MY+ CG+L+ +R+VFD  S   ++SWN+ML GY   G   E  ++++ M E N 
Sbjct: 164 QNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNV 223

Query: 358 VKPDSVTYL 366
           +  +S+  L
Sbjct: 224 IASNSMIVL 232



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G+ +HA++ K   +  + L T LI  Y K  C+ DA ++F  + E+
Sbjct: 426 SVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEK 485

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQI 181
            V +W A+I   +      ++L  F  M      PNE TF  VL +C      + G +  
Sbjct: 486 GVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHF 545

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGL 240
           +S+I +     +I     ++D+  +AG + EA  + E +P   DV +  A++    + G 
Sbjct: 546 NSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGD 605

Query: 241 DEEAIELFRKL 251
           +E    + RKL
Sbjct: 606 NETGERIGRKL 616


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 344/588 (58%), Gaps = 4/588 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+ +       +L A    + L+ G  +    +K  +    Y+ T LI  Y+KC 
Sbjct: 199 EMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCG 258

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            ++ AR +F  +   +++++ AMIS ++    +  ++ LF  +L S    +  T    L 
Sbjct: 259 DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVG-LI 317

Query: 168 SCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
                FG   L   IH   +KS    +  V ++   +Y K   I  AR +F+  PE+ VV
Sbjct: 318 PLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVV 377

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +  A+ISGY Q G  E AI LF+++       N VT  ++L+A + L +L  GK VH  +
Sbjct: 378 AWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLI 437

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
               +   + +  +L+DMY+KCG+++ + ++FD+MSE+  ++WN M+ GY  HG G E +
Sbjct: 438 KSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEAL 497

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +L+N M       P +VT+L+VL  CSH G+   G  +FH +V+ K   EP IEHY C+V
Sbjct: 498 KLYNEMLHLG-YNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVN-KYRIEPLIEHYACMV 555

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGR+G++ +ALEFIK MP EP  A+ G+LLGAC +H + DI     +RL E++P + G
Sbjct: 556 DILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVG 615

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YV+LSN+Y+    +     +R+++K++ + K PG + IE++   H F + DRSH    +
Sbjct: 616 YYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATD 675

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+++L+ K +E GY  +    L+DV+EE+KE  +  HSEKLA+ FGLI T  G  IR
Sbjct: 676 IYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIR 735

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +IKNLR+C+DCH   KF+SK+  R + +RD NRFHH  +G CSCGDYW
Sbjct: 736 IIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 174/365 (47%), Gaps = 6/365 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y   + AC N + L     +HAH I   Y   V++ + L+  Y K   +  ARK+FD M 
Sbjct: 114 YAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMP 170

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER+ V W  MI+   +     +++ LF  M+      +  T   VL + A     ++G  
Sbjct: 171 ERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMG 230

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           I  L +K  F    YV + L+ +Y+K G ++ AR +F  +   D+++  A+ISG+   G 
Sbjct: 231 IQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGG 290

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E +++LFR+L   G   +  T   ++   S    L     +H   ++  I     +  +
Sbjct: 291 TECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTA 350

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
              +Y+K   +  +R +FD   E+TV++WNAM+ GY+++G     + LF  M  + +  P
Sbjct: 351 FTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMM-KTEFTP 409

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           ++VT   +LS C+  G    G  V H I    +  EP I     +VDM  + G + EA +
Sbjct: 410 NAVTITTILSACAQLGSLSFGKWVHHLIK--SENLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 421 FIKNM 425
              +M
Sbjct: 468 LFDSM 472



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL----RFEIPSYVVLQNSLIDMYSKC 308
           + G  S  ++  ++ + ++  +   H  Q H+  +    RF++ +   L   L D     
Sbjct: 2   ILGNSSGKLSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDF---- 57

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            +  ++R +F ++ +  +  +N ++ G+S +      + L+  +R    + PD+ TY   
Sbjct: 58  SATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFA 117

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           ++ CS+    D+ L + H      DG+   +     +VD+  +  RV  A +    MP
Sbjct: 118 VAACSN----DKHLMLLHA-HSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMP 170


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 330/537 (61%), Gaps = 12/537 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++V Y +   +  A   F++M  +++ SW  +IS ++Q     +A +LF  M     E N
Sbjct: 142 MLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKN 197

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
             +++ +++        E  ++++  + +KS     + V +++L  Y K G++  A  +F
Sbjct: 198 GVSWSAMISGYVEHGDLEAAEELYKNVGMKS-----VVVETAMLTGYMKFGKVELAERIF 252

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +  +++V+  ++I+GY +    E+ +++F+ +    +  N ++ +SVL   S L+AL 
Sbjct: 253 QRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALP 312

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+Q+H  V +  +        SLI MY KCG L  + ++F  M  + VISWNAM+ GY+
Sbjct: 313 LGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYA 372

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +HG GR+ + LF+ MR    +KPD +T++AV+  C+H G  D G+  F  +   + G E 
Sbjct: 373 QHGAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK-EFGIEA 430

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           +  HY CV+D+LGRAGR+ EA+  IK MPF+P AAI G+LLGACR+H N+D+ EF  + L
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNL 490

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           + ++P +A  YV L+N+YA+  +W+ V +VR++MKE  V K PG SWIE+  + H F +S
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSS 550

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           DR HP    +  K+ +L  K K AGYVPD+   L+DV+EE KEK+LL HSEKLA+ FGL+
Sbjct: 551 DRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLM 610

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G PIRV KNLR+C DCH   KF+S +  R++ +RD  RFHH   G CSCGDYW
Sbjct: 611 KTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 6/277 (2%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
              NGQ+ KA  ++ ++  E     +  +++  V    L   + ++    K      V +
Sbjct: 177 FAQNGQMQKAF-DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMKSVVV 231

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T ++  Y K   +  A ++F  M  +N+V+W +MI+ Y +   + + L +F  M+ S  
Sbjct: 232 ETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN  + ++VL  C+      LG+Q+H L+ KS         +SL+ MY K G +  A  
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  +P +DV+S  A+ISGYAQ G   +A+ LF K++   M  +++T+ +V+ A +    
Sbjct: 352 LFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGF 411

Query: 276 LGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
           +  G Q    + + F I +  V    +ID+  + G L
Sbjct: 412 VDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRL 448



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-HGMGREV 345
           L  +  S VV  N  I  + +   L  +R VF+ MS RT ++WN ML GY+K  G  +E 
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
            ELF+ + E     PDSV+Y  +L         +  LA F+++   KD     I  +  +
Sbjct: 125 HELFDKIPE-----PDSVSYNIMLVCYLRSYGVEAALAFFNKM-PVKD-----IASWNTL 173

Query: 406 VDMLGRAGRVGEALEFIKNMP 426
           +    + G++ +A +    MP
Sbjct: 174 ISGFAQNGQMQKAFDLFSVMP 194



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 15/157 (9%)

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           DVVS    I+ + +    E A  +F K+ V       VT+ ++L+  + +A    GK   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVR----TTVTWNTMLSGYTKVA----GKVKE 123

Query: 284 SHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           +H L  +IP    V  N ++  Y +   +  +   F+ M  + + SWN ++ G++++G  
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQM 183

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGME 378
           ++  +LF++M E+N      V++ A++SG   HG +E
Sbjct: 184 QKAFDLFSVMPEKN-----GVSWSAMISGYVEHGDLE 215


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 335/560 (59%), Gaps = 4/560 (0%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+++H   +K      V++       Y K     DA  MFDEM +RN+ +W A IS   Q
Sbjct: 127 GKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQ 186

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
              S +A+  F   L    EPN  TF   L +C       LG+Q+H+ I++  ++  + V
Sbjct: 187 DRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSV 246

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
            + L+D Y K G I  A  VF  +  R +VVS  ++++   Q   +E A  +F + + E 
Sbjct: 247 ANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEV 306

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
             ++++  +SVL+A + L  L  G+ VH+  ++  +   + + ++L+DMY KCGS+  + 
Sbjct: 307 EPTDFMI-SSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAE 365

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR-EENKVKPDSVTYLAVLSGCSH 374
           +VF  + ER +++WNAM+ GY+  G     + LF  M    + ++P  VT +++LS CS 
Sbjct: 366 QVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSR 425

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G  +RG+ +F E +    G EP  EH+ CVVD+LGR+G V  A EFI+NM  +PT ++ 
Sbjct: 426 VGAVERGIQIF-ESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVW 484

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           G+LLGACR+H   ++G+   ++L E++  ++GN+V+LSN+ ASAGRWE+ T VR+ MK+ 
Sbjct: 485 GALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDI 544

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K+ G SWI +   +H F A D SH    E+ A + +L    KEAGYVPD +  L+D+
Sbjct: 545 GIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDL 604

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           ++E+K   +  HSEK+AL FGLI  P+G PIR+ KNLRIC DCH+  KF+S++ GR++ +
Sbjct: 605 EDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIV 664

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD +RFH   +G CSC DYW
Sbjct: 665 RDNHRFHRFKDGCCSCKDYW 684



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 21/333 (6%)

Query: 26  FPPNPQ-NLKTLCSNGQLTKALIEMATLGLEMRFEEY------------DTLLNACVNQR 72
           F   PQ NL T   N  ++ A+ +  +L   + F+E+               LNACV+  
Sbjct: 166 FDEMPQRNLATW--NAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMV 223

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER-NVVSWTAMI 131
            L  G+++HA +++  Y+  V +   LI FY KC  +  A  +F+ +  R NVVSW +M+
Sbjct: 224 RLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSML 283

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           +A  Q      A  +F++  R + EP +F  ++VL++CA   G ELG+ +H+L +K+  E
Sbjct: 284 AALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVE 342

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            +I+VGS+L+DMY K G I  A  VF  LPER++V+  A+I GYA  G  + A+ LF ++
Sbjct: 343 DNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEM 402

Query: 252 QV--EGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKC 308
            +   G+  +YVT  S+L+  S + A+  G Q+  S  L + I         ++D+  + 
Sbjct: 403 TLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRS 462

Query: 309 GSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHG 340
           G +  +     NM+ +  IS W A+L     HG
Sbjct: 463 GLVDRAYEFIQNMAIQPTISVWGALLGACRMHG 495



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 6/366 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +LL + V+      G+ +HAH+I+T   P P +L   L+  Y+K + L+ A+ +      
Sbjct: 11  SLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHL 70

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R VV+WT++IS          AL  F  M R + +PN+FTF  V  + A       GKQI
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H L +K      ++VG S  DMY K G   +A  +F+ +P+R++ +  A IS   Q    
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRS 190

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            +AI  F++        N +T+ + L A   +  L  G+Q+H+ ++R      V + N L
Sbjct: 191 LDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGL 250

Query: 302 IDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ID Y KCG +  +  VF+ +  R  V+SW +ML    ++        +F   R+E  V+P
Sbjct: 251 IDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE--VEP 308

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
                 +VLS C+  G  + G +V    V  K   E  I     +VDM G+ G +  A +
Sbjct: 309 TDFMISSVLSACAELGGLELGRSVHALAV--KACVEDNIFVGSALVDMYGKCGSIENAEQ 366

Query: 421 FIKNMP 426
               +P
Sbjct: 367 VFSELP 372


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 349/593 (58%), Gaps = 10/593 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M + G+        T L AC   R L  G++++  +         ++ + LI  Y +C  
Sbjct: 124 MCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCRE 183

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +A + FD   E++VV WTAMISAY+    +  AL L  RM     +    T+ ++L +
Sbjct: 184 IEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDA 243

Query: 169 CAGAFGFELGKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           CA       G   H        + S   V  +L+++Y K GR+ +AR V + +P R  VS
Sbjct: 244 CASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVS 303

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA+I+ YAQ G   EAI LF+ + +EG   + +T  SV+ + + L  L  GK++H+ + 
Sbjct: 304 WTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIR 363

Query: 288 RFEIPSY---VVLQNSLIDMYSKCGSLTYSRRVFD--NMSERTVISWNAMLVGYSKHGMG 342
               PS+   ++L N++I MY KCG+L  +R VF+   +  R+V++W AM+  Y+++G+G
Sbjct: 364 --SSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVG 421

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E +ELF  M  +   +P+ VT+L+VL  CSH G  ++    F  +     G  P  +HY
Sbjct: 422 EEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSM-GPDFGVPPAGDHY 480

Query: 403 GCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
            C+VD+LGRAGR+GEA + + ++  FE       + L AC+++ +++  +   +R+ E+E
Sbjct: 481 CCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELE 540

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PEN    V+LSN+YA+ GR  DV R+R  MK   V K  GRSWIE++  +H F  SD SH
Sbjct: 541 PENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSH 600

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P + E+ +++++L  + KEAGYVPD   VL DVDEE+K ++L  HSE+LA+  G+I TP 
Sbjct: 601 PRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPP 660

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G  +RV+KNLR+C DCH   KF+S++ GR++ +RD +RFHH  +G CSCGDYW
Sbjct: 661 GTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 178/377 (47%), Gaps = 6/377 (1%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
             +Y +LL  C   R L   +++HA +         +L   L+  Y+K   L  A+  F 
Sbjct: 35  INDYASLLWQC---RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFG 91

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
            +   N  SW  +++AY+Q  H   A  LF  M      PN  T +T L +C  A    L
Sbjct: 92  RITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLAL 151

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G++++ LI     E   +V SSL+ MY +   I EA   F+  PE+DVV  TA+IS YA 
Sbjct: 152 GRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAH 211

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVV 296
                 A+EL R++ +EG+     TY S+L A +    L +G   H       +  S  V
Sbjct: 212 NWRTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTV 271

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +  +L+++Y KCG +  +RRV D M  RT +SW AM+  Y+++G   E + LF  M  E 
Sbjct: 272 VAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEG 331

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             +P  +T ++V+  C+  G    G  + H  +     F   +     V+ M G+ G + 
Sbjct: 332 -AEPSDITLISVVDSCAVLGTLSLGKRI-HARIRSSPSFSQSLMLLNAVITMYGKCGNLE 389

Query: 417 EALEFIKNMPFEPTAAI 433
            A E  + +P    + +
Sbjct: 390 LAREVFECVPLRTRSVV 406


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 344/559 (61%), Gaps = 33/559 (5%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +IV +     + +A K+FDEM E+++V+W+A+I+ + Q     EA+  F+ M +     +
Sbjct: 316 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 375

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR---- 214
           E    + L++CA      +GK IHSL +K   ES+I + ++L+ MY+K G I  AR    
Sbjct: 376 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 435

Query: 215 ---------------------------GVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
                                       +F+ +PE+DVVS +++ISGYAQ  L +E + L
Sbjct: 436 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 495

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F+++Q+ G   +  T  SV++A + LAAL  GK VH+++ R  +   V+L  +LIDMY K
Sbjct: 496 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK 555

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG +  +  VF  M E+ + +WNA+++G + +G+    +++F+ M++ + V P+ +T++ 
Sbjct: 556 CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCH-VTPNEITFMG 614

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VL  C H G+ D G   F+ ++      +P ++HYGC+VD+LGRAG++ EA E +  MP 
Sbjct: 615 VLGACRHMGLVDEGQHHFYSMIH-DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPM 673

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
            P  A  G+LLGAC+ H + ++G  VG++L+E++P++ G +V+LSN+YAS G+W+DV  +
Sbjct: 674 TPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEI 733

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R +M +  V K PG S IE + ++H F A D++HP  + +   + ++++K K  GY PD+
Sbjct: 734 RGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDI 793

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           + VL DVDEE+KE  L  HSEKLA+ FGLI      PIR++KNLRIC DCH  AK +SK 
Sbjct: 794 NEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKA 853

Query: 608 YGRKVSLRDKNRFHHIVEG 626
           + RK+ +RD++RFHH  +G
Sbjct: 854 FCRKIVVRDRHRFHHFEQG 872



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 172/338 (50%), Gaps = 46/338 (13%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+ AC  +R+    ++VH H++K  +   VY+R  LI  ++ C  ++DA ++F+E  
Sbjct: 216 YPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESS 275

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             + VSW ++++ Y +  +  EA +++ +M      P                       
Sbjct: 276 VLDSVSWNSILAGYIEIGNVEEAKHIYHQM------P----------------------- 306

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
                     E  I   +S++ ++   G + EA  +F+ + E+D+V+ +A+I+ + Q  +
Sbjct: 307 ----------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 356

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEAI  F  +   G++ + V   S L+A + L  +  GK +HS  L+    SY+ LQN+
Sbjct: 357 YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNA 416

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MYSKCG +  +R++FD      +ISWN+M+ GY K  +      +F+ M E+     
Sbjct: 417 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK----- 471

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           D V++ +++SG +   + D  LA+F E+     GF+P+
Sbjct: 472 DVVSWSSMISGYAQNDLFDETLALFQEMQ--MSGFKPD 507



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 25/368 (6%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           C+N  +      + +L L++  E Y  L NA +   +  G   V   +    Y   +   
Sbjct: 386 CANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISW 445

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             +I  Y KC  + +A+ +FD M E++VVSW++MIS Y+Q     E L LF  M  S  +
Sbjct: 446 NSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 505

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+E T  +V+++CA     E GK +H+ I ++    ++ +G++L+DMY K G +  A  V
Sbjct: 506 PDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEV 565

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F  + E+ + +  A+I G A  GL E ++++F  ++   +  N +T+  VL A   +  +
Sbjct: 566 FYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 625

Query: 277 GHGKQ-----VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWN 330
             G+      +H H ++  +  Y      ++D+  + G L  +  + + M     V +W 
Sbjct: 626 DEGQHHFYSMIHDHKIQPNVKHY----GCMVDLLGRAGKLQEAEELLNRMPMTPDVATWG 681

Query: 331 AMLVGYSKHG---MGREVVELFNLMREENKVKPDSVTYLAVLSG--CSHGGMED----RG 381
           A+L    KHG   MGR V       R+  +++PD   +  +LS    S G  +D    RG
Sbjct: 682 ALLGACKKHGDSEMGRRV------GRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRG 735

Query: 382 LAVFHEIV 389
           +   H ++
Sbjct: 736 MMTKHRVL 743



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 254 EGMISNYV-----TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           + M+SNY+     TY  ++ A S   +    KQVH+HVL+    S V ++N+LI+ +S C
Sbjct: 202 KSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVC 261

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL-- 366
            ++T + RVF+  S    +SWN++L GY + G   E   +++ M E + +  +S+  L  
Sbjct: 262 SNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFG 321

Query: 367 ---AVLSGCS-HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
               V+  C     M ++ +  +  ++ C   F+          +M   A R    +  I
Sbjct: 322 MRGLVVEACKLFDEMLEKDMVTWSALIAC---FQQN--------EMYEEAIRTFVGMHKI 370

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN----LYASA 478
             M  E  A    S L AC     V++G+ +    ++I  E   +Y+ L N    +Y+  
Sbjct: 371 GVMVDEVVAV---SALSACANLLVVNMGKLIHSLSLKIGTE---SYINLQNALIYMYSKC 424

Query: 479 GRWEDVTRVRELMKE 493
           G   D+   R+L  E
Sbjct: 425 G---DIMVARKLFDE 436


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 345/573 (60%), Gaps = 5/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   L  G+ VH +MI + Y         LI  Y KC  L  ++++F  M+ +
Sbjct: 380 SILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 439

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VSW +MI+ Y Q     EA+ LF +M+++D +P+  T+  +L+         LGK++H
Sbjct: 440 DSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELH 498

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + K  F S+I V ++L+DMYAK G + ++  VFE +  RD+++   II+         
Sbjct: 499 CDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCN 558

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             + +  +++ EG+  +  T  S+L   S LAA   GK++H  + +  + S V + N LI
Sbjct: 559 LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI 618

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MYSKCGSL  S +VF  M  + V++W A++     +G G++ V  F  M E   + PD 
Sbjct: 619 EMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM-EAAGIVPDH 677

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEF 421
           V ++A++  CSH G+ + GL  FH +   KD   EP IEHY CVVD+L R+  + +A +F
Sbjct: 678 VAFVAIIFACSHSGLVEEGLNYFHRMK--KDYKIEPRIEHYACVVDLLSRSALLDKAEDF 735

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MP +P ++I G+LL ACR+  + +I + V +R++E+ P++ G YV++SN+YA+ G+W
Sbjct: 736 ILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKW 795

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           + V  +R+ +K + + KDPG SW+E+   ++ F    +     EE++  +  L+    + 
Sbjct: 796 DQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKE 855

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+ ++  VL+D+DE++K  +L GHSE+LA+ FGL+ T  G P++V+KNLR+C DCH   
Sbjct: 856 GYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVT 915

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++SK+  R++ +RD NRFH   +G CSCGDYW
Sbjct: 916 KYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 217/416 (52%), Gaps = 10/416 (2%)

Query: 15  TFTQQQLTVPSFPPNPQN--LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACV 69
           +F+  +L  PS      N  ++ L  NG  ++AL    E   + L+     + +++NAC 
Sbjct: 126 SFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 185

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
                   + +H  ++   +   +Y+   LI  Y +   L  ARK+F+EM  R+VVSW +
Sbjct: 186 GLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 245

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +IS Y+   +  EAL ++ R       P+ +T ++VL +C G    E G  IH LI K  
Sbjct: 246 LISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG 305

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +  + V + LL MY K   + + R +F+ +  RD VS   +I GY+Q+GL EE+I+LF 
Sbjct: 306 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 365

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++ V     + +T  S+L A   L  L  GK VH +++           N LI+MY+KCG
Sbjct: 366 EM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG 424

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           +L  S+ VF  M  +  +SWN+M+  Y ++G   E ++LF +M+ +  VKPDSVTY+ +L
Sbjct: 425 NLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD--VKPDSVTYVMLL 482

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           S  +  G    G  +  ++   K GF   I     +VDM  + G +G++L+  +NM
Sbjct: 483 SMSTQLGDLXLGKELHCDLA--KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 536



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 11/369 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++  A  +  T     ++H+ +I       V    +LI  Y       D    F   R
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH---FRDPTSSFSVFR 131

Query: 121 ----ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
                 NV  W ++I A +      EAL+L+    R   +P+ +TF +V+ +CAG   FE
Sbjct: 132 LASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 191

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           + K IH  ++   F S +Y+G++L+DMY +   + +AR VFE +P RDVVS  ++ISGY 
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             G   EA+E++ + +  G++ +  T +SVL A  GL ++  G  +H  + +  I   V+
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + N L+ MY K   L   RR+FD M  R  +SWN M+ GYS+ G+  E ++LF  M   N
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVN 369

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           + KPD +T  ++L  C H G  + G  V   ++    G+E +      +++M  + G + 
Sbjct: 370 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMI--TSGYECDTTASNILINMYAKCGNLL 427

Query: 417 EALEFIKNM 425
            + E    M
Sbjct: 428 ASQEVFSGM 436



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 39  NGQLTKA--LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           NG   +A  L +M    ++     Y  LL+       L  G+ +H  + K  +   + + 
Sbjct: 454 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + D+ K+F+ M+ R++++W  +I++          L +  RM      
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 573

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P+  T  ++L  C+       GK+IH  I K   ES + VG+ L++MY+K G +  +  V
Sbjct: 574 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 633

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           F+ +  +DVV+ TA+IS     G  ++A+  F +++  G++ ++V + +++ A S
Sbjct: 634 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 688


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 345/578 (59%), Gaps = 6/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           YD L+ AC+  +++R  +RV+  M+   + P  Y+  R+++ + KC  + DAR++FDE+ 
Sbjct: 126 YDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIP 185

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN+ S+ ++IS +    +  EA  LF  M    ++    TFA +L + AG     +GKQ
Sbjct: 186 ERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQ 245

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K     + +V   L+DMY+K G I +AR  FEC+PE+  V+   +I+GYA  G 
Sbjct: 246 LHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGY 305

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+ L   ++  G+  +  T + ++   + LA L   KQ H+ ++R    S +V   +
Sbjct: 306 SEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTA 365

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+D YSK G +  +R VFD +  + +ISWNA++ GY+ HG G + V+LF  M   N V P
Sbjct: 366 LVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAAN-VAP 424

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT+LAVLS C++ G+ ++G  +F  + +   G +P   HY C++++LGR G + EA+ 
Sbjct: 425 NHVTFLAVLSACAYSGLSEQGWEIFLSMSEVH-GIKPRAMHYACMIELLGRDGLLDEAIA 483

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+  P + T  +  +LL ACR+  N+++G  V ++L  + PE  GNYV++ N+Y S G+
Sbjct: 484 FIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGK 543

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDR----SHPMREELSAKVKQLSV 536
             +   V E ++ K ++  P  +W+E+    H+F + DR    +  ++ ++  KV +L  
Sbjct: 544 TAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELME 603

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           +  E GY  +   +L DVDE+++E+V   HSEKLA+ +GL+ TPE  P+++ +N RIC +
Sbjct: 604 EISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKN 663

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   +F+S V GR++ +RD +RFHH  EG CSCG YW
Sbjct: 664 CHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 4/286 (1%)

Query: 142 EALNLF-IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
           EA  LF I  +R   +    T+  ++ +C         K+++  ++ + FE   Y+ + +
Sbjct: 105 EAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRI 164

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           L M+ K G I +AR +F+ +PER++ S  +IISG+   G   EA ELF+ +  E      
Sbjct: 165 LLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCET 224

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            T+A +L A +GL ++  GKQ+H   L+  +     +   LIDMYSKCG +  +R  F+ 
Sbjct: 225 HTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFEC 284

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M E+T ++WN ++ GY+ HG   E + L   MR+   V  D  T   ++   +     + 
Sbjct: 285 MPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSG-VSIDQFTLSIMIRISTKLAKLEL 343

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
                  ++  ++GFE EI     +VD   + GRV  A      +P
Sbjct: 344 TKQAHASLI--RNGFESEIVANTALVDFYSKWGRVDTARYVFDKLP 387


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 324/527 (61%), Gaps = 16/527 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFT--FATVLTS 168
           AR++F  M  R+VVSW  M+S  S+     EA  +F+ M +R+    N     FA     
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 158

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            A    F    +    ++           ++++  Y   G + +A   FE +P R++VS 
Sbjct: 159 SAAEEWFRNAPEKGDAVL----------WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSW 208

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVL 287
            A+++GY +    ++A+ LFR +  E  +  N  T +SVL   S L+ALG GKQ+H   +
Sbjct: 209 NAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCM 268

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  +   + +  SL+ MY KCG L+ + ++F  M  R V++WNAM+ GY++HG G+E + 
Sbjct: 269 KLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAIN 328

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M++E  V+P+ +T++AVL+ C H G+ D G+  F  + +   G EP ++HY C+VD
Sbjct: 329 LFERMKDEG-VEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELY-GIEPRVDHYSCMVD 386

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +L RAG++  A++ I++MPFEP  +  G+LL ACRV+ N++  E    +L+E +P++AG 
Sbjct: 387 LLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGA 446

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV L+N+YA A +W+DV+RVR  MK+ AV K PG SWIE+  ++H F ++DR HP    +
Sbjct: 447 YVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLI 506

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             K+ QL+ + K  GYVPD+  VL+DVDE  K ++L+ HSEKLA++FGLI T  G  +R+
Sbjct: 507 HEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRI 566

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCHN AK +SK+  R++ LRD  RFHH   G CSCGDYW
Sbjct: 567 FKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR-S 153
           L T ++  Y     +  A + F+ M  RN+VSW A+++ Y + +H+ +AL LF  M+R +
Sbjct: 176 LWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA 235

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           + +PN  T ++VL  C+       GKQIH   +K     ++ VG+SL+ MY K G +  A
Sbjct: 236 NVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 295

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--S 271
             +F  +  RDVV+  A+ISGYAQ G  +EAI LF +++ EG+  N++T+ +VLTA   +
Sbjct: 296 CKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHT 355

Query: 272 GLAALG 277
           GL   G
Sbjct: 356 GLCDFG 361



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G+++H   +K      + + T L+  Y KC  LS A K+F EM  R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA----FGFELG 178
           +VV+W AMIS Y+Q     EA+NLF RM     EPN  TF  VLT+C       FG    
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCF 365

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + +  L      E  +   S ++D+  +AG++  A  +   +P
Sbjct: 366 EGMQELY---GIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 262 TYASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           T A+    L+G A ALG          R   P   V  N+L+  +   G    +RR+F +
Sbjct: 47  TTATYNCLLAGYARALGRLADARHLFDRIPTPD-AVSYNTLLSCHFASGDADGARRLFAS 105

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG--CSHG--- 375
           M  R V+SWN M+ G SK G   E   +F  M   N     SV++ A++SG  CS     
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRN-----SVSWNAMVSGFACSRDMSA 160

Query: 376 ------GMEDRGLAVFH-----------EIVDCKDGFEP----EIEHYGCVVDMLGRAGR 414
                    ++G AV              +V   + FE      +  +  VV    +   
Sbjct: 161 AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSH 220

Query: 415 VGEALEFIKNMPFE----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
             +AL   + M  E    P A+ L S+L  C     +  G+ + Q  M++
Sbjct: 221 ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 270


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 335/587 (57%), Gaps = 36/587 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G       Y  +L AC     LR G  +H  ++K      +++   LI  Y KC 
Sbjct: 109 EMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCG 168

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL +AR++FDEM  ++VVSW +M++ Y+      +AL +   M     +P+  T A+++ 
Sbjct: 169 CLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMP 228

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A                 ++ E+ +YV                   +F  L  ++++S
Sbjct: 229 AVAN----------------TSSENVLYV-----------------EKIFVNLERKNLIS 255

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I  Y +  L  +A++L+ +++   +  + +T+ASVL A   L+AL  G+++H +V 
Sbjct: 256 WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           + ++   ++L+NSLIDMY++CG L  ++RVFD M  R V SW +++  Y   G G   V 
Sbjct: 316 KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVA 375

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M    +  PDS+ ++A+LS CSH G+ D G   F ++ D      P IEHY C+VD
Sbjct: 376 LFTEMLNSGQA-PDSIAFVAILSACSHSGLLDEGRIYFKQMTD-DYRITPRIEHYACLVD 433

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAGRV EA   IK MP EP   +  +LL +CRV  N+DIG      L+++ PE +G 
Sbjct: 434 LLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGY 493

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA AGRW++VT +R +MK K + K PG S +EL+  +HTF A D SHP  +E+
Sbjct: 494 YVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEI 553

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             ++  L  K KE GYVP+    L+DV+EE KE  L  HSEKLA+ F L+ T E   IR+
Sbjct: 554 YEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRI 612

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCH  AK +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 613 TKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 158/338 (46%), Gaps = 24/338 (7%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K++H++I   N   +  +G  L+  YA  G     R VF+ + +R+VV    +I  Y   
Sbjct: 38  KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              ++ + +FR++   G   +  TY  VL A S    L +G  +H  VL+  +   + + 
Sbjct: 98  HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N LI MY KCG L  +RRVFD M  + V+SWN+M+ GY+ +    + +E+   M E+   
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREM-EDYGQ 216

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           KPD  T  +++   ++   E+  L V    V+ +      +  +  ++ +  +     +A
Sbjct: 217 KPDGCTMASLMPAVANTSSENV-LYVEKIFVNLE---RKNLISWNVMIRVYMKNSLPTQA 272

Query: 419 LEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGE-FVGQRLME-IEPENAGNYVILSN 473
           ++    M     EP A    S+L AC      D+    +G+R+ E +E +     ++L N
Sbjct: 273 VDLYLQMEKCRVEPDAITFASVLPACG-----DLSALLLGRRIHEYVEKKKLCPNLLLEN 327

Query: 474 ----LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
               +YA  G  +D  RV + MK + V      SW  L
Sbjct: 328 SLIDMYARCGCLDDAKRVFDRMKFRDVA-----SWTSL 360



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q     ++M    +E     + ++L AC +   L  G+R+H ++ K    P + L   LI
Sbjct: 271 QAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLI 330

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y +C CL DA+++FD M+ R+V SWT++ISAY        A+ LF  ML S   P+  
Sbjct: 331 DMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSI 390

Query: 161 TFATVLTSCAGAFGFELGK-QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            F  +L++C+ +   + G+     +         I   + L+D+  +AGR+ EA  + + 
Sbjct: 391 AFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQ 450

Query: 220 LP 221
           +P
Sbjct: 451 MP 452


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 338/578 (58%), Gaps = 7/578 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L AC +      G++VHA ++       VY+   ++  Y K   +  AR +FD M 
Sbjct: 127 YPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRML 186

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++ SW  M+S + +   +  A  +F  M R     +  T   +L++C      ++GK+
Sbjct: 187 VRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKE 246

Query: 181 IHSLIIKSNFESHI---YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           IH  ++++     +   ++ +S++DMY     +  AR +FE L  +DVVS  ++ISGY +
Sbjct: 247 IHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEK 306

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   +A+ELF ++ V G + + VT  SVL A + ++AL  G  V S+V++      VV+
Sbjct: 307 CGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVV 366

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +LI MY+ CGSL  + RVFD M E+ + +   M+ G+  HG GRE + +F  M  +  
Sbjct: 367 GTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKG- 425

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVG 416
           V PD   + AVLS CSH G+ D G  +F+++   +D   EP   HY C+VD+LGRAG + 
Sbjct: 426 VTPDEGIFTAVLSACSHSGLVDEGKEIFYKMT--RDYSVEPRPTHYSCLVDLLGRAGYLD 483

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA   I+NM  +P   +  +LL ACR+H NV +     Q+L E+ P+    YV LSN+YA
Sbjct: 484 EAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYA 543

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           +  RWEDV  VR L+ ++ + K P  S++EL++++H F   D SH   +++ AK+K L+ 
Sbjct: 544 AERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNE 603

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + K+AGY PD S VLYDV+EE KEK+L  HSE+LAL F LI T  G  IR+ KNLR+C D
Sbjct: 604 QLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGD 663

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K +SK+  R++ +RD  RFHH  +G CSCG YW
Sbjct: 664 CHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 226/473 (47%), Gaps = 45/473 (9%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           TLL +  N ++L    ++HAH+      R   YL T+L   Y  C  +  A+ +FD++  
Sbjct: 27  TLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVL 86

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           +N   W +MI  Y+       AL L+++ML    +P+ FT+  VL +C      E+G+++
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKV 146

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+L++    E  +YVG+S+L MY K G +  AR VF+ +  RD+ S   ++SG+ + G  
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEA 206

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV---LQ 298
             A E+F  ++ +G + +  T  ++L+A   +  L  GK++H +V+R      V    L 
Sbjct: 207 RGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLM 266

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NS+IDMY  C S++ +R++F+ +  + V+SWN+++ GY K G   + +ELF  M     V
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAV 326

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF----------------------- 395
            PD VT ++VL+ C+       G  V   +V  K G+                       
Sbjct: 327 -PDEVTVISVLAACNQISALRLGATVQSYVV--KRGYVVNVVVGTALIGMYANCGSLVCA 383

Query: 396 ------EPEIEHYGCVVDMLGRA--GRVGEALEFIKNM---PFEPTAAILGSLLGACRVH 444
                  PE     C V + G    GR  EA+     M      P   I  ++L AC   
Sbjct: 384 CRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHS 443

Query: 445 YNVDIGEFVGQRLM---EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             VD G+ +  ++     +EP    +Y  L +L   AG  ++   V E MK K
Sbjct: 444 GLVDEGKEIFYKMTRDYSVEPRPT-HYSCLVDLLGRAGYLDEAYAVIENMKLK 495


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 352/598 (58%), Gaps = 53/598 (8%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCE------------CLSDARKMFDEMRERNVVSW 127
           +HAH++K       +  + LIV Y                CL+              V W
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGA--------PVMW 129

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
            A+IS +++      +   F+ M+R+       T+ +VL++C       LG Q+H  +++
Sbjct: 130 NALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLE 189

Query: 188 SNFESHIYVGSSLLDMYA-------------------------------KAGRIHEARGV 216
           S       V ++L+DMYA                               ++G++  AR +
Sbjct: 190 SGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDL 249

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +PERD ++ TA+I GY Q+G   +A+E FR +Q+  + ++  T  SV+TA + L AL
Sbjct: 250 FDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGAL 309

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+    ++ R  I   V + N+LIDMYSKCGS+  +  VF +M  R   +W A+++G 
Sbjct: 310 ETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGL 369

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           + +G G E +++F  M    +  PD VT++ VL+ C+H G+ D+G   F  + +  +   
Sbjct: 370 AVNGRGEEAIDMFYRMLRALQT-PDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN-IS 427

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P + HYGC++D+LGRAG++ EAL+ I  MP +P + I G+LL +CRV+ N +IGE   +R
Sbjct: 428 PTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAER 487

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHA 516
           L+E++P+N+  Y++LSN+YA + RW+DV R+R+++ EK + K+PG S IE++ I+H F A
Sbjct: 488 LLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVA 547

Query: 517 SDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGL 576
           +DRSHPM +E+ +K++ +    + AGYVPD++ VL +V EE+K+KVL  HSEKLA+TF L
Sbjct: 548 ADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFAL 607

Query: 577 IGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + +     IR++KNLR+C+DCHN  K +SK+YGR+V +RD+ RFHH   G+CSC DYW
Sbjct: 608 LTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 152/343 (44%), Gaps = 36/343 (10%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L+AC   + L  G +VH  ++++   P   +   L+  Y +C  +  A  +F+ M+
Sbjct: 164 YVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQ 223

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT------------------------- 155
            R++ SWT++IS   +      A +LF  M   DT                         
Sbjct: 224 MRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRY 283

Query: 156 ------EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
                   +EFT  +V+T+CA     E G+     + +   +  ++VG++L+DMY+K G 
Sbjct: 284 MQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGS 343

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  A  VF+ +  RD  + TAII G A  G  EEAI++F ++       + VT+  VLTA
Sbjct: 344 IERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTA 403

Query: 270 LSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVI 327
            +    +  G++   S    + I   VV    LID+  + G L  +    D M  +    
Sbjct: 404 CTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNST 463

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
            W  +L     +G   E+ EL      E  + PD+ T   +LS
Sbjct: 464 IWGTLLASCRVYG-NSEIGELAAERLLE--LDPDNSTAYILLS 503



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 166/371 (44%), Gaps = 51/371 (13%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL-- 166
           LS AR + D +  R   + ++ +S +  +    EA+  ++RML     P+ +TF ++L  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGHGAE----EAVAGYVRMLAGGARPDAYTFPSLLKA 60

Query: 167 ---TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY--AKAGRIHEARGVFECLP 221
                 A      +G  IH+ ++K   ES+ +  SSL+ MY     G    A     CL 
Sbjct: 61  AAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLA 120

Query: 222 ERD--VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
                 V   A+ISG+ + G  E +   F  +     ++  VTY SVL+A      L  G
Sbjct: 121 TGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLG 180

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY-------------------------- 313
            QVH  VL   +     ++N+L+DMY++CG +                            
Sbjct: 181 MQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRS 240

Query: 314 -----SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
                +R +FD+M ER  I+W AM+ GY + G  R+ +E F  M +  KV+ D  T ++V
Sbjct: 241 GQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYM-QICKVRADEFTMVSV 299

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--- 425
           ++ C+  G  + G   +  I   + G + ++     ++DM  + G +  AL+  K+M   
Sbjct: 300 VTACAQLGALETG--EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR 357

Query: 426 -PFEPTAAILG 435
             F  TA ILG
Sbjct: 358 DKFTWTAIILG 368



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 55  EMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           ++R +E+   +++ AC     L  G+    +M +   +  V++   LI  Y+KC  +  A
Sbjct: 288 KVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERA 347

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
             +F +M  R+  +WTA+I   +      EA+++F RMLR+   P+E TF  VLT+C  A
Sbjct: 348 LDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHA 407

Query: 173 FGFELGKQIH-SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
              + G++   S+    N    +     L+D+  +AG++ EA    + +P
Sbjct: 408 GLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMP 457


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/532 (41%), Positives = 327/532 (61%), Gaps = 9/532 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMI-----SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           L+ AR++FD +     V W   +             + EA  +F+RM+     P+ +TF 
Sbjct: 83  LAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           ++L +CA A   E G+Q H + +K+    H YV  +L++MYA+ G +  AR +F+ +   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            VVS  A+I+   +  L  EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ +H
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            ++ +  + S V +  +LIDMY+KCGSL  +  VF +M  R   +W+ M+V Y+ HG GR
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           E + +F  M+++  +KPD VT+L VL  CSH GM   GL  F  + +   G    I+HYG
Sbjct: 323 EAISMFEEMKKQG-MKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREY--GIVSGIKHYG 379

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           CV D+L R+G++  A +FI  +P +PTA +  +LL AC  H +VD+G+ V +R++E++  
Sbjct: 380 CVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS 439

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           + G+YVI SNL A+ GRWE++  VR+LM EK V K PG S IE+D ++H F A D SHP 
Sbjct: 440 HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPH 499

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
            +E    V ++  + K  GYVP+ S V + ++ EE+K   L  HSEKLA++FGL+ T  G
Sbjct: 500 SQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPG 559

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             +R++KNLR+C DCH+ AK VS V+ R++ LRD NRFHH  +G CSCGDYW
Sbjct: 560 TTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC + R    G++ H   +K       Y+   LI  Y +C  +  AR MFD M   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVS+ AMI+A  + +   EAL LF  M     +P   T  +VL++CA     ELG+ IH
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I K   +S + V ++L+DMYAK G + +A GVF+ +  RD  + + ++  YA  G   
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI +F +++ +GM  + VT+  VL A S    +  G Q    +  + I S +     + 
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVT 382

Query: 303 DMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVE 347
           D+ ++ G L  + +  D +  + T I W  +L   + HG   MG+ V E
Sbjct: 383 DLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFE 431


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 356/631 (56%), Gaps = 63/631 (9%)

Query: 64   LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
            +L AC     L   +++H ++ +      V L   LI  Y+K   L  AR++FD M  RN
Sbjct: 781  VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 840

Query: 124  VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF--------------------- 162
              SW +MIS+Y+      +A +LF  +  SD +P+  T+                     
Sbjct: 841  TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 900

Query: 163  ----------ATVLTSCAGA---FGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
                      ++ +TS   A    GF  +GK+ H  ++++ F+  +YVG+SL+DMY K  
Sbjct: 901  RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNH 960

Query: 209  RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG----------MIS 258
             +  A+ VF+ +  R++ +  +++SGY+  G+ E+A+ L  +++ EG          MIS
Sbjct: 961  SLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 1020

Query: 259  NYVTY-----------ASV---LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
             Y  +           AS+   L A + L+ L  GK++H   +R      V +  +LIDM
Sbjct: 1021 GYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDM 1080

Query: 305  YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
            YSK  SL  + +VF  +  +T+ SWN M++G++  G+G+E + +FN M++   V PD++T
Sbjct: 1081 YSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG-VGPDAIT 1139

Query: 365  YLAVLSGCSHGGMEDRGLAVFHE-IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
            + A+LS C + G+   G   F   I D +    P +EHY C+VD+LGRAG + EA + I 
Sbjct: 1140 FTALLSACKNSGLIGEGWKYFDSMITDYR--IVPRLEHYCCMVDLLGRAGYLDEAWDLIH 1197

Query: 424  NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
             MP +P A I G+LLG+CR+H N+   E   + L ++EP N+ NY+++ NLY+   RWED
Sbjct: 1198 TMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWED 1257

Query: 484  VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
            +  +RELM    V      SWI+++Q +H F + ++ HP   ++  ++ QL  + K+ GY
Sbjct: 1258 MDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGY 1317

Query: 544  VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
            VPD++CV  ++DE +K+K+LL H+EKLA+T+GLI    G PIRVIKN RIC DCH+ AK+
Sbjct: 1318 VPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKY 1377

Query: 604  VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +S V  R++ LRD  RFHH  EG CSC D+W
Sbjct: 1378 ISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 166/364 (45%), Gaps = 36/364 (9%)

Query: 48   EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
            E+   G+    E Y   L  C     +  G  +H  +IK  +   VYLR  L+ FY +C 
Sbjct: 664  ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 108  CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
             L  A ++F EM     + W   I    Q     + + LF +M  S  +    T   VL 
Sbjct: 724  GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 168  SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            +C         KQIH  + +   +S + + + L+ MY+K G++  AR VF+ +  R+  S
Sbjct: 784  ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 228  CTAIISGYAQLGL-----------------------------------DEEAIELFRKLQ 252
              ++IS YA LG                                     EE + + +++Q
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 253  VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             EG   N  +  SVL A+S L  L  GK+ H +VLR      V +  SLIDMY K  SL 
Sbjct: 904  GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 313  YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
             ++ VFDNM  R + +WN+++ GYS  GM  + + L N M +E  +KPD VT+  ++SG 
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEG-IKPDLVTWNGMISGY 1022

Query: 373  SHGG 376
            +  G
Sbjct: 1023 AMWG 1026



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 26/297 (8%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++L A      L  G+  H ++++  +   VY+ T LI  Y K   L  A+ +FD M+ R
Sbjct: 916  SVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNR 975

Query: 123  NVVSWTAMISAYSQKAHSFEALNLFIRM------------------------LRSDTEPN 158
            N+ +W +++S YS K    +AL L  +M                         R    PN
Sbjct: 976  NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPN 1035

Query: 159  EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
              +   +L +CA     + GK+IH L I++ F   ++V ++L+DMY+K+  +  A  VF 
Sbjct: 1036 SASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFR 1095

Query: 219  CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             +  + + S   +I G+A  GL +EAI +F ++Q  G+  + +T+ ++L+A      +G 
Sbjct: 1096 RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGE 1155

Query: 279  G-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAML 333
            G K   S +  + I   +     ++D+  + G L  +  +   M  +   + W A+L
Sbjct: 1156 GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 1212



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/262 (19%), Positives = 111/262 (42%), Gaps = 13/262 (4%)

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY-AQLGLDEEAIELFRKLQVEG 255
             +L+  Y   G    A  VF     R+ +   + +  + +  G     +E+F++L  +G
Sbjct: 610 AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 669

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           ++ +   Y+  L   + +  +  G ++H  +++      V L+ +L++ Y +C  L  + 
Sbjct: 670 VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 729

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VF  M     + WN  ++   +    ++ VELF  M + + +K ++ T + VL  C   
Sbjct: 730 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKM 788

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA---- 431
           G  +    +   +   + G + ++     ++ M  + G++  A     +M    T+    
Sbjct: 789 GALNAAKQIHGYVF--RFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNS 846

Query: 432 -----AILGSLLGACRVHYNVD 448
                A LG L  A  + Y ++
Sbjct: 847 MISSYAALGFLNDAWSLFYELE 868


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 339/554 (61%), Gaps = 23/554 (4%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           Y  + L+  Y+ C    DAR+ FDE+ + N V  TAM S Y +    + +L LF  M+ S
Sbjct: 130 YSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIAS 189

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQI---------HSLIIKSNFESHIYVGSSLLDMY 204
           D+       A+V+   A    F    ++         H+LI K  FE +  V +++LD Y
Sbjct: 190 DS-------ASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSY 242

Query: 205 AKAGR--IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMIS-NY 260
           AK G   +  AR VF+ + ERDVVS  ++I+ YAQ G+  EAI L+ K L V G I  N 
Sbjct: 243 AKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNA 301

Query: 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
           V  ++VL A +   A+  GK++H+ V+R  +   V +  S++DMYSKCG +  + R F  
Sbjct: 302 VALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRK 361

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           + E+ ++SW+AM+ GY  HG G+E +E+F  M+    ++P+ +T+++VL+ CSH G+ D 
Sbjct: 362 IKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG-LRPNYITFISVLAACSHAGLLDE 420

Query: 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           G   ++  +  + G E  +EHYGC+VD+LGRAG + EA   IK M  +P AAI G+LL A
Sbjct: 421 G-RYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR+H NV++ E   +RL E++  N+G YV+LSN+YA A  W+DV R+R L+K + + K P
Sbjct: 480 CRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPP 539

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G S  EL   ++ F+  D+SHP   E+ + +++L  + +EAGYVP+   VL+D+DEE+KE
Sbjct: 540 GYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKE 599

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
             L  HSEKLA+ F L+ +   + I +IKNLR+C DCH   KF++K+  R++ +RD  RF
Sbjct: 600 SALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRF 659

Query: 621 HHIVEGTCSCGDYW 634
           HH  +G CSC DYW
Sbjct: 660 HHFKDGLCSCRDYW 673



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +   ++ G+R+H  +++      VY+ T ++  Y+KC  +  A + F +++E+
Sbjct: 306 AVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK 365

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N++SW+AMI+ Y       EAL +F  M RS   PN  TF +VL +C+ A   + G+  +
Sbjct: 366 NILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWY 425

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEA 213
           + + +    E+ +     ++D+  +AG + EA
Sbjct: 426 NAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 457


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 329/537 (61%), Gaps = 12/537 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++V Y +   +  A   F++M  +++ SW  +IS ++Q     +A +LF  M     E N
Sbjct: 142 MLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKN 197

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLI-IKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
             +++ +++        E  ++++  + +KS     + V +++L  Y K G++  A  +F
Sbjct: 198 GVSWSAMISGYVEHGDLEAAEELYKNVGMKS-----VVVETAMLTGYMKFGKVELAERIF 252

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           + +  +++V+  ++I+GY +    E+ +++F+ +    +  N ++ +SVL   S L+AL 
Sbjct: 253 QRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALP 312

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+Q+H  V +  +        SLI MY KCG L  + ++F  M  + VI+WNAM+ GY+
Sbjct: 313 LGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYA 372

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           +HG GR+ + LF+ MR    +KPD +T++AV+  C+H G  D G+  F  +   + G E 
Sbjct: 373 QHGAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK-EFGIEA 430

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           +  HY CV+D+LGRAGR+ EA+  IK MPF P AAI G+LLGACR+H N+D+ EF  + L
Sbjct: 431 KPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNL 490

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           + ++P +A  YV L+N+YA+  +W+ V +VR++MKE  V K PG SWIE+  + H F +S
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSS 550

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           DR HP    +  K+ +L  K K AGYVPD+   L+DV+EE KEK+LL HSEKLA+ FGL+
Sbjct: 551 DRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLM 610

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T  G PIRV KNLR+C DCH   KF+S +  R++ +RD  RFHH   G CSCGDYW
Sbjct: 611 KTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 6/277 (2%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
              NGQ+ KA  ++ ++  E     +  +++  V    L   + ++    K      V +
Sbjct: 177 FAQNGQMQKAF-DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMKSVVV 231

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T ++  Y K   +  A ++F  M  +N+V+W +MI+ Y +   + + L +F  M+ S  
Sbjct: 232 ETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN  + ++VL  C+      LG+Q+H L+ KS         +SL+ MY K G +  A  
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +F  +P +DV++  A+ISGYAQ G   +A+ LF K++   M  +++T+ +V+ A +    
Sbjct: 352 LFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGF 411

Query: 276 LGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
           +  G Q    + + F I +  V    +ID+  + G L
Sbjct: 412 VDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRL 448



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-HGMGREV 345
           L  +  S VV  N  I  + +   L  +R VF+ MS RT ++WN ML GY+K  G  +E 
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
            ELF+ + E     PDSV+Y  +L            LA F+++   KD     I  +  +
Sbjct: 125 HELFDKIPE-----PDSVSYNIMLVCYLRSYGVKAALAFFNKM-PVKD-----IASWNTL 173

Query: 406 VDMLGRAGRVGEALEFIKNMP 426
           +    + G++ +A +    MP
Sbjct: 174 ISGFAQNGQMQKAFDLFSVMP 194



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 23/161 (14%)

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           DVVS    I+ + +    E A  +F K+ V       VT+ ++L+  + +A    GK   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVR----TTVTWNTMLSGYTKVA----GKVKE 123

Query: 284 SHVLRFEIP-----SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           +H L  +IP     SY ++    +  Y    +L +    F+ M  + + SWN ++ G+++
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAF----FNKMPVKDIASWNTLISGFAQ 179

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGME 378
           +G  ++  +LF++M E+N      V++ A++SG   HG +E
Sbjct: 180 NGQMQKAFDLFSVMPEKN-----GVSWSAMISGYVEHGDLE 215


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 367/640 (57%), Gaps = 45/640 (7%)

Query: 35  TLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPV 93
           + CS+       I    + +++   +  +LL   +NQR  L   Q++HA ++        
Sbjct: 50  SFCSSNTFPSISIPTNPIPIDLPNPQTFSLL---LNQRPKLSPLQQIHAQVVTQALSSNA 106

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERN--VVSWTAMISAYSQKAHSFEALNLFIRML 151
            L   LI  Y   +   +AR +FD     +  +  W  MI  YS+  +S E ++LF+RML
Sbjct: 107 SLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRML 166

Query: 152 RSDTE----PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
             D      P+E+TF  V+TSC+       G+ +H +++KS FES++YVG+S+++M +  
Sbjct: 167 TLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVF 226

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--------- 258
            R+ +AR VF  + ERDV S T+++ GYA+ G  + A ELF  + V   +S         
Sbjct: 227 ARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFL 286

Query: 259 -----------------------NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
                                  N      VL+A + L AL  G  +H ++ +  I    
Sbjct: 287 GCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSS 346

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            +  +LIDMY+KCG +  + RVF+ + +R V+S+ +M+ G S HG+G++ + +F  M +E
Sbjct: 347 NISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDE 406

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           N V P+ +T L VL+GCSH G+ + G ++   + +   G  P+IEHYGC +D+LGRAG +
Sbjct: 407 N-VMPNEITILGVLNGCSHSGLVEEGSSILANM-ESLWGIAPKIEHYGCYIDLLGRAGYL 464

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE-PENAGNYVILSNL 474
             ALE +K MP EP   I  +LL A R+H+NV++GE +   + +++  ++ G  V+LSNL
Sbjct: 465 ERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNL 524

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YAS GRWE VT +R+LM ++     PG SWIE++ ++H F  +D+ HP   E+  K+ ++
Sbjct: 525 YASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEI 584

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
             +  + GY  +   V +D++EE+KE+ +  HSEKLA+ FGL+ T  G  IR++KNLR C
Sbjct: 585 LKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTC 644

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH+  K +S+VYGR++ +RD++RFH  +EG CSC D+W
Sbjct: 645 EDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 358/607 (58%), Gaps = 18/607 (2%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTR 98
           G  + AL   A + +      + T L+AC +   L+ G+ +HA +  +   RP V L T 
Sbjct: 121 GHPSTALHLFAKMDVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTA 180

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEP 157
           +   Y KC  LS A+ +FD +  +NVVSW A+I+AY+Q  HS  +AL+LF +M      P
Sbjct: 181 IFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRP 240

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE---SHIYVGSSLLDMYAKAGRIHEAR 214
              TF  VL +C      E   +IH+ I+++  +     + V ++LL+MYAK G +  AR
Sbjct: 241 CRATFVGVLGACNDVTSLE---KIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVAR 297

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +F  +  RD VS   +I+ +AQ GL +E+I++FR++ +EG+  +  T+ASV+TA S   
Sbjct: 298 DIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCG 357

Query: 275 ALGHGKQVHSHVL------RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           AL  GK++H  V+      +  +P+ VV++ +L+ MY KCG+L  ++ VF  M+ +  +S
Sbjct: 358 ALEFGKRIHKRVVEPVLGRKCCLPN-VVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVS 416

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WNAML   +  G G E          E  V+ DS ++++VL  CSH GM +     F  +
Sbjct: 417 WNAMLAACAHQGQGDEAAAFLRAAACEG-VELDSASFISVLIACSHSGMLEVAYDHFQLM 475

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           +   D   P  E+Y C+VD+L R+GR+G+A E + +MPF P A    +LLG CRV  +++
Sbjct: 476 LSDFD-LVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLE 534

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK-DPGRSWIEL 507
                 ++   +EP+N   Y +LS+LY++ G+ +++  +R  MKE+ + K  PGRS IE+
Sbjct: 535 NAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEV 594

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
              +H F A D SHP  +++  ++  L+V+ K+AG+VP    V++D+  E KE++L  HS
Sbjct: 595 HGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHS 654

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLA+ FGLI T  G P+ V+KNLR+C DCH   K +SK+  R +++RD NRFH    GT
Sbjct: 655 EKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGT 714

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 715 CSCGDYW 721



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 222/424 (52%), Gaps = 21/424 (4%)

Query: 27  PPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86
           P      K  CS+   ++    + +L  E++ + +   + +C +  ++     +H  + +
Sbjct: 13  PTIATTRKNACSSSSSSRKHDPLDSLEREIQSDSFAAAIRSCKDSNSV---SIIHQKITR 69

Query: 87  TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNL 146
                  YL   L++   K   L +AR +FD ++ +N+ SW  +ISAY+ + H   AL+L
Sbjct: 70  AGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHL 129

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYA 205
           F +M   D  P   TFAT L++C+     + G++IH+ I  S      + + +++  MYA
Sbjct: 130 FAKM---DVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYA 186

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD-EEAIELFRKLQVEGMISNYVTYA 264
           K G +  A+ VF+ +P ++VVS  A+I+ YAQ G    +A++LF K+   G+     T+ 
Sbjct: 187 KCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFV 246

Query: 265 SVLTALSGLAALGHGKQVHSHV----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            VL A + + +L   +++H+ +    L+F++   V +QN+L++MY+KCGSL  +R +F  
Sbjct: 247 GVLGACNDVTSL---EKIHARIVETGLQFDVRD-VGVQNALLNMYAKCGSLEVARDIFRK 302

Query: 321 MSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380
           M  R  +S N M+  +++ G+G+E +++F  M  E  +  D  T+ +V++ CS  G  + 
Sbjct: 303 MQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEG-LPQDDTTFASVITACSCCGALEF 361

Query: 381 GLAVFHEIVDCKDGFE---PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
           G  +   +V+   G +   P +     +V M G+ G + +A    K M  + + +   ++
Sbjct: 362 GKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVS-WNAM 420

Query: 438 LGAC 441
           L AC
Sbjct: 421 LAAC 424


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 326/546 (59%), Gaps = 12/546 (2%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF-IR 149
           P       L+  +  C  +  AR++F  M  ++V SW  M+S  S+   S EA  +F I 
Sbjct: 75  PDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIM 134

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
            +R+    N    A    +C+G  G         L   +  ++   + ++++  Y   G 
Sbjct: 135 PVRNAVSWNAMVAAL---ACSGDMG-----AAEDLFRNAPEKTDAILWTAMVSGYMDTGN 186

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           + +A   F  +P R++VS  A+++GY +    ++A+ +F+ +  + ++  N  T +SVL 
Sbjct: 187 VQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLL 246

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
             S L+ALG G+QVH   ++  +   V +  SL+ MY KCG L  + +VFD MS + +++
Sbjct: 247 GCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVA 306

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WNAM+ GY++HG G + ++LF  M++E  V PD +T LAVL+ C H G+ D G+  F  +
Sbjct: 307 WNAMISGYAQHGGGMQAIKLFEKMKDEGVV-PDWITLLAVLTACIHTGLCDFGIQCFETM 365

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +     EP+I+HY C+VD+L RAG +  A+  I +MPFEP  +  G+LL ACRV+ N++
Sbjct: 366 QEAYK-IEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLE 424

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
             EF  ++L+E +P+NAG YV L+N+YA A +W DV+RVR  MK+ AV K PG SW+E+ 
Sbjct: 425 FAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIK 484

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            + H F ++DR HP    +  K+ +L +  K  GYVPD+   L+DV++  K ++L+ HSE
Sbjct: 485 GVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSE 544

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FGLI T  G  +R+ KNLRIC DCHN AK +SK+  R++ LRD  RFHH   G C
Sbjct: 545 KLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHC 604

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 605 SCGDYW 610



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G++VH   +K      V + T L+  Y KC  L+DA K+FDEM  +
Sbjct: 243 SVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK 302

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++V+W AMIS Y+Q     +A+ LF +M      P+  T   VLT+C      + G Q  
Sbjct: 303 DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 362

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             + ++   E  I   S ++D+  +AG +  A  +   +P
Sbjct: 363 ETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMP 402



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 100/260 (38%), Gaps = 46/260 (17%)

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           SGL  L   +++   +   +  SY    N+L+  +  CG +  +RRVF  M  + V SWN
Sbjct: 57  SGLIRLADARRLFDSIPHPDTVSY----NTLLSCHFACGDIDGARRVFSTMPVKDVTSWN 112

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKV---------------------------KPDSV 363
            M+ G SK+G   E   +F +M   N V                           K D++
Sbjct: 113 TMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAI 172

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP--EIEHYGCVVDMLGRAGRVGEALEF 421
            + A++SG    G   + +  F        G  P   +  +  VV    +  R  +AL  
Sbjct: 173 LWTAMVSGYMDTGNVQKAMEFF--------GAMPVRNLVSWNAVVAGYVKNSRADDALRV 224

Query: 422 IKNMP----FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE-PENAGNYVILSNLYA 476
            K M      +P A+ L S+L  C     +  G  V Q  M++    N      L ++Y 
Sbjct: 225 FKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYC 284

Query: 477 SAGRWEDVTRVRELMKEKAV 496
             G   D  +V + M  K +
Sbjct: 285 KCGDLNDACKVFDEMSTKDI 304


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 340/525 (64%), Gaps = 5/525 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSC 169
           AR +F ++   N+ SW ++I  YSQ    S E + LF ++  +    PN FT A VL +C
Sbjct: 43  ARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKAC 102

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A    F  G Q+HS ++K  F S ++V +SL++ Y K   I  AR VFE +P R++V+ T
Sbjct: 103 AIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWT 162

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A+ISG+A++G  +EA+ELFR++Q  G+  + +T  SV++A +   AL  G  +H+++ ++
Sbjct: 163 AMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKY 222

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + + + L  +L+DMY+KCG +  +++VF +M  +   +W++M++G++ HG+ ++ ++ F
Sbjct: 223 FVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAF 282

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M E  +V PD VT+LAVLS C+HGG+  RG   +  +++   G EP +EHYGC VD+L
Sbjct: 283 QQMLE-TEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEF--GIEPSVEHYGCKVDLL 339

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            R+G V EA      M   P AA   SLL  C+    +++GE V + L+E+EP NA NY+
Sbjct: 340 CRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYI 399

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           ++SNLY+S  +WE ++ +R++MKEK +   PG S IE+D ++H F   D+SHP  + L  
Sbjct: 400 MISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLRE 459

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
            ++++S++ +++GY P +S VL+ V +E+KE  L  HSE+ A+ +GL+ T     IRV+K
Sbjct: 460 FMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVK 519

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+CVDCH   K +SK+Y R++ +RD+ RFH  ++GTCSC D+W
Sbjct: 520 NLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 158/276 (57%), Gaps = 1/276 (0%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC        G +VH+H++K  +   ++++T L+ FY KCE +  ARK+F+EM  RN
Sbjct: 98  VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+WTAMIS +++     EA+ LF  M ++  +P+  T  +V+++CA A   ++G  +H+
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHA 217

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I K    + + + ++L+DMYAK G I  A+ VF  +P +D  + +++I G+A  GL ++
Sbjct: 218 YIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQD 277

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           AI+ F+++    +  ++VT+ +VL+A +    +  G++  S +L F I   V      +D
Sbjct: 278 AIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVD 337

Query: 304 MYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSK 338
           +  + G +  + R+   M       +W ++L+G  K
Sbjct: 338 LLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKK 373



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 85/166 (51%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++       ++++AC     L  G  +HA++ K      + L T L+  Y KC 
Sbjct: 183 EMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCG 242

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+  A+++F  M  ++  +W++MI  ++    + +A++ F +ML ++  P+  TF  VL+
Sbjct: 243 CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLS 302

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +CA       G++  SL+++   E  +      +D+  ++G + EA
Sbjct: 303 ACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEA 348



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 280 KQVHSHVLRFEIP--SYVVLQNSLIDM--YSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +Q+H+H+L   +P  S+    + ++     S  G++ Y+R VF  +    + SWN+++ G
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKG 64

Query: 336 YSK-HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           YS+ H + +E + LF  + E     P+S T   VL  C+       GL V   ++  KDG
Sbjct: 65  YSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVL--KDG 122

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           F   +     +V+  G+   +G A +  + MP     A    + G  RV
Sbjct: 123 FGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARV 171


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 345/590 (58%), Gaps = 9/590 (1%)

Query: 45   ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
            AL+EM   G+      + ++L++C   +     Q +   ++++ YR    L T LI  + 
Sbjct: 528  ALMEMLQGGVLPDALSFTSVLSSCYCSQE---AQVLRMCILESGYRSAC-LETALISMHG 583

Query: 105  KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
            +C  L  AR +F+EM   +VVSWTAM+SA ++     E  NLF RM      P++FT AT
Sbjct: 584  RCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLAT 643

Query: 165  VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
             L +C  +    LGK IH+ + +   E+ I V ++LL+MY+  G   EA   FE +  RD
Sbjct: 644  TLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARD 703

Query: 225  VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            +VS   + + YAQ GL +EA+ LFR++Q+EG+  + +T+++ L    G A +  GK  H+
Sbjct: 704  LVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHA 763

Query: 285  HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
                  + S V +   L+ +Y+KCG L  +  +F    + TV+  NA++   ++HG   E
Sbjct: 764  LAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEE 823

Query: 345  VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
             V++F  M++E  V+PD  T ++++S C H GM + G + F  + +   G  P +EHY C
Sbjct: 824  AVKMFWKMQQEG-VRPDVATLVSIISACGHAGMVEEGCSSFLTMKE-YFGISPTLEHYAC 881

Query: 405  VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
             VD+LGRAG++  A + I+ MPFE    +  SLLG C++  + ++GE   QR++E++P N
Sbjct: 882  FVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHN 941

Query: 465  AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            +  +V+LSN+Y + G+W+D    R+ M ++ V   PG SW E+ + +H F A DRSHP  
Sbjct: 942  SAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKT 1001

Query: 525  EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
            +E+   + +L +  + AGY  D      DV++E KEK L  HSE++A+ FGLI TP    
Sbjct: 1002 DEIYVVLDKLELLMRRAGYEADKG---LDVEDELKEKALGYHSERIAIAFGLIATPPETT 1058

Query: 585  IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            ++++KNLR+C DCH   K++S V GR++ +RD  RFHH   GTCSC D W
Sbjct: 1059 LKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 212/426 (49%), Gaps = 16/426 (3%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
            +EY  LL +CV+   L  G+  H  +        ++L   LI  Y +C  L +A  +F 
Sbjct: 25  LQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M ERNVVSWTA+ISA +Q      A  LF  M L S   PN +T   +L +CA +    
Sbjct: 85  KMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLA 144

Query: 177 LGKQIHSLIIKSNFE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +G+ IH++I +   E    +   VG+++++MYAK G + +A  VF  +PE+DVVS TA+ 
Sbjct: 145 IGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMA 204

Query: 233 SGYAQ-LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
             YAQ      +A+ +FR++ ++ +  N +T+   +TAL    +L  G  +HS +    +
Sbjct: 205 GAYAQERRFYPDALRIFREMLLQPLAPNVITF---ITALGACTSLRDGTWLHSLLHEASL 261

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT---VISWNAMLVGYSKHGMGREVVEL 348
               +  N+LI+MY KCG    +  VF  M+ R    ++SWNAM+    + G   + + +
Sbjct: 262 GFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  +R E  ++P+SVT + +L+  +  G++      FH  +  + G+  ++     ++ M
Sbjct: 322 FRRLRLEG-MRPNSVTLITILNALAASGVDFGAARGFHGRI-WESGYLRDVVIGNAIISM 379

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC--RVHYNVDIGEFVGQRLMEIEPENAG 466
             + G    A    + + ++       ++LGA   R  +   +  F    L  I+P    
Sbjct: 380 YAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS 439

Query: 467 NYVILS 472
              IL+
Sbjct: 440 FIAILN 445



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 213/411 (51%), Gaps = 13/411 (3%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPV--YL 95
           S G++      M   G++     +  +LNAC N   L  G+++H+ +I T  R  V   +
Sbjct: 417 SFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS-LILTRRRDYVESSV 475

Query: 96  RTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
            T L+  Y KC  +S+A  +F EM    R++V+W  M+ AY+Q   S EA    + ML+ 
Sbjct: 476 ATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQG 535

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
              P+  +F +VL+SC   +  +  + +   I++S + S   + ++L+ M+ +   + +A
Sbjct: 536 GVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQA 591

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R VF  +   DVVS TA++S  A+    +E   LFR++Q+EG+I +  T A+ L      
Sbjct: 592 RSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLAS 651

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
             LG GK +H+ V    + + + ++N+L++MYS CG    +   F+ M  R ++SWN M 
Sbjct: 652 TTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMS 711

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
             Y++ G+ +E V LF  M+ E  VKPD +T+   L+      +   G  +FH +   + 
Sbjct: 712 AAYAQAGLAKEAVLLFRQMQLEG-VKPDKLTFSTTLNVSGGSALVSDG-KLFHALA-AES 768

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           G + ++     +V +  + G++ EA+   +    + T  +L +++GA   H
Sbjct: 769 GLDSDVSVATGLVKLYAKCGKLDEAMSLFRG-ACDWTVVLLNAIIGALAQH 818



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 177/374 (47%), Gaps = 24/374 (6%)

Query: 63  TLLNACVNQRTLRGGQR-VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           T+LNA        G  R  H  + ++ Y   V +   +I  Y KC   S A  +F  +R 
Sbjct: 339 TILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRW 398

Query: 122 R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + +V+SW  M+ A   +    + +N F  ML +  +PN+ +F  +L +C+ +   + G++
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRK 458

Query: 181 IHSLII---KSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPERDVVSCTAIISGY 235
           IHSLI+   +   ES   V + L+ MY K G I EA  VF+   LP R +V+   ++  Y
Sbjct: 459 IHSLILTRRRDYVESS--VATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAY 516

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI--PS 293
           AQ    +EA     ++   G++ + +++ SVL++        +  Q  + VLR  I    
Sbjct: 517 AQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-------YCSQ-EAQVLRMCILESG 568

Query: 294 Y--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
           Y    L+ +LI M+ +C  L  +R VF+ M    V+SW AM+   +++   +EV  LF  
Sbjct: 569 YRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRR 628

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M+ E  V PD  T    L  C        G  V H  V  + G E +I     +++M   
Sbjct: 629 MQLEG-VIPDKFTLATTLDTCLASTTLGLG-KVIHACVT-EIGLEADIAVENALLNMYSN 685

Query: 412 AGRVGEALEFIKNM 425
            G   EAL F + M
Sbjct: 686 CGDWREALSFFETM 699



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           +R D   +   +  +L SC  +     GK  H LI  +  E H+++G+ L++MY + G +
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTA 269
            EA  +F  + ER+VVS TA+IS  AQ G    A  LFR + +E   + N  T  ++L A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 270 LSGLAALGHGKQVHSHVLRFEI----PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            +    L  G+ +H+ +    +     +  ++ N++I+MY+KCGSL  +  VF  + E+ 
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKD 196

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREE--NKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           V+SW AM   Y++    R   +   + RE     + P+ +T++  L  C+   + D G  
Sbjct: 197 VVSWTAMAGAYAQE--RRFYPDALRIFREMLLQPLAPNVITFITALGACT--SLRD-GTW 251

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           +   + +   GF+P   +   +++M G+ G    A    K M 
Sbjct: 252 LHSLLHEASLGFDPLASN--ALINMYGKCGDWEGAYSVFKAMA 292


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 339/572 (59%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T +++C +Q  + G Q  H + +K+      Y++  LI  Y+KC  +  A ++   +   
Sbjct: 129 TAISSCDSQMYVEGKQ-CHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGN 187

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++  +  +++   Q  H  EA+++   ++    E N  T+ T+   CA      LGKQ+H
Sbjct: 188 DIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVH 247

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++KS+ +  +Y+GSS++DMY K G +   R  F+ L  R+VVS T+II+ Y Q    E
Sbjct: 248 AQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFE 307

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ LF K++++ +  N  T A +  + +GL+AL  G Q+H+   +  +   V++ N+LI
Sbjct: 308 EALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALI 367

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            MY K G +  ++ VF NM+   +I+WNA++ G+S HG+G+E + +F  M    + +P+ 
Sbjct: 368 IMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGE-RPNY 426

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ V+  C+H  + D G   F+ ++  +    P +EHY C+V +L R+GR+ EA  F+
Sbjct: 427 VTFIGVILACAHLKLVDEGFYYFNHLMK-QFRIVPGLEHYTCIVGLLSRSGRLDEAENFM 485

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++           +LL AC VH + D G  + + L+++EP + G Y++LSN++A   RW+
Sbjct: 486 RSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWD 545

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  +R+LM+E+ V K+PG SW+E+  + H F + D  HP    +   VK L  K +  G
Sbjct: 546 HVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLG 605

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YVPD+  VL+D+++EQK   L  HSEKLA+ +GL+ TP GAPI VIKNLR+C DCH   K
Sbjct: 606 YVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIK 665

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SKV  R + +RD NRFHH   G CSCGDYW
Sbjct: 666 LISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTC--YR-PPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           LL    + + L+ G+ +HAH+  T   YR   V     LI  Y KC+ +S ARK+FD M 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGK 179
            RNVVSW+A+++ Y Q  +  E   LF +M+  D   PNE+  AT ++SC      E GK
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE-GK 143

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q H   +KS  E H YV ++L+ +Y+K   +  A  +   +P  D+     +++G  Q  
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHT 203

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+++ + +  EG+  N  TY ++    + L  +  GKQVH+ +L+ +I   V + +
Sbjct: 204 HMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGS 263

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           S+IDMY KCG++   R  FD +  R V+SW +++  Y ++    E + LF+ M E + + 
Sbjct: 264 SIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKM-EIDCIP 322

Query: 360 PDSVTYLAVLSGCSHG 375
           P+  T +AVL   + G
Sbjct: 323 PNEYT-MAVLFNSAAG 337



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 5/300 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+E     Y T+   C + + +  G++VHA M+K+     VY+ + +I  Y KC  +   
Sbjct: 219 GIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSG 278

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R  FD ++ RNVVSWT++I+AY Q     EALNLF +M      PNE+T A +  S AG 
Sbjct: 279 RTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGL 338

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
               LG Q+H+   KS  + ++ VG++L+ MY K+G I  A+ VF  +   ++++  AII
Sbjct: 339 SALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAII 398

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEI 291
           +G++  GL +EA+ +F+ +   G   NYVT+  V+ A + L  +  G    +H+++ F I
Sbjct: 399 TGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRI 458

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVF-DNMSERTVISWNAMLVG---YSKHGMGREVVE 347
              +     ++ + S+ G L  +      +     V+SW  +L     +  +  GR++ E
Sbjct: 459 VPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAE 518



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 276 LGHGKQVHSHVLRFEIPSY----VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           L  G+ +H+H L     +Y    V   NSLI++Y KC  ++ +R++FD+M  R V+SW+A
Sbjct: 35  LKFGRTIHAH-LTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSA 93

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG----GMEDRGLAVFHE 387
           ++ GY ++G   EV ELF  M  ++ + P+       +S C       G +  G A+   
Sbjct: 94  LMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEGKQCHGYAL--- 150

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
               K G E        ++ +  +   VG A++ +  +P
Sbjct: 151 ----KSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP 185


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 347/559 (62%), Gaps = 6/559 (1%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           ++H   ++  +   +++ + L   Y+K   L +A ++FD+M +++ V+WTAMI  Y++  
Sbjct: 140 QLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNG 199

Query: 139 HSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
           +  EA  +  R +R +     ++    +VL++  G     L + IHS ++KS FE  + V
Sbjct: 200 N-LEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAV 258

Query: 197 GSSLLDMYAKAGRIHEARGVFEC-LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
            ++L DMYAKA  +  A  V +      +VVS T++I GY +    E+A+ +F +L+ +G
Sbjct: 259 RNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQG 318

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N  T++S++   +  A L  G Q+H+ V++  + S   + ++L+DMY KCG ++ S 
Sbjct: 319 VEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSI 378

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           ++F  +   T I+WNA +   ++HG GRE +  F+ M   + ++P+ +T++++L+ CSH 
Sbjct: 379 QLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRM-TSSGIRPNHITFVSLLTACSHA 437

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ D GL  F+ + D   G EP+ EHY C++DM GRAGR+ EA +FI  MP +P A    
Sbjct: 438 GLVDEGLKYFYSMKD-HHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWC 496

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           SLLGACR+  N ++GE     +M++EP+N G +V LS +YAS G+WEDV  VR+LM++  
Sbjct: 497 SLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNR 556

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           + K PG SW++ ++  H F + D SHP +E++  K+++L  + KE GYVPD   +  +++
Sbjct: 557 IKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLE 616

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           +  K+++L  HSE++A+ F LI  P   PI V KNLRIC DCH+  KF+SKV  R + +R
Sbjct: 617 DTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVR 676

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D +RFHH V+G CSCGDYW
Sbjct: 677 DNSRFHHFVKGGCSCGDYW 695



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 194/371 (52%), Gaps = 6/371 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L +C     LR G+ +HA ++ +       +L   LI  Y+ C  +  A ++FD M   N
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSWT ++S  +Q +   +AL  F  M R+   P +F  ++   + A       G Q+H 
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHC 143

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           + ++  F++ ++V S+L DMY+K+G + EA  VF+ +P++D V+ TA+I GYA+ G  E 
Sbjct: 144 VGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEA 203

Query: 244 AIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           A+  FR ++ EG++ ++     SVL+A  GL      + +HS V++      V ++N+L 
Sbjct: 204 AVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALT 263

Query: 303 DMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           DMY+K   +  + RV   +     V+S  +++ GY +     + + +F  +R +  V+P+
Sbjct: 264 DMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQG-VEPN 322

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
             T+ +++ GC+   + ++G  +  E++  K     +      ++DM G+ G +  +++ 
Sbjct: 323 EFTFSSMIKGCAMQALLEQGAQLHAEVI--KTSLISDSFVSSTLLDMYGKCGLISLSIQL 380

Query: 422 IKNMPFEPTAA 432
            K + +    A
Sbjct: 381 FKEIEYHTDIA 391



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 5/274 (1%)

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRI 210
           RS         A  L SC  A    LG+ +H+ L++     +  ++ + L+ MY+    +
Sbjct: 10  RSLDTATSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADV 69

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
             A  +F+ +P  ++VS T ++SG  Q  +  +A+  F  +   G++      +S   A 
Sbjct: 70  PSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAA 129

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           + LAA   G Q+H   +R    + + + ++L DMYSK G L  + RVFD M ++  ++W 
Sbjct: 130 AALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWT 189

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIV 389
           AM+ GY+K+G     V  F  MR E  V  D     +VLS  + GG++D  LA   H  V
Sbjct: 190 AMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLS--ASGGLKDGWLARAIHSCV 247

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
             K GFE E+     + DM  +A  +  A   +K
Sbjct: 248 -MKSGFEQEVAVRNALTDMYAKAADMDNAARVVK 280



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 1/177 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            IE+   G+E     + +++  C  Q  L  G ++HA +IKT      ++ + L+  Y K
Sbjct: 311 FIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGK 370

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +S + ++F E+     ++W A I+  +Q  H  EA+  F RM  S   PN  TF ++
Sbjct: 371 CGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSL 430

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           LT+C+ A   + G K  +S+      E      S ++DMY +AGR+ EA      +P
Sbjct: 431 LTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMP 487


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/599 (35%), Positives = 361/599 (60%), Gaps = 7/599 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N +  +  +E+   G++     +  LL+A V     + GQ+VH  ++KT +   V++   
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+ +Y+K + + +  K+F EM E + +S+  +I++Y+      E+ +LF ++  +  +  
Sbjct: 282 LLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 159 EFTFATVLTSCAGAFGFELGKQIH--SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           +F FAT+L+    +    +G+QIH  ++ + +NFES   V ++L+DMYAK     EA+ +
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR--VENALVDMYAKCNGDKEAQKI 399

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  +  V  TA+IS Y Q G  EE I +F  ++  G+ ++  T+AS+L A + LA++
Sbjct: 400 FDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASI 459

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+Q+HS ++R    S V   ++L+D Y+KCG +T + + F  M ER  +SWNA++  Y
Sbjct: 460 SLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAY 519

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           +++G     +  F  M +    KPDSV++L+VLS CSH G  +  L  F+ +    +   
Sbjct: 520 AQNGNVDGTLNSFQQMIQSG-YKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYE-VT 577

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P+ EHY  +VD+L R GR  EA + +  MPFEP+  +  S+L +CR+H N ++ +    R
Sbjct: 578 PKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADR 637

Query: 457 LMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           L  +E   +A  Y+ +SN+YA AG+W++V +V++ M+++ V K P  SW+E+    H F 
Sbjct: 638 LFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFS 697

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           A+D+SHP  +++  K+  LS + ++ GY PD +C L+DVDE  K + L  HSE+ A+ F 
Sbjct: 698 ANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFA 757

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ TP+G+PI V+KNLR C DCH   K +S++  R++ +RD +RFHH  +G CSCGDYW
Sbjct: 758 LMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 210/401 (52%), Gaps = 4/401 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E  +    TLL+      T     ++H H+IK  Y   + +   L+  Y K  
Sbjct: 130 DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL  A ++F  M  ++ V++ ++++ YS +  + EA+ LF+ +  S  +P++FTFA +L+
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +  G    + G+Q+H  ++K+NF  +++VG++LLD Y+K  ++ E   +F  +PE D +S
Sbjct: 250 AAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGIS 309

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I+ YA  G  +E+ +LFRKLQ          +A++L+  +    L  G+Q+H   +
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                    ++N+L+DMY+KC     ++++FDN++ ++ + W AM+  Y + G   E + 
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F+ MR    V  D  T+ ++L  C++      G  +   ++  + GF   +     ++D
Sbjct: 430 VFSDMRRTG-VPADQATFASILRACANLASISLGRQLHSLLI--RSGFMSNVYSGSALLD 486

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
              + G + +A++    MP E  +    +L+ A   + NVD
Sbjct: 487 TYAKCGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVD 526



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 180/359 (50%), Gaps = 6/359 (1%)

Query: 74  LRGGQRVHAHMI--KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           L  G  VHAH +  +   +  + L   +I  + K   LS AR++FD M ER  VSWT +I
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNM-MISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
             Y Q   S EA  L+  M R   EP+  T  T+L+         +  QIH+ +IK  +E
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            ++ V +SL+D Y K   ++ A  +F+ +  +D V+  ++++GY+  GL+EEAIELF +L
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
              G+  +  T+A++L+A  GL     G+QVH  VL+      V + N+L+D YSK   +
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
               ++F  M E   IS+N ++  Y+ +G  +E  +LF  + +  +       +  +LS 
Sbjct: 293 DEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKL-QFTRFDRRQFPFATLLSI 351

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            +       G  +  + +     FE  +E+   +VDM  +     EA +   N+  + T
Sbjct: 352 ATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACKST 408



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 34/277 (12%)

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------------------- 221
           I + I+K+ F  +    +  ++ + + G +  A  VF+ +P                   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 222 ------------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                       ER  VS T +I GY Q    +EA  L+  ++  G+  +YVT  ++L+ 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L       Q+H+HV++      +++ NSL+D Y K   L  + ++F +M  +  +++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ GYS  G+  E +ELF L    + +KP   T+ A+LS     G++D          
Sbjct: 210 NSLMTGYSNEGLNEEAIELF-LELHNSGIKPSDFTFAALLSAAV--GLDDTKFGQQVHGF 266

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             K  F   +     ++D   +  +V E  +    MP
Sbjct: 267 VLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMP 303



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 17/177 (9%)

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L     + +H+++          N  ++ + + G L ++ +VFD M  +  IS N M+ 
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           G+ K G   +  ELF+ M E       +V++  ++ G            ++ ++   + G
Sbjct: 83  GHLKFGKLSKARELFDGMVERT-----AVSWTILIGGYLQSNQSKEAFRLYADMR--RGG 135

Query: 395 FEPEIEHYGCVVDMLGRAGR------VGEALEFIKNMPFEPTAAILGSLLGA-CRVH 444
            EP+   Y  +V +L   G       + +    +  + +E    +  SL+ A C+ H
Sbjct: 136 IEPD---YVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 350/606 (57%), Gaps = 40/606 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD--ARKMFDEMRER 122
           L+ C+N   ++   ++H H+++       Y+ T+LI    K     D  AR++ + ++ R
Sbjct: 56  LDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFR 112

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N   WTA+I  Y+ +    EA+ ++  M + +  P  FTF+ +L +C       LG+Q H
Sbjct: 113 NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH 172

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           +   +      +YVG++++DMY K   I  AR VF+ +PERDV+S T +I+ YA++G  E
Sbjct: 173 AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNME 232

Query: 243 -------------------------------EAIELFRKLQVEGMISNYVTYASVLTALS 271
                                          EA+E F +++  G+ ++ VT A  ++A +
Sbjct: 233 CAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACA 292

Query: 272 GLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            L A  +  +      +  +    +VV+ ++LIDMYSKCG++  +  VF +M+ + V ++
Sbjct: 293 QLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTY 352

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           ++M++G + HG  +E + LF+ M  + ++KP++VT++  L  CSH G+ D+G  VF  + 
Sbjct: 353 SSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMY 412

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
               G +P  +HY C+VD+LGR GR+ EALE IK M  EP   + G+LLGACR+H N +I
Sbjct: 413 QTF-GVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEI 471

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW-IELD 508
            E   + L E+EP+  GNY++LSN+YASAG W  V RVR+L+KEK + K P  SW ++ +
Sbjct: 472 AEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKN 531

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F   + +HPM  ++  K+++L  +    GY PD+S V YDV +  K  +L+ H+E
Sbjct: 532 GQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTE 591

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLAL F L+ T   + I ++KNLR+C+DCH F +  S+V G+ + +RD  RFHH   G C
Sbjct: 592 KLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDC 651

Query: 629 SCGDYW 634
           SCGD+W
Sbjct: 652 SCGDFW 657



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 144/312 (46%), Gaps = 42/312 (13%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKT---CYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           +  LL AC   + L  G++ HA   +    C+   VY+   +I  Y KCE +  ARK+FD
Sbjct: 152 FSALLKACGTMKDLNLGRQFHAQTFRLRGFCF---VYVGNTMIDMYVKCESIDCARKVFD 208

Query: 118 EMRERNVVSWTAMISAY-------------------------------SQKAHSFEALNL 146
           EM ER+V+SWT +I+AY                               +Q A   EAL  
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMY 204
           F RM +S    +E T A  +++CA     +   +   +  KS +    H+ +GS+L+DMY
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTY 263
           +K G + EA  VF  +  ++V + +++I G A  G  +EA+ LF  +  +  I  N VT+
Sbjct: 329 SKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTF 388

Query: 264 ASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
              L A S    +  G+QV   + + F +         ++D+  + G L  +  +   MS
Sbjct: 389 VGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMS 448

Query: 323 -ERTVISWNAML 333
            E     W A+L
Sbjct: 449 VEPHGGVWGALL 460



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--YSRRVFDNM 321
           +S+++ L     L   KQ+H HVLR  +     +   LI   +K G     Y+RRV + +
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             R    W A++ GY+  G   E + ++  MR+E ++ P S T+ A+L  C  G M+D  
Sbjct: 110 QFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKE-EITPVSFTFSALLKAC--GTMKDLN 166

Query: 382 LA 383
           L 
Sbjct: 167 LG 168


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 343/600 (57%), Gaps = 6/600 (1%)

Query: 38  SNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SNG   KA+   + M   G E+      ++L AC     L  G+ VH + +KT +     
Sbjct: 274 SNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTS 333

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           L   L+  Y+ C       K+F  M ++NVVSWTAMI++Y++     +   LF  M    
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           T P+ F   + L + AG    + GK +H   I++  E  + V ++L++MY K G + EA+
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAK 453

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            +F+ +  +D++S   +I GY++  L  EA  LF ++ ++ +  N VT   +L A + L+
Sbjct: 454 LIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLS 512

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L  G+++H++ LR        + N+LIDMY KCG+L  +RR+FD +S + +ISW  M+ 
Sbjct: 513 SLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVA 572

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY  HG GR+ + LF  MR    + PD+ ++ A+L  CSH G+ D G   F + +  +  
Sbjct: 573 GYGMHGRGRDAIALFEQMRVSG-IAPDAASFSAILYACSHSGLRDEGWRFF-DAMRKEHK 630

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EP ++HY C+VD+L   G + EA EFI +MP EP ++I  SLL  CR+H NV + E V 
Sbjct: 631 IEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVA 690

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           +R+ E+EPEN G YV+L+N+YA A RWE V +++  +  + + ++ G SWIE    +H F
Sbjct: 691 ERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVF 750

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
            A +R+HP    ++  + +++ + +E G+ P     L   D     + L GHS KLA+ F
Sbjct: 751 IADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAF 810

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G++   EG  IRV KN R+C  CH  AKF+SK+  R++ LRD NRFHH  +G CSC  YW
Sbjct: 811 GVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 236/474 (49%), Gaps = 16/474 (3%)

Query: 24  PSFPPNPQ---NLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           P + P      +++ LC +G L +AL  + + G++ R   Y  +L  C   R+L GG+R 
Sbjct: 56  PDWVPTSDVNLHIQRLCRSGDLEEALGLLGSDGVDDR--SYGAVLQLCSEVRSLEGGKRA 113

Query: 81  HAHM-IKTCYRPPV--YLRTRLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQ 136
           H  +   +  R  +   L  +L++ Y KC  L +AR++FDEM +  +V  WTA++S Y++
Sbjct: 114 HFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAK 173

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E + LF +M      P+ +T + VL   AG    E G+ +H L+ K  F S   V
Sbjct: 174 AGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAV 233

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           G++L+  YAK+ R  +A  VF+ +P RDV+S  ++ISG    GL ++AIELF ++ +EG 
Sbjct: 234 GNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE 293

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             +  T  SVL A + L  L  G+ VH + ++    S   L N L+DMYS C     + +
Sbjct: 294 ELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNK 353

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +F NM ++ V+SW AM+  Y++ G+  +V  LF  M  E   +PD     + L   +   
Sbjct: 354 IFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG-TRPDIFAITSALHAFAGNE 412

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           +   G +V    +  ++G E  +     +++M  + G + EA      +  +   +    
Sbjct: 413 LLKHGKSVHGYAI--RNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTL 470

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           + G  R +   +      + L+++ P    N V ++ +  +A     + R RE+
Sbjct: 471 IGGYSRNNLANEAFSLFTEMLLQLRP----NAVTMTCILPAAASLSSLERGREM 520


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 336/569 (59%), Gaps = 37/569 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++V Y +   ++ AR +F+E+  +  V W AMIS Y Q     +A  LF RM+     
Sbjct: 236 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 295

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIK--SNF--ESHIYVGSSLLDMYAKAGRIHE 212
            +EFTF +VL++CA A  F  GK +H  II+   NF  E+ + V ++L+ +Y+K G+I  
Sbjct: 296 LDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVI 355

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG------MISNYV----- 261
           A+ +F+ +  +DVVS   I+SGY   G  ++A+E+F+ +  +       M+S YV     
Sbjct: 356 AKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLS 415

Query: 262 --------------------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
                               TYA  + A   L AL HG+Q+H+H+++    +     N+L
Sbjct: 416 EDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNAL 475

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + MY+KCG++  +R VF  M     +SWNAM+    +HG GRE +ELF+ M  E  + PD
Sbjct: 476 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEG-IDPD 534

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +++L +L+ C+H G+ D G   F E +    G  P  +HY  ++D+LGR+GR+GEA + 
Sbjct: 535 RISFLTILTACNHAGLVDEGFHYF-ESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 593

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           IK MPFEPT +I  ++L  CR + +++ G +   +L  + P++ G Y++LSN Y++AGRW
Sbjct: 594 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRW 653

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            D  RVR+LM+++ V K+PG SWIE+   +H F   D  HP  +E+   ++ +  + ++ 
Sbjct: 654 VDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 713

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+D++  +KE +L  HSEKLA+ FGL+  P GA + V+KNLRIC DCH   
Sbjct: 714 GYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAM 773

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
            F+SK  GR++ +RD  RFHH  +G CSC
Sbjct: 774 MFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK--TCYRPPVYL--RTRLIVFYNKCECLSDARKMF 116
           + ++L+AC N      G+ VH  +I+    + P   L     L+  Y+K   +  A+++F
Sbjct: 301 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 360

Query: 117 DEMRERNVVSWTA-------------------------------MISAYSQKAHSFEALN 145
           D M  ++VVSW                                 M+S Y     S +AL 
Sbjct: 361 DTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALK 420

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +M   D +P ++T+A  + +C      + G+Q+H+ +++  FE+    G++LL MYA
Sbjct: 421 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 480

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K G +++AR VF  +P  D VS  A+IS   Q G   EA+ELF ++  EG+  + +++ +
Sbjct: 481 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 540

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           +LTA +    +  G      + R F I         LID+  + G +  +R +   M  E
Sbjct: 541 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 600

Query: 324 RTVISWNAMLVGYSKHG 340
            T   W A+L G   +G
Sbjct: 601 PTPSIWEAILSGCRTNG 617



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 139/327 (42%), Gaps = 73/327 (22%)

Query: 55  EMRFEE-------YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +MR E+       Y   + AC     L+ G+++HAH+++  +         L+  Y KC 
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            ++DAR +F  M   + VSW AMISA  Q  H  EAL LF +M+    +P+  +F T+LT
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 168 SCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +C  A     GF   + +      S  E H    + L+D+  ++GRI EAR + + +P  
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHY---ARLIDLLGRSGRIGEARDLIKTMPFE 600

Query: 224 DVVSC-TAIISGYAQLGLDE----EAIELFRKL-QVEGMISNYVTYASVLTALSGLAALG 277
              S   AI+SG    G  E     A +LFR + Q +G                      
Sbjct: 601 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDG---------------------- 638

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV-----ISW--- 329
                          +Y++L N+    YS  G    + RV   M +R V      SW   
Sbjct: 639 ---------------TYILLSNT----YSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 679

Query: 330 ----NAMLVGYSKHGMGREVVELFNLM 352
               +  LVG +KH   +EV +   ++
Sbjct: 680 GSKIHVFLVGDTKHPEAQEVYQFLEVI 706



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 40/240 (16%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           +SL+   A AGR+ +A   F+ +P   RD V   A++S +A+  L   A+ +F  L   G
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 256 MI-SNYVTYASVLTALSGLAALG--HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
            +  +  ++ ++++A+  +  L   H  Q+H  VL+    + + + N+LI +Y KC +  
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 313 YS---RRVFDNMSERTVISWNAMLVGYSKH------------------------------ 339
            S   R+V D M ++  ++W  M+VGY +                               
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 340 -GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            GM  +  ELF  M  E KV  D  T+ +VLS C++ G    G +V  +I+  +  F PE
Sbjct: 276 SGMCADAFELFRRMVSE-KVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 334


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 353/607 (58%), Gaps = 39/607 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++  AC     L   +++H   I+  +   + L   LI  + KC+ ++ AR +FD+M  +
Sbjct: 82  SVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVK 141

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSWT+M   Y       + + LF  M  +    N  T +++L +CA     +LG+++H
Sbjct: 142 DVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYI--KLGREVH 199

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------------- 229
             I+++  E ++YV S+L++MYA +  + +AR VF+ +  RD+VS               
Sbjct: 200 GFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYE 259

Query: 230 ----------------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A ISG  Q G  E A+ +  K+Q  G+  N +T  S L
Sbjct: 260 RGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSAL 319

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              + L +L  GK++H +V R      V +  +L+ +Y+KCG L  SR VF+ M  + V+
Sbjct: 320 PGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVV 379

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +WN M++  S HG G E + LFN M +   V+P+SVT++ VLSGCSH  + D GL VF+ 
Sbjct: 380 AWNTMIMANSMHGKGGESLILFNKMLDSG-VEPNSVTFIGVLSGCSHSQLADEGLLVFNS 438

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           +   +    P+ +HY C+VD+L RAGR+ EA +FI+ MP EPTAA  G+LLGACRV+ NV
Sbjct: 439 M-SSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNV 497

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           ++G     +L EIEP+NAGNYV+LSN+  +A +W + + +R++M++K + K PGRSW+++
Sbjct: 498 ELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQV 557

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
              +++F   D+S+  ++ +   + ++  K +  GY P+   VL +VD+EQ+E+ L  HS
Sbjct: 558 KNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHS 617

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+LA+ FG++ +     +RV KNLRIC DCHN  K ++K+ G ++ +RD  RFHH  +G 
Sbjct: 618 ERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGY 677

Query: 628 CSCGDYW 634
           C+C D+W
Sbjct: 678 CTCNDFW 684



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 163/290 (56%), Gaps = 5/290 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A  +FD++ E ++ +WT +IS ++Q     +A++++  +L  +  P++F   +V  +
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA +    + K+IH   I+  F   + +G++L+DM+ K   ++ AR VF+ +  +DVVS 
Sbjct: 87  CAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSW 146

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T++   Y   G+  + I LFR++ + G+ +N +T +S+L A +    L  G++VH  +LR
Sbjct: 147 TSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGFILR 204

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E+   V + ++L++MY+    L  +R VFD+M  R ++SWN ML  Y  +      + L
Sbjct: 205 NEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGL 264

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           F+ MR+E  +K +  ++ A +SGC   G  +  L +  ++ D   G +P 
Sbjct: 265 FHQMRKEG-IKLNQASWNAAISGCMQNGQHELALGILCKMQD--SGIKPN 311



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 1/174 (0%)

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L+     +G +  A  +F+ +PE D+ + T +ISG+ Q G  ++AI+++  L    +  +
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
                SV  A +    L   K++H   ++F     +VL N+LIDM+ KC  +  +R VFD
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +M  + V+SW +M   Y   GM R+ + LF  M   N ++ +S+T  ++L  C+
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTVSSILPACA 189


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/637 (36%), Positives = 361/637 (56%), Gaps = 29/637 (4%)

Query: 11  FSSLTFTQQQL--------TVPSFPPNPQNLKTL----CSNGQLTKALIEMATLGLEMRF 58
            S L+  +Q L        ++P FPP+  +  +L      +G L  A I +     E   
Sbjct: 86  ISGLSLRRQTLPDAAAALASIP-FPPSVVSFTSLLRGYVRHGLLADA-IRLFQQMPERNH 143

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
             Y  LL   ++   +   +R+   M        V   T ++  Y +   +++AR +FDE
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M +RNVVSWTAMIS Y+Q       +NL  ++     E NE ++  +L     A   E  
Sbjct: 200 MPKRNVVSWTAMISGYAQNGE----VNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            ++ + +     E  +   ++++  + + G +  A+ VFE + ERD  + +A+I  Y Q 
Sbjct: 256 AELFNAMP----EHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQN 311

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
               EA+  FR++   G+  NY +  S+LT  + LA L +G++VH+ +LR      V   
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV 371

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           ++LI MY KCG+L  ++RVF     + ++ WN+M+ GY++HG+G + + +F+ MR    +
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAG-M 430

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD +TY+  L+ CS+ G    G  +F+ +        P  EHY C+VD+LGR+G V EA
Sbjct: 431 SPDGITYIGALTACSYTGKVKEGREIFNSMT-VNSSIRPGAEHYSCMVDLLGRSGLVEEA 489

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + IKNMP EP A I G+L+GACR+H N +I E   ++L+E+EP NAG YV+LS++Y S 
Sbjct: 490 FDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSV 549

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD-RSHPMREELSAKVKQLSVK 537
           GRWED +++R+ +  + + K PG SWIE D+ +H F + D  +HP    +   +++L   
Sbjct: 550 GRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGL 609

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             E+GY  D S VL+D+DEEQK   L  HSE+ A+ +GL+  PEG PIRV+KNLR+C DC
Sbjct: 610 LMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDC 669

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K ++K+  R++ LRD NRFHH  +G CSC DYW
Sbjct: 670 HSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 77/315 (24%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM----------------LR 152
           +  AR  F+ M  R   S+ A+++ Y +      AL LF RM                LR
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 153 SDTEPNEFTFATVLTSCAGAFGFE---LGKQIHSLIIKS----------NFESHIYVGSS 199
             T P+       +        F     G   H L+  +          N  S+  +   
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LLD    AGR++EAR +F+ +P+RDVV+ TA++SGY Q G   EA  LF ++    ++S 
Sbjct: 153 LLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS- 207

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
                                                   ++I  Y++ G +  +R++F+
Sbjct: 208 --------------------------------------WTAMISGYAQNGEVNLARKLFE 229

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M ER  +SW AMLVGY + G   +  ELFN M E      +     A++ G    GM D
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN-----AMMVGFGQRGMVD 284

Query: 380 RGLAVFHEIVDCKDG 394
               VF ++ +  DG
Sbjct: 285 AAKTVFEKMRERDDG 299



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 118/270 (43%), Gaps = 56/270 (20%)

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           A+AG I  AR  FE +P R   S  A+++GY +  L + A+ LFR++    + S    Y 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS----YN 83

Query: 265 SVLTALS--------GLAALG--------------------HGKQVHSHVLRFEIP---- 292
           ++++ LS          AAL                     HG    +  L  ++P    
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 293 -SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            SY VL   L+D     G +  +RR+FD M +R V++W AML GY + G   E   LF+ 
Sbjct: 144 VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG- 410
           M + N      V++ A++SG +  G  +    +F  +        PE         ++G 
Sbjct: 200 MPKRN-----VVSWTAMISGYAQNGEVNLARKLFEVM--------PERNEVSWTAMLVGY 246

Query: 411 -RAGRVGEALEFIKNMPFEPTAAILGSLLG 439
            +AG V +A E    MP  P AA    ++G
Sbjct: 247 IQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 104/282 (36%), Gaps = 55/282 (19%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-- 356
           N+ I   ++ G++  +R  F+ M  RT  S+NA+L GY ++ +    + LF  M   +  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 357 --------------------------KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
                                        P  V++ ++L G    G+    + +F ++  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 391 CKDGFEPEIEH--YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                 PE  H  Y  ++  L  AGRV EA      MP     A    L G C+      
Sbjct: 139 ------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA----- 187

Query: 449 IGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            G     R +  E+   N  ++  + + YA  G      ++ E+M E+        SW  
Sbjct: 188 -GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-----SWTA 241

Query: 507 L----DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           +     Q  H   A++  + M E   A    + V F + G V
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 342/574 (59%), Gaps = 7/574 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC      R G+ VH ++IKT +   V +   LI  ++   C  +A  +F +M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSWTAMIS Y +     +A+  +  M      P+E T A+VL++CAG    + G  +H
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLH 420

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
               ++   S++ V +SL+DMY+K   I +A  VF  +P ++V+S T+II G        
Sbjct: 421 EFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSF 480

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  F+++ +  +  N VT  SVL+A + + AL  GK++H+H LR  +     L N+L+
Sbjct: 481 EALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALL 539

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY +CG +  +   F N  E+ V SWN +L GY++ G G   VELF+ M E + V PD 
Sbjct: 540 DMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESD-VNPDE 597

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+ ++L  CS  GM   GL  F E ++ K    P ++HY  VVD+LGRAGR+ +A EFI
Sbjct: 598 ITFTSLLCACSRSGMVTDGLEYF-ESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFI 656

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           K MP +P  AI G+LL ACR++ NV++GE   Q + E++ ++ G Y++L NLYA +G+W+
Sbjct: 657 KKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWD 716

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V RVR++M+E  +T DPG SW+E+   +H F   D  HP  +E++A ++    K +  G
Sbjct: 717 EVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATG 776

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
                     D+D  + E +  GHSE+LA+ FGLI T  G PI V KNL +C +CHN  K
Sbjct: 777 LSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVK 835

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGD--YW 634
           F+SKV  R +S+RD  +FHH  +G CSCGD  YW
Sbjct: 836 FISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 238/456 (52%), Gaps = 11/456 (2%)

Query: 29  NPQNL-KTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84
           NP +L   LC  G L KALI    M  L + +  E Y  LL  C  +R    G RVH+++
Sbjct: 61  NPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV 120

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
            KT  R  V L   L+  + +   L +A  +F +M ER++ SW  ++  Y++  +  EAL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           NL+ RML     P+ +TF  VL +C G      G+++H  +I+  FES + V ++L+ MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G I  AR VF+ +P RD +S  A+ISGY +  +  E + LF  ++   +  + +T  
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           SV++A   L     G++VH +V++    + V + NSLI M+S  G    +  VF  M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            ++SW AM+ GY K+G+  + VE + +M  E  V PD +T  +VLS C+  G+ D+G+ +
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEG-VVPDEITIASVLSACAGLGLLDKGI-M 418

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            HE  D + G    +     ++DM  +   + +ALE    +P +   +    +LG    +
Sbjct: 419 LHEFAD-RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            + +   F  Q ++ ++P    N V L ++ ++  R
Sbjct: 478 RSFEALFFFQQMILSLKP----NSVTLVSVLSACAR 509



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 231/487 (47%), Gaps = 40/487 (8%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +G+      +  +L  C     L  G+ VH H+I+  +   V +   LI  Y KC  
Sbjct: 186 MLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGD 245

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  AR +FD M  R+ +SW AMIS Y +     E L LF  M     +P+  T  +V+++
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C       LG+++H  +IK+ F + + V +SL+ M++  G   EA  VF  +  +D+VS 
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA+ISGY + GL E+A+E +  ++ EG++ + +T ASVL+A +GL  L  G  +H    R
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + SYV++ NSLIDMYSKC  +  +  VF  +  + VISW ++++G   +    E +  
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK---DGFEP-------- 397
           F  M     +KP+SVT ++VLS C+  G    G  +    +      DGF P        
Sbjct: 486 FQQMIL--SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543

Query: 398 -----------------EIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSL 437
                            ++  +  ++    + G+ G A+E    M      P      SL
Sbjct: 544 RCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSL 603

Query: 438 LGAC-RVHYNVDIGEFVG--QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           L AC R     D  E+    +    I P N  +Y  + +L   AGR ED     E +K+ 
Sbjct: 604 LCACSRSGMVTDGLEYFESMEHKFHIAP-NLKHYASVVDLLGRAGRLEDAY---EFIKKM 659

Query: 495 AVTKDPG 501
            +  DP 
Sbjct: 660 PIDPDPA 666


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 328/573 (57%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++V Y +   +  AR +F+E+  +  V W AMIS Y     + EA  LF RM+     
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVP 291

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIK--SNF--ESHIYVGSSLLDMYAKAGRIHE 212
            +EFTF +VL++CA    F  GK +H  II+   NF  E+ + V ++L+  Y+K G I  
Sbjct: 292 LDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAV 351

Query: 213 ARGVFECLPERDVVSCTAIISGYAQL-------------------------------GLD 241
           AR +F+ +  +DVVS   I+SGY +                                G  
Sbjct: 352 ARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFA 411

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           E+A++LF K++ E +     TYA  + A   L AL HGKQ+H H+++          N+L
Sbjct: 412 EDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNAL 471

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MY++CG++  +  +F  M     +SWNAM+    +HG GRE +ELF+ M  E  + PD
Sbjct: 472 ITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG-IYPD 530

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +++L VL+ C+H G+ D G   F E +    G  P  +HY  ++D+LGRAGR+GEA + 
Sbjct: 531 RISFLTVLTACNHSGLVDEGFRYF-ESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDL 589

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           IK MPFEPT +I  ++L  CR   ++++G     +L ++ P++ G Y++LSN Y++AG W
Sbjct: 590 IKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCW 649

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            D  RVR+LM+++ V K+PG SWIE    +H F   D  HP   E+   ++ +  K ++ 
Sbjct: 650 VDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKL 709

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+D++  QKE +L  HSE+LA+ FGL+  P GA + V+KNLRIC DCH   
Sbjct: 710 GYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAI 769

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            F+SK  GR++ +RD  RFHH  +G CSCG+YW
Sbjct: 770 MFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 181/415 (43%), Gaps = 81/415 (19%)

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALN 145
           C  P     T L+  Y   + L  A   FD +    R+ V   A+ISAY++ +H+  A+ 
Sbjct: 83  CADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVA 142

Query: 146 LFIRMLRSDT-EPNEFTFATVLTSCAGAF---GFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +F  +L S +  P++++F T L S  G           Q+H  ++KS     + V ++L+
Sbjct: 143 VFRSLLASGSLRPDDYSF-TALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALV 201

Query: 202 DMYAKA----------------------------------GRIHEARGVFECLPERDVVS 227
            +Y K                                   G +  AR VFE +  +  V 
Sbjct: 202 ALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVV 261

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISGY   G+  EA ELFR++ +E +  +  T+ SVL+A + +    HGK VH  ++
Sbjct: 262 WNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQII 321

Query: 288 RFEIPSYV-----VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH--- 339
           R + P++V      + N+L+  YSKCG++  +RR+FDNM+ + V+SWN +L GY +    
Sbjct: 322 RLQ-PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCL 380

Query: 340 ----------------------------GMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
                                       G   + ++LFN MR EN VKP   TY   ++ 
Sbjct: 381 DKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSEN-VKPCDYTYAGAIAA 439

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           C   G    G  +   IV    GFE        ++ M  R G V EA      MP
Sbjct: 440 CGELGALKHGKQLHGHIVQL--GFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 37/317 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIK--TCYRPPVYL--RTRLIVFYNKC---------- 106
           + ++L+AC N      G+ VH  +I+    + P   L     L+ FY+KC          
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 107 ---------------------ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145
                                 CL  A ++F+EM  +N +SW  M+S Y     + +AL 
Sbjct: 357 DNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALK 416

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +M   + +P ++T+A  + +C      + GKQ+H  I++  FE     G++L+ MYA
Sbjct: 417 LFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYA 476

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G + EA  +F  +P  D VS  A+IS   Q G   EA+ELF ++  EG+  + +++ +
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           VLTA +    +  G +    + R F I         LID+  + G +  +R +   M  E
Sbjct: 537 VLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE 596

Query: 324 RTVISWNAMLVGYSKHG 340
            T   W A+L G    G
Sbjct: 597 PTPSIWEAILSGCRTSG 613


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 347/610 (56%), Gaps = 43/610 (7%)

Query: 33  LKTLCSNGQLTKALIEMATL-GLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +++  +NG   + +    T+ G  +R + Y    +L AC    T+  G+++H    K   
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   L+  Y KC  LS+AR + DEM  R+VVSW +++  Y+Q     +AL +   
Sbjct: 172 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       +  T A++L +                +  +  E+ +YV     DM+ K G+
Sbjct: 232 MESVKISHDAGTMASLLPA----------------VSNTTTENVMYVK----DMFFKMGK 271

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                        + +VS   +I  Y +  +  EA+EL+ +++ +G   + V+  SVL A
Sbjct: 272 -------------KSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA 318

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
               +AL  GK++H ++ R ++   ++L+N+LIDMY+KCG L  +R VF+NM  R V+SW
Sbjct: 319 CGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSW 378

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            AM+  Y   G G + V LF+ +++   V PDS+ ++  L+ CSH G+ + G + F  + 
Sbjct: 379 TAMISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           D      P +EH  C+VD+LGRAG+V EA  FI++M  EP   + G+LLGACRVH + DI
Sbjct: 438 D-HYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G     +L ++ PE +G YV+LSN+YA AGRWE+VT +R +MK K + K+PG S +E+++
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
           I+HTF   DRSHP  +E+  ++  L  K KE GYVPD    L+DV+EE KE  L  HSEK
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 570 LALTFGLIGTPE-----GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
           LA+ F L+ T E        IR+ KNLRIC DCH  AK +S++  R++ +RD NRFH   
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 625 EGTCSCGDYW 634
            G CSCGDYW
Sbjct: 677 FGVCSCGDYW 686



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 176/362 (48%), Gaps = 39/362 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+   + RTLR    VH+ +I    R    L  +L+  Y   + ++ ARK+FDE+ ERN
Sbjct: 48  VLDTYPDIRTLR---TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN 104

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+    MI +Y       E + +F  M   +  P+ +TF  VL +C+ +    +G++IH 
Sbjct: 105 VIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHG 164

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
              K    S ++VG+ L+ MY K G + EAR V + +  RDVVS  +++ GYAQ    ++
Sbjct: 165 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E+ R+++   +  +  T AS+L A+S                                
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSN------------------------------- 253

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
             +   ++ Y + +F  M +++++SWN M+  Y K+ M  E VEL++ M E +  +PD+V
Sbjct: 254 --TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM-EADGFEPDAV 310

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           +  +VL  C        G  + H  ++ K    P +     ++DM  + G + +A +  +
Sbjct: 311 SITSVLPACGDTSALSLGKKI-HGYIERKK-LIPNLLLENALIDMYAKCGCLEKARDVFE 368

Query: 424 NM 425
           NM
Sbjct: 369 NM 370


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 356/608 (58%), Gaps = 41/608 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMI--KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +LLN+C    TL+  +++HA ++       P  + +    +  +    L  A K+ +   
Sbjct: 14  SLLNSCT---TLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNN 70

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE---PNEFTFATVLTSCAGAFGFEL 177
              + +  +MI AYS+ +   ++ + +  +L S+     P+ +TF  ++ +CA       
Sbjct: 71  NPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT 130

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYA-------------------------------K 206
           G  +H  +IK  FE   +V + L+ MYA                               K
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G I  AR +F+ +PERD V+  A+I+GYAQ G   EA+++F  +Q+EG+  N V+   V
Sbjct: 191 CGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLV 250

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L+A + L  L HG+ VH++V R+++   V L  +L+DMY+KCG++  + +VF  M ER V
Sbjct: 251 LSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNV 310

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
            +W++ + G + +G G E ++LFN M+ E  V+P+ +T+++VL GCS  G+ + G   F 
Sbjct: 311 YTWSSAIGGLAMNGFGEESLDLFNDMKREG-VQPNGITFISVLKGCSVVGLVEEGRKHFD 369

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            + +   G  P++EHYG +VDM GRAGR+ EAL FI +MP  P      +LL ACR++ N
Sbjct: 370 SMRNVY-GIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKN 428

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            ++GE   ++++E+E +N G YV+LSN+YA    WE V+ +R+ MK K V K PG S IE
Sbjct: 429 KELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIE 488

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
           +D  +H F   D+SHP  +E+  K++++S   + +GYV + + VL+D++EE+KE  L  H
Sbjct: 489 VDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKH 548

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SEK+A+ FGLI      PIRV+ NLRIC DCHN AK +SK++ R++ +RD+NRFHH  +G
Sbjct: 549 SEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDG 608

Query: 627 TCSCGDYW 634
            CSC DYW
Sbjct: 609 ECSCKDYW 616


>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
 gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
          Length = 631

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/583 (39%), Positives = 341/583 (58%), Gaps = 8/583 (1%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           R   + +LL  C   R+L  G+R+HA ++ T     ++L   LI  Y KC  + DAR +F
Sbjct: 52  RVAAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVF 111

Query: 117 DEMRERN-VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           +++   N VVSWTAMIS ++       AL+ F +M+     PNE TF ++L +CA A   
Sbjct: 112 EKIESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDV 171

Query: 176 ELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           + G  IH L+  S F  S++ VG++L+DMY K GR   A  VFE +  RD+V   A+I+ 
Sbjct: 172 KHGTAIHELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDLVVWNAMITV 231

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            +Q GLDE+A+ LFR + +EG   + VT  + L A S L +L  GK++H  +L   + S 
Sbjct: 232 CSQQGLDEQALRLFRVMDLEGHTPDEVTLVAALEACSNLNSLAAGKKLHELILDAGLDSS 291

Query: 295 V--VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           +  VL  +L++MY + G L  + RVF+ M+   +++W A++  +++HG     ++L   M
Sbjct: 292 IKMVLATALVNMYGRYGQLEDALRVFEKMNHWNLVAWTALIAAFAQHG-DVHAIDLSWRM 350

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
             E  V+ D + +L+VL  CSH G+ + GL+ F  +V    G      HY C+VD+L R 
Sbjct: 351 HLEG-VQADDIVFLSVLHACSHAGVLEAGLSCFQGMV-ADFGVRGGAAHYSCMVDLLARC 408

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GRV EA E + +MPFEP    + +LL ACRV  +   G  V +    + P +A  YV++S
Sbjct: 409 GRVAEAEELLHSMPFEPAHMEMKTLLAACRVSGDTPRGARVARLASGLIPLDAAPYVLMS 468

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS-HPMREELSAKV 531
           + YA+A +W++V  VRE M +  V K  G S +E+   +H F A + S H    E+  ++
Sbjct: 469 HAYAAAEKWDEVAEVRERMAKLGVKKPRGWSCVEVKNRVHQFFAGNFSWHSEAAEIEVEL 528

Query: 532 KQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
           ++L    KEAGYVPD   + + V E+ KE +L  HSE++A+ FGL+  P G PI V+KNL
Sbjct: 529 RRLQAVVKEAGYVPDTGQIGHCVQEDDKEDLLALHSERVAIAFGLLRVPAGLPIHVVKNL 588

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+C DCH  AK +S+  GR++ +RD  RFH    GTCSCGDYW
Sbjct: 589 RVCSDCHAVAKIISRSVGRRIVVRDAYRFHRFENGTCSCGDYW 631



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 40/273 (14%)

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           S    +AS+L       +L  G+++H+ ++   +   + L N LI MY KCG++  +R V
Sbjct: 51  SRVAAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAV 110

Query: 318 FDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           F+ + S  +V+SW AM+ G++ HG     ++ F  M  E  V+P+ VT++++L  C+   
Sbjct: 111 FEKIESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEG-VRPNEVTFVSILGACAAAR 169

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV--------------------- 415
               G A+ HE+V+  +     +     ++DM G+ GR                      
Sbjct: 170 DVKHGTAI-HELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDLVVWNAM 228

Query: 416 ----------GEALEFIKNMPFE---PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
                      +AL   + M  E   P    L + L AC    ++  G+ + + +++   
Sbjct: 229 ITVCSQQGLDEQALRLFRVMDLEGHTPDEVTLVAALEACSNLNSLAAGKKLHELILDAGL 288

Query: 463 ENAGNYVI---LSNLYASAGRWEDVTRVRELMK 492
           +++   V+   L N+Y   G+ ED  RV E M 
Sbjct: 289 DSSIKMVLATALVNMYGRYGQLEDALRVFEKMN 321


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/599 (35%), Positives = 361/599 (60%), Gaps = 7/599 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           N +  +  +E+   G++     +  LL+A V     + GQ+VH  ++KT +   V++   
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+ +Y+K + + +  K+F EM E + +S+  +I++Y+      E+ +LF ++  +  +  
Sbjct: 282 LLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 159 EFTFATVLTSCAGAFGFELGKQIH--SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           +F FAT+L+    +    +G+QIH  ++ + +NFES   V ++L+DMYAK     EA+ +
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR--VENALVDMYAKCNGDKEAQKI 399

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +  +  V  TA+IS Y Q G  EE I +F  ++  G+ ++  T+AS+L A + LA++
Sbjct: 400 FDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASI 459

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+Q+HS ++R    S V   ++L+D Y+KCG +T + + F  M ER  +SWNA++  Y
Sbjct: 460 SLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAY 519

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           +++G     +  F  M +    KPDSV++L+VLS CSH G  +  L  F+ +    +   
Sbjct: 520 AQNGNVDGTLNSFQQMIQSG-YKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYE-VT 577

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P+ EHY  +VD+L R GR  EA + +  MPFEP+  +  S+L +CR+H N ++ +    R
Sbjct: 578 PKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADR 637

Query: 457 LMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           L  +E   +A  Y+ +SN+YA AG+W++V +V++ M+++ V K P  SW+E+    H F 
Sbjct: 638 LFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFS 697

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           A+D+SHP  +++  K+  LS + ++ GY PD +C L+DVDE  K + L  HSE+ A+ F 
Sbjct: 698 ANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFA 757

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ TP+G+PI V+KNLR C DCH   K +S++  R++ +RD +RFHH  +G CSCGDYW
Sbjct: 758 LMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 210/401 (52%), Gaps = 4/401 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+E  +    TLL+      T     ++H H+IK  Y   + +   L+  Y K  
Sbjct: 130 DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL  A ++F  M  ++ V++ ++++ YS +  + EA+ LF+ +  S  +P++FTFA +L+
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +  G    + G+Q+H  ++K+NF  +++VG++LLD Y+K  ++ E   +F  +PE D +S
Sbjct: 250 AAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGIS 309

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I+ YA  G  +E+ +LFRKLQ          +A++L+  +    L  G+Q+H   +
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                    ++N+L+DMY+KC     ++++FDN++ ++ + W AM+  Y + G   E + 
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F+ MR    V  D  T+ ++L  C++      G  +   ++  + GF   +     ++D
Sbjct: 430 VFSDMRRTG-VPADQATFASILRACANLASISLGRQLHSLLI--RSGFMSNVYSGSALLD 486

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
              + G + +A++    MP E  +    +L+ A   + NVD
Sbjct: 487 TYAKCGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVD 526



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 180/359 (50%), Gaps = 6/359 (1%)

Query: 74  LRGGQRVHAHMI--KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           L  G  VHAH +  +   +  + L   +I  + K   LS AR++FD M ER  VSWT +I
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNM-MISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
             Y Q   S EA  L+  M R   EP+  T  T+L+         +  QIH+ +IK  +E
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            ++ V +SL+D Y K   ++ A  +F+ +  +D V+  ++++GY+  GL+EEAIELF +L
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
              G+  +  T+A++L+A  GL     G+QVH  VL+      V + N+L+D YSK   +
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
               ++F  M E   IS+N ++  Y+ +G  +E  +LF  + +  +       +  +LS 
Sbjct: 293 DEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKL-QFTRFDRRQFPFATLLSI 351

Query: 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            +       G  +  + +     FE  +E+   +VDM  +     EA +   N+  + T
Sbjct: 352 ATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACKST 408



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 34/277 (12%)

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------------------- 221
           I + I+K+ F  +    +  ++ + + G +  A  VF+ +P                   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 222 ------------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                       ER  VS T +I GY Q    +EA  L+  ++  G+  +YVT  ++L+ 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L       Q+H+HV++      +++ NSL+D Y K   L  + ++F +M  +  +++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ GYS  G+  E +ELF L    + +KP   T+ A+LS     G++D          
Sbjct: 210 NSLMTGYSNEGLNEEAIELF-LELHNSGIKPSDFTFAALLSAAV--GLDDTKFGQQVHGF 266

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             K  F   +     ++D   +  +V E  +    MP
Sbjct: 267 VLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMP 303



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 17/177 (9%)

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           +L     + +H+++          N  ++ + + G L ++ +VFD M  +  IS N M+ 
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           G+ K G   +  ELF+ M E       +V++  ++ G            ++ ++   + G
Sbjct: 83  GHLKFGKLSKARELFDGMVERT-----AVSWTILIGGYLQSNQSKEAFRLYADMR--RGG 135

Query: 395 FEPEIEHYGCVVDMLGRAGR------VGEALEFIKNMPFEPTAAILGSLLGA-CRVH 444
            EP+   Y  +V +L   G       + +    +  + +E    +  SL+ A C+ H
Sbjct: 136 IEPD---YVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/439 (46%), Positives = 295/439 (67%), Gaps = 2/439 (0%)

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V ++L+DMYAK G    A  VFE + ++DV+S T++++G    G  EEA+ LF ++++ G
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  + +  A+VL+A + L  L  GKQVH++ L+  + S + + NSL+ MY+KCG +  + 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VFD+M  + VI+W A++VGY+++G GRE +  +N M     VKPD +T++ +L  CSH 
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASG-VKPDFITFIGLLFACSHA 182

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+ + G + F  + +   G +P  EHY C++D+LGR+G++ EA E +  M  +P A +  
Sbjct: 183 GLVEHGRSYFQSMEEVY-GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 241

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LL ACRVH NV++GE     L E+EP+NA  YV+LSNLY++AG+WE+  + R LMK + 
Sbjct: 242 ALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRG 301

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           V+K+PG SWIE+   +H F + DRSHP   E+ +KV ++ +  KEAGYVPDM+  L+D+D
Sbjct: 302 VSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMD 361

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE KE  L  HSEKLA+ FGL+  P GAPIR+ KNLRIC DCH   K+VS V+ R V LR
Sbjct: 362 EEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILR 421

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D N FHH  EG CSC DYW
Sbjct: 422 DSNCFHHFREGACSCSDYW 440



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 2/248 (0%)

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           +   L+  Y K      A  +F++M +++V+SWT++++         EAL LF  M    
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P++   A VL++CA     E GKQ+H+  +KS   S + V +SL+ MYAK G I +A 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +  +DV++ TA+I GYAQ G   E++  +  +   G+  +++T+  +L A S   
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 275 ALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAM 332
            + HG+     +   + I         +ID+  + G L  ++ + + M+ +     W A+
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 333 LVGYSKHG 340
           L     HG
Sbjct: 244 LAACRVHG 251



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL    EM  +G+         +L+AC     L  G++VHA+ +K+     + +
Sbjct: 46  NGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSV 105

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC C+ DA K+FD M  ++V++WTA+I  Y+Q     E+LN +  M+ S  
Sbjct: 106 DNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGV 165

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLI-----IKSNFESHIYVGSSLLDMYAKAGRI 210
           +P+  TF  +L +C+ A   E G+     +     IK   E +    + ++D+  ++G++
Sbjct: 166 KPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHY----ACMIDLLGRSGKL 221

Query: 211 HEAR 214
            EA+
Sbjct: 222 MEAK 225



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 38/238 (15%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           ++ N+L+DMY+K G   Y+  VF+ M+++ VISW +++ G   +G   E + LF  MR  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY--------GCVVD 407
             + PD +   AVLS C+   + + G  V    +    G    +++         GC+ D
Sbjct: 63  G-IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 408 -------------------MLGRA--GRVGEALEFIKNM---PFEPTAAILGSLLGACRV 443
                              ++G A  GR  E+L F  BM     +P       LL AC  
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 444 HYNVDIGEFVGQRLMEIEPENAG--NYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
              V+ G    Q + E+     G  +Y  + +L   +G+   +   +EL+ + AV  D
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGK---LMEAKELLNQMAVQPD 236


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/533 (40%), Positives = 326/533 (61%), Gaps = 9/533 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR---SDTEPNEFTFATV 165
           L  AR++FD M +R+  +W+A++S Y++      AL L+ RM     +D   NEFT ++ 
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFES---HIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
           L + A A     G+++H  +++   ++      + S+L DMYAK GR+ +AR VF+ +P 
Sbjct: 171 LAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPV 230

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           RD VS TA++  Y   G   E   LF   L+  G+  N  TYA VL A +  A    G+Q
Sbjct: 231 RDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQ 290

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           VH  + +         +++L+ MYSKCG +  + RVF+ M++  ++SW A++ GY+++G 
Sbjct: 291 VHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQ 350

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             E +  F++      +KPD VT++ VLS C+H G+ D+GL +FH I + +   E   +H
Sbjct: 351 PEEALRYFDMFLRSG-IKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKE-QYCIEHTADH 408

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           Y CV+D+L R+G+   A + I NM  +P   +  SLLG CR+H NV +     + L EIE
Sbjct: 409 YACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIE 468

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PEN   YV L+N+YAS G +++V  VR +M+ K +TK P  SWIE+ + +H F   D+SH
Sbjct: 469 PENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSH 528

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P  +E+ A +K+L VK  E GYV D+  VL+DV++EQKE+ +  HSE+LA+ FG+I TPE
Sbjct: 529 PKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPE 588

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G+PI+V KNLRIC DCH   K +S++  R + +RD NRFHH  +G CSC DYW
Sbjct: 589 GSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 72  RTLRGGQRVHAHMIKTCYRPP---VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
           R  R G+ +H H+++           L + L   Y KC  + DAR++FD M  R+ VSWT
Sbjct: 178 RCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWT 237

Query: 129 AMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           AM+  Y       E   LF+ MLR+    PNEFT+A VL +CA       G+Q+H  + K
Sbjct: 238 AMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAK 297

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           S      +  S+LL MY+K G +  A  VFE + + D+VS TA+ISGYAQ G  EEA+  
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYS 306
           F      G+  ++VT+  VL+A +    +  G ++ HS   ++ I         +ID+ S
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLS 417

Query: 307 KCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH---GMGREVVELFNLMREEN 356
           + G    + ++  NM+ +     W ++L G   H   G+ R   E    +  EN
Sbjct: 418 RSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPEN 471



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  +L AC        G++VH  M K+      +  + L+  Y+KC  +  A ++F+ M 
Sbjct: 272 YAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMA 331

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + ++VSWTA+IS Y+Q     EAL  F   LRS  +P+  TF  VL++CA A   + G +
Sbjct: 332 KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLE 391

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG----Y 235
           I HS+  +   E      + ++D+ +++G+   A  +   +  +      A + G    +
Sbjct: 392 IFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIH 451

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
             +GL   A E   +++ E   + YVT A++  ++
Sbjct: 452 KNVGLARRAAEALFEIEPENP-ATYVTLANIYASV 485


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 350/586 (59%), Gaps = 22/586 (3%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C N  TL+   +VHA M+ T      Y  + L+   +K    + A  +F+ +    +
Sbjct: 12  LQKCHNLNTLK---QVHAQMLTTGLSFQTYYLSHLLNTSSKFAS-TYAFTIFNHIPNPTL 67

Query: 125 VSWTAMISAYSQKAHSFE-ALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIH 182
             +  +IS+ +  +     A +L+  +L   T +PN FTF ++  +CA     + G  +H
Sbjct: 68  FLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLH 127

Query: 183 SLIIKSNFESH-IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG-- 239
           + ++K     +  +V +SLL+ YAK G++  +R +F+ + E D+ +   +++ YAQ    
Sbjct: 128 AHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASH 187

Query: 240 -----------LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
                      +  EA+ LF  +Q+  +  N VT  ++++A S L AL  G   H +VLR
Sbjct: 188 VSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLR 247

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +     +  +L+DMYSKCG L  + ++FD +S+R    +NAM+ G++ HG G + +EL
Sbjct: 248 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALEL 307

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           +  M+ E+ V PD  T +  +  CSHGG+ + GL +F E +    G EP++EHYGC++D+
Sbjct: 308 YRNMKLEDLV-PDGATIVVTMFACSHGGLVEEGLEIF-ESMKGVHGMEPKLEHYGCLIDL 365

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGRAGR+ EA E +++MP +P A +  SLLGA ++H N+++GE   + L+E+EPE +GNY
Sbjct: 366 LGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNY 425

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YAS GRW DV RVR LMK+  V K PG S +E++  +H F   D++HP  +E+ 
Sbjct: 426 VLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIY 485

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           +K+ +++ +  E G+ P  S VL+DV+EE KE  L  HSE+LA+ F LI +    PIR+I
Sbjct: 486 SKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRII 545

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S  Y R + +RD+NRFHH  +G+CSC DYW
Sbjct: 546 KNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 150/303 (49%), Gaps = 30/303 (9%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPV--YLRTRLIVFYNKCECLSDARKMFDE 118
           + +L  AC +   L+ G  +HAH++K   +PP   +++  L+ FY K   L  +R +FD+
Sbjct: 107 FPSLFKACASHPWLQHGPPLHAHVLKFL-QPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQ 165

Query: 119 MRERNVVSWTAMISAYSQKAH-------------SFEALNLFIRMLRSDTEPNEFTFATV 165
           + E ++ +W  M++AY+Q A              S EAL+LF  M  S  +PNE T   +
Sbjct: 166 ISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVAL 225

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           +++C+       G   H  ++++N + + +VG++L+DMY+K G ++ A  +F+ L +RD 
Sbjct: 226 ISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDT 285

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS-------GLAALGH 278
               A+I G+A  G   +A+EL+R +++E ++ +  T    + A S       GL     
Sbjct: 286 FCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFES 345

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYS 337
            K VH    + E          LID+  + G L  +     +M  +   I W ++L    
Sbjct: 346 MKGVHGMEPKLE------HYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAK 399

Query: 338 KHG 340
            HG
Sbjct: 400 LHG 402



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 10/213 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            L++AC N   L  G   H ++++   +   ++ T L+  Y+KC CL+ A ++FDE+ +R
Sbjct: 224 ALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDR 283

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           +   + AMI  ++   H  +AL L+  M   D  P+  T    + +C+     E G +I 
Sbjct: 284 DTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIF 343

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG-- 239
            S+      E  +     L+D+  +AGR+ EA    + +P +        + G A+L   
Sbjct: 344 ESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGN 403

Query: 240 --LDEEAIELFRKLQVEGMISNYV----TYASV 266
             + E A++   +L+ E    NYV     YAS+
Sbjct: 404 LEMGEAALKHLIELEPETS-GNYVLLSNMYASI 435


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/607 (37%), Positives = 350/607 (57%), Gaps = 15/607 (2%)

Query: 39   NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
            NG L  +L    EM   G+      + T L AC     L  G ++H   +K  +   V +
Sbjct: 448  NGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 507

Query: 96   RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
               L+  Y+KC  +++A K+F  M  R+++SW AMI+ Y    +   AL  F  M  +  
Sbjct: 508  GNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKI 567

Query: 156  E--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--SHIYVGSSLLDMYAKAGRIH 211
            +  P+EFT  ++L +C+       GKQIH  +++S F   S   +  SL+D+Y K G + 
Sbjct: 568  KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLF 627

Query: 212  EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTAL 270
             AR  F+ + E+ ++S +++I GYAQ G   EA+ LF++LQ +   I ++V  +S++   
Sbjct: 628  SARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFV-LSSIIGVF 686

Query: 271  SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
            +  A L  GKQ+ + V++        + NSL+DMY KCG +  + + F  M  + VISW 
Sbjct: 687  ADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWT 746

Query: 331  AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
             M+ GY KHG+G++ V +FN M   N ++PD V YLAVLS CSH GM   G  +F ++++
Sbjct: 747  VMITGYGKHGLGKKAVSIFNKMLRHN-IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 805

Query: 391  CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
             + G +P +EHY CVVD+LGRAGR+ EA   +  MP +P   I  +LL  CRVH ++++G
Sbjct: 806  TQ-GIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELG 864

Query: 451  EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQI 510
            + VG+ L+ I+ +N  NYV++SNLY  AG W +    REL   K + K+ G SW+E+++ 
Sbjct: 865  KEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIERE 924

Query: 511  LHTFHASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            +H F + + SHP+   +   +K++  + +E  GYV  +   L+D+D+E KE+ L  HSEK
Sbjct: 925  VHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSEK 984

Query: 570  LALTFGLIG---TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
            LA+   L       +G  IRV KNLR+CVDCH F K +SK+      +RD  RFH   +G
Sbjct: 985  LAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDG 1044

Query: 627  TCSCGDY 633
             CSCGDY
Sbjct: 1045 CCSCGDY 1051



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 9/325 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y KC     A K+FD M ERNVVSWTA++S +        +L+LF  M R    PN
Sbjct: 410 LIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPN 469

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           EFTF+T L +C      E G QIH   +K  FE  + VG+SL+DMY+K GRI+EA  VF 
Sbjct: 470 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 529

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS---NYVTYASVLTALSGLAA 275
            +  R ++S  A+I+GY   G    A+  F  +Q E  I    +  T  S+L A S    
Sbjct: 530 WMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQ-EAKIKERPDEFTLTSLLKACSSTGM 588

Query: 276 LGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +  GKQ+H  ++R  F  PS   +  SL+D+Y KCG+L  +R+ FD + E+T+ISW++++
Sbjct: 589 IYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLI 648

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
           +GY++ G   E + LF  ++E +  + DS    +++   +   +  +G  +   +V    
Sbjct: 649 LGYAQEGDFVEAMGLFKRLQELSS-QIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPS 707

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEA 418
           G E  + +   +VDM  + G V EA
Sbjct: 708 GLETSVSN--SLVDMYLKCGLVDEA 730


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 346/577 (59%), Gaps = 5/577 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           + T L+AC +   ++ G + H  + K       Y+++ L+  Y++C  +  A ++ D + 
Sbjct: 120 FTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVP 179

Query: 120 --RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
                ++ S+ ++++A  +     EA+ +  RM+      +  T+  V+  CA     +L
Sbjct: 180 GEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQL 239

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G ++H+ +++       +VGS L+DMY K G +  AR VF+ L  R+VV  TA+++ Y Q
Sbjct: 240 GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  EE++ LF  +  EG + N  T+A +L A +G+AAL HG  +H+ V +    ++V++
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIV 359

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           +N+LI+MYSK GS+  S  VF +M  R +I+WNAM+ GYS HG+G++ +++F  M    +
Sbjct: 360 RNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEE 419

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
             P+ VT++ VLS  SH G+   G    + ++      EP +EHY C+V +L RAG + E
Sbjct: 420 C-PNYVTFIGVLSAYSHLGLVKEGFYYLNHLMR-NFKIEPGLEHYTCMVALLSRAGLLDE 477

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A  F+K    +       +LL AC VH N D+G  + + +++++P + G Y +LSN+YA 
Sbjct: 478 AENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAK 537

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           A RW+ V  +R+LM+E+ + K+PG SW+++   +H F +   +HP   ++  KV+QL   
Sbjct: 538 ARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLAL 597

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K  GYVP+++ VL+DV++EQKE  L  HSEKLAL +GL+  P  APIR+IKNLR+C DC
Sbjct: 598 IKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDC 657

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +SKV  R + +RD NRFHH  +G+C+C D+W
Sbjct: 658 HTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 184/367 (50%), Gaps = 10/367 (2%)

Query: 68  CVNQRTLRGGQRVHAHMI---KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           C + + L  G+ +HA  +   +T     +     L+  Y KC  L  AR +FD M  RNV
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNV 81

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW  +++ Y    +  E L LF  M+   +  PNE+ F T L++C+     + G Q H 
Sbjct: 82  VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGL 240
           L+ K     H YV S+L+ MY++   +  A  V + +P     D+ S  ++++   + G 
Sbjct: 142 LLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGR 201

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEA+E+ R++  E +  ++VTY  V+   + +  L  G +VH+ +LR  +     + + 
Sbjct: 202 GEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSM 261

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY KCG +  +R VFD +  R V+ W A++  Y ++G   E + LF  M  E  + P
Sbjct: 262 LIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTL-P 320

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +  T+  +L+ C+ G    R   + H  V+ K GF+  +     +++M  ++G +  +  
Sbjct: 321 NEYTFAVLLNACA-GIAALRHGDLLHARVE-KLGFKNHVIVRNALINMYSKSGSIDSSYN 378

Query: 421 FIKNMPF 427
              +M +
Sbjct: 379 VFTDMIY 385



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 279 GKQVHSHVL---RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           GK +H+  L   +    S++   NSL+ +Y KCG L  +R +FD M  R V+SWN ++ G
Sbjct: 31  GKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAG 90

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y   G   EV+ LF  M       P+   +   LS CSHGG    G+   H ++  K G 
Sbjct: 91  YLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQC-HGLL-FKFGL 148

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
                    +V M  R   V  AL+ +  +P E    I 
Sbjct: 149 VCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIF 187


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 355/563 (63%), Gaps = 4/563 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVF-YNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           L+  Q++HA +I T       L T+L+ F Y     +S  R++F  + + +   + ++I+
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
             S+ +   E+L  + RML ++   + +TF+ V+ S A    F +G+ IH  +    +  
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
             YV ++L+  YAK+G +  AR VF+ +PE+ VV+  ++ISGY Q G  +EA+ELF  +Q
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G+  +  T+ S+L+A + + A+G G  VH ++ R      VVL  +L++MYS+CG+++
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +R VFD+M E+ +++W AM+ GY  HG G + +ELFN M  +   +P++VT++AVLS C
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGP-RPNNVTFVAVLSAC 330

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA 431
           +H G+ D G  +F   +  + G  P +EH  C+VDMLGRAG + EA +FIKN  P EP  
Sbjct: 331 AHAGLVDEGRQIF-TTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389

Query: 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491
           A+  ++LGAC++H N D+G  V + L+ IEPEN G+YV+LSN+YA AGR + V ++R +M
Sbjct: 390 AVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIM 449

Query: 492 KEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551
               + K+ G S I++D  ++ F   D+SHP   ++   + +L  + +EAGY+P    V+
Sbjct: 450 IRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVM 509

Query: 552 YDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
           ++V+EE++E  L  HSEKLA+ FGL+ T  G  IR++KNLR+C DCH   K++S +  R+
Sbjct: 510 HEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANRE 569

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +++RD+ RFHH  +G+CSC DYW
Sbjct: 570 INVRDRLRFHHFKDGSCSCQDYW 592



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 9/170 (5%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  LG++     + +LL+AC     +  G  VH ++ + C+   V L T L+  Y++C  
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S AR++FD M E+N+V+WTAMIS Y    H  +A+ LF  M      PN  TF  VL++
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 169 CAGAFGFELGKQIHSLI-----IKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           CA A   + G+QI + +     +  + E  +     ++DM  +AG ++EA
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQV----CMVDMLGRAGHLNEA 375


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/490 (42%), Positives = 307/490 (62%), Gaps = 8/490 (1%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY----A 205
           ML     PN+FT+  VL +CAG     LGK +H  ++K  F   + V ++L+ MY     
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
             G I  AR VF+ + + D VS +A+I GY ++G   +AI LFR++Q++G+  + +T  S
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           VL+A +GL AL  GK V S+V +  +   V L N+LIDM++KCG +  +  +F +M ER 
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           ++SW +++ G + HG G E V +F  M     V PD V ++ +LS CSH G+ D+G   F
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG-VTPDDVVFIGLLSACSHSGLVDKGKRYF 239

Query: 386 HEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
             +   KD    P+IEHYGC+VDML RAG V EAL+F++ MP +P   +  +L+ ACR H
Sbjct: 240 DSMR--KDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAH 297

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
             + +GE + ++L+  EP +  NYV+LSN+YA    WE  TR+RE M  K + K PG + 
Sbjct: 298 GELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           IELD  ++ F A D+SH   +E+   V ++  + K AGY+P  + VL D+D+E KE  L 
Sbjct: 358 IELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLN 417

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLA+ F L+ TP G  IR++KNLR+C DCH+ +KF+SK+Y R++ +RD+NRFHH  
Sbjct: 418 RHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFK 477

Query: 625 EGTCSCGDYW 634
            G CSC D+W
Sbjct: 478 NGLCSCRDFW 487



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 6/286 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC----LSDARKMF 116
           Y  +L AC     L  G+ VH  ++K  +   V ++  L+  Y  C      +  ARK+F
Sbjct: 13  YPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVF 72

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           DEM + + VSW+AMI  Y +   S +A+NLF  M      P+E T  +VL++C G    E
Sbjct: 73  DEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALE 132

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LGK + S + K   + ++ + ++L+DM+AK G + +A  +F  + ER++VS T++I G A
Sbjct: 133 LGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLA 192

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYV 295
             G   EA+ +F ++   G+  + V +  +L+A S    +  GK+    + + F I   +
Sbjct: 193 MHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKI 252

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
                ++DM  + G +  + +    M  +   + W  ++     HG
Sbjct: 253 EHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 340/573 (59%), Gaps = 4/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            L+ A      L  G+ VHA+ I+      + +   LI  Y KC C+      F+ M E+
Sbjct: 354 NLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEK 413

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SWT +I+ Y+Q     EA+NLF ++     + +     +VL +C+G       ++IH
Sbjct: 414 DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH 473

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             + K +  + I + ++++++Y + G    AR  FE +  +D+VS T++I+     GL  
Sbjct: 474 GYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPV 532

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+ELF  L+   +  + +   S L+A + L++L  GK++H  ++R        + +SL+
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLV 592

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+ CG++  SR++F ++ +R +I W +M+     HG G E + LF  M +EN V PD 
Sbjct: 593 DMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDEN-VIPDH 651

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+LA+L  CSH G+   G   F EI+      EP  EHY C+VD+L R+  + EA +F+
Sbjct: 652 ITFLALLYACSHSGLMVEG-KRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFV 710

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++MP +P++ +  +LLGAC +H N ++GE   + L++ + +N+G Y ++SN++A+ GRW 
Sbjct: 711 RSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWN 770

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEA 541
           DV  VR  MK   + K+PG SWIE+D  +HTF A D+SHP  +++  K+ Q +    K+ 
Sbjct: 771 DVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKG 830

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+     V ++V EE+K ++L  HSE+LAL +GL+ TP+G  IR+ KNLRIC DCH F 
Sbjct: 831 GYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFF 890

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K  S+V  R + +RD NRFHH   G CSCGD+W
Sbjct: 891 KIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 198/394 (50%), Gaps = 9/394 (2%)

Query: 21  LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE-YDTLLNACVNQRTLRGGQR 79
           L + S   N  N  TL    Q +  L+    L    R E  +  LL+ CV  + L  GQ+
Sbjct: 9   LPLKSISVNTLNKGTLNPAFQ-SLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQ 67

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HA ++K+      +L T+L+  Y KC  L DA K+FDEM ER + +W AM+ A+     
Sbjct: 68  LHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGK 125

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
             EA+ L+  M       +  TF +VL +C       LG +IH + +K  F   ++V ++
Sbjct: 126 YLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNA 185

Query: 200 LLDMYAKAGRIHEARGVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           L+ MY K G +  AR +F+   + + D VS  +IIS +   G   EA+ LFR++Q  G+ 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA 245

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           SN  T+ + L  +   + +  G  +H   L+    + V + N+LI MY+KCG +  + RV
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERV 305

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F +M  R  +SWN +L G  ++ + R+ +  F  M+   + KPD V+ L +++     G 
Sbjct: 306 FASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ-KPDQVSVLNLIAASGRSGN 364

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
              G  V    +  ++G +  ++    ++DM  +
Sbjct: 365 LLNGKEVHAYAI--RNGLDSNMQIGNTLIDMYAK 396



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 174/337 (51%), Gaps = 5/337 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  LG+ +    + ++L AC      R G  +H   +K  +   V++   LI  Y KC 
Sbjct: 135 EMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCG 194

Query: 108 CLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
            L  AR +FD   M + + VSW ++ISA+  +    EAL+LF RM       N +TF   
Sbjct: 195 DLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L         +LG  IH   +KSN  + +YV ++L+ MYAK GR+ +A  VF  +  RD 
Sbjct: 255 LQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDY 314

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS   ++SG  Q  L  +A+  FR +Q      + V+  +++ A      L +GK+VH++
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            +R  + S + + N+LIDMY+KC  + +    F+ M E+ +ISW  ++ GY+++    E 
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEA 434

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           + LF  ++ +  +  D +   +VL  CS  G++ R  
Sbjct: 435 INLFRKVQVKG-MDVDPMMIGSVLRACS--GLKSRNF 468


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 337/571 (59%), Gaps = 5/571 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     L  G+ V        Y   +++ + ++  Y KC  + DA K+FD MR+R+ 
Sbjct: 110 LSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDR 169

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+W+ M++ +       +A+ +++RM R   E +E     V+ +CA      +G  +H  
Sbjct: 170 VTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGY 229

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           +++   +  + + +SL+DMYAK G   +AR VFE +P R+ VS +A+IS  AQ G  +EA
Sbjct: 230 LLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEA 289

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLID 303
           + LFR +QV G+  N       L A S L  L  GK +H  +LR  E+   V    ++ID
Sbjct: 290 LGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMV--GTAVID 347

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGSL+ ++ +FD +  R +ISWN M+     HG GR+ + LF  M+  N+V+PD  
Sbjct: 348 MYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKR-NEVRPDHA 406

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+ ++LS  SH G+ + G   F+ +V+ + G EP  +H  C+VD+L R+G V EA   + 
Sbjct: 407 TFASLLSALSHSGLVEEGKFWFNCMVN-EYGIEPGEKHLVCIVDLLARSGLVEEANGLVA 465

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           ++  +PT +IL +LL  C  +  +++GE   ++++E++P + G   ++SNLYA+A  W  
Sbjct: 466 SLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYK 525

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V  VR+LMK+    K PG S IE+   LHTF   D+SHP   ++   V +L  + ++ GY
Sbjct: 526 VREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGY 585

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           +P    V +D++E  KE++L  HSE+LA  FGL+ T  G  + VIKNLR+C DCH+  K+
Sbjct: 586 IPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKY 645

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 646 MSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 183/361 (50%), Gaps = 17/361 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMI----KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE- 118
           LL++C   RTL    R+HA +I     +C+     L + L   Y +   L+ A       
Sbjct: 9   LLSSCAALRTL---TRLHALLIVSSSASCHH---ILSSCLATAYARAGDLAAAESTLATA 62

Query: 119 -MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
                ++ +W A+++A+S+ A   EAL +F R L     P+  TF   L++CA       
Sbjct: 63  PTSPSSIPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGDLAT 121

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           G+ +      + + + I+V SS+L++YAK G + +A  VF+ + +RD V+ + +++G+  
Sbjct: 122 GEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVN 181

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   +AIE++ +++ +G+ ++ V    V+ A +       G  VH ++LR  +   VV+
Sbjct: 182 AGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVI 241

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             SL+DMY+K G    +RRVF+ M  R  +SW+A++   +++G   E + LF +M + + 
Sbjct: 242 STSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMM-QVSG 300

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + P+S   +  L  CS  G+   G ++   I+      E +      V+DM  + G +  
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT---LELDRMVGTAVIDMYSKCGSLSS 357

Query: 418 A 418
           A
Sbjct: 358 A 358


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/602 (37%), Positives = 348/602 (57%), Gaps = 34/602 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +++AC     L  G++V+A +  +       + + L+  Y KC  +  A+++FDE    N
Sbjct: 242 VISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASN 301

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +    AM S Y ++  + EAL +F  M+ S   P+  +  + ++SC+       GK  H 
Sbjct: 302 LDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHG 361

Query: 184 LIIKSNFESHIYVGSSLLDMYAKA-------------------------------GRIHE 212
            ++++ FES   + ++L+DMY K                                G +  
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALS 271
           A   FE +PE+++VS   IISG  Q  L EEAIE+F  +Q  EG+ ++ VT  S+ +A  
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACG 481

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL   K ++ ++ +  I   V L  +L+DM+S+CG    +  +F++++ R V +W A
Sbjct: 482 HLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTA 541

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
            +   +  G     +ELF+ M E+  +KPD V ++  L+ CSHGG+  +G  +F+ ++  
Sbjct: 542 AIGAMAMAGNAERAIELFDDMIEQG-LKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE  HYGC+VD+LGRAG + EA++ I++MP EP   I  SLL ACRV  NV++  
Sbjct: 601 H-GVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAA 659

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           +  +++  + PE  G+YV+LSN+YASAGRW D+ +VR  MKEK + K PG S I++    
Sbjct: 660 YAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKT 719

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F + D SHP    + A + ++S +    G+VPD+S VL DVDE++K  +L  HSEKLA
Sbjct: 720 HEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLA 779

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + +GLI + +G  IR++KNLR+C DCH+FAKF SKVY R++ LRD NRFH+I +G CSCG
Sbjct: 780 MAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCG 839

Query: 632 DY 633
           D+
Sbjct: 840 DF 841



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 206/400 (51%), Gaps = 34/400 (8%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC   R    G ++H  ++K  Y   ++++  L+ FY +C  L  ARK+FDEM ERNV
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSWT+MI  Y+++  + +A++LF RM+R +   PN  T   V+++CA     E G+++++
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I  S  E +  + S+L+DMY K   I  A+ +F+     ++  C A+ S Y + GL  E
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ +F  +   G+  + ++  S +++ S L  +  GK  H +VLR    S+  + N+LID
Sbjct: 321 ALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG----------------------- 340
           MY KC     + R+FD MS +TV++WN+++ GY ++G                       
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 341 --------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
                   +  E +E+F  M+ +  V  D VT +++ S C H G  D    +++ I   K
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE--K 498

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           +G + ++     +VDM  R G    A+    ++     +A
Sbjct: 499 NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 4/194 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++ +AC +   L   + ++ ++ K   +  V L T L+  +++C     A  +F+ +  R
Sbjct: 475 SIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +WTA I A +   ++  A+ LF  M+    +P+   F   LT+C+     + GK+I 
Sbjct: 535 DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIF 594

Query: 183 SLIIKSNFES--HIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLG 239
             ++K +  S   ++ G  ++D+  +AG + EA  + E +P E + V   ++++     G
Sbjct: 595 YSMLKLHGVSPEDVHYG-CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653

Query: 240 LDEEAIELFRKLQV 253
             E A     K+QV
Sbjct: 654 NVEMAAYAAEKIQV 667



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 310 SLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           SL++++ VF+N  S  T   +N+++ GY+  G+  E + LF L    + + PD  T+   
Sbjct: 82  SLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLF-LRMMNSGISPDKYTFPFG 140

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           LS C+    +  G+ +   IV  K G+  ++     +V      G +  A +    M   
Sbjct: 141 LSACAKSRAKGNGIQIHGLIV--KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198

Query: 429 PTAAILGSLLGACRVHYNVDIGE--FVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
              +    + G  R  +  D  +  F   R  E+ P    N V +  + ++  + ED+
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTP----NSVTMVCVISACAKLEDL 252


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 351/574 (61%), Gaps = 7/574 (1%)

Query: 65   LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
            L++C +   +  G+++H   +K      V +   L+  Y +C  + + +K F  M + + 
Sbjct: 497  LSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDH 556

Query: 125  VSWTAMISAYSQKAHS-FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW ++I A +    S  EA+  F+ M+R+  +PN  TF T+L + +     ELGKQIH+
Sbjct: 557  VSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHA 616

Query: 184  LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDE 242
            L++K N  +   + ++LL  Y K G +     +F  + +R D VS  ++ISGY    L  
Sbjct: 617  LVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLP 676

Query: 243  EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
            +A+++   +  +G   +  T+A+VL+A + +A L  G +VH   +R  + S +V+ ++L+
Sbjct: 677  KAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALV 736

Query: 303  DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
            DMY+KCG + Y+ R F+ M  R + SWN+M+ GY++HG G + ++LF  M+ +  + PD 
Sbjct: 737  DMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPL-PDH 795

Query: 363  VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
            VT++ VLS CSH G+ + G + F  + +   G  P +EH+ C+VD+LGR G + +  +F+
Sbjct: 796  VTFVGVLSACSHAGLVNEGFSHFDSMSEIY-GLAPRMEHFSCMVDLLGRVGELNKMEDFL 854

Query: 423  KNMPFEPTAAILGSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
              MP +P   I  ++LGAC R +  N  +G    + L+E+EP NA NY++LSN+YAS G+
Sbjct: 855  NQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGK 914

Query: 481  WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
            W+DV + R  M++  V K+ G SW+ +   +H F A D+SHP ++ +  K+K+L+ K + 
Sbjct: 915  WDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRL 974

Query: 541  AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
            AGY+P+    LYD++ E KE++L  HSEK+A+ F ++  P   PIR++KNLR+C DCH+ 
Sbjct: 975  AGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSA 1033

Query: 601  AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K++S++  R++ LRD NRFHH   G CSCGD+W
Sbjct: 1034 FKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 183/357 (51%), Gaps = 10/357 (2%)

Query: 75  RGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           R G  VHA +I++      + +   LI  Y KC  ++DA  +F  M  ++ V+W +MI+ 
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITG 464

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
             Q     EA+  F  M R++  P+ FT  + L+SCA      +G+Q+H   +K   +  
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLD 524

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE-EAIELFRKLQ 252
           + V ++LL +Y + G + E +  F  + + D VS  ++I   A       EA+E F  + 
Sbjct: 525 VSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMM 584

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G   N VT+ ++L A+S L+    GKQ+H+ VL+  + +   ++N+L+  Y KCG + 
Sbjct: 585 RAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMG 644

Query: 313 YSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371
           Y   +F  MS+R   +SWN+M+ GY  + +  + +++   M ++ + + D  T+  VLS 
Sbjct: 645 YCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQ-RLDGFTFATVLSA 703

Query: 372 CSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           C+     +RG+    E+  C  +   E +I     +VDM  + GR+  A  F + MP
Sbjct: 704 CATVATLERGM----EVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMP 756



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 165/306 (53%), Gaps = 11/306 (3%)

Query: 75  RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134
           +  + +H  + K  +   ++L   LI  Y +   L   RK+FDEM  RN+VSW+ +IS Y
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFES 192
           ++     EA  LF +M+     PN + F +V+ +C   G +G + G QIH L+ K+ + +
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 193 HIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            +   + L+ MY  A G +  AR  F+ +  R++VS  ++IS Y Q G    A ++F  +
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 252 QVE----GMISNYVTYASVLTALSGLAALGHG--KQVHSHVLRFEIPSYVVLQNSLIDMY 305
           Q E    G+  N  T+ S+++A   LA  G    +Q+ + V +      + + ++L+  +
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           +K GS+ Y++ +F  MS R V+S N +++G  +   G E VELF  M++  ++ P+S  Y
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS--Y 387

Query: 366 LAVLSG 371
           + +L+ 
Sbjct: 388 MIILTA 393



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 170/353 (48%), Gaps = 25/353 (7%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  ++ + M   G +     + T+L A  +      G+++HA ++K        +   L+
Sbjct: 575 EAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALL 634

Query: 101 VFYNKCECLSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
             Y KC  +     +F  M +R + VSW +MIS Y       +A+++   M++     + 
Sbjct: 635 ACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDG 694

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           FTFATVL++CA     E G ++H   +++  ES I +GS+L+DMYAK GRI  A   FE 
Sbjct: 695 FTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEM 754

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS-------G 272
           +P R++ S  ++ISGYA+ G   ++++LF +++++G + ++VT+  VL+A S       G
Sbjct: 755 MPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEG 814

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNA 331
            +      +++    R E  S       ++D+  + G L       + M  +  V+ W  
Sbjct: 815 FSHFDSMSEIYGLAPRMEHFS------CMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRT 868

Query: 332 MLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
           +L    +       +GR   E+   M   N     +V Y+ + +  + GG  D
Sbjct: 869 VLGACCRANGRNTALGRRAAEMLLEMEPTN-----AVNYILLSNMYASGGKWD 916



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 164/310 (52%), Gaps = 19/310 (6%)

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
           G +  +++H  + K+ F + +++ ++L+++YA+ G +   R VF+ +P R++VS + +IS
Sbjct: 88  GSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLIS 147

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS--GLAALGHGKQVHSHVLRFEI 291
           GY +  +  EA ELFRK+  +G + N+  + SV+ A    G   L  G Q+H  + + + 
Sbjct: 148 GYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQY 207

Query: 292 PSYVVLQNSLIDMYSKC-GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
            + V   N LI MY    G + Y+RR FD++  R ++S N+M+  Y + G      ++F+
Sbjct: 208 VNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFS 267

Query: 351 LMREE---NKVKPDSVTYLAVLSG-CSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGC 404
            M++E   + +KP+  T+ +++S  CS   + + GL +  +++    K GF  ++     
Sbjct: 268 TMQKEVMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVEKSGFLHDLYVGSA 324

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE- 463
           +V    +AG +G A    + M +    ++ G ++G  R       GE   +  ME++   
Sbjct: 325 LVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKR----GEEAVELFMEMKDSV 380

Query: 464 --NAGNYVIL 471
             N  +Y+I+
Sbjct: 381 ELNPNSYMII 390


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 345/573 (60%), Gaps = 3/573 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q  +  +++  +G       Y T+L  C     ++ G+++HAH++K  Y     +   L+
Sbjct: 197 QAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALL 256

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC  + +A  +F+ +R+RN++SWTA I+ + Q     +AL  F  M  S  EPNEF
Sbjct: 257 TLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEF 316

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           TF+ VL SC     F  G+  H+ +IK    S ++VG++++DMY+  G + EA   F+ +
Sbjct: 317 TFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM 376

Query: 221 PER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
                 VS  A+I+GY      E+A+E F ++  E +  N  TY+++  A S   +L   
Sbjct: 377 GRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATT 436

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
            Q+HS +++  + S + + +SLI+ Y++CGSL  + +VF  +S+  V+SWN+++  YS++
Sbjct: 437 VQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQN 496

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G   + + L   M EE   KP S T+L VLS CSH G+   G   F  +V      +PE 
Sbjct: 497 GDPWKAIFLLRKMIEEGN-KPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQ-DYSIQPEE 554

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
            H  C+VD+LGRAG++  AL+FIK +  +PTA+I   LL ACR + N+ + E+V +++++
Sbjct: 555 THCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILD 614

Query: 460 IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDR 519
           +EP +A  YV LSN+YA  GRW D    R LM++K ++K+PG SWIE++  ++ F + D+
Sbjct: 615 LEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDK 674

Query: 520 SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT 579
           +HP   ++  K+KQL  + ++ GY P  + VL+    + KE+++L HSEKLA+ FGL+  
Sbjct: 675 AHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSL 734

Query: 580 PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           P G PIRV+KNLR+C+DC++  K++S++  R +
Sbjct: 735 PPGKPIRVLKNLRVCLDCYSTMKYISRITDRYI 767



 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 167/518 (32%), Positives = 280/518 (54%), Gaps = 72/518 (13%)

Query: 59   EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
            + Y   ++     R L  G+ +HAH++        Y   +L+ FY +C  LS+ARK+FD+
Sbjct: 804  DTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDK 863

Query: 119  MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
            +   N+  W  +  A +++    EAL+ F  M +    PN+F   ++L +C        G
Sbjct: 864  IPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTG 923

Query: 179  KQIHSLIIKSNFESHIY-------------------------------VGSSLLDMYAKA 207
            + +H++I+K++FES  Y                               V ++++  YA+ 
Sbjct: 924  ENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQH 983

Query: 208  GRIHEARGVFECLP---------------------------------------ERDVVSC 228
            G +HEA  + + +                                        E DVVS 
Sbjct: 984  GFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSW 1043

Query: 229  TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            T++ISG+ Q   + E  + F+++  +G   + VT +S+L A + +A L HGK++H + + 
Sbjct: 1044 TSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMV 1103

Query: 289  FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
              +   V ++++L+DMY+KCG ++ ++ +F  M ER  ++WN+++ GY+ HG   E +EL
Sbjct: 1104 IGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIEL 1163

Query: 349  FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
            FN M EE+  K D +T+ AVL+ CSH GM + G ++F ++ + K   EP +EHY C+VD+
Sbjct: 1164 FNQM-EESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQE-KYRIEPRLEHYACMVDL 1221

Query: 409  LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
            LGRAG++ EA + IK MP EP   + G+LLGACR H N+++ E   + L E+EPE+ G+ 
Sbjct: 1222 LGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSS 1281

Query: 469  VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
            ++LSNLYA AGRW +  +++++MK++   K PG SWIE
Sbjct: 1282 LLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 168/312 (53%), Gaps = 2/312 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + L+ C  +  +  G+R H  ++K       ++ T LI  Y KC  +  A +++D+M   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +  +   +ISAY++     +A  +F+++    T PN +T++T+L  C      + GKQ+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++K  + S   VG++LL +Y+K G + EA  VFE L +R+++S TA I+G+ Q G  +
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFK 297

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A++ F  ++  G+  N  T++ VL +   +     G+  H+ V++  + S V +  ++I
Sbjct: 298 KALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAII 357

Query: 303 DMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           DMYS  G +  + + F  M    + +SWNA++ GY  +    + +E F  M +E+ V  +
Sbjct: 358 DMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKED-VACN 416

Query: 362 SVTYLAVLSGCS 373
             TY  +   CS
Sbjct: 417 EFTYSNIFKACS 428



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 147/264 (55%), Gaps = 7/264 (2%)

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           + L+ C      ELG++ H  ++K    S  +V +SL+DMYAK G +  A  V++ +   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           D  +C  +IS YA+ G   +A ++F ++   G   N+ TY+++L     ++A+  GKQ+H
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           +HV++ +  S   + N+L+ +YSKCG +  +  VF+++ +R +ISW A + G+ +HG  +
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFK 297

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLS--GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
           + ++ F++MRE   ++P+  T+  VL+  GC    ++ R   +FH  V  K G    +  
Sbjct: 298 KALKQFSMMRESG-IEPNEFTFSIVLASCGCVKDFIDGR---MFHTQV-IKKGMASGVFV 352

Query: 402 YGCVVDMLGRAGRVGEALEFIKNM 425
              ++DM    G + EA +  K M
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQM 376


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 367/600 (61%), Gaps = 14/600 (2%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
           +  +EM    L+M       ++ AC +N   +R   ++HA  + T     V +   LI  
Sbjct: 126 QLFLEMREAFLDMDGFTLSGIITACGINVGLIR---QLHALSVVTGLDSYVSVGNALITS 182

Query: 103 YNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
           Y+K   L +AR++F  + E R+ VSW +M+ AY Q     +AL L++ M       + FT
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR-IHEARGVFECL 220
            A+VLT+         G Q H+ +IKS +  + +VGS L+D+Y+K G  + + R VF+ +
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 221 PERDVVSCTAIISGYAQL-GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
              D+V    +ISGY+    L +EA+E FR+LQ  G   +  +   V++A S +++   G
Sbjct: 303 SNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 280 KQVHSHVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           +QVH   L+ +IPS  + + N+LI MYSKCG+L  ++ +FD M E   +S+N+M+ GY++
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HGMG + + LF  M E +   P ++T+++VL+ C+H G  + G  ++  ++  K G EPE
Sbjct: 423 HGMGFQSLHLFQRMLEMD-FTPTNITFISVLAACAHTGRVEDG-KIYFNMMKQKFGIEPE 480

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             H+ C++D+LGRAG++ EA   I+ +PF+P      +LLGACR+H NV++      RL+
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLL 540

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           +++P NA  YV+L+N+Y+  GR +D   VR+LM+++ V K PG SWIE+++ +H F A D
Sbjct: 541 QLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAED 600

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE---EQKEKVLLG-HSEKLALTF 574
             HPM +++   ++++  K K+ GY P++       D+   +++E++ LG HSEKLA++F
Sbjct: 601 TFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSF 660

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GL+ T EG PI V KNLRICVDCHN  K++S+V  R++++RD +RFH   +G CSCG YW
Sbjct: 661 GLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 34/221 (15%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF--- 217
           +F   L +C        GK +H+L IKS   +  Y+ +  L +Y+K  R+  AR VF   
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 218 -EC---------------------------LPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +C                           +P+ D VS   +I+ YA+ G  + A +LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           +++   +  +  T + ++TA      +G  +Q+H+  +   + SYV + N+LI  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 310 SLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELF 349
            L  +RR+F  +SE R  +SWN+M+V Y +H  G + +EL+
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELY 228


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 335/573 (58%), Gaps = 17/573 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRP----------PVYLRTRLIVFYNKCECLSDA 112
            LL     Q  L  G  VHA+ I+ C  P           V L T L+  Y KC  L  A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT---EPNEFTFATVLTSC 169
           R++FD M  RN V+W+A+I  +   +   +A  LF  ML        P   + A+ L +C
Sbjct: 178 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRAC 235

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           A      +G+Q+H+L+ KS   + +  G+SLL MYAKAG I +A  +F+ +  +D VS +
Sbjct: 236 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 295

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           A++SGY Q G  EEA  +F+K+Q   +  +  T  S++ A S LAAL HG+  H  V+  
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + S   + N+LIDMY+KCG +  SR+VF+ M  R ++SWN M+ GY  HG+G+E   LF
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M       PD VT++ +LS CSH G+   G   FH ++    G  P +EHY C+VD+L
Sbjct: 416 LEMNNLG-FPPDGVTFICLLSACSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLL 473

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            R G + EA EFI++MP      +  +LLGACRV+ N+D+G+ V + + E+ PE  GN+V
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSN+Y++AGR+++   VR + K +   K PG SWIE++  LH F   D+SHP   E+  
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           ++  + V  K+ GY PD S VL D++EE+KEK L+ HSEKLA+ +G++   E   I V K
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 653

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           NLR+C DCH   K +S V  R + +RD NRFHH
Sbjct: 654 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHH 686



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 185/377 (49%), Gaps = 20/377 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC        G+ +H H I    +  +++ T L+  Y KC CL DA  +F  M  R++
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 76

Query: 125 VSWTAMISAYSQKA--HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           V+W AM++ Y+     H   A  L ++M      PN  T   +L   A       G  +H
Sbjct: 77  VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 136

Query: 183 SLII----------KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +  I          KS     + +G++LLDMYAK G +  AR VF+ +P R+ V+ +A+I
Sbjct: 137 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 196

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH---GKQVHSHVLRF 289
            G+       +A  LF+ +  +G+   +++  S+ +AL   A+L H   G+Q+H+ + + 
Sbjct: 197 GGFVLCSRMTQAFLLFKAMLAQGLC--FLSPTSIASALRACASLDHLRMGEQLHALLAKS 254

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            + + +   NSL+ MY+K G +  +  +FD M+ +  +S++A++ GY ++G   E   +F
Sbjct: 255 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 314

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M+  N V+PD+ T ++++  CSH      G      ++    G   E      ++DM 
Sbjct: 315 KKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVI--IRGLASETSICNALIDMY 371

Query: 410 GRAGRVGEALEFIKNMP 426
            + GR+  + +    MP
Sbjct: 372 AKCGRIDLSRQVFNMMP 388



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 196/453 (43%), Gaps = 83/453 (18%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLR    PN +TF   L +C+       G+ IH   I +  ++ ++V ++LLDMY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE--LFRKLQVEGMISNYVTYASVL 267
           + +A  +F  +P RD+V+  A+++GYA  G+   A+   L  ++Q+  +  N  T  ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 268 TALSGLAALGHGKQVHSHVLRF----------EIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
             L+   AL  G  VH++ +R           ++   V+L  +L+DMY+KCGSL Y+RRV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE---------------------- 355
           FD M  R  ++W+A++ G+       +   LF  M  +                      
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 356 -------------NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
                        + V  D     ++LS  +  G+ D+ +A+F E+   KD        Y
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA-VKDTVS-----Y 294

Query: 403 GCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACR-----VHYNVDIGEFVG 454
             +V    + GR  EA    K M     EP AA + SL+ AC       H     G  + 
Sbjct: 295 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354

Query: 455 QRLM-EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
           + L  E    NA     L ++YA  GR +   +V  +M  + +      SW       +T
Sbjct: 355 RGLASETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRDIV-----SW-------NT 397

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
             A    H + +E +A    L ++    G+ PD
Sbjct: 398 MIAGYGIHGLGKEATA----LFLEMNNLGFPPD 426



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +A +   +M    +E       +L+ AC +   L+ G+  H  +I         +
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 363

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              LI  Y KC  +  +R++F+ M  R++VSW  MI+ Y       EA  LF+ M     
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQI-----HSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            P+  TF  +L++C+ +     GK       H   +    E +I     ++D+ ++ G +
Sbjct: 424 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFL 479

Query: 211 HEARGVFECLPER-DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            EA    + +P R DV    A++     Y  + L ++   + ++L  EG   N+V  +++
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG-TGNFVLLSNI 538

Query: 267 LTA 269
            +A
Sbjct: 539 YSA 541


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/627 (37%), Positives = 371/627 (59%), Gaps = 19/627 (3%)

Query: 25  SFPPNPQNLKTLCSNGQLTKALIEMATLGL--EMRFEEYDTL----------LNACVNQR 72
           +FP  P  +      G  T+     A  GL  +M+ +E+ ++          L AC    
Sbjct: 227 AFPEAPSVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPT 286

Query: 73  TLRGGQRVHAHMIKTCYRPPV-YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
            L   + +HA  ++         +   L+  Y +C  L  A ++F ++R + V SW  +I
Sbjct: 287 ELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLI 346

Query: 132 SAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           SA++Q+ ++  A+ LFI+M  +   +P+ F+  ++L +CA        K  H  I+++  
Sbjct: 347 SAHAQQ-NTAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGL 405

Query: 191 ESHIYVGSSLLDMYAKAGRI-HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           E    + +SLL  Y +  R  + AR +F+ + E+  V   A+ISGY+Q GL  E+++LFR
Sbjct: 406 ERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFR 465

Query: 250 KLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           ++Q VEG  S+ ++  S L A S L+++  GK++H   L+ ++     L +SLIDMYSKC
Sbjct: 466 EMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKC 525

Query: 309 GSLTYSRRVFDNMSERTV-ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           G +  +R  FD +  R   +SW AM+ GY+ +G+GRE VEL+  MR E  ++PD  TYL 
Sbjct: 526 GFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREG-MEPDEFTYLG 584

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           +L  C H GM + GL  F E+ +     E ++EHY CV+ ML RAGR  +A+  +  MP 
Sbjct: 585 LLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQ 644

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
           EP A IL S+L AC +H   ++G  V +RL+E+EP+ A +YV+ SN+YA + RW+D+ +V
Sbjct: 645 EPDAKILSSVLSACHIHGEAELGSDVAERLLELEPDKAEHYVLASNMYAGSRRWDDMRKV 704

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R+++++  + K+PG SWI++   +++F A +  HP  E++    + L  + +E GYVPD 
Sbjct: 705 RKMLRDAGIAKEPGCSWIDVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVPDT 764

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           + VL++++EE+K + L  HSEK A+TFGL+ T   A +RV KN+R+C DCHN A+ +SKV
Sbjct: 765 TVVLHELEEEEKVEALWWHSEKQAVTFGLLRTATPATVRVFKNIRMCKDCHNAARLISKV 824

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            GR + +RDK RFHH   G CSCGDYW
Sbjct: 825 TGRDIVVRDKKRFHHFRGGICSCGDYW 851



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 12/304 (3%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAY 134
           G++VHA   K       ++   L+  Y +C  + DA K+F  + +  RN+VSW A+++A 
Sbjct: 87  GRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMAAL 146

Query: 135 SQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           S        L LF   L +     +E T  TVL  CA     E G+ +H L  KS +++ 
Sbjct: 147 SGDPR--RGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWSETGRAVHGLAAKSGWDAP 204

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
             VG++L+DMYAK G + +A   F   P   VVS   ++  Y +      A  L R +Q+
Sbjct: 205 ARVGNALVDMYAKCGELADAERAFPEAPS--VVSWNVMLGAYTRNREAGAAFGLLRDMQI 262

Query: 254 E---GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV-VLQNSLIDMYSKCG 309
           +    + ++ +T  SVL A SG   L   +++H+  +R  + +    + N+L+  Y +CG
Sbjct: 263 KEHGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCG 322

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            L ++ RVF ++  +TV SWN ++  +++       +ELF  M     +KPD  +  ++L
Sbjct: 323 RLLHADRVFTDIRRKTVSSWNTLISAHAQQNTA-AAIELFIQMTNACGLKPDGFSIGSLL 381

Query: 370 SGCS 373
             C+
Sbjct: 382 MACA 385



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 9/317 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+L  C        G+ VH    K+ +  P  +   L+  Y KC  L+DA + F E    
Sbjct: 175 TVLPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPE--AP 232

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRML---RSDTEPNEFTFATVLTSCAGAFGFELGK 179
           +VVSW  M+ AY++   +  A  L   M          +E T  +VL +C+G       +
Sbjct: 233 SVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLR 292

Query: 180 QIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++H+  ++   + +   V ++L+  Y + GR+  A  VF  +  + V S   +IS +AQ 
Sbjct: 293 ELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQ 352

Query: 239 GLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
                AIELF ++    G+  +  +  S+L A +    L H K  H  +LR  +    V+
Sbjct: 353 N-TAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVI 411

Query: 298 QNSLIDMYSKCGSLTYSRRV-FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + SL+  Y +C    Y  RV FD M E+  + W AM+ GYS++G+  E ++LF  M+   
Sbjct: 412 RASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVE 471

Query: 357 KVKPDSVTYLAVLSGCS 373
                 ++  + L  CS
Sbjct: 472 GHCSSVISATSALMACS 488



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 16/224 (7%)

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWN 330
           + A   G+QVH+   +  +P    + NSL+ MY +CG +  + +VF  + +  R ++SWN
Sbjct: 81  VGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWN 140

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           A++   S  G  R  +ELF           D  T + VL  C+  G  + G AV H +  
Sbjct: 141 ALMAALS--GDPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWSETGRAV-HGLA- 196

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
            K G++        +VDM  + G + +A    +  P  P+      +LGA     N + G
Sbjct: 197 AKSGWDAPARVGNALVDMYAKCGELADAE---RAFPEAPSVVSWNVMLGA--YTRNREAG 251

Query: 451 EFVG-QRLMEIEPEN---AGNYVILSNLYASAGRWEDVTRVREL 490
              G  R M+I+      A    +LS L A +G  E ++R+REL
Sbjct: 252 AAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTE-LSRLREL 294


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 340/570 (59%), Gaps = 5/570 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC      R G+ VH ++IKT +   V +   LI  ++   C  +A  +F +M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSWTAMIS Y +     +A+  +  M      P+E T A+VL++CAG    + G  +H
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLH 420

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
               ++   S++ V +SL+DMY+K   I +A  VF  +P ++V+S T+II G        
Sbjct: 421 EFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSF 480

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  F+++ +  +  N VT  SVL+A + + AL  GK++H+H LR  +     L N+L+
Sbjct: 481 EALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALL 539

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY +CG +  +   F N  E+ V SWN +L GY++ G G   VELF+ M E + V PD 
Sbjct: 540 DMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESD-VNPDE 597

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T+ ++L  CS  GM   GL  F E ++ K    P ++HY  VVD+LGRAGR+ +A EFI
Sbjct: 598 ITFTSLLCACSRSGMVTDGLEYF-ESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFI 656

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           K MP +P  AI G+LL ACR++ NV++GE   Q + E++ ++ G Y++L NLYA +G+W+
Sbjct: 657 KKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWD 716

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V RVR++M+E  +T DPG SW+E+   +H F   D  HP  +E++A ++    K +  G
Sbjct: 717 EVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATG 776

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
                     D+D  + E +  GHSE+LA+ FGLI T  G PI V KNL +C +CHN  K
Sbjct: 777 LSMSKDSRRDDIDASKAE-IFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVK 835

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           F+SKV  R +S+RD  +FHH  +G CSCGD
Sbjct: 836 FISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 238/456 (52%), Gaps = 11/456 (2%)

Query: 29  NPQNL-KTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84
           NP +L   LC  G L KALI    M  L + +  E Y  LL  C  +R    G RVH+++
Sbjct: 61  NPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV 120

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
            KT  R  V L   L+  + +   L +A  +F +M ER++ SW  ++  Y++  +  EAL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           NL+ RML     P+ +TF  VL +C G      G+++H  +I+  FES + V ++L+ MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G I  AR VF+ +P RD +S  A+ISGY +  +  E + LF  ++   +  + +T  
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           SV++A   L     G++VH +V++    + V + NSLI M+S  G    +  VF  M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
            ++SW AM+ GY K+G+  + VE + +M  E  V PD +T  +VLS C+  G+ D+G+ +
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEG-VVPDEITIASVLSACAGLGLLDKGI-M 418

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            HE  D + G    +     ++DM  +   + +ALE    +P +   +    +LG    +
Sbjct: 419 LHEFAD-RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
            + +   F  Q ++ ++P    N V L ++ ++  R
Sbjct: 478 RSFEALFFFQQMILSLKP----NSVTLVSVLSACAR 509



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 231/487 (47%), Gaps = 40/487 (8%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +G+      +  +L  C     L  G+ VH H+I+  +   V +   LI  Y KC  
Sbjct: 186 MLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGD 245

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +  AR +FD M  R+ +SW AMIS Y +     E L LF  M     +P+  T  +V+++
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C       LG+++H  +IK+ F + + V +SL+ M++  G   EA  VF  +  +D+VS 
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA+ISGY + GL E+A+E +  ++ EG++ + +T ASVL+A +GL  L  G  +H    R
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + SYV++ NSLIDMYSKC  +  +  VF  +  + VISW ++++G   +    E +  
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK---DGFEP-------- 397
           F  M     +KP+SVT ++VLS C+  G    G  +    +      DGF P        
Sbjct: 486 FQQMIL--SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543

Query: 398 -----------------EIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSL 437
                            ++  +  ++    + G+ G A+E    M      P      SL
Sbjct: 544 RCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSL 603

Query: 438 LGAC-RVHYNVDIGEFVG--QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           L AC R     D  E+    +    I P N  +Y  + +L   AGR ED     E +K+ 
Sbjct: 604 LCACSRSGMVTDGLEYFESMEHKFHIAP-NLKHYASVVDLLGRAGRLEDAY---EFIKKM 659

Query: 495 AVTKDPG 501
            +  DP 
Sbjct: 660 PIDPDPA 666


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 348/608 (57%), Gaps = 12/608 (1%)

Query: 31  QNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR 90
           Q+ + LC+     K   EM  +  E+ +  + + L AC++      G+ +H  ++    +
Sbjct: 339 QDGRCLCA----LKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQ 394

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
             + +   LI FY KC  +++A+K+F  M + + V+W A+I  ++  A   EA+  F  M
Sbjct: 395 DELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLM 454

Query: 151 LRSDTEPNEF-TFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
               T   ++ T   +L SC       + G  IH+  + + F+   +V SSL+ MYAK G
Sbjct: 455 REGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCG 514

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +H +  +F+ L  +      AII+  A+ G  EEA++L  +++  G+  +   +++ L+
Sbjct: 515 DLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALS 574

Query: 269 ALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
             + LA L  G+Q+H   ++  FE+  +++  N+ +DMY KCG L  + R+    ++R+ 
Sbjct: 575 VAADLAMLEEGQQLHGSTIKLGFELDHFII--NAAMDMYGKCGELDDALRILPQPTDRSR 632

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           +SWN ++   ++HG   +  E F+ M +   VKP+ V+++ +LS CSHGG+ D GLA + 
Sbjct: 633 LSWNTLISISARHGQFHKAKETFHDMLKLG-VKPNHVSFVCLLSACSHGGLVDEGLAYYA 691

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            +     G +P IEH  C++D+LGR+GR+ EA  FI  MP  P   +  SLL +CR++ N
Sbjct: 692 SMTSVY-GIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRN 750

Query: 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIE 506
           +D+G    + L+E++P +   YV+ SN++A+ GRWEDV  VR  M    + K P  SW++
Sbjct: 751 LDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVK 810

Query: 507 LDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGH 566
               +  F   D++HP  E+++ K+  L     EAGYVPD S  L D DEEQKE  +  H
Sbjct: 811 WKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSH 870

Query: 567 SEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           SE++AL FGLI  PEG+ +R+ KNLR+C DCH+F KFVS V GRK+ LRD  RFHH   G
Sbjct: 871 SERIALAFGLINIPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNG 930

Query: 627 TCSCGDYW 634
            CSC DYW
Sbjct: 931 NCSCSDYW 938



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 205/426 (48%), Gaps = 8/426 (1%)

Query: 63  TLLNACVNQRTL-RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +L+ AC     + + G + H   IK      V++ T  + FY     +S+A+KMF+EM +
Sbjct: 63  SLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPD 122

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RNVVSWT+++ +YS      E +N + RM       NE   A V++SC       LG Q+
Sbjct: 123 RNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQL 182

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
               +K   E+ +   +SL+ M+   G I+EA  +F  + ERD +S  +IIS  AQ  L 
Sbjct: 183 LGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLH 242

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EE+   F  +++     NY T + +L+    +  L  GK VH   +++ + S + L N+L
Sbjct: 243 EESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTL 302

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + +YS  G    +  +F  M ER +ISWN+ML  Y + G     +++F  M    K + +
Sbjct: 303 LSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK-EIN 361

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            VT+ + L+ C        G  + H  V    G + E+     ++   G+  ++ EA + 
Sbjct: 362 YVTFTSALAACLDPEFFTNG-KILHGFVVVL-GLQDELIIGNTLITFYGKCHKMAEAKKV 419

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ-RLMEIEPENAGNYVILSNLYASAGR 480
            + MP +       +L+G      N ++ E V   +LM     +  +Y+ + N+  S   
Sbjct: 420 FQRMP-KLDKVTWNALIGG--FANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLT 476

Query: 481 WEDVTR 486
            ED+ +
Sbjct: 477 HEDLIK 482



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 11/373 (2%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           E+ +     LL+ C +   L+ G+ VH   +K      + L   L+  Y+      DA  
Sbjct: 258 EINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAEL 317

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F  M ER+++SW +M++ Y Q      AL +F  ML    E N  TF + L +C     
Sbjct: 318 IFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEF 377

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           F  GK +H  ++    +  + +G++L+  Y K  ++ EA+ VF+ +P+ D V+  A+I G
Sbjct: 378 FTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGG 437

Query: 235 YAQLGLDEEAIELFRKLQVEGMIS--NYVTYASVL-TALSGLAALGHGKQVHSH--VLRF 289
           +A      EA+  F KL  EG  S  +Y+T  ++L + L+    + +G  +H+H  V  F
Sbjct: 438 FANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGF 496

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           ++  +V  Q+SLI MY+KCG L  S  +FD +  +T   WNA++   +++G G E ++L 
Sbjct: 497 DLDQHV--QSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLV 554

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             MR    ++ D   +   LS  +   M + G  +    +  K GFE +       +DM 
Sbjct: 555 VRMRSAG-IEFDQFNFSTALSVAADLAMLEEGQQLHGSTI--KLGFELDHFIINAAMDMY 611

Query: 410 GRAGRVGEALEFI 422
           G+ G + +AL  +
Sbjct: 612 GKCGELDDALRIL 624



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 185/366 (50%), Gaps = 6/366 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G ++  H +K      V     LI  +  C  +++A  +F+EM ER+ +SW ++ISA +Q
Sbjct: 179 GHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQ 238

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                E+   F  M     E N  T + +L+ C      + GK +H L +K   ES+I +
Sbjct: 239 NTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICL 298

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++LL +Y+ AGR  +A  +F  +PERD++S  ++++ Y Q G    A+++F ++     
Sbjct: 299 CNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK 358

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             NYVT+ S L A        +GK +H  V+   +   +++ N+LI  Y KC  +  +++
Sbjct: 359 EINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKK 418

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHG 375
           VF  M +   ++WNA++ G++ +    E V  F LMRE +    D +T + +L  C +H 
Sbjct: 419 VFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHE 478

Query: 376 GMEDRGLAVF-HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            +   G+ +  H +V    GF+ +      ++ M  + G +  +      + F+ T+++ 
Sbjct: 479 DLIKYGIPIHAHTVV---TGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFK-TSSVW 534

Query: 435 GSLLGA 440
            +++ A
Sbjct: 535 NAIIAA 540



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 165/330 (50%), Gaps = 14/330 (4%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y+K   ++ A+ +FD M ERN  SW  M+S Y +     EA+  F  +     +P+ F  
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 163 ATVLTSC-AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           A+++T+C   +   + G Q H   IK      ++VG+S +  YA  G +  A+ +F  +P
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           +R+VVS T+++  Y+  G  +E I  +++++ EG+  N    A V+++   L  +  G Q
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +  H L+F + + V   NSLI M+  CG +  +  +F+ M+ER  ISWN+++   +++ +
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFE 396
             E    F+ MR  ++ + +  T   +LS C        G    GLAV       K G E
Sbjct: 242 HEESFRYFHWMRLVHE-EINYTTLSILLSICGSVDYLKWGKGVHGLAV-------KYGLE 293

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             I     ++ +   AGR  +A    + MP
Sbjct: 294 SNICLCNTLLSVYSDAGRSKDAELIFRRMP 323



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY+K GRI+ A+ VF+ + ER+  S   ++SGY ++G   EA+  FR +   G+  +   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 263 YASVLTALSGLAALG-HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
            AS++TA +  + +   G Q H   ++  +   V +  S +  Y+  G ++ ++++F+ M
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            +R V+SW +++V YS +G  +EV+  +  MR E     ++   L V+S C  G + D  
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIAL-VISSC--GFLMD-- 175

Query: 382 LAVFHEIVD--CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           + + H+++    K G E ++     ++ M G  G + EA      M
Sbjct: 176 IILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEM 221


>gi|297834310|ref|XP_002885037.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330877|gb|EFH61296.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/581 (38%), Positives = 346/581 (59%), Gaps = 20/581 (3%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  LL+AC++ ++L  G ++ + ++     R    L ++LI  ++ C  L  ARK+FD
Sbjct: 125 EAYTDLLHACISAKSLHHGIKICSLVLNNPSLRHDPKLLSKLITLFSVCRRLDLARKIFD 184

Query: 118 EMRERNVVS---WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           ++ + ++++   W AM   YS+     +AL +++ ML S  EP  F+ +  L +C     
Sbjct: 185 DVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD 244

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             +G+ IH  I+K   +    V + LL +Y + G   +AR VF+ + ER++V+  ++IS 
Sbjct: 245 LRVGRGIHGQIVKRKEKVDQVVYNVLLKLYMERGSFDDARKVFDGMSERNIVTWNSLISI 304

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
            ++     E   LFRK+Q E +  ++ T  ++L A S +AAL  GK++H+ +L+ +    
Sbjct: 305 LSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALITGKEIHAQILKSKEKPD 364

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V L NSL+DMY KCG + YSRRVFD M  + + +WN +L  Y+ +G   EV+ LF  M E
Sbjct: 365 VPLLNSLMDMYGKCGDVEYSRRVFDGMLTKDLTTWNTILNCYAINGNIEEVINLFEWMIE 424

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
              V PD +T++A+LSGCS  G+ + G+++F E +  +    P +EHY C+VD+LGRAG+
Sbjct: 425 SG-VAPDGITFVALLSGCSDTGLTEYGISLF-ERMKTEFRVSPALEHYACLVDILGRAGK 482

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA++ I+ MPF+P+A+I GSLL +CR+H NV +GE              G  + L   
Sbjct: 483 IEEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEI-------------GTMLWLRTY 529

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV-KQ 533
            A A  W++V ++RE+MK++ + K+ G SW+++   +  F A         +   KV  +
Sbjct: 530 IAEAKMWDNVDKIREMMKQRGIKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTE 589

Query: 534 LSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
           L    +++GY PD S VL+DVDEE K   + GHSE+LA T+ LI T EG P+RV KNLR+
Sbjct: 590 LQEAIEKSGYSPDTSVVLHDVDEETKANWVCGHSERLAATYSLIHTGEGVPVRVTKNLRV 649

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH++ K VS+V GR + LRD  RFHH V G CSC DYW
Sbjct: 650 CADCHSWMKIVSQVTGRVIVLRDTKRFHHFVAGICSCKDYW 690


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 352/583 (60%), Gaps = 15/583 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+AC + ++L+ G + HA++IK        + + L   Y+KC  L DA K F  +RE+N
Sbjct: 174 VLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKN 233

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+SWT+ +SA +      + L LF+ M+  D +PNEFT  + L+ C      ELG Q++S
Sbjct: 234 VISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYS 293

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL----- 238
           L IK  +ES++ V +SLL +Y K+G I EA  +F  + +  +V+  A+I+G+AQ+     
Sbjct: 294 LCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTK 353

Query: 239 ------GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
                     EA++LF KL + GM  +  T +SVL+  S + A+  G+Q+H+  ++    
Sbjct: 354 DNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFL 413

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           S V++  SLI MYSKCGS+  + + F  MS RT+I+W +M+ G+S+HGM ++ + +F  M
Sbjct: 414 SDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDM 473

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
                V+P++VT++ VLS CSH GM  + L  F EI+  K   +P ++HY C+VDM  R 
Sbjct: 474 SLAG-VRPNAVTFVGVLSACSHAGMVSQALNYF-EIMQKKYKIKPAMDHYECMVDMFVRL 531

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GR+ +AL FIK M +EP+  I  + +  C+ H N+++G +  ++L+ ++P++   YV+L 
Sbjct: 532 GRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLL 591

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y SA R+EDV+RVR++M+E+ V K    SWI +   +++F  + ++HP    +   ++
Sbjct: 592 NMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLE 651

Query: 533 QLSVKFKEAGY--VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
            L  K K  GY  +  +     + +EE+     + HSEKLA+TFGL   P  +PIRV+K+
Sbjct: 652 DLLAKVKNVGYEMLESVEISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNSSPIRVVKS 711

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
             IC D HNF K+VS + GR++ ++D  R H    G CSCG++
Sbjct: 712 TLICRDSHNFIKYVSTLAGREIIVKDSKRLHKFANGECSCGNF 754



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 196/369 (53%), Gaps = 14/369 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C++ R+    Q VH H++KT      ++ + L+  Y KC  + DAR++FD M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RNVV+WT ++  + Q +    A+++F  ML + + P+ +T + VL +C+     +LG Q
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H+ IIK + +    VGS+L  +Y+K GR+ +A   F  + E++V+S T+ +S  A  G 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             + + LF ++    +  N  T  S L+    + +L  G QV+S  ++F   S + ++NS
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH-----------GMGREVVELF 349
           L+ +Y K G +  + R+F+ M + ++++WNAM+ G+++              G E ++LF
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLF 369

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           + +     +KPD  T  +VLS CS     ++G  +  + +  K GF  ++     ++ M 
Sbjct: 370 SKLNLSG-MKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTI--KTGFLSDVIVSTSLISMY 426

Query: 410 GRAGRVGEA 418
            + G +  A
Sbjct: 427 SKCGSIERA 435



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 161/324 (49%), Gaps = 28/324 (8%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   K L   +EM  + ++       + L+ C    +L  G +V++  IK  Y   + +
Sbjct: 247 NGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRV 306

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH-----------SFEAL 144
           R  L+  Y K  C+ +A ++F+ M + ++V+W AMI+ ++Q                EAL
Sbjct: 307 RNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEAL 366

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            LF ++  S  +P+ FT ++VL+ C+     E G+QIH+  IK+ F S + V +SL+ MY
Sbjct: 367 KLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 426

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           +K G I  A   F  +  R +++ T++I+G++Q G+ ++A+ +F  + + G+  N VT+ 
Sbjct: 427 SKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFV 486

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEI--PSYVVLQ-----NSLIDMYSKCGSLTYSRRV 317
            VL+A S      H   V   +  FEI    Y +         ++DM+ + G L  +   
Sbjct: 487 GVLSACS------HAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNF 540

Query: 318 FDNMS-ERTVISWNAMLVGYSKHG 340
              M+ E +   W+  + G   HG
Sbjct: 541 IKKMNYEPSEFIWSNFIAGCKSHG 564



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 6/293 (2%)

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFT---FATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           QK+H F  L+    +L +     E     +  +L  C     +   + +H  ++K+    
Sbjct: 41  QKSHRFTHLDFGETLLLTKEGTEEEEKLFYVPLLQQCLDTRSYSETQIVHGHVMKTGCHD 100

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           + +V S L+++YAK G + +AR VF+ +  R+VV+ T ++ G+ Q    + AI +F+++ 
Sbjct: 101 NFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEML 160

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G   +  T ++VL A S L +L  G Q H++++++ +     + ++L  +YSKCG L 
Sbjct: 161 YAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLE 220

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            + + F  + E+ VISW + +   + +G   + + LF  M   + +KP+  T  + LS C
Sbjct: 221 DALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVD-IKPNEFTLTSALSQC 279

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                 + G  V+   +  K G+E  +     ++ +  ++G + EA      M
Sbjct: 280 CEILSLELGTQVYSLCI--KFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRM 330


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/530 (42%), Positives = 332/530 (62%), Gaps = 9/530 (1%)

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           DAR+ FDE+ + N V  TAM S Y +    + +L LF  M+ SD+       A ++   A
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 171 GAFGFELG--KQIHSLIIKSNFESHIYVGSSLLDMYAKAGR--IHEARGVFECLPERDVV 226
            A   + G    +H+LI K  FE +  V +++LD YAK G   +  AR VF+ + ERDVV
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVV 120

Query: 227 SCTAIISGYAQLGLDEEAIELFRK-LQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHS 284
           S  ++I+ YAQ G+  EAI L+ K L V G I  N V  ++VL A +   A+  GK +H+
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            V+R  +   V +  S++DMYSKCG +  + R F  + E+ ++SW+AM+ GY  HG G+E
Sbjct: 181 QVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQE 240

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            +E+F  M+    ++P+ +T+++VL+ CSH G+ D G   ++  +  + G E  +EHYGC
Sbjct: 241 ALEIFTEMKRSG-LRPNYITFISVLAACSHAGLLDEG-RYWYNAMKQEFGIEAGVEHYGC 298

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VD+LGRAG + EA   IK M  +P AAI G+LL ACR+H NV++ E   +RL E++  N
Sbjct: 299 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN 358

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           +G YV+LSN+YA AG W+DV R+R L+K + + K PG S  EL   ++ F+  D+SHP  
Sbjct: 359 SGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQH 418

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
            E+ + +++L  + +EAGYVP+   VL+D+DEE+KE  L  HSEKLA+ F L+ +   + 
Sbjct: 419 IEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSV 478

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I +IKNLR+C DCH   KF++K+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 479 IHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +   ++ G+ +H  +++      VY+ T ++  Y+KC  +  A + F +++E+
Sbjct: 161 AVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK 220

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N++SW+AMI+ Y       EAL +F  M RS   PN  TF +VL +C+ A   + G+  +
Sbjct: 221 NILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWY 280

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEA 213
           + + +    E+ +     ++D+  +AG + EA
Sbjct: 281 NAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 312


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/660 (35%), Positives = 365/660 (55%), Gaps = 77/660 (11%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQ 71
           SS++ T   LT P  P NPQ L                             +L N C   
Sbjct: 52  SSMSRTPNPLTNP--PSNPQIL-----------------------------SLFNPC--- 77

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC--ECLSDARKMFDEMRERNVVSWTA 129
           +TLR  ++VHA +I T +  P  L     +         L+ A+ +F  ++      + +
Sbjct: 78  KTLRHLKQVHAQII-THHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 136

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I A S      EAL L+  ML+S  +P+  T+  V+ +C  +     G  +H+ ++KS 
Sbjct: 137 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSG 196

Query: 190 FESHIYVGSSLLDMYA-------------------------------KAGRIHEARGVFE 218
           FE   Y+ SSL+ +YA                               K   +  AR VF+
Sbjct: 197 FECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD 256

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +  RDV+S   +I+GYA  G   EA+ LF +++  G+     T  S+L+A + L AL  
Sbjct: 257 RMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK 316

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G  +H+++    I    ++  +L+DMY+KCG ++ + +VF+ M  + V++WN ++ G + 
Sbjct: 317 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 376

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---GF 395
           HG  +E  +LF  M+E   V+P+ +T++A+LS CSH GM D G     +++DC     G 
Sbjct: 377 HGNVKEAQQLFKEMKEAG-VEPNDITFVAILSACSHAGMVDEG----QKLLDCMSSSYGI 431

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           EP++EHYGCV+D+L RAG + EA+E I  MP EP  + LG+LLG CR+H N ++GE VG+
Sbjct: 432 EPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGK 491

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           RL+ ++P ++G Y++LSN+YA+A +W+D  +VR LMK   ++K PG S IEL  ++H F 
Sbjct: 492 RLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFV 551

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
           A D SHP   ++  K+ ++  + K A GY  D   VL D++EE KE  L  HSEKLA+ +
Sbjct: 552 AGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAY 611

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GL+       IR++KNLR+C DCH+  K +SKVYGR++ +RD+NRFHH  +G CSC D+W
Sbjct: 612 GLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 339/576 (58%), Gaps = 37/576 (6%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           ++ T LI  Y +   L+ AR++ D M E+  ++W AMIS Y       +AL LF +M   
Sbjct: 224 FIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLL 283

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAK--- 206
             + +E T+ +V+++CA    F LGKQ+H+ I+K+         + VG++L+ +Y K   
Sbjct: 284 GVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGK 343

Query: 207 ----------------------------AGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
                                       AGR+ EA+  F  +PE+++++ T +ISG AQ 
Sbjct: 344 VDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQN 403

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  E+A++LF +++++G   N   +A  +TA S L AL +G+Q+H+ ++     S + + 
Sbjct: 404 GFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVG 463

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N++I MY++CG +  +R +F  M     +SWN+M+    +HG G + +EL+  M +E  +
Sbjct: 464 NAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEG-I 522

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD  T+L VLS CSH G+ + G   F+ +++   G  P  +HY  ++D+  RAG+  +A
Sbjct: 523 LPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE-NYGIAPGEDHYARMIDLFCRAGKFSDA 581

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
              I +MPFE  A I  +LL  CR H N+D+G    ++L ++ P++ G YV+LSN+YAS 
Sbjct: 582 KNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASL 641

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GRW DV R R+LM+++ V K+P  SW E++  +H F   D  HP    +   +++L+++ 
Sbjct: 642 GRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEM 701

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K+ GY+PD   VL+D++ E KE  L  HSEKLA+ FGL+  P+GA +RV KNLRIC DCH
Sbjct: 702 KKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCH 761

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           N  KF+SKV GR++ +RD  RFHH   G CSC +YW
Sbjct: 762 NAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 174/355 (49%), Gaps = 54/355 (15%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISAYSQKAHSFEALNLF 147
           +P V  RT LI  Y+    L  AR++F+E  +  R+ V + AMI+ YS       A+ LF
Sbjct: 76  QPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELF 135

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAK 206
             M  ++ +P++FTFA+VL++    F  E    Q+H  ++K   E    V ++LL +Y K
Sbjct: 136 RAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVK 195

Query: 207 A----------------------------------------GRIHEARGVFECLPERDVV 226
                                                    G +  AR + + + E+  +
Sbjct: 196 CASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGI 255

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +  A+ISGY   GL E+A+ LFRK+++ G+  +  TY SV++A +       GKQVH+++
Sbjct: 256 AWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYI 315

Query: 287 LRFEIPS----YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           L+ E+       + + N+LI +Y K G +  +R++F  M  + +I+WN +L GY   G  
Sbjct: 316 LKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRM 375

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            E    F  M E+N      +T+  ++SG +  G  ++ L +F+++    DG+EP
Sbjct: 376 EEAKSFFAQMPEKNL-----LTWTVMISGLAQNGFGEQALKLFNQMK--LDGYEP 423



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 172/350 (49%), Gaps = 41/350 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP----VYLRTRLIVFY 103
           +M  LG+++    Y ++++AC +      G++VHA+++K    P     + +   LI  Y
Sbjct: 279 KMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLY 338

Query: 104 NKCECLSDARKMFDE-------------------------------MRERNVVSWTAMIS 132
            K   +  ARK+F E                               M E+N+++WT MIS
Sbjct: 339 WKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMIS 398

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
             +Q     +AL LF +M     EPN++ FA  +T+C+     E G+Q+H+ I+    +S
Sbjct: 399 GLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDS 458

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            + VG++++ MYA+ G +  AR +F  +P  D VS  ++I+   Q G   +AIEL+ ++ 
Sbjct: 459 TLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQML 518

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSL 311
            EG++ +  T+ +VL+A S    +  G +  + +L  + I         +ID++ + G  
Sbjct: 519 KEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKF 578

Query: 312 TYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE-LFNLMREEN 356
           + ++ V D+M  E     W A+L G   HG   +G E  E LF L+ + +
Sbjct: 579 SDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 142/331 (42%), Gaps = 83/331 (25%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
           + L + +H  +I S F+   ++ + L+D+Y K+     AR +F+ +P+ DV++ T +I+ 
Sbjct: 29  YSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITA 88

Query: 235 YAQLG-------------LD--------------------EEAIELFRKLQVEGMISNYV 261
           Y+ LG             LD                      AIELFR ++      +  
Sbjct: 89  YSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDF 148

Query: 262 TYASVLTALSGLAALGHGK--QVHSHVLRFEIPSYVVLQNSLIDMYSKC----------- 308
           T+ASVL+A S L      +  Q+H  V++F I  +  + N+L+ +Y KC           
Sbjct: 149 TFASVLSA-STLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSL 207

Query: 309 -----------------------------GSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
                                        G LT +R + D M+E+  I+WNAM+ GY  H
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G+  + + LF  MR    V+ D  TY +V+S C+ GG    G  V   I+  K+   P+ 
Sbjct: 268 GLFEDALTLFRKMRLLG-VQVDESTYTSVISACADGGFFLLGKQVHAYIL--KNELNPDR 324

Query: 400 EHY----GCVVDMLGRAGRVGEALEFIKNMP 426
           +        ++ +  + G+V  A +    MP
Sbjct: 325 DFLLSVGNTLITLYWKYGKVDGARKIFYEMP 355



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%)

Query: 36  LCSNG---QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           L  NG   Q  K   +M   G E     +   + AC     L  G+++HA ++   +   
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDST 459

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           + +   +I  Y +C  +  AR MF  M   + VSW +MI+A  Q  H  +A+ L+ +ML+
Sbjct: 460 LSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK 519

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-----ESHIYVGSSLLDMYAKA 207
               P+  TF TVL++C+ A   E G +  + +++ N+     E H    + ++D++ +A
Sbjct: 520 EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE-NYGIAPGEDHY---ARMIDLFCRA 575

Query: 208 GRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKL 251
           G+  +A+ V + +P E       A+++G   +  + L  EA E   KL
Sbjct: 576 GKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKL 623



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 50/166 (30%)

Query: 273 LAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-- 328
           L++    + VH HV+   F++  ++V  N LID+Y K     Y+R++FD + +  VI+  
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIV--NRLIDIYWKSSDFVYARKLFDEIPQPDVIART 83

Query: 329 -------------------------------WNAMLVGYSKHGMGREVVELFNLMREENK 357
                                          +NAM+ GYS    G   +ELF  MR  N 
Sbjct: 84  TLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN- 142

Query: 358 VKPDSVTYLAVLS------------GCSHGGMEDRGLAVFHEIVDC 391
            +PD  T+ +VLS            G  HG +   G+ +F  +++ 
Sbjct: 143 FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNA 188


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/514 (39%), Positives = 311/514 (60%), Gaps = 2/514 (0%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y K   L  ARK+FDEM ERNV +W AM++  +      E+L  F+ M R    P+EF  
Sbjct: 183 YIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGL 242

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            +V   CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + E   V   LP 
Sbjct: 243 GSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS 302

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
             +VSC  II+G  Q G  E A+E F  ++  G+ ++ VT+ S +++ S LAAL  G+Q+
Sbjct: 303 LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQI 362

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  V++  +   V +   L+ MYS+CG L  S RVF           +AM+  Y  HG G
Sbjct: 363 HGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHG 422

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           ++ +ELF  M      +P  VT+LA+L  CSH G+++ G+  F E++    G +P ++HY
Sbjct: 423 QKAIELFKQMMN-GGAEPSDVTFLALLYACSHSGLKEEGMDCF-ELMTKTYGMQPSVKHY 480

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            CVVD+LGR+G + EA   I +MP  P   I  +LL AC+   N D+ E + +R++E++P
Sbjct: 481 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDP 540

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
            ++ +YV+LSN+ A++ RW DV+ VR+ M++  V K+PG SW+EL   +H F   D SHP
Sbjct: 541 HDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHP 600

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
            ++E+   ++++  K ++ GY PDMS VL+D+++E+KE  L  HSEKLA+ F  +  PEG
Sbjct: 601 RQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEG 660

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
            PIRV+KNLR+C DCH   K +S+V GR++ +RD
Sbjct: 661 VPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 34/271 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS----------- 227
           +Q+H+    S   +  +  + L+  YA  G +  AR +FE +P R+V+S           
Sbjct: 127 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 186

Query: 228 --------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+++G   LG DEE++  F  ++ EGM  +     SV 
Sbjct: 187 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 246

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              +GL  +  G+QVH++V+R  +   + + +SL  MY +CG L     V   +   +++
Sbjct: 247 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 306

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           S N ++ G +++G     +E F +MR    V  D VT+++ +S CS      +G  +  +
Sbjct: 307 SCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISSCSDLAALAQGQQIHGQ 365

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           ++  K G +  +    C+V M  R G +G++
Sbjct: 366 VM--KAGVDKVVPVMTCLVHMYSRCGCLGDS 394



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++   C   R +  G++VHA+++++     + + + L   Y +C CL +   +   +   
Sbjct: 244 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 303

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VS   +I+  +Q   S  AL  F  M       +  TF + ++SC+       G+QIH
Sbjct: 304 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 363

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++K+  +  + V + L+ MY++ G + ++  VF      D    +A+IS Y   G  +
Sbjct: 364 GQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 423

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALS 271
           +AIELF+++   G   + VT+ ++L A S
Sbjct: 424 KAIELFKQMMNGGAEPSDVTFLALLYACS 452



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G+      + + +++C +   L  GQ++H  ++K      V + T L+  Y++C C
Sbjct: 331 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 390

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++F      +    +AMISAY    H  +A+ LF +M+    EP++ TF  +L +
Sbjct: 391 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 450

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   E G     L+ K+   +  +   + ++D+  ++G + EA  +   +P
Sbjct: 451 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP 504



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 244 AIELFRKLQ----VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
           A+   R+L       G  ++  T   ++ A + L  L   +++   + R  + S+    N
Sbjct: 122 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSW----N 177

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L   Y K G L  +R++FD M ER V +WNAM+ G +  G   E +  F  MR E  + 
Sbjct: 178 ILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREG-MH 236

Query: 360 PDSVTYLAVLSGCSHGGMED 379
           PD     +V   C+  G+ D
Sbjct: 237 PDEFGLGSVFRCCA--GLRD 254


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/590 (37%), Positives = 348/590 (58%), Gaps = 16/590 (2%)

Query: 52  LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           L  ++  +E  +LL  C N    +   + HA ++K       +  + L+     C  LSD
Sbjct: 25  LSFKLGEKECVSLLKKCSNMEEFK---QSHARILKLGLFGDSFCASNLVA---TC-ALSD 77

Query: 112 ------ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
                 A  +F +M E     +  M+  + +  ++ EAL  +  M     +P+ FT+ T+
Sbjct: 78  WGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTL 137

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +CA     E G Q+H+ I+K   E+ ++V +SL+ MY K G I     VFE + ER V
Sbjct: 138 LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHS 284
            S +A+I+ +A LG+  + + L   +  EG   +      SVL+A + L AL  G+ VH 
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            +LR      V+++ SLI+MY KCGSL     +F  M+++  +S++ M+ G + HG GRE
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + +F  M E+  ++PD + Y+ VL+ CSH G+   GL  F+ +   + G EP I+HYGC
Sbjct: 318 GLRIFTEMLEQG-LEPDDIVYVGVLNACSHAGLVQEGLQCFNRM-KLEHGIEPTIQHYGC 375

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
           +VD++GRAG++ EALE IK+MP EP   +  SLL A +VH N+  GE   ++L +++ + 
Sbjct: 376 MVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQK 435

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           A +YV+LSN+YA A RWEDV + R  M  K +++ PG S +E+ + +H F + D  HP  
Sbjct: 436 ASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQS 495

Query: 525 EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           E +   + Q+  + K  GY PD + VL DVDEE+K++ L GHS+KLA+ + LI T +G+P
Sbjct: 496 ESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSP 555

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IR+++NLR+C DCH + K +S ++ R++++RD++RFHH  +G CSC DYW
Sbjct: 556 IRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EMA  G++     Y TLL AC     +  G +VHAH++K      V+++  LI  Y KC 
Sbjct: 121 EMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCG 180

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
            +     +F++M ER+V SW+A+I+A++      + L L   M         E    +VL
Sbjct: 181 EIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVL 240

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++C      +LG+ +H  ++++    ++ V +SL++MY K G +++   +F+ + +++ +
Sbjct: 241 SACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKL 300

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S + +ISG A  G   E + +F ++  +G+  + + Y  VL A S    +  G Q  + +
Sbjct: 301 SYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRM 360

Query: 287 -LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
            L   I   +     ++D+  + G +  +  +  +M  E   + W ++L     H
Sbjct: 361 KLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 415


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/527 (42%), Positives = 316/527 (59%), Gaps = 39/527 (7%)

Query: 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
           L  + RM       + FT   VL SCA      +G+ +H   ++   E   YVG+SL+DM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 204 YAKAGRIHEAR-------------------------------GVFECLPERDVVSCTAII 232
           Y K G I +AR                                +FE +  R++VS TA+I
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 233 SGYAQLGLDEEAIELFRKLQVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           SGY Q G  E+A+ LF ++  +G  M  N+VT  SVL A +  AAL  G+++H       
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVEL 348
           +     +Q +L  MY+KC SL  +R  FD +++  + +I+WN M+  Y+ HG G E V +
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 349 F-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           F N++R    V+PD+VT++ +LSGCSH G+ D GL  F+++       EP +EHY CVVD
Sbjct: 332 FENMLRA--GVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS-VEPRVEHYACVVD 388

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAGR+ EA E I  MP +   ++ G+LL ACR H N++I E   +RL  +EP+N+GN
Sbjct: 389 LLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGN 448

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSNLYA AG WE+V ++R L+K + + K PG SWIE++   H F  +D+SHP  +E+
Sbjct: 449 YVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEI 508

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              ++ L  K K AGY+PD S VL+D+ EE+KE  L  HSEKLA+ FGL+ T  G  +RV
Sbjct: 509 YKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRV 568

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLRIC DCH   KF+SK+Y R++ +RD NRFH   +G+CSCGDYW
Sbjct: 569 TKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 48/348 (13%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM---- 119
           +L +C +   +  G+ VH   ++       Y+   LI  Y KC  + DARK+FD+M    
Sbjct: 113 VLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 172

Query: 120 ---------------------------RERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                                        RN+VSWTAMIS Y+Q   + +AL LF  ML+
Sbjct: 173 MASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 232

Query: 153 --SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
             S+ +PN  T  +VL +CA +   E G++IH          +  V ++L  MYAK   +
Sbjct: 233 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 292

Query: 211 HEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            EAR  F+ + +  +++++   +I+ YA  G   EA+ +F  +   G+  + VT+  +L+
Sbjct: 293 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 352

Query: 269 AL--SGL--AALGHGKQVHS-HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
               SGL  A L H   + + H +   +  Y      ++D+  + G L  ++ +   M  
Sbjct: 353 GCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYAC----VVDLLGRAGRLVEAKELISQMPM 408

Query: 324 RTVIS-WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +   S W A+L     H    E+ EL    R    ++PD+     +LS
Sbjct: 409 QAGPSVWGALLAACRSH-RNLEIAEL--AARRLFVLEPDNSGNYVLLS 453



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 17/185 (9%)

Query: 48  EMATLGLEMR--FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           EM   G EM+  +    ++L AC     L  G+R+H             ++T L   Y K
Sbjct: 229 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 288

Query: 106 CECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           C  L +AR  FD + +  +N+++W  MI+AY+      EA+++F  MLR+  +P+  TF 
Sbjct: 289 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 348

Query: 164 TVLTSC-------AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            +L+ C       AG   F     IHS+      E  +   + ++D+  +AGR+ EA+ +
Sbjct: 349 GLLSGCSHSGLIDAGLNHFNDMGTIHSV------EPRVEHYACVVDLLGRAGRLVEAKEL 402

Query: 217 FECLP 221
              +P
Sbjct: 403 ISQMP 407


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/603 (37%), Positives = 345/603 (57%), Gaps = 44/603 (7%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           N ++     ++HA +++        L  +L   Y     L  +  +F      NV  WT 
Sbjct: 32  NSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTH 91

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I+A++       AL+ + +ML    +PN FT +++L +C         + +HS  IK  
Sbjct: 92  IINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFG 147

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI------------------ 231
             SH+YV + L+D YA+ G +  A+ +F+ +PER +VS TA+                  
Sbjct: 148 LSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFE 207

Query: 232 -------------ISGYAQLGLDEEAIELFRKLQVEGMIS-------NYVTYASVLTALS 271
                        I GYAQ G   EA+  FRK+ +    +       N +T  +VL++  
Sbjct: 208 GMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCG 267

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            + AL  GK VHS+V    I   V +  +L+DMY KCGSL  +R+VFD M  + V++WN+
Sbjct: 268 QVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNS 327

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M++GY  HG   E ++LF+ M     VKP  +T++AVL+ C+H G+  +G  VF  + D 
Sbjct: 328 MIMGYGIHGFSDEALQLFHEMCCIG-VKPSDITFVAVLTACAHAGLVSKGWEVFDSMKD- 385

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G EP++EHYGC+V++LGRAGR+ EA + +++M  EP   + G+LL ACR+H NV +GE
Sbjct: 386 GYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGE 445

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            + + L+     ++G YV+LSN+YA+A  W  V +VR +MK   V K+PG S IE+   +
Sbjct: 446 EIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRV 505

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A DR HP  +++ + +++++   KE  Y P    VL+D+ E++KE+ L  HSEKLA
Sbjct: 506 HEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLA 565

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           L FGLI T  GA I+++KNLR+C+DCH   K +SK+ GRK+ +RD+NRFHH   G+CSC 
Sbjct: 566 LAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCR 625

Query: 632 DYW 634
           DYW
Sbjct: 626 DYW 628


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 336/573 (58%), Gaps = 24/573 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMRE 121
           LL  C N   LR   ++H  M+KT         ++L+ F        L+ AR +FD +  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            N   W  MI  YS      EAL L+  ML      N +TF  +L +C+     E  +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ IIK  F S IY  +SLL++Y+K+G I  AR +F+ + +RD                 
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT---------------- 184

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EA+ LF ++Q  G+  + V   S L A + L  L  GK +H+++ + EI    +L   L
Sbjct: 185 -EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVL 243

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           IDMY+KCG L  +  VF  M E+ V  W AM+ GY+ HG GRE +E F  M+    V+P+
Sbjct: 244 IDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAG-VEPN 302

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+  +L+ CSH G+      +F E ++   GF+P IEHYGC+VD+LGRAG + EA E 
Sbjct: 303 QMTFTGILTACSHAGLVHEAKLLF-ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEEL 361

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I+NMP +P AAI G+LL AC +H N+++G+ +G+ L++++P + G Y+ L++++A+AG W
Sbjct: 362 IENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEW 421

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
               RVR  MKE+ V+K PG S I ++   H F A D SHP  +E+   ++Q+  + +E 
Sbjct: 422 NQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREE 481

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY P +  +L D+++++KE  +  HSEKLA+TFGLI T  G  IR++KNLR+C DCH   
Sbjct: 482 GYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVI 541

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +SKVY R++ +RD+ RFH   +G C+CGDYW
Sbjct: 542 KLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M T G+++      + L AC +   L  G+ +HA++ K        L   LI  Y KC  
Sbjct: 193 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 252

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L +A ++F +M E+ V  WTAMIS Y+      EAL  F++M  +  EPN+ TF  +LT+
Sbjct: 253 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTA 312

Query: 169 CAGA-------FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ A         FE  ++IH       F+  I     ++D+  +AG + EA  + E +P
Sbjct: 313 CSHAGLVHEAKLLFESMERIH------GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMP 366


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/633 (38%), Positives = 352/633 (55%), Gaps = 53/633 (8%)

Query: 11  FSSLTFTQQQLTVPSFPPNPQN------LKTLCSNGQLTKALI---EMATLGLEMRFEEY 61
           FS+L F    L V  + PNP        +K    N +  KA+    +M           Y
Sbjct: 77  FSNLNFA---LKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTY 133

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            TL  AC        G +VHAH+IK      V++R+  I  Y     +  AR+M  E   
Sbjct: 134 PTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGN 193

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            +V+ + AMI  Y +      A  LF  M     + N  ++  +++              
Sbjct: 194 SDVICFNAMIDGYLKCGEVEAAKELFWSM----EDKNVGSWNVMVSG------------- 236

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
                                  AK G I EAR +F  + E++ +S +A+I GY + G  
Sbjct: 237 ----------------------MAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYY 274

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +EA+E+F  +Q E +       +SVL A + L AL  G+ +H++V         VL  +L
Sbjct: 275 KEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTAL 334

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           +DMY+KCG L  +  VF+ M ++ V +WNAM+ G   HG   + +ELF  M+++ K +P+
Sbjct: 335 VDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQ-KFRPN 393

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T L VLS C+H GM D GL +F+ + +   G EP +EHYGCVVD+LGRAG +GEA E 
Sbjct: 394 GITLLGVLSACAHSGMVDEGLRIFNSMEEVY-GIEPGMEHYGCVVDLLGRAGLLGEAEEV 452

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           + +MP EP+AA+ G+LLGACR H +V++GE VG+ L+E+EP+N+G Y +LSN+YA AGRW
Sbjct: 453 MYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRW 512

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           +DV  VR+LMKE+ V    G S I+ D ++H F   D SHP  + +   +K +  + K  
Sbjct: 513 DDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKME 572

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           G+ P+ S VL+D++EE+KE  L  HSEKLA+ FGLI T  G  I V+KNLR+C DCH+  
Sbjct: 573 GFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAF 632

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +S+VY R++ +RD+ R+HH   GTCSC D+W
Sbjct: 633 KLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/536 (39%), Positives = 327/536 (61%), Gaps = 6/536 (1%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y KC    D RK+FDEM  +++V WTAMI+AY Q     EAL LF +M + +    +  
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 162 FATVLTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
               + S  G  G  +    +H    + +    + VG+S+L M+ K G   +AR VF+ +
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            ERDV+S  +++SGY Q G   EA+ LF +++        VT   +++A + L     G+
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSK 338
           + H  ++   +     L N+L+DMY+KCG L  +  +F+ +  +ER   SWN ++ GY  
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G+E +ELF+ M+EE  V+P+  T+ ++LS CSH G+ D G   F E+       E +
Sbjct: 241 HGHGKEALELFSRMQEEG-VEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDK 299

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
             H+ CVVDMLGRAG + EA + IK MP  P+  + G+LL AC++H N+++G+     L+
Sbjct: 300 --HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           ++EP + G YV++SN+YA++ +W++V ++R+ MK K + K    S IE  + +  FH +D
Sbjct: 358 QLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD 417

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
           + +P R E+  K++ L+++ K AGYVPD+SC L+DV+EE KE++L  HSEKLA+ FG++ 
Sbjct: 418 QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLK 477

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              G  IRV KNLR+C DCH+  K++S +Y RK+ +RD NRFHH   GTCSC DYW
Sbjct: 478 IDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 14/304 (4%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           ++    VH +  +      + +   ++  + KC     AR +FD M ER+V+SW +M+S 
Sbjct: 75  VKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSG 134

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFES 192
           Y+Q   + EAL LF  M  SD +P   T   ++++CA   GF  LG++ H  I+ S  E 
Sbjct: 135 YTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACA-YLGFRHLGRKFHDFIVDSRMEI 193

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRK 250
              + ++L+DMYAK G + +A  +F  +P  ER+  S   +ISGY   G  +EA+ELF +
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSR 253

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +Q EG+  N+ T+ S+L+A S    +  G++  + + R  +         ++DM  + G 
Sbjct: 254 MQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGL 313

Query: 311 LTYSRRVFDNM-SERTVISWNAMLVGYSKHG---MGREVVELFNLMREENKVKPDSVTYL 366
           L  +  +   M S  +   W A+L+    HG   +G+      NL++    ++P+   Y 
Sbjct: 314 LQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAAS--NLLQ----LEPNHTGYY 367

Query: 367 AVLS 370
            ++S
Sbjct: 368 VLMS 371


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 350/581 (60%), Gaps = 20/581 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL +C          ++HAH+I+T  +P  Y R+ LI  Y KC     ARK+FDEM    
Sbjct: 60  LLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEM-PNP 118

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRS-------DTEPNEFTFATVLTSCAGAFGFE 176
            + + AMIS YS  +    A+ LF +M R        D   N  T  ++++ C+ A    
Sbjct: 119 TICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLT 178

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           +G  +H   ++  F + + V +SL+ MY K G +  AR VF+ +  RD+++  A+ISGYA
Sbjct: 179 IGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYA 238

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q G     +E++ ++++ G+ ++ VT   V++A + L A G G++V   + R        
Sbjct: 239 QNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPF 298

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L+N+L++MY++CG+LT +R VFD   E++V+SW A++ GY  HG G   +ELF+ M  E+
Sbjct: 299 LRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEM-VES 357

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V+PD   +++VLS CSH G+ DRGL  F E+ + K G +P  EHY CVVD+LGRAGR+ 
Sbjct: 358 AVRPDKTVFVSVLSACSHAGLTDRGLEYFKEM-ERKYGLQPGPEHYSCVVDLLGRAGRLE 416

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA+  IK+M  +P  A+ G+LLGAC++H N +I E   Q ++E+EP N G YV+LSN+Y 
Sbjct: 417 EAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYT 476

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
            A   E V+RVR +M+E+ + KDPG S++E    ++ F++ D SHP  +++   + +L  
Sbjct: 477 DANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELES 536

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLG---HSEKLALTFGLIGTPEGAPIRVIKNLRI 593
             KE  + P+  C      + + E++L+G   HSEKLA+ F L+ T  G  I V+KNLR+
Sbjct: 537 LVKEV-HPPNEKC------QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRV 589

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CVDCH F K VSK+  R+  +RD  RFHH  +G CSC DYW
Sbjct: 590 CVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICSCKDYW 630



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 160/308 (51%), Gaps = 11/308 (3%)

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R     +W   +   S++    EAL L+  MLRS   PN FTF  +L SCA         
Sbjct: 15  RWNPTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAAS 74

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H+ +I++  +   Y  SSL++ YAK    H AR VF+ +P    +   A+ISGY+   
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNS 133

Query: 240 LDEEAIELFRKLQVE-------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
               A+ LFRK++ E        +  N VT  S+++  S    L  G  +H   +RF   
Sbjct: 134 KPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFV 193

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + + + NSL+ MY KCG +  +R+VFD M  R +I+WNAM+ GY+++G  R V+E+++ M
Sbjct: 194 TDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEM 253

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           +    V  D+VT L V+S C++ G +  G  V  EI     G  P + +   +V+M  R 
Sbjct: 254 KLSG-VSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARC 310

Query: 413 GRVGEALE 420
           G +  A E
Sbjct: 311 GNLTRARE 318



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 168/363 (46%), Gaps = 26/363 (7%)

Query: 28  PNPQNLKTLCSNGQLT-----KALIEMATLGLEMRFEEYD--------------TLLNAC 68
           PNP    T+C N  ++        +    L  +MR EE D              +L++ C
Sbjct: 116 PNP----TICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGC 171

Query: 69  VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
                L  G  +H   ++  +   + +   L+  Y KC  +  ARK+FDEM  R++++W 
Sbjct: 172 SVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWN 231

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           AMIS Y+Q  H+   L ++  M  S    +  T   V+++CA      +G+++   I + 
Sbjct: 232 AMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERR 291

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
            F  + ++ ++L++MYA+ G +  AR VF+   E+ VVS TAII GY   G  E A+ELF
Sbjct: 292 GFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELF 351

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSK 307
            ++    +  +   + SVL+A S       G +    + R + +       + ++D+  +
Sbjct: 352 DEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGR 411

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            G L  +  +  +M  +   +    L+G  K     E+ EL    +   +++P ++ Y  
Sbjct: 412 AGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAEL--AFQHVVELEPTNIGYYV 469

Query: 368 VLS 370
           +LS
Sbjct: 470 LLS 472


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 341/570 (59%), Gaps = 17/570 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  ++ AC        G  VH H++K+ +    Y+   LI  Y   + L  A+++F    
Sbjct: 3   YPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCS 62

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R+VVSW AMI  Y ++        +F RM+  D      ++ T++   A     +  K+
Sbjct: 63  DRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKR 118

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +   + + N  S     +S+L  + K G + EA G+F  +P RDVVS  ++++ YAQ G 
Sbjct: 119 LFDEMPERNLVS----WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGK 174

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ LF +++  G+     T  S+L+A + L AL  G  +H+++    I    ++  +
Sbjct: 175 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 234

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+KCG ++ + +VF+ M  + V++WN ++ G + HG  +E  +LF  M+E + V+P
Sbjct: 235 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS-VEP 293

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---GFEPEIEHYGCVVDMLGRAGRVGE 417
           + +T++A+LS CSH GM D G     +++DC     G EP++EHY CV+D+L RAG + E
Sbjct: 294 NDITFVAMLSACSHAGMVDEG----QKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEE 349

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A+E I  MP EP  + LG+LLG CR+H N ++GE VG+RL+ ++P ++G Y++LSN+YA+
Sbjct: 350 AMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAA 409

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           A +W+D  +VR LMK   ++K PG S IEL  ++H F A D SHP   ++  K+ ++  +
Sbjct: 410 AKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTR 469

Query: 538 FKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
            K A GY  D   VL D++EE KE  L  HSEKLA+ +GL+       IR++KNLR+C D
Sbjct: 470 LKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRD 529

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           CH+  K +SKVYGR++ +RD+NRFHH  +G
Sbjct: 530 CHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 153/315 (48%), Gaps = 14/315 (4%)

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            T+  V+ +C  +     G  +H+ ++KS FE   Y+ +SL+ +YA    +  A+ +F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
             +RDVVS  A+I GY + G       +F ++    +IS    + +++   + +  +   
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVIS----WNTIINGYAIVGKIDEA 116

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K++   +    + S+    NS++  + KCG++  +  +F  M  R V+SWN+ML  Y++ 
Sbjct: 117 KRLFDEMPERNLVSW----NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G   E + LF+ MR    VKP   T +++LS C+H G  D+GL +   I D +   E   
Sbjct: 173 GKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR--IEVNS 229

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
                +VDM  + G++  A +    M  +   A   +++    +H +V   + + + + E
Sbjct: 230 IVGTALVDMYAKCGKISLATQVFNAMESKDVLA-WNTIIAGMAIHGHVKEAQQLFKEMKE 288

Query: 460 --IEPENAGNYVILS 472
             +EP +     +LS
Sbjct: 289 ASVEPNDITFVAMLS 303


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/587 (37%), Positives = 339/587 (57%), Gaps = 36/587 (6%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M + G       Y  +L AC     LR G ++H  + K      +++   LI  Y KC 
Sbjct: 123 DMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCG 182

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           CL +AR + DEM+ ++VVSW +M++ Y+Q     +AL++   M     +P+  T A++L 
Sbjct: 183 CLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +                +  ++ E+ +YV                   +F  L ++ +VS
Sbjct: 243 A----------------VTNTSSENVLYV-----------------EEMFMNLEKKSLVS 269

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +IS Y +  +  ++++L+ ++    +  + +T ASVL A   L+AL  G+++H +V 
Sbjct: 270 WNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVE 329

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R ++   ++L+NSLIDMY++CG L  ++RVFD M  R V SW +++  Y   G G   V 
Sbjct: 330 RKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVA 389

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M+   +  PDS+ ++A+LS CSH G+ + G   F ++ D      P IEH+ C+VD
Sbjct: 390 LFTEMQNSGQ-SPDSIAFVAILSACSHSGLLNEGKFYFKQMTD-DYKITPIIEHFACLVD 447

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGR+GRV EA   IK MP +P   + G+LL +CRV+ N+DIG     +L+++ PE +G 
Sbjct: 448 LLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGY 507

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN+YA AGRW +VT +R LMK + + K PG S +EL+  +HTF A D  HP  +E+
Sbjct: 508 YVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEI 567

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             ++  L  K KE GYVP     L+DV+EE KE  L  HSEKLA+ F ++ T E +PIR+
Sbjct: 568 YEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRI 626

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCH  AK +SK+  R++ +RD NRFHH  +G CSCGDYW
Sbjct: 627 TKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 157/321 (48%), Gaps = 36/321 (11%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           AR +FD + ERNV+ +  MI +Y       +AL +F  M+     P+ +T+  VL +C+ 
Sbjct: 86  ARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSC 145

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
           +    +G Q+H  + K   + +++VG+ L+ +Y K G + EAR V + +  +DVVS  ++
Sbjct: 146 SDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSM 205

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++GYAQ    ++A+++ R++       +  T AS+L A++  ++                
Sbjct: 206 VAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSS---------------- 249

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
                 +N L           Y   +F N+ +++++SWN M+  Y K+ M  + V+L+ L
Sbjct: 250 ------ENVL-----------YVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLY-L 291

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
              + +V+PD++T  +VL  C        G  + HE V+ +    P +     ++DM  R
Sbjct: 292 QMGKCEVEPDAITCASVLRACGDLSALLLGRRI-HEYVE-RKKLCPNMLLENSLIDMYAR 349

Query: 412 AGRVGEALEFIKNMPFEPTAA 432
            G + +A      M F   A+
Sbjct: 350 CGCLEDAKRVFDRMKFRDVAS 370



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 36/344 (10%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           K +HS +   +F  +  +G  L+  YA  G    AR VF+ +PER+V+    +I  Y   
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            L ++A+ +FR +   G   ++ TY  VL A S    L  G Q+H  V +  +   + + 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N LI +Y KCG L  +R V D M  + V+SWN+M+ GY+++    +  +  ++ RE + V
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQN---MQFDDALDICREMDGV 228

Query: 359 --KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
             KPD+ T  ++L   ++   E+  L V    ++ +   +  +  +  ++ +  +    G
Sbjct: 229 RQKPDACTMASLLPAVTNTSSENV-LYVEEMFMNLE---KKSLVSWNVMISVYMKNSMPG 284

Query: 417 EALEFIKNM---PFEPTAAILGSLLGAC----------RVHYNVDIGEFVGQRLMEIEPE 463
           ++++    M     EP A    S+L AC          R+H  V+  +     L+E    
Sbjct: 285 KSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLE---- 340

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
              N +I  ++YA  G  ED  RV + MK + V      SW  L
Sbjct: 341 ---NSLI--DMYARCGCLEDAKRVFDRMKFRDVA-----SWTSL 374


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/541 (40%), Positives = 326/541 (60%), Gaps = 38/541 (7%)

Query: 130 MISAYSQ-KAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           MI A++     S  ++ +F+ M+R S   PN +TF  V  +C    G   G+QI    IK
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 60

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFEC---------------------------- 219
              ES+++V ++++ MYA  G + EAR VF+                             
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 220 ---LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
              + ERDVVS T II+GY Q+G  +EA++LF ++   G   N  T AS L A + L AL
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLV 334
             G+ +H ++ + EI     L  SL+DMY+KCG + ++ +VF +    +  V  WNAM+ 
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 240

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY+ HG  +E ++LF  M+ E KV P+ VT++A+L+ CSHG + + G   F  +     G
Sbjct: 241 GYAMHGKSKEAIDLFEQMKVE-KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSY-G 298

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            EPEIEHYGC+VD+LGR+G + EA E + NMP  P A I G+LLGACR+H +++ G+ +G
Sbjct: 299 IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIG 358

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + + E++ ++ G +V+L+NLY+++G+W++   VR+ ++     K PG S IEL+ + H F
Sbjct: 359 KIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQF 418

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV-DEEQKEKVLLGHSEKLALT 573
              DRSHP  ++L   + +++ K K AGYVP+   VL D+ DEE KE  L  HSEKLA+ 
Sbjct: 419 LVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIA 478

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FGLI TP G  IR++KNLR+C DCH   KF+SKVY R++ +RD+ R+HH  +G CSC DY
Sbjct: 479 FGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDY 538

Query: 634 W 634
           W
Sbjct: 539 W 539



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 143/315 (45%), Gaps = 55/315 (17%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK--------- 114
           +  AC N   +  G+++  H IK      +++   +I  Y     + +AR+         
Sbjct: 38  VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 97

Query: 115 ----------------------MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                                 MFDEM ER+VVSWT +I+ Y Q     EAL+LF  ML+
Sbjct: 98  LYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ 157

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           +   PNEFT A+ L +CA     + G+ IH  I KS  + +  + +SLLDMYAK G I  
Sbjct: 158 TGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDF 217

Query: 213 ARGVF--ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
           A  VF  E   +  V    A+I GYA  G  +EAI+LF +++VE +  N VT+ ++L A 
Sbjct: 218 AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 277

Query: 271 SGLAALGHGKQVH-----------SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           S      HGK V            S+ +  EI  Y      ++D+  + G L  +     
Sbjct: 278 S------HGKLVEEGRGYFKSMASSYGIEPEIEHY----GCMVDLLGRSGLLKEAEETVF 327

Query: 320 NMS-ERTVISWNAML 333
           NM        W A+L
Sbjct: 328 NMPMAPDATIWGALL 342


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 343/568 (60%), Gaps = 7/568 (1%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMI 131
           + L      H++++K+      +    LI  Y +   +  A+K+FDEM  RNVVSWT+++
Sbjct: 38  KDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLM 97

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191
           + Y  +     AL LF +M  +   PNEFTFAT++ +C+     E+G++IH+L+  S   
Sbjct: 98  AGYVSQGQPNMALCLFHQMQGTLVLPNEFTFATLINACSILANLEIGRRIHALVEVSGLG 157

Query: 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
           S++   SSL+DMY K   + EAR +F+ +  R+VVS T++I+ Y+Q      A++LF++ 
Sbjct: 158 SNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEF 217

Query: 252 QVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
               +   N+    S ++A + L +LG GK  H  V+R    +  V+ ++L+DMY+KCG 
Sbjct: 218 NHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGC 277

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           + YS ++F  +   +VI + +M+VG +K+G+G   ++LF  M    ++KP+ +T++ VL 
Sbjct: 278 VNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVR-RIKPNDITFVGVLH 336

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+ D+GL +  + +D K G  P+ +HY C+ DMLGR GR+ EA +  K++  E  
Sbjct: 337 ACSHSGLVDKGLELL-DSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGD 395

Query: 431 --AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
             A + G+LL A R++  VDI      RL+E   + AG YV LSN YA AG WE+   +R
Sbjct: 396 GYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAHNLR 455

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRS-HPMREELSAKVKQLSVKFKEAGYVPDM 547
             MK   V K+PG SWIE+ +  + FHA D S +    E+ + +++L  + K  GYV   
Sbjct: 456 SEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYVGGT 515

Query: 548 SCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSK 606
             +++ DV+EE KE+++  HSEKLAL FGLI TP+G  IR++KNLR+C DCH   K +S 
Sbjct: 516 KGLVFVDVEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCHGAFKLISD 575

Query: 607 VYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +  R++ +RD NRFHH   G C+CGD+W
Sbjct: 576 IVERELVVRDVNRFHHFKNGLCTCGDFW 603



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 50  ATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL 109
            TL L   F  + TL+NAC     L  G+R+HA +  +     +   + LI  Y KC  +
Sbjct: 118 GTLVLPNEFT-FATLINACSILANLEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHV 176

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTS 168
            +AR +FD M  RNVVSWT+MI+ YSQ A    AL LF     S  + PN F   + +++
Sbjct: 177 DEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSA 236

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA       GK  H ++I+   E+   + S+L+DMYAK G ++ +  +F  +    V+  
Sbjct: 237 CASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPY 296

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           T++I G A+ GL   +++LF+++ V  +  N +T+  VL A S
Sbjct: 297 TSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACS 339



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 30/191 (15%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           ++AC +  +L  G+  H  +I+  +     + + L+  Y KC C++ + K+F  ++  +V
Sbjct: 234 VSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSV 293

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           + +T+MI   ++      +L LF  M+    +PN+ TF  VL +C+           HS 
Sbjct: 294 IPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACS-----------HSG 342

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           ++    E        LLD            G +   P+    +C A + G  ++G  EEA
Sbjct: 343 LVDKGLE--------LLD---------SMDGKYGVTPDAKHYTCIADMLG--RVGRIEEA 383

Query: 245 IELFRKLQVEG 255
            +L + +QVEG
Sbjct: 384 YQLAKSVQVEG 394



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T A  +  L     L      HS+V++  + +     N LI+ Y +  ++ +++++FD M
Sbjct: 26  TKAHFVAKLQTCKDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEM 85

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             R V+SW +++ GY   G     + LF+ M +   V P+  T+  +++ CS     + G
Sbjct: 86  PHRNVVSWTSLMAGYVSQGQPNMALCLFHQM-QGTLVLPNEFTFATLINACSILANLEIG 144

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             + H +V+   G    +     ++DM G+   V EA     +M
Sbjct: 145 RRI-HALVEVS-GLGSNLVACSSLIDMYGKCNHVDEARLIFDSM 186


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 325/567 (57%), Gaps = 56/567 (9%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++AC N   LR G+ +H + IK       + +   L+ +Y KC  +  AR+ F  +++ +
Sbjct: 369 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 428

Query: 124 VVSWTAMISAYSQKAHSFEALNL-----------------------------------FI 148
           +VSW AM++ Y+ +    EA+ L                                   F 
Sbjct: 429 LVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ 488

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RM     +PN  T +  L +C      +LGK+IH  +++++ E    VGS+L+ MY+   
Sbjct: 489 RMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCD 548

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  A  VF  L  RDVV   +IIS  AQ G    A++L R++ +  +  N VT  S L 
Sbjct: 549 SLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A S LAAL  GK++H  ++R  + +   + NSLIDMY +CGS+  SRR+FD M +R ++S
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WN M+  Y  HG G + V LF   R    +KP+ +T+  +LS CSH G+ + G   F ++
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQXFRTMG-LKPNHITFTNLLSACSHSGLIEEGWKYF-KM 726

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           +  +   +P +E Y C+VD+L RAG+  E LEFI+ MPFEP AA+ GSLLGACR+H N D
Sbjct: 727 MKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPD 786

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E+  + L E+EP+++GNYV+++N+Y++AGRWED  ++R LMKE+ VTK PG SWIE+ 
Sbjct: 787 LAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 846

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
           + LH+F   D SHP+ E++S K  +L                  DVDE++KE  L GHSE
Sbjct: 847 RKLHSFVVGDTSHPLMEQISGKDGKL------------------DVDEDEKEFSLCGHSE 888

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICV 595
           K+AL FGLI T  G P+R+IKNLR+ V
Sbjct: 889 KIALAFGLISTTXGTPLRIIKNLRVSV 915



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 76/425 (17%)

Query: 39  NGQLTKALIEMATLGL---EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG L  A + ++++ L   +   E Y ++L  C     LR G +VHA ++        +L
Sbjct: 67  NGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFL 126

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            +RL+  Y +  C+ DAR+MFD+M ERNV SWTA++  Y       E + LF  M+    
Sbjct: 127 GSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV 186

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+ F F  V  +C+    + +GK ++  ++   FE +  V  S+LDM+ K GR+  AR 
Sbjct: 187 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 246

Query: 216 VFECLPERDV-----------------------------------VSCTAIISGYAQLGL 240
            FE +  +DV                                   V+  AIISGYAQ G 
Sbjct: 247 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ 306

Query: 241 DEE------------------------------------AIELFRKLQVEGMISNYVTYA 264
            EE                                    A+ +FRK+ +EG+  N +T A
Sbjct: 307 FEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIA 366

Query: 265 SVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           S ++A + L+ L HG+++H + ++  E+ S +++ NSL+D Y+KC S+  +RR F  + +
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ 426

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
             ++SWNAML GY+  G   E +EL + M+ +  ++PD +T+  +++G +  G     L 
Sbjct: 427 TDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG-IEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 384 VFHEI 388
            F  +
Sbjct: 486 FFQRM 490



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 204/442 (46%), Gaps = 57/442 (12%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEE---------YDTLLNACVNQRTLRGGQRVHAHMIKT 87
           C  G +    I+   + +  RF E         ++ +++   ++   +   +  + M  +
Sbjct: 226 CVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLS 285

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-----ERNVVSWTAMISAYSQKAHSFE 142
             +P       +I  Y +     +A K F EM      + NVVSWTA+I+   Q  + FE
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLL 201
           AL++F +M+    +PN  T A+ +++C        G++IH   IK    +S + VG+SL+
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           D YAK   +  AR  F  + + D+VS  A+++GYA  G  EEAIEL  +++ +G+  + +
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 262 TYASVLTALS-----------------------------GLAALGH------GKQVHSHV 286
           T+  ++T  +                              LAA G       GK++H +V
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           LR  I     + ++LI MYS C SL  +  VF  +S R V+ WN+++   ++ G     V
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG---RSV 582

Query: 347 ELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
              +L+RE N   V+ ++VT ++ L  CS      +G  +   I+ C  G +        
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC--GLDTCNFILNS 640

Query: 405 VVDMLGRAGRVGEALEFIKNMP 426
           ++DM GR G + ++      MP
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMP 662



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 153/292 (52%), Gaps = 7/292 (2%)

Query: 155 TEPNEFT--FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           T P+E    +A++L  C   +   LG Q+H+ ++ +  +   ++GS LL++Y + G + +
Sbjct: 83  TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR +F+ + ER+V S TAI+  Y  LG  EE I+LF  +  EG+  ++  +  V  A S 
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L     GK V+ ++L         ++ S++DM+ KCG +  +RR F+ +  + V  WN M
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY+  G  ++ ++  + M+    VKPD VT+ A++SG +  G  +     F E+   K
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSG-VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLK 321

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE---PTAAILGSLLGAC 441
           D F+P +  +  ++    + G   EAL   + M  E   P +  + S + AC
Sbjct: 322 D-FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 144/287 (50%), Gaps = 2/287 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G++         L AC   R L+ G+ +H ++++        + + LI  Y+ C+ 
Sbjct: 490 MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDS 549

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  A  +F E+  R+VV W ++ISA +Q   S  AL+L   M  S+ E N  T  + L +
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           C+       GK+IH  II+   ++  ++ +SL+DMY + G I ++R +F+ +P+RD+VS 
Sbjct: 610 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 669

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVL 287
             +IS Y   G   +A+ LF+  +  G+  N++T+ ++L+A S    +  G K       
Sbjct: 670 NVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 729

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
            + +   V     ++D+ S+ G    +    + M  E     W ++L
Sbjct: 730 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 1/177 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L EM    +E+      + L AC     LR G+ +H  +I+       ++   LI  Y +
Sbjct: 588 LREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGR 647

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +  +R++FD M +R++VSW  MIS Y       +A+NLF        +PN  TF  +
Sbjct: 648 CGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNL 707

Query: 166 LTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L++C+ +   E G K    +  +   +  +   + ++D+ ++AG+ +E     E +P
Sbjct: 708 LSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 328/521 (62%), Gaps = 7/521 (1%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN--EFTFATVLTSC 169
           A  +F  +   N+ +  A + A +Q +H F A+  F   + S   PN  EFTF +VL +C
Sbjct: 43  AALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKAC 102

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE--CLPERDVVS 227
           AG      G++IH+++ K  FES+++V +SL+DMY KAG +  AR +F+   + +R+VV 
Sbjct: 103 AGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVC 162

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
             A+I+GYAQ     +AIE+FR +Q   G++ N VT  SVL A + L AL  GK +   +
Sbjct: 163 WNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFI 222

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
            R E+   + L N+L DMY+KCG +T +RRVF+ M ER VISW+ ++ G + +G   E  
Sbjct: 223 SRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAF 282

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
             F  M +  + KP+ V ++ +L+ C+H G+  +GL  F+ + D + G  P++EHYGCVV
Sbjct: 283 GCFYEMLDCGE-KPNDVVFMGLLTACTHAGLVKKGLNCFNTM-DKEYGVSPKVEHYGCVV 340

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+L RAG + +A + I +MP +P   I G+LLG CR++ +   G+ V Q ++E++ +++G
Sbjct: 341 DLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSG 400

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
           +YV L+N+Y+S GR +D  + R  M+E  V K PG SWIE+D  +H F   D SHP   +
Sbjct: 401 SYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNK 460

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + + +++L  K K AGY P    V++ +DEE+KE  L  HSEKLA+ FGLI T EG  IR
Sbjct: 461 IYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIR 520

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           V+KNLRIC DCH+ AK +S +  R++ +RD++RFHH  +G 
Sbjct: 521 VVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 170/356 (47%), Gaps = 37/356 (10%)

Query: 1   MRRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEE 60
           ++   + S  F ++ F   Q++ P+  PNP                              
Sbjct: 62  LKALAQNSHWFHAIQFFNHQVSSPN-APNPDEFT-------------------------- 94

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           + ++L AC     +  GQ++HA + K  +   +++R  LI  Y K   L  AR +FDEM 
Sbjct: 95  FTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMF 154

Query: 120 -RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS--DTEPNEFTFATVLTSCAGAFGFE 176
            R+RNVV W AMI+ Y+Q     +A+ +F RM++      PN+ T  +VL +CA     +
Sbjct: 155 VRDRNVVCWNAMIAGYAQNEKYSDAIEVF-RMMQQFGGVVPNDVTLVSVLPACAHLGALD 213

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LGK I   I +      +++G++L DMYAK G I EAR VF  + ERDV+S + II G A
Sbjct: 214 LGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLA 273

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYV 295
             G  +EA   F ++   G   N V +  +LTA +    +  G    + + + + +   V
Sbjct: 274 MYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKV 333

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVG---YSKHGMGREVVE 347
                ++D+ S+ G L  +  +  +M  +  VI W A+L G   Y   G G+ VV+
Sbjct: 334 EHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQ 389



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   L  G+ +   + +      ++L   L   Y KC C+++AR++F++M ER
Sbjct: 201 SVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEER 260

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SW+ +I   +   H+ EA   F  ML    +PN+  F  +LT+C  A   + G    
Sbjct: 261 DVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCF 320

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG---YAQ 237
           + + K       +     ++D+ ++AG + +A  +   +P + +V+   A++ G   Y  
Sbjct: 321 NTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRD 380

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL--AALGHGKQVHSHVLRFEIPSYV 295
            G  +  ++   +L  +    +YV  A+V +++  L  AA    +   + VL+    S++
Sbjct: 381 SGRGQRVVQHILELDSDHS-GSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWI 439

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
            + N++ + +    S   S +++  + E   + W   L GY
Sbjct: 440 EVDNTVHEFFMGDLSHPESNKIYSMIRE---LMWKMKLAGY 477


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/620 (35%), Positives = 350/620 (56%), Gaps = 33/620 (5%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
             EM  +G+E         ++AC   + L  G++V   M +   +    +   L+  Y K
Sbjct: 211 FFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMK 270

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  +   R++FDE  ++N+V +  ++S Y Q   + E L +   ML+    P++ T  + 
Sbjct: 271 CGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLST 330

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL----- 220
           + +CA      +GK  H+ + ++  E    + ++++DMY K G+   A  VF+ +     
Sbjct: 331 IAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTV 390

Query: 221 --------------------------PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
                                     PE ++VS   +I    Q  + EEAI+L R++Q +
Sbjct: 391 VTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQ 450

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  + VT   + +A   L AL   K +++++ + +I   + L  +L+DM+S+CG    +
Sbjct: 451 GIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNA 510

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            RVF+NM +R V +W A +   +  G  +  +ELF+ M +++ VK D   ++A+L+  SH
Sbjct: 511 MRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQD-VKADDFVFVALLTAFSH 569

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GG  D+G  +F  +     G  P+I HYGC+VD+LGRAG + EA + +K+MP +P   I 
Sbjct: 570 GGYVDQGRQLFWAMEKIH-GVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIW 628

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GS L ACR H NV+   +  +++ ++ PE  G +V+LSN+YASAG+W DV RVR  MKEK
Sbjct: 629 GSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEK 688

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
              K  G S IE+  ++  F + D SH    ++   +++++ +  + GYVPD + VL DV
Sbjct: 689 GFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDV 748

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           DE++KE +L  HSEKLA+ +GLI T +G PIRV+KNLR+C DCH+FAK VSK+YGR++++
Sbjct: 749 DEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITV 808

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD NR+H   EG CSC D+W
Sbjct: 809 RDNNRYHFFKEGFCSCRDFW 828



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 195/399 (48%), Gaps = 32/399 (8%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL+AC        G +VH  ++K      +++   LI FY  C  +   RK+FDEM ERN
Sbjct: 128 LLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERN 187

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWT++I+ YS    + EA+ LF  M+    EPN  T    +++CA     ELGK++ +
Sbjct: 188 VVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCN 247

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
           L+ +   +S+  V ++LLDMY K G ++  R +F+   ++++V    I+S Y Q GL  E
Sbjct: 248 LMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGE 307

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
            + +  ++  +G   + VT  S + A + L  L  GK  H++V R  +     + N++ID
Sbjct: 308 VLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIID 367

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV----- 358
           MY KCG    + +VFD+MS +TV++WN+++ G  + G     + +F  M E N V     
Sbjct: 368 MYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTM 427

Query: 359 -------------------------KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
                                    K D VT + + S C + G  D    ++  I   K+
Sbjct: 428 IGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIE--KN 485

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
               +++    +VDM  R G    A+   +NM     +A
Sbjct: 486 DIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSA 524



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 194/375 (51%), Gaps = 14/375 (3%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMF--DEMRERNVVS 126
           +TL   +++H +M+K      V+   +LI   V     E L+ A   F  DE  + ++ +
Sbjct: 33  KTLIELKQLHCNMLK----KGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYT 88

Query: 127 WTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
              +I  Y+      EA+ +++ M+      P+ FTF  +L++C+    F  G Q+H ++
Sbjct: 89  CNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVV 148

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           +K      ++V +SL+  YA  G++   R VF+ + ER+VVS T++I+GY+ + + +EA+
Sbjct: 149 VKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAV 208

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
            LF ++   G+  N VT    ++A + L  L  GK+V + +    + S  ++ N+L+DMY
Sbjct: 209 CLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMY 268

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
            KCG +   R +FD  S++ ++ +N ++  Y +HG+  EV+ + + M ++ + +PD VT 
Sbjct: 269 MKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ-RPDKVTM 327

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           L+ ++ C+  G    G +    +   ++G E        ++DM  + G+   A +   +M
Sbjct: 328 LSTIAACAQLGDLSVGKSSHAYVF--RNGLERLDNISNAIIDMYMKCGKREAACKVFDSM 385

Query: 426 PFEPTAAILGSLLGA 440
               T     SL+  
Sbjct: 386 S-NKTVVTWNSLIAG 399



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 15/352 (4%)

Query: 27  PPNPQNLKTLCSNGQLTKALIEMATLGLEMR--FEEYDTLLNACVNQRTLRGGQRVHAHM 84
           P     L T+ +  QL    +  ++     R   E  D + NA ++     G +     +
Sbjct: 322 PDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKV 381

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
             +     V     LI    +   L  A ++F EM E N+VSW  MI A  Q +   EA+
Sbjct: 382 FDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAI 441

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           +L   M     + +  T   + ++C      +L K I++ I K++    + +G++L+DM+
Sbjct: 442 DLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMF 501

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           ++ G    A  VFE + +RDV + TA I   A  G  + AIELF ++  + + ++   + 
Sbjct: 502 SRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFV 561

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           ++LTA S    +  G+Q+   + +   +   +V    ++D+  + G L      FD M  
Sbjct: 562 ALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLL---EEAFDLMKS 618

Query: 324 RTV----ISWNAMLVGYSKHGMGREVVELFNLMREE-NKVKPDSVTYLAVLS 370
             +    + W + L    KH    + VE  N   E+  ++ P+ V    +LS
Sbjct: 619 MPIKPNDVIWGSFLAACRKH----KNVEFANYADEKITQLAPEKVGIHVLLS 666


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 338/578 (58%), Gaps = 11/578 (1%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           EY  LL AC   R L  G+R+HA ++ T ++  ++L   +++ Y KC  + D  + F EM
Sbjct: 35  EYLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEM 94

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           + RN+VSW A+ISAY+Q   S +A+ +F+RML    +P+  TF +VL + AG       K
Sbjct: 95  KRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAK 154

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H L ++  F SH  V ++LL+MY+K G I  AR VF+ L  +DVVS + +I+ YAQ G
Sbjct: 155 LVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTG 214

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+E+F ++  EG+ +N +T+ +V+ A   +A +   + +H  ++   + S  VL  
Sbjct: 215 HGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGT 274

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L++MY KCG L  ++++FD ++ER V+ W+A+L  Y++HG  R  ++LF LM++E  V+
Sbjct: 275 ALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEG-VR 333

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT++ VL  C HGG    G   F  +V   +   P   H  C++DMLGRAG++ EA 
Sbjct: 334 PNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHE-LRPTAHHVHCMLDMLGRAGKLEEAE 392

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI  MP +  A      LG+CR + +++ G+   +++ E  P     Y+ L+++Y  AG
Sbjct: 393 SFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAG 452

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
             E+   V  LM+ +   K+PG S I +   +H F    + HP  +E+ + +  L  +  
Sbjct: 453 MPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDVLHARAL 512

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP--EGAPIRVIKNLRICVDC 597
           E GYVPD   +L    E +       HSE+LAL FG +  P    +PI +IKNLR+C DC
Sbjct: 513 ELGYVPDTRPLLLGSVERKL------HSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDC 566

Query: 598 HNFAKFVSKVY-GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H F KFVS+   GR++ +RD +RFH   +G CSCGDYW
Sbjct: 567 HEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 8   SRAFSSL---TFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTL 64
           SRAFS +           + ++  N ++   +          + M   G++  +  + ++
Sbjct: 88  SRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIV-------IFLRMLLDGIQPSYVTFTSV 140

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           LNA       R  + VH   ++  +     + T L+  Y+K   +  AR++FDE+  ++V
Sbjct: 141 LNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDV 200

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW+ MI+AY+Q  H  EAL +F RM     + N  TF  V+ +C         + IH  
Sbjct: 201 VSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRR 260

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           II++  ES+  +G++LL+MY K G + EA+ +F+ L ERDVV  +AI+  YA+ G    A
Sbjct: 261 IIEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVA 320

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLID 303
           ++LF  +Q EG+  N VT+  VL A      +  G+   + ++R  E+       + ++D
Sbjct: 321 LKLFTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLD 380

Query: 304 MYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           M  + G L  +      M  +   I+W+  L     +G
Sbjct: 381 MLGRAGKLEEAESFIARMPVKEEAITWSIFLGSCRSYG 418


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 344/586 (58%), Gaps = 10/586 (1%)

Query: 54  LEMRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV--FYNKCECL 109
           L  +F E  + +LL  C   +++   ++VHAH++K       +  + L+     ++   +
Sbjct: 25  LNAKFNEQGWLSLLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSM 81

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
             A  +F ++ E     +  MI          EAL L++ ML    EP+ FT+  VL +C
Sbjct: 82  EYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKAC 141

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           +     + G QIH+ + K+  E  ++V + L+ MY K G I  A  VFE + E+ V S +
Sbjct: 142 SLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWS 201

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           +II  +A + +  E + L   +  EG   +      S L+A + L +   G+ +H  +LR
Sbjct: 202 SIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLR 261

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
                 VV++ SLIDMY KCGSL     VF NM+ +   S+  M+ G + HG GRE V +
Sbjct: 262 NISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRV 321

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F+ M EE  + PD V Y+ VLS CSH G+ + GL  F+ +   +   +P I+HYGC+VD+
Sbjct: 322 FSDMLEEG-LTPDDVVYVGVLSACSHAGLVNEGLQCFNRM-QFEHMIKPTIQHYGCMVDL 379

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           +GRAG + EA + IK+MP +P   +  SLL AC+VH+N++IGE   + +  +   N G+Y
Sbjct: 380 MGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDY 439

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           ++L+N+YA A +W +V R+R  M EK + + PG S +E ++ ++ F + D+S P+ E + 
Sbjct: 440 LVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIY 499

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++Q+  + K  GY PDMS VL DVDE++K + L  HS+KLA+ F LI T EG+PIR+ 
Sbjct: 500 DMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRIS 559

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +NLR+C DCH + KF+S +Y R++++RD+NRFHH  +GTCSC DYW
Sbjct: 560 RNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 35/327 (10%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +EM   G+E     Y  +L AC     L+ G ++HAH+ K      V+++  LI  Y KC
Sbjct: 120 VEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKC 179

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATV 165
             +  A  +F++M E++V SW+++I A++      E L L   M         E    + 
Sbjct: 180 GAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSA 239

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L++C       LG+ IH +++++  E ++ V +SL+DMY K G + +   VF+ +  ++ 
Sbjct: 240 LSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNR 299

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
            S T +I+G A  G   EA+ +F  +  EG+  + V Y  VL+A S    +  G Q    
Sbjct: 300 YSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQ---- 355

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
                                      ++R  F++M + T+  +  M+    + GM +E 
Sbjct: 356 --------------------------CFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEA 389

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGC 372
            +L   M     +KP+ V + ++LS C
Sbjct: 390 YDLIKSM----PIKPNDVVWRSLLSAC 412


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 346/593 (58%), Gaps = 9/593 (1%)

Query: 46   LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            L  M + G  + +  + + L AC        G+ +H  ++ +       +   L+  Y K
Sbjct: 440  LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 499

Query: 106  CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
               +S++R++  +M  R+VV+W A+I  Y++     +AL  F  M       N  T  +V
Sbjct: 500  IGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSV 559

Query: 166  LTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            L++C   G    E GK +H+ I+ + FES  +V +SL+ MYAK G +  ++ +F  L  R
Sbjct: 560  LSACLLPGDL-LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR 618

Query: 224  DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
            ++++  A+++  A  G  EE ++L  K++  G+  +  +++  L+A + LA L  G+Q+H
Sbjct: 619  NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 678

Query: 284  SHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
               ++  FE  S++   N+  DMYSKCG +    ++      R++ SWN ++    +HG 
Sbjct: 679  GLAVKLGFEHDSFIF--NAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 736

Query: 342  GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
              EV   F+ M E   +KP  VT++++L+ CSHGG+ D+GLA +++++    G EP IEH
Sbjct: 737  FEEVCATFHEMLEMG-IKPGHVTFVSLLTACSHGGLVDKGLA-YYDMIARDFGLEPAIEH 794

Query: 402  YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
              CV+D+LGR+GR+ EA  FI  MP +P   +  SLL +C++H N+D G    + L ++E
Sbjct: 795  CICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLE 854

Query: 462  PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
            PE+   YV+ SN++A+ GRWEDV  VR+ M  K + K    SW++L   + +F   DR+H
Sbjct: 855  PEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTH 914

Query: 522  PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
            P   E+ AK++ +    KE+GYV D S  L D DEEQKE  L  HSE+LAL + L+ TPE
Sbjct: 915  PQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPE 974

Query: 582  GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G+ +R+ KNLRIC DCH+  KFVS+V GR++ LRD+ RFHH   G CSC DYW
Sbjct: 975  GSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL+   +    + G+ +H  ++K  +   V +   L+  Y       +A  +F +M  +
Sbjct: 356 TLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 415

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SW ++++++     S +AL L   M+ S    N  TF + L +C     FE G+ +H
Sbjct: 416 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 475

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L++ S    +  +G++L+ MY K G + E+R V   +P RDVV+  A+I GYA+    +
Sbjct: 476 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTA--LSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           +A+  F+ ++VEG+ SNY+T  SVL+A  L G   L  GK +H++++     S   ++NS
Sbjct: 536 KALAAFQTMRVEGVSSNYITVVSVLSACLLPG-DLLERGKPLHAYIVSAGFESDEHVKNS 594

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY+KCG L+ S+ +F+ +  R +I+WNAML   + HG G EV++L + MR    V  
Sbjct: 595 LITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG-VSL 653

Query: 361 DSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           D  ++   LS  +       G +  GLAV       K GFE +   +    DM  + G +
Sbjct: 654 DQFSFSEGLSAAAKLAVLEEGQQLHGLAV-------KLGFEHDSFIFNAAADMYSKCGEI 706

Query: 416 GEALEFIKNMPFE-----PTAAILGSLLG 439
           GE    +K +P       P+  IL S LG
Sbjct: 707 GEV---VKMLPPSVNRSLPSWNILISALG 732



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 174/352 (49%), Gaps = 31/352 (8%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ VHA  +K   R  V     LI  Y K   +  AR +FD M  RN VSW  M+S   +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFESHI 194
                E +  F +M     +P+ F  A+++T+C  +G+  F  G Q+H  + KS   S +
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSM-FREGVQVHGFVAKSGLLSDV 209

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           YV +++L +Y   G +  +R VFE +P+R+VVS T+++ GY+  G  EE I++++   + 
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL- 268

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
                                   G+Q+   V++  + S + ++NSLI M    G++ Y+
Sbjct: 269 ------------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 304

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
             +FD MSER  ISWN++   Y+++G   E   +F+LMR  +  + +S T   +LS   H
Sbjct: 305 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD-EVNSTTVSTLLSVLGH 363

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              +  G  +   +V  K GF+  +     ++ M   AGR  EA    K MP
Sbjct: 364 VDHQKWGRGIHGLVV--KMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP 413



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 177/350 (50%), Gaps = 4/350 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+++   ++K+     + +   LI        +  A  +FD+M ER+ +SW ++ +AY+Q
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
             H  E+  +F  M R   E N  T +T+L+        + G+ IH L++K  F+S + V
Sbjct: 329 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 388

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++LL MYA AGR  EA  VF+ +P +D++S  ++++ +   G   +A+ L   +   G 
Sbjct: 389 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             NYVT+ S L A         G+ +H  V+   +    ++ N+L+ MY K G ++ SRR
Sbjct: 449 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR 508

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHG 375
           V   M  R V++WNA++ GY++     + +  F  MR E  V  + +T ++VLS C   G
Sbjct: 509 VLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEG-VSSNYITVVSVLSACLLPG 567

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            + +RG  +   IV    GFE +      ++ M  + G +  + +    +
Sbjct: 568 DLLERGKPLHAYIVSA--GFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 615



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 29/380 (7%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTL-RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +M  LG++       +L+ AC    ++ R G +VH  + K+     VY+ T ++  Y   
Sbjct: 163 KMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVY 222

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S +RK+F+EM +RNVVSWT+++  YS K    E ++++          +E       
Sbjct: 223 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---------KDE------- 266

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
                     LG+QI   ++KS  ES + V +SL+ M    G +  A  +F+ + ERD +
Sbjct: 267 ---------SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 317

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +I + YAQ G  EE+  +F  ++      N  T +++L+ L  +     G+ +H  V
Sbjct: 318 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 377

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++    S V + N+L+ MY+  G    +  VF  M  + +ISWN+++  +   G   + +
Sbjct: 378 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 437

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            L   M    K   + VT+ + L+ C      ++G  + H +V     F  +I     +V
Sbjct: 438 GLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIG-NALV 494

Query: 407 DMLGRAGRVGEALEFIKNMP 426
            M G+ G + E+   +  MP
Sbjct: 495 SMYGKIGEMSESRRVLLQMP 514



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           ++ K + +M + G+ +    +   L+A      L  GQ++H   +K  +    ++     
Sbjct: 638 EVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAA 697

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC  + +  KM      R++ SW  +ISA  +  +  E    F  ML    +P   
Sbjct: 698 DMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHV 757

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           TF ++LT+C+     + G   + +I +    E  I     ++D+  ++GR+ EA      
Sbjct: 758 TFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK 817

Query: 220 LPER--DVVSCTAIISGYAQLGLD--EEAIELFRKLQVE 254
           +P +  D+V  + + S      LD   +A E   KL+ E
Sbjct: 818 MPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 856


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 346/593 (58%), Gaps = 9/593 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
           L  M + G  + +  + + L AC        G+ +H  ++ +       +   L+  Y K
Sbjct: 350 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 409

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              +S++R++  +M  R+VV+W A+I  Y++     +AL  F  M       N  T  +V
Sbjct: 410 IGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSV 469

Query: 166 LTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           L++C   G    E GK +H+ I+ + FES  +V +SL+ MYAK G +  ++ +F  L  R
Sbjct: 470 LSACLLPGDL-LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR 528

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           ++++  A+++  A  G  EE ++L  K++  G+  +  +++  L+A + LA L  G+Q+H
Sbjct: 529 NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 588

Query: 284 SHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
              ++  FE  S++   N+  DMYSKCG +    ++      R++ SWN ++    +HG 
Sbjct: 589 GLAVKLGFEHDSFIF--NAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 646

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             EV   F+ M E   +KP  VT++++L+ CSHGG+ D+GLA +++++    G EP IEH
Sbjct: 647 FEEVCATFHEMLEMG-IKPGHVTFVSLLTACSHGGLVDKGLA-YYDMIARDFGLEPAIEH 704

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
             CV+D+LGR+GR+ EA  FI  MP +P   +  SLL +C++H N+D G    + L ++E
Sbjct: 705 CICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLE 764

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PE+   YV+ SN++A+ GRWEDV  VR+ M  K + K    SW++L   + +F   DR+H
Sbjct: 765 PEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTH 824

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P   E+ AK++ +    KE+GYV D S  L D DEEQKE  L  HSE+LAL + L+ TPE
Sbjct: 825 PQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPE 884

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G+ +R+ KNLRIC DCH+  KFVS+V GR++ LRD+ RFHH   G CSC DYW
Sbjct: 885 GSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL+   +    + G+ +H  ++K  +   V +   L+  Y       +A  +F +M  +
Sbjct: 266 TLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 325

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +++SW ++++++     S +AL L   M+ S    N  TF + L +C     FE G+ +H
Sbjct: 326 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILH 385

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L++ S    +  +G++L+ MY K G + E+R V   +P RDVV+  A+I GYA+    +
Sbjct: 386 GLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 445

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTA--LSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
           +A+  F+ ++VEG+ SNY+T  SVL+A  L G   L  GK +H++++     S   ++NS
Sbjct: 446 KALAAFQTMRVEGVSSNYITVVSVLSACLLPG-DLLERGKPLHAYIVSAGFESDEHVKNS 504

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MY+KCG L+ S+ +F+ +  R +I+WNAML   + HG G EV++L + MR    V  
Sbjct: 505 LITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG-VSL 563

Query: 361 DSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
           D  ++   LS  +       G +  GLAV       K GFE +   +    DM  + G +
Sbjct: 564 DQFSFSEGLSAAAKLAVLEEGQQLHGLAV-------KLGFEHDSFIFNAAADMYSKCGEI 616

Query: 416 GEALEFIKNMPFE-----PTAAILGSLLG 439
           GE    +K +P       P+  IL S LG
Sbjct: 617 GEV---VKMLPPSVNRSLPSWNILISALG 642



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 175/327 (53%), Gaps = 6/327 (1%)

Query: 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT 161
            Y K   +  AR +FD M  RN VSW  M+S   +     E +  F +M     +P+ F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 162 FATVLTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            A+++T+C  +G+  F  G Q+H  + KS   S +YV +++L +Y   G +  +R VFE 
Sbjct: 61  IASLVTACGRSGSM-FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           +P+R+VVS T+++ GY+  G  EE I++++ ++ EG+  N  + + V+++   L     G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           +Q+   V++  + S + ++NSLI M    G++ Y+  +FD MSER  ISWN++   Y+++
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G   E   +F+LMR  +  + +S T   +LS   H   +  G  +   +V  K GF+  +
Sbjct: 240 GHIEESFRIFSLMRRFHD-EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV--KMGFDSVV 296

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMP 426
                ++ M   AGR  EA    K MP
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMP 323



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 177/350 (50%), Gaps = 4/350 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+++   ++K+     + +   LI        +  A  +FD+M ER+ +SW ++ +AY+Q
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
             H  E+  +F  M R   E N  T +T+L+        + G+ IH L++K  F+S + V
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 298

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            ++LL MYA AGR  EA  VF+ +P +D++S  ++++ +   G   +A+ L   +   G 
Sbjct: 299 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 358

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             NYVT+ S L A         G+ +H  V+   +    ++ N+L+ MY K G ++ SRR
Sbjct: 359 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR 418

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHG 375
           V   M  R V++WNA++ GY++     + +  F  MR E  V  + +T ++VLS C   G
Sbjct: 419 VLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEG-VSSNYITVVSVLSACLLPG 477

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            + +RG  +   IV    GFE +      ++ M  + G +  + +    +
Sbjct: 478 DLLERGKPLHAYIVSA--GFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 525



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 189/386 (48%), Gaps = 4/386 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTL-RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +M  LG++       +L+ AC    ++ R G +VH  + K+     VY+ T ++  Y   
Sbjct: 48  KMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVY 107

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S +RK+F+EM +RNVVSWT+++  YS K    E ++++  M       NE + + V+
Sbjct: 108 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVI 167

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +SC       LG+QI   ++KS  ES + V +SL+ M    G +  A  +F+ + ERD +
Sbjct: 168 SSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 227

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +I + YAQ G  EE+  +F  ++      N  T +++L+ L  +     G+ +H  V
Sbjct: 228 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 287

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++    S V + N+L+ MY+  G    +  VF  M  + +ISWN+++  +   G   + +
Sbjct: 288 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 347

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            L   M    K   + VT+ + L+ C      ++G  + H +V     F  +I     +V
Sbjct: 348 GLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIG-NALV 404

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAA 432
            M G+ G + E+   +  MP     A
Sbjct: 405 SMYGKIGEMSESRRVLLQMPRRDVVA 430



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           ++ K + +M + G+ +    +   L+A      L  GQ++H   +K  +    ++     
Sbjct: 548 EVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAA 607

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC  + +  KM      R++ SW  +ISA  +  +  E    F  ML    +P   
Sbjct: 608 DMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHV 667

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           TF ++LT+C+     + G   + +I +    E  I     ++D+  ++GR+ EA      
Sbjct: 668 TFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK 727

Query: 220 LPER--DVV--SCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +P +  D+V  S  A    +  L    +A E   KL+ E
Sbjct: 728 MPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 766


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 343/590 (58%), Gaps = 9/590 (1%)

Query: 45   ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
            AL+EM   G+      + ++L++C   +     Q +   ++++ YR    L T LI  + 
Sbjct: 528  ALMEMLQGGVLPDALSFTSVLSSCYCSQE---AQVLRMCILESGYRSAC-LETALISMHG 583

Query: 105  KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164
            +C  L  AR +FDEM   +VVSWTAM+SA ++     E  +LF RM      P++FT AT
Sbjct: 584  RCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLAT 643

Query: 165  VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
             L +C  +    LGK IH+ + +   E+ I V ++LL+MY+  G   EA   FE +  RD
Sbjct: 644  TLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARD 703

Query: 225  VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
            +VS   + + YAQ GL +EA+ LFR +Q+EG+  + +T+++ L    G A +  GK  H 
Sbjct: 704  LVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHG 763

Query: 285  HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
                  + S V +   L+ +Y+KCG L  +  +F    + TV+  NA++   ++HG   E
Sbjct: 764  LAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEE 823

Query: 345  VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
             V++F  M++E  V+PD  T ++++S C H GM + G + F  + +   G  P +EHY C
Sbjct: 824  AVKMFWKMQQEG-VRPDVATLVSIISACGHAGMVEEGCSSFLTMKE-YFGISPTLEHYAC 881

Query: 405  VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
             VD+LGRAG++  A + I+ MPFE    +  SLLG C++  + ++GE   QR++E++P N
Sbjct: 882  FVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHN 941

Query: 465  AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
            +  +V+LSN+Y + G+W+D    R+ + ++ V   PG SW+E+ + +H F A DRSHP  
Sbjct: 942  SAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQT 1001

Query: 525  EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
            +E+   + +L +  + AGY  D      D ++E KEK L  HSE++A+ FGLI TP    
Sbjct: 1002 DEIYVVLDKLELLMRRAGYEADKG---LDAEDELKEKALGYHSERIAIAFGLIATPPDTT 1058

Query: 585  IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            ++++KNLR+C DCH   K++S + GR++ +RD  RFHH   GTCSC D W
Sbjct: 1059 LKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 212/426 (49%), Gaps = 16/426 (3%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
            +EY  LL +CV+   L  G+R H  +        ++L   LI  Y +C  L +A  +F 
Sbjct: 25  LQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 118 EMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFE 176
           +M ERNVVSWTA+ISA +Q      A  LF  M L S   PN +T   +L +CA +    
Sbjct: 85  KMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLA 144

Query: 177 LGKQIHSLIIKSNFE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           +G+ IH++I +   E    +   VG+++++MYAK G   +A  VF  +PE+DVVS TA+ 
Sbjct: 145 IGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMA 204

Query: 233 SGYAQ-LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
             YAQ      +A+ +FR++ ++ +  N +T+   +TAL    +L  G  +HS +    +
Sbjct: 205 GAYAQERRFYPDALRIFREMLLQPLAPNVITF---ITALGACTSLRDGTWLHSLLHEAGL 261

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT---VISWNAMLVGYSKHGMGREVVEL 348
               +  N+LI+MY KCG    +  VF  M+ R    ++SWNAM+    + G   + + +
Sbjct: 262 GFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  +R E  ++P+SVT + +L+  +  G++      FH  +  + G+  ++     ++ M
Sbjct: 322 FRRLRLEG-MRPNSVTLITILNALAASGVDFGAARKFHGRI-WESGYLRDVVVGNAIISM 379

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC--RVHYNVDIGEFVGQRLMEIEPENAG 466
             + G    A    + + ++       ++LGA   R  +   +  F    L  I+P    
Sbjct: 380 YAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS 439

Query: 467 NYVILS 472
              IL+
Sbjct: 440 FIAILN 445



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 214/411 (52%), Gaps = 13/411 (3%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPV--YL 95
           S G++      M   G++     +  +LNAC N   L  G+++H+ +I T  R  V   +
Sbjct: 417 SFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS-LILTRRRDYVESSV 475

Query: 96  RTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
            T L+  Y KC  +++A  +F EM    R++V+W  M+ AY+Q   S EA    + ML+ 
Sbjct: 476 ATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQG 535

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
              P+  +F +VL+SC   +  +  + +   I++S + S   + ++L+ M+ +   + +A
Sbjct: 536 GVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQA 591

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R VF+ +   DVVS TA++S  A+    +E   LFR++Q+EG+I +  T A+ L      
Sbjct: 592 RSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDS 651

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
             LG GK +H+ V    + + + ++N+L++MYS CG    +   F+ M  R ++SWN M 
Sbjct: 652 TTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMS 711

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
             Y++ G+ +E V LF  M+ E  VKPD +T+   L+      +   G  +FH +   + 
Sbjct: 712 AAYAQAGLAKEAVLLFRHMQLEG-VKPDKLTFSTTLNVSGGSALVSDG-KLFHGLA-AES 768

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           G + ++     +V +  + G++ EA+   +    + T  +L +++GA   H
Sbjct: 769 GLDSDVSVATGLVKLYAKCGKLDEAISLFRG-ACQWTVVLLNAIIGALAQH 818



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 26/375 (6%)

Query: 63  TLLNACVNQRTLRGGQR-VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           T+LNA        G  R  H  + ++ Y   V +   +I  Y KC   S A  +F  +R 
Sbjct: 339 TILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRW 398

Query: 122 R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + +V+SW  M+ A   +    + +N F  ML +  +PN+ +F  +L +C+ +   + G++
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRK 458

Query: 181 IHSLIIKSNFESHIYVGSS----LLDMYAKAGRIHEARGVFE--CLPERDVVSCTAIISG 234
           IHSLI+    +   YV SS    L+ MY K G I EA  VF+   LP R +V+   ++  
Sbjct: 459 IHSLILTRRRD---YVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI--P 292
           YAQ    +EA     ++   G++ + +++ SVL++        +  Q  + VLR  I   
Sbjct: 516 YAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-------YCSQ-EAQVLRMCILES 567

Query: 293 SY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
            Y    L+ +LI M+ +C  L  +R VFD M    V+SW AM+   +++   +EV  LF 
Sbjct: 568 GYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFR 627

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M+ E  V PD  T    L  C        G  + H  V  + G E +I     +++M  
Sbjct: 628 RMQLEG-VIPDKFTLATTLDTCLDSTTLGLG-KIIHACVT-EIGLEADIAVENALLNMYS 684

Query: 411 RAGRVGEALEFIKNM 425
             G   EAL F + M
Sbjct: 685 NCGDWREALSFFETM 699



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 176/387 (45%), Gaps = 55/387 (14%)

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           +R D   +   +  +L SC  +     GK+ H LI  +  E H+++G+ L++MY + G +
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTA 269
            EA  +F  + ER+VVS TA+IS  AQ G    A  LFR + +E   + N  T  ++L A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 270 LSGLAALGHGKQVHSHV----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            +    L  G+ +H+ +    L  E  +  ++ N++I+MY+KCGS   +  VF  + E+ 
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKD 196

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREE--NKVKPDSVTYLAVLSGCS--------HG 375
           V+SW AM   Y++    R   +   + RE     + P+ +T++  L  C+        H 
Sbjct: 197 VVSWTAMAGAYAQE--RRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHS 254

Query: 376 GMEDRGL--------AVFHEIVDCKDG-------------FEPEIEHYGCVVDMLGRAGR 414
            + + GL        A+ +    C D               E ++  +  ++     AGR
Sbjct: 255 LLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGR 314

Query: 415 VGEALEFIKNMPFE---PTAAILGSLLGACRVHYNVDIG---EFVGQRLME---IEPENA 465
            G+A+   + +  E   P +  L ++L A      VD G   +F G R+ E   +     
Sbjct: 315 HGDAMAIFRRLRLEGMRPNSVTLITILNALAAS-GVDFGAARKFHG-RIWESGYLRDVVV 372

Query: 466 GNYVILSNLYASAG----RWEDVTRVR 488
           GN +I  ++YA  G     W    R+R
Sbjct: 373 GNAII--SMYAKCGFFSAAWTVFRRIR 397


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 361/665 (54%), Gaps = 53/665 (7%)

Query: 8   SRAFSSLTFTQQQ-LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLN 66
           SR FS+ T      +++  FP NPQ         Q     +E   +          T L+
Sbjct: 5   SRKFSTATSDSLACISLKQFPQNPQKPTPFYQIQQQQPKQLESQIV----------TTLD 54

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKM--FDEMRERNV 124
            C N   ++   +VHA ++        Y+  +LI    K     D   +  F+++   N 
Sbjct: 55  GCKNLTQIK---QVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNP 111

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS- 183
             + A+I  Y  +    E+   +  M +    P  FTF  +  +C       LG+QIH  
Sbjct: 112 FLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQ 171

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS---------- 233
            I+   F   ++VG+S++DMY K G +   R VF+ +P RDV+S T +IS          
Sbjct: 172 TILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMES 231

Query: 234 ---------------------GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
                                G+AQ     EAI  F K+Q  G+ ++ +T   V++A + 
Sbjct: 232 AGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQ 291

Query: 273 LAALGHGKQVHSHVLRFEIPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           L A  +   +     + E      VV+ ++LIDMYSKCGS+  + RVF  M ER V S++
Sbjct: 292 LGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYS 351

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
           +M++G++ HG   + ++LF+ M +  ++KP+ VT++ VL+ CSH GM ++G  +F  +  
Sbjct: 352 SMILGFAMHGRVHDAMKLFDEMVK-TEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410

Query: 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450
           C  G +P  +HY C+VD+LGRAGR+ EA E +K MP EP   + G+LLGACR+H + DI 
Sbjct: 411 CY-GIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIA 469

Query: 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ- 509
                 L E+EP   GNY++L+N+YAS GRW DV+ VR+LM+ + + K+P  SWIE ++ 
Sbjct: 470 AIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKG 529

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
           ++H F + D +HP   E+   ++ L  + +  GY P +S V YDV++E K ++L+ HSEK
Sbjct: 530 MVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEK 589

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LAL FGLI T  G+ IR++KNLRIC DCH+     S++ GR++ +RD  RFHH  +G CS
Sbjct: 590 LALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICS 649

Query: 630 CGDYW 634
           CG++W
Sbjct: 650 CGNFW 654


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 339/574 (59%), Gaps = 7/574 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+ +AC      R G+ VH +++K+ +   + +   LI  Y+    L +A  +F  M  +
Sbjct: 304 TVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK 363

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSWTAMI++       F+A+  +  M      P+E T  +VL++CA     +LG ++H
Sbjct: 364 DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLH 423

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            + IK+   SH+ V +SL+DMY+K   +  A  VF  +  ++VVS T++I G        
Sbjct: 424 EIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSF 483

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  FR+++ E M  N VT  SVL+A + + AL  GK++H+H LR  +     L N+++
Sbjct: 484 EALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAIL 542

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY +CG    +   F N  ++ V +WN +L GY++ G  +  VELF+ M E  ++ PD 
Sbjct: 543 DMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDE 600

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++++L  CS  GM   GL  F+ I+  K    P ++HY CVVD+LGRAG++ +A +FI
Sbjct: 601 ITFISLLCACSKSGMVTEGLEYFN-IMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++MP  P AAI G+LL ACR+H NV++GE   +R+ E + ++ G Y++L NLYA  G W+
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V++VR LM+E+ ++ DPG SW+E+   +H F + D SH   +E++  +     K KE G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           +    S    ++ E  +  +  GHSE+ A+ FGLI T  G PI V KNL +C  CHN  K
Sbjct: 780 FGNLKSSFTSEI-ESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVK 838

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGD--YW 634
           F+S +  R++S+RD   +HH  +G CSCGD  YW
Sbjct: 839 FISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 155/512 (30%), Positives = 255/512 (49%), Gaps = 23/512 (4%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFE----EYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           L+ LC  G L +A+  + ++ LE+R E     Y  LL  C  +R    G RV+  +  + 
Sbjct: 69  LRELCLQGNLEQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSK 127

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
               V L   L+  + +   L DA  +F +M ER+V SW  ++  Y++     EALNL+ 
Sbjct: 128 SCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYH 187

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RML ++  PN +TF +VL +CAG      GK+IH+ +I+  FES + VG++L+ MY K G
Sbjct: 188 RMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG 247

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            I  AR +F+ +P+RD +S  A+ISGY + G   E +ELF  ++   +  + +T  +V +
Sbjct: 248 DISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVAS 307

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A   L     G+ VH +V++ E    + + NSLI MYS  G L  +  VF  M  + V+S
Sbjct: 308 ACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS 367

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W AM+     H +  + VE + +M  E  + PD +T ++VLS C+  G  D G+ + HEI
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEG-ILPDEITLVSVLSACACIGHLDLGIRL-HEI 425

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
              K G    +     ++DM  +   V  ALE  +N+  +   +    +LG    + + +
Sbjct: 426 A-IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
              F  Q    ++P +     ++S L A A       R+  LM+ K +     R+ +  D
Sbjct: 485 ALLFFRQMKESMKPNSV---TLISVLSACA-------RIGALMRGKEIHAHALRTGVGFD 534

Query: 509 -----QILHTFHASDRSHPMREELSAKVKQLS 535
                 IL  +    R  P   + +++ K ++
Sbjct: 535 GFLPNAILDMYVRCGRKVPALNQFNSQKKDVT 566



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 204/371 (54%), Gaps = 4/371 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L  C     +  G+ +HAH+I+  +   V +   LI  Y KC  +S+AR +FD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R+ +SW AMIS Y +     E L LF  M     +P+  T  TV ++C       LG+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  ++KS F   I + +SL+ MY+  GR+ EA  VF  +  +DVVS TA+I+      L
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A+E ++ +++EG++ + +T  SVL+A + +  L  G ++H   ++  + S+V++ NS
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMYSKC  +  +  VF N+S + V+SW ++++G   +    E +  F  M+E   +KP
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKP 498

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +SVT ++VLS C+  G   RG  +    +    GF+  + +   ++DM  R GR   AL 
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKVPALN 556

Query: 421 FIKNMPFEPTA 431
              +   + TA
Sbjct: 557 QFNSQKKDVTA 567


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 339/574 (59%), Gaps = 7/574 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+ +AC      R G+ VH +++K+ +   + +   LI  Y+    L +A  +F  M  +
Sbjct: 304 TVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESK 363

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVSWTAMI++       F+A+  +  M      P+E T  +VL++CA     +LG ++H
Sbjct: 364 DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLH 423

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            + IK+   SH+ V +SL+DMY+K   +  A  VF  +  ++VVS T++I G        
Sbjct: 424 EIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSF 483

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+  FR+++ E M  N VT  SVL+A + + AL  GK++H+H LR  +     L N+++
Sbjct: 484 EALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAIL 542

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY +CG    +   F N  ++ V +WN +L GY++ G  +  VELF+ M E  ++ PD 
Sbjct: 543 DMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDE 600

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++++L  CS  GM   GL  F+ I+  K    P ++HY CVVD+LGRAG++ +A +FI
Sbjct: 601 ITFISLLCACSKSGMVTEGLEYFN-IMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           ++MP  P AAI G+LL ACR+H NV++GE   +R+ E + ++ G Y++L NLYA  G W+
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V++VR LM+E+ ++ DPG SW+E+   +H F + D SH   +E++  +     K KE G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           +    S    ++ E  +  +  GHSE+ A+ FGLI T  G PI V KNL +C  CHN  K
Sbjct: 780 FGNLKSSFTSEI-ESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVK 838

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGD--YW 634
           F+S +  R++S+RD   +HH  +G CSCGD  YW
Sbjct: 839 FISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 155/512 (30%), Positives = 255/512 (49%), Gaps = 23/512 (4%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFE----EYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           L+ LC  G L +A+  + ++ LE+R E     Y  LL  C  +R    G RV+  +  + 
Sbjct: 69  LRELCLQGNLEQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSK 127

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
               V L   L+  + +   L DA  +F +M ER+V SW  ++  Y++     EALNL+ 
Sbjct: 128 SCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYH 187

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           RML ++  PN +TF +VL +CAG      GK+IH+ +I+  FES + VG++L+ MY K G
Sbjct: 188 RMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG 247

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            I  AR +F+ +P+RD +S  A+ISGY + G   E +ELF  ++   +  + +T  +V +
Sbjct: 248 DISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVAS 307

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A   L     G+ VH +V++ E    + + NSLI MYS  G L  +  VF  M  + V+S
Sbjct: 308 ACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS 367

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W AM+     H +  + VE + +M  E  + PD +T ++VLS C+  G  D G+ + HEI
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEG-ILPDEITLVSVLSACACIGHLDLGIRL-HEI 425

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
              K G    +     ++DM  +   V  ALE  +N+  +   +    +LG    + + +
Sbjct: 426 A-IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
              F  Q    ++P +     ++S L A A       R+  LM+ K +     R+ +  D
Sbjct: 485 ALLFFRQMKESMKPNSV---TLISVLSACA-------RIGALMRGKEIHAHALRTGVGFD 534

Query: 509 -----QILHTFHASDRSHPMREELSAKVKQLS 535
                 IL  +    R  P   + +++ K ++
Sbjct: 535 GFLPNAILDMYVRCGRKVPALNQFNSQKKDVT 566



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 204/371 (54%), Gaps = 4/371 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L  C     +  G+ +HAH+I+  +   V +   LI  Y KC  +S+AR +FD+M 
Sbjct: 201 FPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R+ +SW AMIS Y +     E L LF  M     +P+  T  TV ++C       LG+ 
Sbjct: 261 KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  ++KS F   I + +SL+ MY+  GR+ EA  VF  +  +DVVS TA+I+      L
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A+E ++ +++EG++ + +T  SVL+A + +  L  G ++H   ++  + S+V++ NS
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMYSKC  +  +  VF N+S + V+SW ++++G   +    E +  F  M+E   +KP
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKP 498

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           +SVT ++VLS C+  G   RG  +    +    GF+  + +   ++DM  R GR   AL 
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKVPALN 556

Query: 421 FIKNMPFEPTA 431
              +   + TA
Sbjct: 557 QFNSQKKDVTA 567


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 330/560 (58%), Gaps = 5/560 (0%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G+++HA  +K       ++       Y+K     +A+++FDEM  RNV  W A IS   
Sbjct: 76  AGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAV 135

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 +A++ FI   R   EP+  TF   L +CA A   +LG+Q+H L+I+S FE  + 
Sbjct: 136 LDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVS 195

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V + ++D+Y K   +  A  VF  +  R+ VS   +++   Q    E+A  +F   + EG
Sbjct: 196 VANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEG 255

Query: 256 M-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           + +++Y+  +SV++A +G++ L  G+ VH+  ++  +   + + ++L+DMY KCGS+   
Sbjct: 256 IELTDYMV-SSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDC 314

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            +VF  M ER ++SWNAM+ GY+  G     + LF  M+ E     + VT + VLS CS 
Sbjct: 315 EQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSE--AVANYVTLICVLSACSR 372

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           GG    G  +F  + D +   EP  EHY C+ DMLGRAG V  A EF++ MP  PT ++ 
Sbjct: 373 GGAVKLGNEIFESMRD-RYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVW 431

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           G+LL ACRV+   ++G+     L +++P+++GN+V+LSN++A+AGRW++ T VR+ MK+ 
Sbjct: 432 GALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDV 491

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K  G SW+     +H F A D SH    E+ A + +L  + + AGY+PD +  LYD+
Sbjct: 492 GIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDL 551

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +EE+K   +  HSEK+AL FGLI  P G PIR+ KNLRIC DCH+  KF+S + GR++ +
Sbjct: 552 EEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIV 611

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD NRFH   +  CSC D+W
Sbjct: 612 RDNNRFHRFRDSQCSCRDFW 631



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 165/331 (49%), Gaps = 10/331 (3%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSN-------GQLTKALIEMATLGLEMRFEEYDTL 64
           + L F  Q+L     P N        SN       G+     IE   +G E     +   
Sbjct: 106 TGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAF 165

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           LNAC + R L  G+++H  +I++ +   V +   +I  Y KC+ +  A  +F+ M  RN 
Sbjct: 166 LNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNS 225

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW  M++A  Q     +A  +F+   +   E  ++  ++V+++ AG  G E G+ +H+L
Sbjct: 226 VSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHAL 285

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            +K+  E  I+VGS+L+DMY K G I +   VF  +PER++VS  A+ISGYA  G  + A
Sbjct: 286 AVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMA 345

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLID 303
           + LF ++Q E  ++NYVT   VL+A S   A+  G ++  S   R+ I         + D
Sbjct: 346 MTLFEEMQSEA-VANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIAD 404

Query: 304 MYSKCGSLTYSRRVFDNMSERTVIS-WNAML 333
           M  + G +  +      M  R  IS W A+L
Sbjct: 405 MLGRAGMVERAYEFVQKMPIRPTISVWGALL 435



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 175/378 (46%), Gaps = 7/378 (1%)

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y+K +  + A+ +      R VV+WTA+IS   Q  +   AL  F +M R + +PN+FTF
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
                +         GKQIH++ +K    +  +VG S  DMY+K G   EA+ +F+ +P 
Sbjct: 62  PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPP 121

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           R+V    A IS     G   +AI+ F + +  G   + +T+ + L A +    L  G+Q+
Sbjct: 122 RNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQL 181

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  V+R      V + N +ID+Y KC  +  +  VF+ M  R  +SW  M+    ++   
Sbjct: 182 HGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEK 241

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            +   +F + R+E     D +    + +     G+E  G +V    V  K   E +I   
Sbjct: 242 EKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLE-FGRSVHALAV--KACVEGDIFVG 298

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
             +VDM G+ G + +  +    MP E       +++       +VD+   + +   E++ 
Sbjct: 299 SALVDMYGKCGSIEDCEQVFHEMP-ERNLVSWNAMISGYAHQGDVDMAMTLFE---EMQS 354

Query: 463 ENAGNYVILSNLYASAGR 480
           E   NYV L  + ++  R
Sbjct: 355 EAVANYVTLICVLSACSR 372



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 4/239 (1%)

Query: 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT 262
           MY+K    + A+ + +  P R VV+ TA+ISG  Q G    A+  F K++ E +  N  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           +     A + L     GKQ+H+  L+    +   +  S  DMYSK G    ++R+FD M 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            R V  WNA +      G   + ++ F   R     +PD +T+ A L+ C+     D G 
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGG-EPDLITFCAFLNACADARCLDLGR 179

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
            +   ++  + GFE ++     ++D+ G+   V E  E + N      +    +++ AC
Sbjct: 180 QLHGLVI--RSGFEGDVSVANGIIDVYGKCKEV-ELAEMVFNGMGRRNSVSWCTMVAAC 235


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 320/526 (60%), Gaps = 3/526 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + DA K+F +M  +NV+SWT MI    Q   S EAL+LF  MLR   +     F  V+T+
Sbjct: 175 VDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITA 234

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CA A  F +G Q+H LIIK  F    YV +SL+  YA   RI ++R VF+      V   
Sbjct: 235 CANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVW 294

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA++SGY+     E+A+ +F  +    ++ N  T+AS L + S L  L  GK++H   ++
Sbjct: 295 TALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVK 354

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + +   + NSL+ MYS  G++  +  VF  + +++++SWN+++VG ++HG G+    +
Sbjct: 355 LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVI 414

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M   NK +PD +T+  +LS CSH G  ++G  +F+ +    +  + +I+HY C+VD+
Sbjct: 415 FGQMIRLNK-EPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDI 473

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR G++ EA E I+ M  +P   +  +LL ACR+H +VD GE     +  ++ +++  Y
Sbjct: 474 LGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAY 533

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+YASAGRW +V+++R  MK+  + K PG SW+ +    H F + D+ H  R  + 
Sbjct: 534 VLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCSR--IY 591

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
            K++ L  K KE GY PD    L+DV++EQKE++L  HSE+LA+ FGLI T EG+ + V+
Sbjct: 592 EKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVM 651

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K +S V GR++ LRD  RFHH   GTCSCGDYW
Sbjct: 652 KNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 158/328 (48%), Gaps = 47/328 (14%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  ++ AC N      G +VH  +IK  +    Y+   LI FY  C+ + D+RK+FDE  
Sbjct: 228 FTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKV 287

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              V  WTA++S YS      +AL++F  MLR+   PN+ TFA+ L SC+     + GK+
Sbjct: 288 HEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKE 347

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H + +K   E+  +VG+SL+ MY+ +G +++A  VF  + ++ +VS  +II G AQ G 
Sbjct: 348 MHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGR 407

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH-------SHVLRFEIPS 293
            + A  +F ++       + +T+  +L+A S    L  G+++        +H+ R +I  
Sbjct: 408 GKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDR-KIQH 466

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
           Y      ++D+  +CG L                               +E  EL   M 
Sbjct: 467 YTC----MVDILGRCGKL-------------------------------KEAEELIERM- 490

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRG 381
               VKP+ + +LA+LS C      DRG
Sbjct: 491 ---VVKPNEMVWLALLSACRMHSDVDRG 515



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 166/357 (46%), Gaps = 18/357 (5%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V L T++I  Y +   L DA  +FDEM  R+VVSW +MIS   +      A+ LF  M
Sbjct: 64  PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEM 123

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGK--QIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
                E +  ++  ++  C     F  GK  Q   L  +   +      +S++  Y + G
Sbjct: 124 ----PERSVVSWTAMVNGC-----FRSGKVDQAERLFYQMPVKD-TAAWNSMVHGYLQFG 173

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           ++ +A  +F+ +P ++V+S T +I G  Q     EA++LF+ +    + S    +  V+T
Sbjct: 174 KVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVIT 233

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A +   A   G QVH  +++        +  SLI  Y+ C  +  SR+VFD      V  
Sbjct: 234 ACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAV 293

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W A+L GYS +    + + +F+ M   N + P+  T+ + L+ CS  G  D G  +    
Sbjct: 294 WTALLSGYSLNKKHEDALSIFSGML-RNSILPNQSTFASGLNSCSALGTLDWGKEMHG-- 350

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE-FIKNMPFEPTAAILGSLLGACRVH 444
           V  K G E +      +V M   +G V +A+  FIK   F+ +     S++  C  H
Sbjct: 351 VAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIK--IFKKSIVSWNSIIVGCAQH 405



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 50/217 (23%)

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           RI EAR VF  +P   V   T +I+GY +     +A+ LF ++ V  ++S          
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVS---------- 99

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
                                         NS+I    +CG +  + ++FD M ER+V+S
Sbjct: 100 -----------------------------WNSMISGCVECGDMNTAVKLFDEMPERSVVS 130

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W AM+ G  + G   +   LF  M     VK D+  + +++ G    G  D  L +F ++
Sbjct: 131 WTAMVNGCFRSGKVDQAERLFYQM----PVK-DTAAWNSMVHGYLQFGKVDDALKLFKQM 185

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                     +  +  ++  L +  R GEAL+  KNM
Sbjct: 186 PG------KNVISWTTMICGLDQNERSGEALDLFKNM 216


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 345/593 (58%), Gaps = 9/593 (1%)

Query: 46   LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            L  M   G  + +  + + L AC +      G+ +H  ++ +       +   L+  Y K
Sbjct: 451  LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGK 510

Query: 106  CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
               +S +R++  +M  R+VV+W A+I  Y++     +AL  F  +       N  T  +V
Sbjct: 511  IGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSV 570

Query: 166  LTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            L++C   G    E GK +H+ I+ + FES  +V +SL+ MYAK G +  ++ +F  L  R
Sbjct: 571  LSACLVPGDL-LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR 629

Query: 224  DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
             +++  AI++  A  G  EE ++L  K++  G+  +  +++  L+A + LA L  G+Q+H
Sbjct: 630  SIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLH 689

Query: 284  SHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
               ++  FE+  ++   N+  DMYSKCG +    ++      R++ SWN ++    +HG 
Sbjct: 690  GLAVKLGFELDCFIF--NAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 747

Query: 342  GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
              EV E F+ M E   +KP  VT++++L+ CSHGG+ D+GLA +++++    G EP IEH
Sbjct: 748  FEEVCETFHEMLEMG-IKPGHVTFVSLLTACSHGGLVDQGLA-YYDMIAKDFGLEPAIEH 805

Query: 402  YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
              CV+D+LGR+GR+ EA  FI  MP +P   +  SLL +C++H ++D G    + L ++E
Sbjct: 806  CICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLE 865

Query: 462  PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
            PE+   +V+ SN++A+ GRWEDV  VR+ M  K + K    SW++L   + +F   DR+H
Sbjct: 866  PEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTH 925

Query: 522  PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
            P   E+ AK++ +    KE+GYV D S  L D DEEQKE  L  HSE+LAL + L+ TPE
Sbjct: 926  PQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPE 985

Query: 582  GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            G+ +R+ KNLRIC DCH+  KFVS+V GR++ LRD+ RFHH   G CSC DYW
Sbjct: 986  GSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 192/354 (54%), Gaps = 10/354 (2%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +HA  +K   R  V     LI  Y K   +  AR +FD+M  RN VSW  M+S   +
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFESHI 194
                E +  F +M     +P+ F  A+++T+C  +G+  F  G Q+H  + KS   S +
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSM-FREGVQVHGFVAKSGLLSDV 195

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           YV +++L +Y   G +  +R VFE +P+R+VVS T+++ GY+  G  EE I++++ ++ E
Sbjct: 196 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGE 255

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  N  + + V+++   L     G+Q+   V++  + S + ++NSLI M+   G++ Y+
Sbjct: 256 GVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYA 315

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE-ENKVKPDSV-TYLAVLSGC 372
             +F+ +SER  ISWN+++  Y+++G   E   +FNLMR   ++V   +V T L+VL   
Sbjct: 316 NYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDV 375

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            H     RG+   H +V  K GF+  +     ++ M   AGR  EA    K MP
Sbjct: 376 DHQKW-GRGI---HGLV-VKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMP 424



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 191/386 (49%), Gaps = 4/386 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTL-RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +M  LG++       +L+ AC    ++ R G +VH  + K+     VY+ T ++  Y   
Sbjct: 149 KMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVY 208

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +S +RK+F+EM +RNVVSWT+++  YS K    E ++++  M     E NE + + V+
Sbjct: 209 GLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVI 268

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +SC       LG+QI   +IKS  ES + V +SL+ M+   G +  A  +F  + ERD +
Sbjct: 269 SSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTI 328

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  +I++ YAQ G  EE+  +F  ++      N  T +++L+ L  +     G+ +H  V
Sbjct: 329 SWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLV 388

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++    S V + N+L+ MY+  G    +  VF  M  + +ISWN+++  +   G   + +
Sbjct: 389 VKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 448

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
            +   M    K   + VT+ + L+ C      D+G  + H +V     F+ +I     +V
Sbjct: 449 GILCSMIRTGK-SVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIG-NALV 505

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAA 432
            M G+ G +  +   +  MP     A
Sbjct: 506 SMYGKIGGMSTSRRVLLQMPRRDVVA 531



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 189/374 (50%), Gaps = 4/374 (1%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           G+E        ++++C   +    G+++   +IK+     + +   LI  +     +  A
Sbjct: 256 GVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYA 315

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
             +F+++ ER+ +SW ++++AY+Q  H  E+  +F  M R   E N  T +T+L+     
Sbjct: 316 NYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDV 375

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
              + G+ IH L++K  F+S + V ++LL MYA AGR  EA  VF+ +P +D++S  +++
Sbjct: 376 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLM 435

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + +   G   +A+ +   +   G   NYVT+ S L A         G+ +H  V+   + 
Sbjct: 436 ASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLF 495

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
              ++ N+L+ MY K G ++ SRRV   M  R V++WNA++ GY+++    + +  F  +
Sbjct: 496 DNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTL 555

Query: 353 REENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           R E  V  + +T ++VLS C   G + +RG  +   IV    GFE +      ++ M  +
Sbjct: 556 RVEG-VSANYITVVSVLSACLVPGDLLERGKPLHAYIVSA--GFESDEHVKNSLITMYAK 612

Query: 412 AGRVGEALEFIKNM 425
            G +  + +    +
Sbjct: 613 CGDLSSSQDLFNGL 626



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           ++ K + +M + GL +    +   L+A      L  GQ++H   +K  +    ++     
Sbjct: 649 EVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAA 708

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC  + +  KM      R++ SW  +ISA  +  +  E    F  ML    +P   
Sbjct: 709 DMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHV 768

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           TF ++LT+C+     + G   + +I K    E  I     ++D+  ++GR+ EA      
Sbjct: 769 TFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK 828

Query: 220 LPER--DVVSCTAIISGYAQLGLD--EEAIELFRKLQVE 254
           +P +  D+V  + + S      LD   +A E   KL+ E
Sbjct: 829 MPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPE 867



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           T  S +     G+ +H+  ++  +   V+  N+LI+MY+K G +  +R +FD M  R  +
Sbjct: 66  TGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEV 125

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SWN M+ G  + G+  E +E F  M +   +KP S    ++++ C   G   R     H 
Sbjct: 126 SWNTMMSGIVRVGLYLEGMEFFQKMCDLG-IKPSSFVIASLVTACGRSGSMFREGVQVHG 184

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            V  K G   ++     ++ + G  G V  + +  + MP
Sbjct: 185 FV-AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 222


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/534 (38%), Positives = 322/534 (60%), Gaps = 55/534 (10%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           D  P+  +   VL +CA    +  GK +H + ++S     ++VG++L+DMYAK G + EA
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--- 270
             VF+ + E+DVVS  A+++GY+Q+G  E+A+ LF K++ E +  N V++++V+ A    
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 271 -------------------------------------------------SGLAALGHGKQ 281
                                                            + LAAL  G+Q
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 282 VHSHVLRFEIPS-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           +H+++LR    S ++ + N LIDMY+K G +  +R VFDN+ ++  +SW +++ GY  HG
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
            G+E +E+F+ MR    ++PD VT L VL  CSH GM D+G+  F+ +   + G  P  E
Sbjct: 248 RGKEALEVFDEMRRVG-LQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK-EFGVIPGQE 305

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C+VD+LGRAGR+ EA+E I+ M  EP++ +  +LL  CR+H NV++GE   ++L+E+
Sbjct: 306 HYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLEL 365

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
             EN G+Y +LSN+YA+A RW+DV RVR LMK   + K PG SW++  +   TF+ +D++
Sbjct: 366 NSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKT 425

Query: 521 HPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP 580
           HP  +++   ++ L+ + K  GYVP+ S  L+DVD+E+K  +L  HSEKLAL +G++ + 
Sbjct: 426 HPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISA 485

Query: 581 EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            GAPIR+ KNLR+C DCHN   ++S +   ++ LRD +RFHH  +G+CSC  YW
Sbjct: 486 PGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 55/333 (16%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +      G+ VH   +++     +++   L+  Y KC  + +A K+FD ++E+
Sbjct: 18  NVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEK 77

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-------------------------- 156
           +VVSW AM++ YSQ     +AL LF +M   + E                          
Sbjct: 78  DVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVF 137

Query: 157 --------------------------PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
                                     PN FT +  L +CA      LG+QIH+ I++++F
Sbjct: 138 REMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHF 197

Query: 191 ES-HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           +S  +YV + L+DMYAK+G I  AR VF+ L +++ VS T++++GY   G  +EA+E+F 
Sbjct: 198 DSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFD 257

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKC 308
           +++  G+  + VT   VL A S    +  G +  + + + F +         ++D+  + 
Sbjct: 258 EMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRA 317

Query: 309 GSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           G L  +  + + M  E + I W A+L G   H 
Sbjct: 318 GRLNEAMELIEGMQMEPSSIVWVALLSGCRIHA 350



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L AC     LR G+++HA++++  +    +Y+   LI  Y K   +  AR +FD ++++N
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSWT++++ Y       EAL +F  M R   +P+  T   VL +C+ +   + G +  +
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292

Query: 184 LIIKSNFESHIYVG----SSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---Y 235
            + K   E  +  G    + ++D+  +AGR++EA  + E +  E   +   A++SG   +
Sbjct: 293 SMSK---EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIH 349

Query: 236 AQLGLDEEAIELFRKLQVE 254
           A + L E A +   +L  E
Sbjct: 350 ANVELGEHAAKQLLELNSE 368


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/524 (39%), Positives = 322/524 (61%), Gaps = 3/524 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F +M E     +  M+  + +  ++ EAL  +  M     +P+ FT+ T+L +CA 
Sbjct: 41  ACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACAR 100

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
               E G Q+H+ I+K   E+ ++V +SL+ MY K G I     VFE + ER V S +A+
Sbjct: 101 LPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSAL 160

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           I+ +A LG+  + + L   +  EG   +      SVL+A + L AL  G+ VH  +LR  
Sbjct: 161 ITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNV 220

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
               V+++ SLI+MY KCG L     +F  M+++  +S++ M+ G + HG GRE + +F 
Sbjct: 221 SGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFT 280

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M E+  ++PD + Y+ VL+ CSH G+   GL  F+ +   + G EP I+HYGC+VD++G
Sbjct: 281 EMLEQG-LEPDDIVYVGVLNACSHAGLVQEGLQCFNRM-KLEHGIEPTIQHYGCMVDLMG 338

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           RAG++ EALE IK+MP EP   +  SLL A +VH N+  GE   ++L +++ + A +YV+
Sbjct: 339 RAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVV 398

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSN+YA A RWEDV R R  M  K +++ PG S +E+ + +H F + D  HP  E +   
Sbjct: 399 LSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEM 458

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           + Q+  + K  GY PD + VL DVDEE+K++ L GHS+KLA+ + LI T +G+P+R+++N
Sbjct: 459 LYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRN 518

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR+C DCH + K +S ++ R++++RD++RFHH  +G CSC DYW
Sbjct: 519 LRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EMA  G++     Y TLL AC     +  G +VHAH++K      V+++  LI  Y KC 
Sbjct: 78  EMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCG 137

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
            +     +F++M ER+V SW+A+I+A++      + L L   M         E    +VL
Sbjct: 138 EIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVL 197

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++C      +LG+ +H  ++++    ++ V +SL++MY K G +++   +F+ + +++ +
Sbjct: 198 SACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKL 257

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S + +ISG A  G   E + +F ++  +G+  + + Y  VL A S    +  G Q  + +
Sbjct: 258 SYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRM 317

Query: 287 -LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
            L   I   +     ++D+  + G +  +  +  +M  E   + W ++L     H
Sbjct: 318 KLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 372



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKA--GRIHEARGVFECLPERDVVSCTAIISGYA 236
           KQ H+ I+K       +  S+L+   A +  G +  A  +F  + E        ++ G+ 
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           +    EEA+  ++++   G+  +  TY ++L A + L A+  G QVH+H+L+  + + V 
Sbjct: 65  KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 124

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +QNSLI MY KCG +     VF+ M+ER+V SW+A++  ++  GM  + + L   M  E 
Sbjct: 125 VQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEG 184

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
             + +    ++VLS C+H G  D G +V
Sbjct: 185 YWRAEESILVSVLSACTHLGALDLGRSV 212


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 347/593 (58%), Gaps = 5/593 (0%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            K L E+  +G  M    + + L AC N   L   + VHA +I   +   + +   L+  Y
Sbjct: 1135 KILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMY 1194

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTF 162
             K   + +A+K+   M + + V+W A+I  +++     EA+  + +++R    P N  T 
Sbjct: 1195 GKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITM 1253

Query: 163  ATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             +VL +C+      + G  IH+ I+ + FES  YV +SL+ MYAK G ++ +  +F+ L 
Sbjct: 1254 VSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG 1313

Query: 222  ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
             +  ++  A+++  A  G  EEA+++F +++  G+  +  +++  L A + LA L  G+Q
Sbjct: 1314 NKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQ 1373

Query: 282  VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
            +H  V++    S + + N+ +DMY KCG +    ++      R+ +SWN ++  +++HG 
Sbjct: 1374 LHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGC 1433

Query: 342  GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             ++  E F+ M +    KPD VT++++LS C+HGG+ D GLA +  +   + G  P IEH
Sbjct: 1434 FQKARETFHEMLKLGP-KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTR-EFGVFPGIEH 1491

Query: 402  YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
              C++D+LGR+GR+  A  FIK MP  P      SLL ACR+H N+++     + L+E++
Sbjct: 1492 CVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELD 1551

Query: 462  PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
            P +   YV+ SN+ A++G+WEDV  +R+ M    + K P  SW++L   +H+F   ++ H
Sbjct: 1552 PSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYH 1611

Query: 522  PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
            P    +SAK+ +L    KEAGYVPD S  L+D+DEEQKE  L  HSE+LAL FGLI TPE
Sbjct: 1612 PQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPE 1671

Query: 582  GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             + +R+ KNLR+C DCH+  KFVS + GRK+ LRD  RFHH   G CSCGDYW
Sbjct: 1672 SSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 285/492 (57%), Gaps = 17/492 (3%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  KA +   +M   G++     Y + L AC + R L  G +V   + K  +   +++
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFV 168

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
           ++ L+ F++KC  + DA  +F  M ER+VVSW AMI  Y+ +  + ++  +F  MLR   
Sbjct: 169 KSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGL 228

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P+ +T  +VL + A   G  +  QIH +I +  + S+  V   L++ YAK G +  A+ 
Sbjct: 229 VPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 288

Query: 216 VFECLPERDVVSCTAIISGYAQLGL-DEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
           + + + ++D+ S TA+I+GYA  G+   +A++LF+++    +  + V   S+L   + LA
Sbjct: 289 LRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLA 348

Query: 275 ALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           +   G Q+H+  L+++ PSY V + N+LIDMY+K G +  ++R FD M E+ VISW +++
Sbjct: 349 SFALGTQIHAFALKYQ-PSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLI 407

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY+KHG G   V L+  M E    KP+ VT+L++L  CSH G+   G   F+ +V+ K 
Sbjct: 408 SGYAKHGYGHMAVSLYKKM-ESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVN-KY 465

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
             +P  EHY C+VD+  R G + EA   +  +  +  A++ G++LGA  ++  + +G+  
Sbjct: 466 NIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEA 525

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
              L  ++PEN+ NYV+L+++Y++AG W+D  ++R+LM+E++  K+ G S+         
Sbjct: 526 ASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSF--------- 576

Query: 514 FHASDRSHPMRE 525
           F A+ +S P+ +
Sbjct: 577 FQATKKSIPLLQ 588



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 209/389 (53%), Gaps = 8/389 (2%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           +++ C+ G+L +AL  +++    +    Y  +L  C++++  + G  +H H+I   +   
Sbjct: 5   IQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSD 64

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           ++L T+LI+FY K   +  AR +FD M ER+VVSWTAM+S YSQ     +A  LF  M  
Sbjct: 65  LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRH 124

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              + N+FT+ + L +C      ++G Q+   I K  F  +++V S+L+D ++K G++ +
Sbjct: 125 CGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMED 184

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F  + ERDVVS  A+I GYA  G  +++  +FR +   G++ +  T  SVL A + 
Sbjct: 185 ASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAE 244

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
              L    Q+H  + +    SY ++   LI+ Y+K GSL  ++ +   M ++ + S  A+
Sbjct: 245 GGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTAL 304

Query: 333 LVGYSKHGM-GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           + GY+  G+   + ++LF  M + N +  D V   ++L+ C++        A+  +I   
Sbjct: 305 ITGYAHEGIYSVDALDLFKEMNQMN-IGMDDVILCSMLNICANLA----SFALGTQIHAF 359

Query: 392 KDGFEP--EIEHYGCVVDMLGRAGRVGEA 418
              ++P  ++     ++DM  ++G + +A
Sbjct: 360 ALKYQPSYDVAMGNALIDMYAKSGEIEDA 388



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 160/278 (57%), Gaps = 1/278 (0%)

Query: 77   GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            G+ +HA  I       ++    LI  Y+K   +  AR +FDEMR RN  SW+ M+S Y +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 137  KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHIY 195
                 EA+ LF +M     EPN F  A+++T+C+   +  + G Q+H  ++K+     +Y
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 196  VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
            VG++L+  Y   G ++ A+ +FE +P+ +VVS T+++ GY+  G   E + ++++++ EG
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 256  MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            +  N  T+A+V ++   L     G QV  H++++     V + NSLI M+S   S+  + 
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 316  RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
             VFD+M+E  +ISWNAM+  Y+ HG+ RE +  F+ MR
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 1040



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 210/396 (53%), Gaps = 9/396 (2%)

Query: 48   EMATLGLEMRFEEYDTLLNACVNQRTLRG-GQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
            +M  LG+E       +L+ AC     +   G +VH  ++KT     VY+ T L+ FY   
Sbjct: 835  QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 894

Query: 107  ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
              + +A+K+F+EM + NVVSWT+++  YS   +  E LN++ RM +     N+ TFATV 
Sbjct: 895  GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVT 954

Query: 167  TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +SC       LG Q+   II+  FE  + V +SL+ M++    + EA  VF+ + E D++
Sbjct: 955  SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 1014

Query: 227  SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
            S  A+IS YA  GL  E++  F  ++     +N  T +S+L+  S +  L  G+ +H  V
Sbjct: 1015 SWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLV 1074

Query: 287  LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
            ++  + S V + N+L+ +YS+ G    +  VF  M+ER +ISWN+M+  Y + G   + +
Sbjct: 1075 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 1134

Query: 347  ELFNLMREENKVKPDSVTYLAVLSGCSHGG--MEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            ++   + +  KV  + VT+ + L+ CS+    +E +   + H ++    GF   +     
Sbjct: 1135 KILAELLQMGKVM-NHVTFASALAACSNPECLIESK---IVHALIIVA-GFHDFLIVGNA 1189

Query: 405  VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
            +V M G+ G + EA + ++ MP +P      +L+G 
Sbjct: 1190 LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 1224



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 40   GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
            G++      M   G+      + T+ ++C        G +V  H+I+  +   V +   L
Sbjct: 929  GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 100  IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
            I  ++    + +A  +FD M E +++SW AMISAY+      E+L  F  M     E N 
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 160  FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
             T +++L+ C+     + G+ IH L++K   +S++ + ++LL +Y++AGR  +A  VF+ 
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 1108

Query: 220  LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
            + ERD++S  ++++ Y Q G   + +++  +L   G + N+VT+AS L A S    L   
Sbjct: 1109 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 1168

Query: 280  KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
            K VH+ ++      ++++ N+L+ MY K G +  +++V   M +   ++WNA++ G++++
Sbjct: 1169 KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAEN 1228

Query: 340  GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMEDRGLAVFHEIVDCKDGFEPE 398
                E V+ + L+RE+  +  + +T ++VL  CS    +   G+ +   IV    GFE +
Sbjct: 1229 EEPNEAVKAYKLIREKG-IPANYITMVSVLGACSAPDDLLKHGMPIHAHIV--LTGFESD 1285

Query: 399  IEHYGCVVDMLGRAGRVGEA 418
                  ++ M  + G +  +
Sbjct: 1286 DYVKNSLITMYAKCGDLNSS 1305



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 167/357 (46%), Gaps = 47/357 (13%)

Query: 178  GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            GK +H+  I  +    I+  ++L++MY+K G I  AR VF+ +  R+  S + ++SGY +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 238  LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG-HGKQVHSHVLRFEIPSYVV 296
            +GL EEA+ LF ++   G+  N    AS++TA S    +   G QVH  V++  I   V 
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 297  LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
            +  +L+  Y   G +  ++++F+ M +  V+SW +++VGYS  G   EV+ ++  MR+E 
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 357  KVKPDSVTYLAVLSGCSHGGMEDR--GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
             V  +  T+  V S C  G +ED+  G  V   I+  + GFE  +     ++ M      
Sbjct: 943  -VSGNQNTFATVTSSC--GLLEDQVLGYQVLGHII--QYGFEDSVSVANSLISMFSSFSS 997

Query: 415  VGEALEFIKNM---PFEPTAAILGSLL--GACR-----VHY------------------- 445
            V EA     +M         A++ +    G CR      H+                   
Sbjct: 998  VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 1057

Query: 446  -----NVDIGEFVGQRLMEIEPENAGNYVI---LSNLYASAGRWEDVTRVRELMKEK 494
                 N+  G  +   ++++  ++  N  I   L  LY+ AGR ED   V + M E+
Sbjct: 1058 CSSVDNLKWGRGIHGLVVKLGLDS--NVCICNTLLTLYSEAGRSEDAELVFQAMTER 1112



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L   S + +   GK +H+  +   +   +   N+LI+MYSK G++ ++R VFD M  R  
Sbjct: 751 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG-MEDRGLAVF 385
            SW+ ML GY + G+  E V LF  M     V+P+     ++++ CS  G M D G  V 
Sbjct: 811 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACSRSGYMADEGFQVH 869

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +V  K G   ++     +V   G  G V  A +  + MP
Sbjct: 870 GFVV--KTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 908


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/638 (35%), Positives = 358/638 (56%), Gaps = 45/638 (7%)

Query: 32  NLKTLC-SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR 90
           NL  +C S G   +   E   L L      ++TLL   V    +   +RV   M +    
Sbjct: 148 NLYAVCGSVGSARRVFEESPVLDLV----SWNTLLAGYVQAGEVEEAERVFEGMPER--- 200

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFI 148
                   +I  + +  C+  AR++F+ +R  ER++VSW+AM+S Y Q     EAL LF+
Sbjct: 201 -NTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFV 259

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            M  S    +E    + L++C+     E+G+ +H L +K   E ++ + ++L+ +Y+  G
Sbjct: 260 EMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCG 319

Query: 209 RIHEARGVFE--------------------------------CLPERDVVSCTAIISGYA 236
            I +AR +F+                                 +PE+DVVS +A+ISGYA
Sbjct: 320 EIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYA 379

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           Q     EA+ LF+++Q+ G+  +     S ++A + LA L  GK +H+++ R ++   V+
Sbjct: 380 QHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVI 439

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           L  +LIDMY KCG +  +  VF  M E+ V +WNA+++G + +G   + + +F  M++  
Sbjct: 440 LSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTG 499

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            V P+ +T++ VL  C H G+ + G   F+ ++  +   E  I+HYGC+VD+LGRAG + 
Sbjct: 500 TV-PNEITFMGVLGACRHMGLVNDGRHYFNSMIH-EHKIEANIKHYGCMVDLLGRAGLLK 557

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           EA E I +MP  P  A  G+LLGACR H + ++GE +G++L++++P++ G +V+LSN+YA
Sbjct: 558 EAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYA 617

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S G W +V  +R +M +  V K PG S IE +  +H F A D++HP   ++   +  ++ 
Sbjct: 618 SKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAA 677

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           K K  GYVP  S V  D+DEE+KE  L  HSEKLA+ FGLI      PIRV KNLRIC D
Sbjct: 678 KLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICND 737

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K +SK + R + +RD++RFHH   G CSC D+W
Sbjct: 738 CHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 48/304 (15%)

Query: 56  MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD---A 112
           M+    D+LL +C   R  +   ++ +  I T      Y  +RLI F +    L     +
Sbjct: 1   MKVSTLDSLLQSCKCPRHFK---QLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYS 57

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHS-FEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
            ++F+ +R  N  +W  ++ A+    +S  +AL  +   L S  +P+ +T+  +L  CA 
Sbjct: 58  LRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 G+Q+H+  + S F+  +YV ++L+++YA  G +  AR VFE  P  D+VS   +
Sbjct: 118 RVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           ++GY Q G  EEA  +F  +     I++                                
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPERNTIAS-------------------------------- 205

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMGREVVELF 349
                  NS+I ++ + G +  +RR+F+ +   ER ++SW+AM+  Y ++ MG E + LF
Sbjct: 206 -------NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLF 258

Query: 350 NLMR 353
             M+
Sbjct: 259 VEMK 262



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 26/338 (7%)

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI---HEARGVF 217
           T  ++L SC     F   KQ+ S  I +   +  Y  S L++  + +  +   H +  +F
Sbjct: 5   TLDSLLQSCKCPRHF---KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIF 61

Query: 218 ECLPERDVVSCTAIISGYAQL-GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
             L   +  +   I+  +  L     +A+  ++         +  TY  +L   +   + 
Sbjct: 62  NHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSE 121

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+Q+H+H +       V ++N+L+++Y+ CGS+  +RRVF+      ++SWN +L GY
Sbjct: 122 FEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGY 181

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            + G   E   +F  M E N +  +S+  L    GC      ++   +F+ +     G E
Sbjct: 182 VQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCV-----EKARRIFNGV----RGRE 232

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEF---IKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
            ++  +  +V    +     EAL     +K         ++ S L AC    NV++G +V
Sbjct: 233 RDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWV 292

Query: 454 GQRLMEIEPENAGNYVILSN----LYASAGRWEDVTRV 487
               +++  E   +YV L N    LY+S G   D  R+
Sbjct: 293 HGLAVKVGVE---DYVSLKNALIHLYSSCGEIVDARRI 327


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 354/613 (57%), Gaps = 46/613 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---------VFYNKCECLSDAR 113
            LL +C +   L+    +H  +++T     V++ +RL+          F+     L  A 
Sbjct: 17  ALLQSCSSFSDLK---IIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAY 73

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
            +F +++  N+  +  +I  +S  A   +A   + +ML+S   P+  TF  ++ +     
Sbjct: 74  GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEME 133

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              +G+Q HS I++  F++ +YV +SL+ MYA  G I  A  +F  +P RDVVS T++++
Sbjct: 134 CVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVA 193

Query: 234 GYAQLGLDEEA-------------------------------IELFRKLQVEGMISNYVT 262
           GY + G+ E+A                               I+LF  ++ EG+++N   
Sbjct: 194 GYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETV 253

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             SV+++ + L AL  G++ H +V++  +   ++L  +L+DMY +CG +  + RVF+ + 
Sbjct: 254 MVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELP 313

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           ++  +SW++++ G + HG   + +  F+ M       P  +T  AVLS CSHGG+ D+GL
Sbjct: 314 DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLG-FSPRDITLTAVLSACSHGGLVDKGL 372

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            ++ E +    G EP +EHYGC+VDMLGRAG++ EA  FI  MP +P A ILG+LLGAC+
Sbjct: 373 EIY-ENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACK 431

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           ++ N ++ E VG  L+E++PE++G YV+LSN+YA AG+WE +  +R++MKEK V K PG 
Sbjct: 432 IYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGW 491

Query: 503 SWIELDQILHTFH-ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEK 561
           S IE+D  ++ F    D+ HP   ++    +++  K +  GY  +     +DVDEE+KE 
Sbjct: 492 SLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKET 551

Query: 562 VLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFH 621
            +  HSEKLA+ +G++ T  G  IR++KNLR+C DCH   K +S+VYGR+  +RD+NRFH
Sbjct: 552 AIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFH 611

Query: 622 HIVEGTCSCGDYW 634
           H   G CSC DYW
Sbjct: 612 HFRNGLCSCRDYW 624


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 334/552 (60%), Gaps = 37/552 (6%)

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +F +  + ++  +TA I+  S      +A  L++++L S   PNEFTF+++L SC+    
Sbjct: 84  LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCST--- 140

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS- 233
            + GK IH+ ++K       YV + L+D+YAK G +  A+ VF+ +PER +VS TA+I+ 
Sbjct: 141 -KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITC 199

Query: 234 ------------------------------GYAQLGLDEEAIELFRKLQVEGMIS-NYVT 262
                                         GY+Q G   +A+ LF+KL  +G    + +T
Sbjct: 200 YAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEIT 259

Query: 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
             + L+A S + AL  G+ +H  V    I   V +  +LIDMYSKCGSL  +  VF++  
Sbjct: 260 VVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTP 319

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
            + +++WNAM+ GY+ HG  ++ + LF+ M+    ++P  +T++  L  C+H G+ + G+
Sbjct: 320 RKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGI 379

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
            +F E +  + G +P+IEHYGC+V +LGRAG++  A E IKNM  E  + +  S+LG+C+
Sbjct: 380 QIF-ESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCK 438

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           +H    +G+ + + L+     N+G YV+LSN+YA  G +E V +VR LMKEK + K+PG 
Sbjct: 439 LHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGI 498

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKV 562
           S IE+D  +H F A DR H   +E+   ++++S + K  GYVP+ + VL+D++E +KE+ 
Sbjct: 499 STIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERS 558

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           L  HSE+LA+ +GLI T  G+P+++ KNLR+C DCH   K +SK+ GRK+ +RD+NRFHH
Sbjct: 559 LQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHH 618

Query: 623 IVEGTCSCGDYW 634
             +G+CSC D+W
Sbjct: 619 FSDGSCSCDDFW 630



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 7/258 (2%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DT 155
           T +I  Y K   +  AR +FD M ER++VSW  MI  YSQ     +AL LF ++L     
Sbjct: 194 TAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKP 253

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+E T    L++C+     E G+ IH  +  S    ++ V ++L+DMY+K G + EA  
Sbjct: 254 KPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVL 313

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLA 274
           VF   P +D+V+  A+I+GYA  G  ++A+ LF ++Q + G+    +T+   L A +   
Sbjct: 314 VFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAG 373

Query: 275 ALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAM 332
            +  G Q+  S    + I   +     L+ +  + G L  +  +  NM+ E   + W+++
Sbjct: 374 LVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSV 433

Query: 333 LVGYSKHG---MGREVVE 347
           L     HG   +G+E+ E
Sbjct: 434 LGSCKLHGEFMLGKEIAE 451



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 40/303 (13%)

Query: 180 QIHSLIIKSNFESHI---YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           QIH+ I++ N   H     +   L   YA  G+I  +  +F    + D+   TA I+  +
Sbjct: 45  QIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 104

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
             GL ++A  L+ +L    +  N  T++S+L + S  +    GK +H+HVL+F +     
Sbjct: 105 INGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPY 160

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERT------------------------------- 325
           +   L+D+Y+K G +  +++VFD M ER+                               
Sbjct: 161 VATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERD 220

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           ++SWN M+ GYS+HG   + + LF  +  + K KPD +T +A LS CS  G  + G  + 
Sbjct: 221 IVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWI- 279

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           H  V+        ++    ++DM  + G + EA+    + P +   A    + G     Y
Sbjct: 280 HVFVNSSR-IRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGY 338

Query: 446 NVD 448
           + D
Sbjct: 339 SQD 341



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 14/218 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     L  G+ +H  +  +  R  V + T LI  Y+KC  L +A  +F++   +++
Sbjct: 264 LSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDI 323

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLR-SDTEPNEFTFATVLTSCAGAFGFELGKQI-H 182
           V+W AMI+ Y+   +S +AL LF  M   +  +P + TF   L +CA A     G QI  
Sbjct: 324 VAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFE 383

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQL 238
           S+  +   +  I     L+ +  +AG++  A  + + +  E D V  ++++     + + 
Sbjct: 384 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEF 443

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
            L +E  E         +I   ++ + +   LS + AL
Sbjct: 444 MLGKEIAEY--------LIGQNISNSGIYVLLSNIYAL 473


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/605 (36%), Positives = 343/605 (56%), Gaps = 39/605 (6%)

Query: 33  LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +++  +NG    AL+    MA  G       Y  +L AC     L  G ++H  ++K   
Sbjct: 109 IRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGL 168

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +Y+   L+  Y KC+ L  AR++ DEM  R++VSW +M++ Y+Q     +AL L   
Sbjct: 169 DMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCRE 228

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M     +P+  T  ++L +                +  ++ ++ +YV     DM+ K   
Sbjct: 229 MEDLKLKPDAGTMGSLLPA----------------VTNTSCDNVLYVK----DMFVK--- 265

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                     L E+ ++S   +I+ Y    +  EA++L+ ++QV G+  + V+ +SVL A
Sbjct: 266 ----------LKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPA 315

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
              L+A   G+++H +V R ++   ++L+N+LIDMY+KCG L  +R VFD M  R V+SW
Sbjct: 316 CGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSW 375

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            +M+  Y   G G++ V LF  MR+     PD + +++VL+ CSH G+ D G   F+ + 
Sbjct: 376 TSMISAYGMSGQGKDAVALFKKMRDSG-FTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA 434

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           +   G  P IEHY C+VD+LGRAG++ EA    + MP EP   + GSLL ACRV+ +++I
Sbjct: 435 EY--GITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNI 492

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
                  L ++ PE +G YV+LSN+YA AGRW+DV  VR +M  K + K PG S +E++ 
Sbjct: 493 ALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEIND 552

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            ++TF A D+SH   +E+   +  L  + KE GY+P+    L+DV+EE KE  L  HSEK
Sbjct: 553 HVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEK 612

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ F ++ T  G+ IR+ KN+R+C DCH   K +SK+  R++ +RD +RFHH  +G CS
Sbjct: 613 LAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCS 672

Query: 630 CGDYW 634
           CGDYW
Sbjct: 673 CGDYW 677



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 176/371 (47%), Gaps = 48/371 (12%)

Query: 62  DTLLNACVNQRTLRGGQRVHAH-MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +L+   + +TL+   ++H+  +I     P   L  +L+  Y  C      R +FDE+ 
Sbjct: 42  NKILDVNPDAKTLK---KLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEIT 98

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ++NVV +  MI +Y       +AL +F  M      P+ +T+  VL +C+ +    +G Q
Sbjct: 99  DKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQ 158

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  ++K   + ++Y+G+ L+ MY K   +  AR V + +P RD+VS  ++++GYAQ G 
Sbjct: 159 IHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGR 218

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             +A++L R+++   +  +  T  S+L A++                             
Sbjct: 219 FNDALKLCREMEDLKLKPDAGTMGSLLPAVTN---------------------------- 250

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
                + C ++ Y + +F  + E+++ISWN M+  Y  + M  E V+L+ L  + + V+P
Sbjct: 251 -----TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLY-LQMQVHGVEP 304

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVF----HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
           D+V+  +VL  C      D   AV     HE V+ K    P +     ++DM  + G + 
Sbjct: 305 DAVSISSVLPACG-----DLSAAVLGRRIHEYVERKK-LRPNLLLENALIDMYAKCGCLK 358

Query: 417 EALEFIKNMPF 427
           EA      M F
Sbjct: 359 EARAVFDQMMF 369



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 17/271 (6%)

Query: 179 KQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           K++HS ++I  N   +  +G  L+  YA  G     R +F+ + +++VV    +I  Y  
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL ++A+ +F+ +  +G   +  TY  VL A S    L  G Q+H  V++  +   + +
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N L+ MY KC  L  +RRV D M  R ++SWN+M+ GY+++G   + ++L   M E+ K
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREM-EDLK 233

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF----EPEIEHYGCVVDMLGRAG 413
           +KPD+ T  ++L   ++   ++        ++  KD F    E  +  +  ++ +     
Sbjct: 234 LKPDAGTMGSLLPAVTNTSCDN--------VLYVKDMFVKLKEKSLISWNVMIAVYVNNA 285

Query: 414 RVGEALEFIKNMP---FEPTAAILGSLLGAC 441
              EA++    M     EP A  + S+L AC
Sbjct: 286 MPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/580 (36%), Positives = 334/580 (57%), Gaps = 50/580 (8%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           +M  E YD L++AC+  +++RG ++V  +MI +   P  YLR R+++ + KC  + DAR+
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM E+N++SW  +I         FEA  LF+ M +  ++     F T++ + AG   
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGL 247

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
              G+Q+HS  +K+     ++V  +L+DMY+K G I +A+ VF+ +PE+  V   +II+G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
           YA  G  EEA+ ++ +++  G+  +  T++ ++   + LA+L H KQ H+ ++R      
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           +V   +L+D+YSK G +  ++ VFD M  + VISWNA++ GY  HG G E VE+F  M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  V P+ VT+LAVLS CS+ G+ DRG  +F E +      +P   HY C++++LGR G 
Sbjct: 428 EGMV-PNHVTFLAVLSACSYSGLSDRGWEIF-ESMSRDHKIKPRAMHYACMIELLGREGL 485

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           + EA   IK+ PF+PT  +  +LL ACRVH N ++G+F  ++L  + PE   NYV+L N+
Sbjct: 486 LDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           Y  +GR E+                                                  L
Sbjct: 546 YNRSGRLEEAA-----------------------------------------------AL 558

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
            ++  + GYVP    +L DVD EQ+E+VLL HSEKLA+ FGLI T +  P++++++ RIC
Sbjct: 559 MLEISKHGYVPQDKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRIC 617

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCH+  K ++ V  R++ +RD +RFHH  +G+CSCGDYW
Sbjct: 618 GDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 657



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+++    +  ++  C    +L   ++ HA +++  +   +   T L+  Y+K  
Sbjct: 323 EMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWG 382

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA+ +FD M  +NV+SW A+I+ Y       EA+ +F RML     PN  TF  VL+
Sbjct: 383 RIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLS 442

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +C+ +   + G +I  S+      +      + ++++  + G + EA  + +  P +  V
Sbjct: 443 ACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502

Query: 227 SCTAII 232
           +  A +
Sbjct: 503 NMWAAL 508


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 319/525 (60%), Gaps = 12/525 (2%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCA 170
           AR++F  M  R+V SW  M+S  S+     EA  +F+ M +R+    N         +C+
Sbjct: 99  ARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGF---ACS 155

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
           G                +  +    + ++++  Y   G + +A   FE +P R++VS  A
Sbjct: 156 GDM-----STAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNA 210

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
           +++GY +    ++A+ LFR +  E  +  N  T +SVL   S L+ALG GKQ+H   ++ 
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKL 270

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            +   + +  SL+ MY KCG L+ +  +F  M  R V++WNAM+ GY++HG G+E + LF
Sbjct: 271 LLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLF 330

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M++E  V+P+ +T++ VL+ C H G+ D G+  F  + +   G EP ++HY C+VD+L
Sbjct: 331 ERMKDEG-VEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELY-GIEPRVDHYSCMVDLL 388

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            RAG++  A++FI++MPFEP  +  G+LL ACRV+ N++  E    +L+E +P++AG YV
Sbjct: 389 CRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYV 448

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
            L+N+YA A +W+DV+RVR  MK+  V K PG SWIE+  +LH F ++DR HP    +  
Sbjct: 449 QLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHE 508

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
           K+ QL+ + KE GYVPD+  VL+DVDE  K ++L+ HSEKLA+ FGLI T  G  +R+ K
Sbjct: 509 KLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFK 568

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCHN AK +S +  R++ LRD  RFHH   G CSC DYW
Sbjct: 569 NLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G+++H   +K      + + T L+  Y KC  LS A  +F EM  R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR 305

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA----FGFELG 178
           +VV+W AMIS Y+Q     EA+NLF RM     EPN  TF  VLT+C       FG +  
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCF 365

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + +  L      E  +   S ++D+  +AG++  A      +P
Sbjct: 366 EGMQELY---GIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/533 (40%), Positives = 325/533 (60%), Gaps = 10/533 (1%)

Query: 109 LSDARKMFDEMRERNVVSW-TAMISAYSQKAHSFEA-----LNLFIRMLRSDTEPNEFTF 162
           L+ AR++FD + + +   W   ++  Y++ + S  +     + +F+RML     P+ +TF
Sbjct: 77  LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTF 136

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            ++L +CA A   E G+Q H++ +K     H YV  +L++MYA+ G    AR  F     
Sbjct: 137 VSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADG 196

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
             VVS  A+I+   +     EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ +
Sbjct: 197 DCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWL 256

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H +V +  + S V +  +L+DMY+KCGSL  +  VF  M  R   +W+ M+V Y+ HG G
Sbjct: 257 HDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYG 316

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
           RE + LF  M+++  +KPD +T+L +L  CSH G+   GL  F ++ D   G  P I+HY
Sbjct: 317 REAISLFEEMKKQG-MKPDDITFLGLLYACSHSGLVSEGLRYFDDMKD--HGIVPGIKHY 373

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
           GCV D+L R+G++  A +FI  +P  PT  +  +LL AC  H +V++G+ V +R++E++ 
Sbjct: 374 GCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELDD 433

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
            + G+YVI SNL A+ G WE++ RVR+LM +K V K PG S IE+D  +H F A D  HP
Sbjct: 434 SHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHP 493

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
             +E    V ++  + K  GY+PD S V + ++ EE+K   L  HSEKLA+ FGL+ T  
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAP 553

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GA +RV+KNLR+C DCH+ AKFVS V+ R++ LRD NRFHH   G CSCGDYW
Sbjct: 554 GATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 4/309 (1%)

Query: 43  TKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
            +  + M   G+      + +LL AC   R    G++ HA  +K       Y+R  LI  
Sbjct: 118 VRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINM 177

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y +C     AR  F       VVS+ AMI+A  + +   EAL LF  M      P   T 
Sbjct: 178 YAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTV 237

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            +VL++CA     +LG+ +H  + K    S + V ++L+DMYAK G + +A  VF+ +  
Sbjct: 238 ISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMES 297

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           RD  + + +I  YA  G   EAI LF +++ +GM  + +T+  +L A S    +  G + 
Sbjct: 298 RDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRY 357

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG- 340
              +    I   +     + D+ ++ G L  + +  D +    T I W  +L     HG 
Sbjct: 358 FDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGD 417

Query: 341 --MGREVVE 347
             +G+ V E
Sbjct: 418 VELGKRVFE 426


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/528 (41%), Positives = 334/528 (63%), Gaps = 19/528 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS--- 168
           A+  FD M  ++  SW  MI+ Y+++    +A  LF  M+    E NE ++  +++    
Sbjct: 143 AQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM----EKNEVSWNAMISGYIE 198

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVS 227
           C      +L K  H    K      +   ++++  Y KA ++  A  +F+ +   +++V+
Sbjct: 199 CG-----DLEKASH--FFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISGY +    E+ ++LFR +  EG+  N    +S L   S L+AL  G+Q+H  V 
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +  + + V    SLI MY KCG L  + ++F+ M ++ V++WNAM+ GY++HG   + + 
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALC 371

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEPEIEHYGCVV 406
           LF  M + NK++PD +T++AVL  C+H G+ + G+A F  +V D K   EP+ +HY C+V
Sbjct: 372 LFREMID-NKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYK--VEPQPDHYTCMV 428

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+LGRAG++ EAL+ I++MPF P AA+ G+LLGACRVH NV++ EF  ++L+++  +NA 
Sbjct: 429 DLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAA 488

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
            YV L+N+YAS  RWEDV RVR+ MKE  V K PG SWIE+   +H F +SDR HP  + 
Sbjct: 489 GYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDS 548

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           +  K+K+L  K K AGY P++   L++V+EEQKEK+LL HSEKLA+ FG I  P+G+ I+
Sbjct: 549 IHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQ 608

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           V KNLRIC DCH   KF+S++  R++ +RD  RFHH  +G+CSCGDYW
Sbjct: 609 VFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + L  C     L+ G+++H  + K+     V   T LI  Y KC  L DA K+F+ M+++
Sbjct: 289 SALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKK 348

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQI 181
           +VV+W AMIS Y+Q  ++ +AL LF  M+ +   P+  TF  VL +C  A    +G    
Sbjct: 349 DVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYF 408

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG----YAQ 237
            S++     E      + ++D+  +AG++ EA  +   +P R   +    + G    +  
Sbjct: 409 ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKN 468

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
           + L E A E   +L  +   + YV  A++  + +    +   ++        ++P Y   
Sbjct: 469 VELAEFAAEKLLQLNSQNA-AGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGY--- 524

Query: 298 QNSLIDMYSKCGSLTYSRRV 317
             S I++ +K      S R+
Sbjct: 525 --SWIEIRNKVHHFRSSDRI 542



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 150/342 (43%), Gaps = 53/342 (15%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQK-AHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           +  A ++F  MR +N ++W +++   S+  +   EA  LF  +     EP+ F++  ++ 
Sbjct: 77  IDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI----PEPDTFSY-NIML 131

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           SC                                  Y +     +A+  F+ +P +D  S
Sbjct: 132 SC----------------------------------YVRNVNFEKAQSFFDRMPFKDAAS 157

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              +I+GYA+ G  E+A ELF  +    M  N V++ ++   +SG    G  ++  SH  
Sbjct: 158 WNTMITGYARRGEMEKARELFYSM----MEKNEVSWNAM---ISGYIECGDLEKA-SHFF 209

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVV 346
           +      VV   ++I  Y K   +  +  +F +M+  + +++WNAM+ GY ++    + +
Sbjct: 210 KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           +LF  M EE  ++P+S    + L GCS       G  + H+IV  K     ++     ++
Sbjct: 270 KLFRAMLEEG-IRPNSSGLSSALLGCSELSALQLGRQI-HQIVS-KSTLCNDVTALTSLI 326

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            M  + G +G+A +  + M  +   A   +++     H N D
Sbjct: 327 SMYCKCGELGDAWKLFEVMKKKDVVA-WNAMISGYAQHGNAD 367



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           II+   + G  + A+ +F  ++ +    N +T+ S+L  +S        + + +H L  E
Sbjct: 67  IIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISK----DPSRMMEAHQLFDE 118

Query: 291 IPSYVVLQ-NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           IP       N ++  Y +  +   ++  FD M  +   SWN M+ GY++ G   +  ELF
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELF 178

Query: 350 NLMREENKVKPDSVTYLAVLSG 371
             M E+N+     V++ A++SG
Sbjct: 179 YSMMEKNE-----VSWNAMISG 195


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/458 (41%), Positives = 305/458 (66%), Gaps = 1/458 (0%)

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           LG+ IHS++I+S F S IYV +SLL +YA  G +  A  VF+ +PE+D+V+  ++I+G+A
Sbjct: 6   LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           + G  EEA+ L+ ++  +G+  +  T  S+L+A + + AL  GK+VH ++++  +   + 
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
             N L+D+Y++CG +  ++ +FD M ++  +SW +++VG + +G G+E +ELF  M    
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 185

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            + P  +T++ +L  CSH GM   G   F  + + +   EP IEH+GC+VD+L RAG+V 
Sbjct: 186 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-EYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
           +A E+IK+MP +P   I  +LLGAC VH + D+ EF   +++++EP ++G+YV+LSN+YA
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 304

Query: 477 SAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSV 536
           S  RW DV ++R+ M    V K PG S +E+   +H F   D+SHP  + + AK+K+++ 
Sbjct: 305 SEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTG 364

Query: 537 KFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVD 596
           + +  GYVP +S V  DV+EE+KE  ++ HSEK+A+ F LI TPE +PI V+KNLR+C D
Sbjct: 365 RLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCAD 424

Query: 597 CHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           CH   K VSKVY R++ +RD++RFHH   G+CSC DYW
Sbjct: 425 CHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 152/270 (56%), Gaps = 3/270 (1%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           +R G+ +H+ +I++ +   +Y++  L+  Y  C  ++ A K+FD+M E+++V+W ++I+ 
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +++     EAL L+  M     +P+ FT  ++L++CA      LGK++H  +IK     +
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ- 252
           ++  + LLD+YA+ GR+ EA+ +F+ + +++ VS T++I G A  G  +EAIELF+ ++ 
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSL 311
            EG++   +T+  +L A S    +  G +    +   ++I   +     ++D+ ++ G +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 312 TYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
             +     +M  +  V+ W  +L   + HG
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACTVHG 273



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 12/236 (5%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +     NG+  +AL    EM + G++       +LL+AC     L  G+RVH +MIK   
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              ++    L+  Y +C  + +A+ +FDEM ++N VSWT++I   +      EA+ LF  
Sbjct: 121 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 180

Query: 150 MLRSD-TEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
           M  ++   P E TF  +L +C+       GFE  +++     +   E  I     ++D+ 
Sbjct: 181 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE---EYKIEPRIEHFGCMVDLL 237

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260
           A+AG++ +A    + +P +  V     + G   +  D +  E F ++Q+  +  N+
Sbjct: 238 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE-FARIQILQLEPNH 292


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 347/607 (57%), Gaps = 13/607 (2%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG L  +L    EM   G+      + T L AC     L  G ++H   +K  +   V +
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y+KC  +++A K+F  + +R+++SW AMI+ +    +  +AL+ F  M  ++ 
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANI 204

Query: 156 E--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--SHIYVGSSLLDMYAKAGRIH 211
           +  P+EFT  ++L +C+       GKQIH  +++S F   S   +  SL+D+Y K G + 
Sbjct: 205 KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLF 264

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            AR  F+ + E+ ++S +++I GYAQ G   EA+ LF++LQ      +    +S++   +
Sbjct: 265 SARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFA 324

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
             A L  GKQ+ +  ++        + NS++DMY KCG +  + + F  M  + VISW  
Sbjct: 325 DFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 384

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ GY KHG+G++ V +F  M   N ++PD V YLAVLS CSH GM   G  +F ++++ 
Sbjct: 385 VITGYGKHGLGKKSVRIFYEMLRHN-IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE- 442

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G +P +EHY CVVD+LGRAGR+ EA   I  MP +P   I  +LL  CRVH ++++G+
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 502

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            VG+ L+ I+ +N  NYV++SNLY  AG W +    REL   K + K+ G SW+E+++ +
Sbjct: 503 EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
           H F + + SHP+   +   +K+   + +E  GYV  +   L+D+D+E KE+ L  HSEKL
Sbjct: 563 HFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKL 622

Query: 571 ALTFGLIG---TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           A+   L       +G  IRV KNLR+CVDCH F K +SK+      +RD  RFH   +G 
Sbjct: 623 AIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGC 682

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 683 CSCGDYW 689



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 193/361 (53%), Gaps = 9/361 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C  +     G +VH +++K+     +     LI  Y KC     A K+FD M ER
Sbjct: 11  SILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER 70

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVVSW+A++S +        +L+LF  M R    PNEFTF+T L +C      E G QIH
Sbjct: 71  NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIH 130

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
              +K  FE  + VG+SL+DMY+K GRI+EA  VF  + +R ++S  A+I+G+   G   
Sbjct: 131 GFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGS 190

Query: 243 EAIELFRKLQVEGMIS---NYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVL 297
           +A++ F  +Q E  I    +  T  S+L A S    +  GKQ+H  ++R  F  PS   +
Sbjct: 191 KALDTFGMMQ-EANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 249

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             SL+D+Y KCG L  +R+ FD + E+T+ISW+++++GY++ G   E + LF  ++E N 
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS 309

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
            + DS    +++   +   +  +G  +    V    G E  +     VVDM  + G V E
Sbjct: 310 -QIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV--LNSVVDMYLKCGLVDE 366

Query: 418 A 418
           A
Sbjct: 367 A 367


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 338/573 (58%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y + + L  AR++ + M +   V+W AMIS Y  +    EA +L  RM     +
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHE 212
            +E+T+ +V+++ + A  F +G+Q+H+ ++++  +      + V ++L+ +Y + G++ E
Sbjct: 272 LDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 213 ARGVFECLPERDVVSCTAI-------------------------------ISGYAQLGLD 241
           AR VF+ +P +D+VS  AI                               ISG AQ G  
Sbjct: 332 ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFG 391

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EE ++LF ++++EG+      YA  + + S L +L +G+Q+HS +++    S + + N+L
Sbjct: 392 EEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNAL 451

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MYS+CG +  +  VF  M     +SWNAM+   ++HG G + ++L+  M +E+ + PD
Sbjct: 452 ITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKED-ILPD 510

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+L +LS CSH G+   G   F  +  C  G  PE +HY  ++D+L RAG   EA   
Sbjct: 511 RITFLTILSACSHAGLVKEGRHYFDTMRVCY-GITPEEDHYSRLIDLLCRAGMFSEAKNV 569

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
            ++MPFEP A I  +LL  C +H N+++G     RL+E+ P+  G Y+ LSN+YA+ G+W
Sbjct: 570 TESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQW 629

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           ++V RVR+LM+E+ V K+PG SWIE++ ++H F   D  HP    +   ++QL  + ++ 
Sbjct: 630 DEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKL 689

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GYVPD   VL+D++ EQKE  L  HSEKLA+ +G++  P GA IRV KNLRIC DCHN  
Sbjct: 690 GYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAF 749

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K++SKV  R++ +RD+ RFHH   G CSC +YW
Sbjct: 750 KYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 193/462 (41%), Gaps = 114/462 (24%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE------------------ 118
            + VHAH++ + ++P   +  RLI  Y K   +  AR +FD+                  
Sbjct: 15  ARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 119 ---------------MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
                          M  R+ VS+ AMI+A+S       AL LF++M R    P+ FTF+
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFS 134

Query: 164 TVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMY------------------ 204
           +VL + +     E   +Q+H  + K    S   V ++L+  Y                  
Sbjct: 135 SVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAA 194

Query: 205 ------AKAGRIHE------------------ARGVFECLPERDVVSCTAIISGYAQLGL 240
                 A  GR  E                  AR + E + +   V+  A+ISGY   G 
Sbjct: 195 RKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGF 254

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PS---YVV 296
            EEA +L R++   G+  +  TY SV++A S       G+QVH++VLR  + PS    + 
Sbjct: 255 YEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLS 314

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA------------------------- 331
           + N+LI +Y++CG L  +RRVFD M  + ++SWNA                         
Sbjct: 315 VNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRS 374

Query: 332 ------MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
                 M+ G +++G G E ++LFN M+ E  ++P    Y   ++ CS  G  D G  + 
Sbjct: 375 LLTWTVMISGLAQNGFGEEGLKLFNQMKLEG-LEPCDYAYAGAIASCSVLGSLDNGQQLH 433

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
            +I+    G +  +     ++ M  R G V  A      MP+
Sbjct: 434 SQIIQL--GHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY 473



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 41/352 (11%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP----VYLRTRLIV 101
           L  M +LG+++    Y ++++A  N      G++VHA++++T  +P     + +   LI 
Sbjct: 262 LRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALIT 321

Query: 102 FYNKCECLSDARKMFD-------------------------------EMRERNVVSWTAM 130
            Y +C  L +AR++FD                               EM  R++++WT M
Sbjct: 322 LYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVM 381

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           IS  +Q     E L LF +M     EP ++ +A  + SC+     + G+Q+HS II+   
Sbjct: 382 ISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGH 441

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +S + VG++L+ MY++ G +  A  VF  +P  D VS  A+I+  AQ G   +AI+L+ K
Sbjct: 442 DSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEK 501

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV-LRFEIPSYVVLQNSLIDMYSKCG 309
           +  E ++ + +T+ ++L+A S    +  G+     + + + I       + LID+  + G
Sbjct: 502 MLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAG 561

Query: 310 SLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE-LFNLMREEN 356
             + ++ V ++M  E     W A+L G   HG   +G +  + L  LM +++
Sbjct: 562 MFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQD 613



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 14/245 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K   +M   GLE     Y   + +C    +L  GQ++H+ +I+  +   + +   LI  Y
Sbjct: 396 KLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMY 455

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           ++C  +  A  +F  M   + VSW AMI+A +Q  H  +A+ L+ +ML+ D  P+  TF 
Sbjct: 456 SRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFL 515

Query: 164 TVLTSCAGAFGFELGKQIHSLIIK----SNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           T+L++C+ A   + G+     +      +  E H    S L+D+  +AG   EA+ V E 
Sbjct: 516 TILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHY---SRLIDLLCRAGMFSEAKNVTES 572

Query: 220 LP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALG 277
           +P E       A+++G    G  E  I+   +L +E M     TY S    LS + AALG
Sbjct: 573 MPFEPGAPIWEALLAGCWIHGNMELGIQAADRL-LELMPQQDGTYIS----LSNMYAALG 627

Query: 278 HGKQV 282
              +V
Sbjct: 628 QWDEV 632



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 8/140 (5%)

Query: 273 LAALGH---GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
           LA L H    + VH+H+L      + ++ N LID Y K  ++ Y+R +FD + +  +++ 
Sbjct: 6   LAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
             ML  YS  G  +   +LFN      +   D+V+Y A+++  SH       L +F ++ 
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIR---DTVSYNAMITAFSHSHDGHAALQLFVQMK 122

Query: 390 DCKDGFEPEIEHYGCVVDML 409
             + GF P+   +  V+  L
Sbjct: 123 --RLGFVPDPFTFSSVLGAL 140


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/585 (37%), Positives = 350/585 (59%), Gaps = 7/585 (1%)

Query: 46   LIEMATLGLEMRFEEYDTLLNA---CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
            L +M   G +++ +E  T+LNA   C ++  L   + +H + +K  +     +    +  
Sbjct: 736  LRQMLAGGEDVKADEV-TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 794

Query: 103  YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
            Y KC  LS A+++F  +R + V SW A+I  ++Q      +L+  ++M  S   P+ FT 
Sbjct: 795  YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 854

Query: 163  ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
             ++L++C+      LGK++H  II++  E  ++V  S+L +Y   G +   + +F+ + +
Sbjct: 855  CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 914

Query: 223  RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
            + +VS   +I+GY Q G  + A+ +FR++ + G+    ++   V  A S L +L  G++ 
Sbjct: 915  KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 974

Query: 283  HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
            H++ L+  +     +  SLIDMY+K GS+T S +VF+ + E++  SWNAM++GY  HG+ 
Sbjct: 975  HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 1034

Query: 343  REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            +E ++LF  M+      PD +T+L VL+ C+H G+   GL    ++     G +P ++HY
Sbjct: 1035 KEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQM-KSSFGLKPNLKHY 1092

Query: 403  GCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
             CV+DMLGRAG++ +AL  + + M  E    I  SLL +CR+H N+++GE V  +L E+E
Sbjct: 1093 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 1152

Query: 462  PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
            PE   NYV+LSNLYA  G+WEDV +VR+ M E ++ KD G SWIEL++ + +F   +R  
Sbjct: 1153 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 1212

Query: 522  PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
               EE+ +    L +K  + GY PD   V +D+ EE+K + L GHSEKLALT+GLI T E
Sbjct: 1213 DGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSE 1272

Query: 582  GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
            G  IRV KNLRICVDCHN AK +SKV  R++ +RD  RFHH   G
Sbjct: 1273 GTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 183/363 (50%), Gaps = 22/363 (6%)

Query: 31  QNLKTLCSNGQLTKAL---------IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVH 81
           + +   C  G L K+           E ++    +  E    LL A   ++ +  G+++H
Sbjct: 403 RRISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIH 462

Query: 82  AHMI-KTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
             +   T  R    L TR+I  Y  C    D+R +FD +R +N+  W A+IS+YS+    
Sbjct: 463 QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELY 522

Query: 141 FEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
            E L  FI M+ + D  P+ FT+  V+ +CAG     +G  +H L++K+     ++VG++
Sbjct: 523 DEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNA 582

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE----G 255
           L+  Y   G + +A  +F+ +PER++VS  ++I  ++  G  EE+  L  ++  E     
Sbjct: 583 LVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGA 642

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            + +  T  +VL   +    +G GK VH   ++  +   +VL N+L+DMYSKCG +T ++
Sbjct: 643 FMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQ 702

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSG 371
            +F   + + V+SWN M+ G+S  G   +    F+++R+       VK D VT L  +  
Sbjct: 703 MIFKMNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPV 759

Query: 372 CSH 374
           C H
Sbjct: 760 CFH 762



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           VL   +I MY+ CGS   SR VFD +  + +  WNA++  YS++ +  EV+E F  M   
Sbjct: 476 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 535

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             + PD  TY  V+  C+  GM D G+ +    +  K G   ++     +V   G  G V
Sbjct: 536 TDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 593

Query: 416 GEALEFIKNMP 426
            +AL+    MP
Sbjct: 594 TDALQLFDIMP 604


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 360/597 (60%), Gaps = 2/597 (0%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           S G+ + AL  +      +      T L+A  + R+   G++ H + +K+  +   Y+  
Sbjct: 88  SAGRHSDALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCN 147

Query: 98  RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
            ++  Y +C  + DA K+F+ +   ++ ++ +MI+ +        ++ +   M+    + 
Sbjct: 148 AVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQW 207

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           +  ++  VL  CA      LG Q+H+  +K   E ++YVGS+L+DMY K     +A   F
Sbjct: 208 DHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAF 267

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           E LPE++VVS TA+++ Y Q    E+A++LF  L++EG+  N  TYA  L + +GLAAL 
Sbjct: 268 EVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALK 327

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
           +G  + +  ++      + + N+L++MYSK GS+  + RVF +M  R V+SWN++++GY+
Sbjct: 328 NGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYA 387

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG+ RE + +F+ M    ++ P  VT++ VL  C+  G+ D GL  +  I+  + G +P
Sbjct: 388 HHGLAREAMCVFHDMLLA-EIVPSYVTFVGVLLACAQLGLVDEGL-YYLNIMMKEMGIKP 445

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
             EHY C+V +L RAGR+ EA +FI +           SLL +C+V+ N  +G  V +++
Sbjct: 446 GREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQI 505

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           ++++P + G YV+LSN+YA A RW+ V +VR+LM+E+ V K+PG SWI++   +H F + 
Sbjct: 506 LQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSE 565

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D++H    +++ K+K+L  + K  GYVP+ + VL+DV+ EQKE+ L+ HSEK+AL FGLI
Sbjct: 566 DKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLI 625

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +PEG  IR++KNLRIC DCH   K +S V  RK+ +RD  RFH I +G CSC DYW
Sbjct: 626 HSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 182/363 (50%), Gaps = 7/363 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +HA MI+  +   V     LI FY KC  L  AR+MFD M  RN VS   ++S Y+ 
Sbjct: 30  GKAIHAQMIRAAHFD-VIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYAS 88

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
                +AL L   +  +D   NE+  +T L++ A    + +G+Q H   +KS  + H YV
Sbjct: 89  AGRHSDALAL---LKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYV 145

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            +++L MY +   + +A  VFE +   D+ +  ++I+G+  LG  + +I + R +  E  
Sbjct: 146 CNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVE 205

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             ++V+Y +VL   +    L  G QVH+  L+  +   V + ++L+DMY KC     +  
Sbjct: 206 QWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHS 265

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            F+ + E+ V+SW A++  Y+++    + ++LF L  E   V+P+  TY   L+ C+   
Sbjct: 266 AFEVLPEKNVVSWTAVMTAYTQNERFEDALQLF-LDLEIEGVRPNEFTYAVALNSCAGLA 324

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
               G A+    +  K G    +     +++M  ++G + +A     +MP+    +    
Sbjct: 325 ALKNGNALSASAM--KTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSV 382

Query: 437 LLG 439
           ++G
Sbjct: 383 IIG 385


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/578 (37%), Positives = 338/578 (58%), Gaps = 11/578 (1%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           EY  LL AC   + L  G+R+HA ++ T ++  ++L   +++ Y KC  + D  + F  M
Sbjct: 35  EYLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGM 94

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           + RN+VSW A+ISAY+Q   S +A+ +F+RML    +P+  TF +VL + AG       K
Sbjct: 95  KRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAK 154

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            +H L ++  F SH  V ++LL+MY+K G I  AR VF+ L  +DVVS + +I+ YAQ G
Sbjct: 155 LVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTG 214

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+E+F ++  EG+ +N +T+ +V+ A   +A +   + +H  ++   + S  VL  
Sbjct: 215 HGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGT 274

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L++MY KCG L  ++++FD ++ER V+ W+A+L  Y++HG  R  ++LF LM++E  V+
Sbjct: 275 ALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEG-VR 333

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ VT++ VL  C HGG    G   F  +V   +   P   H  C++DMLGRAG++ EA 
Sbjct: 334 PNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHE-LRPTAHHVHCMLDMLGRAGKLEEAE 392

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            FI  MP +  A      LG+CR + +++ G+   +++ E  P     Y+ L+++Y  AG
Sbjct: 393 SFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAG 452

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
             E+   V  LM+ +   K+PG S I +   +H F    + HP  +E+ + + +L  +  
Sbjct: 453 MPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDELHARAL 512

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTP--EGAPIRVIKNLRICVDC 597
           E GYVPD   +L    E +       HSE+LAL FG +  P    +PI +IKNLR+C DC
Sbjct: 513 ELGYVPDTRPLLLGSVERKL------HSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDC 566

Query: 598 HNFAKFVSKVY-GRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H F KFVS+   GR++ +RD +RFH   +G CSCGDYW
Sbjct: 567 HEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 358/573 (62%), Gaps = 4/573 (0%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           D LL++   + T++G Q +H +++K+       +   LI FY+K +   D+R+ F++  +
Sbjct: 20  DLLLSSARTRSTIKGLQ-LHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQ 78

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           ++  +W+++IS ++Q    + +L    +M+  +  P++    +   SCA     ++G+ +
Sbjct: 79  KSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSV 138

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H L +K+ +++ ++VGSSL+DMYAK G I  AR +F+ +P+R+VV+ + ++ GYAQ+G +
Sbjct: 139 HCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGEN 198

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EEA+ LF++   E +  N  +++SV++  +    L  G+Q+H   ++    S   + +SL
Sbjct: 199 EEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSL 258

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + +YSKCG    + +VF+ +  + +  WNAML  Y++H   ++V+ELF  M+    +KP+
Sbjct: 259 VSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSG-MKPN 317

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+L VL+ CSH G+ D G   F ++ + +   EP  +HY  +VDMLGRAGR+ EALE 
Sbjct: 318 FITFLNVLNACSHAGLVDEGRYYFDQMKESR--IEPTDKHYASLVDMLGRAGRLQEALEV 375

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I NMP +PT ++ G+LL +C VH N ++  F   ++ E+ P ++G ++ LSN YA+ GR+
Sbjct: 376 ITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRF 435

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           ED  + R+L++++   K+ G SW+E    +HTF A +R H   +E+  K+ +L  + ++A
Sbjct: 436 EDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKA 495

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+ D S VL +VD ++K + +  HSE+LA+ FGLI  P   PIRV+KNLR+C DCHN  
Sbjct: 496 GYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAI 555

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+S    R + +RD NRFH   +G CSC DYW
Sbjct: 556 KFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 88/161 (54%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++++ C N   L  G+++H   IK+ +    ++ + L+  Y+KC     A ++F+E+ 
Sbjct: 220 FSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVP 279

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +N+  W AM+ AY+Q +H+ + + LF RM  S  +PN  TF  VL +C+ A   + G+ 
Sbjct: 280 VKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRY 339

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
               + +S  E      +SL+DM  +AGR+ EA  V   +P
Sbjct: 340 YFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMP 380



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 88/193 (45%), Gaps = 13/193 (6%)

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318
           NY     +L + +   +   G Q+H +V++  +    ++ N+LI+ YSK      SRR F
Sbjct: 14  NYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73

Query: 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLM-----REENKVKPDSVTYLAVLSGCS 373
           ++  +++  +W++++  ++++ +    +E    M     R ++ V P +    A+LS C 
Sbjct: 74  EDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRC- 132

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                D G +V    +  K G++ ++     +VDM  + G +  A +    MP       
Sbjct: 133 -----DIGRSV--HCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTW 185

Query: 434 LGSLLGACRVHYN 446
            G + G  ++  N
Sbjct: 186 SGMMYGYAQMGEN 198


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/536 (38%), Positives = 329/536 (61%), Gaps = 15/536 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y +   L  AR +F+ M ER++VSW AM+S Y+Q     EA  +F +M       N
Sbjct: 32  MLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM----PLKN 87

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             ++  +L +       E  K+    + +S  +  +   + L+      G + + R +F+
Sbjct: 88  GISWNGLLAAYVQNGRIEDAKR----LFESKMDWTLVSWNCLM-----GGFVRKRRNLFD 138

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P+RD +S +A+I+GY+Q G  EEA+  F ++Q +    N  ++   L+  S +AAL  
Sbjct: 139 NMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALEL 198

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+Q+H  +++    +   + N+L+ MY KCGS+  +R  F  + E+ V+SWN M+ GY++
Sbjct: 199 GRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYAR 258

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G E + +F LM+    ++PD  T ++VL+ CSH G+ D+G   F+ + +   G   +
Sbjct: 259 HGFGEEALTVFELMKTTG-IRPDDATMVSVLAACSHAGLVDQGSEYFYSM-NRDYGITAK 316

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           + HY C+VD+LGRAG++ EA   +KNMPFEP AA  G+LLGA R+H N ++GE   Q + 
Sbjct: 317 LVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIF 376

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EP N+G Y++LS LYA++GRW D  ++R  M+ K V K PG SW+E+   +HTF   D
Sbjct: 377 EMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGD 436

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            SHP  +++   ++++ +K K+ GY+   + V +DV+EE+K  +L  HSEKLA+ +G++ 
Sbjct: 437 TSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILY 496

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            P G PIRVIKNLR+C DCHN  K++SK+ GR + LRD +RFH+   G+CSC D+W
Sbjct: 497 IPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 11/215 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+ C N   L  G+++H  ++K  Y+   Y+   L+  Y KC  + +AR  F E+ E++V
Sbjct: 187 LSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDV 246

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHS 183
           VSW  MI  Y++     EAL +F  M  +   P++ T  +VL +C+ A   + G +  +S
Sbjct: 247 VSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYS 306

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAI-----ISGYAQ 237
           +       + +   + ++D+  +AG++ EA+ + + +P E D  +  A+     I G  +
Sbjct: 307 MNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           LG  E+A ++    ++E   S      S L A SG
Sbjct: 367 LG--EKAAQII--FEMEPHNSGMYILLSKLYAASG 397



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 23/156 (14%)

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           +I  Y +      +R +FD M ER + SWN ML GY ++   +    LF  M E      
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----- 55

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D V++ A+LSG +  G  D    +F+++   K+G                     G    
Sbjct: 56  DIVSWNAMLSGYAQNGFVDEAREIFYKM-PLKNGISWN-----------------GLLAA 97

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           +++N   E    +  S +    V +N  +G FV +R
Sbjct: 98  YVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKR 133


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 338/572 (59%), Gaps = 3/572 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           + + AC     L+ G+ VH ++I + +         LI  Y KC  L  A+++FD  + +
Sbjct: 327 STIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK 386

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+W ++I+ Y+Q  +  E L  F +M++ + +P+  TF  +L+  +       G+ IH
Sbjct: 387 DSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIH 445

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             +IK  FE+ + +G+SLLD+YAK G + +   VF  +   D++S   +I+         
Sbjct: 446 CDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCT 505

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
              ++  +++ EG++ +  T   +L   S LA    GK++H ++ +    S V + N+LI
Sbjct: 506 VGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALI 565

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MYSKCGSL    +VF  M E+ V++W A++  +  +G G++ ++ F  M E + V PDS
Sbjct: 566 EMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM-ELSGVLPDS 624

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V ++A +  CSH GM   GL  F  +       EP +EHY CVVD+L R+G + +A EFI
Sbjct: 625 VAFIAFIFACSHSGMVKEGLRFFDRM-KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFI 683

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            +MP +P A++ G+LL ACR   N +I + V ++++E+  ++ G YV++SN+YA+ G+W+
Sbjct: 684 LSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWD 743

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V  VR  MK K + K+PG SWIE+ + ++ F   D+S    +++   ++ L     + G
Sbjct: 744 QVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEG 803

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           YV D+   L+DV+E+ K  +L GHSE+LA+ FGL+ T  G+P+ V+KNLR+C DCH   K
Sbjct: 804 YVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTK 863

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +++K+  R++ +RD NRFH   +G CSCGD+W
Sbjct: 864 YITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 209/396 (52%), Gaps = 8/396 (2%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           ++ L  NG  T+AL    EM    L+     + +++N+C     L  G  VH H ++  +
Sbjct: 93  IRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGF 152

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +Y+   LI  Y++   L +AR +F+EM  R+ VSW ++IS Y       +AL+++ +
Sbjct: 153 ESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK 212

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
              +   P+ FT ++VL +C      + G  +H +I K      + +G+ LL MY K  R
Sbjct: 213 FRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFER 272

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + EAR VF  +  +D V+   +I GYAQLG  E +++LF  + ++G + + ++  S + A
Sbjct: 273 LREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRA 331

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
                 L  GK VH +++        V  N LIDMY+KCG L  ++ VFD    +  ++W
Sbjct: 332 CGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTW 391

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++ GY++ G  +E +E F +M+ E   KPDSVT++ +LS  S     ++G  +  +++
Sbjct: 392 NSLINGYTQSGYYKEGLESFKMMKMER--KPDSVTFVLLLSIFSQLADINQGRGIHCDVI 449

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
             K GFE E+     ++D+  + G + + L+    M
Sbjct: 450 --KFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 200/413 (48%), Gaps = 9/413 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERN 123
           L++  N   LR    VH+ +I +     V    +LI  Y + +    +  +F  +    N
Sbjct: 29  LSSAKNTPQLR---TVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNN 85

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V  W ++I A +      +AL  +  M     +P+ FTF +V+ SCA     ELG  +H 
Sbjct: 86  VYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHE 145

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             ++  FES +Y+G++L+DMY++   +  AR VFE +  RD VS  ++ISGY   G  E+
Sbjct: 146 HAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWED 205

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A++++ K ++ GM+ +  T +SVL A   L A+  G  VH  + +  I   V++ N L+ 
Sbjct: 206 ALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLS 265

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY K   L  +RRVF  M+ +  ++WN M+ GY++ G     V+LF  M   +   PD +
Sbjct: 266 MYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDML 323

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           +  + +  C   G    G  V   ++    GFE +      ++DM  + G +  A E   
Sbjct: 324 SITSTIRACGQSGDLQVGKFVHKYLIG--SGFECDTVACNILIDMYAKCGDLLAAQEVFD 381

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476
               + +      + G  +  Y  +  E      ME +P++   +V+L ++++
Sbjct: 382 TTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSV-TFVLLLSIFS 433



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 147 FIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           F     +  EP+ EF  +++L + + A      + +HSLII S     +     L+  YA
Sbjct: 6   FCSNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYA 65

Query: 206 KAGRIHEARGVFECL-PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           +      +  VF  + P  +V    +II      GL  +A+  + +++ + +  +  T+ 
Sbjct: 66  QVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFP 125

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           SV+ + + +  L  G  VH H +     S + + N+LIDMYS+   L  +R VF+ MS R
Sbjct: 126 SVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR 185

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
             +SWN+++ GY  +G   + +++++  R    V PD  T  +VL  C        G+AV
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKEGVAV 244

Query: 385 FHEIVD 390
            H +++
Sbjct: 245 -HGVIE 249



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM T GL         +L  C      R G+ +H ++ K+ +   V +   LI  Y+KC 
Sbjct: 513 EMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCG 572

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L +  K+F  M+E++VV+WTA+ISA+       +AL  F  M  S   P+   F   + 
Sbjct: 573 SLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIF 632

Query: 168 SCAGAFGFELGKQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +C+ +   + G +    +    N E  +   + ++D+ A++G + +A      +P +
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMK 689


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 343/581 (59%), Gaps = 17/581 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC----LSDARKMFDEM- 119
           L  C + RTL    ++HA  +K        L TRL+      +     L+ AR++FD + 
Sbjct: 32  LPHCTSLRTL---AQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHLAYARQVFDRVP 88

Query: 120 RERNVVSWTAMISAYSQKAH-----SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
              + V +  ++  Y++ ++     +  A+ +F+RML     P+ +TF ++L +CA A  
Sbjct: 89  HPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARA 148

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
            E G+Q H+L +K     H YV  +L++MYA+ G    AR +F       VVS  A+I+ 
Sbjct: 149 GEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAA 208

Query: 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294
             +     EA+ LFR++Q +G+    VT  SVL+A + L AL  G+ VH +V +  + S 
Sbjct: 209 AVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSL 268

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V +  +LIDMY+KCGSL  +  VF  M  +   +W+ M+V Y+ HG GRE + LF  M++
Sbjct: 269 VKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKK 328

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
           E  +KPD +T+L VL  CSH G+   GL  F ++ D   G  P I+HYGCV D+L R+G+
Sbjct: 329 EG-MKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD--HGIVPGIKHYGCVTDLLARSGQ 385

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           +  A +FI  +P  PT  +  +LL AC  H + ++G+ V +R+++++  + G+YVI SNL
Sbjct: 386 LERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNL 445

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
            A+ G WE++  VR+LM EK V K PG S IE+D  +H F A D  HP  +E    V ++
Sbjct: 446 CANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEV 505

Query: 535 SVKFKEAGYVPDMSCVLY-DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRI 593
             + K  GYVP+ S V + ++ EE+K   L  HSEKLA+ FGL+ T  GA +RV+KNLR+
Sbjct: 506 IDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRV 565

Query: 594 CVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           C DCH+ AK VS V+ R++ LRD NRFHH  EG CSCGDYW
Sbjct: 566 CPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 4/309 (1%)

Query: 43  TKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102
            +  + M   G+      + +LL AC   R    G++ HA  +K       Y+R  LI  
Sbjct: 118 VRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINM 177

Query: 103 YNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
           Y +C     AR MF       VVS+ AMI+A  + +   EAL LF  M     +P   T 
Sbjct: 178 YAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTV 237

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222
            +VL++CA     ELG+ +H  + K    S + V ++L+DMYAK G + +A  VF+ +  
Sbjct: 238 ISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMES 297

Query: 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282
           +D  + + +I  YA  G   EAI LF +++ EGM  + +T+  VL A S    +  G Q 
Sbjct: 298 KDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQY 357

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG- 340
              +    I   +     + D+ ++ G L  + +  D +    T I W  +L     HG 
Sbjct: 358 FDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGD 417

Query: 341 --MGREVVE 347
             +G+ V E
Sbjct: 418 FELGKRVFE 426


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/560 (40%), Positives = 346/560 (61%), Gaps = 6/560 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
            +VHAH+I + Y     L T+L+        +S  R++F  +   +   +T++I + S K
Sbjct: 29  HQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTS-K 87

Query: 138 AHSFEALNLFI--RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +H+F   +L+   RM+ S+  P+ +TF +V+ SCA     + G+ +H  ++   F   +Y
Sbjct: 88  SHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVY 147

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V ++L+ +Y K G +  AR VF+ + ER +V+  ++ISGY Q G  +EAI LF +++  G
Sbjct: 148 VQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  +  T+ SVL+A + L A   G  VH +++   +   VVL  SLI+MY +CG+++ +R
Sbjct: 208 VEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAR 267

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            VFD+M ER V++W AM+ GY  +G G + VELF+ MR  N + P+S+T++AVLS C+H 
Sbjct: 268 EVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR-NGLFPNSITFVAVLSACAHA 326

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN-MPFEPTAAIL 434
           G+ + G  +F  I + +    P +EH  C+VDMLGRAG + EA  FIK  +P  P  AIL
Sbjct: 327 GLVNEGRRLFASIRE-EYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAIL 385

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
            ++LGAC++H N D+G  V + L+  EPEN  +YVILSN+YA AGR + V  VR  M  K
Sbjct: 386 TAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRK 445

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            + K  G S +E+DQ  + F   D+SH     +   + +L  K  EAGYVP    V++++
Sbjct: 446 CLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHEL 505

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +EE++E  L  HSEKLA+ FGL+ T  G PIR++KNLR+C DCH+  KF+S +  R++ +
Sbjct: 506 EEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIV 565

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RDK RFHH   G+CSC DYW
Sbjct: 566 RDKLRFHHFKVGSCSCLDYW 585



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 188/366 (51%), Gaps = 41/366 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++ +C +   L+ G+ VH H++   +   VY++  L+  Y KC  L +ARK+FD++R
Sbjct: 114 FTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIR 173

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER++V+W +MIS Y Q   + EA+ LF RM  +  EP+  TF +VL++CA    F LG  
Sbjct: 174 ERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCW 233

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H  I+ +  + ++ +G+SL++MY + G + +AR VF+ + ER+VV+ TA+ISGY   G 
Sbjct: 234 VHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGY 293

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQN 299
             +A+ELF +++  G+  N +T+ +VL+A +    +  G+++ + +   + +   V    
Sbjct: 294 GSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNV 353

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L+DM  + G L                                   E +N ++EE    
Sbjct: 354 CLVDMLGRAGLLD----------------------------------EAYNFIKEEIPEN 379

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEA 418
           P      A+L  C      D G  V   ++      EPE   HY  + ++   AGR+ + 
Sbjct: 380 PAPAILTAMLGACKMHKNFDLGAQVAEHLLAA----EPENPAHYVILSNIYALAGRMDQ- 434

Query: 419 LEFIKN 424
           +E ++N
Sbjct: 435 VEIVRN 440



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     + ++L+AC +      G  VH +++       V L T LI  Y +C  
Sbjct: 203 MKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGN 262

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S AR++FD M+ERNVV+WTAMIS Y    +  +A+ LF  M R+   PN  TF  VL++
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSA 322

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSS----LLDMYAKAGRIHEARG-VFECLPE 222
           CA A     G+++ + I +   E H+  G      L+DM  +AG + EA   + E +PE
Sbjct: 323 CAHAGLVNEGRRLFASIRE---EYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPE 378


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 338/573 (58%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y + + L+ AR++F+ M E    +W AMIS Y       EAL L  +M     +
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHE 212
            ++ T+ T++++CA    F++GKQ+H+ I+K+    +    + V ++L+ +Y K  ++ E
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 213 ARGVFECLPERDVVSCTAIISGY-------------------------------AQLGLD 241
           AR +F  +P R++++  AI+SGY                               AQ G  
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +E ++LF++++++G       +A  LTA S L AL +G+Q+H+ ++     S + + N++
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MY+KCG +  +  VF  M    ++SWN+M+    +HG G + +ELF+ M +E  V PD
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG-VFPD 525

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+L VL+ CSH G+ ++G   F+ +++   G  P  +HY  +VD+  RAG    A   
Sbjct: 526 RITFLTVLTACSHAGLVEKGRHYFNSMLESY-GITPCEDHYARMVDLFCRAGMFSYARIV 584

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MP +P A +  +LL  CR+H N+D+G    ++L ++ P+N G YV+LSN+YA  GRW
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRW 644

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            +V +VR+LM+++AV K+P  SWIE++  +H F   D  HP    +   ++QL ++ K+ 
Sbjct: 645 NEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKL 704

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD   VL+D++ EQKE  L  HSEKLA+ FG++  P GA +RV KN+RIC DCHN  
Sbjct: 705 GYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAF 764

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SKV  R++ +RD+ RFHH   G CSC DYW
Sbjct: 765 KFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 41/350 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP----VYLRTRLIVFY 103
           +M  LG++     Y T+++AC N  + + G++VHA+++K    P     + +   LI  Y
Sbjct: 279 KMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLY 338

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAY-----SQKAHSF----------------- 141
            K   + +ARK+F  M  RN+++W A++S Y      ++A SF                 
Sbjct: 339 CKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMIS 398

Query: 142 ---------EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
                    E L LF +M     EP +F FA  LT+C+     E G+Q+H+ ++   +ES
Sbjct: 399 GLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES 458

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            + VG++++ MYAK G +  A  VF  +P  D+VS  ++I+   Q G   +AIELF ++ 
Sbjct: 459 SLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQML 518

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
            EG+  + +T+ +VLTA S    +  G+   + +L  + I         ++D++ + G  
Sbjct: 519 KEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMF 578

Query: 312 TYSRRVFDNM-SERTVISWNAMLVGYSKHG---MGREVVE-LFNLMREEN 356
           +Y+R V D+M S+     W A+L G   HG   +G E  E LF LM + +
Sbjct: 579 SYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 186/396 (46%), Gaps = 85/396 (21%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-------------------- 119
           VHAHMI + ++P  +   RL+  Y K   L  AR++F+E+                    
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 120 ----RE---------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
               RE         R+ V + AMI+ Y+       AL LF  M R D  P++FTF +VL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 167 TSCAGAFGFELG-KQIHSLIIKSNFES-HIYVGSSLLDMYAK--------AGRIHEARGV 216
           ++     G E    Q+H  ++K+        V ++LL +Y K           +  AR +
Sbjct: 155 SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKL 214

Query: 217 FECLPERDVVSCT-------------------------------AIISGYAQLGLDEEAI 245
           F+ +P+RD ++ T                               A+ISGY   G  +EA+
Sbjct: 215 FDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEAL 274

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSY---VVLQNSL 301
            L RK++  G+  + +TY ++++A + + +   GKQVH+++L+ E+ P++   + + N+L
Sbjct: 275 TLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNAL 334

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I +Y K   +  +R++F  M  R +I+WNA+L GY   G   E    F    EE  VK +
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF----EEMPVK-N 389

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            +T   ++SG +  G  D GL +F ++    DGFEP
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMR--LDGFEP 423



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 148/354 (41%), Gaps = 92/354 (25%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT----- 229
           F L + +H+ +I S F+   +  + LL+MY K+  +  AR +FE +P  D ++ T     
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITA 88

Query: 230 ----------------------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
                                       A+I+GYA  G    A+ELFR ++ +    +  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 262 TYASVLTALSGLAALGHGK---QVHSHVLRFEIP--SYVVLQNSLIDMYSK--------C 308
           T+ SVL+AL  +  +G+ +   Q+H  V++  +   S  VL N+L+ +Y K        C
Sbjct: 149 TFTSVLSAL--VLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-NALLSVYVKRASELGISC 205

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKH---GMGREVVELF--NLMREENK------ 357
            ++  +R++FD M +R  ++W  M+ GY ++      REV E    NL    N       
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265

Query: 358 -------------------VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                              ++ D +TY  ++S C++ G    G  V   I+  K+   P 
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL--KNELNP- 322

Query: 399 IEHYGC------VVDMLGRAGRVGEALEFIKNMPFEPTA---AILGSLLGACRV 443
             H  C      ++ +  +  +V EA +    MP        AIL   + A R+
Sbjct: 323 -NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 329/557 (59%), Gaps = 38/557 (6%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFE-ALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           A K+F  +   +   +  +  A+   + +   +L  +  ML+    PN FTF +++ +C 
Sbjct: 55  ALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK 114

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                E  KQ+H+ ++K  F    Y  ++L+ +Y   G + +AR VF  + + +VVS T+
Sbjct: 115 LE---EEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTS 171

Query: 231 IISGYAQLGL-DE-------------------------------EAIELFRKLQVEG-MI 257
           ++SGY+Q GL DE                               EA  LFR+++VE  M 
Sbjct: 172 LVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKME 231

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            +    A++L+A +G+ AL  G  +H +V +  I     L  ++IDMY KCG L  +  V
Sbjct: 232 LDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHV 291

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F  +  + V SWN M+ G++ HG G + + LF  M EE  V PDS+T++ VL+ C+H G+
Sbjct: 292 FCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGL 351

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
            + G   F  +VD   G +P  EHYGC+VD+L RAGR+ EA + I  MP  P AA+LG+L
Sbjct: 352 VEEGWYYFRYMVDVH-GIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGAL 410

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGACR+H N+++GE VG R++E++PEN+G YVIL N+YAS G+WE V  VR+LM ++ V 
Sbjct: 411 LGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVK 470

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+PG S IE++ +++ F A  R HP+ E + AK+ ++    +  G+VPD   VL+D+ EE
Sbjct: 471 KEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEE 530

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           ++E  L  HSEKLA+ +GL+ T  G  +RV KNLR+C DCH  +K +SKVY   + +RD+
Sbjct: 531 ERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDR 590

Query: 618 NRFHHIVEGTCSCGDYW 634
           +RFHH   G CSC DYW
Sbjct: 591 SRFHHFSNGECSCKDYW 607



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 58/337 (17%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +L+ AC   +     +++HAH++K  +    Y    LI  Y     L DAR++F  M 
Sbjct: 106 FPSLIRAC---KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMS 162

Query: 121 ERNVVSWTAMISAYSQ-------------------------------KAHSF-EALNLFI 148
           + NVVSWT+++S YSQ                               K + F EA  LF 
Sbjct: 163 DPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFR 222

Query: 149 RM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
           RM +    E + F  AT+L++C G    E G  IH  + K+       + ++++DMY K 
Sbjct: 223 RMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKC 282

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASV 266
           G + +A  VF  L  + V S   +I G+A  G  E+AI LF++++ E M++ + +T+ +V
Sbjct: 283 GCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNV 342

Query: 267 LTAL--SGLAALGHGKQVHSHVLRFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFD 319
           LTA   SGL   G       +  R+ +  + +         ++D+ ++ G L  +++V D
Sbjct: 343 LTACAHSGLVEEGW------YYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVID 396

Query: 320 NMSERTVISWNAMLVGYSK-HG-------MGREVVEL 348
            M      +    L+G  + HG       +G  V+EL
Sbjct: 397 EMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIEL 433


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 337/596 (56%), Gaps = 38/596 (6%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G      + M   GL+     + ++LNAC     LR G+++H  +I       V++   L
Sbjct: 137 GPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNAL 196

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
              Y +C  +  AR++FD M  RNVV+W  MIS Y +     + ++LF  M  S+ +P++
Sbjct: 197 TDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQ 256

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            T                                    SS+L  Y +AG I EAR VF  
Sbjct: 257 VT-----------------------------------ASSVLGAYIQAGYIDEARKVFGE 281

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           + E+D V  T +I G AQ G +E+A+ LF ++ +E    +  T +SV+++ + LA+L HG
Sbjct: 282 IREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHG 341

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           + VH       +   +++ ++L+DMY KCG    +  +F  M  R V+SWN+M+ GY+ +
Sbjct: 342 QVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALN 401

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G   E + L+  M EEN +KPDSVT++ VLS C H G+ + G   F  + D + G EP  
Sbjct: 402 GQDLEALSLYENMLEEN-LKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSD-QHGLEPTP 459

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
           +HY C+V++ GR+G + +A++ I +M  EP + I  ++L  C +  ++  GE   + L+E
Sbjct: 460 DHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIE 519

Query: 460 IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDR 519
           + P NA  Y++LSN+YA+ GRW+DV  +R LMK K V K    SWIE+D  +H F A DR
Sbjct: 520 LNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDR 579

Query: 520 SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT 579
           +HP  + +  ++ +L  K +EAG+ P+ + VL+D  E++K + +  HSEKLAL +GLI  
Sbjct: 580 THPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKK 639

Query: 580 PEG-APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           P G  PIR+IKN+R C DCH F KFVS +  R V LRD NRFHH VEG CSC DYW
Sbjct: 640 PHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 220/507 (43%), Gaps = 112/507 (22%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFD 117
           E Y  L   C     +   +R+ +HM    ++P   ++  RL+  Y K   +S ARK+FD
Sbjct: 23  ECYTRLALECFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFD 82

Query: 118 EMRERNVVSWTAMISAY-----------------SQKAHSFE--------------ALNL 146
           EM +R+  SW AM+S Y                 S+ + S+               AL +
Sbjct: 83  EMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGV 142

Query: 147 FIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
           F+RM +   +P E+T  +VL +C        GKQIH  II  N   +++V ++L D+YA+
Sbjct: 143 FLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYAR 202

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
            G I +AR +F+ +  R+VV+   +ISGY +    E+ I+LF ++QV  +  + VT +SV
Sbjct: 203 CGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSV 262

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L A                                   Y + G +  +R+VF  + E+  
Sbjct: 263 LGA-----------------------------------YIQAGYIDEARKVFGEIREKDE 287

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS------HG----- 375
           + W  M+VG +++G   + + LF+ M  EN  +PD  T  +V+S C+      HG     
Sbjct: 288 VCWTIMIVGCAQNGKEEDALLLFSEMLLEN-ARPDGYTISSVVSSCAKLASLYHGQVVHG 346

Query: 376 -----GMEDRGLAVFHEIVD--CKDGFEPE------------IEHYGCVVDMLGRAGRVG 416
                G+ D  L V   +VD  CK G   +            +  +  ++      G+  
Sbjct: 347 KAFLMGVND-DLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDL 405

Query: 417 EALEFIKNM---PFEPTAAILGSLLGACRVHYN-VDIGE-----FVGQRLMEIEPENAGN 467
           EAL   +NM     +P +     +L AC VH   V+ G+        Q  +E  P+   +
Sbjct: 406 EALSLYENMLEENLKPDSVTFVGVLSAC-VHAGLVEEGKEYFCSMSDQHGLEPTPD---H 461

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEK 494
           Y  + NL+  +G  +    +   M ++
Sbjct: 462 YACMVNLFGRSGHMDKAVDLISSMSQE 488



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 129/277 (46%), Gaps = 19/277 (6%)

Query: 39  NGQLTKALIEMATLGLE-MRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+   AL+  + + LE  R + Y   +++++C    +L  GQ VH           + +
Sbjct: 300 NGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLV 359

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y KC    DA  +F  M+ RNVVSW +MI  Y+      EAL+L+  ML  + 
Sbjct: 360 SSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENL 419

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIH-SLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           +P+  TF  VL++C  A   E GK+   S+  +   E      + +++++ ++G + +A 
Sbjct: 420 KPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAV 479

Query: 215 GVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
            +   +  E + +  T ++S     G D +  E+  +  +E    N V Y      LS +
Sbjct: 480 DLISSMSQEPNSLIWTTVLSVCVMKG-DIKHGEMAARCLIELNPFNAVPY----IMLSNM 534

Query: 274 -AALGHGKQVHS--------HVLRFEIPSYVVLQNSL 301
            AA G  K V S        HV +F   S++ + N +
Sbjct: 535 YAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEV 571


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 350/604 (57%), Gaps = 52/604 (8%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYN--KCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           +++HA  +KT      ++ +RL+  Y+  K   L  AR +FD ++ R+++ W  +I  Y 
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +   S + + LF  ++  +  P+ FT   V+  CA     + GKQIH L +K  F S ++
Sbjct: 93  ENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVV-----------SCTAIISGYAQLGLDEEA 244
           V  SL++MY+K G I  AR VF+ + ++DVV           S  A+I+GY + G  + A
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211

Query: 245 IELFRKLQVEGMIS-------------------------------NYVTYASVLTALSGL 273
           +ELF ++ +  +++                               ++ T  SVL+A+SGL
Sbjct: 212 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 271

Query: 274 AALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           A LG G+ +HS++ +  FE+    +L  SLI+MY+KCG +  +  VF  + ++ V  W A
Sbjct: 272 AVLGKGRWIHSYMEKNGFELDG--ILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTA 329

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++VG   HGM    + LF L   +  +KP+++ ++ VL+ C+H G+ D G   F  +++ 
Sbjct: 330 IIVGLGIHGMANHALALF-LEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMN- 387

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           +   EP +EHYGC+VD+L RAG + EA   I+NMP  P   I  SLLG  R H  +DIGE
Sbjct: 388 EYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGE 447

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           +  QR++E+ PE  G Y++LSN+YA++G WE V+ VRE+M ++   KDPG S +E    L
Sbjct: 448 YAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTL 507

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD-EEQKEKVLLGHSEKL 570
           H F   D SHP  +E+ AK+ ++  K K  G+VPD + VL  ++ E++KE  L  HSE+L
Sbjct: 508 HEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERL 567

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGLI    G PIR++KNLR+C DCH+  K +SK+Y R++ +RD  RFHH   G+CSC
Sbjct: 568 AIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSC 627

Query: 631 GDYW 634
            DYW
Sbjct: 628 MDYW 631



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 46/322 (14%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           ++  C     ++ G+++H   +K  +   V+++  L+  Y+KC  +  ARK+FD M ++ 
Sbjct: 121 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 180

Query: 123 ----------NVVSWTAMISAYSQ-------------------------------KAHSF 141
                     N+VSW AMI+ Y +                                    
Sbjct: 181 VVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFM 240

Query: 142 EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201
           +A+ +F  ML+  + P+  T  +VL++ +G      G+ IHS + K+ FE    +G+SL+
Sbjct: 241 DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLI 300

Query: 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
           +MYAK G I  A  VF  + ++ V   TAII G    G+   A+ LF ++   G+  N +
Sbjct: 301 EMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAI 360

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320
            +  VL A +    +  G+Q    ++  ++I   +     L+D+  + G L  ++   +N
Sbjct: 361 IFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIEN 420

Query: 321 M--SERTVISWNAMLVGYSKHG 340
           M  S   VI W ++L G   HG
Sbjct: 421 MPISPNKVI-WMSLLGGSRNHG 441



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 39  NGQL---TKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NGQ     K    M  LG         ++L+A      L  G+ +H++M K  +     L
Sbjct: 236 NGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGIL 295

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T LI  Y KC C+  A  +F  ++++ V  WTA+I        +  AL LF+ M ++  
Sbjct: 296 GTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGL 355

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEAR 214
           +PN   F  VL +C  A   + G+Q   +++     E  +     L+D+  +AG + EA+
Sbjct: 356 KPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAK 415

Query: 215 GVFECLP 221
              E +P
Sbjct: 416 NTIENMP 422


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/517 (39%), Positives = 307/517 (59%), Gaps = 3/517 (0%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           M   + VSWTA+I+AY    H+ EA+ +  R   S   P+ FT   VLT+CA     E G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 179 KQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           + + +   +       ++V ++ LD+Y K G + +AR VF+ +  RD V+  A++ GYA 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   EA++LF  +Q+EG   +  T    L+A + L AL  G+Q    V   E+    VL
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
             +LIDMY+KCGS + +  VF  M ER +I WNAM++G    G  +    L   M++   
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG- 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           VK +  T++ +L  C+H G+ + G   FH +        P IEHYGC+VD+  RAG + E
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYR-ISPRIEHYGCMVDLFSRAGLLEE 298

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A + I +MP    A + G+LLG C++H N D+ E   ++L+ +EP N+GNYV+LSN+Y++
Sbjct: 299 AHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSN 358

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           +GRWED  ++R  MK K + K P  SW+ELD  +H F+  D SHP+ +++ AK+ +L ++
Sbjct: 359 SGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGME 418

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K  GY P    V++DV+ E+KE  L+ HSEK+A+ F LI T  G  IRV KNLR+C DC
Sbjct: 419 MKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDC 478

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  K +S++  R++ +RD NRFH   +G CSC DYW
Sbjct: 479 HSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 3/279 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L AC     L  G+ V A   +       V++ T  +  Y KC  +  AR +FDEM+ R
Sbjct: 47  VLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNR 106

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+W AM+  Y+   H  EAL+LF  M     +P+ +T    L++C      +LG+Q  
Sbjct: 107 DAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAV 166

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            ++       +  +G++L+DMYAK G   EA  VF+ + ERD++   A+I G    G ++
Sbjct: 167 GMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEK 226

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHVLRFEIPSYVVLQNSL 301
            A  L  +++  G+  N  T+  +L + +    +  G+Q  H+    + I   +     +
Sbjct: 227 IAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCM 286

Query: 302 IDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKH 339
           +D++S+ G L  + ++  +M      + W A+L G   H
Sbjct: 287 VDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/597 (35%), Positives = 350/597 (58%), Gaps = 25/597 (4%)

Query: 57  RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMF 116
           R   + +LL  C +   +     ++A +I+  +    ++   L+   +    +  A K+F
Sbjct: 31  RRRHFISLLQNCKHNNQI---PPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIF 87

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
              +  NV  +TA+I       +  + ++L+ +M+ S   P+ +   +VL +C      +
Sbjct: 88  SHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALK 147

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT------- 229
            G+++HS ++K    S+  +   L+++Y K G   +AR VF+ +PERDVV+ T       
Sbjct: 148 EGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYF 207

Query: 230 -----------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
                      A+I G  + G    A+E+FR +Q E ++ N VT   VL+A S L AL  
Sbjct: 208 DHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQL 267

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+ V S++ +  I     +  +LI+MYS+CG +  ++RVF+ M E+ VI++N+M++G++ 
Sbjct: 268 GRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFAL 327

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEP 397
           HG   E VELF  + ++    P SVT++ VL+ CSHGG+ + G  +FH +   KD G EP
Sbjct: 328 HGKSVEAVELFRGLIKQG-FTPSSVTFVGVLNACSHGGLAELGFEIFHSMA--KDYGIEP 384

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           +IEHYGC+VD+LGR GR+ EA  FI+ M   P   +LG+LL AC++H N+++ E V + L
Sbjct: 385 QIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSL 444

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           +  +  ++G Y++LSN Y+S+G+W++   VR  M+E+ + K+PG S IE++  +H F   
Sbjct: 445 VACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLG 504

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D  HP +E++  K+++L+   +  GY P    VL+D+++ +KE  L  HSE+LA+ +GLI
Sbjct: 505 DLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLI 564

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            T     +RV+KNLR+C DCH   K +S +  RK+ +RD+NRFHH   G CSCGDYW
Sbjct: 565 STKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 328/574 (57%), Gaps = 38/574 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     +  G+++H    K      +++   L+  Y KC  LS+AR + DEM 
Sbjct: 144 FPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 203

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VVSW ++++ Y+Q     +AL +   M       +  T A++L + +          
Sbjct: 204 RRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN--------- 254

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
                  +  E+ +YV     DM+ K G+             + +VS   +I  Y +  +
Sbjct: 255 -------TTTENVMYVK----DMFFKMGK-------------KSLVSWNVMIGVYMKNAM 290

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+EL+  ++ +G   + V+  SVL A    +AL  GK++H ++ R ++   ++L+N+
Sbjct: 291 PVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 350

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LIDMY+KCG L  +R VF+NM  R V+SW AM+  Y   G G + V LF+ M++   V P
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLV-P 409

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DS+ ++  L+ CSH G+ + G + F  + D      P +EH  C+VD+LGRAG+V EA +
Sbjct: 410 DSIAFVTTLAACSHAGLLEEGRSCFKLMTD-HYKITPRLEHLACMVDLLGRAGKVKEAYK 468

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
           FI+ MP EP   + G+LLGACRVH N DIG     +L ++ PE +G YV+LSN+YA AGR
Sbjct: 469 FIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGR 528

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WE+VT +R +MK K + K+PG S +E+++I+HTF   DRSHP   E+  ++  L  K KE
Sbjct: 529 WEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKE 588

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE---GAPIRVIKNLRICVDC 597
            GYVPD    L+DV+EE KE  L  HSEKLA+ F L+ T E      IR+ KNLRIC DC
Sbjct: 589 LGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDC 648

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           H  AK +S++  R++ +RD NRFH    G CSC 
Sbjct: 649 HVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 176/362 (48%), Gaps = 39/362 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+   + +TLR    VH+ +I    R    L  +L+  Y   + ++ ARK+FDE+ ERN
Sbjct: 49  VLDTYPDLKTLR---TVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERN 105

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+    MI +Y       E + +F  M     +P+ +TF  VL +C+ +    +GK+IH 
Sbjct: 106 VIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHG 165

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
              K    S ++VG+ L+ MY K G + EAR V + +  RDVVS  ++++GYAQ    ++
Sbjct: 166 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDD 225

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E+ R+++   +  +  T AS+L A+S                                
Sbjct: 226 ALEVCREMESVKISHDAGTMASLLPAVSN------------------------------- 254

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
             +   ++ Y + +F  M +++++SWN M+  Y K+ M  E VEL++ M E +  +PD+V
Sbjct: 255 --TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGM-EADGFEPDAV 311

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           +  +VL  C        G  + H  ++ K    P +     ++DM  + G +  A +  +
Sbjct: 312 SITSVLPACGDTSALSLGKKI-HGYIERKK-LIPNLLLENALIDMYAKCGCLDRARDVFE 369

Query: 424 NM 425
           NM
Sbjct: 370 NM 371



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G E       ++L AC +   L  G+++H ++ +    P + L   LI  Y KC C
Sbjct: 301 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 360

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  AR +F+ M+ R+VVSWTAMISAY       +A+ LF +M  S   P+   F T L +
Sbjct: 361 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAA 420

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ A   E G+    L+         +   + ++D+  +AG++ EA    + +P
Sbjct: 421 CSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMP 474


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 353/596 (59%), Gaps = 31/596 (5%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            TL   C N  TL+   ++H  +I T      Y  + LI   +K   L  A K+F+ +  
Sbjct: 153 QTLQQKCNNFNTLK---QIHTQIITTGLSFQTYCLSHLIKISSKFN-LPYAFKIFNYISN 208

Query: 122 RNVVSWTAMISAYSQKAHSFE---ALNLFIRMLRS-DTEPNEFTFATVLTSC-AGAFGFE 176
             +  +  +IS+   + +  +   A +L+ ++L + + +PN FTF ++  +C +    F 
Sbjct: 209 PTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFH 268

Query: 177 LGKQIHSLIIK---SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
            G  +H+ ++K     F++  +V +SLL+ YAK G++  +R +F+ + E D+ +   I++
Sbjct: 269 YGPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILN 326

Query: 234 GYAQL-------------GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            YA+                  E++ LFR +QV G+  N VT  ++++A S L A+  G 
Sbjct: 327 AYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGF 386

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSK 338
            VH  VLR +I     +  + +DMYSKCG L  + +VFD M E  R    + AM+ G++ 
Sbjct: 387 WVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAV 446

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG G + +EL+  M+ +  V PDS T++  +  CSH G+ + GL +F  + +   G EP+
Sbjct: 447 HGYGNQALELYRKMKFKGLV-PDSATFVVTMFACSHVGLVEEGLEIFKSMKEV-HGVEPK 504

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +EHYGC++D+LGRAGR+ EA E++ +MP +P A +  SLLGA R+H N+ +GE    +L+
Sbjct: 505 LEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLI 564

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+EPE +GNYV+LSN+YAS GR  DV RVR+LMK   V K PG S +E+   +H F   D
Sbjct: 565 ELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGD 624

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
           RSHP  +E+  K+ +++ + +E G+    S  L+D++EE KE VL  HSE+LA+ F LI 
Sbjct: 625 RSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIA 684

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +P    IR+IKNLR+C DCH F K +S  Y R++ +RD+NRFHH  +G+CSC DYW
Sbjct: 685 SPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 135/285 (47%), Gaps = 10/285 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  +G+         L++AC N   +  G  VH  +++   +   ++ T  +  Y+KC 
Sbjct: 356 DMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCG 415

Query: 108 CLSDARKMFDEMRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           CL+ A ++FD+M E  R+   +TAMI  ++   +  +AL L+ +M      P+  TF   
Sbjct: 416 CLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVT 475

Query: 166 LTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER- 223
           + +C+     E G +I  S+      E  +     L+D+  +AGR+ EA      +P + 
Sbjct: 476 MFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKP 535

Query: 224 DVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           + V   +++     +  LG+ E A+    +L+ E    NYV  +++  ++  +  +   +
Sbjct: 536 NAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETS-GNYVLLSNMYASVGRVNDVKRVR 594

Query: 281 QVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           ++  H    ++P +  V ++ ++ +  +   S  +S+ ++  ++E
Sbjct: 595 KLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAE 639


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 349/618 (56%), Gaps = 49/618 (7%)

Query: 64   LLNACV-NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L +C  N    R G+ +H  +++        L   ++ +Y KC C   A K+F  M E+
Sbjct: 393  VLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEK 452

Query: 123  NVVSWTAMISAYSQ-----------------KAHSFE--------------ALNLFIRML 151
            + VSW  M+S+Y Q                  A S+               AL L  +M+
Sbjct: 453  DTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMV 512

Query: 152  RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
             +    N+ TF+  L   +      LGKQIH+ ++K       +V +SL+DMY K G + 
Sbjct: 513  AAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEME 572

Query: 212  EARGVFECLPER---------------DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            +A  +F+ LP+                + VS ++++SGY Q G  E+A++ F  +    +
Sbjct: 573  KASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV 632

Query: 257  ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
              +  T  SV++A +    L  G+QVH ++ +      V L +S+IDMY KCGSL  +  
Sbjct: 633  EVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWL 692

Query: 317  VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
            +F+   +R V+ W +M+ G + HG GRE V LF LM  E  + P+ V+++ VL+ CSH G
Sbjct: 693  IFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEG-ITPNEVSFVGVLTACSHAG 751

Query: 377  MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
            + + G   F  + +   G  P  EH+ C+VD+ GRAGR+ E  EFI N      +++  S
Sbjct: 752  LLEEGCKYFRLMREVY-GIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRS 810

Query: 437  LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
             L +CRVH N+++G +V ++L+E+EP +AG Y++ S++ A+  RWE+  ++R LM+++ V
Sbjct: 811  FLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGV 870

Query: 497  TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
             K+P +SWI+L   +H+F   DRSHP   ++ + + +L  + KE GY  D++ V+ DV++
Sbjct: 871  KKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQ 930

Query: 557  EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
            EQ++ +L  HSEKLA+ +G+I T  G PIRV+KNLR+C+DCHNF K+ S++ GR++ +RD
Sbjct: 931  EQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRD 990

Query: 617  KNRFHHIVEGTCSCGDYW 634
             +RFHH   G CSC DYW
Sbjct: 991  IHRFHHFKHGHCSCADYW 1008



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 239/528 (45%), Gaps = 105/528 (19%)

Query: 80  VHAHMIKTCYRPPVYLR-TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKA 138
           +HA +IK      V +R   L+  Y K + L  A KMF+E+ + +V SWT +IS +++  
Sbjct: 310 LHAKLIKN---GCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIG 366

Query: 139 HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG-FELGKQIHSLIIKSNFESHIYVG 197
            S + L LF +M      PN+FT + VL SC+       +GK IH  I+++  +    + 
Sbjct: 367 LSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN 426

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL------ 251
           +S+LD Y K      A  +F  + E+D VS   ++S Y Q+G  +++++LFR+L      
Sbjct: 427 NSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAA 486

Query: 252 ----QVEGMIS---------------------NYVTYASVLTALSGLAALGHGKQVHSHV 286
                ++G++                      N +T++  L   S L+ LG GKQ+H+ V
Sbjct: 487 SWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQV 546

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT---------------VISWNA 331
           L+  +     ++NSLIDMY KCG +  +  +F ++ + +                +SW++
Sbjct: 547 LKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSS 606

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+ GY ++G   + ++ F+ M   ++V+ D  T  +V+S C+  G+ + G  V   I   
Sbjct: 607 MVSGYVQNGRFEDALKTFSFMI-CSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKI 665

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH------- 444
             G +  +     ++DM  + G + +A   I N   +    +  S++  C +H       
Sbjct: 666 GHGLDVFLG--SSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQGREAV 722

Query: 445 --YNVDIGE--------FVGQ-----------------RLME----IEPENAGNYVILSN 473
             + + I E        FVG                  RLM     I P  A ++  + +
Sbjct: 723 RLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRP-GAEHFTCMVD 781

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           LY  AGR   +  ++E +   A++K        L  +  +F +S R H
Sbjct: 782 LYGRAGR---LNEIKEFIHNNAISK--------LSSVWRSFLSSCRVH 818



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G++VH ++ K  +   V+L + +I  Y KC  L+DA  +F++ ++R
Sbjct: 641 SVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR 700

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV WT+MIS  +      EA+ LF  M+     PNE +F  VLT+C+ A   E G +  
Sbjct: 701 NVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYF 760

Query: 183 SLI-----IKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            L+     I+   E      + ++D+Y +AGR++E +
Sbjct: 761 RLMREVYGIRPGAEHF----TCMVDLYGRAGRLNEIK 793


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/479 (39%), Positives = 315/479 (65%), Gaps = 10/479 (2%)

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           EFT++ +LT    A       ++H+ ++K+N+E    VG++LLD Y K G++ EA  VF 
Sbjct: 1   EFTYSVILT----ALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 56

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL-AALG 277
            + ++D+V+ +A+++GYAQ G  E AI++F +L   G+  N  T++S+L   +   A++G
Sbjct: 57  GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 116

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            GKQ H   ++  + S + + ++L+ MY+K G++  +  VF    E+ ++SWN+M+ GY+
Sbjct: 117 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYA 176

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFE 396
           +HG   + +++F  M++  KVK D VT++ V + C+H G+ + G   F  +V DCK    
Sbjct: 177 QHGQAMKALDVFKEMKK-RKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK--IA 233

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P  EH  C+VD+  RAG++ +A++ I+NMP    + I  ++L ACRVH   ++G    ++
Sbjct: 234 PTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEK 293

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHA 516
           ++ ++PE++  YV+LSN+YA +G W++  +VR+LM E+ V K+PG SWIE+    ++F A
Sbjct: 294 IIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLA 353

Query: 517 SDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGL 576
            DRSHP+++++  K++ LS + K+ GY PD S VL D+D+E KE VL  HSE+LA+ FGL
Sbjct: 354 GDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGL 413

Query: 577 IGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI-VEGTCSCGDYW 634
           I TP+G+P+ +IKNLR+C DCH   K ++K+  R++ +RD NRFHH   +G CSCGD+W
Sbjct: 414 IATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 11/293 (3%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           VHA ++KT Y     + T L+  Y K   + +A K+F  + ++++V+W+AM++ Y+Q   
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA-FGFELGKQIHSLIIKSNFESHIYVGS 198
           +  A+ +F  + +   +PNEFTF+++L  CA        GKQ H   IKS  +S + V S
Sbjct: 79  TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 138

Query: 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           +LL MYAK G I  A  VF+   E+D+VS  ++ISGYAQ G   +A+++F++++   +  
Sbjct: 139 ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 198

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           + VT+  V  A +    +  G++    ++R  +I       + ++D+YS+ G L  + +V
Sbjct: 199 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 258

Query: 318 FDNMSERTVIS-WNAMLVG---YSKHGMGREVVELFNLMREENKVKPDSVTYL 366
            +NM      + W  +L     + K  +GR   E    M+ E     DS  Y+
Sbjct: 259 IENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPE-----DSAAYV 306



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 95/187 (50%), Gaps = 15/187 (8%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRG-GQRVHAHMIKTCYRPPVYLRTR 98
           G+LTK        G++     + ++LN C       G G++ H   IK+     + + + 
Sbjct: 87  GELTKG-------GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSA 139

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y K   +  A ++F   RE+++VSW +MIS Y+Q   + +AL++F  M +   + +
Sbjct: 140 LLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMD 199

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIK----SNFESHIYVGSSLLDMYAKAGRIHEAR 214
             TF  V  +C  A   E G++   ++++    +  + H    S ++D+Y++AG++ +A 
Sbjct: 200 GVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEH---NSCMVDLYSRAGQLEKAM 256

Query: 215 GVFECLP 221
            V E +P
Sbjct: 257 KVIENMP 263


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 328/530 (61%), Gaps = 19/530 (3%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +AR++FDEMRERNV++WT MI+ Y Q      A  LF  M     E  E ++ ++L  
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM----PEKTEVSWTSML-- 241

Query: 169 CAGAFGFELGKQIHSLIIKSNFE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
                G+ L  +I     +  FE      +   ++++    + G I +AR VF+ + +RD
Sbjct: 242 ----LGYTLSGRIED--AEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRD 295

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
             +   +I  Y + G + EA+ELF ++Q +G+  ++ +  S+L+  + LA+L +G+QVH+
Sbjct: 296 NATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHA 355

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           H++R +    V + + L+ MY KCG L  ++ VFD    + +I WN+++ GY+ HG+G E
Sbjct: 356 HLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEE 415

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            +++F+ M     + P+ VT +A+L+ CS+GG  + GL +F E ++ K    P +EHY C
Sbjct: 416 ALKVFHEMPLSGTM-PNKVTLIAILTACSYGGKLEEGLEIF-ESMESKFCVTPTVEHYSC 473

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
            VDMLGRAG+V +A+E I +M  +P A + G+LLGAC+ H  +D+ E   ++L EIEPEN
Sbjct: 474 TVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPEN 533

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF-HASDRSHPM 523
           AG Y++LS++ AS  +W DV  +R+ M+ K V+K PG SWIE+ + +H F     R+HP 
Sbjct: 534 AGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPE 593

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
           +  +   +++     +EAGY PD S VL+DVDEE+K   L  HSE+LA+ +GL+  PEG 
Sbjct: 594 QAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGV 653

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           PIRV+KNLR+C DCH   K +SKV  R++ LRD NRFHH   G CSC DY
Sbjct: 654 PIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 135/250 (54%), Gaps = 2/250 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           PV     +IV   +   +  AR++FD+M +R+  +W  MI AY +K    EAL LF +M 
Sbjct: 264 PVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQ 323

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           R    P+  +  ++L+ CA     + G+Q+H+ +++  F+  +YV S L+ MY K G + 
Sbjct: 324 RQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELV 383

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A+ VF+  P +D++   +IISGYA  GL EEA+++F ++ + G + N VT  ++LTA S
Sbjct: 384 KAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACS 443

Query: 272 GLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISW 329
               L  G ++  S   +F +   V   +  +DM  + G +  +  + ++M+ +     W
Sbjct: 444 YGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVW 503

Query: 330 NAMLVGYSKH 339
            A+L     H
Sbjct: 504 GALLGACKTH 513



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 158/330 (47%), Gaps = 23/330 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y K   + +AR +F+ M ERNVVSWTAM+  Y Q+    EA  LF RM     E N
Sbjct: 85  LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRM----PERN 140

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           E ++  +          +  ++++ ++   +    +   ++++    + GR+ EAR +F+
Sbjct: 141 EVSWTVMFGGLIDGGRIDDARKLYDMMPGKD----VVASTNMIGGLCREGRVDEAREIFD 196

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + ER+V++ T +I+GY Q     + +++ RKL         V++ S+L   +    +  
Sbjct: 197 EMRERNVITWTTMITGYGQ----NKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIED 252

Query: 279 GKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
            ++       FE+     V+  N++I    + G +  +RRVFD M +R   +W  M+  Y
Sbjct: 253 AEEF------FEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAY 306

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
            + G   E +ELF  M+ +  V+P   + +++LS C+       G  V   +V C+  F+
Sbjct: 307 ERKGFELEALELFAQMQRQG-VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ--FD 363

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            ++     ++ M  + G + +A       P
Sbjct: 364 GDVYVASVLMTMYVKCGELVKAKLVFDRFP 393



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 141/348 (40%), Gaps = 60/348 (17%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +++ARK FD +R + + SW +++S Y       EA  +F      D  P           
Sbjct: 33  INEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMF------DEMP----------- 75

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                                 E +I   + L+  Y K   I EAR VFE +PER+VVS 
Sbjct: 76  ----------------------ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSW 113

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA++ GY Q G+  EA  LF ++     +S  V +  ++           G+   +  L 
Sbjct: 114 TAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDG---------GRIDDARKLY 164

Query: 289 FEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
             +P   VV   ++I    + G +  +R +FD M ER VI+W  M+ GY ++       +
Sbjct: 165 DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARK 224

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF +M E+ +V   S+     LSG      E      F E++  K    P I     +V 
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE------FFEVMPMK----PVIACNAMIV- 273

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            LG  G + +A      M     A   G +    R  + ++  E   Q
Sbjct: 274 ALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQ 321



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+   F    ++L+ C    +L+ G++VHAH+++  +   VY+ + L+  Y KC 
Sbjct: 321 QMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCG 380

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A+ +FD    ++++ W ++IS Y+      EAL +F  M  S T PN+ T   +LT
Sbjct: 381 ELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILT 440

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +C+     E G +I  S+  K      +   S  +DM  +AG++ +A
Sbjct: 441 ACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKA 487



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 44/228 (19%)

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NS++  Y   G    +R++FD M ER ++SWN ++ GY K+ M  E   +F +M E N  
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERN-- 109

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG---RAGRV 415
               V++ A++ G    GM      +F  +        PE       V M G     GR+
Sbjct: 110 ---VVSWTAMVKGYVQEGMVVEAELLFWRM--------PERNEVSWTV-MFGGLIDGGRI 157

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACR-------------------VHYNVDIGEF---- 452
            +A +    MP +   A    + G CR                   + +   I  +    
Sbjct: 158 DDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNK 217

Query: 453 ---VGQRLMEIEPENAG-NYVILSNLYASAGRWEDVTRVRELMKEKAV 496
              V ++L E+ PE    ++  +   Y  +GR ED     E+M  K V
Sbjct: 218 RVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV 265



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           I   S+ G +  +R+ FD++  + + SWN+++ GY  +G+ RE  ++F+ M E N V
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIV 80


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 337/577 (58%), Gaps = 41/577 (7%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y + + L  AR++ D +     V+W AMIS Y ++    EA + F RM     +
Sbjct: 221 TTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQ 280

Query: 157 PNEFTFATVLTSCAGA---FG-FELGKQIHSLIIKSNFE-SH---IYVGSSLLDMYAKAG 208
            +E+T+ +++++C       G F  G+Q+H  I+++  E SH   + V ++L+  Y K  
Sbjct: 281 EDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYD 340

Query: 209 RIHEARGVFECLPERDVVSCTAIISGY-------------------------------AQ 237
           R+ EAR VF+ +P RD++S  A++SGY                               AQ
Sbjct: 341 RMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQ 400

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G  EE ++LF +++ EG+      +A  +TA S L +L +G+Q+HS V+R    S +  
Sbjct: 401 NGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSA 460

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N+LI MYS+CG +  +  VF  M     +SWNAM+   ++HG G + +ELF  M +E+ 
Sbjct: 461 GNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKED- 519

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD +T+L +L+ C+H G+   G   F + +  + G  P  +HY  ++D+L RAG   +
Sbjct: 520 ILPDRITFLTILTACNHAGLIKEGRHYF-DTMCTRYGITPGEDHYARLIDLLCRAGMFLK 578

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A   IK+MPFE  A I  +LL  CR+H N+++G     RL+E+ P   G Y+ILSN+YA+
Sbjct: 579 AQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAA 638

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
            G+W++V RVR LM+E+ V K+PG SW+E++ ++H F   D  HP  + +   ++QL  +
Sbjct: 639 LGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNE 698

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+ GYVPD   VL+D++ E KE  L  HSEKLA+ +G++  P GA IRV KNLRIC DC
Sbjct: 699 MKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDC 758

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           HN  K++SKV  R++ +RD+ RFHH   G CSCG+YW
Sbjct: 759 HNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 190/421 (45%), Gaps = 93/421 (22%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T LN     + +   + VHAH++ + ++P  ++  RLI  Y K   ++ ARK+FD++ 
Sbjct: 10  YLTQLNHVSTTQII--ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIP 67

Query: 121 E---------------------------------RNVVSWTAMISAYSQKAHSFEALNLF 147
           +                                 R+ VS+ AMI+AYS       ALNLF
Sbjct: 68  KPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLF 127

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-IHSLIIK---------SNFESHIYVG 197
           ++M R    P+ FTF++VL++ +     E   Q +H  +IK         +N     YV 
Sbjct: 128 VQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVC 187

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDV-------------------------------- 225
            +   +   +  +  AR VF+  P+  +                                
Sbjct: 188 CASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPI 247

Query: 226 -VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGK 280
            V+  A+ISGY + GL EEA + FR++   G+  +  TY S+++A       +     G+
Sbjct: 248 DVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGR 307

Query: 281 QVHSHVLRFEI-PSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
           QVH ++LR  + PS+   + + N+LI  Y+K   +  +RRVFD M  R +ISWNA+L GY
Sbjct: 308 QVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGY 367

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
                  E   +F+ M E N      +T+  ++SG +  G  + GL +F+++    +G E
Sbjct: 368 VNAQRIEEANSIFSEMPERN-----VLTWTVMISGLAQNGFGEEGLKLFNQMK--SEGLE 420

Query: 397 P 397
           P
Sbjct: 421 P 421



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K   +M + GLE     +   + AC    +L  GQ++H+ +I+  +   +     LI  Y
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMY 468

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           ++C  +  A  +F  M   + VSW AMI+A +Q  H  +A+ LF +M++ D  P+  TF 
Sbjct: 469 SRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFL 528

Query: 164 TVLTSCAGAFGFELGKQIHSLIIK----SNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
           T+LT+C  A   + G+     +      +  E H    + L+D+  +AG   +A+ V + 
Sbjct: 529 TILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHY---ARLIDLLCRAGMFLKAQSVIKS 585

Query: 220 LP-ERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEGMISNYVTYASVLTAL 270
           +P E       A+++G    G  E  I+   +L   + G    Y+  +++  AL
Sbjct: 586 MPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAAL 639



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            + VH+H+L         + N LI++Y K  ++TY+R++FD + +  +++   +L  YS 
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            G  +   +LFN      +   D+V+Y A+++  SHG      L +F ++   + GF P+
Sbjct: 84  SGNVKLAQQLFNATPLTIR---DTVSYNAMITAYSHGNDGHAALNLFVQMK--RYGFLPD 138

Query: 399 IEHYGCVVDML 409
              +  V+  L
Sbjct: 139 PFTFSSVLSAL 149


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 337/573 (58%), Gaps = 37/573 (6%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y + + L+ AR++F+ M E    +W AMIS Y       EAL L  +M     +
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHE 212
            ++ T+ T++++CA    F++GKQ+H+ I+K+    +    + V ++L+ +Y K  ++ E
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 213 ARGVFECLPERDVVSCTAIISGY-------------------------------AQLGLD 241
           AR +F  +P R++++  AI+SGY                               AQ G  
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           +E ++LF++++++G       +A  LTA S L AL +G+Q+H+ ++     S + + N++
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I MY+KCG +  +  VF  M    ++SWN+M+    +HG G + +ELF+ M +E  V PD
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEG-VFPD 525

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            +T+L VL+ CSH G+ ++G   F+ +++   G  P  +HY  +VD+  RAG    A   
Sbjct: 526 RITFLTVLTACSHAGLVEKGRHYFNSMLESY-GITPCEDHYARMVDLFCRAGMFSYARIV 584

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MP +P A +  +LL  CR+H N+D+G    ++L ++ P+N G YV+LSN+YA  GRW
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRW 644

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
            DV +VR+LM+++AV K+P  SWIE++  +H F   D  HP    +   ++QL ++ K+ 
Sbjct: 645 NDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKL 704

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY+PD   VL+D++ EQKE  L  HSEKLA+ FG++  P  A +RV KN+RIC DCHN  
Sbjct: 705 GYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAF 764

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SKV  R++ +RD+ RFHH   G CSC DYW
Sbjct: 765 KFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 41/350 (11%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP----VYLRTRLIVFY 103
           +M  LG++     Y T+++AC N  + + G+++HA+++K    P     + +   LI  Y
Sbjct: 279 KMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLY 338

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAY-----SQKAHSF----------------- 141
            K   + +ARK+F  M  RN+++W A++S Y      ++A SF                 
Sbjct: 339 CKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMIS 398

Query: 142 ---------EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
                    E L LF +M     EP +F FA  LT+C+     E G+Q+H+ ++   +ES
Sbjct: 399 GLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYES 458

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            + VG++++ MYAK G +  A  VF  +P  D+VS  ++I+   Q G   +AIELF ++ 
Sbjct: 459 SLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQML 518

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSL 311
            EG+  + +T+ +VLTA S    +  G+   + +L  + I         ++D++ + G  
Sbjct: 519 KEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMF 578

Query: 312 TYSRRVFDNM-SERTVISWNAMLVGYSKHG---MGREVVE-LFNLMREEN 356
           +Y+R V D+M S+     W A+L G   HG   +G E  E LF LM + +
Sbjct: 579 SYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND 628



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 184/396 (46%), Gaps = 85/396 (21%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM-------------------- 119
           VHAHMI + ++P  +   RL+  Y K   +  AR++F+E+                    
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 120 ----RE---------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
               RE         R+ V + AMI+ Y+       AL LF  M R D  P++FTF +VL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 167 TSCAGAFGFELG-KQIHSLIIKS----------NFESHIYVG------------------ 197
           ++     G E    Q+H  ++K+          N    +YV                   
Sbjct: 155 SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKL 214

Query: 198 ------------SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
                       ++++  Y +   ++ AR VFE + E    +  A+ISGY   G  +EA+
Sbjct: 215 FDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEAL 274

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSY---VVLQNSL 301
            L RK++  G+  + +TY ++++A + + +   GKQ+H+++L+ E+ P++   + + N+L
Sbjct: 275 TLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNAL 334

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           I +Y K   +  +R++F  M  R +I+WNA+L GY   G   E    F    EE  VK +
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF----EEMPVK-N 389

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            +T   ++SG +  G  D GL +F ++    DGFEP
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMR--LDGFEP 423



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 54/248 (21%)

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT----- 229
           F L + +H+ +I S F+   +  + LL+MY K+  +  AR +FE +P  D ++ T     
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITA 88

Query: 230 ----------------------------AIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261
                                       A+I+GYA  G    A+ELFR ++ +    +  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 262 TYASVLTALSGLAALGHGK---QVHSHVLRFEIP--SYVVLQNSLIDMYSK--------C 308
           T+ SVL+AL  +  +G+ +   Q+H  V++  +   S  VL N+L+ +Y K        C
Sbjct: 149 TFTSVLSAL--VLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-NALLSVYVKRASELGIPC 205

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            ++  +R++FD M +R  ++W  M+ GY ++       E+F  M     V+     + A+
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM-----VENLGAAWNAM 260

Query: 369 LSGCSHGG 376
           +SG  H G
Sbjct: 261 ISGYVHCG 268


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/509 (41%), Positives = 316/509 (62%), Gaps = 8/509 (1%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           + A++   ++  H   AL     +L     P+  TF+  L + A A       QIHS ++
Sbjct: 72  FNALLRGLARGPHPTHALTFLSTIL----HPDALTFSFSLIASARALALSETSQIHSHLL 127

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           +    + I +G++L+D YAK G +  A+ VF+ +P RDV +  A+I+G AQ     EA+ 
Sbjct: 128 RRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALA 187

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
           LF +++ EG   N ++    L A S L AL  G+ VH+ V + ++   V + N++IDMY+
Sbjct: 188 LFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYA 247

Query: 307 KCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           KCG      RVF  M+  ++V++WN M++ ++ HG G   +ELF  M  + +V+ DSVTY
Sbjct: 248 KCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEM-GKTQVEMDSVTY 306

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
           LAVL  C+H G+ + G+ +F E+V    G    ++HYG VVD+LGRAGR+GEA   I +M
Sbjct: 307 LAVLCACNHAGLVEEGVRLFDEMVG--RGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSM 364

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
           P  P   +  SLLGAC+ + NV++ E   ++L+E+   + G++V+LSN+YA+  RWEDV 
Sbjct: 365 PIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVG 424

Query: 486 RVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
           RVRE MK + V K PG S+IE++ ++H F   D+SHP   E+ AK+ ++  + K  GYV 
Sbjct: 425 RVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVA 484

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           + S VL+D+ EE KE  L  HSEKLA+ FGLI T EG PIRV KNLRIC DCH   K +S
Sbjct: 485 ETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLIS 544

Query: 606 KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K+Y +++ +RD+ RFH   +G+CSC DYW
Sbjct: 545 KIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 5/322 (1%)

Query: 23  VPSFPPNPQN--LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           +P    N  N  L+ L      T AL  ++T+ L      +   L A      L    ++
Sbjct: 64  IPHPSTNDFNALLRGLARGPHPTHALTFLSTI-LHPDALTFSFSLIASARALALSETSQI 122

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           H+H+++      + L T LI  Y KC  L  A+++FDE+  R+V +W A+I+  +Q + S
Sbjct: 123 HSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKS 182

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
            EAL LF RM     + NE +    L +C+       G+ +H+ + K + + ++ V +++
Sbjct: 183 SEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAV 242

Query: 201 LDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           +DMYAK G   +   VF  +   + VV+   +I  +A  G    A+ELF ++    +  +
Sbjct: 243 IDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMD 302

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
            VTY +VL A +    +  G ++   ++   +   V    S++D+  + G L  + R+ +
Sbjct: 303 SVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIIN 362

Query: 320 NMS-ERTVISWNAMLVGYSKHG 340
           +M     V+ W ++L     +G
Sbjct: 363 SMPIVPDVVLWQSLLGACKTYG 384


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/582 (38%), Positives = 355/582 (60%), Gaps = 8/582 (1%)

Query: 55  EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDAR 113
           +++  EY+ +++A  + R L   Q+ HAH++ T C+R    L T+L+        ++  R
Sbjct: 7   KIKSAEYEAVVSAGPHLRRL---QQAHAHLVVTGCHRSRALL-TKLLTLSCAAGSIAYTR 62

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F  + + +   + ++I A S+   S +A+  + RML S   P+ +TF +V+ +CA   
Sbjct: 63  RLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLS 122

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
              +G  +HS +  S + S  +V ++L+  YAK+     AR VF+ +P+R +V+  ++IS
Sbjct: 123 LLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMIS 182

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GY Q GL  EA+E+F K++   +  +  T+ SVL+A S L +L  G  +H  ++   I  
Sbjct: 183 GYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITM 242

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            VVL  SL++M+S+CG +  +R VF +M E  V+ W AM+ GY  HG G E +E+F+ M+
Sbjct: 243 NVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMK 302

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
               V P+SVT++AVLS C+H G+ D G +VF  +   + G  P +EH+ C+VDM GR G
Sbjct: 303 ARGVV-PNSVTFVAVLSACAHAGLIDEGRSVFASMKQ-EYGVVPGVEHHVCMVDMFGRGG 360

Query: 414 RVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
            + EA +F+K +   E   A+  ++LGAC++H N D+G  V + L+  EPEN G+YV+LS
Sbjct: 361 LLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLS 420

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YA AGR + V  VR +M ++ + K  G S I++D   + F   D+SHP   E+   + 
Sbjct: 421 NMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLD 480

Query: 533 QLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +L  + K+AGY P     +++++ E++E  L  HSEKLA+ FGL+ T +G  +R++KNLR
Sbjct: 481 ELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLR 540

Query: 593 ICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           IC DCH+  KF+S V  R++ +RDK RFHH  EG+CSC DYW
Sbjct: 541 ICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 344/573 (60%), Gaps = 2/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +LNAC   R L  G+ +H  M +  +   V     LI  Y KC  L +A ++F  M+ R
Sbjct: 308 AVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR 367

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SW  +I+A+ Q +   EAL+L   M     + ++ +F   L  CA +     G+ IH
Sbjct: 368 DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIH 427

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA-QLGLD 241
           S I++S  ++ + + +++LDMY       +A  VF  +  RD VS  A+I+ YA Q  L 
Sbjct: 428 SWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLS 487

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EA+ LF+++Q+ G + + +++ + L+A +  A+L  GK +H  +    + S + + N++
Sbjct: 488 SEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAV 547

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           ++MY+K GSL  +R++F  M    VISWN M+  +++HG   +V+  F  M  E K+ P+
Sbjct: 548 LNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKL-PN 606

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            VT+++V+S CSHGG+   G+ +F  ++       P  EHY C+VD++ RAG++  A +F
Sbjct: 607 DVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKF 666

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I   P +P   I  ++LGA +VH +V+      + LME+ P+ +  YV+LSNLY   G+ 
Sbjct: 667 IAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKK 726

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           ++  ++R LM EK + K+P  S I + + +H F   D ++    E+  ++++LS++  +A
Sbjct: 727 DEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELERLSLEMAKA 786

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY PD + +L+DV +EQK+++L  HSEKLA+ FGLI T  G  +R+IKNLR+C DCH   
Sbjct: 787 GYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTAT 846

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SK+ GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 847 KFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 185/367 (50%), Gaps = 9/367 (2%)

Query: 63  TLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            +L AC  +   L  G+R+H  +  T      Y+ T L+  Y KC  + DARK+FD +R 
Sbjct: 104 AVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRH 163

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           + VV W AMI+AY+Q+ H  +A+ +F  ML    +    TF  VL +C+     E+ K +
Sbjct: 164 KRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLV 223

Query: 182 HSLIIKSNFESHIY---VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             L ++     H++     ++L++ Y   G + +A   F      +++  TA+I+ Y Q 
Sbjct: 224 -KLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS-RHRLELILATAMITQYTQR 281

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              +EA+ELF+ + +EG+  + +   +VL A SG   L  G+ +H  +       +V   
Sbjct: 282 ERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAG 341

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+LI+MY KCGSL  +  VF +M  R VISWN ++  + +H    E + L +LM+ +  V
Sbjct: 342 NALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDG-V 400

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           K D ++++  L  C+      +G  +   IV+   G + ++     ++DM G      +A
Sbjct: 401 KADKISFVNALPLCAASEALAKGRMIHSWIVE--SGIKADVMLDNAILDMYGSCKSTDDA 458

Query: 419 LEFIKNM 425
               + M
Sbjct: 459 SRVFRAM 465



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 189/390 (48%), Gaps = 19/390 (4%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           E   L+  CV +R        H H+  + +       T L+ FY  C  L  A + F   
Sbjct: 218 EVAKLVKLCVEERE-------HDHLHDSSFA------TALVNFYGSCGDLEQAFRAFSRH 264

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R   +++ TAMI+ Y+Q+    EAL LF  ML    + +      VL +C+G  G E G+
Sbjct: 265 RLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGR 323

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH  + +  F+ H+  G++L++MY K G + EA  VF  +  RDV+S   II+ + Q  
Sbjct: 324 MIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHS 383

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ L   +Q++G+ ++ +++ + L   +   AL  G+ +HS ++   I + V+L N
Sbjct: 384 QHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKV 358
           +++DMY  C S   + RVF  M  R  +SWNAM+  Y+    +  E + LF  M + +  
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEALLLFQQM-QLHGF 502

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD ++++A LS C+       G  +   I +   G E  +     V++M  ++G +  A
Sbjct: 503 MPDVISFVAALSACAAQASLAEGKLLHDRIRET--GLESNMTVANAVLNMYAKSGSLVLA 560

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +    MP  P       ++ A   H + D
Sbjct: 561 RKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 23/376 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL+   + R+L  G+ VHA + K+      ++   L+  Y  C  L DA+  FD M 
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGK 179
            ++ ++W  +I A+ Q   S +AL+LF  M      P    F  VL +C A     E G+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH ++  +  ES  YV ++LL MY K   + +AR VF+ +  + VV   A+I+ YAQ  
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV--------HSHVLRFEI 291
             E+AI++F  + +EG+ +  +T+  VL A S L  L   K V        H H+     
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF 240

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            +      +L++ Y  CG L  + R F       +++  AM+  Y++     E +ELF +
Sbjct: 241 AT------ALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKV 293

Query: 352 MREENKVKPDSVTYLAVLSGCS--HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           M  E  VK D +  +AVL+ CS   G  E R +  F   +     F+  +     +++M 
Sbjct: 294 MLLEG-VKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIR----FDRHVNAGNALINMY 348

Query: 410 GRAGRVGEALEFIKNM 425
           G+ G + EA+E  ++M
Sbjct: 349 GKCGSLEEAVEVFRSM 364


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 331/547 (60%), Gaps = 19/547 (3%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V  RT ++  Y +   +++AR +FDEM +RNVVSWTAMIS Y+Q      A  LF  M  
Sbjct: 174 VVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVM-- 231

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              + NE ++  +L     A   E  + + + +     +  +   ++++  + + G +  
Sbjct: 232 --PDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMP----DHPVAACNAMMVGFGQHGMVDA 285

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+ +FE +  RD  + +A+I  Y Q     EA+  FR++   G+  NY ++ S+LT  + 
Sbjct: 286 AKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAA 345

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA   +G+++H+ +LR    + V   ++LI MY KCG+L  ++RVF+    + V+ WN+M
Sbjct: 346 LATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSM 405

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY++HG+G E + +F+ +R   ++ PD +TY+ VL+ CS+ G    G  +F+ +    
Sbjct: 406 ITGYAQHGLGEEALGIFDDLRLA-RMAPDGITYIGVLTACSYTGKVKEGREIFNSM---- 460

Query: 393 DGFEPEIE----HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            G    I     HY C+VD+LGRAG V EAL+ I NMP EP A I G+L+GACR+H N +
Sbjct: 461 -GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAE 519

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           I E   ++L+E+EP +AG YV+LS++Y S GRWED + +R+ +  + + K PG SWIE +
Sbjct: 520 IAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYN 579

Query: 509 QILHTFHASD-RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           +++H F + D  SHP    +   +++L     E+GY  D S VL+DVDEEQK + L  HS
Sbjct: 580 KMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHS 639

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           E+ A+ +GL+  P G PIRV+KNLR+C DCH+  K ++K+  R++ LRD NRFHH  +G 
Sbjct: 640 ERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGL 699

Query: 628 CSCGDYW 634
           CSC DYW
Sbjct: 700 CSCRDYW 706



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 138/259 (53%), Gaps = 3/259 (1%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           PV     ++V + +   +  A+ MF+ M  R+  +W+AMI  Y Q     EAL+ F  ML
Sbjct: 266 PVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREML 325

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
                PN  +F ++LT CA     + G+++H+ +++ +F++ ++  S+L+ MY K G + 
Sbjct: 326 CRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLD 385

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A+ VF     +DVV   ++I+GYAQ GL EEA+ +F  L++  M  + +TY  VLTA S
Sbjct: 386 KAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACS 445

Query: 272 GLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISW 329
               +  G+++ +S  +   I       + ++D+  + G +  +  + +NM  E   I W
Sbjct: 446 YTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIW 505

Query: 330 NAMLVGYSKHGMGREVVEL 348
            A L+G  +     E+ E+
Sbjct: 506 GA-LMGACRMHKNAEIAEV 523



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 168/377 (44%), Gaps = 57/377 (15%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V   T L+  Y +   L+DA ++F +M ERN V++T ++  +       EA  LF  M
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEM 169

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
              D                                       +   +++L  Y +AGRI
Sbjct: 170 PDKD---------------------------------------VVARTAMLSGYCQAGRI 190

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            EAR +F+ +P+R+VVS TA+ISGYAQ G     + L RKL       N V++ ++L   
Sbjct: 191 TEARALFDEMPKRNVVSWTAMISGYAQNG----KVILARKLFEVMPDRNEVSWTAMLV-- 244

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQ-NSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            G    GH +      L   +P + V   N+++  + + G +  ++ +F+ M  R   +W
Sbjct: 245 -GYIQAGHVEDAED--LFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTW 301

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           +AM+  Y ++    E +  F  M     ++P+  +++++L+ C+     D G  +   ++
Sbjct: 302 SAMIKVYEQNEFLMEALSTFREMLCRG-IRPNYTSFISILTVCAALATADYGRELHAAML 360

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD- 448
            C   F+ ++     ++ M  + G + +A + + NM FEP   ++ + +      + +  
Sbjct: 361 RCS--FDTDVFAVSALITMYIKCGNLDKA-KRVFNM-FEPKDVVMWNSMITGYAQHGLGE 416

Query: 449 --IGEFVGQRLMEIEPE 463
             +G F   RL  + P+
Sbjct: 417 EALGIFDDLRLARMAPD 433



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G+   +  + ++L  C    T   G+ +HA M++  +   V+  + LI  Y KC 
Sbjct: 323 EMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCG 382

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A+++F+    ++VV W +MI+ Y+Q     EAL +F  +  +   P+  T+  VLT
Sbjct: 383 NLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLT 442

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDV 225
           +C+     + G++I +S+ + S+        S ++D+  +AG + EA  +   +P E D 
Sbjct: 443 ACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDA 502

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVE---GMISNYVTYASVLTA 269
           +   A++ G  ++  + E  E+  K  +E   G    YV  + + T+
Sbjct: 503 IIWGALM-GACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTS 548



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 53/285 (18%)

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           +AG I  AR  F+ +P R   S  A+I+GY +  L + A+ LF ++    + S    Y +
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGS----YNA 84

Query: 266 VLTALS--------GLAALG--------------------HGKQVHSHVLRFEIP----- 292
           ++  LS          AAL                     HG    +  L  ++P     
Sbjct: 85  LIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHV 144

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           +Y VL    +D     G +  +R++FD M ++ V++  AML GY + G   E   LF+ M
Sbjct: 145 TYTVLLGGFLD----AGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEM 200

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            + N      V++ A++SG +  G       +F  + D       E+     +V  + +A
Sbjct: 201 PKRN-----VVSWTAMISGYAQNGKVILARKLFEVMPD-----RNEVSWTAMLVGYI-QA 249

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           G V +A +    MP  P AA    ++G  + H  VD  + + +R+
Sbjct: 250 GHVEDAEDLFNAMPDHPVAACNAMMVGFGQ-HGMVDAAKAMFERM 293



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 109/286 (38%), Gaps = 55/286 (19%)

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           VV  N+ I    + G++  +R  FD M  RT  S+NA++ GY ++ +    + LF+ M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 355 EN----------------------------KVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
            +                             + P  V++ ++L G    G+    + +FH
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLG--RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           ++        PE  H    V + G   AGRV EA +    MP +   A    L G C+  
Sbjct: 137 QM--------PERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQA- 187

Query: 445 YNVDIGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
                G     R +  E+   N  ++  + + YA  G+     ++ E+M ++        
Sbjct: 188 -----GRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEV----- 237

Query: 503 SWIEL----DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
           SW  +     Q  H   A D  + M +   A    + V F + G V
Sbjct: 238 SWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMV 283


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 344/596 (57%), Gaps = 33/596 (5%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           N++  +  Q +H H IKT      ++   L+  Y K   +  A K+F   +  NV  +T+
Sbjct: 36  NRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTS 95

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I  +       +A+NLF +M+R     + +    +L +C        GK++H L++KS 
Sbjct: 96  LIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSG 155

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI---- 245
                 +   L+++Y K G + +AR +F+ +PERDVV+CT +I      G+ EEAI    
Sbjct: 156 LGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFN 215

Query: 246 ---------------------------ELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
                                      E+FR++QV+G+  N VT+  VL+A + L AL  
Sbjct: 216 EMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALEL 275

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+ +H+++ +  +     +  +LI+MYS+CG +  ++ +FD +  + V ++N+M+ G + 
Sbjct: 276 GRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLAL 335

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           HG   E VELF+ M +E +V+P+ +T++ VL+ CSHGG+ D G  +F E ++   G EPE
Sbjct: 336 HGKSIEAVELFSEMLKE-RVRPNGITFVGVLNACSHGGLVDLGGEIF-ESMEMIHGIEPE 393

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +EHYGC+VD+LGR GR+ EA +FI  M  E    +L SLL AC++H N+ +GE V + L 
Sbjct: 394 VEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLS 453

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E    ++G++++LSN YAS GRW     VRE M++  + K+PG S IE++  +H F + D
Sbjct: 454 EHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGD 513

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP R+ +  K+++L+   K  GY+P     L+D+D+EQKE  L  HSE+LA+ +GL+ 
Sbjct: 514 LRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVS 573

Query: 579 TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           T     +RV KNLRIC DCH   K ++K+  RK+ +RD+NRFHH   G CSC DYW
Sbjct: 574 TEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 154/328 (46%), Gaps = 44/328 (13%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L ACV QR L  G+ VH  ++K+       +  +L+  Y KC  L DARKMFD M ER
Sbjct: 130 AMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPER 189

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT--------------------------- 155
           +VV+ T MI +        EA+ +F  M   DT                           
Sbjct: 190 DVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQ 249

Query: 156 ----EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
               EPNE TF  VL++CA     ELG+ IH+ + K   E + +V  +L++MY++ G I 
Sbjct: 250 VKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDID 309

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           EA+ +F+ +  +DV +  ++I G A  G   EA+ELF ++  E +  N +T+  VL A S
Sbjct: 310 EAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACS 369

Query: 272 --GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
             GL  LG G+   S  +   I   V     ++D+  + G L      FD +    V + 
Sbjct: 370 HGGLVDLG-GEIFESMEMIHGIEPEVEHYGCMVDILGRVGRL---EEAFDFIGRMGVEAD 425

Query: 330 NAMLVG-------YSKHGMGREVVELFN 350
           + ML         +   GMG +V +L +
Sbjct: 426 DKMLCSLLSACKIHKNIGMGEKVAKLLS 453



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 43/301 (14%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L  NG+  + L    EM   G+E     +  +L+AC     L  G+ +HA+M K   
Sbjct: 229 IDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGV 288

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
               ++   LI  Y++C  + +A+ +FD +R ++V ++ +MI   +    S EA+ LF  
Sbjct: 289 EVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSE 348

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           ML+    PN  TF  VL +C+     +LG +I        FES        ++M      
Sbjct: 349 MLKERVRPNGITFVGVLNACSHGGLVDLGGEI--------FES--------MEM------ 386

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           IH         PE +   C   I G  ++G  EEA +   ++ VE   ++     S+L+A
Sbjct: 387 IHGIE------PEVEHYGCMVDILG--RVGRLEEAFDFIGRMGVE---ADDKMLCSLLSA 435

Query: 270 LSGLAALGHGKQVH---SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
                 +G G++V    S   R +  S+++L N     Y+  G  +Y+  V + M +  +
Sbjct: 436 CKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSN----FYASLGRWSYAAEVREKMEKGGI 491

Query: 327 I 327
           I
Sbjct: 492 I 492


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 322/546 (58%), Gaps = 12/546 (2%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P       L+  +  C  +  A ++F  M  R+V SW  M+S  S+     EA  +F  M
Sbjct: 70  PDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM 129

Query: 151 -LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
             R+    N    A   +   GA          +L   +  ++   + ++++  Y   G 
Sbjct: 130 PARNAVSWNAMVAARASSGDMGA--------AENLFRNAPEKTDAILWTAMVSGYMDTGN 181

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           + +A   F  +P R++VS  A+++GY +     +A+ +F+ +  + ++  N  T +SVL 
Sbjct: 182 VQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLL 241

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
             S L+ALG G+QVH   ++  +   + +  SL+ MY KCG L  + ++FD M  + +++
Sbjct: 242 GCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WNAM+ GY++HG GR+ ++LF  M++E  V PD +T LAVL+ C H G+ D G+  F  +
Sbjct: 302 WNAMISGYAQHGGGRKAIKLFEKMKDEGVV-PDWITLLAVLTACIHTGLCDFGIQCFETM 360

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +  +  EP+++HY C+VD+L RAG +  A+  I +MPFEP  +  G+LL ACRV+ N++
Sbjct: 361 QEAYN-IEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLE 419

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
             EF  ++L+E +P+NAG YV L+N+YA A RW+DV+RVR  MK+ AV K PG SW+E+ 
Sbjct: 420 FAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIK 479

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            + H F ++DR HP  + +  K+ +L    K  GY PD+   L+DV+E  K ++L+ HSE
Sbjct: 480 GVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSE 539

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FGLI T  G  +R+ KNLRIC DCHN AK +SK+  R++ LRD  RFHH   G C
Sbjct: 540 KLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHC 599

Query: 629 SCGDYW 634
           SCGDYW
Sbjct: 600 SCGDYW 605



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G++VH   +K      + + T L+  Y KC  L DA K+FDEM  +
Sbjct: 238 SVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK 297

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++V+W AMIS Y+Q     +A+ LF +M      P+  T   VLT+C      + G Q  
Sbjct: 298 DIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCF 357

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             + ++ N E  +   S ++D+  +AG +  A  +   +P
Sbjct: 358 ETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMP 397



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 120/320 (37%), Gaps = 64/320 (20%)

Query: 270 LSGLA-ALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           L+G A A G G+   +  L   IP    V  N+L+  +  CG +  + RVF  M  R V 
Sbjct: 45  LAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVT 104

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKV---------------------------KP 360
           SWN M+ G SK+G   E   +F  M   N V                           K 
Sbjct: 105 SWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKT 164

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP--EIEHYGCVVDMLGRAGRVGEA 418
           D++ + A++SG    G   + +  F  +        P   +  +  VV    +  R G+A
Sbjct: 165 DAILWTAMVSGYMDTGNVQKAMEYFRAM--------PVRNLVSWNAVVAGYVKNSRAGDA 216

Query: 419 LEFIKNMP----FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY-VILSN 473
           L   K M      +P  + L S+L  C     +  G  V Q  M++    +      L +
Sbjct: 217 LRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLS 276

Query: 474 LYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF--HASDRSHPMREELSAKV 531
           +Y   G  +D  ++ + M  K +        +  + ++  +  H   R          K 
Sbjct: 277 MYCKCGDLDDACKLFDEMHTKDI--------VAWNAMISGYAQHGGGR----------KA 318

Query: 532 KQLSVKFKEAGYVPDMSCVL 551
            +L  K K+ G VPD   +L
Sbjct: 319 IKLFEKMKDEGVVPDWITLL 338


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 342/579 (59%), Gaps = 7/579 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM- 119
           + T+L+AC +   +  G + H  + K       ++++ L+  Y+KC  +  A ++ +   
Sbjct: 124 FTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEH 183

Query: 120 ----RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
                + +   + ++++A  +     EA+ +  RM+      +  T+ +V+  C      
Sbjct: 184 GNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDL 243

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            LG Q+H+ ++K      ++VGS L+DM+ K G +  AR VF+ L  R+VV  T++++ Y
Sbjct: 244 GLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAY 303

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
            Q G  EE + L   +  EG +SN  T+A +L A +G+AAL HG  +H+ V +  I + V
Sbjct: 304 LQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRV 363

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           ++ N+LI+MYSKCG +  S  VF +M  R +I+WNAM+ GYS+HG+G++ + LF  M   
Sbjct: 364 IVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSA 423

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
            +  P+ VT++ VLS C+H  + + G    ++++      EP +EHY CVV +L RAG +
Sbjct: 424 GEC-PNHVTFVGVLSACAHLALVNEGFYYLNQLMK-HFKVEPGLEHYTCVVAVLCRAGML 481

Query: 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475
            EA  F++    +        LL AC +H N ++G  + + +++++P + G Y +LSN+Y
Sbjct: 482 EEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMY 541

Query: 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535
           A A  W+ VT +R++M+E+ V K+PG SWIE+   +H F +   +HP   ++  KV+ L 
Sbjct: 542 AKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLL 601

Query: 536 VKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICV 595
              K+ GYVP++  VL+DV++EQKE  L  HSEKLA+ +GL+  P  APIRVIKNLRIC 
Sbjct: 602 EMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICE 661

Query: 596 DCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           DCH   K +SKV  R + +RD +RFHH  +GTC+C D+W
Sbjct: 662 DCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 175/369 (47%), Gaps = 16/369 (4%)

Query: 70  NQRTLRGGQRVHAHMI-------KTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           N + L  G+ +H  ++          YR   +     LI  Y KC  L  AR +FDEM  
Sbjct: 24  NTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSL 83

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           R+VVS+  ++  Y       E + LF  M+ S  +PNE+ F TVL++CA +     G Q 
Sbjct: 84  RSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQC 143

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL-----PERDVVSCTAIISGYA 236
           H  + K     H +V SSL+ MY+K   +  A  V E        + D     ++++   
Sbjct: 144 HGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALV 203

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296
           + G   EA+E+  ++  EG++ + VTY SV+     +  LG G QVH+ +L+  +   V 
Sbjct: 204 ESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVF 263

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           + + L+DM+ KCG +  +R+VFD +  R V+ W +++  Y ++G   E + L + M  E 
Sbjct: 264 VGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREG 323

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416
            +  +     AVL     G    R   + H  V+ K G +  +     +++M  + G + 
Sbjct: 324 TMSNEFT--FAVLLNAFAGMAALRHGDLLHARVE-KLGIKNRVIVGNALINMYSKCGCID 380

Query: 417 EALEFIKNM 425
            + +   +M
Sbjct: 381 SSYDVFFDM 389



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 139/250 (55%), Gaps = 3/250 (1%)

Query: 33  LKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  L  +G+L +A   L  M   G+      Y +++  C   R L  G +VHA ++K   
Sbjct: 199 LNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGL 258

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V++ + L+  + KC  +  ARK+FD ++ RNVV WT++++AY Q     E LNL   
Sbjct: 259 TFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSC 318

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R  T  NEFTFA +L + AG      G  +H+ + K   ++ + VG++L++MY+K G 
Sbjct: 319 MDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGC 378

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           I  +  VF  +  RD+++  A+I GY+Q GL ++A+ LF+ +   G   N+VT+  VL+A
Sbjct: 379 IDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSA 438

Query: 270 LSGLAALGHG 279
            + LA +  G
Sbjct: 439 CAHLALVNEG 448


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 332/596 (55%), Gaps = 76/596 (12%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           TL   +++HAH+IKT +   +      I   +    LS + +            W  +I+
Sbjct: 90  TLEQTKQIHAHIIKTHFHHALQ-----IPLNDFPSGLSPSAQ------------WNFVIT 132

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           +Y+++     ALN++ ++ + D E + F   +VL +C      +LGK+IH  ++K   + 
Sbjct: 133 SYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDR 192

Query: 193 HIYVG-----------------------------------SSLLDMYAKAGRIHEARGVF 217
            ++VG                                   ++LLDMYAK G +  AR +F
Sbjct: 193 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLF 252

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
             L ++ VVS TA+I+G  +    EE  +LF ++Q E +  N +T  +            
Sbjct: 253 NGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN------------ 300

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
             K+      R E+    +L  +L+DMY+KCG +  + R+F     R +  WNA++ G++
Sbjct: 301 --KE------RVEVD--CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 350

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
            HG G E +++F  M E   VKP+ +T++ +L  CSH G+   G  +F ++V    G  P
Sbjct: 351 MHGYGEEALDIFAEM-ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF-GLVP 408

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRL 457
           +IEHYGC+VD+LGRAG + EA E IK+MP +P   + G+L+ ACR+H N  +GE    +L
Sbjct: 409 QIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQL 468

Query: 458 MEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHAS 517
           +EIEPEN G  V++SN+YA+A RW D   VR+ MK   + K+PG S IE++  +H F   
Sbjct: 469 LEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 528

Query: 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLI 577
           D+SHP    ++  + ++  K  EAGYVPD S VL ++DEE+KE  L  HSEKLA+ FGLI
Sbjct: 529 DQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLI 588

Query: 578 GTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
            T    PIR++KNLR+C DCH   K +SK+YGR + +RD+NRFHH  EG CSCGDY
Sbjct: 589 STAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 31/300 (10%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC      + G+ +H  ++K      V++   L++ Y +C C+  AR +FD+M ER
Sbjct: 164 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 223

Query: 123 NVVSW----TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +VVSW    TA++  Y++  H    L L  ++    T+    ++  ++  C  +   E G
Sbjct: 224 DVVSWIPTTTALLDMYAKCGH----LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEG 279

Query: 179 KQIH-------------SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
            ++              +++ K   E    + ++L+DMYAK G I+ A  +F     RD+
Sbjct: 280 TKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 339

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ---- 281
               AII+G+A  G  EEA+++F +++ +G+  N +T+  +L A S    +  GK+    
Sbjct: 340 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 399

Query: 282 -VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
            VH+  L  +I  Y      ++D+  + G L  +  +  +M  +   I W A++     H
Sbjct: 400 MVHTFGLVPQIEHY----GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 455


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 344/564 (60%), Gaps = 8/564 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +H +   +   P V + T +I  Y KC  L DAR  F+E++ +N V+W AM++ Y  
Sbjct: 50  GREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 109

Query: 137 KAHSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH- 193
                EAL LF  M        P++F+F+  + +C+     E G++IH ++ +   E H 
Sbjct: 110 DGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHK 169

Query: 194 -IYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
            + VG++LL+MY+K G + EAR VF+ +  + D V   A+I+ YAQ G  ++A++L+R +
Sbjct: 170 DVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM 229

Query: 252 Q-VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
                +     T+ +V+   + L+AL  G+ +H+ V      + +++ N+L+ MY KCG 
Sbjct: 230 HDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGC 289

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           L  +  VF +M  +  ISWN ++  Y+ HG   + + L+  M +   VKP  VT++ +LS
Sbjct: 290 LDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEM-DLQGVKPTEVTFVGLLS 348

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSHGG+   GL  F+ + D     +P + H+GC++D+LGR GR+ EA   +K+MP +  
Sbjct: 349 ACSHGGLVADGLDYFYRMQD-DHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQAN 407

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A    SLLGAC+ H ++  G     ++++  P  +G YV+LSN+YA+AGRW+DV ++R++
Sbjct: 408 AVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKI 467

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           M  + V K PG+SWIE+  ++H F + DRSHP  EE+  ++ ++  + K  GYVPD S V
Sbjct: 468 MAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSV 527

Query: 551 LYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
            +D++EE+KE +L+ HSEKLA+ +G +  P  + +R++KNLR+C+DCH   KF+S++ GR
Sbjct: 528 FHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGR 587

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           K+ +RD  RFH    G+CSC DYW
Sbjct: 588 KIVVRDAARFHLFENGSCSCRDYW 611



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 164/305 (53%), Gaps = 9/305 (2%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG--FELGKQIHSLIIKS 188
           ++A+S      EAL  F RM +S   P+  TF+ +L + A       + G++IH     S
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
               ++ VG++++ MY K GR+ +AR  FE L  ++ V+  A+++ Y   G D EA+ELF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 249 RKL--QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDM 304
           R++  +      +  +++  + A S L  L  G+++H  + R   E+   VV+  +L++M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 305 YSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           YSKCG L  +R+VFD++  +   + WNAM+  Y++HG G++ ++L+  M +   + P   
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T++ V+  C+      +G A+ H  V   + F+  +     +V M G+ G + EAL+   
Sbjct: 241 TFVTVIDVCAELSALKQGRAI-HARVRATN-FDANLLVSNALVHMYGKCGCLDEALDVFH 298

Query: 424 NMPFE 428
           +M  +
Sbjct: 299 SMKLK 303



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T+++ C     L+ G+ +HA +  T +   + +   L+  Y KC CL +A  +F  M+ +
Sbjct: 244 TVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLK 303

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQI 181
           + +SW  +IS+Y+   HS +AL L+  M     +P E TF  +L++C+ G    +     
Sbjct: 304 DEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYF 363

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + +      +  +     ++D+  + GR+ EA  V + +P
Sbjct: 364 YRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMP 403



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA--LGHGKQVHSHVLRF 289
           ++ ++  G   EA+  FR++   G   + VT++ +L A++ + A  +  G+++H +    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            +   VV+  ++I MY KCG L  +R  F+ +  +  ++WNAM+  Y   G  RE +ELF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 350 NLMREENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE--PEIEHYGCVV 406
             M E ++  +PD  ++   +  CS+    ++G  + HE++  ++G E   ++     ++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREI-HEMLR-REGKELHKDVVVGTALL 178

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           +M  + G + EA +   ++  +  +    +++ A   H
Sbjct: 179 NMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQH 216


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/523 (39%), Positives = 318/523 (60%), Gaps = 2/523 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F      N+  W  +I  YS       A+ L+  M      PN +TF  VL +C  
Sbjct: 20  AHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCK 79

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                 G+++HS I+K+  +    + + L+ +YA  G +  A  +F+ +PE D  S + +
Sbjct: 80  LLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTM 139

Query: 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291
           +SGY+Q G   E ++L R++Q E + S+  T ASV+     L  L  GK VHS++ +  +
Sbjct: 140 VSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGV 199

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
              VVL  +L+ MYSKCGSL  + +VF  M+ER V +W+ M+ GY+ HG   + ++LF+ 
Sbjct: 200 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDA 259

Query: 352 MREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           M+  +K+ P+ VT+ +VLS  SH G+ ++G  +F E +  +    P+I+HYGC+VD+  R
Sbjct: 260 MKR-SKIIPNCVTFTSVLSAYSHSGLVEKGHQIF-ETMWTEYKITPQIKHYGCMVDLFCR 317

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
           AG VG A +FI+ MP EP   +  +LLGAC+ H    +GE + +++++++P +  NYV +
Sbjct: 318 AGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFV 377

Query: 472 SNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKV 531
           SN+YAS GRW  V +VR LMKEKA  K  G S IE++ ++H F   + SHP RE++   +
Sbjct: 378 SNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGML 437

Query: 532 KQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
            Q++ K K+ G+V     VL+D+DEE+KE  L  HSE+LA+ +GL+ TP G+PIR++KNL
Sbjct: 438 HQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNL 497

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R C DCH   K +S+VY R++ LRD+  FHH  E  CSC DYW
Sbjct: 498 RACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 2/295 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      +  +LNAC     L  GQ +H+ ++K        L   LI  Y  C 
Sbjct: 57  DMFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACG 116

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+  A  MFDEM E +  SW+ M+S YSQ   + E L L   M   +   + FT A+V+ 
Sbjct: 117 CMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVG 176

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            C      +LGK +HS I K   +  + +G++L+ MY+K G +  A  VF+ + ERDV +
Sbjct: 177 VCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTT 236

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            + +I+GYA  G DE+A++LF  ++   +I N VT+ SVL+A S    +  G Q+   + 
Sbjct: 237 WSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMW 296

Query: 288 -RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
             ++I   +     ++D++ + G + ++ +    M  E  V+ W  +L     HG
Sbjct: 297 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G +  A  +F C    ++     II GY+       AI L++ + + G+  N  T+  VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
            A   L  L  G+++HS +++  +     L N LI +Y+ CG + Y+  +FD M E    
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           SW+ M+ GYS++G   E ++L   M+ EN V  D+ T  +V+  C   G+ D G  V H 
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAEN-VSSDAFTLASVVGVCGDLGVLDLGKWV-HS 192

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +D K+G + ++     +V M  + G +  AL+  + M
Sbjct: 193 YID-KEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM 229


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 348/617 (56%), Gaps = 41/617 (6%)

Query: 57  RFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARK 114
           RF+   +  +L A      L  G  +H    K       ++ T L+  Y  C  ++ AR 
Sbjct: 111 RFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARN 170

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174
           +FDEM +R+VV+W  MI  Y +     EA  LF  M  S+  P+E     ++++C     
Sbjct: 171 VFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 230

Query: 175 FELGKQIHSLIIKSN--FESHI-------YVGSSLLDM---------------------- 203
               + I+  +I+++   ++H+       Y G+  +DM                      
Sbjct: 231 MRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSG 290

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y+KAGR+ +AR +F+    +D+V  T +IS YA+    +EA+ +F ++   G+  + VT 
Sbjct: 291 YSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTM 350

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            SV++A   L  L   K VH +     + S + + N+LI+MY+KCG L  +R VF+ M  
Sbjct: 351 LSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT 410

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R V+SW++M+  ++ HG   + + LF  M++EN V+P+ VT++ VL GCSH G+ + G  
Sbjct: 411 RNVVSWSSMINAFAMHGEASDSLSLFAQMKQEN-VEPNEVTFVGVLYGCSHSGLVEEGKK 469

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
           +F  + D +    P+IEHYGC+VD+ GRA  + EALE I++MP  P   I GSL+ ACRV
Sbjct: 470 IFASMTD-EYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRV 528

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H  +++GE   +R++++EP++ G  V++SN+YA   RW+ V  +R +M++K V K+ G S
Sbjct: 529 HGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLS 588

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
            I+L+   H F   D+ H    E+  K+ ++  K K AGYVPD   VL DV+EE+K+ ++
Sbjct: 589 RIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLV 648

Query: 564 LGHSEKLALTFGLIGTPEG------APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           L HSEKLAL FGL+   +         IR++KNLR+C DCH F K VSKVY  ++ +RD+
Sbjct: 649 LWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDR 708

Query: 618 NRFHHIVEGTCSCGDYW 634
            RFH   +G CSC DYW
Sbjct: 709 TRFHRYKDGLCSCRDYW 725



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++       ++++ACVN  TL   + VH +         + +   LI  Y KC 
Sbjct: 337 EMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCG 396

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR +F++M  RNVVSW++MI+A++    + ++L+LF +M + + EPNE TF  VL 
Sbjct: 397 GLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLY 456

Query: 168 SCAGAFGFELGKQIH-SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDV 225
            C+ +   E GK+I  S+  + N    I     ++D++ +A  + EA  V E +P   +V
Sbjct: 457 GCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNV 516

Query: 226 VSCTAIISG---YAQLGLDEEAIELFRKLQ 252
           V   +++S    + +L L E A +   KL+
Sbjct: 517 VIWGSLMSACRVHGELELGELAAKRILKLE 546


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 315/517 (60%), Gaps = 11/517 (2%)

Query: 127 WTAMISAYSQ-----KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           W  +I A+ Q        +   +++F+RM     +P+  TF  +L S A      LG+ +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H+ I++       +V +SL+ MY+ +G +  AR +F  +PER+V+S + +I+GY + G  
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146

Query: 242 EEAIELFRKLQVEGMIS---NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           +EA+ LFR++Q+ G+     N  T + VL A   L AL HGK  H+++ +  +P  VVL 
Sbjct: 147 KEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLG 206

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            +LIDMY+KCGS+  +  VF N+   + V++W+AM+ G + HG+  E V LF+ M  +  
Sbjct: 207 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQG- 265

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           V+P++VT+LAV   C HGG+   G      + +      P I+HYGC+VD+ GRAGR+ E
Sbjct: 266 VRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE-DYSIIPTIQHYGCMVDLYGRAGRIKE 324

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A   +K+MP EP   + G+LL   R+H +++  E   ++L+E+EP N+G YV+LSN+YA 
Sbjct: 325 AWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAK 384

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
            GRWEDV  VR+LM+   + K PG S IE+  +LH F   D SHP   ++   ++++  +
Sbjct: 385 RGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILER 444

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K  GYV +   VL D+DEE KE  L  HSEKLAL +G + T  G PIR++KNLRIC DC
Sbjct: 445 LKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDC 504

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H   K +SKV+ R++ +RD NRFHH  +G CSC DYW
Sbjct: 505 HVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 155/301 (51%), Gaps = 6/301 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            + M   G++  F  +  LL +  +   L  G+ VHA +++       +++T LI  Y+ 
Sbjct: 52  FVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSS 111

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF--IRMLR-SDTEPNEFTF 162
              +  AR +F  M ERNV+SW+ MI+ Y +     EAL LF  ++ML  +D  PNEFT 
Sbjct: 112 SGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 171

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL-P 221
           + VL +C      E GK  H+ I K      + +G++L+DMYAK G + +A  VF  L P
Sbjct: 172 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 231

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
            +DV++ +A+ISG A  GL EE + LF K+  +G+  N VT+ +V  A      +  GK 
Sbjct: 232 NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 291

Query: 282 VHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
               +   + I   +     ++D+Y + G +  +  V  +M  E  V+ W A+L G   H
Sbjct: 292 YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMH 351

Query: 340 G 340
           G
Sbjct: 352 G 352


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 328/531 (61%), Gaps = 19/531 (3%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +AR +FDEMRERNVV+WT MI+ Y Q      A  LF  M     E  E ++ ++L  
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM----PEKTEVSWTSML-- 241

Query: 169 CAGAFGFELGKQIHSLIIKSNFE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
                G+ L  +I     +  FE      +   ++++  + + G I +AR VF+ + +RD
Sbjct: 242 ----LGYTLSGRIED--AEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRD 295

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
             +   +I  Y + G + EA++LF ++Q +G+  ++ +  S+L+  + LA+L +G+QVH+
Sbjct: 296 NATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHA 355

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
           H++R +    V + + L+ MY KCG L  ++ VFD  S + +I WN+++ GY+ HG+G E
Sbjct: 356 HLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEE 415

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            +++F+ M     + P+ VT +A+L+ CS+ G  + GL +F E ++ K    P +EHY C
Sbjct: 416 ALKIFHEMPSSGTM-PNKVTLIAILTACSYAGKLEEGLEIF-ESMESKFCVTPTVEHYSC 473

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464
            VDMLGRAG+V +A+E I++M  +P A + G+LLGAC+ H  +D+ E   ++L E EP+N
Sbjct: 474 TVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDN 533

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF-HASDRSHPM 523
           AG YV+LS++ AS  +W DV  VR+ M+   V+K PG SWIE+ + +H F     ++HP 
Sbjct: 534 AGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPE 593

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
           +  +   +++     +EAGY PD S VL+DVDEE+K   L  HSE+LA+ +GL+  PEG 
Sbjct: 594 QAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGV 653

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           PIRV+KNLR+C DCH   K +SKV  R++ LRD NRFHH   G CSC DYW
Sbjct: 654 PIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 2/250 (0%)

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
           PV     +IV + +   +S AR++FD M +R+  +W  MI AY +K    EAL+LF +M 
Sbjct: 264 PVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQ 323

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           +    P+  +  ++L+ CA     + G+Q+H+ +++  F+  +YV S L+ MY K G + 
Sbjct: 324 KQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELV 383

Query: 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           +A+ VF+    +D++   +IISGYA  GL EEA+++F ++   G + N VT  ++LTA S
Sbjct: 384 KAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACS 443

Query: 272 GLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISW 329
               L  G ++  S   +F +   V   +  +DM  + G +  +  + ++M+ +     W
Sbjct: 444 YAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVW 503

Query: 330 NAMLVGYSKH 339
            A+L     H
Sbjct: 504 GALLGACKTH 513



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 163/327 (49%), Gaps = 32/327 (9%)

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           Y++ R+IV         +AR +F+ M ERNVVSWTAM+  Y Q+    EA +LF RM   
Sbjct: 89  YIKNRMIV---------EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM--- 136

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
             E NE ++  +          +  ++++ ++   +    +   ++++    + GR+ EA
Sbjct: 137 -PERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKD----VVASTNMIGGLCREGRVDEA 191

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R +F+ + ER+VV+ T +I+GY Q    + A +LF  +  +      V++ S+L   +  
Sbjct: 192 RLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLS 247

Query: 274 AALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
             +   ++       FE+     V+  N++I  + + G ++ +RRVFD M +R   +W  
Sbjct: 248 GRIEDAEEF------FEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRG 301

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           M+  Y + G   E ++LF  M+++  V+P   + +++LS C+       G  V   +V C
Sbjct: 302 MIKAYERKGFELEALDLFAQMQKQG-VRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +  F+ ++     ++ M  + G + +A
Sbjct: 361 Q--FDDDVYVASVLMTMYVKCGELVKA 385



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+   F    ++L+ C    +L+ G++VHAH+++  +   VY+ + L+  Y KC 
Sbjct: 321 QMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCG 380

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  A+ +FD    ++++ W ++IS Y+      EAL +F  M  S T PN+ T   +LT
Sbjct: 381 ELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILT 440

Query: 168 SCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           +C+ A   E G +I  S+  K      +   S  +DM  +AG++ +A  + E +
Sbjct: 441 ACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESM 494



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 114/264 (43%), Gaps = 49/264 (18%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +++ARK FD ++ + + SW +++S Y       EA  LF  M                  
Sbjct: 33  INEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM------------------ 74

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                                 E ++   + L+  Y K   I EAR VFE +PER+VVS 
Sbjct: 75  ---------------------SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSW 113

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           TA++ GY Q G+  EA  LF ++     +S  V +  ++           G+   +  L 
Sbjct: 114 TAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLID---------DGRIDKARKLY 164

Query: 289 FEIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
             +P   VV   ++I    + G +  +R +FD M ER V++W  M+ GY ++       +
Sbjct: 165 DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARK 224

Query: 348 LFNLMREENKVKPDSVTYLAVLSG 371
           LF +M E+ +V   S+     LSG
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSG 248



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 57/315 (18%)

Query: 184 LIIKSNFESHIYVGSSL-LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           LI++  + +   V  S  +   ++ G+I+EAR  F+ L  + + S  +I+SGY   GL +
Sbjct: 6   LILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPK 65

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA +LF ++    ++S                                        N L+
Sbjct: 66  EARQLFDEMSERNVVS---------------------------------------WNGLV 86

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             Y K   +  +R VF+ M ER V+SW AM+ GY + GM  E   LF  M E N+     
Sbjct: 87  SGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNE----- 141

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V++  +  G    G  D+   ++ +++  KD     +     ++  L R GRV EA    
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLY-DMMPVKD-----VVASTNMIGGLCREGRVDEARLIF 195

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-NYVILSNLYASAGRW 481
             M  E       +++   R +  VD    V ++L E+ PE    ++  +   Y  +GR 
Sbjct: 196 DEMR-ERNVVTWTTMITGYRQNNRVD----VARKLFEVMPEKTEVSWTSMLLGYTLSGRI 250

Query: 482 EDVTRVRELMKEKAV 496
           ED     E+M  K V
Sbjct: 251 EDAEEFFEVMPMKPV 265


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 356/583 (61%), Gaps = 15/583 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +LNAC + +++  G++VHA++IK        +   L  FY+K   L  A K F  ++E++
Sbjct: 171 VLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD 230

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+SWT++IS+      +  +L+ F+ ML    +PNE+T  +VL++C      +LG QIHS
Sbjct: 231 VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS 290

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL-GLDE 242
           L IK  + S I + +S++ +Y K G + EA+ +FE +   ++V+  A+I+G+A++  L E
Sbjct: 291 LSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAE 350

Query: 243 E----------AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           +          A+ +F+KL   GM  +  T++SVL+  S L AL  G+Q+H  +++  + 
Sbjct: 351 DDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVL 410

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + VV+  +L+ MY+KCGS+  + + F  M  RT+ISW +M+ G+++HG+ ++ ++LF  M
Sbjct: 411 ADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDM 470

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           R    +KP+ VT++ VLS CSH G+ D  L  F E++  +   +P ++H+ C++DM  R 
Sbjct: 471 RLVG-IKPNQVTFVGVLSACSHAGLADEALYYF-ELMQKQYNIKPVMDHFACLIDMYLRL 528

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GRV EA + +  M FEP   I   L+  CR H   D+G +  ++L++++P++   YV L 
Sbjct: 529 GRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLL 588

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N++ SAGRW+DV++VR+LMKE+ V K    SWI + + +++F  +D+SH    E+   ++
Sbjct: 589 NMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLE 648

Query: 533 QLSVKFKEAGYVP--DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
            +  + K  GY P  D+  +  + +EE+     + HSEKLA+ FGL+  P   PIRV+K+
Sbjct: 649 TVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKS 708

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           + +C DCHNF +F+S + GR++ +RD  + H  + G CSCG Y
Sbjct: 709 ITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 751



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 248/496 (50%), Gaps = 20/496 (4%)

Query: 15  TFTQQQLTVPSFPPNPQN----LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVN 70
           T  +++ +  SFP N ++     +   S  QL     E   LG  +    Y  LL  C++
Sbjct: 17  THPRKRHSTASFPLNDKDKSVGFQKNHSLIQLNVVDAEEPKLGTRIESSYYFPLLQECID 76

Query: 71  QRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130
           +      + +H H++KT +   +++ T L+  Y+KC  +  A K+FD +  RNV +WT +
Sbjct: 77  RNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTL 136

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF 190
           ++ Y Q +H   AL LFI+ML +   P+ +T   VL +C+     E GKQ+H+ +IK + 
Sbjct: 137 LTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHI 196

Query: 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK 250
           +    +G+SL   Y+K  R+  A   F+ + E+DV+S T++IS     G    ++  F  
Sbjct: 197 DFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMD 256

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +  +GM  N  T  SVL+A   +  L  G Q+HS  ++    S ++++NS++ +Y KCG 
Sbjct: 257 MLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGW 316

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSK-----------HGMGREVVELFNLMREENKVK 359
           L  ++++F+ M    +++WNAM+ G++K           H  G   + +F  +     +K
Sbjct: 317 LIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSG-MK 375

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD  T+ +VLS CS+    ++G  +  +I+  K G   ++     +V M  + G + +A 
Sbjct: 376 PDLFTFSSVLSVCSNLVALEQGEQIHGQII--KSGVLADVVVGTALVSMYNKCGSIDKAS 433

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVD-IGEFVGQRLMEIEPENAGNYVILSNLYASA 478
           +    MP     +    + G  R   +   +  F   RL+ I+P N   +V + +  + A
Sbjct: 434 KAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVTFVGVLSACSHA 492

Query: 479 GRWEDVTRVRELMKEK 494
           G  ++     ELM+++
Sbjct: 493 GLADEALYYFELMQKQ 508


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 349/582 (59%), Gaps = 14/582 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+AC + ++L+ G + HA++IK        + + L   Y+KC  L DA K F  +RE+N
Sbjct: 171 VLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKN 230

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+SWT+ +SA        + L LF+ M+  D +PNEFT  + L+ C      ELG Q+ S
Sbjct: 231 VISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCS 290

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL----- 238
           L IK  +ES++ V +SLL +Y K+G I EA   F  + +  +V+  A+I+G+AQ+     
Sbjct: 291 LCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTK 350

Query: 239 ------GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
                     EA+++F KL   GM  +  T +SVL+  S + A+  G+Q+H+  ++    
Sbjct: 351 DNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFL 410

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           S V++  SLI MY+KCGS+  + + F  MS RT+I+W +M+ G+S+HGM ++ + +F  M
Sbjct: 411 SDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDM 470

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
                V+P++VT++ VLS CSH GM  + L  F EI+  K   +P ++HY C+VDM  R 
Sbjct: 471 SLAG-VRPNTVTFVGVLSACSHAGMVSQALNYF-EIMQKKYKIKPVMDHYECMVDMFVRL 528

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GR+ +AL FIK M +EP+  I  + +  CR H N+++G +  ++L+ ++P++   YV+L 
Sbjct: 529 GRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLL 588

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+Y SA R++DV+RVR++M+ + V K    SWI +   +++F  +D++HP    +   ++
Sbjct: 589 NMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLICKSLE 648

Query: 533 QLSVKFKEAGY-VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
            L  K K  GY + +   +  + +EE+     + HSEKLA+TFGL   P  +PIRV+K+ 
Sbjct: 649 DLLAKAKNLGYEMLESVEISDEEEEEKTSSPTIYHSEKLAITFGLENLPNSSPIRVVKST 708

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
            IC D HNF K VS + GR++ ++D  R H  V G CSCG++
Sbjct: 709 LICRDSHNFIKCVSTLTGREIIVKDSKRLHKFVNGECSCGNF 750



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 197/369 (53%), Gaps = 14/369 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL  C+++R+  G Q VH H++KT      ++ + L+  Y KC  + DAR++F+ M 
Sbjct: 67  YVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMP 126

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            RNVV+WT ++  + Q +    A+++F  ML + + P+ +T + VL +C+     +LG Q
Sbjct: 127 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQ 186

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
            H+ IIK + +    VGS+L  +Y+K GR+ +A   F  + E++V+S T+ +S     G 
Sbjct: 187 FHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGA 246

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             + + LF ++  E +  N  T  S L+    + +L  G QV S  ++F   S + ++NS
Sbjct: 247 PVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNS 306

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH-----------GMGREVVELF 349
           L+ +Y K G +  + R F+ M + ++++WNAM+ G+++              G E +++F
Sbjct: 307 LLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIF 366

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           + + +   +KPD  T  +VLS CS     ++G  +  + +  K GF  ++     ++ M 
Sbjct: 367 SKLNQSG-MKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTI--KTGFLSDVIVSTSLISMY 423

Query: 410 GRAGRVGEA 418
            + G +  A
Sbjct: 424 NKCGSIERA 432



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 157/318 (49%), Gaps = 16/318 (5%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   K L   +EM +  ++       + L+ C    +L  G +V +  IK  Y   + +
Sbjct: 244 NGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRV 303

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK-----------AHSFEAL 144
           R  L+  Y K   + +A + F+ M + ++V+W AMI+ ++Q                EAL
Sbjct: 304 RNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEAL 363

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204
            +F ++ +S  +P+ FT ++VL+ C+     E G+QIH+  IK+ F S + V +SL+ MY
Sbjct: 364 KIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 423

Query: 205 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G I  A   F  +  R +++ T++I+G++Q G+ ++A+ +F  + + G+  N VT+ 
Sbjct: 424 NKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFV 483

Query: 265 SVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS- 322
            VL+A S    +         +  +++I   +     ++DM+ + G L  +      M+ 
Sbjct: 484 GVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNY 543

Query: 323 ERTVISWNAMLVGYSKHG 340
           E +   W+  + G   HG
Sbjct: 544 EPSEFIWSNFIAGCRSHG 561



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 148/293 (50%), Gaps = 6/293 (2%)

Query: 136 QKAHSFEALNLFIRML--RSDTEPNEFTF-ATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
           QK+H F  L+    +L  +  TE  E  F   +L  C     +   + +H  ++K+    
Sbjct: 38  QKSHRFTHLDFGEALLLNKEGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHD 97

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
           + +V S L+++YAK G + +AR VFE +P R+VV+ T ++ G+ Q    + AI +F+++ 
Sbjct: 98  NFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEML 157

Query: 253 VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
             G   +  T ++VL A S L +L  G Q H++++++ +     + ++L  +YSKCG L 
Sbjct: 158 YAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLE 217

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            + + F  + E+ VISW + +     +G   + + LF  M  E+ +KP+  T  + LS C
Sbjct: 218 DALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISED-IKPNEFTLTSALSQC 276

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
                 + G  V    +  K G+E  +     ++ +  ++G + EA  F   M
Sbjct: 277 CEIPSLELGTQVCSLCI--KFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRM 327



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 32  NLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP 91
           NL       +  K   ++   G++       ++L+ C     +  G+++HA  IKT +  
Sbjct: 352 NLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLS 411

Query: 92  PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML 151
            V + T LI  YNKC  +  A K F EM  R +++WT+MI+ +SQ   S +AL++F  M 
Sbjct: 412 DVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMS 471

Query: 152 RSDTEPNEFTFATVLTSC--AGAFG-----FELGKQIHSL-IIKSNFESHIYVGSSLLDM 203
            +   PN  TF  VL++C  AG        FE+ ++ + +  +  ++E        ++DM
Sbjct: 472 LAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYE-------CMVDM 524

Query: 204 YAKAGRIHEA 213
           + + GR+ +A
Sbjct: 525 FVRLGRLEQA 534


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/527 (41%), Positives = 328/527 (62%), Gaps = 18/527 (3%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A+  F++M  ++  SW  MI+ ++Q     +A +LF+ M      P +     V+T  A 
Sbjct: 57  AQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIM------PTK----NVVTWNAM 106

Query: 172 AFGF-ELGKQIHSLII--KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
             G+ E G    +L +  K+ F+S +   ++++  Y K GRI  A  +FE +PE+++V+ 
Sbjct: 107 ISGYVECGDLDSALKLFEKAPFKS-VVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTW 165

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+I+GY +    E+ ++LFR +   G+  N  T +S L   S L+AL  G+QVH  V +
Sbjct: 166 NAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCK 225

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +        SLI MY KCG L    ++F  +  R V++WNAM+ GY++HG G++ + L
Sbjct: 226 SPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGL 285

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVD 407
           F+ M E+  +KPD +T++AVL  C+H G  D G+  FH +   KD G   + +HY C+VD
Sbjct: 286 FDEMIEKG-MKPDWITFVAVLMACNHAGFTDLGVKYFHSMA--KDYGLVAKPDHYTCMVD 342

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           +LGRAG++ EA++ I+ MPF+P AA+ G+LLGACR+H N ++ EF  Q+L+ ++P +A  
Sbjct: 343 LLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATG 402

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV L+N+YA+  RW+ V RVR+ MK   V K PG SWIE+  + H F + D+ HP    +
Sbjct: 403 YVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASI 462

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
             K+K+L  K K AGYVPD+   L+DV EEQKE++LL HSEKLA+ +GLI  P G PIRV
Sbjct: 463 HGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRV 522

Query: 588 IKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            KNLR+C DCH   K++S++  R++ +RD  RFHH  +G CSC DYW
Sbjct: 523 FKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y K   +  A ++F++M E+N+V+W AMI+ Y +   + + + LF  M+    +
Sbjct: 135 TAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQ 194

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN  T ++ L  C+     +LG+Q+H L+ KS        G+SL+ MY K G + +   +
Sbjct: 195 PNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKL 254

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL--SGLA 274
           F  +P RDVV+  A+ISGYAQ G  ++A+ LF ++  +GM  +++T+ +VL A   +G  
Sbjct: 255 FVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFT 314

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
            LG  K  HS    + + +       ++D+  + G L  +  + + M
Sbjct: 315 DLG-VKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 4/225 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G++       + L  C     L+ G++VH  + K+         T LI  Y KC  
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D  K+F ++  R+VV+W AMIS Y+Q     +AL LF  M+    +P+  TF  VL +
Sbjct: 248 LEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMA 307

Query: 169 CAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C  A   +LG K  HS+       +     + ++D+  +AG++ EA  + E +P +   +
Sbjct: 308 CNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAA 367

Query: 228 CTAIISGYAQLGLDEEAIELFRK--LQVE-GMISNYVTYASVLTA 269
               + G  ++  + E  E   +  L ++    + YV  A+V  A
Sbjct: 368 VFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAA 412



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 55/311 (17%)

Query: 119 MRERNVVSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
           M  +  V+W ++++  S+K     EA  LF+++     EP+  ++ T+L SC        
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKI----PEPDAVSYNTML-SC-------- 47

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
                                     Y +   +  A+  FE +P +D  S   +I+G+AQ
Sbjct: 48  --------------------------YVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQ 81

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY--V 295
               ++A +LF  +  +    N VT+ ++   +SG    G    + S +  FE   +  V
Sbjct: 82  NQQMDKARDLFLIMPTK----NVVTWNAM---ISGYVECG---DLDSALKLFEKAPFKSV 131

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
           V   ++I  Y K G +  + R+F+ M E+ +++WNAM+ GY ++    + V+LF  M   
Sbjct: 132 VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGF 191

Query: 356 NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415
             ++P+S T  + L GCS       G  V H++V CK     +      ++ M  + G +
Sbjct: 192 G-IQPNSSTLSSALLGCSELSALQLGRQV-HQLV-CKSPLCDDTTAGTSLISMYCKCGVL 248

Query: 416 GEALEFIKNMP 426
            +  +    +P
Sbjct: 249 EDGWKLFVQVP 259


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 356/583 (61%), Gaps = 15/583 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +LNAC + +++  G++VHA++IK        +   L  FY+K   L  A K F  ++E++
Sbjct: 165 VLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD 224

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+SWT++IS+      +  +L+ F+ ML    +PNE+T  +VL++C      +LG QIHS
Sbjct: 225 VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS 284

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL-GLDE 242
           L IK  + S I + +S++ +Y K G + EA+ +FE +   ++V+  A+I+G+A++  L E
Sbjct: 285 LSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAE 344

Query: 243 E----------AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           +          A+ +F+KL   GM  +  T++SVL+  S L AL  G+Q+H  +++  + 
Sbjct: 345 DDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVL 404

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + VV+  +L+ MY+KCGS+  + + F  M  RT+ISW +M+ G+++HG+ ++ ++LF  M
Sbjct: 405 ADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDM 464

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
           R    +KP+ VT++ VLS CSH G+ D  L  F E++  +   +P ++H+ C++DM  R 
Sbjct: 465 RLVG-IKPNQVTFVGVLSACSHAGLADEALYYF-ELMQKQYNIKPVMDHFACLIDMYLRL 522

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
           GRV EA + +  M FEP   I   L+  CR H   D+G +  ++L++++P++   YV L 
Sbjct: 523 GRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLL 582

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N++ SAGRW+DV++VR+LMKE+ V K    SWI + + +++F  +D+SH    E+   ++
Sbjct: 583 NMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLE 642

Query: 533 QLSVKFKEAGYVP--DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
            +  + K  GY P  D+  +  + +EE+     + HSEKLA+ FGL+  P   PIRV+K+
Sbjct: 643 TVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKS 702

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           + +C DCHNF +F+S + GR++ +RD  + H  + G CSCG Y
Sbjct: 703 ITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGY 745



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 235/466 (50%), Gaps = 16/466 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           QL     E   LG  +    Y  LL  C+++      + +H H++KT +   +++ T L+
Sbjct: 41  QLNVVDAEEPKLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLV 100

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y+KC  +  A K+FD +  RNV +WT +++ Y Q +H   AL LFI+ML +   P+ +
Sbjct: 101 NVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNY 160

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
           T   VL +C+     E GKQ+H+ +IK + +    +G+SL   Y+K  R+  A   F+ +
Sbjct: 161 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKII 220

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            E+DV+S T++IS     G    ++  F  +  +GM  N  T  SVL+A   +  L  G 
Sbjct: 221 KEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGA 280

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK-- 338
           Q+HS  ++    S ++++NS++ +Y KCG L  ++++F+ M    +++WNAM+ G++K  
Sbjct: 281 QIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMM 340

Query: 339 ---------HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
                    H  G   + +F  +     +KPD  T+ +VLS CS+    ++G  +  +I+
Sbjct: 341 DLAEDDVAAHKSGSTALAMFQKLYRSG-MKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 399

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD- 448
             K G   ++     +V M  + G + +A +    MP     +    + G  R   +   
Sbjct: 400 --KSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQA 457

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +  F   RL+ I+P N   +V + +  + AG  ++     ELM+++
Sbjct: 458 LQLFEDMRLVGIKP-NQVTFVGVLSACSHAGLADEALYYFELMQKQ 502


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/608 (36%), Positives = 343/608 (56%), Gaps = 39/608 (6%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L A      L  G  +H    K       ++ T  +  Y  C  ++ AR +FDEM  R+
Sbjct: 117 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VV+W  MI  Y +     EA  LF  M  S+  P+E     ++++C         + I+ 
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 184 LIIKSN--FESHI-------YVGSSLLDM----------------------YAKAGRIHE 212
            +I+++   ++H+       Y G+  +DM                      Y+K GR+ +
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A+ +F+   ++D+V  T +IS Y +    +EA+ +F ++   G+  + V+  SV++A + 
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  L   K VHS +    + S + + N+LI+MY+KCG L  +R VF+ M  R V+SW++M
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +   S HG   + + LF  M++EN V+P+ VT++ VL GCSH G+ + G  +F  + D +
Sbjct: 417 INALSMHGEASDALSLFARMKQEN-VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD-E 474

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
               P++EHYGC+VD+ GRA  + EALE I++MP      I GSL+ ACR+H  +++G+F
Sbjct: 475 YNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKF 534

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             +R++E+EP++ G  V++SN+YA   RWEDV  +R +M+EK V K+ G S I+ +   H
Sbjct: 535 AAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSH 594

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F   D+ H    E+ AK+ ++  K K AGYVPD   VL DV+EE+K+ ++L HSEKLAL
Sbjct: 595 EFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLAL 654

Query: 573 TFGLIGTPEG------APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
            FGL+   +         IR++KNLR+C DCH F K VSKVY R++ +RD+ RFH    G
Sbjct: 655 CFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNG 714

Query: 627 TCSCGDYW 634
            CSC DYW
Sbjct: 715 LCSCRDYW 722



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 155/349 (44%), Gaps = 52/349 (14%)

Query: 144 LNLFIRMLRSDTEP-----------------NEFTFATVLTSCAGAFGFELGKQIHSLII 186
            N F+R L   +EP                 ++F+F  +L + +       G ++H +  
Sbjct: 79  FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAF 138

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
           K       +V +  +DMYA  GRI+ AR VF+ +  RDVV+   +I  Y + GL +EA +
Sbjct: 139 KIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH-----------SHVLRFEIPSY- 294
           LF +++   ++ + +   ++++A      + + + ++           +H+L   +  Y 
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYA 258

Query: 295 -------------------VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
                              + +  +++  YSKCG L  ++ +FD   ++ ++ W  M+  
Sbjct: 259 GAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISA 318

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y +    +E + +F  M     +KPD V+  +V+S C++ G+ D+   V H  +   +G 
Sbjct: 319 YVESDYPQEALRVFEEMCCSG-IKPDVVSMFSVISACANLGILDKAKWV-HSCIHV-NGL 375

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           E E+     +++M  + G +    +  + MP     +   S++ A  +H
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMINALSMH 423



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 5/188 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   G++       ++++AC N   L   + VH+ +        + +   LI  Y KC 
Sbjct: 334 EMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCG 393

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L   R +F++M  RNVVSW++MI+A S    + +AL+LF RM + + EPNE TF  VL 
Sbjct: 394 GLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLY 453

Query: 168 SCAGAFGFELGKQIH-SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            C+ +   E GK+I  S+  + N    +     ++D++ +A  + EA  V E +P    V
Sbjct: 454 GCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP----V 509

Query: 227 SCTAIISG 234
           +   +I G
Sbjct: 510 ASNVVIWG 517


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/482 (40%), Positives = 313/482 (64%), Gaps = 4/482 (0%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
            E N+ T+ TVL+        E G+++HS +  +  E  + VG++L++MY K   + EAR
Sbjct: 6   VERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEAR 65

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL--QVEGMISNYVTYASVLTALSG 272
             FE +   +VVS +A+++ YAQ G    A+EL+R++    +GM  N VT+ ++L A S 
Sbjct: 66  AAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSF 125

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L AL  G+++H+ V      + +V+ N+L++ Y +CGSL  ++ VFD M  R VISW++M
Sbjct: 126 LGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSM 185

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  +++ G   E +EL++ M  E  + PD + +++VL  CS+ G+ +     F  IV   
Sbjct: 186 ISAFAQRGRVDEAMELYHRMLSEGTL-PDDIIFISVLFACSNSGVVEASGDFFRSIVG-D 243

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
              EP +EHY C+VD+LGRAG++ +A + ++ MPF P   +  ++L AC+++ +V+ GE 
Sbjct: 244 TQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEA 303

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
             + + E++PEN+  Y+ L+N+Y++A R +D  R+R+LM+E+ + K PG SWIE+   +H
Sbjct: 304 AAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVH 363

Query: 513 TFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLAL 572
            F A D+ HP R+E+ A++++L  + KEAGY  D   VL DV+E++KE +L  HSEKLA+
Sbjct: 364 EFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAI 423

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
            FGLI TP GAP+R++KNLR+C DCH   K +SKV GR++ +RD NRFHH ++G CSC D
Sbjct: 424 AFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCND 483

Query: 633 YW 634
           YW
Sbjct: 484 YW 485



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     Y T+L+      +L  G+RVH+ +        V + T L+  Y KC+ 
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM--LRSDTEPNEFTFATVL 166
           + +AR  F+++   NVVSW+AM++AY+Q  H+  AL L+  M   R    PN  TF T+L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +C+       G++IH+ + +  F++ + V ++L++ Y + G + +A+ VF+ +  RDV+
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           S +++IS +AQ G  +EA+EL+ ++  EG + + + + SVL A S
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACS 225



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 19  QQLTVPSFPPNPQNLKTLCSNGQLTKAL-----IEMATLGLEMRFEEYDTLLNACVNQRT 73
           ++++ P+       L     NG    AL     +  A  G+      + TLL+AC     
Sbjct: 69  EKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA 128

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+++HA + +  +   + +   L+ FY +C  L DA+ +FD MR R+V+SW++MISA
Sbjct: 129 LAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISA 188

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKSNFES 192
           ++Q+    EA+ L+ RML   T P++  F +VL +C+ +   E  G    S++  +  E 
Sbjct: 189 FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 248

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERD----VVSCTAIISGYAQLGLDEEAIELF 248
            +   + ++D+  +AG++ +A  +   +P        ++  +    Y  +   E A E+ 
Sbjct: 249 TLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVV 308

Query: 249 RKLQVEGMISNYVTYASVLTA 269
            +L  E   S Y+T A++ +A
Sbjct: 309 FELDPENS-SPYITLANIYSA 328



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +++ G+  N VTY +VL+  +   +L  G++VHS V    +   V++  +L++MY KC S
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVL 369
           +  +R  F+ +S   V+SW+AML  Y+++G  R  +EL+  M    K + P+ VT++ +L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
             CS  G    G  +   + +   GF+ ++     +V+  GR G +G+A
Sbjct: 121 DACSFLGALAEGRKIHAAVAE--RGFDTDLVVCNALVNFYGRCGSLGDA 167


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 332/559 (59%), Gaps = 6/559 (1%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139
           +HAH+IK+      ++  +L+  Y K     DA  +FDEM +++ VSW +++S  ++   
Sbjct: 67  IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126

Query: 140 SFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
             E L++F +M +SD+E   NEFTF +V+++C      + G  +H   +K      + V 
Sbjct: 127 LGECLSVFCKM-KSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVV 185

Query: 198 SSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           ++L++MY K G +  A  +F  +PE  + +VS  +I++  AQ G+  EA   F  ++V G
Sbjct: 186 NALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNG 245

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
              +  T  S+L A          + +H  +    +   + +  +L+++YSK G L  SR
Sbjct: 246 FFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSR 305

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VF+ +S+   ++W AML GY+ HG G+E +E F  +  E  ++PD VT+  +LS CSH 
Sbjct: 306 KVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHS 365

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G   F  + D     +P ++HY C+VD+LGR G + +A E IKNMPFEP + + G
Sbjct: 366 GLVKEGKYFFRVMSDVYK-VQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWG 424

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGACRVH N+D+G+   + L+ ++P +  NY++LSN+Y++AG W D ++VR LMK K 
Sbjct: 425 ALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKV 484

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           +T++ G S+IE    +H F   D +HP    +  K++++  K ++ G+V +   +L+DVD
Sbjct: 485 LTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVD 544

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE K  ++  HSEK+AL +GL+ T    P+ +IKNLRIC DCHN  KFVS V  R + +R
Sbjct: 545 EEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIR 604

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D  RFH    G CSCGDYW
Sbjct: 605 DTKRFHQFSGGLCSCGDYW 623



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 156/291 (53%), Gaps = 17/291 (5%)

Query: 55  EMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           E++  E+   ++++ACV+++    G  VH   +K      V +   L+  Y K   +  A
Sbjct: 142 ELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESA 201

Query: 113 RKMFDEM--RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
            ++F EM   E+++VSW ++++  +Q     EA N F  M  +   P++ T  ++L +C 
Sbjct: 202 FRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACE 261

Query: 171 GAFGFELGKQI---HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
               F LG+ +   H +I     + ++ + ++LL++Y+K GR++ +R VFE + + D V+
Sbjct: 262 ---NFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVA 318

Query: 228 CTAIISGYAQLGLDEEAIELF-RKLQVEGMISNYVTYASVLTALSGLAALGHGK---QVH 283
            TA+++GYA  G  +EAIE F R ++ EGM  ++VT+  +L+A S    +  GK   +V 
Sbjct: 319 WTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVM 378

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
           S V  +++   +   + ++D+  +CG L  +  +  NM  E     W A+L
Sbjct: 379 SDV--YKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALL 427



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 147/287 (51%), Gaps = 9/287 (3%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +T++     +    + + IH+ +IKS      ++G  L+  Y K G   +A  +F+ +P
Sbjct: 48  LSTLILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMP 107

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALSGLAALGHGK 280
           ++D VS  +++SG A++G   E + +F K++ +  +  N  T+ SV++A     A   G 
Sbjct: 108 KKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGY 167

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSK 338
            VH   ++  +   V + N+L++MY K G +  + R+F  M  SE++++SWN+++   ++
Sbjct: 168 YVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQ 227

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDGFEP 397
           +GM  E    F++MR  N   PD  T +++L  C +  +  R + V H ++  C  G + 
Sbjct: 228 NGMPNEAFNCFDMMR-VNGFFPDDATMVSLLQACENFPL-GRMVEVLHGVIFTC--GLDE 283

Query: 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
            +     ++++  + GR+  + +  + +  +P      ++L    +H
Sbjct: 284 NLTIVTTLLNLYSKLGRLNNSRKVFEEIS-KPDKVAWTAMLAGYAMH 329


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/629 (34%), Positives = 349/629 (55%), Gaps = 68/629 (10%)

Query: 72  RTLRGGQRVHAHMIKTCYR--PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           ++LR  +++ A + KTC    P V  +  L       + L  AR++F ++R  +V  +  
Sbjct: 16  KSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNT 75

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           +I   S       AL LF+ M R     P+ F+FA +L + A       G Q+H L +  
Sbjct: 76  LIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGY 135

Query: 189 NFESHIYVGSSLLDMYAKAG-------------------------------RIHEARGVF 217
             +SH++VG++L+ MYA+                                  + +A  VF
Sbjct: 136 GLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVF 195

Query: 218 ECLPERDVVSCTAIISGYAQLGLDE-------------------------------EAIE 246
            C+P R++ S   +++GY + G  +                               +A  
Sbjct: 196 RCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFA 255

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
            FR+++ EGM  N V+   VL+A +   A   G+ +H  V +      + + N+LID YS
Sbjct: 256 FFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYS 315

Query: 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366
           KCG+L  +R VFDNM  R+ +SW AM+ G + HG G E + LFN M EE+ +KPDS+T++
Sbjct: 316 KCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEM-EESNIKPDSITFI 374

Query: 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           ++L  CSH G+ D G + F  +V+   G EP IEHYGC+VD+ GRAG++ +A +F+  MP
Sbjct: 375 SILYACSHAGLVDLGCSYFSRMVNTY-GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP 433

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486
             P   +  +LLGAC +H N+ +   V ++L E++PEN+G++V+LSN+YA AG+W+DV  
Sbjct: 434 ISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAA 493

Query: 487 VRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK-EAGYVP 545
           +R  M  + + K PG S IE+++I+++F A ++ + +  E   K++++  + + E GYVP
Sbjct: 494 LRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVP 553

Query: 546 DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
           ++  VL+D++ E+KE  +  HSEKLA+ FG+   P G  IRV+KNLRIC DCH   K +S
Sbjct: 554 EVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLIS 613

Query: 606 KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KVY  ++ +RD++RFH    G+CSC DYW
Sbjct: 614 KVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 154/348 (44%), Gaps = 78/348 (22%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-- 121
           LL A  N R L  G ++H   +       +++ T LI  Y +C CL  ARK+FDEM E  
Sbjct: 112 LLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPN 171

Query: 122 -----------------------------RNVVSWTAMISAYSQKAHSFEALNLFIRM-L 151
                                        RN+ SW  M++ Y++      A  +F++M L
Sbjct: 172 IVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPL 231

Query: 152 RSDTE------------------------------PNEFTFATVLTSCAGAFGFELGKQI 181
           + D                                PNE +   VL++CA A  FE G+ +
Sbjct: 232 KDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRIL 291

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H  + KS F   I V ++L+D Y+K G +  AR VF+ +  R  VS TA+I+G A  G  
Sbjct: 292 HGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYG 351

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALS--GLAALG---HGKQVHSHVLRFEIPSYVV 296
           EEAI LF +++   +  + +T+ S+L A S  GL  LG     + V+++ +   I  Y  
Sbjct: 352 EEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHY-- 409

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTV----ISWNAMLVGYSKHG 340
               ++D+Y + G L   ++ +D + +  +    I W  +L   S HG
Sbjct: 410 --GCMVDLYGRAGKL---QQAYDFVCQMPISPNDIVWRTLLGACSIHG 452


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 328/570 (57%), Gaps = 3/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC     L   + V        Y   V++ + L+  Y++C  + DA ++FD M  ++ 
Sbjct: 118 LTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDH 177

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+W+ M++ +       EAL ++ RM       +E     V+ +C       +G  +H  
Sbjct: 178 VAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGR 237

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
            ++      + + +SL+DMYAK G    AR VF  +P R+ VS  A+ISG+AQ G  +EA
Sbjct: 238 FLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEA 297

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           ++LFR++   G+  +     S L A + +  L  GK +H  +LR  +    +L  +++DM
Sbjct: 298 LDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDM 356

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCGSL  +R++F+ +S R ++ WNAM+     HG G + + LF  +  E  +KPD  T
Sbjct: 357 YSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL-NETGIKPDHAT 415

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           + ++LS  SH G+ + G   F  ++  + G EP  +H  CVVD+L R+G V EA E + +
Sbjct: 416 FASLLSALSHSGLVEEGKFWFDRMI-TEFGIEPTEKHCVCVVDLLARSGLVEEANEMLAS 474

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M  EPT  I  +LL  C  +  +++GE + ++++E +PE+ G   ++SNLYA+A +W+ V
Sbjct: 475 MHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKV 534

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
             +R+LMK+    K PG S IE+    H F   D+SHP  +E+   + +LS + ++ GYV
Sbjct: 535 REIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYV 594

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P    V +D+DE+ KE++L  HSE+LA+ FGL+ T  G  + +IKNLR+C DCH+  K++
Sbjct: 595 PRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYI 654

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SK+  R++ +RD  RFHH  +G CSCGDYW
Sbjct: 655 SKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 3/274 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC      R G  VH   ++   R  V + T L+  Y K      AR++F  M  RN
Sbjct: 218 VIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRN 277

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW A+IS ++Q  H+ EAL+LF  M  S  +P+     + L +CA     +LGK IH 
Sbjct: 278 AVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHG 337

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++   E    +G+++LDMY+K G +  AR +F  L  RD+V   A+I+     G   +
Sbjct: 338 FILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHD 396

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QVHSHVLRFEIPSYVVLQNSLI 302
           A+ LF++L   G+  ++ T+AS+L+ALS    +  GK      +  F I         ++
Sbjct: 397 ALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVV 456

Query: 303 DMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVG 335
           D+ ++ G +  +  +  +M +E T+  W A+L G
Sbjct: 457 DLLARSGLVEEANEMLASMHTEPTIPIWVALLSG 490



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 171/358 (47%), Gaps = 18/358 (5%)

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           + +W A+++A S+      AL +F R L S   P+  TF   LT+CA     +  + +  
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
               + +   ++V S+LL +Y++ G + +A  VF+ +P +D V+ + +++G+   G   E
Sbjct: 136 RAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVE 195

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ ++ +++  G+  + V    V+ A +       G  VH   LR  +   VV+  SL+D
Sbjct: 196 ALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVD 255

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+K G    +R+VF  M  R  +SWNA++ G++++G   E ++LF  M   + ++PDS 
Sbjct: 256 MYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREM-STSGLQPDSG 314

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-----VVDMLGRAGRVGEA 418
             ++ L  C+  G    G ++         GF      + C     V+DM  + G +  A
Sbjct: 315 ALVSALLACADVGFLKLGKSIH--------GFILRRLEFQCILGTAVLDMYSKCGSLESA 366

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNL 474
            +    +       +  +++  C  H        + Q L E  I+P++A    +LS L
Sbjct: 367 RKLFNKLSSRDL-VLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 423



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG   +AL    EM+T GL+       + L AC +   L+ G+ +H  +++      + L
Sbjct: 291 NGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCI-L 349

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T ++  Y+KC  L  ARK+F+++  R++V W AMI+         +AL LF  +  +  
Sbjct: 350 GTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGI 409

Query: 156 EPNEFTFATVLTSCAGAFGFELGK-QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           +P+  TFA++L++ + +   E GK     +I +   E        ++D+ A++G + EA 
Sbjct: 410 KPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEAN 469

Query: 215 GVFECL-PERDVVSCTAIISG 234
            +   +  E  +    A++SG
Sbjct: 470 EMLASMHTEPTIPIWVALLSG 490


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/604 (34%), Positives = 341/604 (56%), Gaps = 36/604 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C  +++      +H+ +IK  +     L   L+  Y KC  +  A ++FDEM  R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++++A+++       L++   M   D  +P+ F FA ++ +C+      LGKQ+H+
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             + S F     V SSL+DMY K G+  EAR VF+ +  ++ VS T++ISGYA+ G   E
Sbjct: 130 RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 244 AIELFRKLQVEGMIS--------------------------------NYVTYASVLTALS 271
           A++LF +  V  + S                                + +  +SV+   +
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA L  GKQ+H  V+     S + + N+L+DMY+KC  +  ++ +F  M  + VISW +
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++VG ++HG   E + L++ M   +++KP+ VT++ +L  CSH G+  RG  +F  +   
Sbjct: 310 IIVGTAQHGKAEEALTLYDEM-VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT-T 367

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                P ++HY C++D+L R+G + EA   +  +PF+P      SLL AC  H N+++G 
Sbjct: 368 DYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGV 427

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            +  R+++++PE+   Y++LSN+YA A  W  V++VR+LM    V K+PG S I+  +  
Sbjct: 428 RIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDS 487

Query: 512 HTFHASDR-SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
             FHA +   HPM+ E+   +K L  + ++ GYVP+ S VLYD+++++KEK L  HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GL+    G  IR++KNLRIC DCHN  KF+S +  R++ +RD  R+HH  EG CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 631 GDYW 634
            D+W
Sbjct: 608 NDFW 611



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 34/297 (11%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           F   L  CA         ++HS IIK+ F+    + ++LLD+Y K G I +A  +F+ +P
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALGHGK 280
            RD VS  +I++ + +  +    + +   +   +G+  ++  +A ++ A S L  L  GK
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           QVH+  +        V+++SLIDMY+KCG    +R VFD++  +  +SW +M+ GY++ G
Sbjct: 126 QVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSG 185

Query: 341 MGREVVE-------------------------------LFNLMREENKVKPDSVTYLAVL 369
              E ++                               LFN MR E     D +   +V+
Sbjct: 186 RKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVV 245

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            GC++  + + G  +   ++    GFE  +     +VDM  +   +  A +    MP
Sbjct: 246 GGCANLALLELGKQIHGLVIAL--GFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 55  EMRFEEYD--------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           EMR E  D        +++  C N   L  G+++H  +I   +   +++   L+  Y KC
Sbjct: 227 EMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKC 286

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +  A+ +F  M  ++V+SWT++I   +Q   + EAL L+  M+ S  +PNE TF  +L
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346

Query: 167 TSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +C+ A     G+++  S+    +    +   + LLD+ +++G + EA  + + +P
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIP 402


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 339/571 (59%), Gaps = 10/571 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           +N+C +    R    +HA + K+      ++  +L+  YNK     DA K+FD+M  +++
Sbjct: 49  VNSCPSISNCR---EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDL 105

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++IS +S+  H   +L  F  M      +PNE T  +++++C+GA   + GK IH 
Sbjct: 106 VSWNSLISGFSRCLHM--SLTAFYTMKFEMSVKPNEVTILSMISACSGAL--DAGKYIHG 161

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             IK      + V +SL++MY K+G +  A  +FE +P+ + VS  +II+     G   E
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
            I+ F K++  G+  +  T  ++L A   L      + +H  +      + + +  +L+D
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
            Y+K G L+ S  VF  +     ++W AML GY+ HG+GRE ++LF  M  +  ++PD V
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG-LEPDHV 340

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+  +LS CSH G+ + G + F+ + +   G EP ++HY C+VD+LGR G + +A E I+
Sbjct: 341 TFTHLLSACSHSGLVNEGKSYFNVMSEVY-GIEPRVDHYSCMVDLLGRCGLLNDAYEVIQ 399

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           NMP EP A + G+LLGACRVH N+++G+ V + L+ +EP +  NY++LSN+Y+++  W+D
Sbjct: 400 NMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKD 459

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
             +VR L+KE+ + + PG S IE     H F   DRSHP  E++ +K+++L  K ++AGY
Sbjct: 460 AAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY 519

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
                 VL DV+EE KE ++  HSEKLA+ FGL+ + EG  + + KNLRIC DCH+ AK 
Sbjct: 520 SSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKL 579

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +S +  R + +RD  RFHH  +G CSC DYW
Sbjct: 580 ISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 42/281 (14%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+E        LL AC++    +  + +H  M  T +   + + T L+  Y K  
Sbjct: 228 KMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG 287

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            LS +  +F E+   + V+WTAM++ Y+      EA+ LF  M     EP+  TF  +L+
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+           HS ++          G S  ++ ++         V+   P  D  S
Sbjct: 348 ACS-----------HSGLVNE--------GKSYFNVMSE---------VYGIEPRVDHYS 379

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
           C   + G  + GL  +A E+ + + +E    N   + ++L A      +  GK+V  H++
Sbjct: 380 CMVDLLG--RCGLLNDAYEVIQNMPME---PNAGVWGALLGACRVHGNIELGKEVAEHLI 434

Query: 288 RFEIP----SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
             E P    +Y++L N    MYS   S   + +V   + ER
Sbjct: 435 NME-PLDPRNYIMLSN----MYSASRSWKDAAKVRALLKER 470



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           +++L A++   ++ + +++H+ V +  +     + + L+  Y+K G    + ++FD+M  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + ++SWN+++ G+S+       +  F  M+ E  VKP+ VT L+++S CS  G  D G  
Sbjct: 103 KDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKY 158

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           +       K G   E++    +++M G++G +  A    + +P +P      S++ A
Sbjct: 159 IHG--FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/513 (38%), Positives = 327/513 (63%), Gaps = 3/513 (0%)

Query: 109 LSDARKMFDEMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVL 166
           +S A K+F ++ +  NV  W  +I  Y++  +S  A +L+  M  S   EP+  T+  ++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
            +        LG+ IHS++I+S F S IYV +SLL +YA  G +  A  VF+ +PE+D+V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           +  ++I+G+A+ G  EEA+ L+ ++  +G+  +  T  S+L+A + + AL  GK+VH ++
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  +   +   N L+D+Y++CG +  ++ +FD M ++  +SW +++VG + +G G+E +
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           ELF  M     + P  +T++ +L  CSH GM   G   F  + + +   EP IEH+GC+V
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE-EYKIEPRIEHFGCMV 367

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
           D+L RAG+V +A E+IK+MP +P   I  +LLGAC VH + D+ EF   +++++EP ++G
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREE 526
           +YV+LSN+YAS  RW DV ++R+ M    V K PG S +E+   +H F   D+SHP  + 
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 527 LSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIR 586
           + AK+K+++ + +  GYVP +S V  DV+EE+KE  ++ HSEK+A+ F LI TPE +PI 
Sbjct: 488 IYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPIT 547

Query: 587 VIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNR 619
           V+KNLR+C DCH   K VSKVY R++ +RD++R
Sbjct: 548 VVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 161/297 (54%), Gaps = 4/297 (1%)

Query: 48  EMATLGL-EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           EM   GL E     Y  L+ A      +R G+ +H+ +I++ +   +Y++  L+  Y  C
Sbjct: 110 EMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC 169

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             ++ A K+FD+M E+++V+W ++I+ +++     EAL L+  M     +P+ FT  ++L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLL 229

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++CA      LGK++H  +IK     +++  + LLD+YA+ GR+ EA+ +F+ + +++ V
Sbjct: 230 SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQ-VEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           S T++I G A  G  +EAIELF+ ++  EG++   +T+  +L A S    +  G +    
Sbjct: 290 SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRR 349

Query: 286 VL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
           +   ++I   +     ++D+ ++ G +  +     +M  +  V+ W  +L   + HG
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/600 (36%), Positives = 338/600 (56%), Gaps = 40/600 (6%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMIS 132
           +L+  + VHA +++       YL  +++ F       + + ++F + +E N+  +  MI 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
                    E++ ++  M +    P+ FTF  +L +CA     +LG ++H L++K+  ES
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY----------------- 235
             +V +SL+ +Y K G I  A  VF+ +PE++V + TAIISGY                 
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 236 ---------------------AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
                                A  GL +EA++LF K+  EG   +      VL A + L 
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
           AL  G    + + R E     VL  +LIDMY+KCG +  +  VF  M ++ ++ WNA + 
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAIS 321

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           G +  G  +    LF  M E++ ++PD  T++ +L  C+H G+ D G   F+ +      
Sbjct: 322 GLAMSGHVKAAFGLFGQM-EKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFT- 379

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
             PEIEHYGC+VD+LGRAG + EA + +K+MP E  A + G+LLG CR+H +  + E V 
Sbjct: 380 LTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVL 439

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           ++L+ +EP N+GNYV+LSN+Y+++ +WED  ++R +M E+ + K PG SWIE+D ++H F
Sbjct: 440 KQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEF 499

Query: 515 HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTF 574
              D SHP+ E++ AK+ +L    K +GYVP    VL+D++EE+KE  +  HSEKLA+ F
Sbjct: 500 LVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAF 559

Query: 575 GLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GLI T     IRV+KNLR+C DCH   K +S+  GR++ +RD NRFH   +G+CSC DYW
Sbjct: 560 GLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 40/316 (12%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL AC      + G ++H  ++K       ++ T L+  Y KC  + +A K+FD++ E+N
Sbjct: 114 LLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKN 173

Query: 124 VVSWTA--------------------------------------MISAYSQKAHSFEALN 145
           V +WTA                                      MI  Y+      EAL+
Sbjct: 174 VAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALD 233

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +ML     P+ +    VL +CA     ELG    +L+ ++ F  +  +G++L+DMYA
Sbjct: 234 LFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYA 293

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           K GR+  A  VF  + ++D+V   A ISG A  G  + A  LF +++  G+  +  T+  
Sbjct: 294 KCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVG 353

Query: 266 VLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-E 323
           +L A +    +  G+Q  + + R F +   +     ++D+  + G L  + ++  +M  E
Sbjct: 354 LLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPME 413

Query: 324 RTVISWNAMLVGYSKH 339
              I W A+L G   H
Sbjct: 414 ANAIVWGALLGGCRLH 429



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
             G  +L H K VH+ +LR  +     L N ++      G+  YS R+F    E  +  +
Sbjct: 17  FQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLF 76

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV-FHEI 388
           N M+ G   +   +E +E+++ MR+E  + PDS T+  +L  C+   + D  L +  H +
Sbjct: 77  NTMIHGLVLNDSFQESIEIYHSMRKEG-LSPDSFTFPFLLKACAR--LLDSKLGIKLHGL 133

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA---AILGSLLGACRVHY 445
           V  K G E +      +V + G+ G +  A +   ++P +  A   AI+   +G  +   
Sbjct: 134 V-VKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCRE 192

Query: 446 NVDI 449
            +D+
Sbjct: 193 AIDM 196


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 330/562 (58%), Gaps = 4/562 (0%)

Query: 74  LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           L  G+  HA+ IK      + +   L+  Y KC  +  + K+F+ M  R+ +SWT +++ 
Sbjct: 383 LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILAC 442

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           ++Q +   EAL + + + +     +     ++L +C G     L KQ+H   I++     
Sbjct: 443 FAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDL 502

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           I + + L+D+Y + G    +  +F+ + ++D+VS T++I+     G    A+ LF ++Q 
Sbjct: 503 I-LENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK 561

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
             +  + V   S+L A++GL++L  GKQVH  ++R   P    + +SL+DMYS CGS+ Y
Sbjct: 562 ANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNY 621

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF+    + V+ W AM+     HG G++ ++LF  M +   + PD V++LA+L  CS
Sbjct: 622 AIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTG-LTPDHVSFLALLYACS 680

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H  + + G   + +I+  K   +P  EHY CVVD+LGR+G+  EA EFIK MP +P +A+
Sbjct: 681 HSKLVEEG-KHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAV 739

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             +LLGACRVH N  +      +L+E+EP+N GNY+++SN++A  G+W +    R  M E
Sbjct: 740 WCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAE 799

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF-KEAGYVPDMSCVLY 552
           + + K+P  SWIE+   +HTF + D  H   E +  K+ +++    +E GYV D   VL+
Sbjct: 800 RGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLH 859

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           D  EE+K  +L  HSE++A+ FGLI T  G PIR+ KNLR+C DCH F K VSK++ R +
Sbjct: 860 DTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDI 919

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD NRFHH   G+CSC D+W
Sbjct: 920 VVRDANRFHHFSGGSCSCEDFW 941



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 183/352 (51%), Gaps = 13/352 (3%)

Query: 32  NLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY-- 89
           +LK LC  G L +AL ++ T     R E Y  +L+    +R    G++VHAH + T    
Sbjct: 32  SLKRLCKEGDLRQALRQLTTRAPPAR-EHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLN 90

Query: 90  -RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                +L T+L+  Y +C  + DAR++F+ M  R V SW A++ AY     + EA+ ++ 
Sbjct: 91  EDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYG 150

Query: 149 RMLRS---DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
            M  S    + P+  T A+VL +C        G ++H L +K   +    V ++L+ MYA
Sbjct: 151 AMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYA 210

Query: 206 KAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           K G +  A  VFE L +  RDV S  +++SG  Q G   EA+ LFR +Q  G   N  T 
Sbjct: 211 KCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTS 270

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ-NSLIDMYSKCGSLTYSRRVFDNMS 322
            +VL   + L  L  G+++H+ +L+    S + +Q N+L+ MY+K G +  + RVF  ++
Sbjct: 271 VAVLQVCAELGLLSLGRELHAALLK--CGSELNIQCNALLVMYAKYGRVDSALRVFGQIA 328

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           E+  ISWN+ML  Y ++    E ++ F  M +    +PD    +++ S   H
Sbjct: 329 EKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHG-FQPDHACVVSLSSALGH 379



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 176/334 (52%), Gaps = 6/334 (1%)

Query: 39  NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+  +AL     M + G  M       +L  C     L  G+ +HA ++K C       
Sbjct: 245 NGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK-CGSELNIQ 303

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+V Y K   +  A ++F ++ E++ +SW +M+S Y Q +   EA++ F  ML+   
Sbjct: 304 CNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGF 363

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           +P+     ++ ++         G++ H+  IK    + + VG++L+DMY K G I  +  
Sbjct: 364 QPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAK 423

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           VFE +  RD +S T I++ +AQ     EA+E+  +LQ EG++ + +   S+L    GL +
Sbjct: 424 VFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKS 483

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +   KQVH + +R  +   ++L+N LID+Y +CG   +S  +F  + ++ ++SW +M+  
Sbjct: 484 ISLLKQVHCYAIRNGLLD-LILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINC 542

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            + +G     V LF  M++ N ++PDSV  +++L
Sbjct: 543 CTNNGRLNGAVFLFTEMQKAN-IQPDSVALVSIL 575



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 17/167 (10%)

Query: 263 YASVLTALSGLAALGHGKQVHSHVL---RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           Y  VL  ++   A   G+QVH+H +            L   L+ MY +CG +  +RR+F+
Sbjct: 60  YGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFN 119

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK--VKPDSVTYLAVLSGC----- 372
            M  RTV SWNA++  Y   G   E + ++  MR        PD  T  +VL  C     
Sbjct: 120 GMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGD 179

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
              G E  GLAV       K G +        ++ M  + G +  AL
Sbjct: 180 GRCGGEVHGLAV-------KVGLDKSTLVANALIGMYAKCGLLDSAL 219


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/606 (36%), Positives = 346/606 (57%), Gaps = 13/606 (2%)

Query: 39   NGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
            NG L  +L    EM   G+      + T L AC     L  G ++H   +K  +   V +
Sbjct: 456  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 515

Query: 96   RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
               L+  Y+KC  +++A K+F  + +R+++SW AMI+ +    +  +AL+ F  M  ++ 
Sbjct: 516  GNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANI 575

Query: 156  E--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--SHIYVGSSLLDMYAKAGRIH 211
            +  P+EFT  ++L +C+       GKQIH  +++S F   S   +  SL+D+Y K G + 
Sbjct: 576  KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLF 635

Query: 212  EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
             AR  F+ + E+ ++S +++I GYAQ G   EA+ LF++LQ      +    +S++   +
Sbjct: 636  SARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFA 695

Query: 272  GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
              A L  GKQ+ +  ++        + NS++DMY KCG +  + + F  M  + VISW  
Sbjct: 696  DFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 755

Query: 332  MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
            ++ GY KHG+G++ V +F  M   N ++PD V YLAVLS CSH GM   G  +F ++++ 
Sbjct: 756  VITGYGKHGLGKKSVRIFYEMLRHN-IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLET 814

Query: 392  KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
              G +P +EHY CVVD+LGRAGR+ EA   I  MP +P   I  +LL  CRVH ++++G+
Sbjct: 815  H-GIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 873

Query: 452  FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
             VG+ L+ I+ +N  NYV++SNLY  AG W +    REL   K + K+ G SW+E+++ +
Sbjct: 874  EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 933

Query: 512  HTFHASDRSHPMREELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
            H F + + SHP+   +   +K+   + +E  GYV  +   L+D+D+E KE+ L  HSEKL
Sbjct: 934  HFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKL 993

Query: 571  ALTFGLIG---TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
            A+   L       +G  IRV KNLR+CVDCH F K +SK+      +RD  RFH   +G 
Sbjct: 994  AIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGC 1053

Query: 628  CSCGDY 633
            CSCGDY
Sbjct: 1054 CSCGDY 1059



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 7/324 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y KC     A K+FD M ERNVVSW+A++S +        +L+LF  M R    PN
Sbjct: 418 LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPN 477

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
           EFTF+T L +C      E G QIH   +K  FE  + VG+SL+DMY+K GRI+EA  VF 
Sbjct: 478 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR 537

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS--NYVTYASVLTALSGLAAL 276
            + +R ++S  A+I+G+   G   +A++ F  +Q   +    +  T  S+L A S    +
Sbjct: 538 RIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI 597

Query: 277 GHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLV 334
             GKQ+H  ++R  F  PS   +  SL+D+Y KCG L  +R+ FD + E+T+ISW+++++
Sbjct: 598 YAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLIL 657

Query: 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           GY++ G   E + LF  ++E N  + DS    +++   +   +  +G  +    V    G
Sbjct: 658 GYAQEGEFVEAMGLFKRLQELNS-QIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSG 716

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEA 418
            E  +     VVDM  + G V EA
Sbjct: 717 LETSV--LNSVVDMYLKCGLVDEA 738


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 332/546 (60%), Gaps = 2/546 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  +L  C   R +  G+++H+  +KT +   +Y+   LI  Y+K  
Sbjct: 335 QMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG 394

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++ + ++E++VVSWT+MI+ Y Q     +AL  F  M +    P+    A+ ++
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CAG      G QIH+ I  S +   + + ++L+++YA+ GRI EA   FE +  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++SG+AQ GL EEA+++F ++   G+  N  T+ S L+A + LA +  GKQ+H+ V+
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +        + N+LI +Y KCGS   ++  F  MSER  +SWN ++   S+HG G E ++
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL+ F  + D + G  P  +HY CV+D
Sbjct: 635 LFDQMKKEG-IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD-EYGIRPRPDHYACVID 692

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           + GRAG++  A +FI+ MP    A +  +LL AC+VH N+++GEF  + L+E+EP ++ +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA   +W +  +VR++M+++ V K+PGRSWIE+  ++H F   DR HP+ E++
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              +  ++ +  + GY  +   + +D ++E ++   L HSEKLA+TFGL+  P   P+RV
Sbjct: 813 YNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 588 IKNLRI 593
           IKNLR+
Sbjct: 873 IKNLRV 878



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 204/375 (54%), Gaps = 4/375 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   GL        +LL AC +   L+ G ++H+++ K        +   L+  Y KC 
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F+     NVV W  M+ A+ Q     ++  LF +M  +   PN+FT+  +L 
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C      +LG+QIHSL +K+ FES +YV   L+DMY+K G + +AR V E L E+DVVS
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+GY Q    ++A+  F+++Q  G+  + +  AS ++  +G+ A+  G Q+H+ + 
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                  V + N+L+++Y++CG +  +   F+ +  +  I+WN ++ G+++ G+  E ++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALK 533

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F  M +++ VK +  T+++ LS  ++     +G  +   ++     FE E+ +   ++ 
Sbjct: 534 VFMRM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALIS 590

Query: 408 MLGRAGRVGEA-LEF 421
           + G+ G   +A +EF
Sbjct: 591 LYGKCGSFEDAKMEF 605



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 182/328 (55%), Gaps = 6/328 (1%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y+K   +  AR++F+E+  R+ VSW AM+S Y+Q     EAL L+ +M R+   P 
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            +  ++VL+SC  A  F  G+ IH+   K  F S I+VG++++ +Y + G    A  VF 
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +P RD V+   +ISG+AQ G  E A+E+F ++Q  G+  + VT +S+L A + L  L  
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G Q+HS++ +  I S  +++ SL+D+Y KCG +  +  +F++     V+ WN MLV + +
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
                +  ELF  M+    ++P+  TY  +L  C+     D G  +    +  K GFE +
Sbjct: 323 INDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS--LSVKTGFESD 379

Query: 399 IEHYGCVVDMLGRAGRVGEA---LEFIK 423
           +   G ++DM  + G + +A   LE +K
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLK 407



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 3/357 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L++C        G+ +HA   K  +   +++   +I  Y +C     A ++F +M  R
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T +++L +CA     + G Q+H
Sbjct: 208 DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S + K+   S   +  SLLD+Y K G +  A  +F      +VV    ++  + Q+    
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ ELF ++Q  G+  N  TY  +L   +    +  G+Q+HS  ++    S + +   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  +RRV + + E+ V+SW +M+ GY +H   ++ +  F  M ++  + PD+
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDN 446

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           +   + +SGC+      +GL +   I     G+  ++  +  +V++  R GR+ EA 
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARCGRIREAF 501



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 191/426 (44%), Gaps = 46/426 (10%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFEL 177
           M  R   S    ++ +       + L+LF    R         FA  L +C G    +++
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +IH+  +      +  VG+ L+D+Y+K G +  AR VFE L  RD VS  A++SGYAQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL EEA+ L+R++   G++      +SVL++ +       G+ +H+   +    S + +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I +Y +CGS   + RVF +M  R  +++N ++ G+++ G G   +E+F  M + + 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSG 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD VT  ++L+ C+  G   +G  +   +   K G   +    G ++D+  + G V  
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLF--KAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 418 ALEFIKN-----------------------MPFE-----------PTAAILGSLLGACRV 443
           AL    +                         FE           P       +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
              +D+GE +    ++   E +  YV  +L ++Y+  G  E   RV E++KEK V     
Sbjct: 358 TREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV---- 412

Query: 502 RSWIEL 507
            SW  +
Sbjct: 413 -SWTSM 417



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M   G++     + + L+A  N   ++ G+++HA +IKT +     +   LI  Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC    DA+  F EM ERN VSW  +I++ SQ     EAL+LF +M +   +PN+ TF 
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 164 TVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VL +C+     E G     S+  +          + ++D++ +AG++  A+   E +P
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/512 (42%), Positives = 304/512 (59%), Gaps = 33/512 (6%)

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           D  P+ FT + VL +C        GK IH L  K  F S++++ + +L++Y   G + +A
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 214 RGVFECLPERDVV-------------------------------SCTAIISGYAQLGLDE 242
             +FE +P+RD V                               S T++ISG+ Q G   
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI+LF KL+ E +  N VT  SVL A + L  L  G+ VH +  +      V + N+LI
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLI 184

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY KCG L  +RRVF  M ERTV+SW+AM+ G + HG   E + LF+ M +   VKP+ 
Sbjct: 185 DMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG-VKPNG 243

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ +L  CSH G+ D G   F  +     G  P+IEHYGCVVD+  RAG + EA EFI
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMT-ADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI 302

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
            +MP +P   + G+LLG C+VH N+D+ E   + L E++P N G YV++SN+YA A RWE
Sbjct: 303 LSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           D  RVR+LMK++ V K  G S I ++ ++H F A D++HP  E++     +L VK K  G
Sbjct: 363 DAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRG 422

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P  S VL D++E++KEK L  HSEKLA+ FGL+ TPEG PIR++KNLR+C DCH   K
Sbjct: 423 YAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALK 482

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +S +  R++ +RD+NRFH   +G CSC D+W
Sbjct: 483 IISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 33/309 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER- 122
           +L AC+    +  G+ +H    K  +   ++L+  ++  Y  C  + DA  +F++M +R 
Sbjct: 16  VLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRD 75

Query: 123 ------------------------------NVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                                         NV SWT+MIS + Q     EA++LF+++  
Sbjct: 76  AVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLED 135

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
               PNE T  +VL +CA     +LG+ +H    KS F+ +++V ++L+DMY K G +  
Sbjct: 136 EAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLEN 195

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           AR VF  + ER VVS +A+I+G A  G  EEA+ LF ++   G+  N VT+  +L A S 
Sbjct: 196 ARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSH 255

Query: 273 LAALGHGKQVH-SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWN 330
           +  +  G++   S    + +   +     ++D++S+ G L  +     +M  +   + W 
Sbjct: 256 MGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWG 315

Query: 331 AMLVGYSKH 339
           A+L G   H
Sbjct: 316 ALLGGCKVH 324



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 5/195 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   L  G+ VH +  K+ ++  V++   LI  Y KC CL +AR++F EM ER
Sbjct: 147 SVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEER 206

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW+AMI+  +    + EAL LF  M++   +PN  TF  +L +C+     + G++  
Sbjct: 207 TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFF 266

Query: 183 -SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG---YAQ 237
            S+         I     ++D++++AG + EA      +P + + V   A++ G   +  
Sbjct: 267 ASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKN 326

Query: 238 LGLDEEAIELFRKLQ 252
           + L EEAI+   +L 
Sbjct: 327 IDLAEEAIKHLSELD 341


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 346/611 (56%), Gaps = 39/611 (6%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD 117
           FE   + L  C  +  L+   ++HA M+K+      Y  T+ + F       S A  +F 
Sbjct: 11  FEHNLSCLQKCPTEVELK---QIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFF 67

Query: 118 EMRER-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
              +R +   W  MI   S       +L L+ RML      N +TF  +L +C+    F+
Sbjct: 68  NGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQ 127

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYA------------------------------- 205
              QIH+ I K  +   IY  +SL++ YA                               
Sbjct: 128 ETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYV 187

Query: 206 KAGRIHEARGVFECLPERD-VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
           KAG +  A  +F  +PE++  +S T +ISGY Q G+++EA++LF ++Q   +  + V+ A
Sbjct: 188 KAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLA 247

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           S L+A S L AL  GK +HS+  +       VL   LIDMY+KCG +  +  VF NM  +
Sbjct: 248 SALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTK 307

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
           +V  W A++ GY+ HG+GRE +  F L  +   VKP+++T+ AVL+ CS+ G+ + G +V
Sbjct: 308 SVQVWTALISGYAYHGLGREAISKF-LEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSV 366

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           F+ I +     +P IEHYGC+VD+LGRAG + EA  FI+ MP +P A I GSLL AC++H
Sbjct: 367 FNTI-ERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIH 425

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            N+++GE +G+ L+E++  + G YV ++N++A   +W+     R LM+E+ V K PG S 
Sbjct: 426 KNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSA 485

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD-VDEEQKEKVL 563
           I L+   H F A DRSH   +E+  K + +  K +E GYVP++  +L D VD+E+KE ++
Sbjct: 486 ISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIV 545

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+T+GL+ T  G  IR++KNLR+C DCH     +SK+Y R + +RD+ RFHH 
Sbjct: 546 HQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHF 605

Query: 624 VEGTCSCGDYW 634
            +G CSCGDYW
Sbjct: 606 KDGKCSCGDYW 616


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/576 (40%), Positives = 352/576 (61%), Gaps = 8/576 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y+ LL A    + L    +VHAH+I + Y    +L T+L+        +S  R++F  + 
Sbjct: 15  YNLLLQAGPRLKLL---HQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVP 71

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFI--RMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
             +   +T++I + S K H+F   +L+   RM+ S+  P+ +TF +V+ SCA       G
Sbjct: 72  NPDSFLFTSLIRSTS-KFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHG 130

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH  ++ + F S +YV ++L+  Y K G +  AR VF+ + +R VV+  ++ISGY Q 
Sbjct: 131 RIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQN 190

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  +EAI LF +++  G+  N  T+ SVL+A + L A   G  VH + +   +   VVL 
Sbjct: 191 GFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLG 250

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SLI+MY++CG+++ +R VFD+M ER V++W AM+ GY  +G G + VELF+ MR  N +
Sbjct: 251 TSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR-NGL 309

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+S+T++AVLS C+H G+ + G  VF  + + +    PE+EH+ C+VDMLGRAG + EA
Sbjct: 310 LPNSITFVAVLSACAHAGLVNEGRRVFESMRE-EYRLVPEVEHHVCLVDMLGRAGLLDEA 368

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
             FIK +  EP  AI  ++LGAC++H N  +G  V +  +  EP N  +YVILSN+YA A
Sbjct: 369 YNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALA 428

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           GR + V  VR+ M  K + K  G S I+LD+  + F   D+SH    E+   + QL  K 
Sbjct: 429 GRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKC 488

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           +EAGYV     V+++++EE++E  L  HSEKLA+ FGL+ T  G  IR++KNLR+C DCH
Sbjct: 489 REAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCH 548

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +  K++S +  R++ +RDK RFHH   G+CSC DYW
Sbjct: 549 SAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 54/304 (17%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +G+E     + ++L+AC +      G  VH + +       V L T LI  Y +C  
Sbjct: 203 MKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGN 262

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           +S AR++FD M+ERNVV+WTAMIS Y    +  +A+ LF  M R+   PN  TF  VL++
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSA 322

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER----- 223
           C                                   A AG ++E R VFE + E      
Sbjct: 323 C-----------------------------------AHAGLVNEGRRVFESMREEYRLVP 347

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V     ++    + GL +EA    +++  E   +    + ++L A       G G QV 
Sbjct: 348 EVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPA---IWTAMLGACKMHKNFGLGAQVA 404

Query: 284 SHVLRFEIPS---YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
            H L  E  +   YV+L N    +Y+  G +     V DNM  + +       VGYS   
Sbjct: 405 EHRLASEPGNPAHYVILSN----IYALAGRMDQVEMVRDNMIRKCL----KKQVGYSTID 456

Query: 341 MGRE 344
           + R+
Sbjct: 457 LDRK 460


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 332/546 (60%), Gaps = 2/546 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  +L  C   R +  G+++H+  +KT +   +Y+   LI  Y+K  
Sbjct: 335 QMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG 394

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++ + ++E++VVSWT+MI+ Y Q     +AL  F  M +    P+    A+ ++
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CAG      G QIH+ I  S +   + + ++L+++YA+ GRI EA   FE +  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEIT 514

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++SG+AQ GL EEA+++F ++   G+  N  T+ S L+A + LA +  GKQ+H+ V+
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +        + N+LI +Y KCGS   ++  F  MSER  +SWN ++   S+HG G E ++
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL+ F  + D + G  P  +HY CV+D
Sbjct: 635 LFDQMKKEG-IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD-EYGIRPRPDHYACVID 692

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           + GRAG++  A +FI+ MP    A +  +LL AC+VH N+++GEF  + L+E+EP ++ +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA   +W +  +VR++M+++ V K+PGRSWIE+  ++H F   DR HP+ E++
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              +  ++ +  + GY  +   + +D ++E ++   L HSEKLA+TFGL+  P   P+RV
Sbjct: 813 YNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 588 IKNLRI 593
           IKNLR+
Sbjct: 873 IKNLRV 878



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 209/387 (54%), Gaps = 5/387 (1%)

Query: 37  CSNGQLTKALIE-MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           C +G+    + E M   GL        +LL AC +   L+ G ++H+++ K        +
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  +  A  +F+     NVV W  M+ A+ Q     ++  LF +M  +  
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            PN+FT+  +L +C      +LG+QIHSL +K+ FES +YV   L+DMY+K G + +AR 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           V E L E+DVVS T++I+GY Q    ++A+  F+++Q  G+  + +  AS ++  +G+ A
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  G Q+H+ +        V + N+L+++Y++CG +  +   F+ +  +  I+WN ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           +++ G+  E +++F  M +++ VK +  T+++ LS  ++     +G  +   ++     F
Sbjct: 522 FAQSGLHEEALKVFMRM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 396 EPEIEHYGCVVDMLGRAGRVGEA-LEF 421
           E E+ +   ++ + G+ G   +A +EF
Sbjct: 581 ETEVGN--ALISLYGKCGSFEDAKMEF 605



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 195/368 (52%), Gaps = 7/368 (1%)

Query: 60  EYDTLLNACV-NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           ++   L AC  N R  +    +HA  +         +   LI  Y+K   +  AR++F+E
Sbjct: 43  DFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEE 102

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +  R+ VSW AM+S Y+Q     EAL L+ +M R+   P  +  ++VL+SC  A  F  G
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH+   K  F S I+VG++++ +Y + G    A  VF  +P RD V+   +ISG+AQ 
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  E A+E+F ++Q  G+  + VT +S+L A + L  L  G Q+HS++ +  I S  +++
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIME 282

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL+D+Y KCG +  +  +F++     V+ WN MLV + +     +  ELF  M+    +
Sbjct: 283 GSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG-I 341

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P+  TY  +L  C+     D G  +    +  K GFE ++   G ++DM  + G + +A
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHS--LSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 419 ---LEFIK 423
              LE +K
Sbjct: 400 RRVLEMLK 407



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 3/357 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L++C        G+ +HA   K  +   +++   +I  Y +C     A ++F +M  R
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T +++L +CA     + G Q+H
Sbjct: 208 DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S + K+   S   +  SLLD+Y K G +  A  +F      +VV    ++  + Q+    
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ ELF ++Q  G+  N  TY  +L   +    +  G+Q+HS  ++    S + +   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  +RRV + + E+ V+SW +M+ GY +H   ++ +  F  M ++  + PD+
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDN 446

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           +   + +SGC+      +GL +   I     G+  ++  +  +V++  R GR+ EA 
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARCGRIREAF 501



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 191/426 (44%), Gaps = 46/426 (10%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFEL 177
           M  R   S    ++ +       + L+LF    R         FA  L +C G    +++
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +IH+  +      +  VG+ L+D+Y+K G +  AR VFE L  RD VS  A++SGYAQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL EEA+ L+R++   G++      +SVL++ +       G+ +H+   +    S + +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I +Y +CGS   + RVF +M  R  +++N ++ G+++ G G   +E+F  M + + 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSG 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD VT  ++L+ C+  G   +G  +   +   K G   +    G ++D+  + G V  
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLF--KAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 418 ALEFIKN-----------------------MPFE-----------PTAAILGSLLGACRV 443
           AL    +                         FE           P       +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
              +D+GE +    ++   E +  YV  +L ++Y+  G  E   RV E++KEK V     
Sbjct: 358 TREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV---- 412

Query: 502 RSWIEL 507
            SW  +
Sbjct: 413 -SWTSM 417



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M   G++     + + L+A  N   ++ G+++HA +IKT +     +   LI  Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC    DA+  F EM ERN VSW  +I++ SQ     EAL+LF +M +   +PN+ TF 
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 164 TVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VL +C+     E G     S+  +          + ++D++ +AG++  A+   E +P
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 328/577 (56%), Gaps = 14/577 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y TLL + VN R L  G+++HAH+I+        + T ++  Y KC  L  A+++FD+M 
Sbjct: 185 YTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMA 244

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +  V+WT ++  Y+Q   + +AL LF+ ++    E + F F+ VL +CA       GKQ
Sbjct: 245 VKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQ 304

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ + K   E  + VG+ L+D Y K      A   F+ + E + VS +AIISGY Q+  
Sbjct: 305 IHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQ 364

Query: 241 DEEAIELFRKLQVE-GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            EEA++ F+ L+ +  ++ N  TY S+  A S LA    G QVH+  ++  +      ++
Sbjct: 365 FEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES 424

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MYSKCG L  +  VF++M    +++W A + G++ +G   E + LF  M     +K
Sbjct: 425 ALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG-MK 483

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+SVT++AVL+ CSH G+ ++G      ++  K    P I+HY C++D+  R+G + EAL
Sbjct: 484 PNSVTFIAVLTACSHAGLVEQGKHYLDTMLR-KYNVAPTIDHYDCMIDIYARSGLLDEAL 542

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
            F+KNMPFEP A      L  C  H N+++G+  G+ L +++PE+   YV+  NLY  AG
Sbjct: 543 RFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAG 602

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE+   V +LM E+ + K+   SWI+    +H F   D+ HP  +E+  K+K+      
Sbjct: 603 KWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKEFD---- 658

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG--APIRVIKNLRICVDC 597
             G+   M   ++     ++ + LL HSE+LA+ FGLI       API+V KNLR C DC
Sbjct: 659 --GF---MEGDMFQCSMTERREQLLDHSERLAIAFGLISVNGNARAPIKVFKNLRACPDC 713

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H FAK VS V G ++ +RD  RFHH  EG CSC DYW
Sbjct: 714 HEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNAC 68
           SS+  + +Q  V +      +L +L  +G+L +A     EM   G+ +    Y  L  AC
Sbjct: 37  SSVKISHKQGQVENL-----HLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEAC 91

Query: 69  VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
              R+L  G+ +H  M      P V L+  ++  Y +C  L DA K+FDEM + N VS T
Sbjct: 92  RELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRT 151

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
            MISAY+++    +A+ LF RML S  +P    + T+L S       ++G+QIH+ +I++
Sbjct: 152 TMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRA 211

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
              S+  + + +++MY K G +  A+ VF+ +  +  V+ T ++ GY Q G   +A++LF
Sbjct: 212 GLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLF 271

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
             L  EG+  +   ++ VL A + L  L  GKQ+H+ V +  +   V +   L+D Y KC
Sbjct: 272 VDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKC 331

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
            S   + R F  + E   +SW+A++ GY +     E V+ F  +R +N V  +S TY ++
Sbjct: 332 SSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSI 391

Query: 369 LSGCS 373
              CS
Sbjct: 392 FQACS 396


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 343/607 (56%), Gaps = 43/607 (7%)

Query: 33  LKTLCSNGQLTKALIEMATL-GLEMRFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +++  +NG   + +    T+ G  +R + Y    +L AC    T+  G+++H    K   
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              +++   L+  Y KC  LS+AR + DEM  R+VVSW +++  Y+Q     +AL +   
Sbjct: 172 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M       +  T A++L + +                 +  E+ +YV     DM+ K G+
Sbjct: 232 MESVKISHDAGTMASLLPAVSN----------------TTTENVMYVK----DMFFKMGK 271

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                        + +VS   +I  Y +  +  EA+EL+ +++ +G   + V+  SVL A
Sbjct: 272 -------------KSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA 318

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
               +AL  GK++H ++ R ++   ++L+N+LIDMY+KCG L  +R VF+NM  R V+SW
Sbjct: 319 CGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSW 378

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            AM+  Y   G G + V LF+ +++   V PDS+ ++  L+ CSH G+ + G + F  + 
Sbjct: 379 TAMISAYGFSGRGCDAVALFSKLQDSGLV-PDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
           D      P +EH  C+VD+LGRAG+V EA  FI++M  EP   + G+LLGACRVH + DI
Sbjct: 438 D-HYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           G     +L ++ PE +G YV+LSN+YA AGRWE+VT +R +MK K + K+PG S +E+++
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
           I+HTF   DRSHP  +E+  ++  L  K KE GYVPD    L+DV+EE KE  L  HSEK
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 570 LALTFGLIGTPE-----GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
           LA+ F L+ T E        IR+ KNLRIC DCH  AK +S++  R++ +RD NRFH   
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 625 EGTCSCG 631
            G CSC 
Sbjct: 677 FGVCSCA 683



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 176/362 (48%), Gaps = 39/362 (10%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L+   + RTLR    VH+ +I    R    L  +L+  Y   + ++ ARK+FDE+ ERN
Sbjct: 48  VLDTYPDIRTLR---TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN 104

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V+    MI +Y       E + +F  M   +  P+ +TF  VL +C+ +    +G++IH 
Sbjct: 105 VIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHG 164

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
              K    S ++VG+ L+ MY K G + EAR V + +  RDVVS  +++ GYAQ    ++
Sbjct: 165 SATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDD 224

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E+ R+++   +  +  T AS+L A+S                                
Sbjct: 225 ALEVCREMESVKISHDAGTMASLLPAVSN------------------------------- 253

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
             +   ++ Y + +F  M +++++SWN M+  Y K+ M  E VEL++ M E +  +PD+V
Sbjct: 254 --TTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM-EADGFEPDAV 310

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           +  +VL  C        G  + H  ++ K    P +     ++DM  + G + +A +  +
Sbjct: 311 SITSVLPACGDTSALSLGKKI-HGYIERKK-LIPNLLLENALIDMYAKCGCLEKARDVFE 368

Query: 424 NM 425
           NM
Sbjct: 369 NM 370


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 343/567 (60%), Gaps = 15/567 (2%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            + VH  ++K      ++L + +I  Y K   L++A  +F  + + NV+ + AMI+ + +
Sbjct: 225 AEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCR 284

Query: 137 ------KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKS 188
                 K  S EAL+L+  M     +P+EFTF+++L +C  AG FGF  GKQIH  ++K 
Sbjct: 285 DEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGF--GKQIHGQVLKH 342

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
           +F    Y+GS+L+D+Y+ +G + +    F  LP++D+V+ T++ISG  Q  L E+A+ LF
Sbjct: 343 SFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLF 402

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           ++    G+  +  T +SV+ A + LA    G+Q+    +++    +  + NS I M ++ 
Sbjct: 403 QESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARS 462

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +    R F  M  R V+SW+A++  +++HG  R+ + +FN M    KV P+ VT+L V
Sbjct: 463 GDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNA-KVAPNEVTFLNV 521

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L+ CSHGG+ D GL  ++EI+  + G  P I+H  CVVD+LGRAGR+ +A  FI++  F 
Sbjct: 522 LTACSHGGLVDDGLR-YYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFH 580

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488
             A +  SLL +CR+H +++ G+ V  ++M++EP ++ +YVIL N+Y  AG     ++ R
Sbjct: 581 DDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTR 640

Query: 489 ELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
           +LMKE+ V K+PG SWIEL   +H+F A D+SHP    +  K+ ++  K ++     + S
Sbjct: 641 DLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNAS 700

Query: 549 CVLYDVDEEQKEKVLLG-HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
                +     E+ L+G HSEK+A+ FG+I  P+ APIRV+KNLR+C DCH+  K +S  
Sbjct: 701 TGSDGI--SSSEQNLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGS 758

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             R++ LRD  RFHH   G+CSCGDYW
Sbjct: 759 ENREIILRDGIRFHHFRGGSCSCGDYW 785



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 185/374 (49%), Gaps = 17/374 (4%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112
           GL +    Y   L AC     LR G+ VHA  +       V+L   L   Y  C  + +A
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEA 157

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172
           R++FD   E + VSW +++S Y +     E L +F  M       N F   +++  CA  
Sbjct: 158 RRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 173 --FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
              G  + + +H  ++K+  ++ +++ S+++DMYAK G +  A  +F+ +P+ +V+   A
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNA 277

Query: 231 IISGY----AQLG--LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           +I+G+    A +G  +  EA+ L+ ++Q  GM  +  T++S+L A +     G GKQ+H 
Sbjct: 278 MIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHG 337

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            VL+        + ++LID+YS  G +    R F ++ ++ +++W +M+ G  ++ +  +
Sbjct: 338 QVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEK 397

Query: 345 VVELFNLMREEN---KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
            + LF    +E+    +KPD  T  +V++ C+   +   G  +  + +  K GF      
Sbjct: 398 ALRLF----QESICYGLKPDLFTMSSVMNACASLAVARTGEQI--QCLAIKYGFNRFTAM 451

Query: 402 YGCVVDMLGRAGRV 415
               + M  R+G V
Sbjct: 452 GNSFIHMCARSGDV 465



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 182/362 (50%), Gaps = 22/362 (6%)

Query: 80  VHAHMIKTCYRPPVYLRTRLIVFYNKCECLS--DARKMFDEMRERNVVSWTAMISAYSQK 137
           VHAH+ +      ++LR  L+  Y +    +   A ++ DEM  RN VS+  +IS+YS+ 
Sbjct: 21  VHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRA 80

Query: 138 AHSFEALNLFIRM-----LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES 192
                AL  F R      LR D     FT+A  L +C+ A     GK +H++ +     +
Sbjct: 81  GLPGRALETFARARAAAGLRVD----RFTYAAALAACSRALDLRTGKAVHAMTVLDGLGN 136

Query: 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252
            +++ +SL  MYA  G + EAR VF+   E D VS  +++SGY + G  EE +++F  + 
Sbjct: 137 GVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMC 196

Query: 253 VEGMISNYVTYASVLTALSGLAALGH--GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
             G+  N     S++   +  + +G    + VH  V++  + + + L +++IDMY+K G+
Sbjct: 197 HHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGA 256

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSK------HGMGREVVELFNLMREENKVKPDSVT 364
           LT +  +F ++ +  VI +NAM+ G+ +        + RE + L++ M+    ++P   T
Sbjct: 257 LTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRG-MQPSEFT 315

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           + ++L  C+  G    G  +  +++  K  F  +      ++D+   +G + +     ++
Sbjct: 316 FSSILRACNLAGEFGFGKQIHGQVL--KHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRS 373

Query: 425 MP 426
           +P
Sbjct: 374 LP 375



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 145/301 (48%), Gaps = 14/301 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM + G++     + ++L AC        G+++H  ++K  +    Y+ + LI  Y+   
Sbjct: 303 EMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSG 362

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+ D  + F  + ++++V+WT+MIS   Q     +AL LF   +    +P+ FT ++V+ 
Sbjct: 363 CMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMN 422

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA       G+QI  L IK  F     +G+S + M A++G +      F+ +  RDVVS
Sbjct: 423 ACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVS 482

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            +A+IS +AQ G   +A+ +F ++    +  N VT+ +VLTA S      HG  V   + 
Sbjct: 483 WSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACS------HGGLVDDGLR 536

Query: 288 RFEI-------PSYVVLQNSLIDMYSKCGSLTYSRR-VFDNMSERTVISWNAMLVGYSKH 339
            +EI          +     ++D+  + G L  +   + D+      + W ++L     H
Sbjct: 537 YYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIH 596

Query: 340 G 340
           G
Sbjct: 597 G 597



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 4/154 (2%)

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK--CGSLTYSRRVFDNMSER 324
           L  L    AL H   VH+H+ R    + + L+NSL+  Y +   G+  ++ R+ D M  R
Sbjct: 6   LDLLRSCTALPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRR 65

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
             +S+N ++  YS+ G+    +E F   R    ++ D  TY A L+ CS       G AV
Sbjct: 66  NAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAV 125

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
               V   DG    +     +  M    G +GEA
Sbjct: 126 HAMTV--LDGLGNGVFLSNSLASMYASCGEMGEA 157


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 338/571 (59%), Gaps = 10/571 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           +N+C +    R    +HA + K+      ++  +L+  YNK     DA K+FD+M  +++
Sbjct: 49  VNSCPSISNCR---EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDL 105

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++IS +S+  H   +L  F  M      +PNE T  +++++C GA   + GK IH 
Sbjct: 106 VSWNSLISGFSRCLHM--SLTAFYTMKFEMSVKPNEVTILSMISACNGAL--DAGKYIHG 161

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             IK      + V +SL++MY K+G +  A  +FE +P+ + VS  +II+     G   E
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
            I+ F K++  G+  +  T  ++L A   L      + +H  +      + + +  +L+D
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
            Y+K G L+ S  VF  +     ++W AML GY+ HG+GRE ++LF  M  +  ++PD V
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG-LEPDHV 340

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+  +LS CSH G+ + G + F+ + +   G EP ++HY C+VD+LGR G + +A E I+
Sbjct: 341 TFTHLLSACSHSGLVNEGKSYFNVMSEVY-GIEPRVDHYSCMVDLLGRCGLLNDAYEVIQ 399

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           NMP EP A + G+LLGACRVH N+++G+ V + L+ +EP +  NY++LSN+Y+++  W+D
Sbjct: 400 NMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKD 459

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
             +VR L+KE+ + + PG S IE     H F   DRSHP  E++ +K+++L  K ++AGY
Sbjct: 460 AAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGY 519

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
                 VL DV+EE KE ++  HSEKLA+ FGL+ + EG  + + KNLRIC DCH+ AK 
Sbjct: 520 SSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKL 579

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +S +  R + +RD  RFHH  +G CSC DYW
Sbjct: 580 ISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 42/281 (14%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+E        LL AC++    +  + +H  M  T +   + + T L+  Y K  
Sbjct: 228 KMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG 287

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            LS +  +F E+   + V+WTAM++ Y+      EA+ LF  M     EP+  TF  +L+
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C+           HS ++          G S  ++ ++         V+   P  D  S
Sbjct: 348 ACS-----------HSGLVNE--------GKSYFNVMSE---------VYGIEPRVDHYS 379

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
           C   + G  + GL  +A E+ + + +E    N   + ++L A      +  GK+V  H++
Sbjct: 380 CMVDLLG--RCGLLNDAYEVIQNMPME---PNAGVWGALLGACRVHGNIELGKEVAEHLI 434

Query: 288 RFEIP----SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
             E P    +Y++L N    MYS   S   + +V   + ER
Sbjct: 435 NME-PLDPRNYIMLSN----MYSASRSWKDAAKVRALLKER 470



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
           +++L A++   ++ + +++H+ V +  +     + + L+  Y+K G    + ++FD+M  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           + ++SWN+++ G+S+       +  F  M+ E  VKP+ VT L+++S C+  G  D G  
Sbjct: 103 KDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKY 158

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           +       K G   E++    +++M G++G +  A    + +P +P      S++ A
Sbjct: 159 IHG--FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 331/570 (58%), Gaps = 3/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     LRGG+ V        Y+  V++ + L+  Y +   + DA K+FD M  R+ 
Sbjct: 115 LSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDR 174

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+W+ M++ +       +A+ ++ RM     + +E     V+ +C  A    +G  +H  
Sbjct: 175 VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGH 234

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           +++      +   +SL+DMYAK G +  A  VF  +  R+ VS +A+ISG+AQ G  +EA
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR +Q  G+  +     S L A S +  L  G+ VH  ++R       +L  + IDM
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDM 353

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCGSL  ++ +F+ +S+R +I WNAM+     HG G++ + LF  M  E  ++PD  T
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEM-NETGMRPDHAT 412

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           + ++LS  SH G+ + G   F  +V+      P  +HY C+VD+L R+G V EA + + +
Sbjct: 413 FASLLSALSHSGLVEEGKLWFGCMVN-HFKITPAEKHYVCLVDLLARSGLVEEASDLLTS 471

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M  EPT AI  +LL  C  +  +++GE +   ++E++P++ G   ++SNLYA+  +W+ V
Sbjct: 472 MKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKV 531

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            +VR+LMK+    K PG S IE+    H F   D+SHP REE+ +KV +L ++ ++ GY+
Sbjct: 532 RQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYI 591

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P    V +D++EE KE+ L  HSEKLA+ FGL+ T  G  + +IKNLR+C DCH+  K++
Sbjct: 592 PRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYI 651

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SK+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 652 SKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 175/351 (49%), Gaps = 18/351 (5%)

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +S++     AL +F R L     P+  TF   L++CA       G+ +      + ++  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V SSLL +YA+ G + +A  VF+ +P RD V+ + +++G+   G   +AI+++R+++ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G+  + V    V+ A +    +  G  VH H+LR  +   VV   SL+DMY+K G L  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF  M  R  +SW+AM+ G++++G   E + LF  M + + ++PDS   ++ L  CS
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACS 321

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV-----VDMLGRAGRVGEALEFIKNMPFE 428
           + G    G +V   IV   D        + C+     +DM  + G +  A + + NM  +
Sbjct: 322 NIGFLKLGRSVHGFIVRRFD--------FNCILGTAAIDMYSKCGSLASA-QMLFNMISD 372

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLYAS 477
               +  +++  C  H        + Q + E  + P++A    +LS L  S
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 165/312 (52%), Gaps = 12/312 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC   R +R G  VH H+++   R  V   T L+  Y K   L  A ++F  M  RN
Sbjct: 215 VIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRN 274

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW+AMIS ++Q   S EAL LF  M  S  +P+     + L +C+     +LG+ +H 
Sbjct: 275 DVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG 334

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++  F+ +  +G++ +DMY+K G +  A+ +F  + +RD++   A+I+     G  ++
Sbjct: 335 FIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQD 393

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QVHSHVLRFEIPSYVVLQNSLI 302
           A+ LF+++   GM  ++ T+AS+L+ALS    +  GK      V  F+I         L+
Sbjct: 394 ALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLV 453

Query: 303 DMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVG---YSKHGMGREVVELFNLMREENKV 358
           D+ ++ G +  +  +  +M +E TV  W A+L G     K  +G  + +  N++    ++
Sbjct: 454 DLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD--NIL----EL 507

Query: 359 KPDSVTYLAVLS 370
           +PD V  LA++S
Sbjct: 508 QPDDVGVLALVS 519


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/663 (33%), Positives = 369/663 (55%), Gaps = 46/663 (6%)

Query: 15  TFTQQQLTVPSFPPNPQN--LKTLCSNGQLTKALI---EMATLGLEMRFEEYDTLLNACV 69
           +F+  +L  PS      N  ++ L  NG  ++AL    E   + L+     + +++NAC 
Sbjct: 67  SFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 126

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
                   + +H  ++   +   +Y+   LI  Y +   L  ARK+F+EM  R+VVSW +
Sbjct: 127 GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 186

Query: 130 MISAYSQKAHSFEALNLFIRMLR------SDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +IS Y+   +  EAL ++ + ++      +  +P+  T  ++L +C      E GK +H 
Sbjct: 187 LISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHD 246

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +I S +E      + L++MYAK G +  ++ VF  +  +D VS  ++I+ Y Q G   +
Sbjct: 247 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGD 306

Query: 244 AIELFR-------------------------------KLQVEGMISNYVTYASVLTALSG 272
           ++++F                                +++ EG+  +  T  S+L   S 
Sbjct: 307 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 366

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LAA   GK++H  + +  + S V + N LI+MYSKCGSL  S +VF  M  + V++W A+
Sbjct: 367 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTAL 426

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +     +G G++ V  F  M E   + PD V ++A++  CSH G+ + GL  FH +   K
Sbjct: 427 ISACGMYGEGKKAVRAFGEM-EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMK--K 483

Query: 393 D-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           D   EP IEHY CVVD+L R+  + +A +FI +MP +P ++I G+LL ACR+  + +I E
Sbjct: 484 DYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAE 543

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            V +R++E+ P++ G YV++SN+YA+ G+W+ V  +R+ +K + + KDPG SW+E+   +
Sbjct: 544 RVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 603

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           + F    +     EE++  +  L+    + GY+ ++  VL+D+DE++K  +L GHSE+LA
Sbjct: 604 YVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLA 663

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+ T  G P++V+KNLR+C DCH   K++SK+  R++ +RD NRFH   +G CSCG
Sbjct: 664 IAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCG 723

Query: 632 DYW 634
           DYW
Sbjct: 724 DYW 726



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 197/427 (46%), Gaps = 52/427 (12%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++  A  +  T     ++H+ +I       V    +LI  Y       D    F   R
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH---FRDPTSSFSVFR 72

Query: 121 ----ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
                 NV  W ++I A +      EAL+L+    R   +P+ +TF +V+ +CAG   FE
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           + K IH  ++   F S +Y+G++L+DMY +   + +AR VFE +P RDVVS  ++ISGY 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 237 QLGLDEEAIELFR---KLQVEGMISNY----VTYASVLTALSGLAALGHGKQVHSHVLRF 289
             G   EA+E++    KL +E M++ +    +T  S+L A   L  L  GK VH +++  
Sbjct: 193 ANGYWNEALEIYYQSIKLFME-MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                    N LI+MY+KCG+L  S+ VF  M  +  +SWN+M+  Y ++G   + +++F
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311

Query: 350 NLMREEN------------------------------KVKPDSVTYLAVLSGCSHGGMED 379
             M+  +                               V PD  T L++L  CS    + 
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371

Query: 380 RGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
           +G     EI  C  K G E ++     +++M  + G +  + +  K M  +       +L
Sbjct: 372 QG----KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVT-WTAL 426

Query: 438 LGACRVH 444
           + AC ++
Sbjct: 427 ISACGMY 433



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 28/352 (7%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL- 220
           F+++  + A A       ++HSLII       +   + L+  YA       +  VF    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
           P  +V    +II      GL  EA+ L+ + Q   +  +  T+ SV+ A +GL      K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
            +H  VL     S + + N+LIDMY +   L  +R+VF+ M  R V+SWN+++ GY+ +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 341 MGREVVELFN-----LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
              E +E++       M   N+ KPD +T  ++L  C H G  + G  V   ++    G+
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI--TSGY 253

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV-- 453
           E +      +++M  + G +  + E    M  + +            V +N  I  ++  
Sbjct: 254 ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS------------VSWNSMINVYIQN 301

Query: 454 ---GQRLMEIEPENAGNYVILSNLYASAGRWEDVT---RVRELMKEKAVTKD 499
              G  L   E   A + +  + + AS    ED     R+   M+ + VT D
Sbjct: 302 GKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 353


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 338/572 (59%), Gaps = 15/572 (2%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTR----LIVF--YNKCECLSDARKMFDEMRERNVVS 126
           +L    ++HA ++K+   P    +TR    L  F   +    L+ A  + + +  +N   
Sbjct: 5   SLSQAMQLHAQILKS---PDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELGKQIHSL 184
              MI AYSQ     +AL+LF+ ML   T P  ++FT+  +L SCA      +GKQ+H L
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGL 121

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           I KS  ES  YV + L+ MY+  G+   A  VF  + +RDVVS T++I G+       EA
Sbjct: 122 IYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEA 181

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           I LF ++  +G+  N  T  SVL A +   A+G G++V   +   +I     ++ +LIDM
Sbjct: 182 IRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDM 241

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y+KCGS+  +R+VFD +  + V +W AM+ G + HG+  E V LF+ M E   ++PD  T
Sbjct: 242 YAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQM-ESFGLRPDERT 300

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
             AVLS C + G    G A F+ +  CK G +P I+HYGC+VD+L R G + EA EFI+ 
Sbjct: 301 MTAVLSACRNAGWFSEGFAYFNSMW-CKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRK 359

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGE--FVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           MP EP   +  +L+ A +VH ++D  E     + L++++ ++ G+YV+L N+YASAG+W 
Sbjct: 360 MPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWH 419

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           D  ++RELM +K ++K PG S IE+D ++H F A D  H   E++ AK+ ++  + K  G
Sbjct: 420 DKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEG 479

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
           Y P +S VL ++D ++K   L  HSEKLA+ FGLI T  G  IR++KNLR C DCH+  K
Sbjct: 480 YHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLK 539

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +SK+Y + + +RD+ RFHH + G CSC DYW
Sbjct: 540 LISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 5/304 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL +C   +  R G+++H  + K+      Y+   LI  Y+ C     A K+F +MR
Sbjct: 99  YPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMR 158

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +R+VVSWT+MI  +     + EA+ LF  M+    EPNE T  +VL +CA A    +G++
Sbjct: 159 DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRR 218

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +  +I +        V ++L+DMYAK G I  AR VF+ +  +DV + TA+ISG A  GL
Sbjct: 219 VQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGL 278

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSYVVLQN 299
            EEA+ LF +++  G+  +  T  +VL+A         G    +S   ++ I   +    
Sbjct: 279 CEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYG 338

Query: 300 SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            ++D+ ++ G L  +      M  E  V+ W  ++     HG   ++     LM++   +
Sbjct: 339 CMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHG---DIDRSEQLMKDRGLL 395

Query: 359 KPDS 362
           K DS
Sbjct: 396 KMDS 399



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY---SKCGSLTYSRRVFDNMSERTVISW 329
           + +L    Q+H+ +L+   P       + +  +   S  G LTY+  + +++S +     
Sbjct: 3   ITSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFH 62

Query: 330 NAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           N M+  YS+     + + LF +++ +    +PD  TY  +L  C+       G  +   I
Sbjct: 63  NTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLI 122

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
              K G E +      ++ M    G+ G A +    M
Sbjct: 123 Y--KSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKM 157


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 334/603 (55%), Gaps = 41/603 (6%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           NG+L KA+    +M   G+      Y +LL +C+    L  G+++H+H+I+      + +
Sbjct: 166 NGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITV 225

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T +   Y +C  L  A+ +FD M  +N V+WT ++  Y+Q      AL LF RM     
Sbjct: 226 ETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGV 285

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           E +EF F+ VL  C     +++GKQIHS I+K   ES + VG+ L+D Y K G I  A  
Sbjct: 286 ELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYR 345

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
            F  + E + VS +A+ISG++Q G  E+ I++F  L+ EG++ N   Y SV  A +  A 
Sbjct: 346 SFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQAN 405

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G Q H   ++  + SY+  +++++ MYSKCG L Y+RR F+++ E   ++W A++ G
Sbjct: 406 LNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISG 465

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-G 394
           Y+ HG   E +  F  M+    V+P++VT++AVL+ CSH G+          +   +D G
Sbjct: 466 YAYHGNAAEALGFFRRMQSYG-VRPNAVTFIAVLTACSHSGLVAEAKQYLGSM--SRDYG 522

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454
            +P I+HY C++D   RAG + EALE I  MPFEP A    SLLG C  H ++ +G+   
Sbjct: 523 VKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAA 582

Query: 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTF 514
           + L  ++P +   Y++L NLY++ G+WE+   VR+LM E+ + K+   SWI +   +H  
Sbjct: 583 ENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVH-- 640

Query: 515 HASDRSHPMR---EELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
                  P+R   EE                   D+SC L       +++ LL HSEKLA
Sbjct: 641 ------RPVRLLNEE------------------DDVSCSL-----PARKEQLLDHSEKLA 671

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGLI T + API V KNLR C DCH F K VS V GR++ +RD  RFHH   G CSC 
Sbjct: 672 IAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCN 731

Query: 632 DYW 634
           DYW
Sbjct: 732 DYW 734


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/605 (36%), Positives = 346/605 (57%), Gaps = 10/605 (1%)

Query: 35  TLCSNGQLTKALIEMATLGLEMRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
            LC +  L+     + +  L  +F E  + +LL  C   +++   ++VHAH++K      
Sbjct: 6   VLCQSHLLSLPNSPLQSSELNAKFNEQGWLSLLKRC---KSMEEFKKVHAHILKLGLFYD 62

Query: 93  VYLRTRLIV--FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
            +  + L+     ++   +  A  +F ++ E     +  MI          EAL L++ M
Sbjct: 63  SFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEM 122

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
           L    EP+ FT+  VL +C+     + G QIH+ +  +  E  ++V + L+ MY K G I
Sbjct: 123 LERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAI 182

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTA 269
             A  VFE + E+ V S ++II  +A + +  E + L   +  EG   +      S L+A
Sbjct: 183 EHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSA 242

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + L +   G+ +H  +LR      VV++ SLIDMY KCGSL     VF NM+ +   S+
Sbjct: 243 CTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSY 302

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
             M+ G + HG GRE + +F+ M EE  + PD V Y+ VLS CSH G+   G   F+ + 
Sbjct: 303 TVMIAGLAIHGRGREALRVFSDMLEEG-LTPDDVVYVGVLSACSHAGLVKEGFQCFNRM- 360

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449
             +   +P I+HYGC+VD++GRAG + EA + IK+MP +P   +  SLL AC+VH+N++I
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420

Query: 450 GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQ 509
           GE     + ++   N G+Y++L+N+YA A +W +V R+R  M EK + + PG S +E ++
Sbjct: 421 GEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANR 480

Query: 510 ILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEK 569
            ++ F + D+S P  E +   ++Q+  + K  GY PDMS VL DVDE++K + L  HS+K
Sbjct: 481 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540

Query: 570 LALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
           LA+ F LI T EG+P+R+ +NLR+C DCH + KF+S +Y R++++RD NRFHH  +GTCS
Sbjct: 541 LAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCS 600

Query: 630 CGDYW 634
           C DYW
Sbjct: 601 CKDYW 605


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 344/591 (58%), Gaps = 15/591 (2%)

Query: 45  ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYN 104
           A  EM T G+      Y  +LNAC +   L  G+++H+ ++       V +   L+  Y 
Sbjct: 304 AFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYM 363

Query: 105 KC-ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           KC   + DA + F  +   NV+SWT++I+ +S+     E++ +F  M      PN FT +
Sbjct: 364 KCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLS 423

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           T+L +C         +++H  IIK+N ++ + VG++L+D YA  G + +A  V   +  R
Sbjct: 424 TILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHR 483

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           DV++ T++ +   Q G  E A+ +   +  + +  +  + AS L+A +G+  +  GKQ+H
Sbjct: 484 DVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLH 543

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
            + ++  + S++ + N L+D+Y KCG +  + R F  ++E   +SWN ++ G + +G   
Sbjct: 544 CYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVS 603

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
             +  F  MR    V+PD +T L VL  CSHGG+ D GL  F  + + K G  P+++HY 
Sbjct: 604 SALSAFEDMRLAG-VEPDQITCLLVLYACSHGGLVDMGLDYFQSMRE-KHGIRPQLDHYV 661

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           C+VD+LGRAGR+ EA+  I+ MPF+P A I  +LLGAC++H N+ +GE + ++ +E++P 
Sbjct: 662 CLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPS 721

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           +   YV+L+NLY  +GR E   + R +M+E+ V K+PG+SW+E   ++H F A D SHP 
Sbjct: 722 DPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQ 781

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
             ++  K++ L  +F+  G       + Y     Q+ + L  HSEKLA+ FGLI TP  A
Sbjct: 782 IGKIHEKIESLIAQFRNQG-------IWY-----QENRALAHHSEKLAVAFGLISTPPKA 829

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           PIR+IKN+RIC DCH+F   V+++  R++ +RD NRFH   +G CSC  YW
Sbjct: 830 PIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 236/467 (50%), Gaps = 48/467 (10%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           N R++R G  +H+ +IK  ++  ++L   L+  Y KC  +++AR++FDEM  R+V SWT 
Sbjct: 27  NSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTM 86

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           ++SAY +  +  EAL LF  ML S   PNEFT +T L SC+    F  G +  +L+ KS 
Sbjct: 87  LMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG 146

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F+S+  +GS+L+D Y+K G   EA  VFE +   D+VS T ++S + + G   +A++L+ 
Sbjct: 147 FDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYH 206

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G+  N  T+  +L A S    L +GK VH+H++ + I   +VL+ +L+DMY KC 
Sbjct: 207 RMIQTGVAPNEFTFVKLLAA-SSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQ 265

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           S+  + +V     E  V  W A++ G+++    RE +  F+ M E + V P++ TY  +L
Sbjct: 266 SIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEM-ETSGVVPNNFTYSGIL 324

Query: 370 SGCSH----------------GGMEDRGLAVFHEIVD----CKDGFE-----------PE 398
           + CS                  G+E+  ++V + +VD    C +  E           P 
Sbjct: 325 NACSSILALDLGKQIHSRVVMAGLEND-VSVGNSLVDMYMKCSNMIEDAVRAFRGIASPN 383

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           +  +  ++      G   E+++    M      P +  L ++LGAC       I      
Sbjct: 384 VISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGT-----IKSLTQT 438

Query: 456 RLME--IEPENAGNYVILSN----LYASAGRWEDVTRVRELMKEKAV 496
           R +   I   NA N V++ N     YA  G  +D   V  +MK + V
Sbjct: 439 RKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDV 485



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 176/311 (56%), Gaps = 3/311 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           T L +C   R    G R  A + K+ +     L + LI FY+KC C  +A ++F+ M   
Sbjct: 121 TALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNG 180

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSWT M+S++ +     +AL L+ RM+++   PNEFTF  +L + +   G   GK +H
Sbjct: 181 DIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAA-SSFLGLNYGKLVH 239

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++    E ++ + ++L+DMY K   I +A  V +   E DV   TAIISG+ Q     
Sbjct: 240 AHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFR 299

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EAI  F +++  G++ N  TY+ +L A S + AL  GKQ+HS V+   + + V + NSL+
Sbjct: 300 EAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLV 359

Query: 303 DMYSKCGSLTY-SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           DMY KC ++   + R F  ++   VISW +++ G+S+HG+  E +++F  M+    V+P+
Sbjct: 360 DMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVG-VRPN 418

Query: 362 SVTYLAVLSGC 372
           S T   +L  C
Sbjct: 419 SFTLSTILGAC 429


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 330/577 (57%), Gaps = 14/577 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y TLL + VN R L  G+++HAH+I+        + T ++  Y KC  L  A+++FD+M 
Sbjct: 187 YTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMA 246

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            +  V+ T ++  Y+Q   + +AL LF+ ++    E + F F+ VL +CA      LGKQ
Sbjct: 247 VKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQ 306

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ + K   ES + VG+ L+D Y K      A   F+ + E + VS +AIISGY Q+  
Sbjct: 307 IHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQ 366

Query: 241 DEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            EEA++ F+ L+ +   I N  TY S+  A S LA    G QVH+  ++  +      ++
Sbjct: 367 FEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES 426

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +LI MYSKCG L  +  VF++M    +++W A + G++ +G   E + LF  M     +K
Sbjct: 427 ALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG-MK 485

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+SVT++AVL+ CSH G+ ++G      ++  K    P I+HY C++D+  R+G + EAL
Sbjct: 486 PNSVTFIAVLTACSHAGLVEQGKHCLDTMLR-KYNVAPTIDHYDCMIDIYARSGLLDEAL 544

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           +F+KNMPFEP A      L  C  H N+++GE  G+ L +++PE+   YV+  NLY  AG
Sbjct: 545 KFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAG 604

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE+   + +LM E+ + K+   SWI+    +H F   D+ HP  +E+  K+K+      
Sbjct: 605 KWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFD---- 660

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT--PEGAPIRVIKNLRICVDC 597
             G+   M   ++  +  ++ + LL HSE+LA+ FGLI       API+V KNLR C DC
Sbjct: 661 --GF---MEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDC 715

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H FAK VS V G ++ +RD  RFHH  EG CSC DYW
Sbjct: 716 HEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 182/345 (52%), Gaps = 3/345 (0%)

Query: 32  NLKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           +L +L  + +L +A   L EM   G+ +    Y  L  AC   R+L  G+ +H  M    
Sbjct: 54  HLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGI 113

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
             P V L+  ++  Y +C  L DA K+FDEM E N VS T MISAY+++    +A+ LF 
Sbjct: 114 ENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFS 173

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            ML S  +P    + T+L S       + G+QIH+ +I++   S+  + + +++MY K G
Sbjct: 174 GMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCG 233

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  A+ VF+ +  +  V+CT ++ GY Q G   +A++LF  L  EG+  +   ++ VL 
Sbjct: 234 WLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLK 293

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L  L  GKQ+H+ V +  + S V +   L+D Y KC S   + R F  + E   +S
Sbjct: 294 ACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVS 353

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           W+A++ GY +     E V+ F  +R +N    +S TY ++   CS
Sbjct: 354 WSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACS 398


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 345/598 (57%), Gaps = 37/598 (6%)

Query: 64  LLNACVNQRTLRGGQRVHAH-MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL        L+ G+ +  H +I       ++++   I  ++ C  ++ ARK+FD     
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEPNEFTFATVLTSCAGAFGFELGKQ 180
            VV+W  ++S Y++     E+  LFI M +      PN  T   +L++C+       GK 
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 181 IHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFE--------------------C 219
           I++  IK    E ++ + ++L+DM+A  G +  ARGVF+                    C
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 220 -----------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                      +PERD VS TA+I GY ++   +E + LFR +Q+  +  +  T  S+LT
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L AL  G+   +++ + +I +   + N+LIDMY KCG++  ++++F+ M ++   +
Sbjct: 381 ACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT 440

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W AM+VG + +G G E + +F+ M E + V PD +TY+ V+  C+H G+  +G   F  +
Sbjct: 441 WTAMIVGLANNGHGEEALTMFSYMLEAS-VTPDEITYIGVMCACTHVGLVAKGKHFFSNM 499

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
              + G +P + HYGC+VD+LGRAG + EALE I NMP +P + + GSLLGACRVH NV 
Sbjct: 500 A-VQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQ 558

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + E     ++E+EPEN   YV+L N+YA+  +W+++  VR++M E+ + K PG S +E++
Sbjct: 559 LAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMN 618

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
            I++ F A D+SHP  +E+ AK++ +      AGY PD S V  DV EE KE  L  HSE
Sbjct: 619 GIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSE 678

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEG 626
           KLA+ + LI + +G  IR++KNLR+CVDCH+ A  VSKVY R++ +RDK RFHH   G
Sbjct: 679 KLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 199/415 (47%), Gaps = 49/415 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMR 120
           +LL  C    T+    ++H+  IKT         T++I+F    E   +  ARK+FDE+ 
Sbjct: 40  SLLETC---NTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIP 96

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK- 179
           + +V  W  MI  YS+   S   ++L+  ML  + +P+ FTF  +L         + GK 
Sbjct: 97  QPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKV 156

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            ++  +I    +S+++V    + +++  G ++ AR +F+     +VV+   ++SGY +  
Sbjct: 157 LLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFK 216

Query: 240 LDEEAIELFRKLQ--VEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI--PSYV 295
             EE+  LF +++   E +  N VT   +L+A S L  L  GK +++  ++  I  P+ +
Sbjct: 217 RYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN-L 275

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI---------------------------- 327
           +L+N+LIDM++ CG +  +R VFD M  R VI                            
Sbjct: 276 ILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPER 335

Query: 328 ---SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
              SW AM+ GY +    +EV+ LF  M+  N VKPD  T +++L+ C+H G  + G   
Sbjct: 336 DYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSN-VKPDEFTMVSILTACAHLGALELGEWA 394

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILG 435
               +D K+  + +      ++DM  + G V +A +    M     F  TA I+G
Sbjct: 395 -KTYID-KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVG 447



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 156/311 (50%), Gaps = 15/311 (4%)

Query: 143 ALNLFIRMLRSDTEPNEFTFA--TVLTSCAGAFGFELGKQIHSLIIKSNFES-HIYVGSS 199
           +L+LF++ + S+T  + F  +  ++L +C   +      QIHS  IK+   S H+++   
Sbjct: 17  SLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKV 73

Query: 200 LLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258
           ++    K +G ++ AR VF+ +P+  V     +I GY+++   E  + L++ + V  +  
Sbjct: 74  IIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKP 133

Query: 259 NYVTYASVLTALSGLAALGHGKQVHSH-VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           +  T+  +L   +   AL +GK + +H V+   + S + +Q   I ++S CG + Y+R++
Sbjct: 134 DGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKI 193

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCSHGG 376
           FD      V++WN +L GY++     E   LF  M ++ + V P+SVT + +LS CS   
Sbjct: 194 FDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK 253

Query: 377 MEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEA---LEFIKNMPFEPTAA 432
               G  ++++ +  K+G  EP +     ++DM    G +  A    + +K        +
Sbjct: 254 DLVGGKCIYNKYI--KEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTS 311

Query: 433 ILGSLLGACRV 443
           I+      CR+
Sbjct: 312 IVTGFANTCRI 322



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 10/200 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC +   L  G+    ++ K   +   ++   LI  Y KC  +  A+K+F+EM+++
Sbjct: 377 SILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKK 436

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +  +WTAMI   +   H  EAL +F  ML +   P+E T+  V+ +C        GK   
Sbjct: 437 DKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFF 496

Query: 183 S-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           S + ++   + ++     ++D+  +AG + EA  V   +P    V   +I+ G + LG  
Sbjct: 497 SNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMP----VKPNSIVWG-SLLG-- 549

Query: 242 EEAIELFRKLQVEGMISNYV 261
             A  + + +Q+  M +N +
Sbjct: 550 --ACRVHKNVQLAEMAANEI 567


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/602 (37%), Positives = 344/602 (57%), Gaps = 40/602 (6%)

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI---VFYNKCECLSDARKMFDEMRERNV 124
           C  Q  L+   ++HA M+KT      Y  T+ +   +     + L  A+ +FD     + 
Sbjct: 53  CSKQEELK---QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDT 109

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
             W  MI  +S       +L L+ RML      N +TF ++L +C+     E   QIH+ 
Sbjct: 110 FLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQ 169

Query: 185 IIKSNFESHIYVGSSLLDMYA-------------------------------KAGRIHEA 213
           I K  +E+ +Y  +SL++ YA                               KAG++  A
Sbjct: 170 ITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
             +F  + E++ +S T +ISGY Q G+ +EA++LF ++Q   +  + V+ A+ L+A + L
Sbjct: 230 LTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQL 289

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            AL  GK +HS++ +  I    VL   LIDMY+KCG +  +  VF N+  ++V +W A++
Sbjct: 290 GALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALI 349

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY+ HG GRE +  F  M++   +KP+ +T+  VL+ CS+ G+ + G  +F+ + +   
Sbjct: 350 SGYAYHGHGREAISKFMEMQKMG-IKPNVITFTTVLTACSYTGLVEEGKLIFYNM-ERDY 407

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
             +P IEHYGCVVD+L RAG + EA  FI+ MP +P A I G+LL ACR+H N+++GE +
Sbjct: 408 NLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEI 467

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
           G+ L+ I+P + G YV  +N++A   +W+     R LMKE+ V K PG S I L+   H 
Sbjct: 468 GEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHE 527

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPD-MSCVLYDVDEEQKEKVLLGHSEKLAL 572
           F A DRSHP  E++ +K K +  K +E GYVP+    +L  VD++++E ++  HSEKLA+
Sbjct: 528 FLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAI 587

Query: 573 TFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           T+GLI T  G  IR++KNLR+C DCH   K +SK+Y R + +RD+ RFHH  +G CSCGD
Sbjct: 588 TYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGD 647

Query: 633 YW 634
           YW
Sbjct: 648 YW 649



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 19  QQLTVPSFPPNPQNLKTL---CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLR 75
           Q++   S P N     +L   CSN    +   ++     ++ +E     +N+ +N     
Sbjct: 133 QRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAAT 192

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G  ++   +     +P       +I  Y K   +  A  +F +M E+N +SWT MIS Y 
Sbjct: 193 GNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYV 252

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     EAL LF  M  SD EP+  + A  L++CA     E GK IHS + K+       
Sbjct: 253 QAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSV 312

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           +G  L+DMYAK G + EA  VF+ +  + V + TA+ISGYA  G   EAI  F ++Q  G
Sbjct: 313 LGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMG 372

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYS 314
           +  N +T+ +VLTA S    +  GK +  ++ R + +   +     ++D+ S+ G L  +
Sbjct: 373 IKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEA 432

Query: 315 RRVFDNMSER-TVISWNAMLVGYSKHG---MGREVVELF 349
           +R    M  +   + W A+L     H    +G E+ E+ 
Sbjct: 433 KRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 471


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 341/604 (56%), Gaps = 36/604 (5%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L  C  +++      +H+ +IK  +     L   L+  Y KC  +  A ++FDEM  R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++++A+++       L++   M   D  +P+ F FA ++ +C+      LGKQ+H+
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             + S F     V SSL+DMY K G+  +AR VF+ +  ++ VS T++ISGYA+ G   E
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 244 AIELFRKLQVEGMIS--------------------------------NYVTYASVLTALS 271
           A++LF +  V  + S                                + +  +SV+   +
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            LA L  GKQ+H  V+     S + + N+L+DMY+KC  +  ++ +F  M  + VISW +
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++VG ++HG   E + L++ M   +++KP+ VT++ +L  CSH G+  RG  +F  +   
Sbjct: 310 IIVGTAQHGKAEEALTLYDEM-VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT-T 367

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
                P ++HY C++D+L R+G + EA   +  +PF+P      SLL AC  H N+++G 
Sbjct: 368 DYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGV 427

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
            +  R+++++PE+   Y++LSN+YA A  W  V++VR+LM    V K+PG S I+  +  
Sbjct: 428 RIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDS 487

Query: 512 HTFHASDR-SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL 570
             FHA +   HPM+ E+   +K L  + ++ GYVP+ S VLYD+++++KEK L  HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ +GL+    G  IR++KNLRIC DCHN  KF+S +  R++ +RD  R+HH  EG CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 631 GDYW 634
            D+W
Sbjct: 608 NDFW 611



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 34/297 (11%)

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           F   L  CA         ++HS IIK+ F+    + ++LLD+Y K G I +A  +F+ +P
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAALGHGK 280
            RD VS  +I++ + +  +    + +   +   +G+  ++  +A ++ A S L  L  GK
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           QVH+  +        V+++SLIDMY+KCG    +R VFD++  +  +SW +M+ GY++ G
Sbjct: 126 QVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSG 185

Query: 341 MGREVVE-------------------------------LFNLMREENKVKPDSVTYLAVL 369
              E ++                               LFN MR E     D +   +V+
Sbjct: 186 RKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVV 245

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            GC++  + + G  +   ++    GFE  +     +VDM  +   +  A +    MP
Sbjct: 246 GGCANLALLELGKQIHGLVIAL--GFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 55  EMRFEEYD--------TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           EMR E  D        +++  C N   L  G+++H  +I   +   +++   L+  Y KC
Sbjct: 227 EMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKC 286

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             +  A+ +F  M  ++V+SWT++I   +Q   + EAL L+  M+ S  +PNE TF  +L
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346

Query: 167 TSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +C+ A     G+++  S+    +    +   + LLD+ +++G + EA  + + +P
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIP 402


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 319/558 (57%), Gaps = 18/558 (3%)

Query: 83  HMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHS 140
           H+     RP       L+  +     +  AR +F  M    RNV SW  M+S  S+    
Sbjct: 72  HLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAV 131

Query: 141 FEALNLFIRM-LRSDTEPNEFT--FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVG 197
            EA  +F+ M  R+    N     FA     CA    FE      + ++           
Sbjct: 132 GEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVL----------W 181

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++++  Y  +G + +A   FE +P R +VS  A+++GY +    E+A+ +F+ +  +  +
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADV 241

Query: 258 -SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
             N  T +SVL   S L+ALG G+QVH    +  +   V    SL+ MY KCG L  + +
Sbjct: 242 RPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACK 301

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           +F  M  R VI+WNAM+ GY+ HG GRE +ELF  M+ +  V+P+ +T++AVL+ C H G
Sbjct: 302 LFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQG-VEPNWITFVAVLTACIHTG 360

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           M D G+  F  + +   G E  ++HY C+VD+L RAG +  A+  I++MPF+P  +  G+
Sbjct: 361 MCDFGMQCFERMQEVY-GIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGT 419

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           LL A RV+ N++  EF   +L+E  P+NAG YV L+N+YA A +W DV+RVR  MK+ AV
Sbjct: 420 LLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAV 479

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K PG SW+E++ ++H F ++DR HP    +  ++ QL  + K  GYVPD+   L+DVDE
Sbjct: 480 VKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDE 539

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
             K ++L+ HSEKLA+ FGL+ T  G  +R+ KNLR+C DCH  AK +SK+  R++ LRD
Sbjct: 540 SLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRD 599

Query: 617 KNRFHHIVEGTCSCGDYW 634
             RFHH   G CSCGDYW
Sbjct: 600 TTRFHHFRSGHCSCGDYW 617



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 1/160 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L  C N   L  G++VH    K      V   T L+  Y KC  L  A K+F EMR R
Sbjct: 250 SVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIR 309

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V++W AMIS Y+      EA+ LF +M     EPN  TF  VLT+C      + G Q  
Sbjct: 310 DVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCF 369

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             + +    E+ +   S ++D+  +AG +  A  +   +P
Sbjct: 370 ERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMP 409


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 344/573 (60%), Gaps = 2/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +LNAC   R L  G+ +H  M +  +   V     LI  Y KC  L +A ++F  M+ R
Sbjct: 308 AVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR 367

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V+SW  +I+A+ Q +   EAL+L   M     + ++ +F   L  CA +     G+ IH
Sbjct: 368 DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIH 427

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA-QLGLD 241
           S I++S  ++ + + +++LDMY       +A  VF  +  RD VS  A+I+ YA Q  L 
Sbjct: 428 SWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLS 487

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
            EA+ LF+++Q+ G + + +++ + L+A +  A+L  GK +H  +    + S + + N++
Sbjct: 488 SEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAV 547

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           ++MY+K G+L  +R++F  M    VISWN M+  +++HG   +V+  F  M  E K+ P+
Sbjct: 548 LNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKL-PN 606

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            VT+++V+S CSHGG+   G+ +F  ++       P  EHY C+VD++ RAG++  A +F
Sbjct: 607 DVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKF 666

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I   P +P   I  ++LGA +VH +V+      + LME+ P+ +  YV+LSNLY   G+ 
Sbjct: 667 IAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKK 726

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEA 541
           ++  ++R LM EK + K+P  S I + + +H F   D ++    E+  ++++LS++  +A
Sbjct: 727 DEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELERLSLEMAKA 786

Query: 542 GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           GY PD + +L+DV +EQK+++L  HSEKLA+ FGLI T  G  +R+IKNLR+C DCH   
Sbjct: 787 GYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTAT 846

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KF+SK+ GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 847 KFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 185/367 (50%), Gaps = 9/367 (2%)

Query: 63  TLLNAC-VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
            +L AC  +   L  G+R+H  +  T      Y+ T L+  Y KC  + DARK+FD +R 
Sbjct: 104 AVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRH 163

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           + VV W AMI+AY+Q+ H  +A+ +F  ML    +    TF  VL +C+     E+ K +
Sbjct: 164 KRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLV 223

Query: 182 HSLIIKSNFESHIY---VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             L ++     H++     ++L++ Y   G + +A   F      +++  TA+I+ Y Q 
Sbjct: 224 -KLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS-RHRLELILATAMITQYTQR 281

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              +EA+ELF+ + +EG+  + +   +VL A SG   L  G+ +H  +       +V   
Sbjct: 282 ERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAG 341

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           N+LI+MY KCGSL  +  VF +M  R VISWN ++  + +H    E + L +LM+ +  V
Sbjct: 342 NALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDG-V 400

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           K D ++++  L  C+      +G  +   IV+   G + ++     ++DM G      +A
Sbjct: 401 KADKISFVNALPLCATSEALAKGRMIHSWIVE--SGIKADVMLDNAILDMYGSCKSTDDA 458

Query: 419 LEFIKNM 425
               + M
Sbjct: 459 SRVFRAM 465



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 189/390 (48%), Gaps = 19/390 (4%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           E   L+  CV +R        H H+  + +       T L+ FY  C  L  A + F   
Sbjct: 218 EVAKLVKLCVEERE-------HDHLHDSSFA------TALVNFYGSCGDLEQAFRAFSRH 264

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
           R   +++ TAMI+ Y+Q+    EAL LF  ML    + +      VL +C+G  G E G+
Sbjct: 265 RLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGR 323

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            IH  + +  F+ H+  G++L++MY K G + EA  VF  +  RDV+S   II+ + Q  
Sbjct: 324 IIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHS 383

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
              EA+ L   +Q++G+ ++ +++ + L   +   AL  G+ +HS ++   I + V+L N
Sbjct: 384 QHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKV 358
           +++DMY  C S   + RVF  M  R  +SWNAM+  Y+    +  E + LF  M + +  
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLSSEALLLFQQM-QLHGF 502

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            PD ++++A LS C+       G  +   I +   G E  +     V++M  ++G +  A
Sbjct: 503 MPDVISFVAALSACAAQASLAEGKLLHDRIRET--GLESNMTVANAVLNMYAKSGTLVLA 560

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            +    MP  P       ++ A   H + D
Sbjct: 561 RKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 23/376 (6%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  LL+   + R+L  G+ VHA + K+      ++   L+  Y  C  L DA+  FD M 
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGK 179
            ++ ++W  +I A+ Q   S +AL+LF  M      P    F  VL +C A     E G+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           +IH ++  +  ES  YV ++LL MY K   + +AR VF+ +  + VV   A+I+ YAQ  
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV--------HSHVLRFEI 291
             E+AI++F  + +EG+ +  +T+  VL A S L  L   K V        H H+     
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF 240

Query: 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351
            +      +L++ Y  CG L  + R F       +++  AM+  Y++     E +ELF +
Sbjct: 241 AT------ALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKV 293

Query: 352 MREENKVKPDSVTYLAVLSGCS--HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
           M  E  VK D +  +AVL+ CS   G  E R +  F   +     F+  +     +++M 
Sbjct: 294 MLLEG-VKLDRIACMAVLNACSGPRGLEEGRIIHGFMREIR----FDRHVNAGNALINMY 348

Query: 410 GRAGRVGEALEFIKNM 425
           G+ G + EA+E  ++M
Sbjct: 349 GKCGSLEEAVEVFRSM 364


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/563 (38%), Positives = 334/563 (59%), Gaps = 12/563 (2%)

Query: 77  GQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISA 133
           G + H  + K  C   P +++T LI  Y K   + +ARK+F+E     +  V + A++S 
Sbjct: 68  GSQFHGQITKVGCVFEP-FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSG 126

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y   +   EA+ LF +M       N  T   ++ +C      ELG  +H   +K  F+S 
Sbjct: 127 YVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSD 186

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + V +  + MY K G ++ A+ +F+ +P + ++S  A++SGYAQ GL    +EL+R + +
Sbjct: 187 VSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM 246

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G+  + VT   VL++ + L A   G +V   +      S   L N+LI+MY++CG+LT 
Sbjct: 247 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTK 306

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++ VFD M ERT++SW A++ GY  HG G   V+LF  M     ++PD   ++ VLS CS
Sbjct: 307 AQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG-IEPDGTAFVCVLSACS 365

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+ D+GL  F +++      EP  EHY C+VD+LGRAGR+ EA   I++MP +P  A+
Sbjct: 366 HAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 424

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            G+LLGAC++H NV++ E   +R++E+EPEN G YV+LSN+Y++A   + V R+R +MKE
Sbjct: 425 WGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKE 484

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K + KDPG S++EL   +H F   DR+H   +E+   +++L     +    P+      +
Sbjct: 485 KKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----N 540

Query: 554 VDEEQKEKVL-LG-HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
            +E  K+    +G HSEKLA+ FGL+ T  GA + +IKNLRIC DCH F K VSK+  R+
Sbjct: 541 REESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQ 600

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +++RD  RFHH   G+CSC DYW
Sbjct: 601 LTVRDATRFHHFRNGSCSCKDYW 623



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 8/350 (2%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W   +   +++    +AL+L+ +MLR    PN FTF   L SCA      LG Q H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSC-TAIISGYAQLGLDEEA 244
           K       +V + L+ MY K   +  AR VF E    R +  C  A++SGY       EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR++  EG+  N VT   ++ A      L  G  +H   L++   S V + N  I M
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y KCGS+ Y++++FD M  + +ISWNAM+ GY+++G+   V+EL+  M + N V PD VT
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM-DMNGVHPDPVT 255

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            + VLS C++ G +  G  V  +I     GF         +++M  R G + +A      
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQ--ASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 313

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILS 472
           MP E T     +++G   +H + +I   + + ++   IEP+      +LS
Sbjct: 314 MP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 362



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 177/351 (50%), Gaps = 10/351 (2%)

Query: 38  SNGQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY 94
           SN + ++A++   +M   G+ +       L+ ACV+   L  G  +H   +K  +   V 
Sbjct: 129 SNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVS 188

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           +    I  Y KC  ++ A+K+FDEM  + ++SW AM+S Y+Q   +   L L+  M  + 
Sbjct: 189 VVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG 248

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P+  T   VL+SCA      +G ++   I  S F S+ ++ ++L++MYA+ G + +A+
Sbjct: 249 VHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQ 308

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
            VF+ +PER +VS TAII GY   G  E A++LF+++   G+  +   +  VL+A S   
Sbjct: 309 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 368

Query: 275 ALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS-WNAM 332
               G +    + R +++       + ++D+  + G L  ++ + ++M  +   + W A+
Sbjct: 369 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 428

Query: 333 LVGYSKHGMGREVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMEDRGL 382
           L     H    + VEL  L  E   +++P+++ Y  +LS         +G+
Sbjct: 429 LGACKIH----KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGV 475


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 332/546 (60%), Gaps = 2/546 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      Y  +L  C   R +  G+++H+  +KT +   +Y+   LI  Y+K  
Sbjct: 335 QMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYG 394

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            L  AR++ + ++E++VVSWT+MI+ Y Q     +AL  F  M +    P+    A+ ++
Sbjct: 395 WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
            CAG      G QIH+ I  S +   + + ++L+++YA+ GRI EA   FE +  +D ++
Sbjct: 455 GCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGIT 514

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
              ++SG+AQ GL EEA+++F ++   G+  N  T+ S L+A + LA +  GKQ+H+ V+
Sbjct: 515 GNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           +        + N+LI +Y KCGS   ++  F  MSER  +SWN ++   S+HG G E ++
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M++E  +KP+ VT++ VL+ CSH G+ + GL+ F  + D + G  P  +HY CV+D
Sbjct: 635 LFDQMKKEG-IKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD-EYGIRPRPDHYACVID 692

Query: 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467
           + GRAG++  A +FI+ MP    A +  +LL AC+VH N+++GEF  + L+E+EP ++ +
Sbjct: 693 IFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSAS 752

Query: 468 YVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREEL 527
           YV+LSN YA   +W +  +VR++M+++ V K+PGRSWIE+  ++H F   DR HP+ E++
Sbjct: 753 YVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812

Query: 528 SAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRV 587
              +  ++ +  + GY  +   + +D ++E ++   L HSEKLA+TFGL+  P   P+RV
Sbjct: 813 YNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRV 872

Query: 588 IKNLRI 593
           IKNLR+
Sbjct: 873 IKNLRV 878



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 195/368 (52%), Gaps = 7/368 (1%)

Query: 60  EYDTLLNACV-NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           ++   L AC  N R  +    +HA  +         +   LI  Y+K   +  AR++F+E
Sbjct: 43  DFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEE 102

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           +  R+ VSW AM+S Y+Q     EAL L+ +M R+   P  +  ++VL+SC  A  F  G
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           + IH+   K  F S I+VG++++ +Y + G    A  VF  +P RD V+   +ISG+AQ 
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  E A+E+F ++Q  G+  + VT +S+L A + L  L  G Q+HS++ +  I S  +++
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIME 282

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL+D+Y KCG +  +  +F++     V+ WN MLV + +     +  ELF  M+    +
Sbjct: 283 GSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG-I 341

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P+  TY  +L  C+     D G  +    +  K GFE ++   G ++DM  + G + +A
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHS--LSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399

Query: 419 ---LEFIK 423
              LE +K
Sbjct: 400 RRVLEMLK 407



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 203/375 (54%), Gaps = 4/375 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM   GL        +LL AC +   L+ G ++H+++ K        +   L+  Y KC 
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG 293

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  A  +F+     NVV W  M+ A+ Q     ++  LF +M  +   PN+FT+  +L 
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C      +LG+QIHSL +K+ FES +YV   L+DMY+K G + +AR V E L E+DVVS
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+GY Q    ++A+  F+++Q  G+  + +  AS ++  +G+ A+  G Q+H+ + 
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
                  V + N+L+++Y++CG +  +   F+ M  +  I+ N ++ G+++ G+  E ++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALK 533

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           +F  M +++ VK +  T+++ LS  ++     +G  +   ++     FE E+ +   ++ 
Sbjct: 534 VFMRM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALIS 590

Query: 408 MLGRAGRVGEA-LEF 421
           + G+ G   +A +EF
Sbjct: 591 LYGKCGSFEDAKMEF 605



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 3/366 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L++C        G+ +HA   K  +   +++   +I  Y +C     A ++F +M  R
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR 207

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V++  +IS ++Q  H   AL +F  M  S   P+  T +++L +CA     + G Q+H
Sbjct: 208 DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S + K+   S   +  SLLD+Y K G +  A  +F      +VV    ++  + Q+    
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ ELF ++Q  G+  N  TY  +L   +    +  G+Q+HS  ++    S + +   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSK G L  +RRV + + E+ V+SW +M+ GY +H   ++ +  F  M ++  + PD+
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCGIWPDN 446

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +   + +SGC+      +GL +   I     G+  ++  +  +V++  R GR+ EA    
Sbjct: 447 IGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARCGRIREAFSSF 504

Query: 423 KNMPFE 428
           + M  +
Sbjct: 505 EEMELK 510



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 191/426 (44%), Gaps = 46/426 (10%)

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG-AFGFEL 177
           M  R   S    ++ +       + L+LF    R         FA  L +C G    +++
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
             +IH+  +      +  VG+ L+D+Y+K G +  AR VFE L  RD VS  A++SGYAQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            GL EEA+ L+R++   G++      +SVL++ +       G+ +H+   +    S + +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            N++I +Y +CGS   + RVF +M  R  +++N ++ G+++ G G   +E+F  M + + 
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSG 239

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + PD VT  ++L+ C+  G   +G  +   +   K G   +    G ++D+  + G V  
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLF--KAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 418 ALEFIKN-----------------------MPFE-----------PTAAILGSLLGACRV 443
           AL    +                         FE           P       +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYV--ILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
              +D+GE +    ++   E +  YV  +L ++Y+  G  E   RV E++KEK V     
Sbjct: 358 TREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV---- 412

Query: 502 RSWIEL 507
            SW  +
Sbjct: 413 -SWTSM 417



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M   G++     + + L+A  N   ++ G+++HA +IKT +     +   LI  Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC    DA+  F EM ERN VSW  +I++ SQ     EAL+LF +M +   +PN+ TF 
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 164 TVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            VL +C+     E G     S+  +          + ++D++ +AG++  A+   E +P
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMP 711


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 332/545 (60%), Gaps = 41/545 (7%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP- 157
           L+  Y +   +S+AR++FD M  R+VVSW  M+S Y+++    EA  LF      D  P 
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPV 252

Query: 158 -NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFES------------------------ 192
            + FT+  V++  A     E  +++   + + N  S                        
Sbjct: 253 RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 193 ---HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
              ++   +++L  YA+AG + EA+ VF+ +P++D VS  A+++ Y+Q G  EE ++LF 
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFI 372

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++   G   N   +A VL+  + +AAL  G Q+H  ++R        + N+L+ MY KCG
Sbjct: 373 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
           ++  +R  F+ M ER V+SWN M+ GY++HG G+E +E+F++MR     KPD +T + VL
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRT-TSTKPDDITLVGVL 491

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+ ++G++ F+ +     G   + EHY C++D+LGRAGR+ EA + +K+MPFEP
Sbjct: 492 AACSHSGLVEKGISYFYSM-HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            + + G+LLGA R+H N ++G    +++ E+EPENAG YV+LSN+YAS+G+W D  ++R 
Sbjct: 551 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRV 610

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +M+E+ V K PG SWIE+   +HTF A D  HP +E++ A ++ L ++ K+AGYV     
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN----FAKFVS 605
           VL+DV+EE+KE +L  HSEKLA+ +G++  P G PIRVIKNLR+C DCHN    + + + 
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKAWIELML 730

Query: 606 KVYGR 610
           KV GR
Sbjct: 731 KVSGR 735



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 189/448 (42%), Gaps = 74/448 (16%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V    + I  + +   ++DA ++F  M  R+  ++ AM++ YS        L L   +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGR----LPLAASL 91

Query: 151 LRSDTEPNEFTFATVL------TSCAGAFG-FELGKQIHSLIIKSNFESHIYVG------ 197
            R+   P+ +++ T+L      +S A A G F+      S+       SH   G      
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 198 --------------SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
                         + +L  Y + GR+ EARG+F    E DV+S  A++SGY Q G   E
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLI 302
           A ELF ++    ++S  +        +SG A    G  V +  L    P   V    +++
Sbjct: 212 ARELFDRMPGRDVVSWNIM-------VSGYAR--RGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             Y++ G L  +RRVFD M ER  +SWNAM+  Y +  M  E  ELFN+M   N      
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----V 317

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--FEPEIEHY---GCVVDMLGRAGRVGE 417
            ++  +L+G +  GM +   AVF + +  KD   +   +  Y   GC  + L     +G 
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 418 ALEFIKNMPFE---PTAAILGSLLGACRVHYNV-----DIGEFVGQRLMEIEPENAGNYV 469
             E++    F     T A + +L    ++H  +      +G FVG  L+           
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLA---------- 426

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVT 497
               +Y   G  ED     E M+E+ V 
Sbjct: 427 ----MYFKCGNMEDARNAFEEMEERDVV 450



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 37  CSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           CS   L +  IEM   G  +    +  +L+ C +   L  G ++H  +I+  Y    ++ 
Sbjct: 363 CSEETL-QLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVG 421

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  + DAR  F+EM ER+VVSW  MI+ Y++     EAL +F  M  + T+
Sbjct: 422 NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481

Query: 157 PNEFTFATVLTSCAGAFGFELG-----KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           P++ T   VL +C+ +   E G        H   + +  E +    + ++D+  +AGR+ 
Sbjct: 482 PDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLA 537

Query: 212 EARGVFECLP 221
           EA  + + +P
Sbjct: 538 EAHDLMKDMP 547



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 143/333 (42%), Gaps = 48/333 (14%)

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            E  +   +  +  + +AGR+ +A  +F  +P R   +  A+++GY+  G    A  LFR
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKC 308
            +       NY +Y ++L AL+  ++L   + +       E+P    V  N +I  ++  
Sbjct: 94  AIPRP---DNY-SYNTLLHALAVSSSLADARGLFD-----EMPVRDSVTYNVMISSHANH 144

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G ++ +R  FD   E+  +SWN ML  Y ++G   E   LFN     ++ + D +++ A+
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN-----SRTEWDVISWNAL 199

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-- 426
           +SG    G     ++   E+ D   G   ++  +  +V    R G + EA       P  
Sbjct: 200 MSGYVQWG----KMSEARELFDRMPG--RDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253

Query: 427 --FEPTAAILG----SLLGACR-----------VHYNVDIGEFVGQRLMEIEPE------ 463
             F  TA + G     +L   R           V +N  +  ++ +R+M+   E      
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 464 --NAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
             N  ++  +   YA AG  E+   V + M +K
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/629 (35%), Positives = 355/629 (56%), Gaps = 37/629 (5%)

Query: 40   GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
            G++      M   G+      + T+ ++C        G +V  H+I+  +   V +   L
Sbjct: 458  GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 517

Query: 100  IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
            I  ++    + +A  +FD M E +++SW AMISAY+      E+L  F  M     E N 
Sbjct: 518  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 577

Query: 160  FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
             T +++L+ C+     + G+ IH L++K   +S++ + ++LL +Y++AGR  +A  VF+ 
Sbjct: 578  TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 637

Query: 220  LPERDVVSCTAIISGYAQLG--LD--------------------------------EEAI 245
            + ERD++S  ++++ Y Q G  LD                                 EA+
Sbjct: 638  MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAV 697

Query: 246  ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
            + ++ ++ +G+ +NY+T  S L A + LA L  G+Q+H  V++    S + + N+ +DMY
Sbjct: 698  KAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMY 756

Query: 306  SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
             KCG +    ++      R+ +SWN ++  +++HG  ++  E F+ M +    KPD VT+
Sbjct: 757  GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP-KPDHVTF 815

Query: 366  LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +++LS C+HGG+ D GLA +  +   + G  P IEH  C++D+LGR+GR+  A  FIK M
Sbjct: 816  VSLLSACNHGGLVDEGLAYYDSMTR-EFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 874

Query: 426  PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
            P  P      SLL ACR+H N+++     + L+E++P +   YV+ SN+ A++G+WEDV 
Sbjct: 875  PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVE 934

Query: 486  RVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVP 545
             +R+ M    + K P  SW++L   +H+F   ++ HP    +SAK+ +L    KEAGYVP
Sbjct: 935  NLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVP 994

Query: 546  DMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVS 605
            D S  L+D+DEEQKE  L  HSE+LAL FGLI TPE + +R+ KNLR+C DCH+  KFVS
Sbjct: 995  DTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVS 1054

Query: 606  KVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             + GRK+ LRD  RFHH   G CSCGDYW
Sbjct: 1055 GIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/519 (25%), Positives = 230/519 (44%), Gaps = 100/519 (19%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           +++ C+ G+L +AL  +++    +    Y  +L  C++++  + G  +H H+I   +   
Sbjct: 5   IQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSD 64

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           ++L T+LI+FY K   +  AR +FD M ER+VVSWTAM+S YSQ     +A  LF  M  
Sbjct: 65  LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRH 124

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              + N                                        +L+D ++K G++ +
Sbjct: 125 CGVKANH---------------------------------------ALVDFHSKCGKMED 145

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  +F  + ERDVVS  A+I GYA  G  +++  +FR +   G++ +  T  SVL A + 
Sbjct: 146 ASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAE 205

Query: 273 LAALGHGKQVHSHVLRFEIPSYVV------------------------------------ 296
              L    Q+H  + +    SY +                                    
Sbjct: 206 GGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTAL 265

Query: 297 -----------LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR-- 343
                      + N+LIDMY+K G +  ++R FD M E+ VISW +++ GY+KHG G   
Sbjct: 266 ITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMA 325

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
               +F+ MR  N+      ++  +LSG    G+ +  + +F ++     G EP      
Sbjct: 326 HARYVFDEMRHRNE-----ASWSTMLSGYVRVGLYEEAVGLFCQMWGL--GVEPNGFMVA 378

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL-LGACRVHYNVDIG-EFVGQRLMEIE 461
            ++    R+G + +  E  +   F     ILG + +G   VH+   IG  +  Q+L E  
Sbjct: 379 SLITACSRSGYMAD--EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 436

Query: 462 PE-NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD 499
           P+ N  ++  L   Y+ +G   +V  V + M+++ V+ +
Sbjct: 437 PDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 475



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 178/325 (54%), Gaps = 3/325 (0%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRG-GQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +M  LG+E       +L+ AC     +   G +VH  ++KT     VY+ T L+ FY   
Sbjct: 364 QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 423

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             + +A+K+F+EM + NVVSWT+++  YS   +  E LN++ RM +     N+ TFATV 
Sbjct: 424 GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVT 483

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +SC       LG Q+   II+  FE  + V +SL+ M++    + EA  VF+ + E D++
Sbjct: 484 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 543

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  A+IS YA  GL  E++  F  ++     +N  T +S+L+  S +  L  G+ +H  V
Sbjct: 544 SWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLV 603

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + S V + N+L+ +YS+ G    +  VF  M+ER +ISWN+M+  Y + G   + +
Sbjct: 604 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 663

Query: 347 ELFNLMREENKVKPDSVTYLAVLSG 371
           ++   + +    KPD VT+ A++ G
Sbjct: 664 KILAELLQMG--KPDRVTWNALIGG 686



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 222/516 (43%), Gaps = 127/516 (24%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+ F++KC  + DA  +F  M ER+VVSW AMI  Y+ +  + ++  +F  MLR    P+
Sbjct: 133 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPD 192

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH------------------------- 193
            +T  +VL + A   G  +  QIH +I +  + S+                         
Sbjct: 193 CYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRK 252

Query: 194 ---------------------IY-VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231
                                IY +G++L+DMYAK+G I +A+  F+ + E++V+S T++
Sbjct: 253 GMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSL 312

Query: 232 ISGYAQ---------------------------------LGLDEEAIELFRKLQVEGMIS 258
           ISGYA+                                 +GL EEA+ LF ++   G+  
Sbjct: 313 ISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP 372

Query: 259 NYVTYASVLTALSGLAALG-HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
           N    AS++TA S    +   G QVH  V++  I   V +  +L+  Y   G +  ++++
Sbjct: 373 NGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKL 432

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F+ M +  V+SW +++VGYS  G   EV+ ++  MR+E  V  +  T+  V S C  G +
Sbjct: 433 FEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG-VSGNQNTFATVTSSC--GLL 489

Query: 378 EDR--GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPTAA 432
           ED+  G  V   I+  + GFE  +     ++ M      V EA     +M         A
Sbjct: 490 EDQVLGYQVLGHII--QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 547

Query: 433 ILGSLL--GACR-----VHY------------------------NVDIGEFVGQRLMEIE 461
           ++ +    G CR      H+                        N+  G  +   ++++ 
Sbjct: 548 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 607

Query: 462 PENAGNYVI---LSNLYASAGRWEDVTRVRELMKEK 494
            ++  N  I   L  LY+ AGR ED   V + M E+
Sbjct: 608 LDS--NVCICNTLLTLYSEAGRSEDAELVFQAMTER 641


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 333/564 (59%), Gaps = 16/564 (2%)

Query: 77  GQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISA 133
           G+++H H+ KT C   P +++T LI  Y KC  + +ARK+FDE     +  V + +++S 
Sbjct: 29  GKQLHCHVFKTGCLLEP-FVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSG 87

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y+  +   + + LF  M     E N  T   ++  C       LG  +H   +K   +  
Sbjct: 88  YALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMD 147

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
             VG+ LL MY K+G I   R +F+ +P + +++  A+I+GYAQ GL    +EL+++++ 
Sbjct: 148 SSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMES 207

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G   + +T   VL++ + L AL  GK+V   +  F   S   L N+L++MY++CG+L  
Sbjct: 208 KGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKK 267

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R +FD M  ++V+SW A++ GY  HG G   V LF+ M     +KPD   +++VLS CS
Sbjct: 268 ARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIR-GGIKPDGTAFVSVLSACS 326

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+ ++GL  F  +++ K G  P  EHY C+VD+LGRAGR+ EA E I++M      A+
Sbjct: 327 HAGLTNKGLDYFG-VMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGAL 385

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            G+LLGAC++H NV++ E   ++++E+EP N G YV+LSN+Y  AG  E + RVR LM++
Sbjct: 386 WGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRK 445

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           + + KDPG S++E    +H F A DR+HP   E+  K+ +L         V D+     +
Sbjct: 446 RKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELE------NLVKDLDGCKKN 499

Query: 554 VDEEQKEKVL--LG-HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR 610
            D E++E+ L  +G HSEKLA+ F L+ T +   I +IKNLRIC DCH F K VSK+  R
Sbjct: 500 -DHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDR 558

Query: 611 KVSLRDKNRFHHIVEGTCSCGDYW 634
           +  +RD  RFHH   G CSC +YW
Sbjct: 559 QFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 148/294 (50%), Gaps = 12/294 (4%)

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           MLRS   PN FTF   + SCA       GKQ+H  + K+      +V +SL+ MY K   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 210 IHEARGVFECLPE-RDVVSC-TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           I  AR +F+  P+ R +  C  +++SGYA     ++ + LF +++  G+  N VT   ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
                   LG G  VH   ++F +     + N L+ MY K G +   R++FD M  + +I
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           +WNAM+ GY+++G+   V+EL+  M E     PD +T + VLS C+H G     L+V  E
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEM-ESKGFCPDPLTLVGVLSSCAHLG----ALSVGKE 235

Query: 388 IVDCKDGFEPEIEHY--GCVVDMLGRAGRVGEALEFIKNMPFEPT---AAILGS 436
           +    +GF      +    +V+M  R G + +A +    MP +      AI+G 
Sbjct: 236 VERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGG 289



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 12/221 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L++C +   L  G+ V   M    +    +L   L+  Y +C  L  AR +FD M  ++
Sbjct: 220 VLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKS 279

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSWTA+I  Y        A+ LF  M+R   +P+   F +VL++C+ A     G     
Sbjct: 280 VVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFG 339

Query: 184 LI-----IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           ++     ++   E +    S ++D+  +AGR++EAR + E +  R   +    + G  ++
Sbjct: 340 VMERKYGLRPGAEHY----SCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKI 395

Query: 239 GLDEEAIELFRKLQVEGMISN---YVTYASVLTALSGLAAL 276
             + E  EL  +  +E   +N   YV  ++V T    L  +
Sbjct: 396 HRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGI 436


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/622 (35%), Positives = 350/622 (56%), Gaps = 80/622 (12%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            +EM  LG +  F  Y ++L+AC +   L+ G  +HA +++  +    +L + LI  Y K
Sbjct: 262 FVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAK 321

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C CL+ AR++F+ + E+N VSWT +IS  +Q     +AL LF +M ++    +EFT AT+
Sbjct: 322 CGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATI 381

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---------------- 209
           L  C+G      G+ +H   IKS  +S + VG++++ MYA+ G                 
Sbjct: 382 LGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDT 441

Query: 210 ---------------IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
                          I  AR  F+ +PER+V++  +++S Y Q G  EE ++L+  ++ +
Sbjct: 442 ISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSK 501

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
            +  ++VT+A+ + A + LA +  G QV SHV +F + S V + NS++ MYS+CG +  +
Sbjct: 502 AVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEA 561

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCS 373
           R+VFD++  + +ISWNAM+  ++++G+G + +E + +++R E   KPD ++Y+AVLS   
Sbjct: 562 RKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTE--CKPDHISYVAVLS--- 616

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
                                            D+LGRAG + +A   I  MPF+P A +
Sbjct: 617 ---------------------------------DLLGRAGLLDQAKNLIDGMPFKPNATV 643

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            G+LLGACR+H++  + E   ++LME+  E++G YV+L+N+YA +G  E+V  +R+LMK 
Sbjct: 644 WGALLGACRIHHDSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKV 703

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG-YVPDMSCVLY 552
           K + K PG SWIE+D  +H F   + SHP   E+  K++++  K ++ G YV  +SC   
Sbjct: 704 KGIRKSPGCSWIEVDNRVHVFTVDETSHPQINEVYVKLEEMMKKIEDTGRYVSIVSC--- 760

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
                QK      HSEKLA  FGL+  P   PI+V KNLR+C DCH   K +S V  R++
Sbjct: 761 -AHRSQKY-----HSEKLAFAFGLLSLPPWMPIQVTKNLRVCNDCHLVIKLLSLVTSREL 814

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD  RFHH  +G CSC DYW
Sbjct: 815 IMRDGFRFHHFKDGFCSCRDYW 836



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 221/489 (45%), Gaps = 78/489 (15%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS--------- 110
            Y   + AC    + R   ++HAH+IK        ++  L+  Y KC  ++         
Sbjct: 144 SYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLNI 203

Query: 111 ----------------------DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
                                 +A  +F  M ER+ VSW  +IS +SQ  H    L+ F+
Sbjct: 204 ESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFV 263

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
            M     +PN  T+ +VL++CA     + G  +H+ I++       ++GS L+DMYAK G
Sbjct: 264 EMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCG 323

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  AR VF  L E++ VS T +ISG AQ GL ++A+ LF +++   ++ +  T A++L 
Sbjct: 324 CLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILG 383

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG-----SLTY---------- 313
             SG      G+ +H + ++  + S+V + N++I MY++CG     SL +          
Sbjct: 384 VCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTIS 443

Query: 314 ----------------SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
                           +R+ FD M ER VI+WN+ML  Y +HG   E ++L+ LMR +  
Sbjct: 444 WTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSK-A 502

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           VKPD VT+   +  C+       G  V   +   K G   ++     +V M  R G++ E
Sbjct: 503 VKPDWVTFATSIRACADLATIKLGTQVVSHVT--KFGLSSDVSVANSIVTMYSRCGQIKE 560

Query: 418 ALEFIKNMPFEP-------TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           A +   ++  +         AA   + LG      N  I  +      E +P++     +
Sbjct: 561 ARKVFDSIHVKNLISWNAMMAAFAQNGLG------NKAIETYEDMLRTECKPDHISYVAV 614

Query: 471 LSNLYASAG 479
           LS+L   AG
Sbjct: 615 LSDLLGRAG 623



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 213/492 (43%), Gaps = 77/492 (15%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE------------------ 118
            +++HA +I +     ++L   L+  Y+ C  + DA ++F E                  
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 119 ---MRE------------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP----NE 159
              MRE            R+ VSWT MIS Y Q      ++  F+ MLR         + 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI--------- 210
           F++   + +C          Q+H+ +IK +  +   + +SL+DMY K G I         
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLN 202

Query: 211 ----------------------HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
                                 +EA  VF  +PERD VS   +IS ++Q G     +  F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
            ++   G   N++TY SVL+A + ++ L  G  +H+ +LR E      L + LIDMY+KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G L  +RRVF+++ E+  +SW  ++ G ++ G+  + + LFN MR+ + V  D  T   +
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVL-DEFTLATI 381

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           L  CS       G  +    +  K G +  +     ++ M  R G   +A    ++MP  
Sbjct: 382 LGVCSGQNYAATGELLHGYAI--KSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLR 439

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRV 487
            T +    +    +   N DI     ++  ++ PE N   +  + + Y   G  E+  ++
Sbjct: 440 DTISWTAMITAFSQ---NGDIDR--ARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKL 494

Query: 488 RELMKEKAVTKD 499
             LM+ KAV  D
Sbjct: 495 YVLMRSKAVKPD 506



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 111/221 (50%), Gaps = 15/221 (6%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K  + M +  ++  +  + T + AC +  T++ G +V +H+ K      V +   ++  Y
Sbjct: 493 KLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMY 552

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
           ++C  + +ARK+FD +  +N++SW AM++A++Q     +A+  +  MLR++ +P+  ++ 
Sbjct: 553 SRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYV 612

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE--------ARG 215
            VL+   G  G  L  Q  +LI    F+ +  V  +LL     A RIH         A+ 
Sbjct: 613 AVLSDLLGRAG--LLDQAKNLIDGMPFKPNATVWGALLG----ACRIHHDSILAETAAKK 666

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
           + E L   D      + + YA+ G  E   ++ + ++V+G+
Sbjct: 667 LME-LNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGI 706


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 342/604 (56%), Gaps = 52/604 (8%)

Query: 70  NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTA 129
           + + +R G   H H+I     PP+          +  + L+ A K+FD + + +   +  
Sbjct: 42  HSQIIRLGLSSHNHLI-----PPL---INFCARASTSDALTYALKLFDSIPQPDAFLYNT 93

Query: 130 MISAY--SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           +I  +  SQ   +   L L+  ML++   PN FTF ++L +C      + G QIH+ + K
Sbjct: 94  IIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK---IQHGMQIHAHLFK 150

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
             F +H    +SL+ MY     + EAR VF  +P  D VS T++ISGY++ GL +EA  +
Sbjct: 151 FGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTI 210

Query: 248 FRKL------QVEGMISNYV--------------------------TYASVLTALSGLAA 275
           F+ +          M++ YV                             ++L+A +GL A
Sbjct: 211 FQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGA 270

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAML 333
           L  GK +H ++ R  I     L  +++DMY KCG L  + +VF ++    R + SWN M+
Sbjct: 271 LDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMI 330

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            G + HG G   ++LF  M E  +V PD +T+L +L+ C+H G+ + G   F  ++    
Sbjct: 331 GGLAMHGNGEAAIQLFKEM-ERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVY- 388

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G EP +EH+GC+VD+LGRAG V EA + I  MP  P   +LG+LLGAC+ H N+++GE +
Sbjct: 389 GIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEI 448

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
           G+R++E+EP N+G YV+L+NLYA+AG+WED  +VR+LM ++ V K PG S IEL   +H 
Sbjct: 449 GRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHE 508

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL--YDVDEEQK-EKVLLGHSEKL 570
           F A +R+HP  +EL AKV ++    K  GYV D + VL  +D DEE+  E  L  HSEKL
Sbjct: 509 FIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKL 568

Query: 571 ALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
           A+ FGL  T  G  +R++KNLRIC DCH+  K +S V+ R++ +RD+ RFH    G CSC
Sbjct: 569 AIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSC 628

Query: 631 GDYW 634
            DYW
Sbjct: 629 QDYW 632



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 47/321 (14%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGR---IHEARGVFECLPERDVVSCTAIISGY 235
           +Q HS II+    SH ++   L++  A+A     +  A  +F+ +P+ D      II G+
Sbjct: 39  RQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGF 98

Query: 236 --AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
             +QL      + L+  +    ++ N  T+ S+L A   +    HG Q+H+H+ +F   +
Sbjct: 99  LHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQ---HGMQIHAHLFKFGFGA 155

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL-- 351
           + V  NSLI MY    +L  +RRVF  +     +SW +++ GYSK G+  E   +F L  
Sbjct: 156 HSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMP 215

Query: 352 -----------------------------MREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
                                        M+ EN    D      +LS C+  G  D+G 
Sbjct: 216 QKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGK 275

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI--LGSLLGA 440
            + HE +  ++G E + +    +VDM  + G + +AL+   ++P  P   I     ++G 
Sbjct: 276 WI-HEYIK-RNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL-PCRWISSWNCMIGG 332

Query: 441 CRVHYNVDIGEFVGQRLMEIE 461
             +H N   GE   Q   E+E
Sbjct: 333 LAMHGN---GEAAIQLFKEME 350



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE- 121
           T+L+AC     L  G+ +H ++ +        L T ++  Y KC CL  A ++F  +   
Sbjct: 260 TMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLP 319

Query: 122 -RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R + SW  MI   +   +   A+ LF  M R    P++ TF  +LT+CA +   E G+ 
Sbjct: 320 CRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRN 379

Query: 181 IHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 234
             S +I+    E  +     ++D+  +AG + EAR + + +P    V+    + G
Sbjct: 380 YFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLG 434


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 325/593 (54%), Gaps = 70/593 (11%)

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
           S AR +FD   E+NVV +  MI +Y       EAL++F  ML     P+ +TF  VL +C
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKAC 147

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVG-------------------------------S 198
           +G     +G Q+H  I+K   ++++++G                               +
Sbjct: 148 SGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207

Query: 199 SLLDMYAKAGRIHEA-------------------------------------RGVFECLP 221
           S++  YA++G+  +A                                       +FE + 
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMT 267

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           +++++S   +I+ Y    +  EA+ LF +++  GM  + VT AS+L A   L+AL  G++
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H ++ +  +   ++L+N+L+DMY+KCG L  +R VFD M  R V+SW +M+  Y + G 
Sbjct: 328 LHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
           G + V LF  M +  +  PDS+ +++VLS CSH G+ D+G   F  + + + G  P IEH
Sbjct: 388 GYDAVALFAKMLDSGQ-NPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE-QYGIVPRIEH 445

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           + C+VD+ GRAG V EA  FIK MP EP   + G+LL ACRVH  +DIG      L ++ 
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           P+ +G YV+LSN+YA AG W+DV  VR  MK+  + K PG S +EL+  +HTF A D+ H
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P  + +  ++  L  K KE GY+P     L+DV+ E KE  L  HSEKLA+ F ++ T +
Sbjct: 566 PQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQ 625

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G PIR+ KNLR+C DCH   K +SK+  R + +RD NRFHH   G CSCGDYW
Sbjct: 626 GTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 160/369 (43%), Gaps = 87/369 (23%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     LR G +VH  ++K      +++   L+  Y KC CL +ARK+ D+M 
Sbjct: 140 FPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199

Query: 121 ERNVVSWTAMISAYSQKAHSFEAL------------------------------------ 144
            R+VVSW +M++ Y+Q     +AL                                    
Sbjct: 200 YRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259

Query: 145 -NLFIRMLR--------------SDTEPNE-----------------FTFATVLTSCAGA 172
            N+F RM +              +++ PNE                  T A++L +C   
Sbjct: 260 HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDL 319

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
               LG+++H  I K N + ++ + ++LLDMYAK G + EAR VF+ +  RDVVS T+++
Sbjct: 320 SALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMM 379

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           S Y + G   +A+ LF K+   G   + + + SVL+A S    L  G+    H  R    
Sbjct: 380 SAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGR----HYFRMMTE 435

Query: 293 SYVVLQN-----SLIDMYSKCGSLTYSRRVFDNM----SERTVISWNAMLVG---YSKHG 340
            Y ++        ++D++ + G +  +      M    +ER    W A+L     +SK  
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV---WGALLSACRVHSKMD 492

Query: 341 MGREVVELF 349
           +G    +L 
Sbjct: 493 IGLVAADLL 501



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G++       +LL AC +   L  G+R+H ++ K   +P + L   L+  Y K
Sbjct: 294 FLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAK 353

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C CL +AR +FD+MR R+VVSWT+M+SAY +    ++A+ LF +ML S   P+   F +V
Sbjct: 354 CGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSV 413

Query: 166 LTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L++C+     + G+    ++ +       I   + ++D++ +AG + EA    + +P
Sbjct: 414 LSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 26/346 (7%)

Query: 174 GFELGKQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           G +   ++HS ++I  +      +   L+  Y+  G    AR +F+   E++VV    +I
Sbjct: 50  GIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMI 109

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
             Y    L  EA+ +F+ +       ++ T+  VL A SGL  L  G QVH  +++  + 
Sbjct: 110 RSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLD 169

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + + + N+L+ MY KCG L  +R+V D M  R V+SWN+M+ GY++ G   + +E+   M
Sbjct: 170 TNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM 229

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
              N +  D+ T  ++     +  +E+  +   H + +     +  +  +  ++ +    
Sbjct: 230 DSLN-LNHDAGTMASLSPVVCYTSLEN--VQYIHNMFE--RMTKKNLISWNVMIAIYVNN 284

Query: 413 GRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGE-FVGQRLME-IEPENAGN 467
               EA+     M     +P A  + SLL AC      D+   F+G+RL + IE  N   
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACG-----DLSALFLGRRLHKYIEKGNLQP 339

Query: 468 YVILSN----LYASAGRWE------DVTRVRELMKEKAVTKDPGRS 503
            ++L N    +YA  G  E      D  R+R+++   ++    GRS
Sbjct: 340 NLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 345/595 (57%), Gaps = 5/595 (0%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           +  +  + M  LG+      + TL+ +  +   L  G+++H+ +I+  +   + + T + 
Sbjct: 175 EAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLIS 234

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC  L  A    ++M  +N V+ T ++  Y++ A + +AL LF +M+    E + F
Sbjct: 235 NMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGF 294

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220
            F+ +L +CA       GKQIHS  IK   ES + VG+ L+D Y K  R   AR  FE +
Sbjct: 295 VFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESI 354

Query: 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280
            E +  S +A+I+GY Q G  + A+E+F+ ++ +G++ N   Y ++  A S ++ L  G 
Sbjct: 355 HEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGA 414

Query: 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340
           Q+H+  ++  + +Y+  ++++I MYSKCG + Y+ + F  + +   ++W A++  ++ HG
Sbjct: 415 QIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHG 474

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400
              E + LF  M + + V+P++VT++ +L+ CSH G+   G  +   + D + G  P I+
Sbjct: 475 KAFEALRLFKEM-QGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSD-EYGVNPTID 532

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460
           HY C++D+  RAG + EALE I+++PFEP      SLLG C  H N++IG      +  +
Sbjct: 533 HYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRL 592

Query: 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRS 520
           +P ++  YVI+ NLYA AG+W++  + R++M E+ + K+   SWI +   +H F   DR 
Sbjct: 593 DPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRH 652

Query: 521 HPMREELSAKVKQLSVKFKEAG-YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT 579
           HP  E++ +K+K+L+  FK++   + +    L D  E +++  LL HSE+LA+ +GLI T
Sbjct: 653 HPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQ--LLDHSERLAIAYGLICT 710

Query: 580 PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
               PI V KN R C DCH+FAK VS V GR++ +RD NRFHHI  G CSC DYW
Sbjct: 711 AADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 38/427 (8%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M  +G+ +    Y+ L   C     L  G+  H  + +       ++   ++  Y  C+ 
Sbjct: 83  MDKVGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKS 141

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
            + A + FD++ ++++ SW+ +ISAY+++    EA+ LF+RML     PN   F+T++ S
Sbjct: 142 FTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMS 201

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
                  +LGKQIHS +I+  F ++I + + + +MY K G +  A      +  ++ V+C
Sbjct: 202 FTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVAC 261

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
           T ++ GY +   + +A+ LF K+  EG+  +   ++ +L A + L  L  GKQ+HS+ ++
Sbjct: 262 TGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIK 321

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             + S V +   L+D Y KC     +R+ F+++ E    SW+A++ GY + G     +E+
Sbjct: 322 LGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEV 381

Query: 349 FNLMREENKVKPDSVTYLAVLSGCS-----------HGGMEDRGLAVF------------ 385
           F  +R +  V  +S  Y  +   CS           H     +GL  +            
Sbjct: 382 FKAIRSKG-VLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYS 440

Query: 386 --------HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAIL 434
                   H+     D  +P+   +  ++      G+  EAL   K M      P A   
Sbjct: 441 KCGQVDYAHQAFLTID--KPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTF 498

Query: 435 GSLLGAC 441
             LL AC
Sbjct: 499 IGLLNAC 505


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/599 (35%), Positives = 342/599 (57%), Gaps = 42/599 (7%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL---SDARKMFDEMRERNVVSWTA 129
           TL   +++HAH+ +       Y+ T L+ F      +   +    +F ++   N   ++A
Sbjct: 23  TLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSA 82

Query: 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +I AY++      ++ L+  ML ++  P  FTF+ + +         LG Q+H       
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNP---SLGSQLHLHAFLFG 139

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT-------------------- 229
           F + +YVG++++ MY K G +  AR VF+ +P RDVV+ T                    
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFV 199

Query: 230 -----------AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
                      ++++GY+Q  + ++A++ FRK++  G++++ +T    ++A + L   G+
Sbjct: 200 GLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGY 259

Query: 279 GKQVH--SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
              +   +   RF   S V + ++LIDMYSKCG++  +  VF  M E  V S+++M+VG+
Sbjct: 260 ADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGF 319

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           + HG  R  ++LF  M E N +KP+ VT++ + + CSH GM ++G  +F  + +C  G  
Sbjct: 320 AVHGRARSAIKLFYEMLE-NGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECY-GVS 377

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
           P  +HY C+ D+LGRAG + +AL+ ++ MP EP   + G+LLGA  +H N D+ E   + 
Sbjct: 378 PTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRS 437

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL-DQILHTFH 515
           L E+EP+N GNY++LS  YA A +W+DV+RVR+LM+EK + K+PG SW+E  + I+H F 
Sbjct: 438 LFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFF 497

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           A D  HP   E+   +  L  + K  GY P ++ V YD+D+E K  +L+ HSEKLAL +G
Sbjct: 498 AGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYG 557

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ T  G+ I+++KNLRIC DCH      SK+ GRK+ +RD  RFHH + G CSC ++W
Sbjct: 558 LLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 353/577 (61%), Gaps = 8/577 (1%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           EY+ +++A  + R L   Q+ HAH++ T C+R    L T+L+        ++  R++F  
Sbjct: 12  EYEAVVSAGPHLRRL---QQAHAHLVVTGCHRSRALL-TKLLTLSCAAGSIAYTRRLFRS 67

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           + + +   + ++I A S    S +A+  + RML S   P+ +TF +V+ +CA      LG
Sbjct: 68  VSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLG 127

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
             +HS +  S + S+ +V ++L+  YAK+     AR VF+ +P+R +++  ++ISGY Q 
Sbjct: 128 TIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQN 187

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           GL  EA+E+F K++  G   +  T+ SVL+A S L +L  G  +H  ++   I   VVL 
Sbjct: 188 GLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLA 247

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
            SL++M+S+CG +  +R VFD+M+E  V+SW AM+ GY  HG G E +E+F+ M+    V
Sbjct: 248 TSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVV 307

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
            P+ VTY+AVLS C+H G+ + G  VF  +   + G  P +EH+ C+VDM GR G + EA
Sbjct: 308 -PNRVTYVAVLSACAHAGLINEGRLVFASMKQ-EYGVVPGVEHHVCMVDMFGRGGLLNEA 365

Query: 419 LEFIKNMPFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
            +F++ +  E    A+  ++LGAC++H N D+G  V + L+  EPEN G+YV+LSN+YA 
Sbjct: 366 YQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYAL 425

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
           AGR + V  VR +M ++ + K  G S I+++   + F   D+SHP   E+   + +L  +
Sbjct: 426 AGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWR 485

Query: 538 FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
            K+AGY P     +++++EE++E  L  HSEKLA+ FGL+ T  G  +R++KNLRIC DC
Sbjct: 486 CKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDC 545

Query: 598 HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           H+  KF+S V  R++ +RDK RFHH  EG+CSC DYW
Sbjct: 546 HSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/498 (39%), Positives = 302/498 (60%), Gaps = 2/498 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  ARK+FDEM ERNV +W AM++  +      E+L LF+ M R    P+EF   +V   
Sbjct: 123 LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRC 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + E   V   LP   +VSC
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             II+G  Q G  E A+E F  ++  G+ ++ VT+ S +++ S LAAL  G+Q+H  V++
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V +   L+ MYS+CG L  S RVF           +AM+  Y  HG G++ +EL
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M      +P  VT+LA+L  CSH G+++ G+  F E++    G +P ++HY CVVD+
Sbjct: 363 FKQMMN-GGAEPSDVTFLALLYACSHSGLKEEGMDCF-ELMTKTYGIQPSVKHYTCVVDL 420

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I +MP  P   I  +LL AC+   N D+ E + +R++E++P ++ +Y
Sbjct: 421 LGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASY 480

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+ A++ RW DV+ VR+ M++  V K+PG SW+EL   +H F   D SHP ++E+ 
Sbjct: 481 VLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEID 540

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++++  K ++ GY PDMS VL+D+++E+KE  L  HSEKLA+ F  +  PEG PIRV+
Sbjct: 541 ECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVM 600

Query: 589 KNLRICVDCHNFAKFVSK 606
           KNLR+C DCH   K +S+
Sbjct: 601 KNLRVCDDCHLAIKLMSQ 618



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 34/271 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS----------- 227
           +Q+H+    S   +  +  + L+  YA  G +  AR +FE +P R+V+S           
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 228 --------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+++G   LG DEE++ LF  ++ EGM  +     SV 
Sbjct: 121 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFGLGSVS 180

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              +GL  +  G+QVH++V+R  +   + + +SL  MY +CG L     V   +   +++
Sbjct: 181 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 240

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           S N ++ G +++G     +E F +MR    V  D VT+++ +S CS      +G  +  +
Sbjct: 241 SCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISSCSDLAALAQGQQIHGQ 299

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           ++  K G +  +    C+V M  R G +G++
Sbjct: 300 VM--KAGVDKVVPVMTCLVHMYSRCGCLGDS 328



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 102/204 (50%)

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C   R +  G++VHA+++++     + + + L   Y +C CL +   +   +   ++VS 
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
             +I+  +Q   S  AL  F  M       +  TF + ++SC+       G+QIH  ++K
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
           +  +  + V + L+ MY++ G + ++  VF      D    +A+IS Y   G  ++AIEL
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 248 FRKLQVEGMISNYVTYASVLTALS 271
           F+++   G   + VT+ ++L A S
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYACS 386



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G+      + + +++C +   L  GQ++H  ++K      V + T L+  Y++C C
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++F      +    +AMISAY    H  +A+ LF +M+    EP++ TF  +L +
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   E G     L+ K+   +  +   + ++D+  ++G + EA  +   +P
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMP 438



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G  ++  T   ++ A + L  L   +++   + R  + S+    N L   Y K G L  +
Sbjct: 71  GAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSW----NILFGGYIKNGDLGGA 126

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           R++FD M ER V +WNAM+ G +  G   E + LF  MR E  + PD     +V   C+ 
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREG-MHPDEFGLGSVSRCCA- 184

Query: 375 GGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
            G+ D   G  V   +V  + G + ++     +  M  R G + E    ++ +P
Sbjct: 185 -GLRDVVTGRQVHAYVV--RSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 324/524 (61%), Gaps = 41/524 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + + L+AC     L  G +VHA + K+ Y   VY+ + LI  Y+KC  ++ A ++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ERN+V+W ++I+ Y Q   + EAL +F+RM+ S  EP+E T A+V+++CA     + G Q
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 181 IHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFE--------------------- 218
           IH+ ++K+N F   + +G++L+DMYAK  +++EAR VF+                     
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 219 ----------CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
                      + +R+VVS  A+I+GY Q G +EEA+ LFR L+ E +   + T+ ++L+
Sbjct: 330 SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLS 389

Query: 269 ALSGLAALGHGKQVHSHVLR--FEIPS----YVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322
           A + LA L  G+Q H+HVL+  FE  S     + + NSLIDMY KCGS+    RVF+ M 
Sbjct: 390 ACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK 449

Query: 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382
           ER  +SWNA++VGY+++G G E +++F  M    + KPD VT + VL  CSH G+ + G 
Sbjct: 450 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGE-KPDHVTMIGVLCACSHAGLVEEGR 508

Query: 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442
             F  + +   G  P  +HY C+VD+LGRAG + EA   I+ MP  P A + GSLL AC+
Sbjct: 509 HYFFSMEE--HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACK 566

Query: 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGR 502
           VH N+++G+   ++L+EI+P N+G YV+LSN+YA  GRW DV RVR+LM+++ VTK PG 
Sbjct: 567 VHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGC 626

Query: 503 SWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPD 546
           SWIE++  +H F   D+SHP R+++ + +K L+ + K  GY+PD
Sbjct: 627 SWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPD 670



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 227/434 (52%), Gaps = 72/434 (16%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LL++C+  R+ RG + VHA ++ T +   ++++ RLI  Y KC+CL DARK+FD M 
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP 77

Query: 121 ERNV-------------------------------VSWTAMISAYSQKAHSFEALNLFIR 149
           +RN                                 SW +M+S ++Q     E+L  F++
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R D   NE++F + L++CAG     +G Q+H+L+ KS + + +Y+GS+L+DMY+K G 
Sbjct: 138 MHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A  VF  + ER++V+  ++I+ Y Q G   EA+E+F ++   G+  + VT ASV++A
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 270 LSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS------ 322
            + L AL  G Q+H+ V++  +    +VL N+L+DMY+KC  +  +RRVFD MS      
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 323 -------------------------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
                                    +R V+SWNA++ GY+++G   E + LF L++ E+ 
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES- 376

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLA------VFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           + P   T+  +LS C++  + D  L       V  +  + + G E +I     ++DM  +
Sbjct: 377 IWPTHYTFGNLLSACAN--LADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMK 434

Query: 412 AGRVGEALEFIKNM 425
            G + +     + M
Sbjct: 435 CGSIEDGSRVFEKM 448



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 176/357 (49%), Gaps = 51/357 (14%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVY 94
           NG  ++AL   + M   GLE       ++++AC +   L+ G ++HA ++KT  +R  + 
Sbjct: 226 NGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLV 285

Query: 95  LRTRLIVFYNKCECLSDARKMFD-------------------------------EMRERN 123
           L   L+  Y KC  +++AR++FD                               +M +RN
Sbjct: 286 LGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRN 345

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VVSW A+I+ Y+Q   + EAL LF  + R    P  +TF  +L++CA      LG+Q H+
Sbjct: 346 VVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHT 405

Query: 184 LIIKSNF------ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            ++K  F      ES I+VG+SL+DMY K G I +   VFE + ERD VS  AII GYAQ
Sbjct: 406 HVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQ 465

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            G   EA+++FRK+ V G   ++VT   VL A S    +  G+    +    E    + L
Sbjct: 466 NGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRH---YFFSMEEHGLIPL 522

Query: 298 QN---SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVE 347
           ++    ++D+  + G L  ++ + + M      + W ++L     HG   MG+   E
Sbjct: 523 KDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAE 579



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 175/371 (47%), Gaps = 37/371 (9%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN   FA +L SC  +      + +H+ I+ + F   I++ + L+D+Y K   + +AR +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 217 FECLPER-------------------------------DVVSCTAIISGYAQLGLDEEAI 245
           F+ +P+R                               D  S  +++SG+AQ    EE++
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305
           E F K+  E  + N  ++ S L+A +GL  L  G QVH+ V +    + V + ++LIDMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365
           SKCGS+  +  VF  M ER +++WN+++  Y ++G   E +E+F  M +   ++PD VT 
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTL 251

Query: 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425
            +V+S C+       GL +   +V   + F  ++     +VDM  +  +V EA      M
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVK-TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485
                 +    + G  R   +V    F+  ++ +    N  ++  L   Y   G  E+  
Sbjct: 311 SIRNVVSETSMVSGYARAA-SVKAARFMFSKMTQ---RNVVSWNALIAGYTQNGENEEAL 366

Query: 486 RVRELMKEKAV 496
           R+  L+K +++
Sbjct: 367 RLFRLLKRESI 377


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 325/593 (54%), Gaps = 70/593 (11%)

Query: 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC 169
           S AR +FD   E+NVV +  MI +Y       EAL++F  ML     P+ +TF  VL +C
Sbjct: 88  SVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKAC 147

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVG-------------------------------S 198
           +G     +G Q+H  I+K   ++++++G                               +
Sbjct: 148 SGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207

Query: 199 SLLDMYAKAGRIHEA-------------------------------------RGVFECLP 221
           S++  YA++G+  +A                                       +FE + 
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMT 267

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           +++++S   +I+ Y    +  EA+ LF +++  GM  + VT AS+L A   L+AL  G++
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H ++ +  +   ++L+N+L+DMY+KCG L  +R VFD M  R V+SW +M+  Y + G 
Sbjct: 328 LHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
           G + V LF  M +  +  PDS+ +++VLS CSH G+ D+G   F  + + + G  P IEH
Sbjct: 388 GYDAVALFAKMLDSGQ-NPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE-QYGIVPRIEH 445

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           + C+VD+ GRAG V EA  FIK MP EP   + G+LL ACRVH  +DIG      L ++ 
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           P+ +G YV+LSN+YA AG W+DV  VR  MK+  + K PG S +EL+  +HTF A D+ H
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYH 565

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P  + +  ++  L  K KE GY+P     L+DV+ E KE  L  HSEKLA+ F ++ T +
Sbjct: 566 PQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQ 625

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G PIR+ KNLR+C DCH   K +SK+  R + +RD NRFHH   G CSCGDYW
Sbjct: 626 GTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 87/369 (23%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L AC     LR G +VH  ++K      +++   L+  Y KC CL +ARK+ D+M 
Sbjct: 140 FPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMP 199

Query: 121 ERNVVSWTAMISAYSQKAHSFEAL------------------------------------ 144
            R+VVSW +M++ Y+Q     +AL                                    
Sbjct: 200 YRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259

Query: 145 -NLFIRMLR--------------SDTEPNE-----------------FTFATVLTSCAGA 172
            N+F RM +              +++ PNE                  T A++L +C   
Sbjct: 260 HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDL 319

Query: 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
               LG+++H  I K N   ++ + ++LLDMYAK G + EAR VF+ +  RDVVS T+++
Sbjct: 320 SALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMM 379

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           S Y + G   +A+ LF K+   G   + + + SVL+A S    L  G+    H  R    
Sbjct: 380 SAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGR----HYFRMMTE 435

Query: 293 SYVVLQN-----SLIDMYSKCGSLTYSRRVFDNM----SERTVISWNAMLVG---YSKHG 340
            Y ++        ++D++ + G +  +      M    +ER    W A+L     +SK  
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV---WGALLSACRVHSKMD 492

Query: 341 MGREVVELF 349
           +G    +L 
Sbjct: 493 IGLVAADLL 501



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G++       +LL AC +   L  G+R+H ++ K   RP + L   L+  Y K
Sbjct: 294 FLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAK 353

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C CL +AR +FD+MR R+VVSWT+M+SAY +    ++A+ LF +ML S   P+   F +V
Sbjct: 354 CGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSV 413

Query: 166 LTSCAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           L++C+     + G+    ++ +       I   + ++D++ +AG + EA    + +P
Sbjct: 414 LSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 26/346 (7%)

Query: 174 GFELGKQIHS-LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232
           G +   ++HS ++I  +      +   L+  Y+  G    AR +F+   E++VV    +I
Sbjct: 50  GIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMI 109

Query: 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
             Y    L  EA+ +F+ +       ++ T+  VL A SGL  L  G QVH  +++  + 
Sbjct: 110 RSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLD 169

Query: 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
           + + + N+L+ MY KCG L  +R+V D M  R V+SWN+M+ GY++ G   + +E+   M
Sbjct: 170 TNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM 229

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
              N +  D+ T  ++     +  +E+  +   H + +     +  +  +  ++ +    
Sbjct: 230 DSLN-LNHDAGTMASLSPVVCYTSLEN--VQYIHNMFE--RMTKKNLISWNVMIAIYVNN 284

Query: 413 GRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGE-FVGQRLME-IEPENAGN 467
               EA+     M     +P A  + SLL AC      D+   F+G+RL + IE  N   
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACG-----DLSALFLGRRLHKYIEKGNLRP 339

Query: 468 YVILSN----LYASAGRWE------DVTRVRELMKEKAVTKDPGRS 503
            ++L N    +YA  G  E      D  R+R+++   ++    GRS
Sbjct: 340 NLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/609 (34%), Positives = 357/609 (58%), Gaps = 15/609 (2%)

Query: 33  LKTLCS-NGQLTKALI---EMATLGLEMRFEEYDTLLNAC-VNQRTLRGGQRVHAHMIKT 87
           L T+C+ +G+  +AL    EM   G++     +   +NAC      L  G+ +HA + + 
Sbjct: 106 LITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRY 165

Query: 88  CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLF 147
            ++  V   T L+  Y+KC  L ++ K F+ M E N VSW AMI+A+++     EAL   
Sbjct: 166 GFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTL 225

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207
            +M          T+ T++++       +  + IH  I+++ F+  +   + +L+MY K 
Sbjct: 226 QKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKC 283

Query: 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
           G + +A  +F+ + + DV++   +I+ Y+Q G   EA+  +  +Q EG++ +  TY SV+
Sbjct: 284 GCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVI 343

Query: 268 TALSGLAALGHGKQVHSHV--LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            A + L  +  GKQVH  +    F++     L NSL++MY KCG L  +R +FD  ++ +
Sbjct: 344 DACATLGDMEVGKQVHRRLGDRAFQVTE---LANSLVNMYGKCGILDVARSIFDKTAKGS 400

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V +WNAM+  Y++H   ++  ELF LMR + + +P  +T+++VLS C++ G+ +   + F
Sbjct: 401 V-TWNAMIGAYAQHSHEQQAFELFLLMRLDGE-EPSYITFMSVLSACANAGLPEEAHSYF 458

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
              +    G  P   HYGC+V+ LG+AGR+ +A   I+ MPFEP      S L  CR H 
Sbjct: 459 -VCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHG 517

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           ++  G+F  +  + I+PE +  YV L+ ++A AG +++ +R+R+LM ++ + K+ GRS I
Sbjct: 518 DMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSII 577

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
           +L   ++ F A D+S+P  +E+  ++K+L  + K AGY PDM+ V +DV+  QKE +L  
Sbjct: 578 KLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFA 637

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSE+LA+ FG+I T +G P+R++KNLR+C DCH   K  SK+  R++ +RD NRFHH   
Sbjct: 638 HSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKN 697

Query: 626 GTCSCGDYW 634
           G+CSC D+W
Sbjct: 698 GSCSCKDFW 706



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 204/390 (52%), Gaps = 12/390 (3%)

Query: 29  NPQNLKTLCSN----GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84
           +P+ L TL S     GQ+  A I+      +   +E   ++ +C     L  G+R+H  +
Sbjct: 2   HPRRLSTLLSKRQQLGQIAAA-IDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLI 60

Query: 85  IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144
            +      VY+   L++ Y KC  L +AR +F+    +NV SWT +I+  +Q   S EAL
Sbjct: 61  RRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEAL 120

Query: 145 NLFIRMLRSDTEPNEFTFATVLTSC-AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203
            LF  ML+   +P+  +F   + +C AG      G+ +H+L+ +  F+  +   +SL+ M
Sbjct: 121 ALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSM 180

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y+K G + E+   FE + E + VS  A+I+ +A+     EA+   +K+ +EG+ +  VTY
Sbjct: 181 YSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTY 240

Query: 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323
            ++++A    + L   + +H  +LR      VV  N +++MY KCG L  +  +F +MS+
Sbjct: 241 ITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSMSQ 298

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
             VI+WN M+  YS+HG   E +  + LM+EE  V PD  TY++V+  C+  G  + G  
Sbjct: 299 PDVIAWNTMIAAYSQHGHTSEALRFYELMQEEG-VVPDDYTYVSVIDACATLGDMEVGKQ 357

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
           V   + D    F+   E    +V+M G+ G
Sbjct: 358 VHRRLGD--RAFQV-TELANSLVNMYGKCG 384


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 328/525 (62%), Gaps = 5/525 (0%)

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQ-KAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSC 169
           ARK+F +++  N+ SW +MI   SQ +  S E + LF +M+R     PN FT A VL +C
Sbjct: 43  ARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKAC 102

Query: 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 229
           +     E G+Q+H+ ++KS F S  +V ++L++ YAK   I  A  VF+ + +R++V+ +
Sbjct: 103 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 162

Query: 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289
            +ISGYA++GL  EA+ LFR +Q  G++ + VT  SV++A +   AL  GK VH+++ + 
Sbjct: 163 TMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQ 222

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
            I + + L  +L++MY+KCG +  ++ VFD M  +   +W++M+VG + +G+  + +E F
Sbjct: 223 LIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEF 282

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M EE KVKP+ VT++ VLS C+H G+   G   +  +++   G  P +E YGC+VD+L
Sbjct: 283 FRM-EEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF--GIVPSMELYGCMVDLL 339

Query: 410 GRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV 469
            RA  V +A   ++ MP  P   I  +LL  C+   N+D  E V QRL+E+EP NA NY+
Sbjct: 340 CRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYI 399

Query: 470 ILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSA 529
           +LSNLYAS  +WE +++VR+ MK   +   PG S IE+D ++H F   D SHP   E+  
Sbjct: 400 LLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVRE 459

Query: 530 KVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIK 589
            ++ +S +    G+ P +S VL++V +E+KE  L  HSE+LA+ +GL+ T     IR++K
Sbjct: 460 ILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVK 519

Query: 590 NLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NLR+C DCH   K +S  Y R++ +RD+ RFH  V G+CSC D+W
Sbjct: 520 NLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 160/277 (57%), Gaps = 3/277 (1%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     L  GQ+VHA+++K+ +    ++ T L+ FY KCE +  A K+FDE+ +RN
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+W+ MIS Y++     EAL LF  M ++   P+E T  +V+++CA +   + GK +H+
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I K   E+ + + ++L++MYAK G I  A+ VF+ +P +D  + +++I G A  GL E+
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E F +++   +  N+VT+  VL+A +    +  G++  S +L F I   + L   ++D
Sbjct: 278 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVD 337

Query: 304 MYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSK 338
           +  +   +  +  + + M  S   VI W  +LVG  K
Sbjct: 338 LLCRASLVEDACTLVETMPISPNPVI-WRTLLVGCKK 373



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 106/212 (50%), Gaps = 3/212 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC     L  G+ VHA++ K      + L T L+  Y KC C+  A+++FD M  +
Sbjct: 198 SVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK 257

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +  +W++MI   +    + +AL  F RM  +  +PN  TF  VL++CA +     G++  
Sbjct: 258 DTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYW 317

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--ERDVVSCTAIISGYAQLGL 240
           S +++      + +   ++D+  +A  + +A  + E +P     V+  T ++       L
Sbjct: 318 SSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNL 377

Query: 241 DEEAIELFRKLQVEGM-ISNYVTYASVLTALS 271
           D+  +   R L++E     NY+  +++  ++S
Sbjct: 378 DKSEVVAQRLLELEPHNAENYILLSNLYASMS 409



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 44/256 (17%)

Query: 280 KQVHSHVLRFEIP----SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +Q+H+ +L   +P    S+ + +       S  G + Y+R++F  +    + SWN+M+ G
Sbjct: 5   RQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRG 64

Query: 336 YSK-HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
            S+     +E V LF  M       P++ T   VL  CS     + G  V   ++    G
Sbjct: 65  CSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFG 124

Query: 395 FEPEIE-----------------------------HYGCVVDMLGRAGRVGEALEFIKNM 425
             P +E                              +  ++    R G V EAL   ++M
Sbjct: 125 SSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDM 184

Query: 426 P---FEPTAAILGSLLGACRVHYNVDIGEFV----GQRLMEIEPENAGNYVILSNLYASA 478
                 P    + S++ AC     +D G++V     ++L+E + E +     L N+YA  
Sbjct: 185 QKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELS---TALVNMYAKC 241

Query: 479 GRWEDVTRVRELMKEK 494
           G  E    V + M  K
Sbjct: 242 GCIERAKEVFDAMPVK 257


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 335/593 (56%), Gaps = 38/593 (6%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDEMRERNVVSWTAMISAYS 135
           +++ A MIKT       L T+ +          L  A+++F+ +   N   W A+I AYS
Sbjct: 5   KQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYS 64

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                  A   + +ML S    N +TF  +L +C          Q+H L+IK  F S ++
Sbjct: 65  NSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVF 124

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERD------------------------------- 224
             ++LL +YA  G IH AR +F+ +PERD                               
Sbjct: 125 ALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKN 184

Query: 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           VVS T++ISG  + G   EA+ L  ++Q  G   + V  AS+LTA + L AL  G+ +H 
Sbjct: 185 VVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHF 244

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMG 342
           +VL   +    V+  +L++MY KCG +  +  VF  +  +++ V  W AM+ G++ HG G
Sbjct: 245 YVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRG 304

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E +E FN MR E  ++P+S+T+ AVL  CS+GG+ + G  +F  +  C     P IEHY
Sbjct: 305 VEALEWFNRMRREG-IRPNSITFTAVLRACSYGGLVEEGKELFKSM-KCFYNVNPSIEHY 362

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
           GC+VD+LGR+GR+ EA E IK MP +P+A I G+LL AC +H +  +G  VG  L+E++ 
Sbjct: 363 GCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDS 422

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           +++G Y+ L+ + A+ G+W++   VR  MK   V   PG+S + L+ I+H F A  + HP
Sbjct: 423 DHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHP 482

Query: 523 MREELSAKVKQLSVKFKE-AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
             E++  K+KQ++ + ++  GY P    +L D++ E+KE  +  HSEKLA+ FGLI T  
Sbjct: 483 QMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKP 542

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           G  IRVIKNLRIC DCH  AK VS++Y R++ +RD+ RFHH  +G+CSC DYW
Sbjct: 543 GTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 35/305 (11%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL AC N   +    +VH  +IK  +   V+    L+  Y  C  +  AR++FD + ER+
Sbjct: 94  LLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERD 153

Query: 124 VVSWTAMISAY-------------------------------SQKAHSFEALNLFIRMLR 152
            VSW  MI  Y                                +   S EAL+L   M  
Sbjct: 154 AVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQN 213

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           +  E +    A++LT+CA     + G+ +H  ++ +  +    +G +L++MY K G + E
Sbjct: 214 AGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEE 273

Query: 213 ARGVFECLP--ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
           A  VF  L   ++DV   TA+I G+A  G   EA+E F +++ EG+  N +T+ +VL A 
Sbjct: 274 ALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRAC 333

Query: 271 SGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVIS 328
           S    +  GK++   +  F  +   +     ++D+  + G L  ++ +   M  + + + 
Sbjct: 334 SYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVI 393

Query: 329 WNAML 333
           W A+L
Sbjct: 394 WGALL 398



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 33  LKTLCSNGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           +  L   GQ  +AL    EM   G E+      +LL AC N   L  G+ +H +++    
Sbjct: 192 ISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGV 251

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLF 147
                +   L+  Y KC  + +A  +F +++  +++V  WTAMI  ++      EAL  F
Sbjct: 252 DVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWF 311

Query: 148 IRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI-HSLIIKSNFESHIYVGSSLLDMYAK 206
            RM R    PN  TF  VL +C+     E GK++  S+    N    I     ++D+  +
Sbjct: 312 NRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGR 371

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISG 234
           +GR+ EA+ + + +P +     +A+I G
Sbjct: 372 SGRLDEAKELIKKMPMKP----SAVIWG 395


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/498 (39%), Positives = 301/498 (60%), Gaps = 2/498 (0%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L  ARK+FDEM ERNV +W AM++  +      E+L  F+ M R    P+EF   +V   
Sbjct: 123 LGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRC 182

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
           CAG      G+Q+H+ +++S  +  + VGSSL  MY + G + E   V   LP   +VSC
Sbjct: 183 CAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSC 242

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
             II+G  Q G  E A+E F  ++  G+ ++ VT+ S +++ S LAAL  G+Q+H  V++
Sbjct: 243 NTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMK 302

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +   V +   L+ MYS+CG L  S RVF           +AM+  Y  HG G++ +EL
Sbjct: 303 AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M      +P  VT+LA+L  CSH G+++ G+  F E++    G +P ++HY CVVD+
Sbjct: 363 FKQMMN-GGAEPSDVTFLALLYACSHSGLKEEGMDCF-ELMTKTYGMQPSVKHYTCVVDL 420

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           LGR+G + EA   I +MP  P   I  +LL AC+   N D+ E + +R++E++P ++ +Y
Sbjct: 421 LGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASY 480

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSN+ A++ RW DV+ VR+ M++  V K+PG SW+EL   +H F   D SHP ++E+ 
Sbjct: 481 VLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEID 540

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
             ++++  K ++ GY PDMS VL+D+++E+KE  L  HSEKLA+ F  +  PEG PIRV+
Sbjct: 541 ECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVM 600

Query: 589 KNLRICVDCHNFAKFVSK 606
           KNLR+C DCH   K +S+
Sbjct: 601 KNLRVCDDCHLAIKLMSQ 618



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 34/271 (12%)

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS----------- 227
           +Q+H+    S   +  +  + L+  YA  G +  AR +FE +P R+V+S           
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 228 --------------------CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267
                                 A+++G   LG DEE++  F  ++ EGM  +     SV 
Sbjct: 121 GDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVF 180

Query: 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
              +GL  +  G+QVH++V+R  +   + + +SL  MY +CG L     V   +   +++
Sbjct: 181 RCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIV 240

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
           S N ++ G +++G     +E F +MR    V  D VT+++ +S CS      +G  +  +
Sbjct: 241 SCNTIIAGRTQNGDSEGALEYFCMMRSVG-VAADVVTFVSAISSCSDLAALAQGQQIHGQ 299

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           ++  K G +  +    C+V M  R G +G++
Sbjct: 300 VM--KAGVDKVVPVMTCLVHMYSRCGCLGDS 328



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++   C   R +  G++VHA+++++     + + + L   Y +C CL +   +   +   
Sbjct: 178 SVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSL 237

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VS   +I+  +Q   S  AL  F  M       +  TF + ++SC+       G+QIH
Sbjct: 238 SIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIH 297

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             ++K+  +  + V + L+ MY++ G + ++  VF      D    +A+IS Y   G  +
Sbjct: 298 GQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 357

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALS 271
           +AIELF+++   G   + VT+ ++L A S
Sbjct: 358 KAIELFKQMMNGGAEPSDVTFLALLYACS 386



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M ++G+      + + +++C +   L  GQ++H  ++K      V + T L+  Y++C C
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L D+ ++F      +    +AMISAY    H  +A+ LF +M+    EP++ TF  +L +
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 169 CAGAFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           C+ +   E G     L+ K+   +  +   + ++D+  ++G + EA  +   +P
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP 438


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 357/622 (57%), Gaps = 55/622 (8%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKT--CYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           + +LL  C     LR GQ++HA  I T     P  +LR  L+  Y  C   S ARK+FDE
Sbjct: 23  FRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDE 82

Query: 119 MRE--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFG 174
           + +  ++ V +TA+I    +    FE+L LFI+M + D   +       L +CA  G   
Sbjct: 83  IPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGD 138

Query: 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE-----------C---- 219
            ++G Q+H  ++K  F     V ++L+++Y K G + EAR +FE           C    
Sbjct: 139 TKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEG 198

Query: 220 ----------------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE-GMISNYVT 262
                           +PER+ V+ T +I GY   G  +EA  L +++    G   ++VT
Sbjct: 199 LVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVT 258

Query: 263 YASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
             SVL+A S    +  G+ VH + ++   +   V++  SL+DMY+KCG +  +  VF +M
Sbjct: 259 LCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSM 318

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
            +R V++WNAML G + HGMG+  V++F  M EE  VKPD VT++A+LS CSH G+ ++G
Sbjct: 319 LKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE--VKPDGVTFMALLSACSHSGLVEKG 376

Query: 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
              FH++       +PEIEHY C+V +LGRAGR+ EA   +KNM   P   +LGSL+G+C
Sbjct: 377 WDYFHDLEPVYR-IKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSC 435

Query: 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501
             H  + +GE + + L+E++P N   +++LSN+YA +G+ E    +R+++K++ + K PG
Sbjct: 436 YAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPG 495

Query: 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC-VLY------DV 554
            S I +D  LH F A D+SH    E+  K+ ++  + + AGYVP+ SC VL+      D 
Sbjct: 496 MSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDC 555

Query: 555 DE--EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
            E  E+ E+VL  HSEKLAL FGL+ TP G+P+ + KNLRIC DCH+  K  SKVY R++
Sbjct: 556 SESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREI 615

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RD+ RFH    G+CSC DYW
Sbjct: 616 VVRDRYRFHSFKHGSCSCSDYW 637



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 9/226 (3%)

Query: 53  GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC-YRPPVYLRTRLIVFYNKCECLSD 111
           G  + F    ++L+AC     +  G+ VH + +K       V + T L+  Y KC  ++ 
Sbjct: 251 GFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINA 310

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F  M +RNVV+W AM+   +       A+++F  M+  + +P+  TF  +L++C+ 
Sbjct: 311 ALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSH 369

Query: 172 AFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL--PERDVVSC 228
           +   E G    H L      +  I   + ++ +  +AGR+ EA  + + +  P  +VV  
Sbjct: 370 SGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLG 429

Query: 229 TAIISGYA--QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           + I S YA  +L L E+ +     L+++ + + Y    S + ALSG
Sbjct: 430 SLIGSCYAHGRLQLGEKIMRDL--LEMDPLNTEYHIVLSNMYALSG 473


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/562 (39%), Positives = 338/562 (60%), Gaps = 9/562 (1%)

Query: 77  GQRVHAH-MIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           GQR H   ++       V++ + L+  Y K   + DAR + D++  ++VV +TA+I  YS
Sbjct: 195 GQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYS 254

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
                 E+L +F  M +   E NE+T ++VL  C        G+ IH LI+K+  ES + 
Sbjct: 255 HHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVA 314

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
             +SLL MY + G + ++  VF+     + V+ T++I G  Q G +E A+  FR++    
Sbjct: 315 SQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSS 374

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRF--EIPSYVVLQNSLIDMYSKCGSLTY 313
           +  N  T +SVL A S LA L  GKQ+H+ V++F  +I  YV    +LID Y KCGS   
Sbjct: 375 ITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYV--GAALIDFYGKCGSTEI 432

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R VF+ + E  V+S N+M+  Y+++G G E ++LF+ M++   ++P++VT+L VLS C+
Sbjct: 433 ARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTG-LEPNNVTWLGVLSACN 491

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           + G+ + G  +F    +  +  E   +HY C+VD+LGRAGR+ EA E + N        I
Sbjct: 492 NAGLLEEGCHIFSSARNSGN-IELTKDHYACMVDLLGRAGRLKEA-EMLINQVNISDVVI 549

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
             +LL ACR+H +V++ + V  R++++ PE+ G +V+LSNLYAS G W  V  ++  M+E
Sbjct: 550 WRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMRE 609

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
             + K+P  SW+++++ +HTF A D SHP   ++  K+++L  K KE GYVPD   VL D
Sbjct: 610 MRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQD 669

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTP-EGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           +DEE+K + L  HSEKLA+ F L  +  +   IR++KNLR+C DCH + KFVSK+ GR +
Sbjct: 670 LDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDI 729

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
             RD  RFHH   G CSCGDYW
Sbjct: 730 IARDVKRFHHFRNGLCSCGDYW 751



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 200/356 (56%), Gaps = 10/356 (2%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y +L+  C+  +++    ++ +H +K  +     L  +LI  Y KC  +  ARK+FDE+ 
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++V+W +MI++Y +   S EA++++ RM+     P+EFTF++V  + +       G++
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 181 IH--SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
            H  S+++     S+++VGS+L+DMYAK G++ +AR V + +  +DVV  TA+I GY+  
Sbjct: 198 AHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHH 256

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G D E++++FR +  +G+ +N  T +SVL     L  L  G+ +H  +++  + S V  Q
Sbjct: 257 GEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQ 316

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE-ENK 357
            SL+ MY +CG +  S +VF        ++W +++VG  ++  GRE + L    +   + 
Sbjct: 317 TSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQN--GREEIALLKFRQMLRSS 374

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
           + P+S T  +VL  CS   M ++G  + H IV  K G + +      ++D  G+ G
Sbjct: 375 ITPNSFTLSSVLRACSSLAMLEQGKQI-HAIV-MKFGLDIDKYVGAALIDFYGKCG 428



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 9/307 (2%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+  +    M   G+E       ++L  C N   L  G+ +H  ++K      V  +T 
Sbjct: 259 DGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTS 318

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +C  + D+ K+F +    N V+WT++I    Q      AL  F +MLRS   PN
Sbjct: 319 LLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPN 378

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            FT ++VL +C+     E GKQIH++++K   +   YVG++L+D Y K G    AR VF 
Sbjct: 379 SFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFN 438

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            L E DVVS  ++I  YAQ G   EA++LF  ++  G+  N VT+  VL+A +    L  
Sbjct: 439 GLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEE 498

Query: 279 GKQVHSHV-----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
           G  + S       +      Y      ++D+  + G L  +  + + ++   V+ W  +L
Sbjct: 499 GCHIFSSARNSGNIELTKDHYAC----MVDLLGRAGRLKEAEMLINQVNISDVVIWRTLL 554

Query: 334 VGYSKHG 340
                HG
Sbjct: 555 SACRIHG 561



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 161/311 (51%), Gaps = 11/311 (3%)

Query: 131 ISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
           +SA+ +    F   N+ IR L  ++T  +   +++++  C G        +I S  +K  
Sbjct: 48  VSAFFKSLSHFSQSNIKIRKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRG 107

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F  H  +G+ L+D Y K G +  AR VF+ +P R +V+  ++I+ Y + G  +EAI++++
Sbjct: 108 F--HHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQ 165

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSKC 308
           ++  +G++ +  T++SV  A S L  +  G++ H   +   +  S V + ++L+DMY+K 
Sbjct: 166 RMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKF 225

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  +R V D +  + V+ + A++VGYS HG   E +++F  M ++  ++ +  T  +V
Sbjct: 226 GKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG-IEANEYTLSSV 284

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL----EFIKN 424
           L  C  G +ED         +  K G E  +     ++ M  R G V ++L    +FI  
Sbjct: 285 LVCC--GNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINP 342

Query: 425 MPFEPTAAILG 435
                T+ I+G
Sbjct: 343 NQVTWTSVIVG 353


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 334/554 (60%), Gaps = 3/554 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L A V       GQ++H   + T +     +  +++ FY+K + + + R +F+EM 
Sbjct: 247 FSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP 306

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E + VS+  +IS+YSQ     E+LNLF  M     +   F FAT+L+  A     ++G+Q
Sbjct: 307 ELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQ 366

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   I +  +S ++VG+SL+DMYAK     EA  +F+ L +R  VS TA+ISGY Q GL
Sbjct: 367 VHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGL 426

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
               ++LF K++   + ++  T+A+VL A +G A+L  GKQ+H+ ++R      V   + 
Sbjct: 427 HGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSG 486

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           L+DMY+KCGS+  + +VF+ M +R  +SWNA++  Y+ +G G   +  F  M +   ++P
Sbjct: 487 LVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSG-LQP 545

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           DSV+ L VL  CSH G  ++G   F  +     G  P+ +HY C++D+LGR GR  EA +
Sbjct: 546 DSVSILGVLIACSHCGFVEQGTEFFQAMSPIY-GITPKKKHYACMLDLLGRNGRFAEAEK 604

Query: 421 FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAG 479
            +  MPFEP   +  S+L ACR++ N  + E   ++L  +E   +A  YV +SN+YA+AG
Sbjct: 605 LMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAG 664

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +WE+V  V++ M+E+ + K P  SW+E++  +H F ++D++HP  +E+  K+ +L+ + +
Sbjct: 665 KWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIE 724

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GY PD S V+ D+DE+ K + L  HSE+LA+ F LI TPEG PI V+KNLR C DCH 
Sbjct: 725 REGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHA 784

Query: 600 FAKFVSKVYGRKVS 613
             K +SK+  R ++
Sbjct: 785 AIKLISKIVKRVIT 798



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC--LSDARKMFDE 118
           + TLL  C +        +VHA  +K  +   ++L    ++  + CE   L  A  +F+E
Sbjct: 144 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEE 203

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178
           + +++ V++  +I+ Y +     EA++LF++M +S  +P++FTF+ VL +  G   F LG
Sbjct: 204 ILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALG 263

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           +Q+H L + + F     VG+ +L  Y+K  R+ E R +F  +PE D VS   +IS Y+Q 
Sbjct: 264 QQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQA 323

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
              EE++ LFR++Q  G       +A++L+  + L++L  G+QVH   +     S + + 
Sbjct: 324 EQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVG 383

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSL+DMY+KC     +  +F ++S+R+ +SW A++ GY + G+    ++LF  MR  N +
Sbjct: 384 NSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGAN-L 442

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLA-VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
           + D  T+  VL   +  G     L    H  +      E      G +VDM  + G + +
Sbjct: 443 RADQSTFATVLKASA--GFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKD 499

Query: 418 ALEFIKNMP 426
           A++  + MP
Sbjct: 500 AVQVFEEMP 508



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 151/292 (51%), Gaps = 10/292 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +G + R   + T+L+   N  +L+ G++VH   I       +++   L+  Y KCE
Sbjct: 335 EMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCE 394

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
              +A  +F  + +R+ VSWTA+IS Y QK      L LF +M  ++   ++ TFATVL 
Sbjct: 395 MFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLK 454

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + AG     LGKQ+H+ II+S    +++ GS L+DMYAK G I +A  VFE +P+R+ VS
Sbjct: 455 ASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS 514

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+IS YA  G  E AI  F K+   G+  + V+   VL A S    +  G +    + 
Sbjct: 515 WNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAM- 573

Query: 288 RFEIPSYVVLQNS-----LIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAML 333
               P Y +         ++D+  + G    + ++ D M  E   I W+++L
Sbjct: 574 ---SPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 622



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 2/257 (0%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y K   LS AR +FD M +R VV+WT ++  Y+   H  EA  LF +M RS T P+
Sbjct: 81  MISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPD 140

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY--VGSSLLDMYAKAGRIHEARGV 216
             TF T+L  C  A       Q+H+  +K  F+++++  V + LL  Y +  R+  A  +
Sbjct: 141 YVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVL 200

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           FE + ++D V+   +I+GY + GL  EAI LF K++  G   +  T++ VL A+ GL   
Sbjct: 201 FEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDF 260

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G+Q+H   +         + N ++  YSK   +  +R +F+ M E   +S+N ++  Y
Sbjct: 261 ALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSY 320

Query: 337 SKHGMGREVVELFNLMR 353
           S+     E + LF  M+
Sbjct: 321 SQAEQYEESLNLFREMQ 337



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 9/263 (3%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G   K   +M    L      + T+L A     +L  G+++HA +I++     V+  + 
Sbjct: 427 HGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSG 486

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y KC  + DA ++F+EM +RN VSW A+ISAY+       A+  F +M++S  +P+
Sbjct: 487 LVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPD 546

Query: 159 EFTFATVLTSCAGAFGFELGK---QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
             +   VL +C+     E G    Q  S I     +   Y  + +LD+  + GR  EA  
Sbjct: 547 SVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHY--ACMLDLLGRNGRFAEAEK 604

Query: 216 VFECLP-ERDVVSCTAIISG---YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271
           + + +P E D +  +++++    Y    L E A E    ++     + YV+ +++  A  
Sbjct: 605 LMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAG 664

Query: 272 GLAALGHGKQVHSHVLRFEIPSY 294
               + H K+        ++P+Y
Sbjct: 665 KWENVRHVKKAMRERGIKKVPAY 687



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++++  Y K G +  AR +F+ +P+R VV+ T ++  YA     +EA +LFR++     +
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL 138

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSR 315
            +YVT+ ++L   +         QVH+  ++  F+   ++ + N L+  Y +   L  + 
Sbjct: 139 PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLAC 198

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
            +F+ + ++  +++N ++ GY K G+  E + LF  MR+    KP   T+  VL      
Sbjct: 199 VLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGH-KPSDFTFSGVLKAVV-- 255

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           G+ D  L      +    GF  +      ++    +  RV E       MP
Sbjct: 256 GLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP 306



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 290 EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
           E+P    V  N++I  Y K G L+ +R +FD M +RTV++W  ++  Y+ +    E  +L
Sbjct: 69  EMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKL 128

Query: 349 FNLMREENKVKPDSVTYLAVLSGCS 373
           F  M     + PD VT+  +L GC+
Sbjct: 129 FRQMCRSCTL-PDYVTFTTLLPGCN 152


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 321/539 (59%), Gaps = 45/539 (8%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T ++  Y K + L  AR+ FD M ER+VVSW AM+S Y+Q   + EAL LF  ML     
Sbjct: 109 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAY 166

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            N  T+                                   ++++  Y + G +  AR +
Sbjct: 167 RNSVTW-----------------------------------NAMISAYMRVGDLDSARKL 191

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAA 275
           F  +P R+VV+  ++I+GYAQ G    AIELF+++   + +  + VT  SV++A   L A
Sbjct: 192 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 251

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           L  G  V   +   +I   +   N++I MYS+CGS+  ++RVF  M+ R V+S+N ++ G
Sbjct: 252 LELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISG 311

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           ++ HG G E + L + M+E   ++PD VT++ VL+ CSH G+ + G  VF  I D     
Sbjct: 312 FAAHGHGVEAINLMSTMKE-GGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD----- 365

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
            P I+HY C+VD+LGR G + +A   ++ MP EP A + GSLL A R+H  V++GE    
Sbjct: 366 -PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAAN 424

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           +L E+EP+N+GN+++LSN+YASAGRW+DV R+RE MK+  V K  G SW+E    LH F 
Sbjct: 425 KLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFI 484

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
            +DRSH   +++   + +L  K +EAGY+ D SCVL DV+EE+KE+++  HSEKLA+ + 
Sbjct: 485 VADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYA 544

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ +  GA IRV+KNLR+C DCH   K +SK+ GR + +RD NRFH   +G CSC DYW
Sbjct: 545 LLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC +   L  G  V   + +   +  +     +I  Y++C  + DA+++F EM  R
Sbjct: 241 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 300

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +VVS+  +IS ++   H  EA+NL   M     EP+  TF  VLT+C+ A   E G+++ 
Sbjct: 301 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 360

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             I     + +    + ++D+  + G + +A+   E +P
Sbjct: 361 ESIKDPAIDHY----ACMVDLLGRVGELEDAKRTMERMP 395


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 351/576 (60%), Gaps = 7/576 (1%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            + L++C +   +  GQ++H   IK      V +   L+  Y + +C+ + +K+F  M E 
Sbjct: 461  STLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEY 520

Query: 123  NVVSWTAMISAY-SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            + VSW + I A  + +A   +A+  F+ M+++  +PN  TF  +L++ +     ELG+QI
Sbjct: 521  DQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQI 580

Query: 182  HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGL 240
            H+LI+K +      + ++LL  Y K  ++ +   +F  + ER D VS  A+ISGY   G+
Sbjct: 581  HALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGI 640

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +A+ L   +  +G   +  T A+VL+A + +A L  G +VH+  +R  + + VV+ ++
Sbjct: 641  LHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSA 700

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            L+DMY+KCG + Y+ R F+ M  R + SWN+M+ GY++HG G + ++LF  M++  ++ P
Sbjct: 701  LVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQL-P 759

Query: 361  DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
            D VT++ VLS CSH G+ D G   F  + +  +   P IEH+ C+VD+LGRAG V +  E
Sbjct: 760  DHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYE-LAPRIEHFSCMVDLLGRAGDVKKLEE 818

Query: 421  FIKNMPFEPTAAILGSLLGAC-RVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            FIK MP  P A I  ++LGAC R +  N ++G    + L+E+EP NA NYV+LSN++A+ 
Sbjct: 819  FIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAG 878

Query: 479  GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
            G+WEDV   R  M+   V K+ G SW+ +   +H F A D++HP +E++  K+K++  K 
Sbjct: 879  GKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKM 938

Query: 539  KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
            ++ GYVP+    LYD++ E KE++L  HSEKLA+ F L    E  PIR+IKNLR+C DCH
Sbjct: 939  RDLGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSE-LPIRIIKNLRVCGDCH 997

Query: 599  NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
               K++S +  R++ LRD NRFHH   G CSC DYW
Sbjct: 998  TAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 197/393 (50%), Gaps = 11/393 (2%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTL----RGGQRVHAHMIKTCYRPP-VYL 95
           +  K   EM  L +E+    Y  LL+A      L    R GQ VHA++I+       + +
Sbjct: 334 EAAKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILI 392

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
              L+  Y KC  + +AR +F  M  ++ VSW ++IS         EA+  F  M R+  
Sbjct: 393 GNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGM 452

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
            P++F+  + L+SCA      LG+QIH   IK   +  + V ++LL +YA+   + E + 
Sbjct: 453 VPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQK 512

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDE-EAIELFRKLQVEGMISNYVTYASVLTALSGLA 274
           VF  +PE D VS  + I   A       +AI+ F ++   G   N VT+ ++L+A+S L+
Sbjct: 513 VFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLS 572

Query: 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAML 333
            L  G+Q+H+ +L+  +     ++N+L+  Y KC  +     +F  MSE R  +SWNAM+
Sbjct: 573 LLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMI 632

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            GY  +G+  + + L  LM ++ + + D  T   VLS C+     +RG+ V    +  + 
Sbjct: 633 SGYIHNGILHKAMGLVWLMMQKGQ-RLDDFTLATVLSACASVATLERGMEVHACAI--RA 689

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             E E+     +VDM  + G++  A  F + MP
Sbjct: 690 CLEAEVVVGSALVDMYAKCGKIDYASRFFELMP 722



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 163/322 (50%), Gaps = 17/322 (5%)

Query: 60  EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           +Y+   ++C    T+    ++H  + KT     V+    L+  + +   L  A+K+FDEM
Sbjct: 45  DYNRYRDSC----TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEM 100

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFEL 177
            ++N+VSW+ ++S Y+Q     EA  LF  ++ +   PN +   + L +C   G    +L
Sbjct: 101 PQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKL 160

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAK-AGRIHEARGVFECLPERDVVSCTAIISGYA 236
           G +IH LI KS + S + + + L+ MY+  +  I +AR VFE +  +   S  +IIS Y 
Sbjct: 161 GMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYC 220

Query: 237 QLGLDEEAIELFRKLQVEGM----ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292
           + G    A +LF  +Q E        N  T+ S++T    L   G    +   + R E  
Sbjct: 221 RRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGL-TLLEQMLARIEKS 279

Query: 293 SYV---VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
           S+V    + ++L+  +++ G +  ++ +F+ M +R  ++ N ++VG ++   G E  ++F
Sbjct: 280 SFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIF 339

Query: 350 NLMREENKVKPDSVTYLAVLSG 371
             M++   V+ ++ +Y  +LS 
Sbjct: 340 KEMKD--LVEINASSYAVLLSA 359



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 156/305 (51%), Gaps = 13/305 (4%)

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           E   Q+H  I K+   S ++  ++L++++ +AG +  A+ +F+ +P++++VS + ++SGY
Sbjct: 56  EDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGY 115

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA--LGHGKQVHSHVLRFEIPS 293
           AQ G+ +EA  LFR +   G++ N+    S L A   L    L  G ++H  + +    S
Sbjct: 116 AQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYAS 175

Query: 294 YVVLQNSLIDMYSKC-GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352
            +VL N L+ MYS C  S+  +RRVF+ +  +T  SWN+++  Y + G      +LF+ M
Sbjct: 176 DMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSM 235

Query: 353 REEN---KVKPDSVTYLAVLS-GCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVV 406
           + E      +P+  T+ ++++  CS   + D GL +  +++    K  F  ++     +V
Sbjct: 236 QREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALV 292

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466
               R G +  A    + M       + G ++G  R H   +  + + + + ++   NA 
Sbjct: 293 SGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK-IFKEMKDLVEINAS 351

Query: 467 NYVIL 471
           +Y +L
Sbjct: 352 SYAVL 356



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 39  NGQLTKALIEMATLGLEM----RFEEYD--TLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           NG L KA   M  + L M    R +++   T+L+AC +  TL  G  VHA  I+ C    
Sbjct: 638 NGILHKA---MGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAE 694

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V + + L+  Y KC  +  A + F+ M  RN+ SW +MIS Y++  H  +AL LF +M +
Sbjct: 695 VVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQ 754

Query: 153 SDTEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
               P+  TF  VL++C+       GFE  K +  +   +    H    S ++D+  +AG
Sbjct: 755 HGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHF---SCMVDLLGRAG 811

Query: 209 RIHEARGVFECLP 221
            + +     + +P
Sbjct: 812 DVKKLEEFIKTMP 824


>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Glycine max]
          Length = 622

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/627 (33%), Positives = 363/627 (57%), Gaps = 19/627 (3%)

Query: 9   RAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLG-LEMRFEEYDTLLNA 67
           ++ S++  T     + ++  + +NL     N ++   ++++   G  E+    Y+TLL  
Sbjct: 14  QSLSTIQSTFCDSDISAYVIDNKNLLRPSLNSKIGLHVLDLIDCGSFELDLTLYNTLLKR 73

Query: 68  CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSW 127
           C     L+ G+ VH HM  + ++  + ++  ++  Y +C  L D + +F+E  ++++V+W
Sbjct: 74  CTQLGKLKEGKLVHFHMFNSKFKDDLVIQNFVLFMYARCGNLKDTQHVFNEKLQKDMVTW 133

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           T+MIS Y+Q   + + L LF R+L   T+ N F  ++++ +    +G             
Sbjct: 134 TSMISGYAQNERAKDTLVLFPRILSEGTKLNXFILSSLIHASCWMYGCH----------- 182

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
               S+++VGSSL++M A+ G + E   VF+    ++ VS  A+I GYA+ G  EEA+ L
Sbjct: 183 ----SNVFVGSSLVNMXARCGYLGEEXLVFDNSWCKNEVSWNALIGGYAKKGEGEEALAL 238

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           + ++Q+E       TY+ +L++   +  L  GK + +H+++      V + N+L+ MY+K
Sbjct: 239 YLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLAHLMKPGQKLVVYVGNTLLHMYAK 298

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            G +    + FD + +  V+S N+ML  Y++HG+G+E ++ F  M     ++P+ +T L 
Sbjct: 299 LGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKEAMQQFEEMISFG-IEPNDITVLF 357

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VLS CSH  + D G   F  +   K   EP++ HY  ++D+LG AG + +A  FI+ MP 
Sbjct: 358 VLSSCSHARLLDEGKHYFGLMR--KYSIEPKVSHYATIIDLLGXAGLLDQAESFIEEMPI 415

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
           EP  AI G+LLG  ++H N  +G +  Q++ E+ P   G + +L N+YASAGRW DV +V
Sbjct: 416 EPIVAIXGALLGDSKMHKNTKMGAYAAQQVFELNPSCRGTHTLLVNMYASAGRWGDVAKV 475

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
            ++MK+  V K+P  S +E++  +H F A+D +HP +E++    ++L+ K KE GYVPD 
Sbjct: 476 IKIMKDSGVKKEPTCSXVEIENSVHVFVANDAAHPQKEKIHKMWEKLNQKIKEIGYVPDT 535

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           S VL  VD+++KE     H+EKLALT   + TP  +  R++KN+R+  DCH+   +V+ V
Sbjct: 536 SHVLLFVDQQEKELNFQYHTEKLALTLAFLNTPPRSTTRIMKNIRVSGDCHSSINYVALV 595

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             R++ +RD NRFHH  +G CSCGDYW
Sbjct: 596 VKREIIVRDTNRFHHFRDGFCSCGDYW 622


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 333/570 (58%), Gaps = 42/570 (7%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + ++L AC     +  GQ+VH  + K      +++R  L+  Y K  C   A+K+FDEM 
Sbjct: 130 FTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV 189

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+VVSW  +IS Y       +A  +F  M+    E N  +++T+++             
Sbjct: 190 VRDVVSWNTLISGYCFSGMVDKARMVFDGMM----EKNLVSWSTMISG------------ 233

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
                                  YA+ G + EAR +FE +P R+VVS  A+I+GYAQ   
Sbjct: 234 -----------------------YARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEK 270

Query: 241 DEEAIELFRKLQVEG-MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             +AIELFR++Q EG +  N VT  SVL+A + L AL  GK +H  + R +I   + L N
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           +L DMY+KCG +  ++ VF  M ER VISW+ +++G + +G   E    F  M E+  ++
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG-LE 389

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+ ++++ +L+ C+H G+ D+GL  F +++    G  P+IEHYGCVVD+L RAGR+ +A 
Sbjct: 390 PNDISFMGLLTACTHAGLVDKGLEYF-DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
             I +MP +P   + G+LLG CR++ + + GE V  R++E++  ++G+ V L+N+YAS G
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           R +D    R  M++    K PG SWIE++  ++ F   D SHP    + + +++L  K K
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMK 568

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
            AGY P    V++++DEE+KE  L  HSEKLAL FGLI T EG  IR++KNLR+C DCH+
Sbjct: 569 VAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHD 628

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCS 629
             K +SK+  R++ +RD++RFHH  +G CS
Sbjct: 629 AIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 112/226 (49%), Gaps = 22/226 (9%)

Query: 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           T+ SVL A +GLA +  G++VH  V ++   S + ++NSL+D+Y K G    ++++FD M
Sbjct: 129 TFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM 188

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
             R V+SWN ++ GY   GM  +   +F+ M E+N      V++  ++SG +  G  +  
Sbjct: 189 VVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL-----VSWSTMISGYARVGNLEEA 243

Query: 382 LAVFHEIVDCKDGFEP--EIEHYGCVVDMLGRAGRVGEALEFIKNMPFE----PTAAILG 435
             +F  +        P   +  +  ++    +  +  +A+E  + M  E    P    L 
Sbjct: 244 RQLFENM--------PMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLV 295

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV--ILSNLYASAG 479
           S+L AC     +D+G+++  R +       G ++   L+++YA  G
Sbjct: 296 SVLSACAHLGALDLGKWI-HRFIRRNKIEVGLFLGNALADMYAKCG 340



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 281 QVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRVFDN-MSERTVISWNAMLVGYS 337
           ++ + ++   IPS    ++    I + S  G+L +S  +F++ +S   + ++NA+L  +S
Sbjct: 42  EIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFS 101

Query: 338 KHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396
           +H      +  F N +   N   PD  T+ +VL  C+       G  V H  V  K G E
Sbjct: 102 QHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKV-HCFV-TKYGCE 159

Query: 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
             +     +VD+  + G    A +    M      +    + G C     VD    V   
Sbjct: 160 SNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYC-FSGMVDKARMVFDG 218

Query: 457 LMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           +ME   +N  ++  + + YA  G  E+  ++ E M  + V 
Sbjct: 219 MME---KNLVSWSTMISGYARVGNLEEARQLFENMPMRNVV 256


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/611 (36%), Positives = 350/611 (57%), Gaps = 48/611 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L+++C   ++++  ++ HA +I T          +L+     C  LS A K+FD++ + 
Sbjct: 21  SLIDSC---KSMQQIKQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQP 76

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELGKQ 180
           ++  +  MI A+S   HS     +  R L  D    PN ++F    ++C    G + G+Q
Sbjct: 77  DLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQ 136

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC--------------------- 219
           +    +K   E++++V ++L+ MY K G + E++ VF+                      
Sbjct: 137 VRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGN 196

Query: 220 ----------LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                     + ERDVVS + II+GY Q+G   EA++ F K+   G   N  T  S L A
Sbjct: 197 MSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAA 256

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV-FDNMSERTVIS 328
            S L AL  GK +H+++ + EI     L  S+IDMY+KCG +  + RV F++  ++ V  
Sbjct: 257 CSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWL 316

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           WNAM+ G++ HGM  E + +F  M+ E K+ P+ VT++A+L+ CSHG M + G   F  +
Sbjct: 317 WNAMIGGFAMHGMPNEAINVFEQMKVE-KISPNKVTFIALLNACSHGYMVEEGKLYFRLM 375

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           V       PEIEHYGC+VD+L R+G + EA + I +MP  P  AI G+LL ACR++ +++
Sbjct: 376 VS-DYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDME 434

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKD----PGRSW 504
            G  +G+ +  ++P + G +V+LSN+Y+++GRW +   +RE   +  +++D    PG S 
Sbjct: 435 RGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILRE---KNEISRDRKKIPGCSS 491

Query: 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV-DEEQKEKVL 563
           IEL    H F   D+SHP   E+ + + +++ K K AGYVP++  +L+D+ DEE KE  L
Sbjct: 492 IELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETAL 551

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ FGL+ T  G PIR++KNLR+C DCH   KF+SKVY R + +RD+ R+HH 
Sbjct: 552 SVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHF 611

Query: 624 VEGTCSCGDYW 634
            +G CSC DYW
Sbjct: 612 EDGICSCKDYW 622


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 334/563 (59%), Gaps = 12/563 (2%)

Query: 77  GQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISA 133
           G + H  + K  C   P +++T LI  Y K   + +ARK+F+E     +  V + A++S 
Sbjct: 59  GSQFHGQITKVGCVFEP-FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSG 117

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y   +   +A+ LF +M       N  T   ++ +C      ELG  +H   +K  F+S 
Sbjct: 118 YVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSD 177

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + V +  + MY K G ++ A+ +F+ +P + ++S  A++SGYAQ GL    +EL+R + +
Sbjct: 178 VSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM 237

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
            G+  + VT   VL++ + L A   G +V   +      S   L N+LI+MY++CG+LT 
Sbjct: 238 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTK 297

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           ++ VFD M ERT++SW A++ GY  HG G   V+LF  M     ++PD   ++ VLS CS
Sbjct: 298 AQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG-IEPDGTAFVCVLSACS 356

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAI 433
           H G+ D+GL  F +++      EP  EHY C+VD+LGRAGR+ EA   I++MP +P  A+
Sbjct: 357 HAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 415

Query: 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493
            G+LLGAC++H NV++ E   +R++E+EPEN G YV+LSN+Y++A   + V R+R +MKE
Sbjct: 416 WGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKE 475

Query: 494 KAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYD 553
           K + KDPG S++EL   +H F   DR+H   +E+   +++L     +    P+      +
Sbjct: 476 KKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----N 531

Query: 554 VDEEQKEKVL-LG-HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRK 611
            +E  K+    +G HSEKLA+ FGL+ T  GA + +IKNLRIC DCH F K VSK+  R+
Sbjct: 532 REESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQ 591

Query: 612 VSLRDKNRFHHIVEGTCSCGDYW 634
           +++RD  RFHH   G+CSC DYW
Sbjct: 592 LTVRDATRFHHFRNGSCSCKDYW 614



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 173/350 (49%), Gaps = 8/350 (2%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W   +   +++    +AL+L+ +MLR    PN FTF   L SCA      LG Q H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVF-ECLPERDVVSC-TAIISGYAQLGLDEEA 244
           K       +V + L+ MY K   +  AR VF E    R +  C  A++SGY       +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR++  EG+  N VT   ++ A      L  G  +H   L++   S V + N  I M
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y KCGS+ Y++++FD M  + +ISWNAM+ GY+++G+   V+EL+  M + N V PD VT
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM-DMNGVHPDPVT 246

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
            + VLS C++ G +  G  V  E      GF         +++M  R G + +A      
Sbjct: 247 LVGVLSSCANLGAQSVGHEV--EFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 304

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILS 472
           MP E T     +++G   +H + +I   + + ++   IEP+      +LS
Sbjct: 305 MP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 353



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 164/322 (50%), Gaps = 7/322 (2%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           L+ ACV+   L  G  +H   +K  +   V +    I  Y KC  ++ A+K+FDEM  + 
Sbjct: 149 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 208

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           ++SW AM+S Y+Q   +   L L+  M  +   P+  T   VL+SCA      +G ++  
Sbjct: 209 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEF 268

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            +  S F S+ ++ ++L++MYA+ G + +A+ VF+ +PER +VS TAII GY   G  E 
Sbjct: 269 KMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEI 328

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A++LF+++   G+  +   +  VL+A S       G +    + R +++       + ++
Sbjct: 329 AVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMV 388

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVIS-WNAMLVGYSKHGMGREVVELFNLMREEN-KVKP 360
           D+  + G L  ++ + ++M  +   + W A+L     H    + VEL  L  E   +++P
Sbjct: 389 DLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH----KNVELAELAFERVIELEP 444

Query: 361 DSVTYLAVLSGCSHGGMEDRGL 382
           +++ Y  +LS         +G+
Sbjct: 445 ENIGYYVLLSNIYSNANNSKGV 466


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 324/580 (55%), Gaps = 68/580 (11%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+AC +      G+++H+++IK      + +   L+  Y KC  +  A + F      
Sbjct: 319 SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE 378

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           NVV W  M+ AY Q  +  E+  +F++M      PN++T+ ++L +C      +LG+QIH
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + +IKS F+ ++YV S L+DMYAK G +  ARG+ + L E DVVS TA+I+GY Q  L  
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFA 498

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY-------- 294
           EA++LF++++ +G+ S+ + ++S ++A +G+ AL  G+Q+H+      I  Y        
Sbjct: 499 EALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSY---ISGYSEDLSIGN 555

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            +  N LI +YSKCGS+  ++R F  M E+ V+SWNAM+ GY                  
Sbjct: 556 ALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGY------------------ 597

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
                             S  G     +++F E                     + + G 
Sbjct: 598 ------------------SQHGYGSEAVSLFEE---------------------MKQLGL 618

Query: 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474
           +   + F+  MP EP A I  +LL AC VH N++IGEF  + L+E+EPE++  YV+LSN+
Sbjct: 619 MPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNM 678

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQL 534
           YA +G+W+   R R++MK++ V K+PGRSWIE+   +H F   DR HP+ E++   +  L
Sbjct: 679 YAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDL 738

Query: 535 SVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRIC 594
           + +  E GYV D   +L DV++EQK+     HSEKLA+ FGL+      PIRVIKNLR+C
Sbjct: 739 NERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVC 798

Query: 595 VDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            DCHN+ KFVSK+  R + +RD  RFHH   G CSC DYW
Sbjct: 799 NDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 203/380 (53%), Gaps = 4/380 (1%)

Query: 61  YDTLLNACVNQRT-LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           + ++L AC   +   +  +++HA +I   +     +   LI  Y+K   +  A+ +F+ +
Sbjct: 114 FASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL 173

Query: 120 RERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGK 179
             ++ VSW AMIS  SQ     EA+ LF +M +S   P  + F++VL++C     F+LG+
Sbjct: 174 FLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGE 233

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           Q+H  I+K    S  +V ++L+ +Y++ G +  A  +F  +  RD +S  ++ISG AQ G
Sbjct: 234 QLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRG 293

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             + A++LF K+Q++ M  + VT AS+L+A + + A   GKQ+HS+V++  + S ++++ 
Sbjct: 294 FSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEG 353

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SL+D+Y KC  +  +   F       V+ WN MLV Y + G   E   +F  M+ E  + 
Sbjct: 354 SLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEG-LM 412

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           P+  TY ++L  C+  G  D G  +  +++  K GF+  +     ++DM  + G +  A 
Sbjct: 413 PNQYTYPSILRTCTSLGALDLGEQIHTQVI--KSGFQFNVYVCSVLIDMYAKHGELDTAR 470

Query: 420 EFIKNMPFEPTAAILGSLLG 439
             ++ +  E   +    + G
Sbjct: 471 GILQRLREEDVVSWTAMIAG 490



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 202/374 (54%), Gaps = 4/374 (1%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+    + Y  L   C N  +L   +++HA + K+ +     L +RLI  Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +A K+FD++   NV  W  +IS    K  + + L LF  M+  +  P+E TFA+VL +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 169 CAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           C+G    F++ +QIH+ II   F S   V + L+D+Y+K G +  A+ VFE L  +D VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
             A+ISG +Q G ++EAI LF ++    +I     ++SVL+A + +     G+Q+H  ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           ++ + S   + N+L+ +YS+ G+L  + ++F  M  R  IS+N+++ G ++ G     ++
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF  M + + +KPD VT  ++LS C+  G   +G  +   ++  K G   ++   G ++D
Sbjct: 301 LFEKM-QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI--KMGMSSDLIIEGSLLD 357

Query: 408 MLGRAGRVGEALEF 421
           +  +   +  A E+
Sbjct: 358 LYVKCFDIETAHEY 371



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 45/359 (12%)

Query: 36  LCSNGQLTKALIEMATLGLEMRFE-------EYDTLLNACVNQRTLRGGQRVHAHMIKTC 88
           L + GQL   L E   + L+M+ E        Y ++L  C +   L  G+++H  +IK+ 
Sbjct: 387 LVAYGQLGN-LSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445

Query: 89  YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFI 148
           ++  VY+ + LI  Y K   L  AR +   +RE +VVSWTAMI+ Y+Q     EAL LF 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS-----LLDM 203
            M       +   F++ +++CAG      G+QIH+    S +   + +G++     L+ +
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITL 565

Query: 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY 263
           Y+K G I +A+  F  +PE++VVS  A+I+GY+Q G   EA+ LF +++  G++ N+VT+
Sbjct: 566 YSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 625

Query: 264 A-------------SVLTALSGLAALGHGKQVHSHVLRFE---IPSYVVLQNSLIDMYSK 307
                         ++L+A +    +  G+    H+L  E     +YV+L N    MY+ 
Sbjct: 626 VGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSN----MYAV 681

Query: 308 CGSLTYSRRVFDNMSERTVI-----SW-------NAMLVGYSKHGMGREVVELFNLMRE 354
            G   Y  R    M +R V      SW       +A  VG   H +  ++ E  + + E
Sbjct: 682 SGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNE 740


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 334/595 (56%), Gaps = 3/595 (0%)

Query: 39   NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
            N +  +  I M T G E+      ++L AC   R    G+ VH + +KT       L   
Sbjct: 499  NSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANA 558

Query: 99   LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
            L+  Y+ C       ++F  M ++NVVSWTAMI++Y +     +   L   M+     P+
Sbjct: 559  LLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618

Query: 159  EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             F   + L + AG    + GK +H   I++  E  + V ++L++MY K   + EAR +F+
Sbjct: 619  VFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFD 678

Query: 219  CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             +  +DV+S   +I GY++     E+  LF  + ++    N VT   +L A + +++L  
Sbjct: 679  RVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLER 737

Query: 279  GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            G+++H++ LR          N+L+DMY KCG+L  +R +FD ++++ +ISW  M+ GY  
Sbjct: 738  GREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGM 797

Query: 339  HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            HG G+  + LF  MR    ++PD+ ++ A+L  C H G+   G   F  +   +   EP+
Sbjct: 798  HGFGKHAIALFEQMRGSG-IEPDAASFSAILYACCHSGLAAEGRRFFKAMQK-EYKIEPK 855

Query: 399  IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            ++HY C+VD+L R G + EALEFI++MP EP ++I  SLL  CR+H NV + E V  ++ 
Sbjct: 856  LKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVF 915

Query: 459  EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            ++EPEN G YV+L+N+YA A RWE V +++  +  + + ++ G SWIE+   +H F A +
Sbjct: 916  KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADN 975

Query: 519  RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            R+HP    ++  +  ++ + ++ G+ P     L   D+   ++ L GHS KLA+ FG++ 
Sbjct: 976  RNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLN 1035

Query: 579  TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
             PEG PIRV KN ++C  CH  AKF+SK+  R++ LRD +RFH    G CSC  Y
Sbjct: 1036 LPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 182/368 (49%), Gaps = 4/368 (1%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M  LG+         LL         R G   H +++K  +     +   LI FY K
Sbjct: 405 FVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAK 464

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              + DA  +F+ M  ++ +SW ++IS  S    + EA+ LFIRM     E +  T  +V
Sbjct: 465 SNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSV 524

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +CA +  +  G+ +H   +K+       + ++LLDMY+          +F  + +++V
Sbjct: 525 LPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNV 584

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
           VS TA+I+ Y + GL ++   L +++ ++G+  +     S L A +G  +L  GK VH +
Sbjct: 585 VSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGY 644

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            +R  +   + + N+L++MY KC ++  +R +FD ++ + VISWN ++ GYS++    E 
Sbjct: 645 TIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNES 704

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
             LF+ M  +   +P++VT   +L   +     +RG  +    +  + GF  +      +
Sbjct: 705 FSLFSDMLLQ--FRPNAVTMTCILPAAASISSLERGREIHAYAL--RRGFLEDSYASNAL 760

Query: 406 VDMLGRAG 413
           VDM  + G
Sbjct: 761 VDMYVKCG 768



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 201/432 (46%), Gaps = 34/432 (7%)

Query: 33  LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP 92
           ++ LC  G L  AL  + + G  +    Y  ++  C  +R+L   +R HA +I+      
Sbjct: 73  IQRLCQAGDLAGALRLLGSDG-GVDVRSYCMVVQLCGEERSLEAAKRAHA-LIRASSAAA 130

Query: 93  V-----YLRTRLIVFYNKCECLSDARKMFDEM--RERNVVSWTAMISAYSQKAHSFEALN 145
                  L  RL++ Y KC  L +AR +FD M  +  +V  WT+++SAY++     EA++
Sbjct: 131 TGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVS 190

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205
           LF +M      P+    + VL   +       G+ IH L+ K        V ++L+ +Y+
Sbjct: 191 LFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYS 250

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + GR+ +A  VF+ +  RD +S  ++I G    G    A++LF K+  +G   + VT  S
Sbjct: 251 RCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLS 310

Query: 266 VLTALSGLAALGHGKQVHSHVLR----FEIPSY------VVLQNSLIDMYSKCGSLTYSR 315
           VL A +GL     GK VH + ++    + + S         L + L+ MY KCG +  +R
Sbjct: 311 VLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASAR 370

Query: 316 RVFDNMSER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS---- 370
           RVFD MS +  V  WN ++ GY+K G   E + LF  M E   + PD      +L     
Sbjct: 371 RVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELG-IAPDEHAISCLLKCITC 429

Query: 371 -GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
             C+  G+   G  V       K GF  +      ++    ++  +G+A+     MP + 
Sbjct: 430 LSCARDGLVAHGYIV-------KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQD 482

Query: 430 TAAILGSLLGAC 441
           T +   S++  C
Sbjct: 483 TIS-WNSVISGC 493



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 14/339 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+         +L    +  +L  G+ +H  + K        +   LI  Y++C 
Sbjct: 194 QMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCG 253

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + DA ++FD M  R+ +SW +MI           A++LF +M    TE +  T  +VL 
Sbjct: 254 RMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLP 313

Query: 168 SCAGAFGFEL-GKQIHSLIIKSNF-------ESHI---YVGSSLLDMYAKAGRIHEARGV 216
           +CAG  G+ L GK +H   +KS         +S I    +GS L+ MY K G +  AR V
Sbjct: 314 ACAG-LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRV 372

Query: 217 FECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           F+ +  + +V     I+ GYA++G  EE++ LF ++   G+  +    + +L  ++ L+ 
Sbjct: 373 FDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSC 432

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
              G   H ++++    +   + N+LI  Y+K   +  +  VF+ M  +  ISWN+++ G
Sbjct: 433 ARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISG 492

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            S +G+  E +ELF  M  + + + DSVT L+VL  C+ 
Sbjct: 493 CSSNGLNSEAIELFIRMWTQGQ-ELDSVTLLSVLPACAQ 530


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/515 (40%), Positives = 325/515 (63%), Gaps = 18/515 (3%)

Query: 127 WTAMISAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185
           W  MI  YS+  +  EA+ L++ M+ +    PN FTF  +L SCA     E G ++HS I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 186 IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
           IK  FES ++V ++L+ +Y+  G ++ AR +F+    RD+VS   +I GYA++   E A+
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV-HSHVLRFEIPSYVVLQNSLIDM 304
            LF ++Q     S+ VT  +VL+A + L A   GK++ H ++         +L  +++DM
Sbjct: 122 CLFGEMQN----SDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 305 YSKCGSLTYS----RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE--ENKV 358
           Y+KCGS+  +    RRV  NM  +T   +N+M+ G ++HG+G   + +F   RE     +
Sbjct: 178 YAKCGSIDSALEIFRRVGKNM--KTGFVFNSMIAGLAQHGLGETAITVF---RELISTGL 232

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           KPD VT++ VL  C H G+ + G  +F  + +   G +P++EHYGC+VD+LGR G + EA
Sbjct: 233 KPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY-GIKPQMEHYGCMVDLLGRYGCLEEA 291

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            + ++ MPFE  + I  +LL ACR H NV IGE  GQ+L+E+E ++   YV+LSN+ A A
Sbjct: 292 YDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADA 351

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
            +WE+  +VR++M++  + K PG S+IEL   +H F ASD+SHP  +E+   +K ++++ 
Sbjct: 352 NQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRL 411

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K AGYVP+ + V++D+DEE+KE V+  HSEKLAL FGL+       IR++KNLRIC DCH
Sbjct: 412 KSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCH 471

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
              K VS++YGR++++RD  RFHH   G+CSC D+
Sbjct: 472 KAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 141/285 (49%), Gaps = 9/285 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LLN+C    +L  G  VH+H+IK  +   +++R  LI  Y+    L+ AR +FDE  
Sbjct: 38  FPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESL 97

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++VS+  MI  Y++      AL LF  M  SD    E T   VL++CA    F+LGK+
Sbjct: 98  VRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKR 153

Query: 181 I-HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQ 237
           + H  I    F  +  + ++++DMYAK G I  A  +F  + +  +      ++I+G AQ
Sbjct: 154 LYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQ 213

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVV 296
            GL E AI +FR+L   G+  + VT+  VL A      +  GK++   +   + I   + 
Sbjct: 214 HGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQME 273

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
               ++D+  + G L  +  +   M  E   + W A+L     HG
Sbjct: 274 HYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG 318


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/606 (34%), Positives = 334/606 (55%), Gaps = 36/606 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            ++  C     +  G+RVH  M++      V L   ++  Y KC     AR++F  M ER
Sbjct: 117 AVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAER 176

Query: 123 NVVSWT-------------------------------AMISAYSQKAHSFEALNLFIRML 151
           + VSW                                 +IS   +  H+ +AL+   RM 
Sbjct: 177 DAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMA 236

Query: 152 RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH 211
           ++    N +T++T           +LG+Q+H  ++ +  E   +V SSL+DMY K G + 
Sbjct: 237 QAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLE 296

Query: 212 EARGVFECLP--ERDV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            A  VF+      RD+  + + +++GY Q G +EEA++LFR++  EG+ ++  T  SV  
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAA 356

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + +  +  G+QVH  V +        L ++++DMY+KCG+L  +R +FD    + +  
Sbjct: 357 ACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W +ML  Y+ HG GR  +ELF  M  E K+ P+ +T + VLS CSH G+   G   F ++
Sbjct: 417 WTSMLCSYASHGQGRIAIELFERMTAE-KMTPNEITLVGVLSACSHVGLVSEGELYFKQM 475

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
            + + G  P IEHY C+VD+ GR+G + +A  FI+       A +  +LL ACR+H + +
Sbjct: 476 QE-EYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNE 534

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
             +   ++L+++E  +AG+YV+LSN+YA+  +W D   +R  M+E+ V K PGRSWI L 
Sbjct: 535 YAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLK 594

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +HTF A D SHP   E+ A +++L  + KE GY      V++DV++EQ+E  L  HSE
Sbjct: 595 NTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSE 654

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLA+ FG+I TP G P+R+ KNLR+C DCH   K++S   GR++ +RD  RFHH  + +C
Sbjct: 655 KLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASC 714

Query: 629 SCGDYW 634
           SC D+W
Sbjct: 715 SCEDFW 720



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 167/358 (46%), Gaps = 38/358 (10%)

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRML-RSD 154
           R  ++ F+ +     DAR +FDE   R    WT  IS  +++    + +  F  ML   +
Sbjct: 48  RASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGE 107

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             PN F  A V+  CAG    E GK++H  ++++     + + +++LDMYAK G+   AR
Sbjct: 108 ATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 215 GVFECLPERDVVSCT-------------------------------AIISGYAQLGLDEE 243
            VF  + ERD VS                                  IISG  + G   +
Sbjct: 168 RVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAAD 227

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+   R++   G++ N+ TY++       L     G+Q+H  VL   +     +++SL+D
Sbjct: 228 ALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMD 287

Query: 304 MYSKCGSLTYSRRVFDNMSERTV---ISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           MY KCG L  +  VFD+ S  T     +W+ M+ GY ++G   E ++LF  M  E  V  
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREG-VAA 346

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           D  T  +V + C++ GM ++G  V H  V+ K  ++ +      +VDM  + G + +A
Sbjct: 347 DRFTLTSVAAACANVGMVEQGRQV-HGCVE-KLWYKLDAPLASAIVDMYAKCGNLEDA 402


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/543 (40%), Positives = 324/543 (59%), Gaps = 6/543 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++ + L+  Y K     +A+ + D + E++VV  TA+I  YSQK    EA+  F  ML 
Sbjct: 183 VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLV 242

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +PNE+T+A+VL SC        GK IH L++KS FES +   +SLL MY +   + +
Sbjct: 243 EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 302

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           +  VF+C+   + V+ T++ISG  Q G +E A+  FRK+  + +  N  T +S L   S 
Sbjct: 303 SLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSN 362

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA    G+QVH  V ++         + LI++Y KCG    +R VFD +SE  VIS N M
Sbjct: 363 LAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTM 422

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  Y+++G GRE +ELF  M     ++P+ VT L+VL  C++ G+ + G  +F      K
Sbjct: 423 IYSYAQNGFGREALELFERMINLG-LQPNDVTVLSVLLACNNSGLVEEGCELFDSFR--K 479

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
           D      +HY C+VDMLGRAGR+ EA   I  +   P   +  +LL AC+VH  V++ E 
Sbjct: 480 DKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAER 538

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           + ++++EI P + G  ++LSNLYAS G+W+ V  ++  MKE  + K+P  SW+E+D+  H
Sbjct: 539 ITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETH 598

Query: 513 TFHASDR-SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           TF A D  SHP  E++   +++L  K K+ GYV D SCV  D++E  KE+ L  HSEKLA
Sbjct: 599 TFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLA 658

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + F  +    G  IR++KNLR+CVDCH++ K VS++  R++  RD  RFHH  +G+CSCG
Sbjct: 659 IAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCG 717

Query: 632 DYW 634
           DYW
Sbjct: 718 DYW 720



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 11/314 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L +C N + +  G+ +H  M+K+ +   +  +T L+  Y +C  + D+  +F  ++
Sbjct: 252 YASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIK 311

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N V+WT++IS   Q      AL  F +M+R   +PN FT ++ L  C+    FE G+Q
Sbjct: 312 YPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQ 371

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H ++ K  F+   Y GS L+++Y K G    AR VF+ L E DV+S   +I  YAQ G 
Sbjct: 372 VHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGF 431

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA+ELF ++   G+  N VT  SVL A +    +  G ++     + +I    +L N 
Sbjct: 432 GREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKDKI----MLTND 487

Query: 301 ----LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
               ++DM  + G L  +  +   ++   ++ W  +L     H   R+V     + R+  
Sbjct: 488 HYACMVDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSACKVH---RKVEMAERITRKIL 544

Query: 357 KVKPDSVTYLAVLS 370
           ++ P     L +LS
Sbjct: 545 EIAPGDEGTLILLS 558


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 339/590 (57%), Gaps = 5/590 (0%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            + M  LG+   F  + TL+ +  +   L  G+++H+ +I+  +   + + T +   Y K
Sbjct: 168 FLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVK 227

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           C  L  A    ++M  ++ V+ T ++  Y+Q A + +AL LF +M+    E + F F+ +
Sbjct: 228 CGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSII 287

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L +CA       GKQIHS  IK   ES + VG+ L+D Y K  R   AR  FE + E + 
Sbjct: 288 LKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPND 347

Query: 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH 285
            S +A+I+GY Q G  + A+E+F+ ++ +G++ N   Y ++  A S ++ L  G Q+H+ 
Sbjct: 348 FSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHAD 407

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345
            ++  + +Y+  ++++I MYSKCG + Y+ + F  + +   ++W A++  ++ HG   E 
Sbjct: 408 AIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEA 467

Query: 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405
           + LF  M + + V+P+ VT++ +L+ CSH G+   G      + D K G  P I+HY C+
Sbjct: 468 LRLFKEM-QGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTD-KYGVNPTIDHYNCM 525

Query: 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465
           +D+  RAG + EALE I++MPFEP      SLLG C    N++IG      +  ++P ++
Sbjct: 526 IDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDS 585

Query: 466 GNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMRE 525
             YVI+ NLYA AG+W++  + R++M E+ + K+   SWI +   +H F   DR HP  E
Sbjct: 586 ATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTE 645

Query: 526 ELSAKVKQLSVKFKEA-GYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAP 584
           ++ +K+K+L+V FK+    + +    L D  E + +  LL HSE+LA+ +GLI T    P
Sbjct: 646 QIYSKLKELNVSFKKGEERLLNEENALCDFTERKDQ--LLDHSERLAIAYGLICTAADTP 703

Query: 585 IRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           I V KN R C DCH FAK VS V GR++ +RD NRFHHI  G CSC DYW
Sbjct: 704 IMVFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW 753


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/575 (36%), Positives = 343/575 (59%), Gaps = 3/575 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L+ C +   ++ G++ H +++K+      Y++  LI  Y++C  +  A ++ D + 
Sbjct: 131 FTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVP 190

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             +V S+ +++SA  +     EA  +  RM+      +  T+ +VL  CA     +LG Q
Sbjct: 191 GDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQ 250

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ ++K+     ++V S+L+D Y K G +  AR  F+ L +R+VV+ TA+++ Y Q G 
Sbjct: 251 IHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGH 310

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EE + LF K+++E    N  T+A +L A + L AL +G  +H  ++     +++++ N+
Sbjct: 311 FEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNA 370

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI+MYSK G++  S  VF NM  R VI+WNAM+ GYS HG+G++ + +F  M    +  P
Sbjct: 371 LINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGEC-P 429

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           + VT++ VLS C H  +   G   F +I+  K   EP +EHY C+V +LGRAG + EA  
Sbjct: 430 NYVTFIGVLSACVHLALVQEGFYYFDQIMK-KFDVEPGLEHYTCMVALLGRAGLLDEAEN 488

Query: 421 FIKNMP-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           F+K     +       +LL AC +H N ++G+ + + +++++P + G Y +LSN++A A 
Sbjct: 489 FMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKAR 548

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +W+ V ++R+LMKE+ + K+PG SW+++    H F +   +HP   ++  KV+QL    K
Sbjct: 549 KWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIK 608

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GY PD+  VL+DV++EQKE  L  HSEKLAL +GL+  P   PIR+IKNLR+C DCH 
Sbjct: 609 PLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHI 668

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             K +SK   R + +RD NRFHH  EG C+C D+W
Sbjct: 669 AVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 194/372 (52%), Gaps = 7/372 (1%)

Query: 58  FEEYDTLLNACVNQRTLRGGQRVHAHMI---KTCYRPPVYLRTRLIVFYNKCECLSDARK 114
            +E   LL      ++LR G+ +HA ++   +T     +     LI  Y+KC     ARK
Sbjct: 23  LKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARK 82

Query: 115 MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE-PNEFTFATVLTSCAGAF 173
           +FD M +RNVVSW+A++  Y  K    E L LF  ++  D+  PNE+ F  VL+ CA + 
Sbjct: 83  LFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSG 142

Query: 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             + GKQ H  ++KS    H YV ++L+ MY++   +  A  + + +P  DV S  +I+S
Sbjct: 143 RVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILS 202

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
              + G   EA ++ +++  E +I + VTY SVL   + +  L  G Q+H+ +L+  +  
Sbjct: 203 ALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVF 262

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            V + ++LID Y KCG +  +R+ FD + +R V++W A+L  Y ++G   E + LF  M 
Sbjct: 263 DVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKME 322

Query: 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            E+  +P+  T+  +L+ C+       G  +   IV    GF+  +     +++M  ++G
Sbjct: 323 LED-TRPNEFTFAVLLNACASLVALAYGDLLHGRIV--MSGFKNHLIVGNALINMYSKSG 379

Query: 414 RVGEALEFIKNM 425
            +  +     NM
Sbjct: 380 NIDSSYNVFSNM 391


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 345/565 (61%), Gaps = 10/565 (1%)

Query: 77  GQRVHAHMIKTCYRPP-VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G+++H   +++   P   Y  + L+  Y+ C    DAR+ FDE+   N V  TAM S   
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 136 QKAHSFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +    +  L++F  M+ S +    +E      L++ A      +   IH+L+ K   +  
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 194 IYVGSSLLDMYAKAG--RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
             V ++++D YAK G   +  AR +F+ + +RDVVS   +I+ YAQ GL  EA+ L+ K+
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 252 QVEG--MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
            + G  +  N VT ++VL A +   A+  GK++H+ V+R  +   V +  S++DMYSKCG
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCG 345

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  + + F  +  + ++SW+AM+ GY  HG G+E + +F  MR+   +KP+ +T++ VL
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG-LKPNYITFITVL 404

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           + CSH G+   G   ++  +  + G EP +EHYGC+VD+LGRAG + EA   IK M  +P
Sbjct: 405 AACSHAGLLSEG-RYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKP 463

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            AA+ G+LL ACR++ NV++ +   +RL E++  N+G YV+LSN+YA AG W++V R+R 
Sbjct: 464 DAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRV 523

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           L+K + + K PG S +EL    H F+  D+SHP  +E+ A +++L  +  +AGYVP+   
Sbjct: 524 LVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGS 583

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+D+D E++E +L  HSEKLA+ F L+ + +G+ I VIKNLR+C DCH   K ++K+ G
Sbjct: 584 VLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTG 643

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++ +RD  RFHH  +G CSCGDYW
Sbjct: 644 REIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 8/187 (4%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPV 93
           NG  T+AL    +M  +G ++R        +L AC +   ++ G+R+H  +++      V
Sbjct: 272 NGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNV 331

Query: 94  YLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153
           Y+ T ++  Y+KC  +  A K F +++ +N++SW+AMI+ Y    +  EAL++F  M +S
Sbjct: 332 YVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKS 391

Query: 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIH 211
             +PN  TF TVL +C+ A     G+  ++  +K+ F  E  +     ++D+  +AG + 
Sbjct: 392 GLKPNYITFITVLAACSHAGLLSEGRYWYN-TMKTEFGIEPGVEHYGCMVDLLGRAGCLD 450

Query: 212 EARGVFE 218
           EA G+ +
Sbjct: 451 EAYGLIK 457


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 330/570 (57%), Gaps = 3/570 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     LRGG+ V        Y+  V++ + L+  Y +   + DA K+F  M  R+ 
Sbjct: 115 LSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDR 174

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+W+ M++ +       +A+ ++ RM     + +E     V+ +C  A    +G  +H  
Sbjct: 175 VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGH 234

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           +++      +   +SL+DMYAK G +  A  VF  +  R+ VS +A+ISG+AQ G  +EA
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
           + LFR +Q  G+  +     S L A S +  L  G+ VH  ++R       +L  + IDM
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDM 353

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           YSKCGSL  ++ +F+ +S+R +I WNAM+     HG G++ + LF  M  E  ++PD  T
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEM-NETGMRPDHAT 412

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           + ++LS  SH G+ + G   F  +V+      P  +HY C+VD+L R+G V EA + + +
Sbjct: 413 FASLLSALSHSGLVEEGKLWFGRMVN-HFKITPAEKHYVCLVDLLARSGLVEEASDLLTS 471

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           M  EPT AI  +LL  C  +  +++GE +   ++E++P++ G   ++SNLYA+  +W+ V
Sbjct: 472 MKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKV 531

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            +VR+LMK+    K PG S IE+    H F   D+SHP REE+ +KV +L ++ ++ GY+
Sbjct: 532 RQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYI 591

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           P    V +D++EE KE+ L  HSE+LA+ FGL+ T  G  + +IKNLR+C DCH+  K++
Sbjct: 592 PRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYI 651

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           SK+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 652 SKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 166/312 (53%), Gaps = 12/312 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC   R +R G  VH H+++   R  V   T L+  Y K   L  A ++F  M  RN
Sbjct: 215 VIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRN 274

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW+AMIS ++Q   S EAL LF  M  S  +P+     + L +C+     +LG+ +H 
Sbjct: 275 DVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG 334

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++  F+ +  +G++ +DMY+K G +  A+ +F  + +RD++   A+I+     G  ++
Sbjct: 335 FIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQD 393

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A+ LF+++   GM  ++ T+AS+L+ALS    +  GK     ++  F+I         L+
Sbjct: 394 ALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLV 453

Query: 303 DMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVG---YSKHGMGREVVELFNLMREENKV 358
           D+ ++ G +  +  +  +M +E TV  W A+L G     K  +G  + +  N++    ++
Sbjct: 454 DLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD--NIL----EL 507

Query: 359 KPDSVTYLAVLS 370
           +PD V  LA++S
Sbjct: 508 QPDDVGVLALVS 519



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +S++     AL +F R L     P+  TF   L++CA       G+ +      + ++  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V SSLL +YA+ G + +A  VF  +P RD V+ + +++G+   G   +AI+++R+++ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G+  + V    V+ A +    +  G  VH H+LR  +   VV   SL+DMY+K G L  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF  M  R  +SW+AM+ G++++G   E + LF  M + + ++PDS   ++ L  CS
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACS 321

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV-----VDMLGRAGRVGEALEFIKNMPFE 428
           + G    G +V   IV   D        + C+     +DM  + G +  A + + NM  +
Sbjct: 322 NIGFLKLGRSVHGFIVRRFD--------FNCILGTAAIDMYSKCGSLASA-QMLFNMISD 372

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLYAS 477
               +  +++  C  H        + Q + E  + P++A    +LS L  S
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 335/607 (55%), Gaps = 43/607 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPV--YLRTRLIVFYNKCECLSDARKMFDEMR 120
           +LL +C    T R    +HA +++T         +  RL   Y     L  +  +    R
Sbjct: 294 SLLTSC---STARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTR 350

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +   + +T+ I A+S + H   AL L   ML     P   T +  L +C G      G+ 
Sbjct: 351 DPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRG---LSPGRA 407

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKA--------------------------------G 208
           +H    K       YV ++LL MYA+A                                G
Sbjct: 408 LHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMG 467

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            + +AR +F+ LP +D V   A+I GY Q G   EA+ LFR++   G+  + VT   VL+
Sbjct: 468 ALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLS 527

Query: 269 ALSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327
           A++ L  +  GK +HS+V     +   V +  +LIDMY KCGSL  +  VF  + ++ ++
Sbjct: 528 AVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            WNAM+ GY+ HG  R+ +E+F   RE+  + P  +T++ +L+ CSH GM + G   F  
Sbjct: 588 VWNAMINGYAMHGDSRKALEMFVQSREQG-LWPTDITFIGLLNACSHSGMVEEGREFFQS 646

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447
           + + + G +P+IEHYGC+VD+LGRAG + EA   +++M   P A +  SLL ACR+H N+
Sbjct: 647 M-EREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNM 705

Query: 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
            +G+ +   L+     N+G Y++LSN+YA+ G W +V RVR +MK   + K+PG S IE+
Sbjct: 706 SLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEI 765

Query: 508 DQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHS 567
           D+ ++ F A D SHP  +E+   + +++   KE G+VP    VL+D+DE  KEK L  HS
Sbjct: 766 DREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHS 825

Query: 568 EKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGT 627
           EKLAL FGLI T  GA I+++KNLR C DCH   K +S++ GRK+  RD+NRFHH V+G+
Sbjct: 826 EKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGS 885

Query: 628 CSCGDYW 634
           CSCGDYW
Sbjct: 886 CSCGDYW 892


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 329/546 (60%), Gaps = 36/546 (6%)

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN--EFTFATVLTSCAGAFGFELGKQ 180
           N+ ++ A++ A+SQ       ++ F   L     PN  E+TF +VL +CAG      G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAK-------------------------------AGR 209
           +H  + K   ES+++V +SL+D+Y K                               +G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLT 268
           + +AR VF+ + E+++VS + +ISGYA+     +AIELFR++Q EG ++ N VT  SVL+
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 268

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A + L AL  GK +H  + R +I   + L N+L DMY+KCG +  ++ VF  M ER VIS
Sbjct: 269 ACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVIS 328

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W+ +++G + +G   E    F  M E+  ++P+ ++++ +L+ C+H G+ D+GL  F ++
Sbjct: 329 WSIIIMGLAMYGYANEAFNFFAEMIEDG-LEPNDISFMGLLTACTHAGLVDKGLEYF-DM 386

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
           +    G  P+IEHYGCVVD+L RAGR+ +A   I +MP +P   + G+LLG CR++ + +
Sbjct: 387 MPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
            GE V  R++E++  ++G+ V L+N+YAS GR +D    R  M++    K PG SWIE++
Sbjct: 447 RGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 506

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             ++ F   D SHP    + + +++L  K K AGY P    V++++DEE+KE  L  HSE
Sbjct: 507 NSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSE 566

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           KLAL FGLI T EG  IR++KNLR+C DCH+  K +SK+  R++ +RD++RFHH  +G C
Sbjct: 567 KLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKC 626

Query: 629 SCGDYW 634
           SC DYW
Sbjct: 627 SCNDYW 632



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 34/309 (11%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK--CECLSD------- 111
           + ++L AC     +  GQ+VH  + K      +++R  L+  Y K  C C++        
Sbjct: 130 FTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMV 189

Query: 112 ----------------------ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
                                 AR +FD M E+N+VSW+ MIS Y++     +A+ LF +
Sbjct: 190 VRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQ 249

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           M       PN+ T  +VL++CA     +LGK IH  I ++  E  +++G++L DMYAK G
Sbjct: 250 MQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCG 309

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            + EA+GVF  + ERDV+S + II G A  G   EA   F ++  +G+  N +++  +LT
Sbjct: 310 CVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLT 369

Query: 269 ALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTV 326
           A +    +  G +    + + + I   +     ++D+ S+ G L  +  + ++M  +  V
Sbjct: 370 ACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNV 429

Query: 327 ISWNAMLVG 335
           I W A+L G
Sbjct: 430 IVWGALLGG 438



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 137/286 (47%), Gaps = 21/286 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC +   L  G+ +H  + +      ++L   L   Y KC C+ +A+ +F EM ER
Sbjct: 265 SVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER 324

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-------GAFGF 175
           +V+SW+ +I   +   ++ EA N F  M+    EPN+ +F  +LT+C        G   F
Sbjct: 325 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYF 384

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
           ++  Q++ +  K      I     ++D+ ++AGR+ +A  +   +P +  V     + G 
Sbjct: 385 DMMPQVYGITPK------IEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 438

Query: 236 AQLGLDEEAIE--LFRKLQVEGMISNYVTY-ASVLTALSGL--AALGHGKQVHSHVLRFE 290
            ++  D E  E  ++R L+++   S  + Y A+V  ++  L  AA    +   +  ++  
Sbjct: 439 CRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTP 498

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             S++ + NS+ + +    S   S R++  + E   + W   + GY
Sbjct: 499 GCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRE---LKWKMKVAGY 541


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 330/539 (61%), Gaps = 5/539 (0%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEP 157
           LI  Y +C CL  A ++FD +  + V SW A+I A++Q   +  A+ LF  M  +   +P
Sbjct: 313 LIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKP 372

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           + F+  ++L +C        GK  H  I+++  E   ++  SLL +Y + GR   AR +F
Sbjct: 373 DWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLF 432

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAA 275
           + + E+D VS   +I+GY+Q GL  E+++LFR++Q +  G   + +   S L A S L A
Sbjct: 433 DAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPA 492

Query: 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           +  GK++H   L+ ++     L +S+IDMYSKCGS+  +R  FD +  +  +SW  M+ G
Sbjct: 493 VRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITG 552

Query: 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
           Y+ +G G+E V L++ M  E  ++PD  TYL +L  C H GM + GL  F E+ +     
Sbjct: 553 YAVNGRGKEAVGLYDKMGREG-MEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPK-I 610

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQ 455
           E ++EHY CV+ ML RAGR  +A+  ++ MP EP A IL S+L AC +H  V++G+ V  
Sbjct: 611 EAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVAD 670

Query: 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFH 515
           +L+E+EP  A +YV+ SN+YA + +W+++ +VR+++++  V K+PG SWI++   +++F 
Sbjct: 671 KLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFV 730

Query: 516 ASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFG 575
           A + S P   ++      L  K + AGY PD + +L++++EE+K + L  HSEK A+ FG
Sbjct: 731 AGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFG 790

Query: 576 LIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           L+ T     +RV KN+R+C DCHN AK +SKV  R++ +RDK RFHH  +G CSCGDYW
Sbjct: 791 LLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 165/312 (52%), Gaps = 9/312 (2%)

Query: 72  RTLRG--GQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWT 128
           ++ RG  G++VHA   K        ++   L+  Y +C  + DA K+F+ M  RN+VSW 
Sbjct: 75  KSCRGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWN 134

Query: 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
           A+++A +      E     +  L     P+E T  TVL  CA     E G+ +H L +KS
Sbjct: 135 ALMAAVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKS 194

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAI 245
            +++   V + L+DMYAK G + +A   F   P    R+VVS   ++ GYA+ G    A 
Sbjct: 195 GWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAF 254

Query: 246 ELFRKLQVE--GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLI 302
            L R++Q+E  G+ ++ +T  SVL   SGL  L   +++H+ V+R  +  +  ++ N+LI
Sbjct: 255 GLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALI 314

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
             Y +CG L ++ RVFD +  + V SWNA++  ++++G     +ELF  M      KPD 
Sbjct: 315 AAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDW 374

Query: 363 VTYLAVLSGCSH 374
            +  ++L  C +
Sbjct: 375 FSIGSLLLACGN 386



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 176/376 (46%), Gaps = 20/376 (5%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE- 121
           T+L  C        G+ VH   +K+ +     +   L+  Y KC  ++DA   F E    
Sbjct: 170 TVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPG 229

Query: 122 --RNVVSWTAMISAYSQKAHSFEALNLF--IRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177
             RNVVSW  M+  Y++   +  A  L   ++M       +E T  +VL  C+G      
Sbjct: 230 AGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAK 289

Query: 178 GKQIHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
            +++H+ +++     +   V ++L+  Y + G +  A  VF+ +  + V S  A+I  +A
Sbjct: 290 LRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHA 349

Query: 237 QLGLDEEAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295
           Q G    AIELFR++    G   ++ +  S+L A   L  L HGK  H  +LR  +    
Sbjct: 350 QNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDS 409

Query: 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
            ++ SL+ +Y +CG  + +R +FD + E+  +SWN M+ GYS++G+  E ++LF  M+ +
Sbjct: 410 FIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSK 469

Query: 356 NKVK-PDSVTYLAVLSGCSH-----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
                P  +   + L  CS       G E    A+  ++  C+D F         ++DM 
Sbjct: 470 KGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADL--CEDSFLSS-----SIIDMY 522

Query: 410 GRAGRVGEALEFIKNM 425
            + G V +A  F   +
Sbjct: 523 SKCGSVDDARVFFDRL 538



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 43/344 (12%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL AC N + L  G+  H  +++       ++R  L+  Y +C   S AR +FD + E+
Sbjct: 379 SLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEK 438

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRML--RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           + VSW  MI+ YSQ     E+L LF  M   +    P+     + L +C+      LGK+
Sbjct: 439 DEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKE 498

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +K++     ++ SS++DMY+K G + +AR  F+ L  +D VS T +I+GYA  G 
Sbjct: 499 MHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGR 558

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF-EIPSYVVLQN 299
            +EA+ L+ K+  EGM  +  TY  +L       A GH   +   +  F E+ +   ++ 
Sbjct: 559 GKEAVGLYDKMGREGMEPDGFTYLGLLM------ACGHAGMLEDGLCFFQEMRNLPKIEA 612

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
            L       G L+ + R  D                          V L  +M EE    
Sbjct: 613 KLEHYACVIGMLSRAGRFAD-------------------------AVALMEVMPEE---- 643

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHY 402
           PD+    +VLS C   G  + G  V  ++++     EP + EHY
Sbjct: 644 PDAKILSSVLSACHMHGEVELGKKVADKLLE----LEPHKAEHY 683


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 332/571 (58%), Gaps = 5/571 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     LRGG+ V        Y+  V++ + L+  Y +   + DA K+F  M  R+ 
Sbjct: 115 LSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDR 174

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V+W+ M++ +       +A+ ++ RM     + +E     V+ +C  A    +G  +H  
Sbjct: 175 VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGH 234

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
           +++      +   +SL+DMYAK G +  A  VF  +  R+ VS +A+ISG+AQ G  +EA
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLID 303
           + LFR +Q  G+  +     S L A S +  L  G+ VH  ++R F+     +L  + ID
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDF--NCILGTAAID 352

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYSKCGSL  ++ +F+ +S+R +I WNAM+     HG G++ + LF  M  E  ++PD  
Sbjct: 353 MYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEM-NETGMRPDHA 411

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T+ ++LS  SH G+ + G   F  +V+      P  +HY C+VD+L R+G V EA + + 
Sbjct: 412 TFASLLSALSHSGLVEEGKLWFGRMVN-HFKITPAEKHYVCLVDLLARSGLVEEASDLLT 470

Query: 424 NMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483
           +M  EPT AI  +LL  C  +  +++GE +   ++E++P++ G   ++SNLYA+  +W+ 
Sbjct: 471 SMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDK 530

Query: 484 VTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGY 543
           V +VR+LMK+    K PG S IE+    H F   D+SHP REE+ +KV +L ++ ++ GY
Sbjct: 531 VRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGY 590

Query: 544 VPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKF 603
           +P    V +D++EE KE+ L  HSE+LA+ FGL+ T  G  + +IKNLR+C DCH+  K+
Sbjct: 591 IPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKY 650

Query: 604 VSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           +SK+  R++ +RD  RFHH  +G CSC DYW
Sbjct: 651 ISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 166/312 (53%), Gaps = 12/312 (3%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           ++ AC   R +R G  VH H+++   R  V   T L+  Y K   L  A ++F  M  RN
Sbjct: 215 VIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRN 274

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
            VSW+AMIS ++Q   S EAL LF  M  S  +P+     + L +C+     +LG+ +H 
Sbjct: 275 DVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG 334

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I++  F+ +  +G++ +DMY+K G +  A+ +F  + +RD++   A+I+     G  ++
Sbjct: 335 FIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQD 393

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A+ LF+++   GM  ++ T+AS+L+ALS    +  GK     ++  F+I         L+
Sbjct: 394 ALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLV 453

Query: 303 DMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVG---YSKHGMGREVVELFNLMREENKV 358
           D+ ++ G +  +  +  +M +E TV  W A+L G     K  +G  + +  N++    ++
Sbjct: 454 DLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD--NIL----EL 507

Query: 359 KPDSVTYLAVLS 370
           +PD V  LA++S
Sbjct: 508 QPDDVGVLALVS 519



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 174/352 (49%), Gaps = 18/352 (5%)

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           +S++     AL +F R L     P+  TF   L++CA       G+ +      + ++  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           ++V SSLL +YA+ G + +A  VF  +P RD V+ + +++G+   G   +AI+++R+++ 
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G+  + V    V+ A +    +  G  VH H+LR  +   VV   SL+DMY+K G L  
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF  M  R  +SW+AM+ G++++G   E + LF  M + + ++PDS   ++ L  CS
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACS 321

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV-----VDMLGRAGRVGEALEFIKNMPFE 428
           + G    G +V   IV   D        + C+     +DM  + G +  A + + NM  +
Sbjct: 322 NIGFLKLGRSVHGFIVRRFD--------FNCILGTAAIDMYSKCGSLASA-QMLFNMISD 372

Query: 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLME--IEPENAGNYVILSNLYASA 478
               +  +++  C  H        + Q + E  + P++A    +LS L  S 
Sbjct: 373 RDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSG 424


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 348/612 (56%), Gaps = 46/612 (7%)

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           D LL++C   ++ R  ++VHA +I T     P+     L    +    +S A  +FD   
Sbjct: 5   DFLLSSC---KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFP 61

Query: 121 ERNVVSWTAMIS----AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE 176
           + ++  +  +I     + +  A SF      IR  R    PN+++FA     C    G  
Sbjct: 62  QPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREER--LVPNQYSFAFAFKGCGSGVGVL 119

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMY-------------------------------A 205
            G+Q+    IK   E++++V ++L+ MY                               A
Sbjct: 120 EGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYA 179

Query: 206 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYAS 265
           + G++ EAR +F+ +PE+DVVS T +ISG  Q+G   EA+++F  +  +GM  N  T AS
Sbjct: 180 RLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLAS 239

Query: 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--E 323
            L A + L AL  G+ +H ++ +  I     L   LIDMY+KCG L ++ ++F++    +
Sbjct: 240 SLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLK 299

Query: 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383
           R V  WNAM+ G++ HG  +E +E+F  M+ E KV P+ VT++A+L+ CSHG   + G  
Sbjct: 300 RKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE-KVSPNKVTFVALLNACSHGNRVEEGRY 358

Query: 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV 443
            F E +      +PE+EHYGC+VD+LGRAGR+ EA E I +M   P  AI G+LL AC++
Sbjct: 359 YF-ESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKI 417

Query: 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRS 503
           H + ++GE VG+ + E++P + G +V+L+N+Y+  G W +   +RE + E    K PG S
Sbjct: 418 HKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCS 477

Query: 504 WIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE-EQKEKV 562
            IEL+ + H F   DRSHP  ++L   + ++  K K AGY+P+   VL D+D+ E +E  
Sbjct: 478 SIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETA 537

Query: 563 LLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHH 622
           LL HSEKLA+ FGL+ T    PIR++KNLR+C DCH   KF+SKVY R++ +RD+ R+HH
Sbjct: 538 LLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHH 597

Query: 623 IVEGTCSCGDYW 634
             +GTCSC DYW
Sbjct: 598 FKDGTCSCNDYW 609


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 341/559 (61%), Gaps = 7/559 (1%)

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           H +++K+ +    +    LI  Y +    +DA ++F+EMRE NV+S+T++++ + +    
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200
             AL +F +ML S   PN FTFATV+ +C+       G++IHS +     + ++ V SSL
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSL 169

Query: 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-N 259
           +DMY K   + +AR VF+ +  R+VVS T++I+ Y Q  L E A++LFR+     + S N
Sbjct: 170 IDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPN 229

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
           +   ASV+ A + L  L  GK  H+ V+R    S  V+ ++L+DMY+KCG + YS +VF 
Sbjct: 230 HFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFR 289

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            + + +VI + +M+VG +K+G+G+  +++F  M +  ++KP+ VT++ VL  CSH G+ D
Sbjct: 290 RIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDR-RIKPNDVTFVGVLHACSHSGLVD 348

Query: 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT--AAILGSL 437
            GL   H +   K G  P+ +HY CVVDMLGR GR+ EA +  K++  EP   A + G+L
Sbjct: 349 DGLEYLHSMHK-KHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTL 407

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           L A R++  VDI     + L+E   + A  YV +SN YA AG+WE+V  +R  MK   V 
Sbjct: 408 LSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVY 467

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMR-EELSAKVKQLSVKFKEAGYV-PDMSCVLYDVD 555
           K+PG SW+E+    + F+A D S   R  E+++ +++L  + KE GYV      V  DV+
Sbjct: 468 KEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVE 527

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE KE+++  HSE+LAL FGLI  P+G  IRV+KNLR+C DCH   K +S++  R   +R
Sbjct: 528 EEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVR 587

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D NRFHH   G+C+C D+W
Sbjct: 588 DVNRFHHFENGSCTCRDFW 606



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 5/302 (1%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + T++NAC     LR GQ++H+H+     +  + + + LI  Y KC  + DAR++FD M 
Sbjct: 131 FATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMD 190

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGK 179
            RNVVSWT+MI+AY Q A    AL LF        + PN F  A+V+ +CA       GK
Sbjct: 191 YRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGK 250

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
             H+ +I+   ES+  V S+L+DMYAK G I  +  VF  +P+  V+  T++I G A+ G
Sbjct: 251 VAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYG 310

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-VHSHVLRFEIPSYVVLQ 298
           L + ++++F+++    +  N VT+  VL A S    +  G + +HS   +  +       
Sbjct: 311 LGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHY 370

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355
             ++DM  + G L  + ++  ++    ++  + W  +L     +G     VE    + E 
Sbjct: 371 TCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIES 430

Query: 356 NK 357
           N+
Sbjct: 431 NQ 432



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 10/240 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +++NAC +   L  G+  HA +I+  +     + + L+  Y KC C+  + K+F  + + 
Sbjct: 235 SVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDP 294

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ-I 181
           +V+ +T+MI   ++      +L++F  ML    +PN+ TF  VL +C+ +   + G + +
Sbjct: 295 SVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYL 354

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL---PERDVVSCTAIISGYAQL 238
           HS+  K          + ++DM  + GR+ EA  + + +   P++  +    ++S     
Sbjct: 355 HSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLY 414

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
           G  + A+E  + L    + SN    A+ +T  +  A  G  + VHS  +R+E+  Y V +
Sbjct: 415 GRVDIAVEASKWL----IESNQQVAAAYVTMSNTYAMAGKWENVHS--IRYEMKHYGVYK 468


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/483 (39%), Positives = 308/483 (63%), Gaps = 10/483 (2%)

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           P    +A++L SC      + GKQ+H+ +  + F     + + L+++Y     +  AR +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           F+ +P+ ++     +I GYA  G  E A++L+ ++   G++ +  T+  VL A + L+A+
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT---VISWNAML 333
            HG+++H HV++      V +  +LIDMY+KCG +  +R VFD +  R    V+SWNAM+
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMI 252

Query: 334 VGYSKHGMGREVVELFNLMREENKV-KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV-DC 391
            GY+ HG   E ++LF    E N+V KPD +T++ VLS CSHGG+ + G   F  ++ D 
Sbjct: 253 TGYAMHGHATEALDLF---EEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDY 309

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           K   +P ++HY C+VD+LG +GR+ EA   I  M   P + + G+LL +C++H NV++GE
Sbjct: 310 K--IDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGE 367

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
              +RL+E+EP++AGNYVILSN+YA AG+WE V ++R+LM ++ + K    SWIE+   +
Sbjct: 368 IALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKV 427

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F + D SHP+ +E+ ++++++    KEAGY P    V +DV++++K  ++  HSE+LA
Sbjct: 428 HAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLA 487

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGLI TP G  + + KNLRIC DCH   KF+SK+  R++++RD NR+HH  +G CSCG
Sbjct: 488 IAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCG 547

Query: 632 DYW 634
           DYW
Sbjct: 548 DYW 550



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 157/313 (50%), Gaps = 20/313 (6%)

Query: 11  FSSLTFTQQQL------TVPSFPPNPQNLKTL--CSNGQLTKALIEMATLGLEMRFEEYD 62
           F+SL+   Q        + P F  N  +LK +  CSN              L   +  Y 
Sbjct: 27  FASLSLQYQSPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTC-------LTPTYSNYA 79

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL +C+ ++ ++ G+++HA +    +     + T+L+  Y  C+ LS AR +FD + + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           N+  W  +I  Y+       A+ L+ +M      P+ FTF  VL +CA     E G++IH
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLG 239
             ++++ +E  ++VG++L+DMYAK G +  AR VF+ +  RD   VVS  A+I+GYA  G
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHG 259

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQ 298
              EA++LF ++       +++T+  VL+A S    L  G      ++R ++I   V   
Sbjct: 260 HATEALDLFEEMNRVAK-PDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHY 318

Query: 299 NSLIDMYSKCGSL 311
             ++D+    G L
Sbjct: 319 TCMVDLLGHSGRL 331


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 333/592 (56%), Gaps = 10/592 (1%)

Query: 46   LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            L+EM      M +  + T L+AC N   L+    VHA +I       + +   L+  Y K
Sbjct: 541  LVEMLKTRKAMNYVTFTTALSACYNLEKLK---IVHAFVIHFAVHHNLIIGNTLVTMYGK 597

Query: 106  CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
               + +A+K+   M ER+VV+W A+I  ++        +  F  M R     N  T   +
Sbjct: 598  FGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNL 657

Query: 166  LTSCAGA-FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD 224
            L +C    +  + G  IH+ I+ + FE   YV SSL+ MYA+ G ++ +  +F+ L  ++
Sbjct: 658  LGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKN 717

Query: 225  VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
              +  AI S  A  G  EEA++   +++ +G+  +  +++  L  +  L  L  G+Q+HS
Sbjct: 718  SSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHS 777

Query: 285  HVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
             +++  FE+  YV+  N+ +DMY KCG +    R+      R+  SWN ++   ++HG  
Sbjct: 778  WIIKLGFELDEYVL--NATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFF 835

Query: 343  REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            R+  E F+ M +   +KPD VT++++LS CSHGG+ D GL  F  +   + G    IEH 
Sbjct: 836  RQATEAFHEMLDLG-LKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTS-EFGVPTAIEHC 893

Query: 403  GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
             C++D+LGR+GR+ EA  FI  MP  P   +  SLL AC+VH N+++G     RL E+  
Sbjct: 894  VCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNS 953

Query: 463  ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
             +   YV+ SN+ AS  RW DV  VR+ M+ +++ K P  SWI+L   + TF   D+ HP
Sbjct: 954  SDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHP 1013

Query: 523  MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
               ++ AK+++L    +E G++PD S  L D DEEQKE  L  HSE++AL FGLI + EG
Sbjct: 1014 QSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEG 1073

Query: 583  APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            +P+R+ KNLR+C DCH+  K VSK+ GRK+ +RD  RFHH   G CSC DYW
Sbjct: 1074 SPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 171/322 (53%), Gaps = 7/322 (2%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V +   LI  +   + + +A ++F+ M+ER+ +SW ++I+A +      E+L  F  M R
Sbjct: 386 VSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRR 445

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           +  + +  T + +L +C  A   + G+ +H LI KS  ES++ V +SLL MYA+AG   +
Sbjct: 446 THPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED 505

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           A  VF  +P RD++S  ++++ + + G    AI L  ++       NYVT+ + L+A   
Sbjct: 506 AELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYN 565

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  L   K VH+ V+ F +   +++ N+L+ MY K G +  +++V   M ER V++WNA+
Sbjct: 566 LEKL---KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNAL 622

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVDC 391
           + G++        ++ FNLMR E  +  + +T + +L  C S   +   G+ +   IV  
Sbjct: 623 IGGHADDKDPNATIQAFNLMRREGLLS-NYITIVNLLGTCMSPDYLLKHGMPIHAHIVVA 681

Query: 392 KDGFEPEIEHYGCVVDMLGRAG 413
             GFE +      ++ M  + G
Sbjct: 682 --GFELDTYVQSSLITMYAQCG 701



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 175/353 (49%), Gaps = 7/353 (1%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G+ +HA  +K   +   +    L+  Y+K   +  A+ +FD+M +RN  SW  MIS + +
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFESHI 194
                +A+  F  M  +   P+ +  A+++T+C  +G    E  +QIH  ++K    S++
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMT-EGARQIHGYVVKCGLMSNV 284

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +VG+SLL  Y   G + EA  +FE + E ++VS T+++  YA  G  +E + ++R L+  
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHN 344

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTY 313
           G+I    T A+V+           G Q+   V++  +  S V + NSLI M+    S+  
Sbjct: 345 GLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEE 404

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + RVF+NM ER  ISWN+++   + +G   E +  F  MR  +  K D +T  A+L  C 
Sbjct: 405 ASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP-KTDYITISALLPACG 463

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
                  G  + H ++  K G E  +     ++ M  +AG   +A      MP
Sbjct: 464 SAQHLKWGRGL-HGLIT-KSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP 514



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 187/371 (50%), Gaps = 18/371 (4%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G +++H +++K      V++ T L+ FY     +S+A K+F+E+ E N+VSWT+++  Y+
Sbjct: 267 GARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYA 326

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFE-LGKQIHSLIIKSNFE-SH 193
              H+ E LN++  +  +       T ATV+ +C G FG + +G QI   +IKS  + S 
Sbjct: 327 DNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTC-GMFGDKTMGYQILGDVIKSGLDTSS 385

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           + V +SL+ M+     + EA  VF  + ERD +S  +II+  A  G  EE++  F  ++ 
Sbjct: 386 VSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRR 445

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
               ++Y+T +++L A      L  G+ +H  + +  + S V + NSL+ MY++ GS   
Sbjct: 446 THPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED 505

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +  VF  M  R +ISWN+M+  + + G     + L   M +  K   + VT+   LS C 
Sbjct: 506 AELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAM-NYVTFTTALSACY 564

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHY----GCVVDMLGRAGRVGEALEFIKNMPFEP 429
           +  +E   L + H  V         + H       +V M G+ G + EA +  K MP E 
Sbjct: 565 N--LEK--LKIVHAFV-----IHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ER 614

Query: 430 TAAILGSLLGA 440
                 +L+G 
Sbjct: 615 DVVTWNALIGG 625



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 154/317 (48%), Gaps = 8/317 (2%)

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            +GK +H+L +K   + + +  ++L++MY+K G I  A+ VF+ + +R+  S   +ISG+
Sbjct: 164 NVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGF 223

Query: 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG-KQVHSHVLRFEIPSY 294
            ++G   +A++ F  +   G+  +    AS++TA      +  G +Q+H +V++  + S 
Sbjct: 224 VRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSN 283

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V +  SL+  Y   GS++ + ++F+ + E  ++SW +++V Y+ +G  +EV+ ++  +R 
Sbjct: 284 VFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLR- 342

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE-PEIEHYGCVVDMLGRAG 413
            N +     T   V+  C   G +  G  +  +++  K G +   +     ++ M G   
Sbjct: 343 HNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVI--KSGLDTSSVSVANSLISMFGNYD 400

Query: 414 RVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473
            V EA     NM    T +   S++ A    +N    E +G            +Y+ +S 
Sbjct: 401 SVEEASRVFNNMQERDTIS-WNSIITASA--HNGRFEESLGHFFWMRRTHPKTDYITISA 457

Query: 474 LYASAGRWEDVTRVREL 490
           L  + G  + +   R L
Sbjct: 458 LLPACGSAQHLKWGRGL 474



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K +  M   G+++    +   L    N   L  GQ++H+ +IK  +    Y+    +  Y
Sbjct: 739 KFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMY 798

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
            KC  + D  ++    + R+  SW  +ISA ++     +A   F  ML    +P+  TF 
Sbjct: 799 GKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFV 858

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS------LLDMYAKAGRIHEARGVF 217
           ++L++C+       G     L+  S+  S   V ++      ++D+  ++GR+ EA G  
Sbjct: 859 SLLSACSHG-----GLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFI 913

Query: 218 ECLP 221
           + +P
Sbjct: 914 DKMP 917


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 350/601 (58%), Gaps = 45/601 (7%)

Query: 73  TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD------ARKMFDEMRERNVVS 126
           T +  +++HA +    Y         L+  + K   LSD      A ++ D   +  + +
Sbjct: 18  TFKEVRQIHAKL----YVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFA 73

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRS--DTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
             +MI A+ +     ++ + + R+L S  D +P+ +T   ++ +C G    E G Q+H +
Sbjct: 74  LNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGM 133

Query: 185 IIKSNFESHIYVGSSLLDMYA-------------------------------KAGRIHEA 213
            I+  F++  +V + L+ +YA                               + G +  A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R +FE +PERD ++  A+ISGYAQ+G   EA+ +F  +Q+EG+  N V   SVL+A + L
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333
            AL  G+  HS++ R +I   V L  +L+D+Y+KCG +  +  VF  M E+ V +W++ L
Sbjct: 254 GALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313

Query: 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD 393
            G + +G G + +ELF+LM+++  V P++VT+++VL GCS  G  D G   F  + + + 
Sbjct: 314 NGLAMNGFGEKCLELFSLMKQDG-VTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRN-EF 371

Query: 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           G EP++EHYGC+VD+  RAGR+ +A+  I+ MP +P AA+  SLL A R++ N+++G   
Sbjct: 372 GIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLA 431

Query: 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHT 513
            ++++E+E  N G YV+LSN+YA +  W++V+ VR+ MK K V K PG S +E++  +H 
Sbjct: 432 SKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491

Query: 514 FHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALT 573
           F   D+SHP   ++ A  K +S + + AGY  D + V++D+DEE+KE  L  HSEK A+ 
Sbjct: 492 FFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIA 551

Query: 574 FGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDY 633
           FG++   E  PIR++KNLR+C DCH  +  +SK++ R++ +RD+NRFHH  +G CSC  +
Sbjct: 552 FGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGF 611

Query: 634 W 634
           W
Sbjct: 612 W 612



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 37/317 (11%)

Query: 53  GLEMRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           G +++ + Y  + L+ AC   R    G +VH   I+  +    +++T LI  Y +  CL 
Sbjct: 101 GNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLD 160

Query: 111 DARKMFDE-------------------------------MRERNVVSWTAMISAYSQKAH 139
              K+F+                                M ER+ ++W AMIS Y+Q   
Sbjct: 161 SCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGE 220

Query: 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199
           S EALN+F  M     + N     +VL++C      + G+  HS I ++  +  + + ++
Sbjct: 221 SREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATT 280

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           L+D+YAK G + +A  VF  + E++V + ++ ++G A  G  E+ +ELF  ++ +G+  N
Sbjct: 281 LVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPN 340

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            VT+ SVL   S +  +  G Q H   +R  F I   +     L+D+Y++ G L  +  +
Sbjct: 341 AVTFVSVLRGCSVVGFVDEG-QRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSI 399

Query: 318 FDNMSERT-VISWNAML 333
              M  +     W+++L
Sbjct: 400 IQQMPMKPHAAVWSSLL 416


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 332/524 (63%), Gaps = 6/524 (1%)

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAG 171
           R +FD++ +     + ++I A    A S  AL ++ RMLR+ +  PN FT A  L +CA 
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPA-AGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTA 230
                 G+Q+H+  ++    +  YV + LL++YAK  ++  AR VF+ +  ++++V+ +A
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           ++SGY+++G+  EA+ LFR++Q  G+  + VT  SV++A +   AL  GK VH+++ R  
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           I   + L  +LIDMY+KCG +  +R VFD M E+   +W+AM+VG++ HG+  + + LF+
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 318

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M E  KV+P++VT++ VLS C+H G+ + G   +  + +   G +P +E+YGC+VD+L 
Sbjct: 319 RMLEL-KVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL--GIKPSMENYGCMVDLLC 375

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R+G + +A  F+  MP  P + I  +LL AC+    +DI E   +RL+E+EP N  NYV+
Sbjct: 376 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 435

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSNLYAS  +W+ V+ +R  MK K VT   GRS IE++  LH F  SD SHP   E+   
Sbjct: 436 LSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLV 495

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           +++++ + + AG+ P  + VL+DV EE+KE  L  HSE+LA+ +GL+ T     IRV+KN
Sbjct: 496 LREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKN 555

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR C+DCH  AK +SK Y R++ +RD+ RFH  + G+CSC D+W
Sbjct: 556 LRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 150/274 (54%), Gaps = 4/274 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERN 123
           L AC        G+++HA  ++       Y++T L+  Y KCE ++ AR +FD M  ++N
Sbjct: 133 LKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKN 192

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+W+AM+S YS+     EAL LF  M     EP+E T  +V+++CA A   +LGK +H+
Sbjct: 193 LVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHA 252

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I +      + + ++L+DMYAK G I  ARGVF+ + E+D  + +A+I G+A  GL E+
Sbjct: 253 YIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVED 312

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF ++    +  N VT+  VL+A +    +  G++  S +    I   +     ++D
Sbjct: 313 ALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVD 372

Query: 304 MYSKCGSL--TYSRRVFDNMSERTVISWNAMLVG 335
           +  + G L   YS  +   +S  +VI W  +LV 
Sbjct: 373 LLCRSGLLDDAYSFVIGMPVSPNSVI-WRTLLVA 405



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +G+E       ++++AC     L  G+ VHA++ +      + L T LI  Y KC 
Sbjct: 218 EMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCG 277

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  AR +FD M E++  +W+AMI  ++      +AL LF RML     PN  TF  VL+
Sbjct: 278 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 337

Query: 168 SCAGAFGFELGKQIHSLI----IKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           +CA +   E G++  S++    IK + E++      ++D+  ++G + +A      +P
Sbjct: 338 ACAHSGLVEDGRRYWSIMQNLGIKPSMENY----GCMVDLLCRSGLLDDAYSFVIGMP 391


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 338/575 (58%), Gaps = 8/575 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF--YNKCECLSDARKMFDEMR 120
           +LL  C   +++   ++VHAH++K       +  + L+     ++   +  A  +F ++ 
Sbjct: 35  SLLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIE 91

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           E     +  MI       +  EAL L++ ML    EP+ FT+  VL +C+     + G Q
Sbjct: 92  EPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQ 151

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ + K+  E  ++V + L++MY K G I  A  VFE + E+ V S ++II  +A + +
Sbjct: 152 IHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEM 211

Query: 241 DEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
             E + L   +  EG   +      S L+A + L +   G+ +H  +LR      V ++ 
Sbjct: 212 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKT 271

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359
           SLIDMY K GSL     VF NM+++   S+  ++ G + HG GRE + +F+ M EE  + 
Sbjct: 272 SLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEG-LA 330

Query: 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
           PD V Y+ VLS CSH G+ + GL  F+ +   +   +P I+HYGC+VD++GRAG +  A 
Sbjct: 331 PDDVVYVGVLSACSHAGLVNEGLQCFNRL-QFEHKIKPTIQHYGCMVDLMGRAGMLKGAY 389

Query: 420 EFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479
           + IK+MP +P   +  SLL AC+VH+N++IGE   + + ++   N G+Y++L+N+YA A 
Sbjct: 390 DLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAK 449

Query: 480 RWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539
           +W DV R+R  M EK + + PG S +E ++ ++ F + D+S P  E +   ++Q+  + K
Sbjct: 450 KWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLK 509

Query: 540 EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHN 599
             GY PDMS VL DVDE++K + L  HS+KLA+ F LI T EG+ IR+ +N+R+C DCH 
Sbjct: 510 FEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHT 569

Query: 600 FAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           + KF+S +Y R++++RD+NRFHH  +GTCSC DYW
Sbjct: 570 YTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           ++ EL  K  V+G           L+ L    ++   KQVH+H+L+  +       ++L+
Sbjct: 21  QSSELNAKFNVQG-----------LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLV 69

Query: 303 DM--YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
                S+ GS+ Y+  +F  + E     +N M+ G + + M  E   L  +   E  ++P
Sbjct: 70  ATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRG-NVNSMNLEEALLLYVEMLERGIEP 128

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
           D+ TY  VL  CS  G    G+ +   +   K G E ++     +++M G+ G +  A  
Sbjct: 129 DNFTYPFVLKACSLLGALKEGVQIHAHVF--KAGLEGDVFVQNGLINMYGKCGAIEHASV 186

Query: 421 FIKNMPFEPTAAILGSLLGA 440
             + M  E + A   S++GA
Sbjct: 187 VFEQMD-EKSVASWSSIIGA 205


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 326/533 (61%), Gaps = 19/533 (3%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           + +AR+ FD+M ERN+ SWT+++SAY +      A  +F  M     E N   +  +LT 
Sbjct: 132 MENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM----PEWNLVAWTAMLT- 186

Query: 169 CAGAFGFELGKQI--HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
                G+ L   +        S  E  +   +++L  YA  G +   R +F+ +PERD++
Sbjct: 187 -----GYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLI 241

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQ-----VEGMISNYVTYASVLTALSGLAALGHGKQ 281
           S   +++   +  L EE+ ELF ++       +GM  N VT+ ++L A S L AL  G++
Sbjct: 242 SWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRK 301

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +H+ V      + +V+ N+L++ Y +CG+L  ++ VFD M  R VISW++M+  +++ G 
Sbjct: 302 IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGR 361

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             E +EL++ M  E  + PD + +++VL  CS+ G+ +     F  IV      EP +EH
Sbjct: 362 VDEAMELYHRMLSEGTL-PDDIIFISVLFACSNSGVVEASGDFFRSIVG-DTQVEPTLEH 419

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
           Y C+VD+LGRAG++ +A + ++ MPF P   +  ++L AC+++ +V+ GE   + + E++
Sbjct: 420 YACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELD 479

Query: 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
           PEN+  Y+ L+N+Y++A R +D  R+R+LM+E+ + K PG SWIE+   +H F A D+ H
Sbjct: 480 PENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMH 539

Query: 522 PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
           P R+E+ A++++L  + KEAGY  D   VL DV+E++KE +L  HSEKLA+ FGLI TP 
Sbjct: 540 PQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPP 599

Query: 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           GAP+R++KNLR+C DCH   K +SKV GR++ +RD NRFHH   G CSC DYW
Sbjct: 600 GAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 153/324 (47%), Gaps = 22/324 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           ++  Y +   LS+A+ +FD M   ++ SWTA++SA++   H  EA  LF  M   D    
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDL--- 85

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
              +  +LT  A     E  K     +     E  +   +++L   A+ G++  AR  F+
Sbjct: 86  -IAWTIMLTVLATFSNIEDAKYHFDQMP----ERDLVAWTAMLAANAERGQMENARETFD 140

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            +PER++ S T+++S Y + G  + A  +F  +       N V + ++LT  S    +  
Sbjct: 141 QMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPE----WNLVAWTAMLTGYSLSGDVVR 196

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            K+    +   ++ ++     +++  Y+  G L Y+R +F  M ER +ISW  M+    +
Sbjct: 197 AKRAFDSMPERDLIAW----TAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVE 252

Query: 339 HGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394
           + +  E  ELF+ M         + P+ VT++ +L  CS  G    G  + H  V  + G
Sbjct: 253 NDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKI-HAAV-AERG 310

Query: 395 FEPEIEHYGCVVDMLGRAGRVGEA 418
           F+ ++     +V+  GR G +G+A
Sbjct: 311 FDTDLVVSNALVNFYGRCGALGDA 334



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 36/211 (17%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-- 154
           T ++  Y+    +  A++ FD M ER++++WTAM+SAY+   H      +F RM   D  
Sbjct: 182 TAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLI 241

Query: 155 ----------------------------------TEPNEFTFATVLTSCAGAFGFELGKQ 180
                                               PN  TF T+L +C+       G++
Sbjct: 242 SWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRK 301

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ + +  F++ + V ++L++ Y + G + +A+ VF+ +  RDV+S +++IS +AQ G 
Sbjct: 302 IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGR 361

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            +EA+EL+ ++  EG + + + + SVL A S
Sbjct: 362 VDEAMELYHRMLSEGTLPDDIIFISVLFACS 392



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           TLL+AC     L  G+++HA + +  +   + +   L+ FY +C  L DA+ +FD MR R
Sbjct: 285 TLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRR 344

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQI 181
           +V+SW++MISA++Q+    EA+ L+ RML   T P++  F +VL +C+ +   E  G   
Sbjct: 345 DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFF 404

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD----VVSCTAIISGYAQ 237
            S++  +  E  +   + ++D+  +AG++ +A  +   +P        ++  +    Y  
Sbjct: 405 RSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTD 464

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +   E A E+  +L  E   S Y+T A++ +A
Sbjct: 465 VERGEAAAEVVFELDPENS-SPYITLANIYSA 495


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/622 (36%), Positives = 358/622 (57%), Gaps = 39/622 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP-PVYLRTRLIVFYNKCE 107
           M   GL   F+  D      V +   R G+ VHAH+I+T      V +   L+  Y K  
Sbjct: 295 MQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG 354

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQ------------------------------- 136
            ++DA  +F+ M E++ VSW ++IS   Q                               
Sbjct: 355 AIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSD 414

Query: 137 -KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
            +A   +A+  F++M+R     +  TF  +L++ +     E+  QIH+L++K        
Sbjct: 415 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 474

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           +G++LL  Y K G ++E   +F  + E RD VS  ++ISGY    L  +A++L   +  +
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 534

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G   +  T+A++L+A + +A L  G +VH+  +R  + S VV+ ++L+DMYSKCG + Y+
Sbjct: 535 GQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYA 594

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
            R F+ M  R V SWN+M+ GY++HG G + ++LF  M  + +  PD VT++ VLS CSH
Sbjct: 595 SRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ-PPDHVTFVGVLSACSH 653

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G  + G   F  + +      P +EH+ C+VD+LGRAG++ E  +FI +MP +P   I 
Sbjct: 654 VGFVEEGFEHFKSMSEVYR-LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIW 712

Query: 435 GSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
            ++LGAC R +  N ++G    + L+E+EP+NA NYV+L+N+YAS  +WEDV + R  MK
Sbjct: 713 RTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMK 772

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           E AV K+ G SW+ +   +H F A D+ HP ++ +  K+++L+ K ++AGY+P     L+
Sbjct: 773 EAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALF 832

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           D++ E KE++L  HSEK+A+ F ++      PIR++KNLR+C DCH+   ++SK+ GR++
Sbjct: 833 DLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQI 891

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            LRD NRFHH  +G CSCGDYW
Sbjct: 892 VLRDSNRFHHFEDGKCSCGDYW 913



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 188/370 (50%), Gaps = 24/370 (6%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMA----------TLGLEMRFEEY 61
           S+ TFT    T   FPP    L    +  Q TK+L ++              L    E +
Sbjct: 45  STPTFTT--FTASPFPPLKSLLFKPLNPNQCTKSLQDLVDHYKTSTSHCNTTLFSSSETF 102

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           ++L+N           + +H   IK  +   ++L   LI  Y +   L  A+K+FDEM  
Sbjct: 103 ESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSN 162

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGK 179
           RN+V+W  +IS Y+Q     EA   F  M+R+   PN + F + L +C  +G  G +LG 
Sbjct: 163 RNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGV 222

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           QIH LI K+ + S + V + L+ MY       ++AR VF+ +  R+ +S  +IIS Y++ 
Sbjct: 223 QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRR 282

Query: 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH----GKQVHSHVLRFEI-PS 293
           G    A +LF  +Q EG+  ++        A S  + L      G++VH+HV+R  +  +
Sbjct: 283 GDAVSAYDLFSSMQKEGLGFSFKPN----DAFSEFSVLEEGRRKGREVHAHVIRTGLNDN 338

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
            V + N L++MY+K G++  +  VF+ M E+  +SWN+++ G  ++    +  E+F+LM 
Sbjct: 339 KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMP 398

Query: 354 EENKVKPDSV 363
           E ++V  +SV
Sbjct: 399 EYDQVSWNSV 408



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 167/330 (50%), Gaps = 8/330 (2%)

Query: 38  SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
           S  Q  K  ++M   G  +    +  +L+A  +        ++HA ++K C      +  
Sbjct: 418 SVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGN 477

Query: 98  RLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
            L+  Y KC  +++  K+F  M E R+ VSW +MIS Y       +A++L   M++    
Sbjct: 478 ALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR 537

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
            + FTFAT+L++CA     E G ++H+  I++  ES + VGS+L+DMY+K GRI  A   
Sbjct: 538 LDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRF 597

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           FE +P R+V S  ++ISGYA+ G  E+A++LF ++ ++G   ++VT+  VL+A S +  +
Sbjct: 598 FELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFV 657

Query: 277 GHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLV 334
             G +   S    + +   V   + ++D+  + G L       ++M  +  V+ W  +L 
Sbjct: 658 EEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLG 717

Query: 335 GYSKHG-----MGREVVELFNLMREENKVK 359
              +       +GR   E+   +  +N V 
Sbjct: 718 ACCRANGRNTELGRRAAEMLLELEPQNAVN 747


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 333/545 (61%), Gaps = 33/545 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +IV +     + +A K+FDEM E+++V+W+A+I+ + Q     EA+  F+ M +     +
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR---- 214
           E    + L++CA      +GK IHSL +K   ES+I + ++L+ MY+K G I  AR    
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300

Query: 215 ---------------------------GVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
                                       +F+ +PE+DVVS +++ISGYAQ  L +E + L
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F+++Q+ G   +  T  SV++A + LAAL  GK VH+++ R  +   V+L  +LIDMY K
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK 420

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG +  +  VF  M E+ + +WNA+++G + +G+    +++F+ M++ + V P+ +T++ 
Sbjct: 421 CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCH-VTPNEITFMG 479

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VL  C H G+ D G   F+ ++      +P ++HYGC+VD+LGRAG++ EA E +  MP 
Sbjct: 480 VLGACRHMGLVDEGQHHFYSMIH-DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPM 538

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
            P  A  G+LLGAC+ H + ++G  VG++L+E++P++ G +V+LSN+YAS G+W+DV  +
Sbjct: 539 TPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEI 598

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R +M +  V K PG S IE + ++H F A D++HP  + +   + ++++K K  GY PD+
Sbjct: 599 RGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDI 658

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           + VL DVDEE+KE  L  HSEKLA+ FGLI      PIR++KNLRIC DCH  AK +SK 
Sbjct: 659 NEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKA 718

Query: 608 YGRKV 612
           + RK+
Sbjct: 719 FCRKI 723



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 172/338 (50%), Gaps = 46/338 (13%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L+ AC  +R+    ++VH H++K  +   VY+R  LI  ++ C  ++DA ++F+E  
Sbjct: 81  YPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESS 140

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             + VSW ++++ Y +  +  EA +++ +M      P                       
Sbjct: 141 VLDSVSWNSILAGYIEIGNVEEAKHIYHQM------P----------------------- 171

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
                     E  I   +S++ ++   G + EA  +F+ + E+D+V+ +A+I+ + Q  +
Sbjct: 172 ----------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 221

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EEAI  F  +   G++ + V   S L+A + L  +  GK +HS  L+    SY+ LQN+
Sbjct: 222 YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNA 281

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           LI MYSKCG +  +R++FD      +ISWN+M+ GY K  +      +F+ M E+     
Sbjct: 282 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK----- 336

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           D V++ +++SG +   + D  LA+F E+     GF+P+
Sbjct: 337 DVVSWSSMISGYAQNDLFDETLALFQEMQ--MSGFKPD 372



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 25/354 (7%)

Query: 51  TLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLS 110
           +L L++  E Y  L NA +   +  G   V   +    Y   +     +I  Y KC  + 
Sbjct: 265 SLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVD 324

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           +A+ +FD M E++VVSW++MIS Y+Q     E L LF  M  S  +P+E T  +V+++CA
Sbjct: 325 NAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACA 384

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                E GK +H+ I ++    ++ +G++L+DMY K G +  A  VF  + E+ + +  A
Sbjct: 385 RLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNA 444

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-----VHSH 285
           +I G A  GL E ++++F  ++   +  N +T+  VL A   +  +  G+      +H H
Sbjct: 445 LILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 504

Query: 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---M 341
            ++  +  Y      ++D+  + G L  +  + + M     V +W A+L    KHG   M
Sbjct: 505 KIQPNVKHY----GCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560

Query: 342 GREVVELFNLMREENKVKPDSVTYLAVLSG--CSHGGMED----RGLAVFHEIV 389
           GR V       R+  +++PD   +  +LS    S G  +D    RG+   H ++
Sbjct: 561 GRRV------GRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVL 608



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 140/326 (42%), Gaps = 42/326 (12%)

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIH--EARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           ++ + F    Y  S L+        IH    R +F  +   +      +I  Y Q     
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 243 EAIELFRKLQVEGMISNYV-----TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297
            A  L++      M+SNY+     TY  ++ A S   +    KQVH+HVL+    S V +
Sbjct: 61  FAFTLYK-----SMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYV 115

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           +N+LI+ +S C ++T + RVF+  S    +SWN++L GY + G   E   +++ M E + 
Sbjct: 116 RNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI 175

Query: 358 VKPDSVTYL-----AVLSGCS-HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           +  +S+  L      V+  C     M ++ +  +  ++ C   F+          +M   
Sbjct: 176 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIAC---FQQN--------EMYEE 224

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471
           A R    +  I  M  E  A    S L AC     V++G+ +    ++I  E   +Y+ L
Sbjct: 225 AIRTFVGMHKIGVMVDEVVAV---SALSACANLLVVNMGKLIHSLSLKIGTE---SYINL 278

Query: 472 SN----LYASAGRWEDVTRVRELMKE 493
            N    +Y+  G   D+   R+L  E
Sbjct: 279 QNALIYMYSKCG---DIMVARKLFDE 301


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 343/574 (59%), Gaps = 45/574 (7%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LL A  + R+L  G ++H   I       +++ T L+  Y++C  ++ A+K+F+EM E N
Sbjct: 112 LLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPN 171

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           VV+W A+++A  +      A  +F RM  R+ T  N                        
Sbjct: 172 VVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWN------------------------ 207

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
                            +L  Y KAG +  AR +F  +P +D VS + +I G+A  G   
Sbjct: 208 ----------------VMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFY 251

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA   FR+LQ  GM  N V+    L+A +   A+  GK +H  + +      V + N+L+
Sbjct: 252 EAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALL 311

Query: 303 DMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           D YSKCG++  +R VF+ M E R+++SW +M+ G + HG G E ++LF+ M EE+ ++PD
Sbjct: 312 DTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEM-EESGIRPD 370

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            + ++++L  CSH G+ ++G   F+++ D  +  EP IEHYGC+VD+ GRAG++ +A EF
Sbjct: 371 GIAFISILYACSHAGLIEKGYEYFYKMKDIYN-IEPAIEHYGCMVDLYGRAGQLDKAYEF 429

Query: 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481
           I +MP  PTA I  +LLGAC +H NV + E V +RL E++P N+G++V+LSN+YA AG+W
Sbjct: 430 IIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKW 489

Query: 482 EDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK-E 540
           +DV  VR  M ++ + K PG S IE+D+I+++F A +  + + EE   K+K++ +K + E
Sbjct: 490 KDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVE 549

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNF 600
             Y+P++  VL+D+++E+KE  +  HSEKLA+ FG+    +G+ IR++KNLR+C DCH  
Sbjct: 550 GCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTV 609

Query: 601 AKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            K +SKVYG ++ +RD++RFH    G+CSC DYW
Sbjct: 610 MKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 143/349 (40%), Gaps = 75/349 (21%)

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA--GRIHEARGVFECL 220
           +++LT+C         KQ+H+ + K+  ++   +   LL   A +    +  AR +F   
Sbjct: 9   SSLLTNCRSLKNL---KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHF 65

Query: 221 PERDVVSCTAIISGYAQLGLDEEA----IELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           P  DV     +I G A+    + +    +E+ R+L       +  ++A +L A +   +L
Sbjct: 66  PNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAP---LDSFSFAFLLKAAASYRSL 122

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA----- 331
             G Q+H   +   + +++ +  +L+ MYS+CG + ++++VF+ M E  V++WNA     
Sbjct: 123 ESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTAC 182

Query: 332 --------------------------MLVGYSKHG---MGREVV---------------- 346
                                     ML GY+K G   + R++                 
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242

Query: 347 ---------ELFNLMREENKV--KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
                    E F   RE  +V  +P+ V+    LS C+  G  + G  + H  ++ K GF
Sbjct: 243 GFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFG-KILHGFIE-KSGF 300

Query: 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
              +     ++D   + G VG A    + MP + +     S++    +H
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 332/524 (63%), Gaps = 6/524 (1%)

Query: 113 RKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAG 171
           R +FD++ +     + ++I A    A S  AL ++ RMLR+ +  PN FT A  L +CA 
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPA-AGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTA 230
                 G+Q+H+  ++    +  YV + LL++YAK  ++  AR VF+ +  ++++V+ +A
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           ++SGY+++G+  EA+ LFR++Q  G+  + VT  SV++A +   AL  GK VH+++ R  
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           I   + L  +LIDMY+KCG +  +R VFD M E+   +W+AM+VG++ HG+  + + LF+
Sbjct: 308 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 367

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M E  KV+P++VT++ VLS C+H G+ + G   +  + +   G +P +E+YGC+VD+L 
Sbjct: 368 RMLEL-KVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL--GIKPSMENYGCMVDLLC 424

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R+G + +A  F+  MP  P + I  +LL AC+    +DI E   +RL+E+EP N  NYV+
Sbjct: 425 RSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVL 484

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSNLYAS  +W+ V+ +R  MK K VT   GRS IE++  LH F  SD SHP   E+   
Sbjct: 485 LSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLV 544

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           +++++ + + AG+ P  + VL+DV EE+KE  L  HSE+LA+ +GL+ T     IRV+KN
Sbjct: 545 LREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKN 604

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LR C+DCH  AK +SK Y R++ +RD+ RFH  + G+CSC D+W
Sbjct: 605 LRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 150/274 (54%), Gaps = 4/274 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERN 123
           L AC        G+++HA  ++       Y++T L+  Y KCE ++ AR +FD M  ++N
Sbjct: 182 LKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKN 241

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V+W+AM+S YS+     EAL LF  M     EP+E T  +V+++CA A   +LGK +H+
Sbjct: 242 LVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHA 301

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I +      + + ++L+DMYAK G I  ARGVF+ + E+D  + +A+I G+A  GL E+
Sbjct: 302 YIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVED 361

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ LF ++    +  N VT+  VL+A +    +  G++  S +    I   +     ++D
Sbjct: 362 ALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVD 421

Query: 304 MYSKCGSL--TYSRRVFDNMSERTVISWNAMLVG 335
           +  + G L   YS  +   +S  +VI W  +LV 
Sbjct: 422 LLCRSGLLDDAYSFVIGMPVSPNSVI-WRTLLVA 454



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           EM  +G+E       ++++AC     L  G+ VHA++ +      + L T LI  Y KC 
Sbjct: 267 EMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCG 326

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            +  AR +FD M E++  +W+AMI  ++      +AL LF RML     PN  TF  VL+
Sbjct: 327 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 386

Query: 168 SCAGAFGFELGKQIHSLI----IKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +CA +   E G++  S++    IK + E++      ++D+  ++G + +A
Sbjct: 387 ACAHSGLVEDGRRYWSIMQNLGIKPSMENY----GCMVDLLCRSGLLDDA 432


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 338/570 (59%), Gaps = 5/570 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++++AC      R G+ +HA++I T +   + +   L   Y       +A K+F  M  +
Sbjct: 302 SVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK 361

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++VSWT MIS Y       +A++ +  M +   +P+E T A VL++CA     + G ++H
Sbjct: 362 DIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELH 421

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
            L IK+   S++ V ++L++MY+K   I +A  +F  +P ++V+S T+II+G        
Sbjct: 422 KLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCF 481

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA+   R++++  +  N +T  + L A + + AL  GK++H+HVLR  +     L N+L+
Sbjct: 482 EALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALL 540

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY +CG +  +   F N  ++ V SWN +L GYS+ G G  VVELF+ M  +++V+PD 
Sbjct: 541 DMYVRCGRMNTAWSQF-NSQKKDVTSWNILLTGYSERGQGSMVVELFDRM-VKSRVRPDE 598

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           +T++++L GCS   M  +GL  F ++ D   G  P ++HY CVVD+LGRAG + EA +FI
Sbjct: 599 ITFISLLCGCSKSQMVRQGLMYFSKMEDY--GVTPNLKHYACVVDLLGRAGELQEAHKFI 656

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + MP  P  A+ G+LL ACR+H+ +D+GE   Q + E++ ++ G Y++L NLYA  G+W 
Sbjct: 657 QKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWR 716

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
           +V +VR +MKE  +T D G SW+E+   +H F + D+ HP  +E++  ++    K  E G
Sbjct: 717 EVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVG 776

Query: 543 YVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAK 602
                     D  E  ++++  GHSE+ A+ FGLI T  G PI V KNL +C +CH+  K
Sbjct: 777 LTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVK 836

Query: 603 FVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           F+SK   R++S+RD   FHH  +G CSCGD
Sbjct: 837 FISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 209/398 (52%), Gaps = 7/398 (1%)

Query: 33  LKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  LC+NG+L +A   L  M  L + +  + +  L+  C  +R    G +V++  + +  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V L    +  + +   L DA  +F +M ERN+ SW  ++  Y+++ +  EA+ L+ R
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           ML     +P+ +TF  VL +C G      GK++H  +++  +E  I V ++L+ MY K G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  AR +F+ +P RD++S  A+ISGY + G+  E +ELF  ++   +  + +T  SV++
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A   L     G+ +H++V+       + + NSL  MY   GS   + ++F  M  + ++S
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W  M+ GY  + +  + ++ + +M +++ VKPD +T  AVLS C+  G  D G+ + H++
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMM-DQDSVKPDEITVAAVLSACATLGDLDTGVEL-HKL 423

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              K      +     +++M  +   + +AL+   N+P
Sbjct: 424 A-IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 150/275 (54%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L  C     L  G+ VH H+++  Y   + +   LI  Y KC  +  AR +FD M 
Sbjct: 199 FPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+++SW AMIS Y +     E L LF  M     +P+  T  +V+++C       LG+ 
Sbjct: 259 RRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ +I + F   I V +SL  MY  AG   EA  +F  +  +D+VS T +ISGY    L
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFL 378

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            ++AI+ +R +  + +  + +T A+VL+A + L  L  G ++H   ++  + SYV++ N+
Sbjct: 379 PDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG 335
           LI+MYSKC  +  +  +F N+  + VISW +++ G
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAG 473


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/643 (35%), Positives = 361/643 (56%), Gaps = 72/643 (11%)

Query: 59  EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR--PPVYLRTRLIVFYNKCECLSDARKMF 116
           E + +LL+ C    +L+  +++HA + KT     P V+ +  L       + L  A ++F
Sbjct: 3   EAWVSLLSKC---SSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLF 59

Query: 117 DEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGF 175
                 +      +I + S       +L+ FI++ R  T  P+ FTFA  L + A +   
Sbjct: 60  HHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHL 119

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE----------------- 218
             G Q+HS   +  F++HI+VG++L+ MYA+ G    AR VF+                 
Sbjct: 120 RPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAA 179

Query: 219 --------------CLPERDVVSCTAIISGYA---QLGL-----------DE-------- 242
                         C+P R++ S   +++GYA   +LGL           DE        
Sbjct: 180 FRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIV 239

Query: 243 ---------EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
                    EA   FR+L  E + +N V+   VL+A +   A   GK +H  V +     
Sbjct: 240 GFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLY 299

Query: 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLM 352
              + N+LID YSKCG++  +R VF NM   R+++SW +++ G + HG G E ++LF+ M
Sbjct: 300 VGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEM 359

Query: 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412
            EE+ V+PD +T++++L  CSH G+ + G  +F ++ +   G EP IEHYGC+VD+ GRA
Sbjct: 360 -EESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLY-GIEPAIEHYGCMVDLYGRA 417

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472
            R+ +A EFI  MP  P A I  +LLGAC +H N+++ E V  RL E++P+N+G++V+LS
Sbjct: 418 ARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLS 477

Query: 473 NLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVK 532
           N+YA AG+W+DV+ +R  M E ++ K PG S IE+D++++ F A ++ + + EE   K++
Sbjct: 478 NVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLR 537

Query: 533 QLSVKFK-EAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNL 591
           ++ ++ + EAGY P +  VL+D++EE+KE  +  HSEKLA  FG+   P+G  +R++KNL
Sbjct: 538 EIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNL 597

Query: 592 RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           R+C DCH   K +SKVY  ++ +RD++RFH   +G CSC DYW
Sbjct: 598 RVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 343/589 (58%), Gaps = 5/589 (0%)

Query: 44   KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
            K L E+  +G  M    + + L AC N   L   + VHA +I   +   + +   L+  Y
Sbjct: 485  KILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMY 544

Query: 104  NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTF 162
             K   + +A+K+   M + + V+W A+I  +++     EA+  + +++R    P N  T 
Sbjct: 545  GKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITM 603

Query: 163  ATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
             +VL +C+      + G  IH+ I+ + FES  YV +SL+ MYAK G ++ +  +F+ L 
Sbjct: 604  VSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG 663

Query: 222  ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
             +  ++  A+++  A  G  EEA+++F +++  G+  +  +++  L A + LA L  G+Q
Sbjct: 664  NKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQ 723

Query: 282  VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
            +H  V++    S + + N+ +DMY KCG +    ++      R+ +SWN ++  +++HG 
Sbjct: 724  LHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGC 783

Query: 342  GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401
             ++  E F+ M +    KPD VT++++LS C+HGG+ D GLA +  +   + G  P IEH
Sbjct: 784  FQKARETFHEMLKLGP-KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTR-EFGVFPGIEH 841

Query: 402  YGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461
              C++D+LGR+GR+  A  FIK MP  P      SLL ACR+H N+++     + L+E++
Sbjct: 842  CVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELD 901

Query: 462  PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSH 521
            P +   YV+ SN+ A++G+WEDV  +R+ M    + K P  SW++L   +H+F   ++ H
Sbjct: 902  PSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYH 961

Query: 522  PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581
            P    +SAK+ +L    KEAGYVPD S  L+D+DEEQKE  L  HSE+LAL FGLI TPE
Sbjct: 962  PQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPE 1021

Query: 582  GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
             + +R+ KNLR+C DCH+  KFVS + GRK+ LRD  RFHH   G CSC
Sbjct: 1022 SSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 160/279 (57%), Gaps = 1/279 (0%)

Query: 76  GGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135
            G+ +HA  I       ++    LI  Y+K   +  AR +FDEMR RN  SW+ M+S Y 
Sbjct: 112 AGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYV 171

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHI 194
           +     EA+ LF +M     EPN F  A+++T+C+   +  + G Q+H  ++K+     +
Sbjct: 172 RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDV 231

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254
           YVG++L+  Y   G ++ A+ +FE +P+ +VVS T+++ GY+  G   E + ++++++ E
Sbjct: 232 YVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 291

Query: 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           G+  N  T+A+V ++   L     G QV  H++++     V + NSLI M+S   S+  +
Sbjct: 292 GVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 351

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
             VFD+M+E  +ISWNAM+  Y+ HG+ RE +  F+ MR
Sbjct: 352 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 390



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 210/396 (53%), Gaps = 9/396 (2%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRG-GQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           +M  LG+E       +L+ AC     +   G +VH  ++KT     VY+ T L+ FY   
Sbjct: 185 QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 244

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
             + +A+K+F+EM + NVVSWT+++  YS   +  E LN++ RM +     N+ TFATV 
Sbjct: 245 GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVT 304

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           +SC       LG Q+   II+  FE  + V +SL+ M++    + EA  VF+ + E D++
Sbjct: 305 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 364

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           S  A+IS YA  GL  E++  F  ++     +N  T +S+L+  S +  L  G+ +H  V
Sbjct: 365 SWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLV 424

Query: 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346
           ++  + S V + N+L+ +YS+ G    +  VF  M+ER +ISWN+M+  Y + G   + +
Sbjct: 425 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 484

Query: 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGG--MEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
           ++   + +  KV  + VT+ + L+ CS+    +E +   + H ++    GF   +     
Sbjct: 485 KILAELLQMGKVM-NHVTFASALAACSNPECLIESK---IVHALIIVA-GFHDFLIVGNA 539

Query: 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           +V M G+ G + EA + ++ MP +P      +L+G 
Sbjct: 540 LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG 574



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 40  GQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           G++      M   G+      + T+ ++C        G +V  H+I+  +   V +   L
Sbjct: 279 GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159
           I  ++    + +A  +FD M E +++SW AMISAY+      E+L  F  M     E N 
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            T +++L+ C+     + G+ IH L++K   +S++ + ++LL +Y++AGR  +A  VF+ 
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 458

Query: 220 LPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279
           + ERD++S  ++++ Y Q G   + +++  +L   G + N+VT+AS L A S    L   
Sbjct: 459 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 518

Query: 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339
           K VH+ ++      ++++ N+L+ MY K G +  +++V   M +   ++WNA++ G++++
Sbjct: 519 KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAEN 578

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMEDRGLAVFHEIVDCKDGFEPE 398
               E V+ + L+RE+  +  + +T ++VL  CS    +   G+ +   IV    GFE +
Sbjct: 579 EEPNEAVKAYKLIREKG-IPANYITMVSVLGACSAPDDLLKHGMPIHAHIV--LTGFESD 635

Query: 399 IEHYGCVVDMLGRAGRVGEA 418
                 ++ M  + G +  +
Sbjct: 636 DYVKNSLITMYAKCGDLNSS 655



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 167/357 (46%), Gaps = 47/357 (13%)

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GK +H+  I  +    I+  ++L++MY+K G I  AR VF+ +  R+  S + ++SGY +
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG-HGKQVHSHVLRFEIPSYVV 296
           +GL EEA+ LF ++   G+  N    AS++TA S    +   G QVH  V++  I   V 
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN 356
           +  +L+  Y   G +  ++++F+ M +  V+SW +++VGYS  G   EV+ ++  MR+E 
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDR--GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414
            V  +  T+  V S C  G +ED+  G  V   I+  + GFE  +     ++ M      
Sbjct: 293 -VSGNQNTFATVTSSC--GLLEDQVLGYQVLGHII--QYGFEDSVSVANSLISMFSSFSS 347

Query: 415 VGEALEFIKNM---PFEPTAAILGSLL--GACR-----VHY------------------- 445
           V EA     +M         A++ +    G CR      H+                   
Sbjct: 348 VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 407

Query: 446 -----NVDIGEFVGQRLMEIEPENAGNYVI---LSNLYASAGRWEDVTRVRELMKEK 494
                N+  G  +   ++++  ++  N  I   L  LY+ AGR ED   V + M E+
Sbjct: 408 CSSVDNLKWGRGIHGLVVKLGLDS--NVCICNTLLTLYSEAGRSEDAELVFQAMTER 462



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326
           L   S + +   GK +H+  +   +   +   N+LI+MYSK G++ ++R VFD M  R  
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG-MEDRGLAVF 385
            SW+ ML GY + G+  E V LF  M     V+P+     ++++ CS  G M D G  V 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACSRSGYMADEGFQVH 219

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
             +V  K G   ++     +V   G  G V  A +  + MP
Sbjct: 220 GFVV--KTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 258


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 340/602 (56%), Gaps = 34/602 (5%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +++AC     L  G++V+  +  +       + + L+  Y KC  +  A+++FDE    N
Sbjct: 241 VISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASN 300

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +    AM S Y ++  + EAL +   M+ S   P+  +  + ++SC+       GK  H 
Sbjct: 301 LDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHG 360

Query: 184 LIIKSNFESHIYVGSSLLDMYAKA-------------------------------GRIHE 212
            ++++ FES   + ++L+DMY K                                G +  
Sbjct: 361 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDA 420

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALS 271
           A   F  +PE+++VS   IIS   Q  + EEAIE+F  +Q +  ++ + VT  S+ +A  
Sbjct: 421 AWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACG 480

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
            L AL   K ++ ++ +  I   V L  +L+DM+S+CG    +  +F++++ R V +W A
Sbjct: 481 HLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTA 540

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
            +   +  G     +ELFN M E+  +KPD V ++  L+ C HGG+  +G  +F+ +   
Sbjct: 541 AIGAMAMAGNVERAIELFNEMIEQG-LKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKL 599

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
             G  PE  HYGC+VD+LGRAG + EAL+ IK+MP EP   I  SLL ACRV  NV++  
Sbjct: 600 H-GVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAA 658

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
           F  +++  + PE  G+YV+LSN+YASAGRW D+ +VR  MKEK + K PG S I++    
Sbjct: 659 FAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKT 718

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F + D SHP   ++ A + +LS +  + G+VPD+S VL DVDE++K  +L  HSEKLA
Sbjct: 719 HEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLA 778

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGLI + +G  IR++KNLR+C  CH+FAKF SKVY R++ LRD NRFH I +G CSC 
Sbjct: 779 MAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCS 838

Query: 632 DY 633
           D+
Sbjct: 839 DF 840



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 204/400 (51%), Gaps = 34/400 (8%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+ C   R    G ++H  +IK  Y   ++++  L+ FY +C  L  ARK+FDEM ERNV
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNV 199

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSWT+MI  Y+++  + +A++LF RM+R  D  PN  T   V+++CA     E G++++ 
Sbjct: 200 VSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD 259

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I  S  E +  + S+L+DMY K   I  A+ +F+     ++  C A+ S Y + GL +E
Sbjct: 260 FIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKE 319

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ +   +   G+  + ++  S +++ S L  +  GK  H +VLR    S+  + N+LID
Sbjct: 320 ALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 379

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG----------------------- 340
           MY KC     + R+FD MS +TV++WN+++ GY ++G                       
Sbjct: 380 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTI 439

Query: 341 --------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
                   M  E +E+F+ M+ +  V  D VT +++ S C H G  D    +++ I   K
Sbjct: 440 ISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIE--K 497

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           +  + ++     +VDM  R G    A+    ++     +A
Sbjct: 498 NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 537



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 172/321 (53%), Gaps = 5/321 (1%)

Query: 107 ECLSDARKMFDEMRERNVV-SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
           E LS A+++F+          + ++I  Y+      EA+ LFIRM+ S   P+++TF   
Sbjct: 80  ESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFG 139

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDV 225
           L+ CA +     G QIH LIIK ++   ++V +SL+  YA+ G +  AR VF+ + ER+V
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNV 199

Query: 226 VSCTAIISGYAQLGLDEEAIEL-FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHS 284
           VS T++I GYA+    ++A++L FR ++ E +I N VT   V++A + L  L  G++V+ 
Sbjct: 200 VSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD 259

Query: 285 HVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344
            +    I    ++ ++L+DMY KC ++  ++R+FD      +   NAM   Y + G+ +E
Sbjct: 260 FIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKE 319

Query: 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404
            + + NLM +   ++PD ++ L+ +S CS       G +    ++  ++GFE        
Sbjct: 320 ALGVLNLMMDSG-IRPDRISMLSAISSCSQLRNILWGKSCHGYVL--RNGFESWDNICNA 376

Query: 405 VVDMLGRAGRVGEALEFIKNM 425
           ++DM  +  R   A      M
Sbjct: 377 LIDMYMKCHRQDTAFRIFDRM 397



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++ +AC +   L   + ++ ++ K   +  V L T L+  +++C     A  +F+ +  R
Sbjct: 474 SIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 533

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           +V +WTA I A +   +   A+ LF  M+    +P+   F   LT+C      + GK+I 
Sbjct: 534 DVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIF 593

Query: 183 SLIIKSNFES--HIYVGSSLLDMYAKAGRIHEARGVFECLP 221
           + + K +  S   ++ G  ++D+  +AG + EA  + + +P
Sbjct: 594 NSMEKLHGVSPEDVHYG-CMVDLLGRAGLLEEALQLIKDMP 633


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 328/558 (58%), Gaps = 34/558 (6%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           L +AR++  +  ERNVVSWT++I+ YS+     +A+  F  ML     P+E      L++
Sbjct: 187 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSA 246

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL-----PE- 222
           C+     +LG+ +H L+ +        +  +L+DMYAK G I +A+ VF+ +     PE 
Sbjct: 247 CSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEP 306

Query: 223 --------------------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
                                     RDV++  ++I+GY   G   +A++LF +++  GM
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366

Query: 257 ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316
            ++  T  S+LTA + L AL HG+ +H+ + +  +   V L  +L+DMY KCG +  +  
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426

Query: 317 VFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376
           VF  M ER V +W AM+ G + +GMG++ +E F  M+ +   +P SVTY+AVL+ CSH  
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDG-FQPTSVTYIAVLTACSHSS 485

Query: 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS 436
           + D G   F+E+        P++EHYGC++D+L R+G + EA+  ++ MP +P A I GS
Sbjct: 486 LLDEGRLHFNEMRSLHK-LHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544

Query: 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           +L ACRVH N+D+     + L+++ PE    YV L N+Y  + +W D  RVR LM+E+ V
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV 604

Query: 497 TKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDE 556
            K  G S I +   +H F A+D+SHP   E+ A +++++ + K  GY P  S +  DVDE
Sbjct: 605 KKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDE 664

Query: 557 EQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRD 616
           E+KE+ LL HSEK+A+ FGLI  P   PI ++KNLR+C DCH+  K VS+++ R++ +RD
Sbjct: 665 EEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRD 724

Query: 617 KNRFHHIVEGTCSCGDYW 634
           ++RFHH  +G CSC D+W
Sbjct: 725 RSRFHHFRDGACSCNDFW 742



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 143/267 (53%), Gaps = 8/267 (2%)

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +I  Y K   +  AR +FD+M  R+V+++ +MI+ Y       +AL LF++M R     +
Sbjct: 310 IIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRAD 369

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            FT  ++LT+CA       G+ +H+ I +   E  +Y+G++LLDMY K GR+ EA  VF 
Sbjct: 370 NFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFH 429

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            + ERDV + TA+I+G A  G+ ++A+E F +++ +G     VTY +VLTA S  + L  
Sbjct: 430 RMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDE 489

Query: 279 GKQVHSHVLR--FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVG 335
           G+ +H + +R   ++   V     +ID+ ++ G L  +  +   M  +   + W ++L  
Sbjct: 490 GR-LHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSA 548

Query: 336 YSKH---GMGREVVE-LFNLMREENKV 358
              H    + R   E L  L  EE+ V
Sbjct: 549 CRVHKNIDLARHAAEHLLKLAPEEDAV 575



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 35/262 (13%)

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           V ++++    + G + EAR +    PER+VVS T++I+GY++ G   +A+  F  +  +G
Sbjct: 173 VWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDG 232

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--- 312
           +  + V     L+A S L  L  G+ +H  V +  I     L  +LIDMY+KCG +    
Sbjct: 233 VAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQ 292

Query: 313 -----------------------------YSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
                                         +R +FD M  R VI++N+M+ GY   G  R
Sbjct: 293 AVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLR 352

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
           + ++LF  MR    ++ D+ T +++L+ C+  G    G A+   I   +   E ++    
Sbjct: 353 DALQLFMQMRRHG-MRADNFTVVSLLTACASLGALPHGRALHASIE--QRIVEEDVYLGT 409

Query: 404 CVVDMLGRAGRVGEALEFIKNM 425
            ++DM  + GRV EA      M
Sbjct: 410 ALLDMYMKCGRVDEATAVFHRM 431



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 122/273 (44%), Gaps = 43/273 (15%)

Query: 39  NGQLTKAL---IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +G+L  AL   ++M   G+        +LL AC +   L  G+ +HA + +      VYL
Sbjct: 348 SGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYL 407

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            T L+  Y KC  + +A  +F  M ER+V +WTAMI+  +      +AL  F +M R   
Sbjct: 408 GTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGF 467

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIH--EA 213
           +P   T+  VLT+C                      SH    SSLLD     GR+H  E 
Sbjct: 468 QPTSVTYIAVLTAC----------------------SH----SSLLD----EGRLHFNEM 497

Query: 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
           R + +  P+ +   C  +I   A+ GL +EA+ L   +Q   M  N V + S+L+A    
Sbjct: 498 RSLHKLHPQVEHYGC--MIDLLARSGLLDEAMHL---VQTMPMQPNAVIWGSILSACRVH 552

Query: 274 AALGHGKQVHSHVLRF---EIPSYVVLQNSLID 303
             +   +    H+L+    E   YV L N  ID
Sbjct: 553 KNIDLARHAAEHLLKLAPEEDAVYVQLYNIYID 585


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 349/565 (61%), Gaps = 14/565 (2%)

Query: 78  QRVHAHMIKTCYRPPV----YLRTRLIVF--YNKCECLSDARKMFDEMRERNVVSWTAMI 131
           +++HA ++   + PP+    +L ++++ F   +       ARK+F ++    + ++ ++I
Sbjct: 5   RQIHARILT--HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVI 62

Query: 132 -SAYSQKAHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189
                 K  S E ++LF  M+ +    PN FT A VL +C+     E GKQIH+ I++S 
Sbjct: 63  RGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSG 122

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F S  YV SSL++ Y+K   I  AR VF+ + ER++V  +A++SGYA+LG+  EA+ +FR
Sbjct: 123 FSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFR 182

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
           ++QV G+  + V+   VL+A + + AL  GK VH+++ +  I   + L  +LI+MY+KCG
Sbjct: 183 EMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCG 242

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  +R +FD M  +   +W++M+VG + HG+  + + +F+ M EE + KP+ VT++ +L
Sbjct: 243 CIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRM-EEAQAKPNHVTFIGIL 301

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           S C+HGG+   G   +  +++   G EP +EHYGC+VD+L R G + EA +F   +P  P
Sbjct: 302 SACAHGGLVSDGKRYWSSMLEL--GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TP 358

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
              I  +LL A   +  +   E V  +L+E+EP  A NY+IL+NLYAS  + E V+ VR+
Sbjct: 359 DPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRK 418

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           +MKE  +   PG + IE+D  +H F   D SHP  EE+   ++ +++K   +GY P +S 
Sbjct: 419 MMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSV 478

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           VL+ V++E+KE VL  HSE+LA+ +GL+ T   A IR++KNLR+C DCH   K +SK+Y 
Sbjct: 479 VLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYD 538

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R++ +RD+ RFH  V GTCSC DYW
Sbjct: 539 REIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 156/278 (56%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L AC     L  G+++HA ++++ +    Y+++ L+ FY+KCE ++ ARK+FDE+ ERN
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +V W+AM+S Y++     EAL +F  M     EP+E +   VL++CA     ++GK +H+
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHA 217

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I K      + + ++L++MYAK G I +AR +F+ +  +D  + +++I G A  GL E+
Sbjct: 218 YIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAED 277

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+ +F +++      N+VT+  +L+A +    +  GK+  S +L   I   +     ++D
Sbjct: 278 ALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVD 337

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341
           +  + G +  +      +     + W  +LV Y+K+ M
Sbjct: 338 LLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNRM 375



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 5/248 (2%)

Query: 40  GQLTKALI---EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96
           G + +ALI   EM  +G+E        +L+AC     L  G+ VHA++ K      + L 
Sbjct: 172 GMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELN 231

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T LI  Y KC C+  AR++FDEMR ++  +W++MI   +    + +ALN+F RM  +  +
Sbjct: 232 TALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAK 291

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PN  TF  +L++CA       GK+  S +++   E  +     ++D+  + G I EA   
Sbjct: 292 PNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDF 351

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQVEGMIS-NYVTYASVLTALSGLA 274
              +P  D V    ++  Y +  + ++A  +  K L++E   + NY+  A++  ++S L 
Sbjct: 352 ALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLE 411

Query: 275 ALGHGKQV 282
            + H +++
Sbjct: 412 KVSHVRKM 419


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 337/584 (57%), Gaps = 10/584 (1%)

Query: 54  LEMRFEEYDTLLNAC--VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           L+     Y T+L +C  +    L  G+ +H H I   +   + ++  LI  Y KC     
Sbjct: 25  LQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKF 84

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +FD+M  +N++S+T+MI AY+  A   EA  L+ +ML     P+ + +A  L  C  
Sbjct: 85  AAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPT 144

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGS-SLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                 G+ IH  +   N E    V S +L+ MY + GRI  A+ VF+ +  +D+ S   
Sbjct: 145 ---IREGEAIH--VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNN 199

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+ +A+     +AI L+ +++   +  N  TY SVL A S L AL  GK++H  V   +
Sbjct: 200 MIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGD 259

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
            P+ V    +L++MY+KCGS   +R VF++   + V +W +++  YS+ G  +  +E + 
Sbjct: 260 QPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQ 319

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M  E  V PD VT+ A+ + CSH G+ D GL  F  + +      P   HY C++D+LG
Sbjct: 320 RMNCEG-VIPDDVTFTAIFNACSHSGLPDEGLLYFRAMRE-DHWIVPLQPHYTCMIDLLG 377

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R GR+ EA E ++ MP+ P       LL AC+V+ ++ IG    +R+ E+ P ++G Y++
Sbjct: 378 RVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLL 437

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           + N+YA AG+W DV  V++++K++ + K PG+S IE  + +H F   D +HP+ +E+ A+
Sbjct: 438 MGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRAR 497

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           ++++  +   AGY PD   VL DV+EE K ++LL HSE++AL  GL+ +  GA + ++KN
Sbjct: 498 LQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKN 557

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LRIC DCH+F K VSK+  RKV +RD +RFH    G+CSCGDYW
Sbjct: 558 LRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 152/291 (52%), Gaps = 11/291 (3%)

Query: 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKS 188
           + AY +     +AL LF + +  + + N+ T+ TVL SCA  G    E GK+IH   I  
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
            F + + V +SL+ MYAK G    A GVF+ +  ++++S T++I  Y       EA EL+
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
           +K+  EG++ +   YA+   AL+    +  G+ +H  +   E  +  V  N+L+ MY + 
Sbjct: 121 KKMLSEGIMPDIYAYAA---ALAVCPTIREGEAIHVKLGNHERRT-PVCSNALVGMYGRF 176

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  ++ VFD +  + + S+N M+  ++K+  G + + L+  M   N ++P+  TY +V
Sbjct: 177 GRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRN-LEPNLWTYTSV 235

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEA 418
           L  CS  G    G  +  ++   K G +P ++ +   +V+M  + G   EA
Sbjct: 236 LDACSKLGALTEGKEIHKKV---KGGDQPTDVAYNTALVNMYAKCGSAHEA 283



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 14/196 (7%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           IEM    LE     Y ++L+AC     L  G+ +H  +        V   T L+  Y KC
Sbjct: 218 IEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKC 277

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
               +AR +F++   +NV +WT+++SAYSQ   S   L  + RM      P++ TF  + 
Sbjct: 278 GSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIF 337

Query: 167 TSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            +C+       G   F   ++ H ++     + H    + ++D+  + GR+ EA  +   
Sbjct: 338 NACSHSGLPDEGLLYFRAMREDHWIV---PLQPHY---TCMIDLLGRVGRLREAEELVRT 391

Query: 220 LP-ERDVVSCTAIISG 234
           +P   DVV+ T ++S 
Sbjct: 392 MPYSPDVVTWTILLSA 407


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 341/573 (59%), Gaps = 3/573 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L AC + R L   + ++ +M+K  +     +R  LI  Y KC  +  AR +F+ M  +
Sbjct: 312 SVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECK 371

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VSW ++IS Y Q     EA+ LF  M+  + + +  T+  +++        + GK +H
Sbjct: 372 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH 431

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           S  IKS     + V ++L+DMYAK G + ++  +F  +   D V+   +IS   + G   
Sbjct: 432 SNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFA 491

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
             +++  +++   ++ +  T+   L   + LAA   GK++H  +LRF   S + + N+LI
Sbjct: 492 TGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALI 551

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           +MYSKCG L  S RVF+ MS R V++W  M+  Y  +G G + +E F  M E++ + PDS
Sbjct: 552 EMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADM-EKSGIVPDS 610

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           V ++A++  CSH G+ D GLA F E +      +P IEHY CVVD+L R+ ++ +A EFI
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACF-EKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFI 669

Query: 423 KNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482
           + MP +P A+I  S+L ACR   +++  E V +R++E+ P++ G  ++ SN YA+  +W+
Sbjct: 670 QAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWD 729

Query: 483 DVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAG 542
            V+ +R+ +K+K +TK+PG SWIE+ + +H F + D S P  E +   ++ L     + G
Sbjct: 730 KVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEG 789

Query: 543 YVPDMSCVLYDV-DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFA 601
           Y+PD   V  ++ +EE+K +++ GHSE+LA+ FGL+ T  G P++V+KNLR+C DCH   
Sbjct: 790 YIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVT 849

Query: 602 KFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           K +SK+ GR++ +RD NRFH   +GTCSC D W
Sbjct: 850 KLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 197/369 (53%), Gaps = 8/369 (2%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERN 123
           L++  N   LR   R+HA +I        +   +LI  Y+     + +  +F  +   +N
Sbjct: 14  LSSSSNLNELR---RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKN 70

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           V  W ++I A+S+     EAL  + ++  S   P+++TF +V+ +CAG F  E+G  ++ 
Sbjct: 71  VYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYE 130

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
            I+   FES ++VG++L+DMY++ G +  AR VF+ +P RD+VS  ++ISGY+  G  EE
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           A+E++ +L+   ++ +  T +SVL A   L  +  G+ +H   L+  + S VV+ N L+ 
Sbjct: 191 ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVA 250

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY K    T +RRVFD M  R  +S+N M+ GY K  M  E V +F  +   ++ KPD +
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--LENLDQFKPDLL 308

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423
           T  +VL  C H  + D  LA +      K GF  E      ++D+  + G +  A +   
Sbjct: 309 TVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFN 366

Query: 424 NMPFEPTAA 432
           +M  + T +
Sbjct: 367 SMECKDTVS 375



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 213/427 (49%), Gaps = 35/427 (8%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           + +++ AC        G  V+  ++   +   +++   L+  Y++   L+ AR++FDEM 
Sbjct: 109 FPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMP 168

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R++VSW ++IS YS   +  EAL ++  +  S   P+ FT ++VL +       + G+ 
Sbjct: 169 VRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQG 228

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           +H   +KS   S + V + L+ MY K  R  +AR VF+ +  RD VS   +I GY +L +
Sbjct: 229 LHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEM 288

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            EE++ +F +  ++    + +T +SVL A   L  L   K +++++L+        ++N 
Sbjct: 289 VEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNI 347

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM--REENKV 358
           LID+Y+KCG +  +R VF++M  +  +SWN+++ GY + G   E ++LF +M   EE   
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--- 404

Query: 359 KPDSVTYLAVLSGCSH-------GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411
           + D +TYL ++S  +         G+   G+         K G   ++     ++DM  +
Sbjct: 405 QADHITYLMLISVSTRLADLKFGKGLHSNGI---------KSGICIDLSVSNALIDMYAK 455

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG-------QRLMEIEPEN 464
            G VG++L+   +M    T     +++ AC     V  G+F          R  E+ P+ 
Sbjct: 456 CGEVGDSLKIFSSMGTGDTVT-WNTVISAC-----VRFGDFATGLQVTTQMRKSEVVPDM 509

Query: 465 AGNYVIL 471
           A   V L
Sbjct: 510 ATFLVTL 516



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 188/353 (53%), Gaps = 8/353 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L A  N   ++ GQ +H   +K+     V +   L+  Y K    +DAR++FDEM  R
Sbjct: 212 SVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVR 271

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + VS+  MI  Y +     E++ +F+  L    +P+  T ++VL +C       L K I+
Sbjct: 272 DSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIY 330

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
           + ++K+ F     V + L+D+YAK G +  AR VF  +  +D VS  +IISGY Q G   
Sbjct: 331 NYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLM 390

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           EA++LF+ + +    ++++TY  +++  + LA L  GK +HS+ ++  I   + + N+LI
Sbjct: 391 EAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALI 450

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMY+KCG +  S ++F +M     ++WN ++    + G     +++   MR +++V PD 
Sbjct: 451 DMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR-KSEVVPDM 509

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDC--KDGFEPEIEHYGCVVDMLGRAG 413
            T+L  L  C+    +  G     EI  C  + G+E E++    +++M  + G
Sbjct: 510 ATFLVTLPMCASLAAKRLG----KEIHCCLLRFGYESELQIGNALIEMYSKCG 558



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 112/211 (53%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y  L++       L+ G+ +H++ IK+     + +   LI  Y KC  + D+ K+F  M 
Sbjct: 411 YLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG 470

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             + V+W  +ISA  +       L +  +M +S+  P+  TF   L  CA      LGK+
Sbjct: 471 TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKE 530

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH  +++  +ES + +G++L++MY+K G +  +  VFE +  RDVV+ T +I  Y   G 
Sbjct: 531 IHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGE 590

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALS 271
            E+A+E F  ++  G++ + V + +++ A S
Sbjct: 591 GEKALETFADMEKSGIVPDSVVFIAIIYACS 621



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVI 327
           ALS  + L   +++H+ V+   + S       LID YS       S  VF  +S  + V 
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVY 72

Query: 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHE 387
            WN+++  +SK+G+  E +E +  +R E+KV PD  T+ +V+  C+     + G  V+ +
Sbjct: 73  LWNSIIRAFSKNGLFPEALEFYGKLR-ESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131

Query: 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
           I+D   GFE ++     +VDM  R G +  A +    MP
Sbjct: 132 ILDM--GFESDLFVGNALVDMYSRMGLLTRARQVFDEMP 168


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/630 (35%), Positives = 360/630 (57%), Gaps = 40/630 (6%)

Query: 42  LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY---RPPVYLRTR 98
           L K++  + +  LE+    Y  L+  C     +   +R+H+H++   +   +PP +L   
Sbjct: 44  LHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPP-FLANL 102

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           LI  Y KC  L  AR++F+ M  RNV +WT  ++A+S      EAL  F RM +S   P+
Sbjct: 103 LIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPD 162

Query: 159 EFTFATVL--TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
             TF+ +L   +  GA   + G++IH     S    ++ VG++++ MY K GR+ +AR  
Sbjct: 163 RVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAA 222

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ------VEGMISNYV--------- 261
           FE L  ++ V+  A+++ Y   G D EA+ELFR++          MI+ Y          
Sbjct: 223 FEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQAL 282

Query: 262 -----------------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304
                            T+ +V+   + L+AL  G+ +H+ V      + +++ N+L+ M
Sbjct: 283 DLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHM 342

Query: 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364
           Y KCG L  +  VF +M  +  ISWN ++  Y+ HG   + + L+  M +   VKP  VT
Sbjct: 343 YGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEM-DLQGVKPTEVT 401

Query: 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ +LS CSHGG+   GL  F+ + D     +P + H+GC++D+LGR GR+ EA   +K+
Sbjct: 402 FVGLLSACSHGGLVADGLDYFYRMQD-DHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKS 460

Query: 425 MPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484
           MP +  A    SLLGAC+ H ++  G     ++++  P  +G YV+LSN+YA+AGRW+DV
Sbjct: 461 MPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDV 520

Query: 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYV 544
            ++R++M  + V K PG+SWIE+  ++H F + D SHP  EE+  ++ ++  + K  GYV
Sbjct: 521 EKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYV 580

Query: 545 PDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFV 604
           PD S V +D++EE+KE +L+ HSEKLA+ +G +  P  + +R++KNLR+C+DCH   KF+
Sbjct: 581 PDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFM 640

Query: 605 SKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           S++ GRK+ +RD  RFH    G+CSC DYW
Sbjct: 641 SRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 149/281 (53%), Gaps = 16/281 (5%)

Query: 137 KAHSF---EALNLFIRMLRS-DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK---SN 189
           +A+SF   E+L+  I++L S + E +   +A ++  C  A      +++HS I+    SN
Sbjct: 34  RANSFGERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSN 93

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
            +   ++ + L++MY K GR+  AR +FE +P R+V + T  ++ ++  G   EA+  FR
Sbjct: 94  SQP-PFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFR 152

Query: 250 KLQVEGMISNYVTYASVLTALSGLAA--LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           ++   G   + VT++ +L A++ + A  +  G+++H +     +   VV+  ++I MY K
Sbjct: 153 RMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGK 212

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
           CG L  +R  F+ +  +  ++WNAM+  Y   G  RE +ELF  M +      DSV + A
Sbjct: 213 CGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDA-----DSVCWNA 267

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           +++  +  G   + L ++  + D  D   P+   +  V+D+
Sbjct: 268 MIAAYAQHGRGKQALDLYRSMHDTTD-LAPKQGTFVTVIDV 307


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/483 (42%), Positives = 305/483 (63%), Gaps = 8/483 (1%)

Query: 157 PNEFTFATVLTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           P++  F   L +C GA     LGK IHS ++++  ES+  V ++L++MY KAG + EA  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS---NYVTYASVLTALSG 272
           VF  L  +D+VS TA++S Y++  L  EA++LFR++ + G+     +   +A +L A + 
Sbjct: 68  VFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACAT 127

Query: 273 LAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           L+A   G+  H  +      S   VL   +I+MY KCG+L  +  VFD MSER  ++W  
Sbjct: 128 LSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTT 187

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ GY+ HG   E + +F  M+++   KPD V+ L VLS CSH G+ ++G   F +I   
Sbjct: 188 IISGYAHHGHSEESLLMFWRMQQDGS-KPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK- 245

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           + G EP  +HYGC++D+LGR+G +  A   I+ MPF+ TA      L AC+VH + + G+
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGK 305

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
              ++++E+EP  A  YV LSN+YA+AG W+ V RVR  MK   + KDPGRS IE++  +
Sbjct: 306 RAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRV 364

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D+SHP   E+   ++ L+ + + +GYVPD   VL +V EEQKE++L  HSEKLA
Sbjct: 365 HEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLA 424

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+ TP G+ +R+IKNLR+C DCH  AKFVS++ GR++ +RD  RFHH  +G CSCG
Sbjct: 425 IAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHCSCG 484

Query: 632 DYW 634
           DYW
Sbjct: 485 DYW 487



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 138/282 (48%), Gaps = 7/282 (2%)

Query: 65  LNACVNQ-RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LNAC      LR G+ +H+ +++        + T L+  Y K  CL +A ++F  +  ++
Sbjct: 17  LNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKD 76

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRML---RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +VSWTA++SAYS++    EAL LF  M       T+P+   FA +L +CA       G+ 
Sbjct: 77  LVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRL 136

Query: 181 IHSLIIKSNFESHIYV-GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            H  I +  ++S   V G  +++MY K G +  A  VF+ + ERD V+ T IISGYA  G
Sbjct: 137 AHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHG 196

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQ 298
             EE++ +F ++Q +G   + V+   VL+  S    +  G      + + F +       
Sbjct: 197 HSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHY 256

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
             +ID+  + G L  +  +   M  + T ++W   L     H
Sbjct: 257 GCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVH 298



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL AC        G+  H  + +  Y      L   +I  Y KC  L  A ++FD M ER
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+WT +IS Y+   HS E+L +F RM +  ++P+  +   VL+ C+ A   E G    
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 183 SLIIKSNF-----ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            L I   F     E H      ++D+  ++G +  A  +   +P +      AI     +
Sbjct: 241 -LDITKEFGVEPGEKHY---GCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACK 296

Query: 238 LGLDEE----AIELFRKLQVEGMISNYVTYASVLTA 269
           +  D E    A E  + L++E + + YV+ +++  A
Sbjct: 297 VHSDTERGKRAAE--KVLELEPVPAAYVSLSNIYAA 330


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 343/593 (57%), Gaps = 24/593 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +LL+A      LR G+ +HAH+ +        +   LI FY+KC  +  AR++F+ +  R
Sbjct: 332 SLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLR 391

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA----GAFGFELG 178
           +++SW +M++ Y Q        ++F RM+ S  EP+  +   +  + +    G   F  G
Sbjct: 392 DIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRG 451

Query: 179 KQIHSLIIK--SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           K+IH  I++  +     + V +++L MYAK  RI +A  +F+ +  RD  S  A++ GY+
Sbjct: 452 KEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYS 511

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF----EIP 292
           +    E+ + +F  +  +G   ++V+ + +LT+   L +L  GKQ H+ V +     + P
Sbjct: 512 RNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCP 571

Query: 293 ---SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
              S + + N+LI MYSKCGS+  + +VF  M  + V SW AM+ G + HG+  E ++LF
Sbjct: 572 HQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLF 631

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409
             M+ +  +KP+ VT+LA+L  C+HGG+   G   F  + +   G  P IEHY C++D+ 
Sbjct: 632 ERMKTDG-IKPNQVTFLALLMACAHGGLVQEGSYYFDSMYN-DYGLSPSIEHYACMIDLF 689

Query: 410 GRAGRVGEA---LEFIKNMPFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
           GR+G+   A   +EF   + F+P       +   LLGAC     +D+G     +++E+EP
Sbjct: 690 GRSGQFDRAKSLVEFGITL-FKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEP 748

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           E+   Y++L+NLYAS+G WED  +VR+ M++K + K+ G SWI+     H F A D  HP
Sbjct: 749 EDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHP 808

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
            R+E+  K+ QL+   +  GYVP    VL+DVDE +KE +L  HSEKLA++FGL+    G
Sbjct: 809 QRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVG 868

Query: 583 -APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
              IRV+KNLR+C DCH++ KF S +  R++ LRD  RFH   +G+CSCGDYW
Sbjct: 869 NGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE--MRERNVVSWTAMISAYS 135
           +++H   I+T +     +R   I  Y++C  L DA+++FDE  +   +++ W ++I+AY 
Sbjct: 141 RQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYI 200

Query: 136 QKAHSFEALNLFIRMLRSDT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194
                 E L LF +M+      P E T+A+V+ +C  +   + G  +H  IIK+  E+  
Sbjct: 201 FHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEA-T 259

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK-LQV 253
            + +SL+  Y K G +  A  +FE +  +DVVS  A+I+   Q G  E A+ LFR+ L+V
Sbjct: 260 NLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKV 319

Query: 254 EGMIS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT 312
           E  +  N VT+ S+L+A+SGL+AL  G+++H+H+ R  +     + NSLI  YSKC  + 
Sbjct: 320 EPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVG 379

Query: 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +R +F+ +  R +ISWN+ML GY ++       ++F  M     ++PDS +   + +  
Sbjct: 380 KAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSG-IEPDSHSLTIIFNAA 438

Query: 373 SHGGMEDRGLAVF 385
           S    +  GL  F
Sbjct: 439 SR---DSSGLIYF 448



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 207/416 (49%), Gaps = 26/416 (6%)

Query: 41  QLTKALIEMATLGLEMRFE-EYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRL 99
           ++ +   +M ++G+    E  Y +++NAC +    + G  VH  +IK        L   L
Sbjct: 207 EVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLE-ATNLWNSL 265

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD--TEP 157
           + FY KC  L  A ++F+ +  ++VVSW AMI+A  Q+     AL LF RML+ +   +P
Sbjct: 266 VTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQP 325

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           N  TF ++L++ +G      G++IH+ I + + E    + +SL+  Y+K   + +AR +F
Sbjct: 326 NRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIF 385

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL----SGL 273
           E L  RD++S  ++++GY Q        ++F+++ + G+  +  +   +  A     SGL
Sbjct: 386 ERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGL 445

Query: 274 AALGHGKQVHSHVLRFEIPSYVVL--QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
                GK++H ++LR   P  V L   N+++ MY+K   +  + ++F  M  R   SWNA
Sbjct: 446 IYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNA 505

Query: 332 MLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV- 389
           M+ GYS++    +V+ +F +++++   +  D V+   +L+ C        G   FH +V 
Sbjct: 506 MMDGYSRNAKFEDVLMIFLDILKQGFPL--DHVSLSILLTSCGRLVSLQLG-KQFHAVVA 562

Query: 390 ------DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----FEPTAAILG 435
                 DC    +  +     ++ M  + G + +A +    M     F  TA I G
Sbjct: 563 KLFNGQDCPHQ-DSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITG 617



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 164/283 (57%), Gaps = 9/283 (3%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           ++ +V  ++ E L  A+++FD    R+V+SW+A+I+AYS+  +  +A  LF +M+    +
Sbjct: 59  SKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQ 118

Query: 157 PNEFTFATVL-TSCA-GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           PN F+ A++L  SC+ G  G  L +Q+H   I++ F     + ++ + MY++ G + +A+
Sbjct: 119 PNGFSLASLLKVSCSTGEIG--LCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQ 176

Query: 215 GVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS-NYVTYASVLTALS 271
            VF+   L   D++   +II+ Y   G   E + LF K+   G+++   +TYASV+ A  
Sbjct: 177 RVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACG 236

Query: 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
                 +G  VH  +++  + +   L NSL+  Y KCG+L ++ ++F+ +S + V+SWNA
Sbjct: 237 SSGEEKYGAMVHGRIIKAGLEA-TNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNA 295

Query: 332 MLVGYSKHGMGREVVELF-NLMREENKVKPDSVTYLAVLSGCS 373
           M+    + G G   + LF  +++ E  V+P+ VT+L++LS  S
Sbjct: 296 MIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVS 338



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 134/274 (48%), Gaps = 7/274 (2%)

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
           R+  A+ +F+  P RDV+S +A+I+ Y++ G   +A  LF+K+  EG+  N  + AS+L 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTV 326
                  +G  +Q+H   +R        ++ + I MYS+CG L  ++RVFD  S     +
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386
           + WN+++  Y  HG   EV+ LF  M     V P  +TY +V++ C   G E  G  V  
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHG 249

Query: 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYN 446
            I+  K G E     +  +V   G+ G +  A +  + +  +   +   +++ A      
Sbjct: 250 RII--KAGLEA-TNLWNSLVTFYGKCGNLQHASQLFERISRKDVVS-WNAMIAANEQRGE 305

Query: 447 VDIGEFVGQRLMEIEPENAGNYV-ILSNLYASAG 479
            +    + +R++++EP    N V  LS L A +G
Sbjct: 306 GENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSG 339


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/483 (42%), Positives = 305/483 (63%), Gaps = 8/483 (1%)

Query: 157 PNEFTFATVLTSCAGAFG-FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215
           P++  F   L +C GA     LGK IHS ++++  ES+  V ++L++MY KAG + EA  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS---NYVTYASVLTALSG 272
           VF  L  +D+VS TA++S Y++  L  EA++LFR++ + G+     +   +A +L A + 
Sbjct: 68  VFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACAT 127

Query: 273 LAALGHGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNA 331
           L+A   G+  H  +      S   VL   +I+MY KCG+L  +  VFD MSER  ++W  
Sbjct: 128 LSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTT 187

Query: 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391
           ++ GY+ HG   E + +F  M+++   KPD V+ L VLS CSH G+ ++G   F +I   
Sbjct: 188 IISGYAHHGHSEESLLMFWRMQQDGS-KPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK- 245

Query: 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGE 451
           + G EP  +HYGC++D+LGR+G +  A   I+ MPF+ TA      L AC+VH + + G+
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGK 305

Query: 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQIL 511
              ++++E+EP  A  YV LSN+YA+AG W+ V RVR  MK   + KDPGRS IE++  +
Sbjct: 306 RAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRV 364

Query: 512 HTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           H F A D+SHP   E+   ++ L+ + + +GYVPD   VL +V EEQKE++L  HSEKLA
Sbjct: 365 HEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLA 424

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + FGL+ TP G+ +R+IKNLR+C DCH  AKFVS++ GR++ +RD  RFHH  +G CSCG
Sbjct: 425 IAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHCSCG 484

Query: 632 DYW 634
           DYW
Sbjct: 485 DYW 487



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 138/282 (48%), Gaps = 7/282 (2%)

Query: 65  LNACVNQ-RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           LNAC      LR G+ +H+ +++        + T L+  Y K  CL +A ++F  +  ++
Sbjct: 17  LNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKD 76

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRML---RSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           +VSWTA++SAYS++    EAL LF  M       T+P+   FA +L +CA       G+ 
Sbjct: 77  LVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRL 136

Query: 181 IHSLIIKSNFESHIYV-GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            H  I +  ++S   V G  +++MY K G +  A  VF+ + ERD V+ T IISGYA  G
Sbjct: 137 AHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHG 196

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQ 298
             EE++ +F ++Q +G   + V+   VL+  S    +  G      + + F +       
Sbjct: 197 HSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHY 256

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKH 339
             +ID+  + G L  +  +   M  + T ++W   L     H
Sbjct: 257 GCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVH 298



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCY-RPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           LL AC        G+  H  + +  Y      L   +I  Y KC  L  A ++FD M ER
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           + V+WT +IS Y+   HS E+L +F RM +  ++P+  +   VL+ C+ A   E G    
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 183 SLIIKSNF-----ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
            L I   F     E H      ++D+  ++G +  A  +   +P +      AI     +
Sbjct: 241 -LDITKEFGVEPGEKHY---GCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACK 296

Query: 238 LGLDEE----AIELFRKLQVEGMISNYVTYASVLTA 269
           +  D E    A E  + L++E + + YV+ +++  A
Sbjct: 297 VHSDTERGKRAAE--KVLELEPVPAAYVSLSNIYAA 330


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 331/562 (58%), Gaps = 10/562 (1%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRL----IVFYNKCECLSDARKMFDEMRERNVVSWTAMISA 133
           +++HA +++T +     L T+L    +V  + C     AR++FDEM +  +  W  +   
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCY----ARQVFDEMHKPRIFLWNTLFKG 83

Query: 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH 193
           Y +    FE+L L+ +M      P+EFT+  V+ + +    F  G  +H+ ++K  F   
Sbjct: 84  YVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCL 143

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
             V + L+ MY K G +  A  +FE +  +D+V+  A ++   Q G    A+E F K+  
Sbjct: 144 GIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCA 203

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           + +  +  T  S+L+A   L +L  G++++    + EI   ++++N+ +DM+ KCG+   
Sbjct: 204 DAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEA 263

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R +F+ M +R V+SW+ M+VGY+ +G  RE + LF  M+ E  ++P+ VT+L VLS CS
Sbjct: 264 ARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEG-LRPNYVTFLGVLSACS 322

Query: 374 HGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAA 432
           H G+ + G   F  +V   D   EP  EHY C+VD+LGR+G + EA EFIK MP EP   
Sbjct: 323 HAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTG 382

Query: 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492
           I G+LLGAC VH ++ +G+ V   L+E  P+    +V+LSN+YA+AG+W+ V +VR  M+
Sbjct: 383 IWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMR 442

Query: 493 EKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLY 552
           +    K    S +E +  +H F+  D+SHP  + +  K+ ++  K ++ GYVPD   V +
Sbjct: 443 KLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFH 502

Query: 553 DVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKV 612
           DV+ E+KE  L  HSEKLA+ FGLI    G PIRV+KNLR C DCH F+KFVS +   ++
Sbjct: 503 DVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEI 562

Query: 613 SLRDKNRFHHIVEGTCSCGDYW 634
            +RDKNRFHH   G CSC ++W
Sbjct: 563 IMRDKNRFHHFRNGVCSCKEFW 584



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 13/330 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+      Y  ++ A         G  +HAH++K  +     + T L++ Y K  
Sbjct: 99  KMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFG 158

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            LS A  +F+ M+ +++V+W A ++   Q  +S  AL  F +M     + + FT  ++L+
Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +C      E+G++I+    K   + +I V ++ LDM+ K G    AR +FE + +R+VVS
Sbjct: 219 ACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVS 278

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            + +I GYA  G   EA+ LF  +Q EG+  NYVT+  VL+A S    +  GK+  S ++
Sbjct: 279 WSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338

Query: 288 RFEIPSYVVLQN---SLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG--- 340
           +    +    +     ++D+  + G L  +      M  E     W A+L   + H    
Sbjct: 339 QSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI 398

Query: 341 MGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +G++V ++        +  PD  +Y  +LS
Sbjct: 399 LGQKVADVL------VETAPDIGSYHVLLS 422


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/624 (33%), Positives = 348/624 (55%), Gaps = 41/624 (6%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100
           Q     +EM   G    F  Y ++L+AC +   L+ G  +HA +++  +   +     LI
Sbjct: 261 QCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLI 320

Query: 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160
             Y KC CL  A+++F  +RE + +SW ++I+         +AL LF +M RS    +EF
Sbjct: 321 DMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEF 380

Query: 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-------------- 206
              T+L  C+G      G+ +H   IKS   S   VG++++ MYAK              
Sbjct: 381 ILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLM 440

Query: 207 -----------------AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
                            +G I +ARG F+ +PER++V+  +++S Y Q G  EE ++L+ 
Sbjct: 441 PLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYV 500

Query: 250 KLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309
            ++  G+  +++T+ + + A + LA +  G QV +H  +F +   V + NS++ MYS+CG
Sbjct: 501 SMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCG 560

Query: 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369
            +  ++  FD++ ++ +ISWNAML  ++++G+G +V++ F  M +  + KP+ ++Y++VL
Sbjct: 561 LIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLK-TECKPNHISYVSVL 619

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           SGCSH G+   G   F  +     G  P  EH+ C+VD+LGRAG + +A + I+ MPF+P
Sbjct: 620 SGCSHMGLVAEGKHYFDSMTRVF-GISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKP 678

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489
            A +  +LLG+CRVH+++ + E   ++LME++ E +  YV+LSN+Y+ +G  ++V  +R+
Sbjct: 679 NATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRK 738

Query: 490 LMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549
           LMK K +    G SWIE+D  +H F   + SHP  +E+  K++++    ++ G       
Sbjct: 739 LMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGK------ 792

Query: 550 VLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
             Y   E    +    HSEKLA  FGL+  P   PI V+KNLR+C DCH   K +S V  
Sbjct: 793 --YITVESSVHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTS 850

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDY 633
           R++ +RD  RFHH  +G CSC DY
Sbjct: 851 RELIMRDGYRFHHFKDGICSCKDY 874



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 202/437 (46%), Gaps = 54/437 (12%)

Query: 109 LSDARKMFDEM--RERNVVSWTAMISAYSQK---AHSFEALNLFIRMLRSDTEP-NEFTF 162
           +SDA K+FDEM  R ++ VSWT MIS YSQ    + SFE  +L IR      +  + F+F
Sbjct: 90  MSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSF 149

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI------------ 210
            +V+ +C       L  Q+H+L+ K  F     + +S++ MY K G +            
Sbjct: 150 TSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIER 209

Query: 211 -------------------HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251
                              ++A  +F  +PERD VS   +IS ++Q G   + + +F ++
Sbjct: 210 PSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM 269

Query: 252 QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311
             +G   N++TY SVL+A +  + L  G  +H+ +LR E    +V  N LIDMY+KCG L
Sbjct: 270 CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCL 329

Query: 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV--TYLAVL 369
             ++RVF ++ E   ISWN+++ G    G+G + + LFN MR  + V  + +  T L V 
Sbjct: 330 DLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVC 389

Query: 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429
           SG  +    +    + H     K G          ++ M  + G   +A    + MP   
Sbjct: 390 SGPDYASTGE----LLHGYT-IKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRN 444

Query: 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVR 488
           T +    +    R   + DIG+  G    ++ PE N   +  + + Y   G  E+  ++ 
Sbjct: 445 TISWTAMITAFSR---SGDIGKARG--YFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLY 499

Query: 489 ELMKEKAVTKDPGRSWI 505
             M+   V  D    WI
Sbjct: 500 VSMRSNGVQPD----WI 512



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 171/360 (47%), Gaps = 34/360 (9%)

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
           RP ++    +I  Y++      A ++F+ M ER+ VSW  +IS +SQ     + L +F+ 
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVE 268

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M      PN  T+ +VL++CA     + G  +H+ I++      +  G+ L+DMYAK G 
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGC 328

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A+ VF+ L E D +S  ++I+G    GL E+A+ LF +++   ++ +     ++L  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC--------------------- 308
            SG      G+ +H + ++  + S   + N++I MY+KC                     
Sbjct: 389 CSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISW 448

Query: 309 ----------GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
                     G +  +R  FD M ER +++WN+ML  Y ++G   E ++L+  MR  N V
Sbjct: 449 TAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMR-SNGV 507

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +PD +T+   +  C+   +   G+ V       K G    +     +V M  R G + EA
Sbjct: 508 QPDWITFTTSIRACADLAIVKLGMQVVTHAT--KFGLSLNVSVANSIVTMYSRCGLIKEA 565



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 13/228 (5%)

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER--DVVSCTAIISGYAQLGLDE 242
           + +     +I+  ++++     + R+ +A  +F+ +P R  D VS T +ISGY+Q G   
Sbjct: 65  VFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHS 124

Query: 243 EAIELF----RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
            + E F    R     G   +  ++ SV+ A   L       Q+H+ V +        +Q
Sbjct: 125 RSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQ 184

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NS++ MY KCG +  +  VF ++   ++  WN+M+ GYS+     + +++FN M E    
Sbjct: 185 NSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPER--- 241

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
             D V++  ++S  S  G   + LA+F E+  C  GF P    YG V+
Sbjct: 242 --DEVSWNTLISIFSQHGFGVQCLAMFVEM--CNQGFSPNFMTYGSVL 285



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MYS CG    + +VF     R + +WN M+          +  +LF+ M    K   DSV
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVK---DSV 108

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIV-DCKDG---FEPEIEHYGCVVDMLGRAGRVGEAL 419
           ++  ++SG S  G   R    F  ++ D  DG   ++P    +  V+   G  G    A+
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDP--FSFTSVMKACGSLGDSRLAI 166

Query: 420 E---FIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453
           +    +  + F     I  S++G      +VD+ E V
Sbjct: 167 QLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETV 203


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 312/524 (59%), Gaps = 3/524 (0%)

Query: 111 DARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA 170
           DA ++F++M  RNV+SWT++I        SFEAL +F +ML S  +    T A  LT+CA
Sbjct: 192 DAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTACA 250

Query: 171 GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                 +G QIH LI+K+ +  + Y+ +SL+  YA    I  A  +F     R+VV  TA
Sbjct: 251 NICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTA 310

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +++GY       +A+++F+ +    ++ N  +  S L +  GL A+  G++VH+   +  
Sbjct: 311 LLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLG 370

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
           + S + + NSL+ MY+KCG +     VF  MS + V+SWN+++VG ++HG GR  + LF 
Sbjct: 371 LESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFA 430

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M    +V PD +T   +LS C H GM  +G   F        G E   EHY  +VD+LG
Sbjct: 431 QMIR-TRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGK-NFGIEMTNEHYSSMVDLLG 488

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R G++ EA   I  MP +    +  +LL +   H NV + E   + +++++P  +  Y +
Sbjct: 489 RYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTL 548

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           LSNLYAS G+W +V+++R+ MK++ + K PG SWI +  I H F + D+SHP+  ++  K
Sbjct: 549 LSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQK 608

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           ++ L  K KE GYVPD     +DV+ EQKE++L  HSE+LA+ FGLI T EG+ I V+KN
Sbjct: 609 LEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKN 668

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LRIC DCHN  K  SKV GR++ +RD +RFHH   GTCSCGDYW
Sbjct: 669 LRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 2/277 (0%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L AC N  T   G ++H  ++KT Y    Y+   LI FY  C+ + +A  +F++   RNV
Sbjct: 246 LTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNV 305

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           V WTA+++ Y       +AL +F  M+R    PN+ +  + L SC G    + G+++H++
Sbjct: 306 VVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAV 365

Query: 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244
             K   ES I+V +SL+ MY K G I++   VF  +  ++VVS  +II G AQ G    A
Sbjct: 366 AHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWA 425

Query: 245 IELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLID 303
           + LF ++    +  + +T A +L+A      L  G+    H  + F I       +S++D
Sbjct: 426 LTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVD 485

Query: 304 MYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
           +  + G L  +  +   M  +   + W A+L     H
Sbjct: 486 LLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINH 522



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 161/355 (45%), Gaps = 15/355 (4%)

Query: 91  PPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM 150
           P V L T +I  Y     L DA K+F EM  ++++SW +M+    +      A N+F +M
Sbjct: 79  PGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKM 138

Query: 151 LRSDTEPNEFTFATVLTSCAGAFGFELGK-QIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
               +E N  ++ T++         E G+ ++   + +      +   +S++  +   GR
Sbjct: 139 ----SERNVVSWTTIINGL-----LEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGR 189

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           + +A  +FE +P R+V+S T++I G    G   EA+ +F K+ +    +   T A  LTA
Sbjct: 190 VEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-LASFKATSSTLACALTA 248

Query: 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
            + +     G Q+H  +++        +  SLI  Y+ C  +  +  +F++   R V+ W
Sbjct: 249 CANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVW 308

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
            A+L GY  +    + +++F  M   + V P+  +  + L+ C      DRG  V H + 
Sbjct: 309 TALLTGYGLNCRHTDALQVFKGMMRMS-VLPNQSSLTSALNSCCGLEAVDRGREV-HAVA 366

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
             K G E +I     +V M  + G + + +     M  +   +   S++  C  H
Sbjct: 367 H-KLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVS-WNSIIVGCAQH 419



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 13/190 (6%)

Query: 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259
           LL  + + GRI EAR +F  +    V   T +I GYA  G  E+A++LF ++ V+ +IS 
Sbjct: 56  LLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLIS- 114

Query: 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319
              + S+L        L     +   +    + S+  + N L++     G +  +  +F 
Sbjct: 115 ---WNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEF----GRVEVAECLFR 167

Query: 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379
            M  + V +WN+M+ G+  +G   + +ELF  M   N      +++ +V+ G  H G   
Sbjct: 168 VMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRN-----VISWTSVIGGLDHNGRSF 222

Query: 380 RGLAVFHEIV 389
             L VFH+++
Sbjct: 223 EALVVFHKML 232


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 323/543 (59%), Gaps = 6/543 (1%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
           V++ + L+  Y K     +A+ + D + E++VV  TA+I  YSQK    EA+  F  ML 
Sbjct: 201 VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLV 260

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
              +PNE+T+A+VL SC        GK IH L++KS FES +   +SLL MY +   + +
Sbjct: 261 EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 320

Query: 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           +  VF+C+   + VS T++ISG  Q G +E A+  FRK+  + +  N  T +S L   S 
Sbjct: 321 SLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSN 380

Query: 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           LA    G+Q+H  V ++         + LID+Y KCG    +R VFD +SE  VIS N M
Sbjct: 381 LAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTM 440

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           +  Y+++G GRE ++LF  M     ++P+ VT L+VL  C++  + + G  +F      K
Sbjct: 441 IYSYAQNGFGREALDLFERMINLG-LQPNDVTVLSVLLACNNSRLVEEGCELFDSFR--K 497

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452
           D      +HY C+VD+LGRAGR+ EA E +      P   +  +LL AC+VH  V++ E 
Sbjct: 498 DKIMLTNDHYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAER 556

Query: 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILH 512
           + ++++EIEP + G  +++SNLYAS G+W  V  ++  MK+  + K+P  SW+E+++  H
Sbjct: 557 ITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETH 616

Query: 513 TFHASDR-SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLA 571
           TF A D  SHP  E++   +++L  K K+ GYV D SCV  D++E  KE+ L  HSEKLA
Sbjct: 617 TFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLA 676

Query: 572 LTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCG 631
           + F  +    G  IR++KNLR+CVDCH++ K VS+V  R++  RD  RFHH  +G+CSCG
Sbjct: 677 IAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCG 735

Query: 632 DYW 634
           DYW
Sbjct: 736 DYW 738



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 206/357 (57%), Gaps = 11/357 (3%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LL  C+++R++ G + + AHM+K+ + P     ++L+    KC  +  AR++FD M 
Sbjct: 68  FSQLLRQCIDERSISGIKTIQAHMLKSGF-PAEISGSKLVDASLKCGDIDYARQVFDGMS 126

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
           ER++V+W ++I+   +   S EA+ ++  M+ ++  P+E+T ++V  + +     +  ++
Sbjct: 127 ERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQR 186

Query: 181 IHSLIIKSNFE-SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
            H L +    E S+++VGS+L+DMY K G+  EA+ V + + E+DVV  TA+I GY+Q G
Sbjct: 187 SHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKG 246

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299
            D EA++ F+ + VE +  N  TYASVL +   L  +G+GK +H  +++    S +  Q 
Sbjct: 247 EDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQT 306

Query: 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE---VVELFNLMREEN 356
           SL+ MY +C  +  S RVF  +     +SW +++ G  ++  GRE   ++E   +MR+  
Sbjct: 307 SLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQN--GREEMALIEFRKMMRD-- 362

Query: 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413
            +KP+S T  + L GCS+  M + G  + H IV  K GF+ +      ++D+ G+ G
Sbjct: 363 SIKPNSFTLSSALRGCSNLAMFEEGRQI-HGIV-TKYGFDRDKYAGSGLIDLYGKCG 417



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 154/310 (49%), Gaps = 3/310 (0%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y ++L +C N + +  G+ +H  M+K+ +   +  +T L+  Y +C  + D+ ++F  + 
Sbjct: 270 YASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIE 329

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
             N VSWT++IS   Q      AL  F +M+R   +PN FT ++ L  C+    FE G+Q
Sbjct: 330 YPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQ 389

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH ++ K  F+   Y GS L+D+Y K G    AR VF+ L E DV+S   +I  YAQ G 
Sbjct: 390 IHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGF 449

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
             EA++LF ++   G+  N VT  SVL A +    +  G ++     + +I         
Sbjct: 450 GREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYAC 509

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
           ++D+  + G L  +  +   +    ++ W  +L     H   R+V     + R+  +++P
Sbjct: 510 MVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLLSACKVH---RKVEMAERITRKILEIEP 566

Query: 361 DSVTYLAVLS 370
                L ++S
Sbjct: 567 GDEGTLILMS 576


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/655 (34%), Positives = 348/655 (53%), Gaps = 63/655 (9%)

Query: 21  LTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRV 80
           ++  +  P+P + +     G LT               +    LL  C +         +
Sbjct: 1   MSTAAVLPSPASTRHPAGGGALTA--------------DRAAALLAGCASASR---AAEI 43

Query: 81  HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140
           HA  ++        +  RL   Y     L  A  +     +   V +T+ I A+S +   
Sbjct: 44  HAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLH 103

Query: 141 FEALNLFIRML--RSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS 198
             AL L   ML  R    P   T +  L +C       +G+ +H   +K       YV +
Sbjct: 104 RAALALLSEMLLSRHGLLPTAHTLSASLPACGC---LAVGRALHGYAVKLALSGEPYVAT 160

Query: 199 SLLDMY--------------------------------AKAGRIHEARGVFECLPERDVV 226
           +LL MY                                AK G++ +ARG+F+ LP +D+V
Sbjct: 161 ALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLV 220

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
              A++ GY Q G   EA+ LFR++   G+  + V+    L+A++ L     G+ +HS V
Sbjct: 221 CWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFV 280

Query: 287 L----RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKH 339
                R  +     +  +L+DMY KCGSL  +  VF ++    +R V++WNAM+ GY+ H
Sbjct: 281 ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMH 340

Query: 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399
           G  RE +E F  +R +  + P  +T++ VL+ CSH G+ D G A+F  + + + G  P++
Sbjct: 341 GRSREALEAFGQLRAQG-LWPTDITFIGVLNACSHSGLVDEGRALFAAMEE-EYGIVPKV 398

Query: 400 EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
           EHYGC+VD+LGRAGRV EA + +++M  +P AA+  SLLGACR+H N+ +G+ V   L+ 
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG 458

Query: 460 IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDR 519
               N+G YV+LSN+YA+AG+W +V RVR +M+   V K+PG S +E+ + +  F A DR
Sbjct: 459 NGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDR 518

Query: 520 SHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGT 579
           SHP   E+ AK+++++   +  G+VP    VL+D+D+  KE+ L  HSEKLAL FGLI T
Sbjct: 519 SHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLIST 578

Query: 580 PEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           P    I+++KNLR C DCH   K VS+  GRK+  RD+NRFHH V+G+CSCGDYW
Sbjct: 579 PPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 336/561 (59%), Gaps = 6/561 (1%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L++C + +  + GQ++H   +K      V +   L+  Y +   L++ RK+F  M E + 
Sbjct: 142 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 201

Query: 125 VSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW ++I A +    S  EA+  F+  LR+  + N  TF++VL++ +     ELGKQIH 
Sbjct: 202 VSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 261

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISGYAQLGLDE 242
           L +K N        ++L+  Y K G +     +F  + ER D V+  ++ISGY    L  
Sbjct: 262 LALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLA 321

Query: 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302
           +A++L   +   G   +   YA+VL+A + +A L  G +VH+  +R  + S VV+ ++L+
Sbjct: 322 KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALV 381

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362
           DMYSKCG L Y+ R F+ M  R   SWN+M+ GY++HG G E ++LF  M+ + +  PD 
Sbjct: 382 DMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDH 441

Query: 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422
           VT++ VLS CSH G+ + G   F  + D   G  P IEH+ C+ D+LGRAG + +  +FI
Sbjct: 442 VTFVGVLSACSHAGLLEEGFKHFESMSDSY-GLAPRIEHFSCMADLLGRAGELDKLEDFI 500

Query: 423 KNMPFEPTAAILGSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480
             MP +P   I  ++LGAC R +    ++G+   + L ++EPENA NYV+L N+YA+ GR
Sbjct: 501 DKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGR 560

Query: 481 WEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE 540
           WED+ + R+ MK+  V K+ G SW+ +   +H F A D+SHP  + +  K+K+L+ K ++
Sbjct: 561 WEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRD 620

Query: 541 AGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA-PIRVIKNLRICVDCHN 599
           AGYVP     LYD+++E KE++L  HSEKLA+ F L        PIR++KNLR+C DCH+
Sbjct: 621 AGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHS 680

Query: 600 FAKFVSKVYGRKVSLRDKNRF 620
             K++SK+ GR++ LRD NR+
Sbjct: 681 AFKYISKIEGRQIILRDSNRY 701



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 202/394 (51%), Gaps = 12/394 (3%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNA-----CVNQRTLRGGQRVHAHMIKTCYRP-PVY 94
           + TK  ++M ++ +++  E Y  LL++        Q  L+ G+ VH H+I T      V 
Sbjct: 12  EATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITTGLVDFMVG 70

Query: 95  LRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           +   L+  Y KC  ++DAR++F  M E++ VSW +MI+   Q     EA+  +  M R +
Sbjct: 71  IGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHE 130

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
             P  FT  + L+SCA     +LG+QIH   +K   + ++ V ++L+ +YA+ G ++E R
Sbjct: 131 ILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECR 190

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLD-EEAIELFRKLQVEGMISNYVTYASVLTALSGL 273
            +F  +PE D VS  +II   A       EA+  F      G   N +T++SVL+A+S L
Sbjct: 191 KIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSL 250

Query: 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAM 332
           +    GKQ+H   L++ I      +N+LI  Y KCG +    ++F  MSE R  ++WN+M
Sbjct: 251 SFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSM 310

Query: 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           + GY  + +  + ++L   M +  + + DS  Y  VLS  +     +RG+ V       +
Sbjct: 311 ISGYIHNELLAKALDLVWFMLQTGQ-RLDSFMYATVLSAFASVATLERGMEV--HACSVR 367

Query: 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              E ++     +VDM  + GR+  AL F   MP
Sbjct: 368 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 401



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           Y T+L+A  +  TL  G  VHA  ++ C    V + + L+  Y+KC  L  A + F+ M 
Sbjct: 342 YATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 401

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELG- 178
            RN  SW +MIS Y++     EAL LF  M L   T P+  TF  VL++C+ A   E G 
Sbjct: 402 VRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGF 461

Query: 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV--------SCTA 230
           K   S+         I   S + D+  +AG + +     + +P +  V        +C  
Sbjct: 462 KHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCR 521

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                A+LG  ++A E+  +L+ E  + NYV   ++  A
Sbjct: 522 ANGRKAELG--KKAAEMLFQLEPENAV-NYVLLGNMYAA 557


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 341/589 (57%), Gaps = 5/589 (0%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103
           K    M  L ++       ++++AC      R G+ +HA++I T +   + +   L   Y
Sbjct: 283 KLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342

Query: 104 NKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163
                  +A K+F  M  +++VSWT MIS Y       +A++ +  M +   +P+E T A
Sbjct: 343 LYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVA 402

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
            VL++CA     + G ++H L IK+   S++ V ++L++MY+K   I +A  +F  +P +
Sbjct: 403 AVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283
           +V+S T+II+G        EA+  FR++++  +  N +T  + L A + + AL  GK++H
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIH 521

Query: 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGR 343
           +HVLR  +     L N+L+DMY +CG +  +   F N  ++ V SWN +L GYS+ G G 
Sbjct: 522 AHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQF-NSQKKDVSSWNILLTGYSERGQGS 580

Query: 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403
            VVELF+ M +  +V+PD +T++++L GC    M  +GL  F ++ +   G  P ++HY 
Sbjct: 581 VVVELFDRMVKA-RVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEY--GVTPNLKHYA 637

Query: 404 CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463
           CVVD+LGRAG + EA +FI+ MP  P  A+ G+LL ACR+H+N+D+GE   QR+ E++  
Sbjct: 638 CVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKG 697

Query: 464 NAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPM 523
           + G Y++L NLYA  G+W +V +VR +MKE  +T D G SW+E+   +H F + D+ HP 
Sbjct: 698 SVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQ 757

Query: 524 REELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGA 583
            +E++  +     K  E G          D  E  ++++  GHSE+ A+ FGLI +  G 
Sbjct: 758 TKEINTVLDGFYEKMSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGM 817

Query: 584 PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632
           PI V KNL +C  CH+  KF+SK   R++S+RD   FHH  +G CSCGD
Sbjct: 818 PIWVTKNLNMCESCHDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 209/398 (52%), Gaps = 7/398 (1%)

Query: 33  LKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY 89
           L  LC+NG+L +A   L  M  L + +  + +  L+  C  +R    G +V++  + +  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 90  RPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIR 149
              V L    +  + +   L DA  +F +M ERN+ SW  ++  Y+++ +  EA+ L+ R
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 150 MLR-SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208
           ML     +P+ +TF  VL +C G      G+++H  +++  +E  I V ++L+ MY K G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268
            +  AR +F+ +P RD++S  A+ISGY + G+  E ++LF  ++   +  + +T  SV++
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           A   L     G+ +H++V+       + + NSL  MY   GS   + ++F  M  + ++S
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W  M+ GY  + +  + ++ + +M +++ VKPD +T  AVLS C+  G  D G+ + H++
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMM-DQDSVKPDEITVAAVLSACATLGDLDTGVEL-HKL 423

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426
              K      +     +++M  +   + +AL+   N+P
Sbjct: 424 A-IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 156/293 (53%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  +L  C     L  G+ VH H+++  Y   + +   LI  Y KC  +  AR +FD M 
Sbjct: 199 FPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
            R+++SW AMIS Y +     E L LF  M     +P+  T  +V+++C       LG+ 
Sbjct: 259 RRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ +I + F   I V +SL  MY  AG   EA  +F  +  +D+VS T +ISGY    L
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFL 378

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
            E+AI+ +R +  + +  + +T A+VL+A + L  L  G ++H   ++  + SYV++ N+
Sbjct: 379 PEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN 438

Query: 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353
           LI+MYSKC  +  +  +F N+  + VISW +++ G   +    E +  F  M+
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMK 491


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 348/625 (55%), Gaps = 73/625 (11%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKC----ECLSDARKMFDEMRERNVVSWT------ 128
           + HA  +K+       +   L+  Y++C      L  ARK+FD++ E++  SWT      
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGY 229

Query: 129 --------------------------AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
                                     AMIS Y       EAL +  RM+ S  E +EFT+
Sbjct: 230 VKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +V+ +CA A   +LGKQ+H+ +++  +F  H    +SL+ +Y K G+ +EAR +FE +P
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRREDFSFHF--DNSLVTLYYKCGKFNEARAIFEKMP 347

Query: 222 ERDVVSCTAIISGY-------------------------------AQLGLDEEAIELFRK 250
            +D+VS  A++SGY                               A+ G  EE ++LF  
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           ++ EG       ++  + + + L A  +G+Q H+ +++    S +   N+LI MY+KCG 
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGV 467

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +++VF  M     +SWNA++    +HG G E V+++  M ++  ++PD +T+L VL+
Sbjct: 468 VEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKG-IRPDRITFLTVLT 526

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+ D+G   F+ + +      P  +HY  ++D+L R+G+  EA   I+++PF+PT
Sbjct: 527 ACSHAGLVDQGRKYFNSM-ETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPT 585

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A I  +LL  CRVH N+++G     +L  + PE+ G Y++LSN+YA+ G+WE+V RVR+L
Sbjct: 586 AEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKL 645

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           M+++ V K+   SWIE++  +HTF   D SHP  E +   ++ L  + +  GYVPD S V
Sbjct: 646 MRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFV 705

Query: 551 LYDVDEE-QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           L+DV+ +  KE +L  HSEK+A+ FGL+  P G  IR+ KNLR C DCHNF +F+SKV  
Sbjct: 706 LHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQ 765

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + LRD+ RFHH   G CSCG++W
Sbjct: 766 RDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 193/409 (47%), Gaps = 80/409 (19%)

Query: 61  YDTLLNACVNQR--TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           Y   L  C+  R  +L+  + VH ++I   ++P  ++  RLI  Y K   L  AR++FDE
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDE 74

Query: 119 MRE---------------------------------RNVVSWTAMISAYSQKAHSFEALN 145
           + E                                 R+ V + AMI+ +S     + A+N
Sbjct: 75  ISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMY 204
           LF +M     +P++FT+A+VL   A     E    Q H+  +KS       V ++L+ +Y
Sbjct: 135 LFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVY 194

Query: 205 AKAGR----IHEARGVFECLPERD--------------------------------VVSC 228
           ++       +H AR VF+ +PE+D                                +V+ 
Sbjct: 195 SRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAY 254

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+ISGY   GL +EA+E+ R++   G+  +  TY SV+ A +    L  GKQVH++VLR
Sbjct: 255 NAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR 314

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E  S+    NSL+ +Y KCG    +R +F+ M  + ++SWNA+L GY   G   E   +
Sbjct: 315 REDFSF-HFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           F  M+E+N      ++++ ++SG +  G  + GL +F  +   ++GFEP
Sbjct: 374 FKEMKEKN-----ILSWMIMISGLAENGFGEEGLKLFSCMK--REGFEP 415



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 58  FEEYDTLLNACVNQRTLRG----GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           FE  D   +  +    + G    GQ+ HA ++K  +   +     LI  Y KC  + +A+
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQ 472

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F  M   + VSW A+I+A  Q  H  EA++++  ML+    P+  TF TVLT+C+ A 
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAG 532

Query: 174 GFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC-TAI 231
             + G++  +S+             + L+D+  ++G+  EA  + E LP +       A+
Sbjct: 533 LVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEAL 592

Query: 232 ISG 234
           +SG
Sbjct: 593 LSG 595


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/576 (37%), Positives = 342/576 (59%), Gaps = 9/576 (1%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +L+ +C ++  L    ++HAH+I T     P V LR            L  +R++FD + 
Sbjct: 32  SLIKSCTHKSQL---LQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLT 88

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180
              V  + AM+ AYS      E L ++  M R     +  + +  + SC        G Q
Sbjct: 89  NPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQ 148

Query: 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 240
           IH+ I  +  ++   + +S++D+Y+  G+  EA  +F+ +P++DVV+   +IS   +   
Sbjct: 149 IHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKR 208

Query: 241 DEEAIELFRKLQVEGMI--SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298
             +A+ LF  +Q    +   + VT   +L A + L AL  G+++H ++ +    +   L 
Sbjct: 209 TRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLC 268

Query: 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358
           NSLI MYS+CG +  +  VFD M+E+ V+SW+AM+ G S +G GRE +E F  M ++N V
Sbjct: 269 NSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEM-QKNGV 327

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418
           +P   T+ AVLS CSH G+ D G+A F  +   +    P + HYGC+VD+LGRAG + +A
Sbjct: 328 EPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQ-EFMIAPNVHHYGCIVDLLGRAGMLDQA 386

Query: 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478
            E I +M   P A +  +LLGACR+H + ++GE + + L+E++ + AG+YV+L N+Y+SA
Sbjct: 387 YELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSA 446

Query: 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKF 538
           G W+ VT +R+LMKEK +   P  + IEL+ ++H F   D SHPM++++  ++ +++ + 
Sbjct: 447 GNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQL 506

Query: 539 KEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCH 598
           K AGY  +MS  L+ ++ + K   L  HSEKLA+ FG++ TP G  IR+  N+R C+DCH
Sbjct: 507 KIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCH 566

Query: 599 NFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           NFAK++S VY RKV +RD++RFHH  EG CSC D+W
Sbjct: 567 NFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 335/592 (56%), Gaps = 36/592 (6%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
            +++HA +IK        +   L+  Y KC  + DA ++FD +  R+ V+W ++++A + 
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKSNFESHI 194
                 AL++   +L +   P+ F FA+++ +CA  G    + GKQ+H+    S F    
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRK---- 250
            V SSL+DMYAK G     R VF+ +   + +S T +ISGYA+ G   EA  LFR+    
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 251 ---------------------------LQVEGM-ISNYVTYASVLTALSGLAALGHGKQV 282
                                      ++ EG+ +++ +  +SV+ A + LA    GKQ+
Sbjct: 202 NLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQM 261

Query: 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMG 342
           H  V+     S + + N+LIDMY+KC  L  ++ +F  M  + V+SW +++VG ++HG  
Sbjct: 262 HGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQA 321

Query: 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402
            E + L++ M     VKP+ VT++ ++  CSH G+  +G  +F  +V+   G  P ++HY
Sbjct: 322 EEALALYDEMVLAG-VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVE-DHGISPSLQHY 379

Query: 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462
            C++D+  R+G + EA   I+ MP  P      +LL +C+ H N  +   +   L+ ++P
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKP 439

Query: 463 ENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHP 522
           E+  +Y++LSN+YA AG WEDV++VR+LM      K PG S I+L +  H F+A + SHP
Sbjct: 440 EDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHP 499

Query: 523 MREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
           MR+E+   +++L  + ++ GY PD S VL+D+D+++KE+ L  HSE+LA+ +GL+    G
Sbjct: 500 MRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPG 559

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
             IR++KNLR+C DCH   K +S +  R++ +RD  R+HH  +G CSC D+W
Sbjct: 560 TVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 160/347 (46%), Gaps = 44/347 (12%)

Query: 61  YDTLLNACVNQRTL--RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           + +L+ AC N   L  + G++VHA    + +     +++ LI  Y K       R +FD 
Sbjct: 107 FASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDS 166

Query: 119 MRERNVVSWTAMISAYSQKAHSFEALNLFIR---------------MLRSDTEPNEF--- 160
           +   N +SWT MIS Y++    FEA  LF +               +++S    + F   
Sbjct: 167 ISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLF 226

Query: 161 --------------TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK 206
                           ++V+ +CA    +ELGKQ+H ++I   +ES +++ ++L+DMYAK
Sbjct: 227 VEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAK 286

Query: 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266
              +  A+ +F  +  +DVVS T+II G AQ G  EEA+ L+ ++ + G+  N VT+  +
Sbjct: 287 CSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGL 346

Query: 267 LTALSGLAALGHGK-----QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           + A S    +  G+      V  H +   +  Y      L+D++S+ G L  +  +   M
Sbjct: 347 IHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTC----LLDLFSRSGHLDEAENLIRTM 402

Query: 322 S-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
                  +W A+L    +HG  +  V + + +       P S   L+
Sbjct: 403 PVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLS 449



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 10/218 (4%)

Query: 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 236
           L K++H+ IIK+    H  + ++LL+ Y K G I +A  +F+ LP RD V+  ++++   
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL--GHGKQVHSHVLRFEIPSY 294
                  A+ + R L   G   ++  +AS++ A + L  L    GKQVH+          
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
            V+++SLIDMY+K G   Y R VFD++S    ISW  M+ GY++ G   E   LF     
Sbjct: 141 DVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPY 200

Query: 355 ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
            N        + A++SG    G    G+  FH  V+ +
Sbjct: 201 RNL-----FAWTALISGLVQSG---NGVDAFHLFVEMR 230


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 345/610 (56%), Gaps = 78/610 (12%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136
           G++VH   +++     V++   L+  Y KC  + DA K+F+ MR ++VV+W AM++ YSQ
Sbjct: 250 GRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQ 309

Query: 137 KAHSFEALNLFIRM----LRSDT-------------------------------EPNEFT 161
                +AL+LF +M    + SD                                 PN  T
Sbjct: 310 NGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVT 369

Query: 162 FATVLTSCAGAFGFELGKQIHSLIIK-------SNFESHIYVGSSLLDMYAKAGRIHEAR 214
             ++L++CA       GK+ H   +K       ++    + V ++L+DMYAK   +  AR
Sbjct: 370 LMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVAR 429

Query: 215 GVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEG-MISNYVTYASVLTAL 270
            +F+  C  +RDVV+ T +I GYAQ G    A++LF ++ +++  ++ N  T + VL A 
Sbjct: 430 AMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMAC 489

Query: 271 SGLAALGHGKQVHSHVLR-FEIPSYVV-LQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
           + LAAL  GKQ+H++VLR   I S V+ + N LIDMYSK G +  ++ VFD+MS+R  +S
Sbjct: 490 ARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVS 549

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
           W ++L GY  HG   +   +F+ MR+E  V  D +T+L VL  CSH GM+          
Sbjct: 550 WTSLLTGYGMHGRSEDAFRVFDEMRKEALVL-DGITFLVVLYACSHSGMDF--------- 599

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                G +P +EHY C+VD+LGRAGR+GEA+  I +MP EPT  +  +LL ACR+H N +
Sbjct: 600 -----GVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEE 654

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
           + EF  ++L+E++ +N G Y +LSN+YA+A RW+DV R+  LMK   + K PG SW++  
Sbjct: 655 LAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGR 714

Query: 509 QILHTFHASDRSH----PMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLL 564
           + + TF+  DR+H     + E L+  +K++   F            L+DVD+E+K   L 
Sbjct: 715 KGMETFYVGDRTHLQSQKIYETLADLIKRIKANFS-----------LHDVDDEEKGDQLS 763

Query: 565 GHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
            HSEKLAL + ++  P GAPIR+ KNLRIC D H+   ++S +   ++ LRD +RFH   
Sbjct: 764 EHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFK 823

Query: 625 EGTCSCGDYW 634
            G+CSC  YW
Sbjct: 824 NGSCSCKGYW 833



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 229/502 (45%), Gaps = 88/502 (17%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M TL        +  +  AC        G  +H  +I+  +   V++   +I  Y KC+ 
Sbjct: 117 MKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKA 176

Query: 109 LSDARKMFDEMRERNV---VSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFAT 164
           +  ARK+FDE+  R +   V+W +++S YS       A++LF  M +     P+      
Sbjct: 177 VVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVN 236

Query: 165 VLTSCAGAFGFEL-GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER 223
           +L  C G  G  L G+Q+H   ++S     ++VG++L+DMYAK G++ +A  VFE +  +
Sbjct: 237 ILPVC-GYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK 295

Query: 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV----------------- 266
           DVV+  A+++GY+Q G  E+A+ LF K++ E + S+ VT++SV                 
Sbjct: 296 DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVF 355

Query: 267 ------------------LTALSGLAALGHGKQVHSHVLRFEIPSY-------VVLQNSL 301
                             L+A + + AL HGK+ H + ++F +          + + N+L
Sbjct: 356 RQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINAL 415

Query: 302 IDMYSKCGSLTYSRRVFDNM--SERTVISWNAMLVGYSKHGMGREVVELFNLM-REENKV 358
           IDMY+KC SL  +R +FD +   +R V++W  M+ GY++HG     ++LF+ M + +N +
Sbjct: 416 IDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCI 475

Query: 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGE 417
            P+  T   VL  C+       G  + H  V  +   + ++     C++DM  ++G V  
Sbjct: 476 VPNDFTISCVLMACARLAALKFGKQI-HAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDT 534

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A     +M                                      NA ++  L   Y  
Sbjct: 535 AQVVFDSM-----------------------------------SKRNAVSWTSLLTGYGM 559

Query: 478 AGRWEDVTRVRELMKEKAVTKD 499
            GR ED  RV + M+++A+  D
Sbjct: 560 HGRSEDAFRVFDEMRKEALVLD 581



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 169/329 (51%), Gaps = 9/329 (2%)

Query: 72  RTLRGGQRVHAHMIKTCYRPPVYLR-TRLIVFYNKCECLSDARKMFDEM---RERNVVSW 127
           +TL   + +H   I   +    Y   T LI  Y     +++A  + ++       +V  W
Sbjct: 35  KTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWW 94

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
             +I           AL LF RM      P+ +TF  V  +C     FELG  IH  +I+
Sbjct: 95  NQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIR 154

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEA 244
             FES+++V ++++ MY K   +  AR VF+ L  R   D V+  +I+S Y+   +   A
Sbjct: 155 LGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVA 214

Query: 245 IELFRKLQV-EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303
           + LFR++ V  G++ + V   ++L     L     G+QVH   +R  +   V + N+L+D
Sbjct: 215 VSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVD 274

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+KCG +  + +VF+ M  + V++WNAM+ GYS++G   + + LF  MREE K++ D V
Sbjct: 275 MYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREE-KIESDVV 333

Query: 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392
           T+ +V+SG +  G     + VF ++  C+
Sbjct: 334 TWSSVISGYAQRGFGCEAMDVFRQMCGCR 362



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 20/215 (9%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +L AC     L+ G+++HA++++        +++   LI  Y+K   +  A+ +FD M +
Sbjct: 485 VLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSK 544

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RN VSWT++++ Y     S +A  +F  M +     +  TF  VL +C+ + G + G   
Sbjct: 545 RNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHS-GMDFG--- 600

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGL 240
               +    E +    + ++D+  +AGR+ EA  +   +P E   V   A++S   ++  
Sbjct: 601 ----VDPGVEHY----ACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSA-CRIHS 651

Query: 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275
           +EE  E   K  +E    N  TY    T LS + A
Sbjct: 652 NEELAEFAAKKLLELKADNDGTY----TLLSNIYA 682


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/611 (34%), Positives = 357/611 (58%), Gaps = 44/611 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF------YNK-CECLSDARKM 115
            LL +C +   L+    +H  +++T     V++ +RL+        +NK    L  A  +
Sbjct: 17  ALLQSCSSFSDLK---IIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGI 73

Query: 116 FDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175
           F +++  N+  +  +I  +S  A   +A   + +ML+S   P+  TF  ++ + +     
Sbjct: 74  FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYA------------------------------ 205
            +G+Q HS I++  F++ +YV +SL+ MYA                              
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193

Query: 206 -KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264
            K G +  AR +F+ +P R++ + + +I+GYA+    E+AI+LF  ++ EG+++N     
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253

Query: 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER 324
           SV+++ + L AL  G++ + +V++  +   ++L  +L+DM+ +CG +  +  VF+ + E 
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET 313

Query: 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384
             +SW++++ G + HG   + +  F+ M     + P  VT+ AVLS CSHGG+ ++GL +
Sbjct: 314 DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI-PRDVTFTAVLSACSHGGLVEKGLEI 372

Query: 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVH 444
           + E +    G EP +EHYGC+VDMLGRAG++ EA  FI  M  +P A ILG+LLGAC+++
Sbjct: 373 Y-ENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431

Query: 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504
            N ++ E VG  L++++PE++G YV+LSN+YA AG+W+ +  +R++MKEK V K PG S 
Sbjct: 432 KNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSL 491

Query: 505 IELDQILHTF-HASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVL 563
           IE+D  ++ F    D+ HP   ++  K +++  K +  GY  +     +DVDEE+KE  +
Sbjct: 492 IEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSI 551

Query: 564 LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHI 623
             HSEKLA+ +G++ T  G  IR++KNLR+C DCH   K +S+VYGR++ +RD+NRFHH 
Sbjct: 552 HMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHF 611

Query: 624 VEGTCSCGDYW 634
             G CSC DYW
Sbjct: 612 RNGVCSCRDYW 622


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 321/523 (61%), Gaps = 42/523 (8%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC   + L+ G ++H  + K+ Y   V++ + LI FY+KC  +  AR++FD M E+NV
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNV 222

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184
           VSW  +I+ Y Q   + EAL  F RM     +P+E T A+V+++CA    F+ G QIH+ 
Sbjct: 223 VSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHAR 282

Query: 185 IIKSN-FESHIYVGSSLLDMYAKAGRIHEARGVFECLP---------------------- 221
           ++KS+ F + + +G++L+DMYAK GR++EAR VF+ +P                      
Sbjct: 283 VVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKA 342

Query: 222 ---------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
                    ++D+VS  A+I+GY Q G +EEA+ LFR L+ E +   + T+ ++L A + 
Sbjct: 343 ARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASAN 402

Query: 273 LAALGHGKQVHSHVL----RF---EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
           LA L  G+Q HSHV+    RF   E P  + + NSLIDMY KCGS+    RVF+NM E+ 
Sbjct: 403 LADLELGRQAHSHVVKHGFRFQSGEEPD-IFVGNSLIDMYMKCGSVEEGLRVFENMVEKD 461

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
            +SWN M++GY+++G G E +ELF  M E  + KPD VT +  L  CSH G+ + G   F
Sbjct: 462 HVSWNTMIIGYAQNGYGMEALELFQKMLESGE-KPDHVTMIGTLCACSHAGLVEEGRRYF 520

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
             +   + G  P  +HY C+VD+LGRAG + EA + I++MP +P A +  SLL AC+VH 
Sbjct: 521 FSMTK-EHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHR 579

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           N+ +G++V +++ EI+P ++G YV+L+N+Y+  GRW D   VR+LM+ + V K PG SWI
Sbjct: 580 NITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWI 639

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMS 548
           ++   +H F   D+ HP ++E+ + +K L+   ++AGYVPD S
Sbjct: 640 DIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDAS 682



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 235/468 (50%), Gaps = 73/468 (15%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LL+ CV  R+ R  + VH  +I+T +   V+++ RLI  Y KC  L  ARK+FD M 
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 121 ERNVVS-------------------------------WTAMISAYSQKAHSFEALNLFIR 149
           ERNV S                               W +MI+ ++Q     EAL+ F+R
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 150 MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
           M R D   N+++F + L++C+     +LG QIH LI KS +   +++GS L+D Y+K G 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  AR VF+ + E++VVS   +I+ Y Q G   EA+E F ++   G   + VT ASV++A
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266

Query: 270 LSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM------- 321
            + LAA   G Q+H+ V++ +   + ++L N+L+DMY+KCG +  +R VFD M       
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326

Query: 322 ------------------------SERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
                                    ++ ++SWNA++ GY+++G   E + LF +++ E+ 
Sbjct: 327 ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRES- 385

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF------EPEIEHYGCVVDMLGR 411
           V P   T+  +L+  ++    + G      +V  K GF      EP+I     ++DM  +
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVV--KHGFRFQSGEEPDIFVGNSLIDMYMK 443

Query: 412 AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459
            G V E L   +NM  +   +    ++G  +  Y ++  E   Q+++E
Sbjct: 444 CGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELF-QKMLE 490



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 51/351 (14%)

Query: 44  KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVF 102
           +A   M  LG +       ++++AC      + G ++HA ++K+  +R  + L   L+  
Sbjct: 243 EAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDM 302

Query: 103 YNKC------ECLSD-------------------------ARKMFDEMRERNVVSWTAMI 131
           Y KC       C+ D                         AR MF  ++++++VSW A+I
Sbjct: 303 YAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALI 362

Query: 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF- 190
           + Y+Q   + EAL LF  + R    P  +TF  +L + A     ELG+Q HS ++K  F 
Sbjct: 363 AGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFR 422

Query: 191 -----ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAI 245
                E  I+VG+SL+DMY K G + E   VFE + E+D VS   +I GYAQ G   EA+
Sbjct: 423 FQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEAL 482

Query: 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ-----VHSHVLRFEIPSYVVLQNS 300
           ELF+K+   G   ++VT    L A S    +  G++        H L      Y      
Sbjct: 483 ELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTC---- 538

Query: 301 LIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH---GMGREVVE 347
           ++D+  + G L  ++ + ++M ++   + W+++L     H    +G+ V E
Sbjct: 539 MVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAE 589


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 338/584 (57%), Gaps = 10/584 (1%)

Query: 54  LEMRFEEYDTLLNAC--VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111
           L+     Y T+L +C  + +  L  G+ +H H I   +   + ++  LI  Y KC     
Sbjct: 79  LQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKF 138

Query: 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171
           A  +F++M  +N++S+T+MI AY+  A   EA  L+ +ML     P+ + +A  L  C  
Sbjct: 139 AAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPT 198

Query: 172 AFGFELGKQIHSLIIKSNFESHIYVGS-SLLDMYAKAGRIHEARGVFECLPERDVVSCTA 230
                 G+ IH  +   N E    V S +L+ MY + GRI  A+ VF+ +  +D+ S   
Sbjct: 199 ---IREGEAIHVKL--GNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNN 253

Query: 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290
           +I+ +A+     +AI L+ +++   +  N  T+ SVL A S L AL  GK++H  V   +
Sbjct: 254 MIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGD 313

Query: 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFN 350
            P+ V    +L++MY+KCGS   +R VF++   + V +W +++  YS+ G  +  +E + 
Sbjct: 314 QPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQ 373

Query: 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410
            M  E  V PD VT+ A+ + CSH G+ D GL  F  + +      P   HY C++D+LG
Sbjct: 374 RMNCEG-VIPDDVTFTAIFNACSHSGLPDEGLLYFRAMRE-DHWIVPLQPHYTCMIDLLG 431

Query: 411 RAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470
           R GR+ EA E ++ MP+ P       LL AC+V+ ++ IG    +R+ E+ P ++G Y++
Sbjct: 432 RVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLL 491

Query: 471 LSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAK 530
           + N+YA AG+W DV  V++++K++ + K PG+S IE  + +H F   D +HP+ +E+ A+
Sbjct: 492 MGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRAR 551

Query: 531 VKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKN 590
           ++++  +   AGY PD   VL DV+EE K ++LL HSE++AL  GL+ +  GA + ++KN
Sbjct: 552 LQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKN 611

Query: 591 LRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           LRIC DCH+F K VSK+  RKV +RD +RFH    G+CSCGDYW
Sbjct: 612 LRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 172/329 (52%), Gaps = 11/329 (3%)

Query: 93  VYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
            +L   L+  Y +C+ + DA   F E+ E+N  S+  M+ AY +     +AL LF + + 
Sbjct: 17  TFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSIN 76

Query: 153 SDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210
            + + N+ T+ TVL SCA  G    E GK+IH   I   F + + V +SL+ MYAK G  
Sbjct: 77  EELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSF 136

Query: 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
             A GVFE +  ++++S T++I  Y       EA EL++K+  EG++ +   YA+   AL
Sbjct: 137 KFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAA---AL 193

Query: 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWN 330
           +    +  G+ +H  +   E  +  V  N+L+ MY + G +  ++ VFD +  + + S+N
Sbjct: 194 AVCPTIREGEAIHVKLGNHERRT-PVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYN 252

Query: 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390
            M+  ++K+  G + + L+  M   N ++P+  T+ +VL  CS  G    G  +  ++  
Sbjct: 253 NMIAVFAKYDDGSKAISLYIEMEGRN-LEPNLWTFTSVLDACSKLGALTEGKEIHKKV-- 309

Query: 391 CKDGFEP-EIEHYGCVVDMLGRAGRVGEA 418
            K G +P ++ +   +V+M  + G   EA
Sbjct: 310 -KGGDQPTDVAYNTALVNMYAKCGSTHEA 337



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 5/195 (2%)

Query: 182 HSLIIKSNFESH--IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239
           H  II +N E     ++G+ L+  Y +   I +A   F  + E++  S   ++  Y +  
Sbjct: 3   HERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQEND 62

Query: 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA--LGHGKQVHSHVLRFEIPSYVVL 297
           L ++A++LF+K   E +  N  TY +VL + + L    L  GK++H H +     + +V+
Sbjct: 63  LHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVV 122

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
           QNSLI MY+KCGS  ++  VF+ M  + +IS+ +M+  Y+      E  EL+  M  E  
Sbjct: 123 QNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEG- 181

Query: 358 VKPDSVTYLAVLSGC 372
           + PD   Y A L+ C
Sbjct: 182 IMPDIYAYAAALAVC 196



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 14/196 (7%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           IEM    LE     + ++L+AC     L  G+ +H  +        V   T L+  Y KC
Sbjct: 272 IEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKC 331

Query: 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166
               +AR +F++   +NV +WT+++SAYSQ   S   L  + RM      P++ TF  + 
Sbjct: 332 GSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIF 391

Query: 167 TSCA-------GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFEC 219
            +C+       G   F   ++ H ++     + H    + ++D+  + GR+ EA  +   
Sbjct: 392 NACSHSGLPDEGLLYFRAMREDHWIV---PLQPHY---TCMIDLLGRVGRLREAEELVRT 445

Query: 220 LP-ERDVVSCTAIISG 234
           +P   DVV+ T ++S 
Sbjct: 446 MPYSPDVVTWTILLSA 461


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 334/559 (59%), Gaps = 9/559 (1%)

Query: 79  RVHAHMIKTCYRP-PVYLRTRLIVFYNKCEC-LSDARKMFDEMRERNVVSWTAMISAYSQ 136
           ++HA ++KT +   P+ LR  L+         LS AR +FD +   +  ++  +I A++ 
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            + SF       +M  +   P+ FTF  VL +CA     + G  +HSL+ K  F+S +YV
Sbjct: 66  SSPSFSLSLF-SKMAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYV 121

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            + L+  Y   G +  A  VFE +PERD+VS +++I+ +A+ G   EA+ LF+++Q+ G 
Sbjct: 122 QNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 257 IS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  + V   SV++A+S L  L  GK +   + R  +   V L  +L+DM+S+CG +  S 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           RVFD M ER V++W A++ G + HG   E + +F  MR     +PD VT+  VL  CSHG
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHG-FQPDHVTFTGVLVACSHG 300

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G  VF  I + + G EP  EHYGC+VD+LGRAG + EA +F+  MP  P + I  
Sbjct: 301 GLVSEGWHVFESIRN-EYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWR 359

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGAC  H  +++ E V +++ E++  + G+YV+LSN+Y   GRW +   VR  M+EK 
Sbjct: 360 TLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKR 419

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           ++K PG S I ++ ++H F A D +HP  E +   +  +    K  GY PD+S VL+D++
Sbjct: 420 ISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIE 479

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+KE  L  HSEKLA+ F L+   +   IRV+KNLRIC DCH F K+ S V+ R++ +R
Sbjct: 480 EEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D+NRFHH  +G+CSC DYW
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 157/299 (52%), Gaps = 14/299 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +MA  G+      +  +L AC   +T   G  +H+ + K  +   VY++  LI FY  C 
Sbjct: 77  KMAMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVL 166
            L  A K+F+EM ER++VSW++MI+ +++    +EAL LF RM L    +P+E    +V+
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++ +     ELGK I   I ++  E  + +G++L+DM+++ G I E+  VF+ + ER+V+
Sbjct: 194 SAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVL 253

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           + TA+I+G A  G   EA+ +F +++  G   ++VT+  VL A S    +  G  V   +
Sbjct: 254 TWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 287 LRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
            R E     +P +      ++D+  + G L  + +  D M  R   I W  +L     H
Sbjct: 314 -RNEYGMEPLPEH---YGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNH 368


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 356/610 (58%), Gaps = 39/610 (6%)

Query: 49  MATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC 108
           M   G+E     +   L  C +   L  G+ +H  ++ +       L+  L+  Y KC+ 
Sbjct: 102 MIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDE 161

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT-EPNEFTFATVLT 167
           + +ARK+F+ M+ RNV S+TAMISAY Q     EAL LF RM + +  EPN +TFAT+L 
Sbjct: 162 MVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILG 221

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +  G    E G+++H  +    F++++ V ++L+ MY K G   EAR VF+ +  R+V+S
Sbjct: 222 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 281

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I+ YAQ G  +EA+ LF+++ VE    + V+++S L A + L AL  G+++H  V+
Sbjct: 282 WTSMIAAYAQHGNPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVV 338

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
              + S   ++ SL+ MY++CGSL  +RRVF+ M  R   S NAM+  +++HG  ++ + 
Sbjct: 339 EAHLAS-PQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALR 397

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE---------PE 398
           ++  M +E  +  D +T+++VL  CSH  +          + DC+D F+         P 
Sbjct: 398 IYRRMEQEG-IPADGITFVSVLVACSHTSL----------VADCRDFFQSLVMDHGVVPL 446

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +EHY C+VD+LGR+GR+G+A E ++ MP++  A    +LL  C+ H +++ GE   +++ 
Sbjct: 447 VEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVF 506

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E+ P     YV LSN+YA+A R++D  RVR+ M+E+ VT     S+IE+D  LH F +  
Sbjct: 507 ELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGG 566

Query: 519 RS-----HPMR--EELSAKVKQLSVKFKEAGYVPDMSCVLYD----VDEEQKEKVLLGHS 567
           R      H  R  E + + + +L    K+AGYVPD   V  +      EE+K++ L  HS
Sbjct: 567 RDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHS 626

Query: 568 EKLALTFGLIGT--PEGA-PIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624
           E+LA+ +GLI    P+ + P+RV+ + R+C DCH+  K +S +  + + +RD NRFHH  
Sbjct: 627 ERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFE 686

Query: 625 EGTCSCGDYW 634
           +G CSCGD+W
Sbjct: 687 KGACSCGDHW 696



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 207/364 (56%), Gaps = 8/364 (2%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           +L+ AC   + L  G+R+H H+I T +R  + L T L+  Y KC  L DA+++F+ M  +
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 74

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
           ++ +W+++ISAY++      A+ L+ RM+    EPN  TFA  L  CA   G   G+ IH
Sbjct: 75  DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 134

Query: 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 242
             I+ S       +  SLL+MY K   + EAR VFE +  R+V S TA+IS Y Q G   
Sbjct: 135 QRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHA 194

Query: 243 EAIELFRKL-QVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL 301
           EA+ELF ++ +VE +  N  T+A++L A+ GL  L  G++VH H+      + VV+QN+L
Sbjct: 195 EALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNAL 254

Query: 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD 361
           + MY KCGS   +R+VFD+M+ R VISW +M+  Y++HG  +E + LF  M     V+P 
Sbjct: 255 VTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM----DVEPS 310

Query: 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421
            V++ + L+ C+  G  D G  + H +V+      P++E    ++ M  R G + +A   
Sbjct: 311 GVSFSSALNACALLGALDEGREIHHRVVEAHLA-SPQME--TSLLSMYARCGSLDDARRV 367

Query: 422 IKNM 425
              M
Sbjct: 368 FNRM 371



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 179/368 (48%), Gaps = 33/368 (8%)

Query: 158 NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
           ++F   +++ +C      E G+++H  +I + F + I + ++LL MYAK G + +A+ VF
Sbjct: 9   DKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVF 68

Query: 218 ECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277
           E +  +D+ + ++IIS YA+ G  E A+ L+R++  EG+  N VT+A  L   + +A L 
Sbjct: 69  EGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLA 128

Query: 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS 337
            G+ +H  +L  ++P   VLQ+SL++MY KC  +  +R+VF+ M  R V S+ AM+  Y 
Sbjct: 129 DGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYV 188

Query: 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           + G   E +ELF+ M +   ++P++ T+  +L      G  ++G  V   +     GF+ 
Sbjct: 189 QAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA--SRGFDT 246

Query: 398 EIEHYGCVVDMLGRA-------------------------------GRVGEALEFIKNMP 426
            +     +V M G+                                G   EAL   K M 
Sbjct: 247 NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD 306

Query: 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486
            EP+     S L AC +   +D G  +  R++E    +      L ++YA  G  +D  R
Sbjct: 307 VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGSLDDARR 366

Query: 487 VRELMKEK 494
           V   MK +
Sbjct: 367 VFNRMKTR 374



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 36/241 (14%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           ++  G++++     S++ A + L AL  G+++H H++     + + L+ +L+ MY+KCGS
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           L  ++RVF+ M  + + +W++++  Y++ G G   V L+  M  E  V+P+ VT+   L 
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEG-VEPNVVTFACALG 119

Query: 371 GC-SHGGMEDRGLAVFH-------------------------EIVDCKDGFEP----EIE 400
           GC S  G+ D G A+                           E+V+ +  FE      + 
Sbjct: 120 GCASVAGLAD-GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR 178

Query: 401 HYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456
            Y  ++    +AG   EALE    M      EP A    ++LGA     N++ G  V + 
Sbjct: 179 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 238

Query: 457 L 457
           L
Sbjct: 239 L 239



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G   +AL     + +E     + + LNAC     L  G+ +H  +++     P  + T 
Sbjct: 292 HGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASP-QMETS 350

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           L+  Y +C  L DAR++F+ M+ R+  S  AMI+A++Q     +AL ++ RM +     +
Sbjct: 351 LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPAD 410

Query: 159 EFTFATVLTSCA-GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
             TF +VL +C+  +   +      SL++       +     ++D+  ++GR+ +A  + 
Sbjct: 411 GITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELV 470

Query: 218 ECLP-ERDVVSCTAIISGYAQLG 239
           E +P + D V+   ++SG  + G
Sbjct: 471 ETMPYQTDAVAWMTLLSGCKRHG 493


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/560 (38%), Positives = 323/560 (57%), Gaps = 41/560 (7%)

Query: 78  QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFD--EMRERNVVSWTAMISAYS 135
           ++VHA +IKT     +   TR+ +          A+++F   E ++     W + + A +
Sbjct: 78  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 137

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           +     +A+ LF R+ + D  P+ FT ++VL +C        G+ +H ++ K  F S   
Sbjct: 138 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSW-- 195

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
                                            T++I+GY Q G  +EAI LF K++  G
Sbjct: 196 ---------------------------------TSMIAGYVQCGKAKEAIHLFAKMEEAG 222

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  N VT  +VL A + L AL  G ++H +  R      V + N+LIDMY KCG L  + 
Sbjct: 223 VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEAC 282

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           +VF+ M ERTV+SW+AM+ G + HG   E + LF+ M +   ++P+ VT++ +L  CSH 
Sbjct: 283 KVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG-IEPNGVTFIGLLHACSHM 341

Query: 376 GMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
           G+   G   F  +   +D G  P+IEHYGC+VD+L RAG + EA EFI NMP +P   + 
Sbjct: 342 GLISEGRRFFASMT--RDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVW 399

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           G+LLGACRVH NV++ E   + L+E++P N G YV+LSN+YA AGRWED  RVR+ MK++
Sbjct: 400 GALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 459

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDV 554
            V K PG S I +D ++H F A + SHP  E++  + ++L  + +  GYVP+ S VL D+
Sbjct: 460 QVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDI 519

Query: 555 DEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSL 614
           +E +K K +  HSEKLAL FGL+ TP   PIR++KNLRIC DCH+  K +S +  R++ +
Sbjct: 520 EEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVV 579

Query: 615 RDKNRFHHIVEGTCSCGDYW 634
           RD+NRFH   + +CSC DYW
Sbjct: 580 RDRNRFHCFNDNSCSCRDYW 599



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L AC +   L  G R+H +  +  ++  V +   LI  Y KC CL +A K+F+EM ER
Sbjct: 232 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 291

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIH 182
            VVSW+AMI   +    + EAL LF  M +   EPN  TF  +L +C+       G++  
Sbjct: 292 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 351

Query: 183 SLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVSCTAIISG---YAQ 237
           + + +       I     ++D+ ++AG +HEA      +P + + V   A++     +  
Sbjct: 352 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 411

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272
           + + EEAI+    L+++ +   Y    S + A +G
Sbjct: 412 VEMAEEAIKHL--LELDPLNDGYYVVLSNIYAEAG 444


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 352/592 (59%), Gaps = 26/592 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYR---PPVYLRTRLIVFYNKCECLSDARKMFDEM 119
           T+L  C +   L+   ++HA  ++T Y      ++L  +++   +    ++ A ++FD +
Sbjct: 30  TVLQTCSDMSQLK---QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 120 RERNVVSWTAMISAYSQK-AHSFEALNLFIRML-RSDTEPNEFTFATVLTSCAGAFGFEL 177
              +   W  +I A +   +   EA  L+ +ML R ++ P++ TF  VL +CA  FGF  
Sbjct: 87  ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 178 GKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237
           GKQ+H  I+K  F   +YV + L+ +Y   G +  AR VF+ +PER +VS  ++I    +
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR---FEIPSY 294
            G  + A++LFR++Q       Y T  SVL+A +GL +L  G   H+ +LR    ++   
Sbjct: 207 FGEYDSALQLFREMQRSFEPDGY-TMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMD 265

Query: 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354
           V+++NSLI+MY KCGSL  + +VF  M +R + SWNAM++G++ HG   E +  F+ M +
Sbjct: 266 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 325

Query: 355 ENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GFEPEIEHYGCVVDMLGRA 412
           + + V+P+SVT++ +L  C+H G  ++G   F  +V  +D   EP +EHYGC+VD++ RA
Sbjct: 326 KRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMV--RDYCIEPALEHYGCIVDLIARA 383

Query: 413 GRVGEALEFIKNMPFEPTAAILGSLLGAC-RVHYNVDIGEFVGQRLMEIEPEN------- 464
           G + EA++ + +MP +P A I  SLL AC +   +V++ E + + ++  + +N       
Sbjct: 384 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 443

Query: 465 AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524
           +G YV+LS +YASA RW DV  VR+LM E  + K+PG S IE++ I H F A D SHP  
Sbjct: 444 SGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQT 503

Query: 525 EELSAKVKQLSVKFKEAGYVPDMS-CVLYD-VDEEQKEKVLLGHSEKLALTFGLIGTPEG 582
           +++  ++K +  + +  GY+PD S   L D  ++  KE  L  HSE+LA+ FGLI  P  
Sbjct: 504 KQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQ 563

Query: 583 APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            PIR+ KNLR+C DCH   K +SKV+  ++ +RD+ RFHH  +G+CSC DYW
Sbjct: 564 TPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 285/437 (65%), Gaps = 2/437 (0%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           +++L  YAK G +  AR +F+ + ERD V    +I GY Q G+  EA+ LFR++      
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N VT  SVL+A   L AL  G+ VHS++    I   V +  +L+DMYSKCGSL  +R V
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           FD + ++ V++WN+M+VGY+ HG  +E ++LF  M     + P ++T++ +LS C H G 
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGW 306

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
              G  +F+++ D + G EP+IEHYGC+V++LGRAG V +A E +KNM  EP   + G+L
Sbjct: 307 VTEGWDIFNKMKD-EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 365

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGACR+H  + +GE + + L++    N+G Y++LSN+YA+ G W+ V R+R +MK+  V 
Sbjct: 366 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 425

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+PG S IE++  +H F A   +HP R+E+   +++++   K  GY P    VL+D+ E 
Sbjct: 426 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 485

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           +KE+ L  HSEKLA+ FGLI T  G  I+++KNLR+C DCH   K +SK+ GRK+ +RD+
Sbjct: 486 EKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDR 545

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH V G+CSCGDYW
Sbjct: 546 NRFHHFVNGSCSCGDYW 562



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 149/288 (51%), Gaps = 5/288 (1%)

Query: 67  ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVS 126
           A ++   LRG       +  T     +   T ++  Y K   L  AR +FD M ER+ V 
Sbjct: 98  AIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 157

Query: 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186
           W  MI  Y+Q     EAL LF RML++  +PNE T  +VL++C      E G+ +HS I 
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217

Query: 187 KSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
            +  + +++VG++L+DMY+K G + +AR VF+ + ++DVV+  ++I GYA  G  +EA++
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 277

Query: 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL-RFEIPSYVVLQNSLIDMY 305
           LF+ +   G+    +T+  +L+A      +  G  + + +   + I   +     ++++ 
Sbjct: 278 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 337

Query: 306 SKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG---MGREVVELF 349
            + G +  +  +  NM+ E   + W  +L     HG   +G ++VEL 
Sbjct: 338 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 385



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++L+AC     L  G+ VH+++     +  V++ T L+  Y+KC  L DAR +FD++ ++
Sbjct: 195 SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 254

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI- 181
           +VV+W +MI  Y+    S EAL LF  M R    P   TF  +L++C  +     G  I 
Sbjct: 255 DVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF 314

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQ 237
           + +  +   E  I     ++++  +AG + +A  + + +  E D V    ++     + +
Sbjct: 315 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 374

Query: 238 LGLDEEAIELFRKLQVEGMISNYVTY 263
           + L E+ +EL     V+  ++N  TY
Sbjct: 375 IALGEKIVELL----VDQNLANSGTY 396


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/507 (41%), Positives = 316/507 (62%), Gaps = 2/507 (0%)

Query: 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187
           +A++  Y Q AH  EA+    +               VL  CA      LG Q+H+  +K
Sbjct: 152 SAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALK 211

Query: 188 SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL 247
              E ++YVGS+L+DMY K    HEA  VFE LPE+++VS TAI++ Y Q  L E+A++L
Sbjct: 212 RRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQL 271

Query: 248 FRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307
           F  +++EG+  N  TYA  L + +GLA L +G  + +  ++      + + N+L++MYSK
Sbjct: 272 FLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSK 331

Query: 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367
            GS+  +RRVF +M  R V+SWN++++GY+ HG  RE +E F+ M    +V P  VT++ 
Sbjct: 332 SGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV-PSYVTFIG 390

Query: 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
           VLS C+  G+ D G   +  I+  + G +P  EHY C+V +L R GR+ EA  FI++   
Sbjct: 391 VLSACAQLGLVDEGF-YYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCI 449

Query: 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487
                   SLL +C+V+ N  +G  V +++ +++P++ G YV+LSN+YA A RW+ V +V
Sbjct: 450 GTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKV 509

Query: 488 RELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDM 547
           R LM+E  V K+PG SWI++   +H F + D+ HP  E+++ K+++L  K K  GYVP++
Sbjct: 510 RRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNI 569

Query: 548 SCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKV 607
           +  L+DV++EQKE+ L+ HSEKLAL FGLI TP+G  IR++KN+RIC DCH   K +S  
Sbjct: 570 AVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLA 629

Query: 608 YGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            GR++ +RD  RFH I +G CSC DYW
Sbjct: 630 TGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 162/313 (51%), Gaps = 13/313 (4%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123
           +L  C + + +  G +VH   +K      VY+ + L+  Y KC+   +A ++F+ + E+N
Sbjct: 189 VLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKN 248

Query: 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           +VSWTA+++AY+Q     +AL LF+ M      PNEFT+A  L SCAG    + G  + +
Sbjct: 249 IVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGA 308

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
             +K+     + V ++L++MY+K+G + +AR VF  +P RDVVS  +II GYA  G   E
Sbjct: 309 CTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRARE 368

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLI 302
           A+E F  +     + +YVT+  VL+A + L  +  G    + +++   +         ++
Sbjct: 369 AMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMV 428

Query: 303 DMYSKCGSLTYSRRVFD-NMSERTVISWNAMLVG---YSKHGMGREVVE-LFNLMREENK 357
            +  + G L  + R  + N     V++W ++L     Y  +G+G  V E +F L      
Sbjct: 429 GLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQL------ 482

Query: 358 VKPDSVTYLAVLS 370
            KP  V    +LS
Sbjct: 483 -KPKDVGTYVLLS 494



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 13/216 (6%)

Query: 46  LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK 105
            ++M   G+      Y   LN+C    TL+ G  + A  +KT +   + +   L+  Y+K
Sbjct: 272 FLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSK 331

Query: 106 CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165
              + DAR++F  M  R+VVSW ++I  Y+    + EA+  F  ML ++  P+  TF  V
Sbjct: 332 SGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGV 391

Query: 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVG----SSLLDMYAKAGRIHEARGVFE--C 219
           L++CA     + G    ++++K   E  +  G    + ++ +  + GR+ EA    E  C
Sbjct: 392 LSACAQLGLVDEGFYYLNIMMK---EVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNC 448

Query: 220 LPERDVVSCTAIISG---YAQLGLDEEAIELFRKLQ 252
           +   DVV+  +++S    Y   GL     E   +L+
Sbjct: 449 IGT-DVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLK 483



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 79/147 (53%), Gaps = 10/147 (6%)

Query: 175 FELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 233
             LGK +H+ ++++  F+   Y  ++L+ +Y K GR+  AR VF+ +P R+ VS   ++S
Sbjct: 32  LSLGKAVHARVVRAARFDVVQY--NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMS 89

Query: 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293
           GYA  G   +A+ L R   V     N    +S + A + + +   G+Q H + ++  +  
Sbjct: 90  GYASSGRHRDALALLR---VADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAE 146

Query: 294 YVVLQNSLIDMYSKCG----SLTYSRR 316
           +  + ++++ MY +C     ++ YS++
Sbjct: 147 HPYVCSAVLHMYCQCAHMDEAVKYSKK 173



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 276 LGHGKQVHSHVLR---FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAM 332
           L  GK VH+ V+R   F++  Y    N+LI +Y KCG L  +R+VFD M  R  +S N +
Sbjct: 32  LSLGKAVHARVVRAARFDVVQY----NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLL 87

Query: 333 LVGYSKHGMGREVVELFNL 351
           + GY+  G  R+ + L  +
Sbjct: 88  MSGYASSGRHRDALALLRV 106


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 338/561 (60%), Gaps = 43/561 (7%)

Query: 39  NGQLTKALIEMATL---GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL 95
           +G+  +AL+  A +   G  +    + + L+AC   + L+ G ++H+ + ++ Y   VY+
Sbjct: 129 HGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYM 188

Query: 96  RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155
            + L+  Y+KC  +  A+ +FDEM  R+ VSW ++I+ Y Q     EAL +F+ M++   
Sbjct: 189 GSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV 248

Query: 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FESHIYVGSSLLDMYAKAGRIHEAR 214
           EP+E T A+V+++CA     + G+QIH+ ++K + F + + +G++LLDMYAK  RI+EAR
Sbjct: 249 EPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEAR 308

Query: 215 GVFECLPERDVVSCTAIISGYA-------------------------------QLGLDEE 243
            +F+ +P R VVS T+++SGYA                               Q G +EE
Sbjct: 309 IIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEE 368

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL----RFEI--PSYVVL 297
           A+ LFR L+ E +   + T+ ++L A + LA L  G+Q HSHVL    RF+    S V +
Sbjct: 369 ALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFV 428

Query: 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENK 357
            NSLIDMY KCGS+    RVF +M E+  +SWNAM+VGY+++G G + +E+F  M E  +
Sbjct: 429 GNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGE 488

Query: 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417
             PD VT + VL  CSH G+ D G   F  +   + G  P  +HY C+VD+LGRAG + E
Sbjct: 489 A-PDHVTMIGVLCACSHAGLLDEGRYYFRSMT-AQHGLMPLKDHYTCMVDLLGRAGYLEE 546

Query: 418 ALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
           A   I+ M  +P A + GSLL AC+VH N+ +GE+V ++L+E++PEN+G YV+LSN+YA 
Sbjct: 547 AKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAE 606

Query: 478 AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
              W++V RVR+LM+++ V K PG SWIE+   L+ F   D+ H  ++E+   ++ +  +
Sbjct: 607 NRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQ 666

Query: 538 FKEAGYVPDMSCVLYDVDEEQ 558
            K+AGYVP +    +D DEEQ
Sbjct: 667 MKQAGYVPYVGSNEFDEDEEQ 687



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 240/475 (50%), Gaps = 82/475 (17%)

Query: 61  YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
           +  LLN C   R+ R   RVHA +IK+ +    +++ RLI  Y KC C+  ARK+FD M 
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRML 81

Query: 121 ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP----------------------- 157
           ERN+ SW ++I A+++     +A+++F +M + D                          
Sbjct: 82  ERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQ 141

Query: 158 --------NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209
                   NE++F + L++CAG    +LG QIHSL+ +SN+ S +Y+GS+L+DMY+K GR
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201

Query: 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           +  A+ VF+ +  R  VS  ++I+ Y Q G  +EA+++F ++   G+  + VT ASV++A
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261

Query: 270 LSGLAALGHGKQVHSHVLRF-EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328
            + ++A+  G+Q+H+ V++  E  + ++L N+L+DMY+KC  +  +R +FD M  R+V+S
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321

Query: 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388
             +M+ GY+K    +    +F+     N +  D +T+ A+++GC+  G  +  L +F   
Sbjct: 322 ETSMVSGYAKASKVKVARYMFS-----NMMVKDVITWNALIAGCTQNGENEEALILF--- 373

Query: 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448
                                            +K     PT    G+LL AC    ++ 
Sbjct: 374 -------------------------------RLLKRESVWPTHYTFGNLLNACANLADLQ 402

Query: 449 IGEFV-------GQRLMEIEPEN--AGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           +G          G R    E  +   GN +I  ++Y   G  E+  RV + M EK
Sbjct: 403 LGRQAHSHVLKHGFRFQYGEDSDVFVGNSLI--DMYMKCGSVENGCRVFQHMLEK 455


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 330/554 (59%), Gaps = 35/554 (6%)

Query: 99  LIVFYNKCECLSDARKMFDEMRER----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154
           ++  Y++     DA  +F +MRE     +VV+W+++IS Y+Q+    EA+++F +M    
Sbjct: 111 MVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCR 170

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-------SNFESHIYVGSSLLDMYAKA 207
             PN  T  ++L++CA       GK+ H   +K       ++    + V ++L+DMYAK 
Sbjct: 171 CRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKC 230

Query: 208 GRIHEARGVFE--CLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-QVEG-MISNYVTY 263
             +  AR +F+  C  +RDVV+ T +I GYAQ G    A++LF ++ +++  ++ N  T 
Sbjct: 231 KSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTI 290

Query: 264 ASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVV-LQNSLIDMYSKCGSLTYSRRVFDNM 321
           + VL A + LAAL  GKQ+H++VLR   I S V+ + N LIDMYSK G +  ++ VFD+M
Sbjct: 291 SCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSM 350

Query: 322 SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           S+R  +SW ++L GY  HG    +               D +T+L VL  CSH GM DRG
Sbjct: 351 SKRNAVSWTSLLTGYGMHGAALVL---------------DGITFLVVLYACSHSGMVDRG 395

Query: 382 LAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440
           + +F+ +   KD   +P +EHY C+ D+ GRAGR+ EA   I +M  EPT  +  +LL A
Sbjct: 396 IDLFYRM--SKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSA 453

Query: 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500
           CR H N ++ EF  ++L+E++ +N G Y +LSN+YA+A RW+DV R+R LMK   + K P
Sbjct: 454 CRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRP 513

Query: 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKE 560
           G SW++  + + TF+  DR+H   +++   +  L  + K  GYVP  +  L+DVD+E+K 
Sbjct: 514 GWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKG 573

Query: 561 KVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRF 620
             LL HSEKLAL + ++  P GAPIR+ KNLRIC D H+   ++S +   ++ LRD +RF
Sbjct: 574 DQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRF 633

Query: 621 HHIVEGTCSCGDYW 634
           H    G+CSC  YW
Sbjct: 634 HQFKNGSCSCKGYW 647



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 202/453 (44%), Gaps = 96/453 (21%)

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVLTSCAGAFGFELGKQIHS 183
           VSW +++S YS      +A+ LF  M +     P+      +L   +G  GF        
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNIL-PVSGFLGF-------- 74

Query: 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243
                      +VG++L+DMYAK G++ +A  VFE +  +DVV+  A+++GY+Q G  E+
Sbjct: 75  -----------FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 244 AIELFRKLQVE----------GMISNY-------------------------VTYASVLT 268
           A+ LF K++ E           +IS Y                         VT  S+L+
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 269 ALSGLAALGHGKQVHSHVLRF-------EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321
           A + + AL HGK+ H + ++F       +    + + N+LIDMY+KC SL  +R +FD +
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 322 --SERTVISWNAMLVGYSKHGMGREVVELFNLM-REENKVKPDSVTYLAVLSGCSHGGME 378
              +R V++W  M+ GY++HG     ++LF+ M + +N + P+  T   VL  C+     
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 379 DRGLAVFHEIVDCKDGFEPEIEHYG-CVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
             G  + H  V  +   + ++     C++DM  ++G V  A     +M      +    L
Sbjct: 304 KFGKQI-HAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLL 362

Query: 438 LG--------------------ACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNL 474
            G                    AC     VD G  +  R+ +   ++P    +Y  +++L
Sbjct: 363 TGYGMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDP-GVEHYACMADL 421

Query: 475 YASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507
           +  AGR  + TR   L+ + ++   P   WI L
Sbjct: 422 FGRAGRLCEATR---LINDMSMEPTP-VVWIAL 450



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 25/157 (15%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           +L AC     L+ G+++HA++++        +++   LI  Y+K   +  A+ +FD M +
Sbjct: 293 VLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSK 352

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
           RN VSWT++++ Y        AL L           +  TF  VL +C+ +   + G  +
Sbjct: 353 RNAVSWTSLLTGYGMHG---AALVL-----------DGITFLVVLYACSHSGMVDRGIDL 398

Query: 182 -----HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
                   ++    E +    + + D++ +AGR+ EA
Sbjct: 399 FYRMSKDFVVDPGVEHY----ACMADLFGRAGRLCEA 431


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 319/526 (60%), Gaps = 10/526 (1%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168
           LS A  +F  +   NV +W  M   Y++  +   AL  + +M+ S  EP+  T+  +L +
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 228
            + +     G+ IHS+ I++ FES ++V +SLL +YA  G    A  VFE + +RD+V+ 
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            ++I+G+A  G   EA+ LFR++  EG+  +  T  S+L+A + L AL  G++VH ++L+
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 259

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
             +     + NSL+D+Y+KC ++           ER  +SW +++VG + +G G E +EL
Sbjct: 260 VGLRENSHVTNSLLDLYAKCDAIW--------EXERNAVSWTSLIVGLAVNGFGEEALEL 311

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408
           F  M  +  V P  +T++ VL  CSH GM D G   F  + + + G  P IEHYGC+VD+
Sbjct: 312 FREMEGQGLV-PSEITFVGVLYACSHCGMLDEGFDYFRRMKE-EFGIMPRIEHYGCMVDL 369

Query: 409 LGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468
           L RAG V +A E+I+NMP +P A    +LLGAC +H ++ +GE     L+++EP+++G+Y
Sbjct: 370 LSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDY 429

Query: 469 VILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELS 528
           V+LSNLY S  RW DV  +R  M +  V K  G S +EL   ++ F   +RSHP  +++ 
Sbjct: 430 VLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVY 489

Query: 529 AKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVI 588
           A +++++   K  GYVP  + VL D++EE+KE+ L  HSEK A+ F  + T  G  IRV+
Sbjct: 490 ALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVM 549

Query: 589 KNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
           KNLR+C DCH   K ++KVY R++ +RD+ RFHH   G+CSC DYW
Sbjct: 550 KNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 10/295 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M    +E     Y  LL A      +R G+ +H+  I+  +   V+++  L+  Y  C 
Sbjct: 120 QMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG 179

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
               A  +F+ MR+R++V+  ++I+ ++      EAL LF  M     EP+ FT  ++L+
Sbjct: 180 DTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLS 239

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           + A     ELG+++H  ++K     + +V +SLLD+YAK   I E         ER+ VS
Sbjct: 240 ASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVS 291

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            T++I G A  G  EEA+ELFR+++ +G++ + +T+  VL A S    L  G      + 
Sbjct: 292 WTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMK 351

Query: 288 -RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLVGYSKHG 340
             F I   +     ++D+ S+ G +  +     NM  +   ++W  +L   + HG
Sbjct: 352 EEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/579 (37%), Positives = 327/579 (56%), Gaps = 60/579 (10%)

Query: 47  IEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106
           + M   G+E     +  LL +C      + G+++H H++K       ++ T LI  Y + 
Sbjct: 121 VRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQN 180

Query: 107 E-------------------------------CLSDARKMFDEMRERNVVSWTAMISAYS 135
                                           CL DAR++F+E+  R+ VSW AMI+ Y+
Sbjct: 181 GELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYA 240

Query: 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY 195
           Q     EAL  F  M R++  PNE T  TVL++CA +   ELG  + S I      S++ 
Sbjct: 241 QSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLR 300

Query: 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
           + ++L+DMY+K G + +AR +FE + E+D++S   +I GY+ +   +EA+ LFRK+Q   
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHV-LRFEIPSYVVLQNSLIDMYSKCGSLTYS 314
           +  N VT+ S+L A + L AL  GK +H+++  +F   +   L  SLIDMY+KCG++  +
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420

Query: 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374
           ++VF  M  +++ SWNAM+ G + HG     +ELF  MR+E   +PD +T++ VLS CSH
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEG-FEPDDITFVGVLSACSH 479

Query: 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL 434
            G+ + G   F  +V+  D   P+++HYGC++D+LGRAG   EA   +KNM  +P  AI 
Sbjct: 480 AGLVELGRQCFSSMVEDYD-ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIW 538

Query: 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494
           GSLLGACRVH NV++GEF  + L E+EPEN G YV+LSN+YA+AGRW+DV R+R  + +K
Sbjct: 539 GSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDK 598

Query: 495 AVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKE-AGYVPDMSCVLYD 553
            + K                          +++   + ++   F E  G VPD S VLYD
Sbjct: 599 GMKK-------------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYD 633

Query: 554 VDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLR 592
           +DEE KE  L  HSEKLA+ FGLI T     IR++KNLR
Sbjct: 634 MDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 173/400 (43%), Gaps = 71/400 (17%)

Query: 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA--GRIHEARGVFECLP 221
           T+L++C     F+  KQIHS IIK+   +  +  S L++  A +  G +  A  +FE + 
Sbjct: 37  TLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281
           + +      +I G +       AI+ + ++ + G+  N  T+  +L + + + A   GKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY---------------------------- 313
           +H HVL+  + S   +  SLI+MY++ G L Y                            
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 314 ---SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
              +RR+F+ +  R  +SWNAM+ GY++ G   E +  F  M+  N V P+  T + VLS
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN-VAPNESTMVTVLS 272

Query: 371 GCSHGG-----------MEDRGLA----VFHEIVD----------CKDGF----EPEIEH 401
            C+  G           +ED GL     + + ++D           +D F    E +I  
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332

Query: 402 YGCVVDMLGRAGRVGEALEFIKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           +  ++          EAL   + M     EP      S+L AC     +D+G+++   + 
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 459 E--IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496
           +  +   N   +  L ++YA  G  E   +V   MK K++
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/606 (35%), Positives = 347/606 (57%), Gaps = 38/606 (6%)

Query: 65  LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNV 124
           L+AC     L  G+++H+ ++ +     + +   L+  Y KC+ +  A K+FD M  R+V
Sbjct: 17  LDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDV 76

Query: 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDT----------------------------- 155
           VSWTAM++ Y+Q     +AL++F  M R D                              
Sbjct: 77  VSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELE 136

Query: 156 --EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH-IYVGSSLLDMYAKAGRIHE 212
               NEFT  ++L +C G    +L +QIH+      F  +   VG+S+++MYA+ G + +
Sbjct: 137 GLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLD 196

Query: 213 ARGVFECLPERDVVSCTAIISGYAQL--GLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270
            +  F+ L E+ +V+ + +++ YAQ   G    A + F++++ EG+    VT+ S L A 
Sbjct: 197 TKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDAC 256

Query: 271 SGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISW 329
           + +A L HG+ +H        + + +VL N++I+MY KCGS + ++ VFD M E+ +ISW
Sbjct: 257 AAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISW 316

Query: 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389
           N+++V Y+ +G   E +     M  +    PDS T +++L G SH G+ +RG+  F   +
Sbjct: 317 NSLIVAYAHNGHALEALSSLQEMLLQG-FDPDSGTSVSILYGLSHAGLLERGVEHFRSSI 375

Query: 390 DCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG-SLLGACRVHYNVD 448
               G EP      C+VD+L R G +  A E I   P      I   +LL AC+ + +  
Sbjct: 376 Q-DHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQ 434

Query: 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508
            G    +R+ E+EP+++G++V+L+NLYAS GRW D +R+R++M+  +V K+PG SWIEL 
Sbjct: 435 RGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELS 494

Query: 509 QILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSE 568
             +H F + +  HP   E+  ++++L+++ +EAGYVPD + V++DV+E  KE++L  HSE
Sbjct: 495 GSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSE 554

Query: 569 KLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTC 628
           +LA+ FGL+ T  G  IRV+KNLR+C DCH   K +S V GR++ +RD +RFHH   G C
Sbjct: 555 RLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQC 614

Query: 629 SCGDYW 634
           SCGD+W
Sbjct: 615 SCGDFW 620



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 36/306 (11%)

Query: 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214
           T P++  F   L +CA +   + G+QIHS ++ S   S+I + +SL++MY K   +  A 
Sbjct: 6   TRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAE 65

Query: 215 GVFECLPERDVVSCTAIISGYAQLGLD-------------------------------EE 243
            VF+ +  RDVVS TA+++ YAQ G                                 ++
Sbjct: 66  KVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQD 125

Query: 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH-SHVLRFEIPSYVVLQNSLI 302
           A+ELF  +++EG+ SN  T  S+L A  GL  L   +Q+H          +   + NS++
Sbjct: 126 ALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVV 185

Query: 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY--SKHGMGREVVELFNLMREENKVKP 360
           +MY++CGSL  +++ FD++ E+ +++W+ ML  Y  SK G GR   + F  M  E  +KP
Sbjct: 186 NMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEG-IKP 244

Query: 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420
             VT+++ L  C+     + G ++ H         E  +     +++M G+ G   +A  
Sbjct: 245 GEVTFVSALDACAAMATLEHGRSM-HRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKL 303

Query: 421 FIKNMP 426
               MP
Sbjct: 304 VFDQMP 309



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           +Q EG   + V +   L A +    L HG+Q+HS V+   + S +++ NSL++MY KC  
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQD 60

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  + +VFD M  R V+SW AML  Y+++G   + + +F  M      + D V++ AV++
Sbjct: 61  VPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMP-----RKDDVSWNAVIN 115

Query: 371 GCSHGGMEDRGLAVFH 386
                      L +FH
Sbjct: 116 ASVGNSKFQDALELFH 131


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/609 (34%), Positives = 337/609 (55%), Gaps = 44/609 (7%)

Query: 64  LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC----------------- 106
           +L  C     +  G+R+H  ++++   P V L   ++  Y KC                 
Sbjct: 132 VLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKD 191

Query: 107 ---------ECLSD-----ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152
                     CL D     A ++FDE   R+V SW  ++S   +  H+ EAL    +M+R
Sbjct: 192 ATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVR 251

Query: 153 SDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212
           +    + +T++ V          +LG+Q+H  ++ +  E   +VG SL+DMY K G +  
Sbjct: 252 AGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMES 311

Query: 213 ARGVFE---CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
           A  +F+      E    + + +++GY Q G +EEA+E FR++  EG+ +      SV +A
Sbjct: 312 ALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASA 371

Query: 270 LSGLAALGHGKQVHSHV----LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325
            +    +  G+QVH  V     RF+ P    L ++++DMYSK GSL  + R+F +   + 
Sbjct: 372 CANAGMVEQGRQVHGFVEKLGHRFDAP----LASAIVDMYSKSGSLEDACRIFRSAQTKN 427

Query: 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385
           V  W  ML  Y+ HG GR  +E+F+ M+ E K+ P+ +T +AVLS CSH G+   G   F
Sbjct: 428 VALWTTMLCSYASHGQGRMALEIFSRMKAE-KIMPNEITLVAVLSACSHSGLVSDGYHYF 486

Query: 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY 445
           + ++  + G  P  EHY C+VD+ GRAG + +A  FI+       A +  +LL ACR+H 
Sbjct: 487 N-LMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHK 545

Query: 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505
           +++  +   ++L+++E  +AG+YV++SN+YA+  +W D  ++R  MKE+ V K PG+SWI
Sbjct: 546 HIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWI 605

Query: 506 ELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLG 565
            L  ++H F A D SHP   E+ A +++L  + KE GY      V++D++EEQ+E  L  
Sbjct: 606 HLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKF 665

Query: 566 HSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVE 625
           HSEKLA+ FG+I TP G  +R+ KNLR+C DCH   KF+++   R++ +RD  RFHH  +
Sbjct: 666 HSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKD 725

Query: 626 GTCSCGDYW 634
           G CSC D+W
Sbjct: 726 GQCSCEDFW 734



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 162/352 (46%), Gaps = 39/352 (11%)

Query: 109 LSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR--SDTEPNEFTFATVL 166
           L +A ++FD    R++ +WT++IS  +++    + +  F  ML     T PN F  A VL
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF--------- 217
             CAG    E G++IH  I++S     + + +++LDMYAK G    AR  F         
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 218 -------ECLPE---------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255
                   CL +               RDV S   I+SG  + G   EA+   +++   G
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG 253

Query: 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  +  TY+ V      L++   G+Q+H  V+   +     +  SL+DMY KCG +  + 
Sbjct: 254 VTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESAL 313

Query: 316 RVFDNMSERT---VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372
            +FD  S+ T     +W+ M+ GY ++G   E +E F  M  E  V        +V S C
Sbjct: 314 SIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREG-VPAGQFILTSVASAC 372

Query: 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424
           ++ GM ++G  V H  V+ K G   +      +VDM  ++G + +A    ++
Sbjct: 373 ANAGMVEQGRQV-HGFVE-KLGHRFDAPLASAIVDMYSKSGSLEDACRIFRS 422



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
           ++ +AC N   +  G++VH  + K  +R    L + ++  Y+K   L DA ++F   + +
Sbjct: 367 SVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTK 426

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA-------GAFGF 175
           NV  WT M+ +Y+       AL +F RM      PNE T   VL++C+       G   F
Sbjct: 427 NVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYF 486

Query: 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
            L ++ + ++   N E +    + ++D+Y +AG + +A+   E
Sbjct: 487 NLMQEEYGIV--PNTEHY----NCMVDLYGRAGLLDKAKNFIE 523


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 347/577 (60%), Gaps = 8/577 (1%)

Query: 63   TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            + L++C +   +  G+++H   +K      V +   L+  Y +  C ++  K+F  M E 
Sbjct: 966  STLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEY 1025

Query: 123  NVVSWTAMISAYSQKAHSF-EALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            + VSW ++I A S    S  +A+  F+ M+R     +  TF  +L++ +     E+  QI
Sbjct: 1026 DQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 1085

Query: 182  HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGL 240
            H+L++K        +G++LL  Y K G ++E   +F  + E RD VS  ++ISGY    L
Sbjct: 1086 HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNEL 1145

Query: 241  DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS 300
              +A++L   +  +G   +  T+A+VL+A + +A L  G +VH+  +R  + S VV+ ++
Sbjct: 1146 LHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSA 1205

Query: 301  LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360
            L+DMYSKCG + Y+ R F+ M  R V SWN+M+ GY++HG G + ++LF  M  + +  P
Sbjct: 1206 LVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ-PP 1264

Query: 361  DSVT-YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419
            D V   L VLS CSH G  + G   F  + +      P +EH+ C+VD+LGRAG++ E  
Sbjct: 1265 DHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYR-LSPRVEHFSCMVDLLGRAGKLDEVG 1323

Query: 420  EFIKNMPFEPTAAILGSLLGAC-RVH-YNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477
            +FI +MP +P   I  ++LGAC R +  N ++G    + L+E+EP+NA NYV+L+N+YAS
Sbjct: 1324 DFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYAS 1383

Query: 478  AGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVK 537
              +WEDV + R  MKE AV K+ G SW+ +   +H F A D+ HP ++ +  K+++L+ K
Sbjct: 1384 GEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRK 1443

Query: 538  FKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDC 597
             ++AGY+P     L+D++ E KE++L  HSEK+A+ F ++      PIR++KNLR+C DC
Sbjct: 1444 MRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDC 1502

Query: 598  HNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            H+   ++SK+ GR++ LRD NRFHH  +G CSCGDYW
Sbjct: 1503 HSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 11/392 (2%)

Query: 43   TKALIEMATLGLEMRFEEYDTLLNA----CVNQRTLRGGQRVHAHMIKTCYRP-PVYLRT 97
             K   EM  L + +  + Y  LL+A     V +   R G+ VHAH+I+T      V +  
Sbjct: 841  AKVFHEMKDL-VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGN 899

Query: 98   RLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157
             L+  Y K   ++DA  +F+ M E++ VSW ++IS   Q   S +A   F+RM R+ + P
Sbjct: 900  GLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMP 959

Query: 158  NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217
            + FT  + L+SCA      LG+QIH   +K   ++ + V ++LL +YA+ G   E   VF
Sbjct: 960  SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF 1019

Query: 218  ECLPERDVVSCTAIISGYAQLGLD-EEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
              +PE D VS  ++I   +       +A++ F ++   G   + VT+ ++L+A+S L+  
Sbjct: 1020 SLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLH 1079

Query: 277  GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-RTVISWNAMLVG 335
                Q+H+ VL++ +     + N+L+  Y KCG +    ++F  MSE R  +SWN+M+ G
Sbjct: 1080 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 1139

Query: 336  YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395
            Y  + +  + ++L   M ++ + + DS T+  VLS C+     +RG+ V       +   
Sbjct: 1140 YIHNELLHKAMDLVWFMMQKGQ-RLDSFTFATVLSACASVATLERGMEV--HACGIRACM 1196

Query: 396  EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF 427
            E ++     +VDM  + GR+  A  F + MP 
Sbjct: 1197 ESDVVVGSALVDMYSKCGRIDYASRFFELMPL 1228



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 189/392 (48%), Gaps = 29/392 (7%)

Query: 12  SSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMA----------TLGLEMRFEEY 61
           S+ TFT    T   FPP    L    +  Q TK+L ++              L    E +
Sbjct: 490 STPTFTT--FTASPFPPLKSLLFKPLNPNQCTKSLQDLVDHYKTSTSHCNTTLFSSSETF 547

Query: 62  DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE 121
           ++L+N           + +H   IK  +   ++L   LI  Y +   L  A+K+FDEM  
Sbjct: 548 ESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSN 607

Query: 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGK 179
           RN+V+W  +IS Y+Q     EA   F  M+R+   PN + F + L +C  +G  G +LG 
Sbjct: 608 RNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGV 667

Query: 180 QIHSLIIKSNFESHIYVGSSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQL 238
           QIH LI K+ + S + V + L+ MY       ++AR VF+ +  R+ +S  +IIS Y++ 
Sbjct: 668 QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRR 727

Query: 239 GLDEEAIELFRKLQVEGM----ISNYVTYASVLTALS-----GLAALGHGKQVHSHVLRF 289
           G    A +LF  +Q EG+      N  T+ S++TA       GL  L   +Q+ + V + 
Sbjct: 728 GDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVL---EQMLARVEKS 784

Query: 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349
                + + ++L+  +++ G    ++ +F+ M  R V+S N ++VG  K   G    ++F
Sbjct: 785 GFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVF 844

Query: 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381
           + M++   +  DS  Y+ +LS  S   + + G
Sbjct: 845 HEMKDLVGINSDS--YVVLLSAFSEFSVLEEG 874



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 166/333 (49%), Gaps = 13/333 (3%)

Query: 38   SNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT 97
            S  Q  K  +EM   G  +    +  +L+A  +        ++HA ++K C      +  
Sbjct: 1043 SVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGN 1102

Query: 98   RLIVFYNKCECLSDARKMFDEMRE-RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
             L+  Y KC  +++  K+F  M E R+ VSW +MIS Y       +A++L   M++    
Sbjct: 1103 ALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR 1162

Query: 157  PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
             + FTFATVL++CA     E G ++H+  I++  ES + VGS+L+DMY+K GRI  A   
Sbjct: 1163 LDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRF 1222

Query: 217  FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
            FE +P R+V S  ++ISGYA+ G  E+A++LF ++ ++G   ++V  A +L  LS  + +
Sbjct: 1223 FELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHV--APLLGVLSACSHV 1280

Query: 277  GHGKQVHSHVLR----FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNA 331
            G  ++   H       + +   V   + ++D+  + G L       ++M  +  V+ W  
Sbjct: 1281 GFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRT 1340

Query: 332  MLVGYSKHG-----MGREVVELFNLMREENKVK 359
            +L    +       +GR   E+   +  +N V 
Sbjct: 1341 VLGACCRANGRNTELGRRAAEMLLELEPQNAVN 1373



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 158/308 (51%), Gaps = 51/308 (16%)

Query: 77  GQRVHAHMIKTCYRPPVYLRTRLIVFYNKC-ECLSDARKMFDEMRERNVVSWTAMISAYS 135
           G ++H  + KT Y   V +   LI  Y  C +  +DAR +FD +  RN +SW ++IS YS
Sbjct: 666 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYS 725

Query: 136 QKAHSFEALNLFIRMLRS----DTEPNEFTFATVLTSCAGA--FGFELGKQIHSLIIKSN 189
           ++     A +LF  M +       +PNE+TF +++T+   +  FG  + +Q+ + + KS 
Sbjct: 726 RRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSG 785

Query: 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFR 249
           F   +YVGS+L+  +A+ G   +A+ +FE +  R+VVS   ++ G  +    E A ++F 
Sbjct: 786 FLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFH 845

Query: 250 KLQ-VEGMISNYVTYASVLTALSGLAALGHGK----QVHSHVLRFEI-PSYVVLQNSLID 303
           +++ + G+ S+  +Y  +L+A S  + L  G+    +VH+HV+R  +  + V + N L++
Sbjct: 846 EMKDLVGINSD--SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVN 903

Query: 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363
           MY+K G++                                +   +F LM E+     DSV
Sbjct: 904 MYAKSGAIA-------------------------------DACSVFELMVEK-----DSV 927

Query: 364 TYLAVLSG 371
           ++ +++SG
Sbjct: 928 SWNSLISG 935



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 159/309 (51%), Gaps = 22/309 (7%)

Query: 78   QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQK 137
            +++ A + K+ +   +Y+ + L+  + +     DA+ +F++M  RNVVS   ++    ++
Sbjct: 775  EQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 834

Query: 138  AHSFEALNLFIRM-----LRSDTEPNEFTFATVLTSCAGAF-----GFELGKQIHSLIIK 187
                 A  +F  M     + SD+         VL S    F     G   G+++H+ +I+
Sbjct: 835  KQGEAAAKVFHEMKDLVGINSDS-------YVVLLSAFSEFSVLEEGRRKGREVHAHVIR 887

Query: 188  SNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIE 246
            +   ++ + +G+ L++MYAK+G I +A  VFE + E+D VS  ++ISG  Q    E+A E
Sbjct: 888  TGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAE 947

Query: 247  LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306
             F +++  G + +  T  S L++ + L  +  G+Q+H   L+  + + V + N+L+ +Y+
Sbjct: 948  SFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYA 1007

Query: 307  KCGSLTYSRRVFDNMSERTVISWNAML--VGYSKHGMGREVVELFNLMREENKVKPDSVT 364
            + G  T   +VF  M E   +SWN+++  +  S+  + + V     +MR    +    VT
Sbjct: 1008 ETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLS--RVT 1065

Query: 365  YLAVLSGCS 373
            ++ +LS  S
Sbjct: 1066 FINILSAVS 1074



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 15/220 (6%)

Query: 61   YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR 120
            + T+L+AC +  TL  G  VHA  I+ C    V + + L+  Y+KC  +  A + F+ M 
Sbjct: 1168 FATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMP 1227

Query: 121  ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT-FATVLTSCAGAF----GF 175
             RNV SW +MIS Y++  H  +AL LF RM+     P+       VL++C+       GF
Sbjct: 1228 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGF 1287

Query: 176  ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 235
            E  K +  +   S    H    S ++D+  +AG++ E       +P +  V     + G 
Sbjct: 1288 EHFKSMSEVYRLSPRVEHF---SCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 1344

Query: 236  A------QLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269
                      L   A E+  +L+ +  + NYV  A++  +
Sbjct: 1345 CCRANGRNTELGRRAAEMLLELEPQNAV-NYVLLANMYAS 1383


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 335/592 (56%), Gaps = 3/592 (0%)

Query: 39   NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
            N +  +  + M   G E+      ++L AC        G+ VH + +KT       L   
Sbjct: 492  NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANA 551

Query: 99   LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
            L+  Y+ C       ++F  M ++NVVSWTAMI++Y++     +   L   M+    +P+
Sbjct: 552  LLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPD 611

Query: 159  EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             F   +VL   AG    + GK +H   I++  E  + V ++L++MY     + EAR VF+
Sbjct: 612  VFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFD 671

Query: 219  CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
             +  +D++S   +I GY++     E+  LF  + ++    N VT   +L A++ +++L  
Sbjct: 672  HVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLER 730

Query: 279  GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
            G+++H++ LR          N+L+DMY KCG+L  +R +FD ++++ +ISW  M+ GY  
Sbjct: 731  GREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGM 790

Query: 339  HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
            HG G++ V LF  MR    V+PD+ ++ A+L  C H G+   G   F+ +   +   EP+
Sbjct: 791  HGCGKDAVALFEQMRGSG-VEPDTASFSAILYACCHSGLTAEGWKFFNAMRK-EYKIEPK 848

Query: 399  IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
            ++HY C+VD+L   G + EA EFI++MP EP ++I  SLL  CR+H +V + E V  R+ 
Sbjct: 849  LKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVF 908

Query: 459  EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
            ++EPEN G YV+L+N+YA A RWE V +++  +  + + ++ G SWIE+   +H F A +
Sbjct: 909  KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADN 968

Query: 519  RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
            R+HP    ++  +  ++ + +E G+ P     L   ++   ++ L GHS KLA+TFG++ 
Sbjct: 969  RNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLH 1028

Query: 579  TPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSC 630
             PEG PIRV KN ++C  CH  AKF+SK+  R++ LRD +RFHH   G CSC
Sbjct: 1029 LPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 4/366 (1%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M  LG+         LL         R G   H +++K  +     +   LI FY K  
Sbjct: 400 QMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSN 459

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
            + +A  +FD M  ++ +SW ++IS  +    + EA+ LF+RM     E +  T  +VL 
Sbjct: 460 MIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLP 519

Query: 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227
           +CA +  + +G+ +H   +K+       + ++LLDMY+     H    +F  + +++VVS
Sbjct: 520 ACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVS 579

Query: 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287
            TA+I+ Y + GL ++   L +++ ++G+  +     SVL   +G  +L  GK VH + +
Sbjct: 580 WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAI 639

Query: 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVE 347
           R  +   + + N+L++MY  C ++  +R VFD+++ + +ISWN ++ GYS++    E   
Sbjct: 640 RNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFS 699

Query: 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407
           LF+ M  +   KP++VT   +L   +     +RG  +    +  + GF  +      +VD
Sbjct: 700 LFSDMLLQ--FKPNTVTMTCILPAVASISSLERGREIHAYAL--RRGFLEDSYTSNALVD 755

Query: 408 MLGRAG 413
           M  + G
Sbjct: 756 MYVKCG 761



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 207/455 (45%), Gaps = 43/455 (9%)

Query: 19  QQLTVPSFPPNPQN-------------LKTLCSNGQLTKALIEMATLGLEMRFEEYDTLL 65
           Q +   +  P+P+N             ++ LC  G L  AL  + + G  +    Y  ++
Sbjct: 43  QVIEAAAAAPSPRNPPSRVLSSDVNLRIQRLCQAGDLAAALRLLGSDG-GVGVRSYCAVV 101

Query: 66  NACVNQRTLRGGQRVHAHMIKTCYRPPV--YLRTRLIVFYNKCECLSDARKMFDEMRER- 122
             C  +R+L   +R HA +++      +   L  RL++ Y KC  L  AR +FDEM  R 
Sbjct: 102 QLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRV 160

Query: 123 -NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181
            +V  WT+++SAY++     E ++LF +M      P+    + VL   A       G+ I
Sbjct: 161 ADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVI 220

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLD 241
           H L+ K        V ++L+ +Y++ G + +A  VF+ +  RD +S  + ISGY   G  
Sbjct: 221 HGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWH 280

Query: 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR----FEIPSYV-- 295
           + A++LF K+  EG   + VT  SVL A + L     GK VH + ++    +++ S    
Sbjct: 281 DRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSG 340

Query: 296 ---VLQNSLIDMYSKCGSLTYSRRVFDNM-SERTVISWNAMLVGYSKHGMGREVVELFNL 351
               L + L+ MY KCG +  +RRVFD M S+  V  WN ++ GY+K     E + LF  
Sbjct: 341 IDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQ 400

Query: 352 MREENKVKPDSVTYLAVLS-----GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406
           M E   + PD      +L       C+  G+   G  V       K GF  +      ++
Sbjct: 401 MHELG-ITPDEHALSCLLKCITCLSCARDGLVAHGYLV-------KLGFGTQCAVCNALI 452

Query: 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441
               ++  +  A+     MP + T +   S++  C
Sbjct: 453 SFYAKSNMIDNAVLVFDRMPHQDTIS-WNSVISGC 486



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 166/337 (49%), Gaps = 13/337 (3%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+         +L    +  ++  G+ +H  + K        +   LI  Y++C 
Sbjct: 188 QMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCG 247

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167
           C+ DA ++FD M  R+ +SW + IS Y        A++LF +M    TE +  T  +VL 
Sbjct: 248 CMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLP 307

Query: 168 SCAGAFGFEL-GKQIHSLIIKSNF-------ESHI--YVGSSLLDMYAKAGRIHEARGVF 217
           +CA   GFEL GK +H   +KS         +S I   +GS L+ MY K G +  AR VF
Sbjct: 308 ACA-ELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVF 366

Query: 218 ECLPER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           + +P + +V     I+ GYA+    EE++ LF ++   G+  +    + +L  ++ L+  
Sbjct: 367 DAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCA 426

Query: 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336
             G   H ++++    +   + N+LI  Y+K   +  +  VFD M  +  ISWN+++ G 
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           + +G+  E +ELF  M  +   + DS T L+VL  C+
Sbjct: 487 TSNGLNSEAIELFVRMWMQGH-ELDSTTLLSVLPACA 522


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/625 (35%), Positives = 346/625 (55%), Gaps = 73/625 (11%)

Query: 79  RVHAHMIKTCYRPPVYLRTRLIVFYNKC----ECLSDARKMFDEMRERNVVSWT------ 128
           + HA  +K+       +   L+  Y+KC      L  ARK+FDE+ E++  SWT      
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229

Query: 129 --------------------------AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTF 162
                                     AMIS Y  +    EAL +  RM+ S  E +EFT+
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289

Query: 163 ATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221
            +V+ +CA A   +LGKQ+H+ +++  +F  H    +SL+ +Y K G+  EAR +FE +P
Sbjct: 290 PSVIRACATAGLLQLGKQVHAYVLRREDFSFHF--DNSLVSLYYKCGKFDEARAIFEKMP 347

Query: 222 ERDVVSCTAIISGY-------------------------------AQLGLDEEAIELFRK 250
            +D+VS  A++SGY                               A+ G  EE ++LF  
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 251 LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310
           ++ EG       ++  + + + L A  +G+Q H+ +L+    S +   N+LI MY+KCG 
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGV 467

Query: 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370
           +  +R+VF  M     +SWNA++    +HG G E V+++  M ++  ++PD +T L VL+
Sbjct: 468 VEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKG-IRPDRITLLTVLT 526

Query: 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPT 430
            CSH G+ D+G   F + ++      P  +HY  ++D+L R+G+  +A   I+++PF+PT
Sbjct: 527 ACSHAGLVDQGRKYF-DSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 585

Query: 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490
           A I  +LL  CRVH N+++G     +L  + PE+ G Y++LSN++A+ G+WE+V RVR+L
Sbjct: 586 AEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKL 645

Query: 491 MKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCV 550
           M+++ V K+   SWIE++  +HTF   D SHP  E +   ++ L  + +  GYVPD S V
Sbjct: 646 MRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFV 705

Query: 551 LYDVDEE-QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYG 609
           L+DV+ +  KE +L  HSEK+A+ FGL+  P G  IR+ KNLR C DCHNF +F+S V  
Sbjct: 706 LHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQ 765

Query: 610 RKVSLRDKNRFHHIVEGTCSCGDYW 634
           R + LRD+ RFHH   G CSCG++W
Sbjct: 766 RDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 191/409 (46%), Gaps = 80/409 (19%)

Query: 61  YDTLLNACVNQR--TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118
           Y   L  C+  R  +L+  + VH ++I   ++P  ++  RLI  Y K   L+ AR++FDE
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDE 74

Query: 119 MRE---------------------------------RNVVSWTAMISAYSQKAHSFEALN 145
           + E                                 R+ V + AMI+ +S     + A+N
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQIHSLIIKSNFESHIYVGSSLLDMY 204
           LF +M     +P+ FTFA+VL   A     E    Q H+  +KS       V ++L+ +Y
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194

Query: 205 AKAGR----IHEARGVFECLPERD--------------------------------VVSC 228
           +K       +H AR VF+ + E+D                                +V+ 
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254

Query: 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288
            A+ISGY   G  +EA+E+ R++   G+  +  TY SV+ A +    L  GKQVH++VLR
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314

Query: 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVEL 348
            E  S+    NSL+ +Y KCG    +R +F+ M  + ++SWNA+L GY   G   E   +
Sbjct: 315 REDFSF-HFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 349 FNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP 397
           F  M+E+N      ++++ ++SG +  G  + GL +F  +   ++GFEP
Sbjct: 374 FKEMKEKN-----ILSWMIMISGLAENGFGEEGLKLFSCMK--REGFEP 415



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 6/183 (3%)

Query: 58  FEEYDTLLNACVNQRTLRG----GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDAR 113
           FE  D   +  +    + G    GQ+ HA ++K  +   +     LI  Y KC  + +AR
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472

Query: 114 KMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173
           ++F  M   + VSW A+I+A  Q  H  EA++++  ML+    P+  T  TVLT+C+ A 
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532

Query: 174 GFELGKQ-IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC-TAI 231
             + G++   S+             + L+D+  ++G+  +A  V E LP +       A+
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 232 ISG 234
           +SG
Sbjct: 593 LSG 595


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 333/559 (59%), Gaps = 9/559 (1%)

Query: 79  RVHAHMIKTCYRP-PVYLRTRLIVFYNKCEC-LSDARKMFDEMRERNVVSWTAMISAYSQ 136
           ++HA ++KT +   P+ LR  L+         LS AR +FD +   +  ++  +I A++ 
Sbjct: 6   KLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHAD 65

Query: 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196
            + SF       +M  +   P+ FTF  VL +CA     + G  +HSL+ K  F+S +YV
Sbjct: 66  SSPSFSLSLF-SKMTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYV 121

Query: 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256
            + L+  Y   G +  A   FE +PERD+VS +++I+ +A+ G   EA+ LF+++Q+ G 
Sbjct: 122 QNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 257 IS-NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315
           +  + V   SV++A+S L  L  GK +   + R  +   V L  +L+DM+S+CG +  S 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 316 RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375
           RVFD M ER V++W A++ G + HG   E + +F  MR     +PD VT+  VL  CSHG
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHG-FQPDHVTFTGVLVACSHG 300

Query: 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG 435
           G+   G  VF  I + + G EP  EHYGC+VD+LGRAG + EA +F+  MP  P + I  
Sbjct: 301 GLVSEGWHVFESIRN-EYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWR 359

Query: 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495
           +LLGAC  H  +++ E V +++ E++  + G+YV+LSN+Y   GRW +   VR  M+EK 
Sbjct: 360 TLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKR 419

Query: 496 VTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVD 555
           ++K PG S I ++ ++H F A D +HP  E +   +  +    K  GY PD+S VL+D++
Sbjct: 420 ISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIE 479

Query: 556 EEQKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLR 615
           EE+KE  L  HSEKLA+ F L+   +   IRV+KNLRIC DCH F K+ S V+ R++ +R
Sbjct: 480 EEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 616 DKNRFHHIVEGTCSCGDYW 634
           D+NRFHH  +G+CSC DYW
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 155/299 (51%), Gaps = 14/299 (4%)

Query: 48  EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE 107
           +M   G+      +  +L AC   +T   G  +H+ + K  +   VY++  LI FY  C 
Sbjct: 77  KMTMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 108 CLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRM-LRSDTEPNEFTFATVL 166
            L  A K F+EM ER++VSW++MI+ +++    +EAL LF RM L    +P+E    +V+
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV 226
           ++ +     ELGK I   I ++  E  + +G++L+DM+++ G I E+  VF+ + ER+V+
Sbjct: 194 SAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVL 253

Query: 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286
           + TA+I+G A  G   EA+ +F +++  G   ++VT+  VL A S    +  G  V   +
Sbjct: 254 TWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 287 LRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-TVISWNAMLVGYSKH 339
            R E     +P +      ++D+  + G L  + +  D M  R   I W  +L     H
Sbjct: 314 -RNEYGMEPLPEH---YGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNH 368


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 281/437 (64%), Gaps = 2/437 (0%)

Query: 198 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257
           ++++  YAK G I EAR +F+ L ERD +    +I GYAQ GL  E + LFR++    + 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317
            N VT  +VL+A     AL  G+ VHS++    I   V +  SLIDMYSKCGSL  +R V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377
           F+ +S + V++WN+M+VGY+ HG  ++ + LF  M      +P  +T++ VL+ CSH G+
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIG-YQPTDITFIGVLNACSHAGL 188

Query: 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437
              G   F+ + D + G EP++EHYGC+V++LGRAG + EA E +KNM  +    + G+L
Sbjct: 189 VSEGWKFFYSMKD-EYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTL 247

Query: 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497
           LGACR+H N+ +GE + + L+     N+G YV+LSN+YA+AG WE V RVR LMKE    
Sbjct: 248 LGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFE 307

Query: 498 KDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEE 557
           K+PG S IE++  +H F A D  HP   E+   +++++   K  GY P    VL+D+++ 
Sbjct: 308 KEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDA 367

Query: 558 QKEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDK 617
           QKE+ L  HSEKLAL FGLI T  G  I+++KNLR+C DCH   K +SK+ GRKV +RD+
Sbjct: 368 QKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDR 427

Query: 618 NRFHHIVEGTCSCGDYW 634
           NRFHH V G CSCGDYW
Sbjct: 428 NRFHHFVNGLCSCGDYW 444



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 132/256 (51%), Gaps = 5/256 (1%)

Query: 97  TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156
           T +I  Y K   + +AR +FD + ER+ + W  MI  Y+Q     E L LF +ML +   
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216
           PNE T   VL++C      E G+ +HS I  +    ++ VG+SL+DMY+K G + +AR V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276
           FE +  +DVV+  +++ GYA  G  ++A+ LF+++ + G     +T+  VL A S    +
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 277 GHG-KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ERTVISWNAMLV 334
             G K  +S    + I   V     ++++  + G L  +  +  NM  ++  + W  +L 
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249

Query: 335 GYSKHG---MGREVVE 347
               HG   +G ++ E
Sbjct: 250 ACRLHGNIALGEQIAE 265



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 1/152 (0%)

Query: 63  TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122
            +L+AC     L  G+ VH+++        V + T LI  Y+KC  L DAR +F+ +  +
Sbjct: 77  AVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNK 136

Query: 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG-KQI 181
           +VV+W +M+  Y+    S +AL LF  M     +P + TF  VL +C+ A     G K  
Sbjct: 137 DVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFF 196

Query: 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEA 213
           +S+  +   E  +     ++++  +AG + EA
Sbjct: 197 YSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEA 228


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 329/597 (55%), Gaps = 40/597 (6%)

Query: 39  NGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98
           +G+  K L+ M   G +     +   L AC     LR G+++H  ++        ++R  
Sbjct: 136 SGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNA 195

Query: 99  LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158
           +   Y KC  +  AR +FD M ++NVVSW  MIS Y +  +  E ++LF  M  S  +P+
Sbjct: 196 MTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPD 255

Query: 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218
             T + VL +                                   Y + GR+ +AR +F 
Sbjct: 256 LVTVSNVLNA-----------------------------------YFRCGRVDDARNLFI 280

Query: 219 CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH 278
            LP++D +  T +I GYAQ G +E+A  LF  +    +  +  T +S++++ + LA+L H
Sbjct: 281 KLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYH 340

Query: 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338
           G+ VH  V+   I + +++ ++L+DMY KCG    +R +F+ M  R VI+WNAM++GY++
Sbjct: 341 GQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQ 400

Query: 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398
           +G   E + L+  M++EN  KPD++T++ VLS C +  M   G   F  I   + G  P 
Sbjct: 401 NGQVLEALTLYERMQQEN-FKPDNITFVGVLSACINADMVKEGQKYFDSI--SEHGIAPT 457

Query: 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM 458
           ++HY C++ +LGR+G V +A++ I+ MP EP   I  +LL  C    ++   E     L 
Sbjct: 458 LDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLF 516

Query: 459 EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASD 518
           E++P NAG Y++LSNLYA+ GRW+DV  VR LMKEK   K    SW+E+   +H F + D
Sbjct: 517 ELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSED 576

Query: 519 RSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIG 578
             HP   ++  ++ +L    ++ GY PD + VL++V EE+K + +  HSEKLAL F LI 
Sbjct: 577 HYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIR 636

Query: 579 TPEG-APIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634
            P G APIR+IKN+R+C DCH F KF S    R + +RD NRFHH   G CSC D W
Sbjct: 637 KPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 195/431 (45%), Gaps = 71/431 (16%)

Query: 41  QLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPP-VYLRTRL 99
           +L +A+  + + GL   F++Y  L+  C         +R+ +HM    ++P   ++  +L
Sbjct: 6   KLHQAIDLLYSHGLA-SFDDYTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQL 64

Query: 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ----------------------- 136
           +  Y K   LSDA+ +FD M +R+V SW  ++SAY++                       
Sbjct: 65  LHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYN 124

Query: 137 --------KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188
                     HS +AL + +RM     +P +++    L +C+       GKQIH  I+ +
Sbjct: 125 TLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVA 184

Query: 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELF 248
           +   + +V +++ DMYAK G I +AR +F+ + +++VVS   +ISGY ++G   E I LF
Sbjct: 185 DLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLF 244

Query: 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308
            ++Q+ G+  + VT ++VL A                                   Y +C
Sbjct: 245 NEMQLSGLKPDLVTVSNVLNA-----------------------------------YFRC 269

Query: 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368
           G +  +R +F  + ++  I W  M+VGY+++G   +   LF  M   N VKPDS T  ++
Sbjct: 270 GRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRN-VKPDSYTISSM 328

Query: 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428
           +S C+       G  V  ++V    G +  +     +VDM  + G   +A    + MP  
Sbjct: 329 VSSCAKLASLYHGQVVHGKVVVM--GIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIR 386

Query: 429 PTAAILGSLLG 439
                   +LG
Sbjct: 387 NVITWNAMILG 397



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 131/253 (51%), Gaps = 14/253 (5%)

Query: 194 IYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253
           +Y  ++LL  YAK G +     VF+ +P RD VS   +I+ +A  G   +A+++  ++Q 
Sbjct: 89  VYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQE 148

Query: 254 EGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313
           +G      ++ + L A S L  L HGKQ+H  ++  ++     ++N++ DMY+KCG +  
Sbjct: 149 DGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDK 208

Query: 314 SRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373
           +R +FD M ++ V+SWN M+ GY K G   E + LFN M + + +KPD VT   VL+   
Sbjct: 209 ARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEM-QLSGLKPDLVTVSNVLNAYF 267

Query: 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--GRVGEALEFIKNM---PFE 428
             G  D    +F ++        P+ +       ++G A  GR  +A     +M     +
Sbjct: 268 RCGRVDDARNLFIKL--------PKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVK 319

Query: 429 PTAAILGSLLGAC 441
           P +  + S++ +C
Sbjct: 320 PDSYTISSMVSSC 332


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,666,211,089
Number of Sequences: 23463169
Number of extensions: 397338066
Number of successful extensions: 1180963
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8108
Number of HSP's successfully gapped in prelim test: 3157
Number of HSP's that attempted gapping in prelim test: 1022750
Number of HSP's gapped (non-prelim): 51230
length of query: 634
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 485
effective length of database: 8,863,183,186
effective search space: 4298643845210
effective search space used: 4298643845210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)