Query 006705
Match_columns 634
No_of_seqs 801 out of 4463
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4E-122 8E-127 1014.0 70.1 607 26-634 87-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 5E-120 1E-124 1020.8 68.6 622 2-632 233-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-76 6.9E-81 664.8 46.8 590 22-627 47-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-66 3.1E-71 575.0 51.8 491 2-501 381-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.3E-63 9.3E-68 547.4 52.2 507 21-548 365-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.7E-59 8.1E-64 514.1 41.4 485 122-627 85-581 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-27 6.1E-32 272.5 52.0 479 3-495 375-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-26 2.2E-31 267.8 51.3 478 3-494 341-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.6E-29 3.5E-34 205.5 8.0 106 501-624 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 3.7E-19 8E-24 206.4 48.9 474 4-493 41-665 (1157)
11 PRK11447 cellulose synthase su 99.9 9.1E-19 2E-23 203.2 48.0 417 65-497 276-744 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 7.1E-19 1.5E-23 173.5 32.9 379 92-483 115-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 7.1E-19 1.5E-23 173.5 29.6 419 61-494 51-485 (966)
14 PRK11788 tetratricopeptide rep 99.9 5.4E-19 1.2E-23 182.8 29.2 290 170-501 46-354 (389)
15 PRK11788 tetratricopeptide rep 99.8 8.1E-19 1.7E-23 181.5 30.2 291 68-363 45-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-17 6.2E-22 179.1 43.2 419 61-494 130-571 (615)
17 PRK09782 bacteriophage N4 rece 99.8 6E-16 1.3E-20 172.0 49.1 476 5-494 122-706 (987)
18 PRK09782 bacteriophage N4 rece 99.8 5.3E-16 1.2E-20 172.4 46.4 471 4-494 57-672 (987)
19 PRK15174 Vi polysaccharide exp 99.8 1.5E-16 3.3E-21 172.9 40.2 352 105-465 17-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 3.4E-16 7.4E-21 173.8 40.4 400 59-494 16-456 (765)
21 PRK10049 pgaA outer membrane p 99.8 3E-15 6.4E-20 166.4 47.0 405 29-465 18-461 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.4E-20 165.0 38.1 323 59-391 43-381 (656)
23 PRK14574 hmsH outer membrane p 99.8 4.6E-14 1E-18 153.9 44.3 428 61-494 38-513 (822)
24 TIGR00990 3a0801s09 mitochondr 99.7 2.4E-14 5.1E-19 156.3 38.4 217 273-494 307-537 (615)
25 PRK14574 hmsH outer membrane p 99.7 3.2E-13 7E-18 147.4 44.6 423 36-466 44-519 (822)
26 KOG2002 TPR-containing nuclear 99.7 2.4E-13 5.3E-18 141.9 36.5 412 75-494 253-745 (1018)
27 KOG2002 TPR-containing nuclear 99.7 1.9E-12 4.2E-17 135.3 38.0 426 68-507 209-686 (1018)
28 KOG2003 TPR repeat-containing 99.7 2.3E-13 4.9E-18 130.2 28.4 411 62-480 205-709 (840)
29 KOG4422 Uncharacterized conser 99.6 2.5E-11 5.4E-16 115.8 38.4 291 59-355 117-462 (625)
30 KOG2076 RNA polymerase III tra 99.5 3.2E-11 7E-16 125.6 32.8 331 138-504 153-522 (895)
31 PF13429 TPR_15: Tetratricopep 99.5 2E-14 4.4E-19 140.9 9.1 255 232-492 15-275 (280)
32 KOG4422 Uncharacterized conser 99.5 7.1E-11 1.5E-15 112.8 31.5 247 56-306 205-479 (625)
33 KOG4318 Bicoid mRNA stability 99.5 4E-11 8.7E-16 124.2 32.2 427 44-505 11-604 (1088)
34 KOG0495 HAT repeat protein [RN 99.5 1.9E-09 4.1E-14 108.5 42.4 414 48-508 469-892 (913)
35 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.7E-14 107.5 42.9 419 44-480 367-802 (913)
36 PRK10747 putative protoheme IX 99.5 2.3E-11 5E-16 124.9 29.8 284 137-459 97-389 (398)
37 KOG2076 RNA polymerase III tra 99.4 4.7E-09 1E-13 109.8 40.2 354 66-424 147-551 (895)
38 TIGR00540 hemY_coli hemY prote 99.4 1.4E-10 3.1E-15 119.7 29.0 288 136-459 96-398 (409)
39 PRK10747 putative protoheme IX 99.4 1.4E-10 3.1E-15 119.1 28.7 275 207-493 97-389 (398)
40 PF13429 TPR_15: Tetratricopep 99.4 1E-12 2.2E-17 128.8 12.4 254 131-389 15-275 (280)
41 TIGR00540 hemY_coli hemY prote 99.4 7.9E-10 1.7E-14 114.2 32.8 217 270-492 163-397 (409)
42 KOG1915 Cell cycle control pro 99.4 1.1E-08 2.4E-13 99.3 36.9 390 104-504 84-510 (677)
43 KOG1173 Anaphase-promoting com 99.4 4E-09 8.6E-14 104.8 33.4 257 228-492 247-516 (611)
44 KOG1126 DNA-binding cell divis 99.3 1.9E-10 4.1E-15 116.4 22.7 275 175-493 335-619 (638)
45 KOG1155 Anaphase-promoting com 99.3 8E-09 1.7E-13 100.2 32.5 247 168-424 236-491 (559)
46 KOG0547 Translocase of outer m 99.3 4.2E-09 9.1E-14 102.7 30.6 213 272-492 338-564 (606)
47 KOG1915 Cell cycle control pro 99.3 6.8E-08 1.5E-12 94.0 38.3 374 58-439 107-548 (677)
48 KOG1126 DNA-binding cell divis 99.3 1.7E-10 3.8E-15 116.7 21.7 243 241-494 335-586 (638)
49 COG2956 Predicted N-acetylgluc 99.3 1.8E-09 3.9E-14 99.9 26.3 270 137-443 48-327 (389)
50 KOG2003 TPR repeat-containing 99.3 5.1E-09 1.1E-13 100.8 29.9 394 93-494 201-689 (840)
51 KOG1155 Anaphase-promoting com 99.3 3.1E-08 6.8E-13 96.2 35.2 288 132-425 235-533 (559)
52 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 86.9 6.2 50 122-171 1-50 (50)
53 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.3E-16 85.4 6.7 50 324-374 1-50 (50)
54 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 104.4 22.1 198 293-493 29-231 (234)
55 COG3071 HemY Uncharacterized e 99.3 1.1E-08 2.3E-13 97.9 28.2 285 137-458 97-388 (400)
56 KOG4318 Bicoid mRNA stability 99.2 4.2E-10 9E-15 116.8 18.2 264 246-551 11-275 (1088)
57 COG2956 Predicted N-acetylgluc 99.2 1.2E-08 2.7E-13 94.5 25.6 294 173-501 49-354 (389)
58 KOG1174 Anaphase-promoting com 99.2 2.4E-07 5.2E-12 88.8 34.6 361 96-464 100-504 (564)
59 COG3071 HemY Uncharacterized e 99.2 6.5E-08 1.4E-12 92.6 30.5 273 207-493 97-389 (400)
60 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.4E-13 104.8 25.0 232 261-492 200-477 (508)
61 PRK12370 invasion protein regu 99.1 2.2E-08 4.9E-13 107.5 25.4 260 224-495 255-536 (553)
62 TIGR02521 type_IV_pilW type IV 99.1 3.4E-08 7.4E-13 93.8 23.3 193 225-424 31-228 (234)
63 KOG2376 Signal recognition par 99.1 3.6E-06 7.9E-11 84.7 37.1 434 33-491 19-517 (652)
64 PRK12370 invasion protein regu 99.0 8.2E-08 1.8E-12 103.2 25.8 145 175-322 320-468 (553)
65 KOG4162 Predicted calmodulin-b 99.0 1.2E-06 2.7E-11 90.7 32.4 398 88-494 318-783 (799)
66 KOG1173 Anaphase-promoting com 99.0 1.8E-07 3.9E-12 93.4 25.5 278 131-441 251-532 (611)
67 KOG1840 Kinesin light chain [C 99.0 6.5E-08 1.4E-12 99.2 22.9 162 160-321 200-393 (508)
68 KOG0547 Translocase of outer m 99.0 4.8E-06 1.1E-10 81.9 33.9 218 235-461 336-567 (606)
69 KOG3785 Uncharacterized conser 99.0 2.5E-06 5.4E-11 80.3 30.4 410 69-505 33-498 (557)
70 KOG1129 TPR repeat-containing 99.0 1.8E-08 3.9E-13 93.4 15.6 194 297-495 258-459 (478)
71 PRK11189 lipoprotein NlpI; Pro 99.0 1E-07 2.2E-12 93.7 21.6 211 274-495 40-266 (296)
72 KOG2047 mRNA splicing factor [ 98.9 3.6E-05 7.9E-10 78.3 38.2 424 62-492 106-613 (835)
73 KOG2047 mRNA splicing factor [ 98.9 7.1E-05 1.5E-09 76.3 37.9 393 93-497 102-581 (835)
74 KOG1156 N-terminal acetyltrans 98.9 4.1E-05 8.8E-10 78.2 36.1 423 62-496 12-470 (700)
75 KOG4162 Predicted calmodulin-b 98.9 3.8E-05 8.2E-10 80.0 35.8 408 46-465 311-788 (799)
76 KOG1129 TPR repeat-containing 98.8 1.6E-07 3.5E-12 87.2 16.5 228 229-463 227-461 (478)
77 PF12569 NARP1: NMDA receptor- 98.8 1.8E-05 3.8E-10 82.6 32.1 302 66-379 12-356 (517)
78 PRK11189 lipoprotein NlpI; Pro 98.8 2E-06 4.3E-11 84.6 23.8 115 139-254 41-161 (296)
79 COG3063 PilF Tfp pilus assembl 98.8 5.1E-07 1.1E-11 80.3 17.2 164 328-496 37-204 (250)
80 PF12569 NARP1: NMDA receptor- 98.8 6.6E-06 1.4E-10 85.7 27.0 68 134-204 14-82 (517)
81 PF04733 Coatomer_E: Coatomer 98.7 2E-06 4.4E-11 83.4 20.3 155 301-464 108-269 (290)
82 KOG3616 Selective LIM binding 98.7 1.3E-05 2.7E-10 82.4 26.0 193 267-490 739-933 (1636)
83 PRK04841 transcriptional regul 98.7 0.00018 4E-09 83.2 39.2 328 134-463 384-763 (903)
84 KOG1156 N-terminal acetyltrans 98.7 0.00046 9.9E-09 70.8 36.2 410 70-492 53-509 (700)
85 COG3063 PilF Tfp pilus assembl 98.7 8.4E-06 1.8E-10 72.7 20.9 199 228-463 38-239 (250)
86 KOG3616 Selective LIM binding 98.7 3.6E-05 7.8E-10 79.2 28.0 225 98-351 620-849 (1636)
87 KOG1174 Anaphase-promoting com 98.7 3.5E-05 7.6E-10 74.4 26.3 262 89-354 228-499 (564)
88 KOG4340 Uncharacterized conser 98.6 1.7E-05 3.8E-10 73.1 22.4 417 53-494 5-443 (459)
89 cd05804 StaR_like StaR_like; a 98.6 6E-05 1.3E-09 76.8 29.3 196 299-495 118-337 (355)
90 KOG1125 TPR repeat-containing 98.6 1.5E-06 3.3E-11 87.3 15.8 218 271-493 296-526 (579)
91 KOG3785 Uncharacterized conser 98.6 4.3E-05 9.4E-10 72.2 24.3 375 100-491 29-454 (557)
92 cd05804 StaR_like StaR_like; a 98.6 0.00016 3.4E-09 73.8 31.5 151 170-322 54-213 (355)
93 PF12854 PPR_1: PPR repeat 98.6 8.8E-08 1.9E-12 59.1 4.6 33 394-426 2-34 (34)
94 PF04733 Coatomer_E: Coatomer 98.6 2.3E-06 5E-11 83.0 16.3 215 263-493 38-264 (290)
95 PF12854 PPR_1: PPR repeat 98.6 9.5E-08 2.1E-12 58.9 4.1 33 189-221 2-34 (34)
96 KOG0985 Vesicle coat protein c 98.6 0.00095 2.1E-08 71.7 35.7 343 56-443 950-1325(1666)
97 KOG3617 WD40 and TPR repeat-co 98.5 0.00036 7.8E-09 73.1 31.1 378 57-489 725-1169(1416)
98 KOG0548 Molecular co-chaperone 98.5 7.4E-05 1.6E-09 74.8 24.7 215 264-494 228-455 (539)
99 KOG0985 Vesicle coat protein c 98.5 0.00092 2E-08 71.8 33.4 318 57-413 983-1327(1666)
100 KOG1127 TPR repeat-containing 98.5 0.00013 2.9E-09 78.0 27.0 172 313-491 801-993 (1238)
101 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.4E-10 75.8 18.7 181 295-494 33-232 (235)
102 KOG0624 dsRNA-activated protei 98.4 0.00085 1.8E-08 63.5 28.6 304 131-465 45-375 (504)
103 KOG1070 rRNA processing protei 98.4 1.7E-05 3.8E-10 87.2 20.1 200 292-497 1455-1666(1710)
104 KOG4340 Uncharacterized conser 98.4 4.7E-05 1E-09 70.3 19.3 289 161-491 12-336 (459)
105 PRK04841 transcriptional regul 98.4 0.00044 9.5E-09 80.1 32.8 323 102-425 383-757 (903)
106 PRK10370 formate-dependent nit 98.4 1.6E-05 3.5E-10 72.8 16.5 147 333-495 23-174 (198)
107 KOG2376 Signal recognition par 98.4 0.0016 3.4E-08 66.3 31.1 341 133-491 21-402 (652)
108 KOG0548 Molecular co-chaperone 98.4 0.00087 1.9E-08 67.4 28.4 394 67-476 11-471 (539)
109 KOG1127 TPR repeat-containing 98.4 0.00031 6.7E-09 75.3 26.4 377 93-490 492-909 (1238)
110 PLN02789 farnesyltranstransfer 98.3 0.00024 5.3E-09 69.9 22.9 177 311-492 88-300 (320)
111 KOG1070 rRNA processing protei 98.3 0.00018 3.9E-09 79.6 23.3 223 156-380 1454-1689(1710)
112 KOG0624 dsRNA-activated protei 98.3 0.00085 1.8E-08 63.5 24.6 287 200-494 44-370 (504)
113 PRK15363 pathogenicity island 98.2 2.3E-05 5E-10 66.7 12.3 119 398-539 34-154 (157)
114 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4.2E-11 54.0 4.4 35 125-159 1-35 (35)
115 PRK15359 type III secretion sy 98.2 3.6E-05 7.8E-10 66.6 13.6 108 365-475 27-136 (144)
116 PRK15359 type III secretion sy 98.2 2.7E-05 5.8E-10 67.4 12.7 106 383-494 14-121 (144)
117 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.3E-11 53.5 4.2 35 226-260 1-35 (35)
118 PRK10370 formate-dependent nit 98.2 0.0002 4.4E-09 65.5 17.7 154 302-468 23-181 (198)
119 COG5010 TadD Flp pilus assembl 98.1 0.00014 3E-09 66.6 16.0 134 358-494 62-197 (257)
120 KOG1125 TPR repeat-containing 98.1 0.00015 3.4E-09 73.2 17.6 216 169-390 295-526 (579)
121 KOG3617 WD40 and TPR repeat-co 98.1 0.00049 1.1E-08 72.2 21.2 127 335-488 921-1058(1416)
122 KOG1128 Uncharacterized conser 98.1 9.7E-05 2.1E-09 76.6 15.8 189 290-495 393-583 (777)
123 TIGR03302 OM_YfiO outer membra 98.1 0.00016 3.4E-09 68.9 16.7 181 259-462 32-234 (235)
124 PF13812 PPR_3: Pentatricopept 98.1 5.7E-06 1.2E-10 51.4 4.4 34 124-157 1-34 (34)
125 PRK15179 Vi polysaccharide bio 98.1 0.00028 6E-09 76.7 19.7 160 325-496 85-247 (694)
126 COG5010 TadD Flp pilus assembl 98.1 0.00044 9.6E-09 63.3 17.7 152 332-488 72-225 (257)
127 KOG2053 Mitochondrial inherita 98.1 0.029 6.2E-07 60.3 38.5 68 433-500 438-508 (932)
128 KOG1128 Uncharacterized conser 98.0 0.00016 3.4E-09 75.1 15.4 228 130-410 404-634 (777)
129 PF13812 PPR_3: Pentatricopept 98.0 8.9E-06 1.9E-10 50.5 4.2 34 225-258 1-34 (34)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00024 5.3E-09 71.4 15.9 127 298-429 172-298 (395)
131 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 66.3 19.7 144 328-495 308-455 (484)
132 PLN02789 farnesyltranstransfer 98.0 0.0042 9.1E-08 61.3 24.1 207 229-443 41-267 (320)
133 KOG3081 Vesicle coat complex C 98.0 0.0063 1.4E-07 56.0 22.9 153 302-463 115-274 (299)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00013 2.8E-09 73.3 13.4 122 365-492 172-295 (395)
135 COG4783 Putative Zn-dependent 97.9 0.0036 7.9E-08 62.5 22.7 177 310-493 252-436 (484)
136 TIGR02552 LcrH_SycD type III s 97.9 0.00012 2.6E-09 62.8 11.3 97 398-494 16-114 (135)
137 PRK14720 transcript cleavage f 97.9 0.0046 9.9E-08 68.3 25.6 82 261-355 117-198 (906)
138 PRK14720 transcript cleavage f 97.9 0.002 4.3E-08 71.0 22.7 239 52-337 24-268 (906)
139 KOG3081 Vesicle coat complex C 97.9 0.0031 6.7E-08 57.9 19.9 168 247-425 95-268 (299)
140 PRK15179 Vi polysaccharide bio 97.9 0.0014 3E-08 71.5 20.8 143 290-438 81-229 (694)
141 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.9E-10 47.4 3.6 31 125-155 1-31 (31)
142 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 6E-10 47.0 3.5 31 226-256 1-31 (31)
143 TIGR02552 LcrH_SycD type III s 97.7 0.00084 1.8E-08 57.4 13.0 100 363-465 18-119 (135)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0016 3.4E-08 56.5 13.4 125 328-490 14-143 (145)
145 cd00189 TPR Tetratricopeptide 97.6 0.00054 1.2E-08 53.9 9.7 92 402-493 3-96 (100)
146 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00088 1.9E-08 55.7 11.1 30 435-464 80-109 (119)
147 KOG3060 Uncharacterized conser 97.5 0.0086 1.9E-07 54.7 16.3 153 335-493 61-219 (289)
148 KOG1914 mRNA cleavage and poly 97.5 0.16 3.4E-06 51.8 36.1 74 57-132 19-94 (656)
149 PF09976 TPR_21: Tetratricopep 97.5 0.0063 1.4E-07 52.7 15.0 124 295-424 12-143 (145)
150 KOG1538 Uncharacterized conser 97.5 0.016 3.5E-07 59.6 19.4 203 162-431 601-806 (1081)
151 PF12895 Apc3: Anaphase-promot 97.4 0.00013 2.9E-09 56.4 3.5 53 437-490 31-83 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0021 4.6E-08 53.4 10.3 96 400-495 3-106 (119)
153 PF05843 Suf: Suppressor of fo 97.3 0.0048 1E-07 60.0 13.8 143 327-475 2-150 (280)
154 KOG3060 Uncharacterized conser 97.3 0.016 3.4E-07 53.1 15.6 152 339-493 25-182 (289)
155 cd00189 TPR Tetratricopeptide 97.3 0.0032 6.9E-08 49.3 10.4 91 329-424 3-93 (100)
156 KOG0550 Molecular chaperone (D 97.3 0.0085 1.8E-07 58.5 14.1 267 200-496 55-352 (486)
157 PF13414 TPR_11: TPR repeat; P 97.2 0.00061 1.3E-08 50.3 5.2 64 430-493 2-66 (69)
158 PF04840 Vps16_C: Vps16, C-ter 97.2 0.24 5.2E-06 48.9 24.3 113 362-492 177-289 (319)
159 KOG1914 mRNA cleavage and poly 97.2 0.33 7.2E-06 49.6 36.1 161 326-491 366-536 (656)
160 PRK10153 DNA-binding transcrip 97.2 0.016 3.4E-07 61.3 16.9 61 432-493 421-481 (517)
161 PLN03088 SGT1, suppressor of 97.2 0.0021 4.5E-08 64.9 9.9 104 369-475 9-114 (356)
162 PRK02603 photosystem I assembl 97.2 0.0044 9.5E-08 55.5 10.9 95 399-493 35-148 (172)
163 PRK02603 photosystem I assembl 97.1 0.011 2.4E-07 53.0 13.2 131 325-480 34-166 (172)
164 CHL00033 ycf3 photosystem I as 97.1 0.0043 9.4E-08 55.4 10.5 94 398-491 34-139 (168)
165 PF08579 RPM2: Mitochondrial r 97.1 0.0085 1.8E-07 47.5 10.5 81 328-411 27-116 (120)
166 PF13432 TPR_16: Tetratricopep 97.1 0.0012 2.5E-08 48.1 5.4 58 437-494 3-60 (65)
167 PRK10866 outer membrane biogen 97.1 0.15 3.2E-06 48.4 20.9 59 367-425 180-238 (243)
168 PF10037 MRP-S27: Mitochondria 97.1 0.0064 1.4E-07 61.6 12.2 118 90-207 63-186 (429)
169 PF14938 SNAP: Soluble NSF att 97.1 0.34 7.4E-06 47.3 26.2 97 329-426 158-264 (282)
170 KOG2280 Vacuolar assembly/sort 97.1 0.58 1.3E-05 49.8 28.6 341 49-424 423-795 (829)
171 PF14938 SNAP: Soluble NSF att 97.1 0.029 6.3E-07 54.8 16.2 99 228-326 158-268 (282)
172 PLN03088 SGT1, suppressor of 97.0 0.0096 2.1E-07 60.1 12.8 105 332-441 8-113 (356)
173 PF12895 Apc3: Anaphase-promot 97.0 0.0027 5.8E-08 49.0 6.9 80 339-424 2-83 (84)
174 PF08579 RPM2: Mitochondrial r 97.0 0.01 2.2E-07 47.2 9.8 79 229-307 29-116 (120)
175 PF10037 MRP-S27: Mitochondria 97.0 0.011 2.4E-07 59.9 12.8 117 156-272 63-185 (429)
176 PF07079 DUF1347: Protein of u 97.0 0.47 1E-05 47.5 31.3 422 2-438 17-532 (549)
177 PF04840 Vps16_C: Vps16, C-ter 97.0 0.46 1E-05 46.9 30.0 119 299-439 181-299 (319)
178 KOG2280 Vacuolar assembly/sort 96.9 0.75 1.6E-05 49.0 26.9 127 347-490 669-795 (829)
179 PRK15331 chaperone protein Sic 96.9 0.021 4.5E-07 49.2 11.8 89 405-493 43-133 (165)
180 PF05843 Suf: Suppressor of fo 96.8 0.0086 1.9E-07 58.3 10.3 124 297-425 3-133 (280)
181 COG4700 Uncharacterized protei 96.8 0.15 3.3E-06 44.5 16.2 134 357-493 84-221 (251)
182 PF13432 TPR_16: Tetratricopep 96.8 0.0028 6E-08 46.1 5.2 59 406-464 4-64 (65)
183 KOG0553 TPR repeat-containing 96.8 0.004 8.8E-08 58.4 7.2 93 370-466 89-184 (304)
184 PF12688 TPR_5: Tetratrico pep 96.7 0.043 9.2E-07 45.3 12.1 93 332-425 7-101 (120)
185 PF14559 TPR_19: Tetratricopep 96.7 0.0014 3.1E-08 48.1 3.1 53 442-494 2-54 (68)
186 PF13371 TPR_9: Tetratricopept 96.7 0.0038 8.2E-08 46.6 5.4 56 439-494 3-58 (73)
187 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 47.4 24.5 201 55-284 689-902 (1189)
188 KOG0553 TPR repeat-containing 96.7 0.02 4.3E-07 53.9 10.9 97 336-438 91-189 (304)
189 PRK15363 pathogenicity island 96.7 0.055 1.2E-06 46.4 12.8 89 229-320 39-128 (157)
190 PF06239 ECSIT: Evolutionarily 96.6 0.015 3.2E-07 52.3 9.3 88 122-209 45-153 (228)
191 CHL00033 ycf3 photosystem I as 96.6 0.037 8.1E-07 49.3 12.3 80 125-205 36-117 (168)
192 KOG2796 Uncharacterized conser 96.6 0.12 2.6E-06 47.6 14.9 127 128-254 181-315 (366)
193 PF13431 TPR_17: Tetratricopep 96.6 0.0012 2.6E-08 40.6 1.6 33 454-486 2-34 (34)
194 PF13525 YfiO: Outer membrane 96.6 0.35 7.6E-06 44.5 18.7 86 329-419 113-198 (203)
195 PF14559 TPR_19: Tetratricopep 96.6 0.011 2.3E-07 43.3 7.0 61 374-437 3-64 (68)
196 COG4235 Cytochrome c biogenesi 96.6 0.055 1.2E-06 51.3 13.0 101 396-496 153-258 (287)
197 COG4700 Uncharacterized protei 96.5 0.37 7.9E-06 42.2 16.6 63 258-320 87-149 (251)
198 PF06239 ECSIT: Evolutionarily 96.5 0.027 5.8E-07 50.7 10.2 97 315-414 34-153 (228)
199 KOG1920 IkappaB kinase complex 96.5 0.89 1.9E-05 51.1 23.4 157 208-425 894-1052(1265)
200 PF12688 TPR_5: Tetratrico pep 96.5 0.076 1.7E-06 43.8 11.9 91 231-321 7-101 (120)
201 PF13414 TPR_11: TPR repeat; P 96.4 0.0073 1.6E-07 44.4 5.2 65 398-462 2-69 (69)
202 KOG0550 Molecular chaperone (D 96.3 1 2.2E-05 44.7 20.2 87 335-425 258-347 (486)
203 COG3898 Uncharacterized membra 96.3 1.3 2.7E-05 43.7 26.2 288 126-425 84-389 (531)
204 PF13281 DUF4071: Domain of un 96.3 0.35 7.7E-06 48.2 17.4 158 301-463 147-337 (374)
205 PRK10153 DNA-binding transcrip 96.3 0.17 3.7E-06 53.6 16.3 69 361-433 419-488 (517)
206 KOG1538 Uncharacterized conser 96.3 0.5 1.1E-05 49.2 18.6 202 58-323 598-801 (1081)
207 KOG2053 Mitochondrial inherita 96.2 2.4 5.3E-05 46.3 39.6 193 61-255 44-256 (932)
208 PRK10803 tol-pal system protei 96.2 0.067 1.5E-06 51.2 11.8 94 329-425 146-243 (263)
209 PF09205 DUF1955: Domain of un 96.1 0.39 8.5E-06 39.4 13.6 140 337-497 13-152 (161)
210 PRK10866 outer membrane biogen 96.1 0.34 7.4E-06 45.9 16.0 175 200-389 38-239 (243)
211 KOG2796 Uncharacterized conser 96.1 0.26 5.5E-06 45.6 14.0 167 197-366 139-323 (366)
212 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.021 4.6E-07 57.4 7.9 96 398-496 74-176 (453)
213 PRK10803 tol-pal system protei 95.9 0.13 2.9E-06 49.1 12.2 102 363-464 144-250 (263)
214 PF03704 BTAD: Bacterial trans 95.9 0.1 2.2E-06 45.2 10.5 107 372-492 16-123 (146)
215 PF12921 ATP13: Mitochondrial 95.8 0.11 2.4E-06 43.2 10.0 49 358-407 48-96 (126)
216 PF12921 ATP13: Mitochondrial 95.8 0.12 2.7E-06 43.0 10.0 53 394-446 47-103 (126)
217 COG4235 Cytochrome c biogenesi 95.5 0.19 4.1E-06 47.7 11.3 109 325-438 155-267 (287)
218 KOG1130 Predicted G-alpha GTPa 95.4 0.084 1.8E-06 51.7 8.5 129 363-492 196-342 (639)
219 PF13371 TPR_9: Tetratricopept 95.3 0.05 1.1E-06 40.4 5.8 60 407-466 3-64 (73)
220 PF13525 YfiO: Outer membrane 95.3 0.99 2.1E-05 41.5 15.6 173 303-486 13-199 (203)
221 PF13428 TPR_14: Tetratricopep 95.3 0.027 5.8E-07 37.0 3.7 40 433-472 3-42 (44)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.9 8.5E-05 41.2 27.0 131 328-463 399-534 (660)
223 COG3898 Uncharacterized membra 95.0 4 8.7E-05 40.3 29.5 283 96-391 85-392 (531)
224 PF13424 TPR_12: Tetratricopep 95.0 0.035 7.6E-07 41.9 4.0 24 401-424 7-30 (78)
225 KOG1130 Predicted G-alpha GTPa 94.9 0.13 2.8E-06 50.5 8.4 256 134-390 27-343 (639)
226 KOG0543 FKBP-type peptidyl-pro 94.7 0.24 5.2E-06 49.0 9.8 63 432-494 258-320 (397)
227 PF07079 DUF1347: Protein of u 94.2 7.1 0.00015 39.5 34.8 189 296-492 299-522 (549)
228 KOG2610 Uncharacterized conser 94.2 1.2 2.7E-05 42.8 12.8 149 339-492 116-274 (491)
229 smart00299 CLH Clathrin heavy 94.2 3 6.5E-05 35.6 14.8 43 265-308 12-54 (140)
230 KOG3941 Intermediate in Toll s 94.2 0.47 1E-05 44.4 9.8 101 313-416 52-175 (406)
231 PF03704 BTAD: Bacterial trans 94.1 0.45 9.8E-06 41.1 9.6 57 330-388 66-122 (146)
232 PF13424 TPR_12: Tetratricopep 94.1 0.059 1.3E-06 40.7 3.5 61 432-492 6-73 (78)
233 KOG1941 Acetylcholine receptor 94.0 0.93 2E-05 44.1 11.8 165 327-491 84-272 (518)
234 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 0.33 7.1E-06 49.2 9.1 62 360-425 73-138 (453)
235 KOG3941 Intermediate in Toll s 93.9 0.4 8.7E-06 44.8 8.9 101 109-209 50-173 (406)
236 smart00299 CLH Clathrin heavy 93.8 3.6 7.8E-05 35.1 14.5 84 62-149 11-94 (140)
237 KOG2066 Vacuolar assembly/sort 93.8 12 0.00026 40.6 24.8 100 67-171 365-467 (846)
238 PF13281 DUF4071: Domain of un 93.8 5 0.00011 40.2 16.9 72 98-169 146-227 (374)
239 COG0457 NrfG FOG: TPR repeat [ 93.6 5.7 0.00012 36.5 26.1 196 295-494 59-265 (291)
240 KOG2041 WD40 repeat protein [G 93.5 12 0.00027 39.9 20.2 68 72-148 748-820 (1189)
241 PF04053 Coatomer_WDAD: Coatom 93.4 1.4 3E-05 45.7 12.9 132 335-495 270-403 (443)
242 KOG4555 TPR repeat-containing 93.3 0.74 1.6E-05 37.8 8.4 89 408-496 52-146 (175)
243 PF04053 Coatomer_WDAD: Coatom 93.2 5.3 0.00011 41.5 16.8 155 134-319 271-426 (443)
244 KOG1920 IkappaB kinase complex 93.0 10 0.00022 43.2 19.1 47 406-452 972-1020(1265)
245 COG1729 Uncharacterized protei 93.0 0.65 1.4E-05 43.6 8.9 82 411-494 153-244 (262)
246 PF08631 SPO22: Meiosis protei 92.9 9.8 0.00021 37.0 21.1 97 263-362 87-192 (278)
247 PF04097 Nic96: Nup93/Nic96; 92.8 6.9 0.00015 42.8 17.9 214 93-322 112-354 (613)
248 PF10300 DUF3808: Protein of u 92.5 4.5 9.6E-05 42.7 15.5 161 329-493 191-375 (468)
249 KOG0890 Protein kinase of the 92.2 37 0.00081 42.1 23.6 310 167-496 1391-1733(2382)
250 KOG0543 FKBP-type peptidyl-pro 92.2 1.2 2.6E-05 44.2 9.9 96 399-494 257-355 (397)
251 PRK11906 transcriptional regul 92.1 6.6 0.00014 40.2 15.2 145 342-490 274-432 (458)
252 COG0457 NrfG FOG: TPR repeat [ 91.9 10 0.00022 34.8 24.7 165 295-463 95-268 (291)
253 PRK09687 putative lyase; Provi 91.8 13 0.00029 36.1 26.3 119 294-425 141-260 (280)
254 KOG2114 Vacuolar assembly/sort 91.7 5.6 0.00012 43.4 14.6 111 336-456 378-488 (933)
255 KOG1585 Protein required for f 91.6 11 0.00024 34.9 15.6 46 297-354 93-138 (308)
256 PF09613 HrpB1_HrpK: Bacterial 91.6 6.8 0.00015 33.9 12.6 90 370-463 18-109 (160)
257 PF13170 DUF4003: Protein of u 91.3 9.9 0.00021 37.2 15.2 134 242-408 79-226 (297)
258 COG3118 Thioredoxin domain-con 91.1 15 0.00032 35.3 15.8 117 374-494 146-265 (304)
259 PRK09687 putative lyase; Provi 90.7 17 0.00037 35.3 27.0 74 294-373 205-278 (280)
260 PRK15331 chaperone protein Sic 90.6 3.5 7.6E-05 35.8 10.0 85 336-425 47-131 (165)
261 PRK11906 transcriptional regul 90.5 4.7 0.0001 41.2 12.4 117 377-494 273-401 (458)
262 PF13512 TPR_18: Tetratricopep 90.3 6.6 0.00014 33.3 11.2 55 337-391 21-76 (142)
263 COG4785 NlpI Lipoprotein NlpI, 90.3 14 0.00031 33.6 13.7 162 326-496 99-268 (297)
264 PF00515 TPR_1: Tetratricopept 90.3 0.41 8.9E-06 29.0 3.2 31 433-463 3-33 (34)
265 KOG4555 TPR repeat-containing 90.2 2 4.3E-05 35.4 7.7 53 336-390 53-105 (175)
266 PF13512 TPR_18: Tetratricopep 90.2 6 0.00013 33.5 10.9 51 374-424 22-72 (142)
267 COG1729 Uncharacterized protei 90.2 5.4 0.00012 37.7 11.7 95 328-425 144-241 (262)
268 PF02259 FAT: FAT domain; Int 89.8 15 0.00034 36.9 16.2 92 394-494 117-213 (352)
269 KOG2610 Uncharacterized conser 89.7 3.6 7.8E-05 39.7 10.2 115 374-491 115-235 (491)
270 KOG1258 mRNA processing protei 89.6 31 0.00067 36.5 30.4 183 293-480 295-490 (577)
271 COG4649 Uncharacterized protei 89.5 6.6 0.00014 34.3 10.6 49 105-153 70-123 (221)
272 PF10300 DUF3808: Protein of u 89.5 31 0.00067 36.4 22.7 155 129-286 193-373 (468)
273 COG4105 ComL DNA uptake lipopr 89.5 19 0.0004 33.9 18.7 56 438-493 174-232 (254)
274 PF07719 TPR_2: Tetratricopept 89.3 0.74 1.6E-05 27.7 3.8 30 434-463 4-33 (34)
275 PF09205 DUF1955: Domain of un 89.1 12 0.00026 31.1 14.0 63 329-395 89-151 (161)
276 COG1747 Uncharacterized N-term 88.5 34 0.00073 35.5 17.9 159 226-391 67-234 (711)
277 PF13428 TPR_14: Tetratricopep 88.4 1.2 2.7E-05 29.0 4.6 25 401-425 3-27 (44)
278 PF13176 TPR_7: Tetratricopept 88.4 0.78 1.7E-05 28.4 3.4 26 467-492 1-26 (36)
279 COG3629 DnrI DNA-binding trans 88.3 3.1 6.7E-05 39.8 8.9 76 295-371 153-236 (280)
280 PF07035 Mic1: Colon cancer-as 88.3 17 0.00037 31.9 12.8 133 144-288 14-148 (167)
281 KOG1258 mRNA processing protei 87.8 40 0.00087 35.7 25.9 119 362-485 297-420 (577)
282 PF04184 ST7: ST7 protein; In 87.8 30 0.00066 35.8 15.7 99 366-465 263-380 (539)
283 KOG1585 Protein required for f 87.6 24 0.00052 32.8 14.6 198 266-489 37-251 (308)
284 COG3629 DnrI DNA-binding trans 87.5 2.3 5E-05 40.7 7.5 61 433-493 155-215 (280)
285 COG4649 Uncharacterized protei 87.4 10 0.00022 33.2 10.4 17 337-353 105-121 (221)
286 PF13176 TPR_7: Tetratricopept 87.4 1.3 2.9E-05 27.3 4.0 26 328-353 1-26 (36)
287 KOG2114 Vacuolar assembly/sort 87.2 52 0.0011 36.3 26.9 75 405-480 711-786 (933)
288 PF02259 FAT: FAT domain; Int 87.2 35 0.00076 34.3 18.4 66 324-390 144-212 (352)
289 TIGR02508 type_III_yscG type I 87.1 11 0.00024 29.5 9.4 87 175-265 21-107 (115)
290 COG3118 Thioredoxin domain-con 86.5 32 0.00069 33.1 17.7 118 269-391 143-265 (304)
291 PF13170 DUF4003: Protein of u 86.0 12 0.00025 36.7 11.7 123 74-198 78-221 (297)
292 COG4105 ComL DNA uptake lipopr 86.0 31 0.00067 32.5 19.8 54 235-288 44-99 (254)
293 PF10602 RPN7: 26S proteasome 85.8 10 0.00022 33.9 10.4 58 297-354 38-101 (177)
294 KOG0276 Vesicle coat complex C 85.4 13 0.00029 39.0 12.0 150 307-491 598-747 (794)
295 PF07035 Mic1: Colon cancer-as 85.0 26 0.00056 30.8 13.0 134 44-188 15-149 (167)
296 KOG4234 TPR repeat-containing 84.3 5 0.00011 35.9 7.3 88 407-494 103-197 (271)
297 PF13431 TPR_17: Tetratricopep 83.9 2.1 4.5E-05 26.1 3.6 30 184-214 4-33 (34)
298 COG5107 RNA14 Pre-mRNA 3'-end 83.9 54 0.0012 33.5 29.2 142 295-443 397-547 (660)
299 PF04184 ST7: ST7 protein; In 83.4 61 0.0013 33.7 17.1 139 237-389 180-322 (539)
300 KOG4570 Uncharacterized conser 83.2 9.6 0.00021 36.6 9.2 98 289-391 58-164 (418)
301 PF09613 HrpB1_HrpK: Bacterial 82.5 6.8 0.00015 33.9 7.3 55 441-495 20-74 (160)
302 PF10602 RPN7: 26S proteasome 82.0 15 0.00033 32.8 9.8 61 126-186 38-100 (177)
303 PF11207 DUF2989: Protein of u 81.9 13 0.00027 33.7 9.0 75 343-419 123-198 (203)
304 TIGR02561 HrpB1_HrpK type III 81.5 7.5 0.00016 33.1 7.0 54 443-496 22-75 (153)
305 KOG1941 Acetylcholine receptor 80.9 42 0.00092 33.2 12.7 194 196-389 45-273 (518)
306 PHA02875 ankyrin repeat protei 80.9 70 0.0015 33.1 16.1 205 38-260 11-230 (413)
307 PF13181 TPR_8: Tetratricopept 80.5 2.2 4.7E-05 25.6 2.9 28 435-462 5-32 (34)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 80.3 11 0.00024 29.4 6.9 60 344-407 25-84 (103)
309 KOG4570 Uncharacterized conser 80.3 16 0.00034 35.2 9.5 100 88-189 59-165 (418)
310 PF00637 Clathrin: Region in C 80.1 1.1 2.4E-05 38.4 2.0 84 266-352 13-96 (143)
311 KOG1464 COP9 signalosome, subu 80.0 55 0.0012 31.0 13.5 232 208-444 41-317 (440)
312 PF00637 Clathrin: Region in C 80.0 1.4 2.9E-05 37.9 2.4 84 64-150 13-96 (143)
313 PF00515 TPR_1: Tetratricopept 79.5 5 0.00011 24.1 4.3 29 327-355 2-30 (34)
314 PF07721 TPR_4: Tetratricopept 79.4 2.3 4.9E-05 24.0 2.4 24 466-489 2-25 (26)
315 TIGR02561 HrpB1_HrpK type III 78.9 40 0.00088 28.8 10.7 19 204-222 54-72 (153)
316 KOG4648 Uncharacterized conser 78.6 3.2 7E-05 40.1 4.5 114 369-490 104-220 (536)
317 PF02284 COX5A: Cytochrome c o 78.0 9.4 0.0002 30.0 6.0 61 344-408 28-88 (108)
318 PF09477 Type_III_YscG: Bacter 77.9 33 0.00073 27.3 9.6 88 172-263 19-106 (116)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 77.6 13 0.00028 29.0 6.6 57 44-101 28-84 (103)
320 PF07719 TPR_2: Tetratricopept 77.5 3.2 7E-05 24.8 3.0 29 466-494 2-30 (34)
321 PF02284 COX5A: Cytochrome c o 77.3 12 0.00027 29.4 6.5 56 45-101 32-87 (108)
322 PF13374 TPR_10: Tetratricopep 76.3 5.7 0.00012 25.0 4.1 27 328-354 4-30 (42)
323 COG2976 Uncharacterized protei 76.1 60 0.0013 29.3 12.5 110 344-463 70-191 (207)
324 PF08631 SPO22: Meiosis protei 75.7 81 0.0018 30.6 22.5 20 472-491 253-272 (278)
325 PF07721 TPR_4: Tetratricopept 75.6 5.8 0.00013 22.3 3.4 22 402-423 4-25 (26)
326 PF04910 Tcf25: Transcriptiona 75.3 98 0.0021 31.4 16.7 122 292-425 37-165 (360)
327 PF13374 TPR_10: Tetratricopep 74.4 6.7 0.00014 24.7 4.0 28 226-253 3-30 (42)
328 PF13934 ELYS: Nuclear pore co 74.2 52 0.0011 30.8 11.3 103 329-442 79-183 (226)
329 TIGR02508 type_III_yscG type I 74.0 41 0.0009 26.5 8.9 87 276-367 21-107 (115)
330 PF13181 TPR_8: Tetratricopept 72.5 6.5 0.00014 23.5 3.4 28 466-493 2-29 (34)
331 PRK13342 recombination factor 71.9 1.2E+02 0.0026 31.5 14.6 115 141-273 154-278 (413)
332 PF11207 DUF2989: Protein of u 71.6 33 0.00072 31.0 8.8 79 134-214 117-198 (203)
333 PRK15180 Vi polysaccharide bio 71.5 23 0.0005 36.2 8.5 85 336-425 333-417 (831)
334 KOG4648 Uncharacterized conser 71.2 17 0.00037 35.4 7.3 86 333-431 104-198 (536)
335 KOG1464 COP9 signalosome, subu 70.8 97 0.0021 29.4 17.1 165 89-253 22-219 (440)
336 COG4455 ImpE Protein of avirul 69.2 95 0.0021 28.6 12.2 129 328-465 3-139 (273)
337 PF04190 DUF410: Protein of un 68.7 1.1E+02 0.0024 29.3 14.6 95 134-228 20-124 (260)
338 COG1747 Uncharacterized N-term 68.5 1.6E+02 0.0034 30.9 17.3 158 126-290 68-235 (711)
339 PRK10941 hypothetical protein; 68.2 33 0.00071 33.0 8.7 60 435-494 185-244 (269)
340 KOG2066 Vacuolar assembly/sort 68.1 2E+02 0.0043 31.9 24.0 125 195-326 393-536 (846)
341 KOG1586 Protein required for f 67.7 1.1E+02 0.0023 28.6 15.8 58 408-465 163-229 (288)
342 KOG1586 Protein required for f 66.7 1.1E+02 0.0024 28.5 13.2 24 368-391 160-183 (288)
343 PRK15180 Vi polysaccharide bio 66.7 43 0.00094 34.3 9.3 122 336-464 299-424 (831)
344 PF13174 TPR_6: Tetratricopept 66.4 6.3 0.00014 23.2 2.4 28 467-494 2-29 (33)
345 PRK11619 lytic murein transgly 66.4 2.1E+02 0.0046 31.6 31.5 117 339-459 254-374 (644)
346 PF04910 Tcf25: Transcriptiona 66.3 82 0.0018 31.9 11.6 64 430-493 99-167 (360)
347 PF13762 MNE1: Mitochondrial s 66.2 84 0.0018 26.9 10.8 51 122-172 77-128 (145)
348 COG3947 Response regulator con 65.3 20 0.00044 34.2 6.3 57 436-492 284-340 (361)
349 KOG0276 Vesicle coat complex C 64.4 64 0.0014 34.3 10.2 100 204-320 647-746 (794)
350 smart00028 TPR Tetratricopepti 64.2 13 0.00028 20.9 3.6 24 438-461 8-31 (34)
351 PF14853 Fis1_TPR_C: Fis1 C-te 63.3 7 0.00015 26.7 2.3 30 437-466 7-36 (53)
352 PF04097 Nic96: Nup93/Nic96; 62.8 2.4E+02 0.0053 31.0 16.6 214 194-425 112-353 (613)
353 PHA02875 ankyrin repeat protei 62.7 1.6E+02 0.0036 30.3 13.7 174 69-260 10-196 (413)
354 PF14669 Asp_Glu_race_2: Putat 60.1 1.3E+02 0.0028 27.0 12.4 97 318-425 99-207 (233)
355 PF10366 Vps39_1: Vacuolar sor 59.0 94 0.002 25.0 8.6 27 227-253 41-67 (108)
356 PRK13800 putative oxidoreducta 58.7 3.5E+02 0.0076 31.5 29.5 93 293-390 787-880 (897)
357 PRK12798 chemotaxis protein; R 57.9 2.3E+02 0.0049 29.1 21.1 181 308-493 125-323 (421)
358 KOG4642 Chaperone-dependent E3 57.6 25 0.00054 32.6 5.4 78 414-491 25-104 (284)
359 PF07163 Pex26: Pex26 protein; 57.5 1.1E+02 0.0025 29.2 9.7 73 231-305 89-163 (309)
360 COG4455 ImpE Protein of avirul 57.4 34 0.00074 31.3 6.1 63 402-464 4-68 (273)
361 COG3947 Response regulator con 57.3 1.9E+02 0.0041 28.0 12.9 57 298-354 282-341 (361)
362 PF13762 MNE1: Mitochondrial s 56.9 1.3E+02 0.0027 25.8 9.6 50 224-273 78-128 (145)
363 TIGR03504 FimV_Cterm FimV C-te 56.4 18 0.00039 23.6 3.2 26 470-495 4-29 (44)
364 KOG0991 Replication factor C, 55.7 1.8E+02 0.0039 27.2 11.2 147 200-372 136-282 (333)
365 PRK13800 putative oxidoreducta 55.6 3.9E+02 0.0085 31.1 25.1 256 214-493 624-880 (897)
366 PF06552 TOM20_plant: Plant sp 54.9 39 0.00085 30.0 6.0 45 447-491 51-99 (186)
367 PF04190 DUF410: Protein of un 54.5 2E+02 0.0044 27.5 16.0 83 293-391 88-170 (260)
368 PF07163 Pex26: Pex26 protein; 54.4 1.3E+02 0.0029 28.8 9.6 89 333-425 90-184 (309)
369 PF14853 Fis1_TPR_C: Fis1 C-te 54.2 68 0.0015 21.9 6.1 27 468-494 4-30 (53)
370 PF09477 Type_III_YscG: Bacter 54.0 1.1E+02 0.0025 24.5 8.7 78 275-355 21-98 (116)
371 KOG4234 TPR repeat-containing 53.9 80 0.0017 28.6 7.7 21 234-254 104-124 (271)
372 PF10579 Rapsyn_N: Rapsyn N-te 53.8 36 0.00078 25.5 4.7 19 402-420 46-64 (80)
373 PF10579 Rapsyn_N: Rapsyn N-te 53.8 32 0.0007 25.7 4.5 48 338-385 18-66 (80)
374 PF10366 Vps39_1: Vacuolar sor 53.6 1E+02 0.0022 24.9 7.9 28 327-354 40-67 (108)
375 KOG1308 Hsp70-interacting prot 52.7 11 0.00024 36.8 2.5 89 412-500 127-217 (377)
376 TIGR03504 FimV_Cterm FimV C-te 52.3 33 0.00072 22.4 3.9 24 231-254 5-28 (44)
377 PF11768 DUF3312: Protein of u 52.3 1.5E+02 0.0034 31.3 10.7 55 300-354 413-472 (545)
378 cd08819 CARD_MDA5_2 Caspase ac 52.0 1E+02 0.0022 23.7 6.9 65 77-143 21-85 (88)
379 COG2909 MalT ATP-dependent tra 49.7 4.4E+02 0.0094 29.9 22.5 23 300-322 623-645 (894)
380 PF13929 mRNA_stabil: mRNA sta 49.7 2.5E+02 0.0055 27.2 15.0 53 191-243 199-256 (292)
381 PF14561 TPR_20: Tetratricopep 49.4 30 0.00066 26.8 4.1 44 452-495 9-52 (90)
382 KOG4077 Cytochrome c oxidase, 49.4 1.1E+02 0.0024 25.4 7.2 59 345-407 68-126 (149)
383 PF11846 DUF3366: Domain of un 49.3 58 0.0013 29.5 6.7 30 396-425 141-170 (193)
384 PF13929 mRNA_stabil: mRNA sta 48.9 2.6E+02 0.0056 27.1 15.5 65 358-423 198-262 (292)
385 KOG2471 TPR repeat-containing 48.7 3.4E+02 0.0074 28.4 13.5 107 439-550 214-328 (696)
386 PF09986 DUF2225: Uncharacteri 48.1 64 0.0014 29.9 6.7 63 433-495 120-195 (214)
387 KOG4279 Serine/threonine prote 47.2 1.5E+02 0.0033 32.5 9.8 180 228-463 204-398 (1226)
388 cd08326 CARD_CASP9 Caspase act 47.1 83 0.0018 24.0 6.1 63 77-143 18-80 (84)
389 PF06552 TOM20_plant: Plant sp 46.7 69 0.0015 28.5 6.2 44 447-497 96-139 (186)
390 cd08819 CARD_MDA5_2 Caspase ac 45.4 1.4E+02 0.003 23.0 6.9 39 307-346 48-86 (88)
391 KOG0545 Aryl-hydrocarbon recep 45.3 1.5E+02 0.0032 27.9 8.2 89 406-494 185-293 (329)
392 COG5108 RPO41 Mitochondrial DN 45.1 99 0.0021 33.3 8.0 24 331-354 33-56 (1117)
393 COG5159 RPN6 26S proteasome re 45.0 2.9E+02 0.0064 26.6 11.5 49 334-383 11-66 (421)
394 PF11663 Toxin_YhaV: Toxin wit 44.9 34 0.00075 28.6 3.8 35 32-68 104-138 (140)
395 KOG3364 Membrane protein invol 44.8 1E+02 0.0022 26.0 6.5 49 446-494 50-100 (149)
396 KOG0292 Vesicle coat complex C 43.6 26 0.00057 38.7 3.8 117 339-489 606-722 (1202)
397 COG5159 RPN6 26S proteasome re 42.3 3.3E+02 0.007 26.3 18.2 64 360-423 202-270 (421)
398 PF14669 Asp_Glu_race_2: Putat 41.2 2.7E+02 0.0059 25.1 13.7 23 165-187 138-160 (233)
399 PRK10564 maltose regulon perip 40.8 52 0.0011 31.8 5.0 41 328-369 259-299 (303)
400 PRK10564 maltose regulon perip 40.5 48 0.001 32.1 4.7 40 227-266 259-298 (303)
401 KOG2034 Vacuolar sorting prote 40.0 6.1E+02 0.013 28.8 22.2 274 66-353 366-688 (911)
402 KOG0991 Replication factor C, 39.2 3.3E+02 0.0072 25.5 10.6 87 301-392 136-222 (333)
403 PF11848 DUF3368: Domain of un 38.6 1E+02 0.0022 20.4 4.8 33 236-268 13-45 (48)
404 KOG3807 Predicted membrane pro 38.1 3.6E+02 0.0077 26.6 9.9 49 335-386 284-335 (556)
405 COG2976 Uncharacterized protei 37.5 3.2E+02 0.0069 24.8 14.1 86 168-255 98-189 (207)
406 KOG0403 Neoplastic transformat 37.5 4.9E+02 0.011 27.0 18.5 335 30-376 218-616 (645)
407 PF11848 DUF3368: Domain of un 37.2 1.2E+02 0.0025 20.2 4.9 31 136-166 14-44 (48)
408 TIGR02270 conserved hypothetic 37.1 4.9E+02 0.011 26.9 25.2 47 191-237 97-143 (410)
409 PF14689 SPOB_a: Sensor_kinase 36.6 47 0.001 23.5 3.1 25 229-253 27-51 (62)
410 PF11663 Toxin_YhaV: Toxin wit 36.5 41 0.00089 28.1 3.1 32 338-372 107-138 (140)
411 PHA03100 ankyrin repeat protei 36.5 5.3E+02 0.012 27.1 15.8 15 44-58 49-63 (480)
412 PF14689 SPOB_a: Sensor_kinase 36.4 54 0.0012 23.3 3.4 27 329-355 26-52 (62)
413 KOG0376 Serine-threonine phosp 35.9 24 0.00051 36.3 2.0 93 369-465 11-106 (476)
414 cd08332 CARD_CASP2 Caspase act 35.3 1.5E+02 0.0033 22.9 6.0 58 78-139 23-80 (90)
415 PRK13342 recombination factor 35.1 5.3E+02 0.011 26.7 15.2 47 328-375 229-278 (413)
416 smart00386 HAT HAT (Half-A-TPR 34.9 46 0.00099 19.1 2.6 27 446-472 2-28 (33)
417 KOG2908 26S proteasome regulat 34.6 3.3E+02 0.0072 27.0 9.2 56 132-187 83-143 (380)
418 PF07575 Nucleopor_Nup85: Nup8 34.6 5.5E+02 0.012 28.0 12.4 20 32-51 154-173 (566)
419 KOG0686 COP9 signalosome, subu 33.9 5.3E+02 0.012 26.4 13.4 57 298-354 153-215 (466)
420 KOG2422 Uncharacterized conser 33.9 6.3E+02 0.014 27.2 12.0 121 372-495 248-408 (665)
421 PF11846 DUF3366: Domain of un 33.8 1.2E+02 0.0027 27.3 6.3 37 426-462 139-175 (193)
422 KOG4077 Cytochrome c oxidase, 33.6 2.3E+02 0.005 23.6 6.8 44 143-186 68-111 (149)
423 KOG1550 Extracellular protein 33.2 6.6E+02 0.014 27.3 21.3 275 208-495 226-539 (552)
424 PRK14700 recombination factor 32.7 4.3E+02 0.0093 25.9 9.7 46 229-274 127-175 (300)
425 PF02847 MA3: MA3 domain; Int 32.5 1.4E+02 0.003 24.0 5.8 20 201-220 9-28 (113)
426 KOG0292 Vesicle coat complex C 32.2 6.9E+02 0.015 28.5 11.9 131 303-459 651-781 (1202)
427 KOG4507 Uncharacterized conser 31.8 1.1E+02 0.0025 32.4 6.0 108 44-153 196-312 (886)
428 COG0735 Fur Fe2+/Zn2+ uptake r 30.9 2.3E+02 0.005 24.2 7.1 42 166-208 27-69 (145)
429 KOG4507 Uncharacterized conser 30.9 1.2E+02 0.0027 32.2 6.1 55 200-254 648-705 (886)
430 PF12968 DUF3856: Domain of Un 30.7 3.1E+02 0.0067 22.7 8.2 22 399-420 55-76 (144)
431 smart00638 LPD_N Lipoprotein N 30.7 7.4E+02 0.016 27.0 22.3 271 75-372 292-573 (574)
432 PF15469 Sec5: Exocyst complex 30.4 3.9E+02 0.0085 23.8 9.5 24 367-390 91-114 (182)
433 PF14863 Alkyl_sulf_dimr: Alky 30.1 1.5E+02 0.0032 25.4 5.6 63 415-480 57-119 (141)
434 PRK12357 glutaminase; Reviewed 30.0 5.6E+02 0.012 25.4 11.6 111 312-426 145-263 (326)
435 cd08326 CARD_CASP9 Caspase act 29.7 2.1E+02 0.0046 21.8 5.9 40 306-345 41-80 (84)
436 PRK11639 zinc uptake transcrip 29.2 2.3E+02 0.0049 25.1 6.9 15 175-189 41-55 (169)
437 PF09670 Cas_Cas02710: CRISPR- 29.1 6.4E+02 0.014 25.8 11.7 53 336-390 141-197 (379)
438 PF13934 ELYS: Nuclear pore co 29.0 4.8E+02 0.01 24.3 12.9 112 308-431 91-204 (226)
439 PF04034 DUF367: Domain of unk 28.6 3.5E+02 0.0075 22.6 7.4 53 399-451 66-119 (127)
440 KOG0890 Protein kinase of the 28.6 1.4E+03 0.03 29.6 28.9 125 99-231 1426-1552(2382)
441 smart00544 MA3 Domain in DAP-5 28.5 3.1E+02 0.0067 22.0 7.5 23 129-151 7-29 (113)
442 PF10475 DUF2450: Protein of u 28.4 2.9E+02 0.0063 27.0 8.2 53 199-253 103-155 (291)
443 COG5191 Uncharacterized conser 28.0 1.1E+02 0.0025 29.6 4.9 75 396-470 104-181 (435)
444 PF12862 Apc5: Anaphase-promot 27.8 1.4E+02 0.0029 23.3 4.8 25 469-493 45-69 (94)
445 PF11525 CopK: Copper resistan 27.8 24 0.00053 25.3 0.4 21 610-630 8-28 (73)
446 KOG2582 COP9 signalosome, subu 27.6 6.5E+02 0.014 25.4 16.3 140 55-205 72-226 (422)
447 KOG1498 26S proteasome regulat 27.6 6.7E+02 0.015 25.5 19.0 185 291-507 48-254 (439)
448 KOG2396 HAT (Half-A-TPR) repea 27.5 7.6E+02 0.016 26.1 22.6 281 110-400 268-565 (568)
449 KOG0551 Hsp90 co-chaperone CNS 27.5 2.3E+02 0.0049 28.1 6.8 91 401-491 83-179 (390)
450 PRK13341 recombination factor 27.4 9.4E+02 0.02 27.2 16.1 39 236-274 269-307 (725)
451 PRK11639 zinc uptake transcrip 27.3 2.5E+02 0.0054 24.8 6.9 57 357-416 21-77 (169)
452 PF11123 DNA_Packaging_2: DNA 26.9 1.2E+02 0.0025 22.4 3.6 32 74-106 13-44 (82)
453 PRK10941 hypothetical protein; 26.8 4.8E+02 0.01 25.1 9.1 63 404-466 186-250 (269)
454 PF10255 Paf67: RNA polymerase 26.1 2.3E+02 0.005 29.1 7.1 65 403-491 126-190 (404)
455 COG4976 Predicted methyltransf 26.1 88 0.0019 29.0 3.7 60 405-464 1-62 (287)
456 cd08323 CARD_APAF1 Caspase act 26.0 3.1E+02 0.0066 21.1 6.1 62 77-142 16-77 (86)
457 COG0735 Fur Fe2+/Zn2+ uptake r 25.8 3.5E+02 0.0076 23.1 7.3 62 351-416 11-72 (145)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 25.2 4E+02 0.0086 22.1 8.8 43 278-320 81-124 (126)
459 cd00280 TRFH Telomeric Repeat 24.9 4.8E+02 0.01 23.5 7.7 21 370-390 119-139 (200)
460 PF11768 DUF3312: Protein of u 24.7 5.2E+02 0.011 27.6 9.4 57 198-254 412-473 (545)
461 COG2909 MalT ATP-dependent tra 24.2 1.1E+03 0.024 26.9 23.6 218 206-424 427-684 (894)
462 PF10345 Cohesin_load: Cohesin 24.1 9.9E+02 0.021 26.3 30.5 186 57-252 29-252 (608)
463 COG5108 RPO41 Mitochondrial DN 24.0 4.2E+02 0.0092 28.9 8.5 47 164-210 33-81 (1117)
464 KOG2063 Vacuolar assembly/sort 24.0 1.2E+03 0.025 27.0 18.9 278 75-409 460-742 (877)
465 KOG2659 LisH motif-containing 23.9 5.9E+02 0.013 23.7 8.5 54 369-424 71-128 (228)
466 PF11838 ERAP1_C: ERAP1-like C 23.4 7.1E+02 0.015 24.4 20.7 84 377-460 145-230 (324)
467 PRK14962 DNA polymerase III su 22.9 9.2E+02 0.02 25.5 13.8 30 87-118 192-221 (472)
468 PF12968 DUF3856: Domain of Un 22.8 3.6E+02 0.0077 22.3 6.1 62 430-491 54-126 (144)
469 KOG4567 GTPase-activating prot 22.8 7.4E+02 0.016 24.4 9.8 42 145-186 264-305 (370)
470 PF10475 DUF2450: Protein of u 22.6 3.1E+02 0.0066 26.8 7.2 54 97-152 102-155 (291)
471 cd00280 TRFH Telomeric Repeat 22.6 5.2E+02 0.011 23.3 7.5 59 378-438 85-150 (200)
472 PF02847 MA3: MA3 domain; Int 22.4 1.4E+02 0.003 24.0 4.1 21 130-150 8-28 (113)
473 COG2912 Uncharacterized conser 22.3 5.3E+02 0.011 24.8 8.2 58 437-494 187-244 (269)
474 PF11838 ERAP1_C: ERAP1-like C 22.2 7.5E+02 0.016 24.2 17.4 25 210-234 56-82 (324)
475 PF12069 DUF3549: Protein of u 22.1 8E+02 0.017 24.5 12.7 89 199-290 171-260 (340)
476 KOG3824 Huntingtin interacting 21.9 1.9E+02 0.0041 28.1 5.1 57 410-466 127-185 (472)
477 cd07153 Fur_like Ferric uptake 21.8 2E+02 0.0043 23.2 5.0 45 130-174 6-50 (116)
478 PF11817 Foie-gras_1: Foie gra 21.8 2.8E+02 0.006 26.3 6.6 17 132-148 18-34 (247)
479 PHA03100 ankyrin repeat protei 21.7 9.4E+02 0.02 25.2 16.1 51 64-118 38-95 (480)
480 KOG1114 Tripeptidyl peptidase 21.7 1.3E+03 0.028 26.8 12.8 19 70-88 861-879 (1304)
481 smart00804 TAP_C C-terminal do 21.7 81 0.0017 22.5 2.1 23 340-362 39-61 (63)
482 TIGR02270 conserved hypothetic 21.4 9.2E+02 0.02 25.0 25.6 192 213-426 88-279 (410)
483 KOG1524 WD40 repeat-containing 21.3 4.7E+02 0.01 27.7 8.0 90 398-490 572-669 (737)
484 KOG0686 COP9 signalosome, subu 21.3 9E+02 0.02 24.8 12.3 58 95-152 152-215 (466)
485 PF06957 COPI_C: Coatomer (COP 20.8 2.1E+02 0.0045 29.6 5.6 47 432-492 301-347 (422)
486 COG4785 NlpI Lipoprotein NlpI, 20.7 6.9E+02 0.015 23.2 16.1 62 193-254 98-162 (297)
487 cd07153 Fur_like Ferric uptake 20.5 2.3E+02 0.005 22.8 5.1 44 333-377 7-50 (116)
488 smart00544 MA3 Domain in DAP-5 20.5 4.5E+02 0.0097 21.0 8.6 21 231-251 8-28 (113)
489 PF07720 TPR_3: Tetratricopept 20.5 2.2E+02 0.0049 17.5 3.8 15 473-487 9-23 (36)
490 PF11817 Foie-gras_1: Foie gra 20.1 4.3E+02 0.0093 25.0 7.5 21 332-352 184-204 (247)
491 PF15161 Neuropep_like: Neurop 20.1 50 0.0011 22.5 0.7 18 590-608 12-29 (65)
492 KOG4334 Uncharacterized conser 20.0 43 0.00092 34.3 0.6 150 52-207 409-573 (650)
493 PF03745 DUF309: Domain of unk 20.0 2.8E+02 0.0061 19.7 4.6 33 135-167 10-42 (62)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-122 Score=1014.02 Aligned_cols=607 Identities=36% Similarity=0.679 Sum_probs=596.1
Q ss_pred CCCChhhHHHhhhcCcHH---HHHHHHHHcC-CCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLT---KALIEMATLG-LEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~---~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
...++.+|.+|++.|+.. ++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.||+
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 346788999999998865 6788998765 789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHH
Q 006705 102 FYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQI 181 (634)
Q Consensus 102 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 181 (634)
+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh
Q 006705 182 HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV 261 (634)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 261 (634)
|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 006705 262 TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM 341 (634)
Q Consensus 262 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 341 (634)
||++++.+|++.|++++|.++|..+.+.|+++|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+++|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++|+++|++|.+. |+.||..||++++.+|++.|.+++|.++|+.|.+.+ |+.|+..+|++||++|++.|++++|.++
T Consensus 407 ~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 407 GTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-RIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999866 9999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCc
Q 006705 422 IKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 422 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
|++|+..|+..+|++|+.+|+.+|+.+.|+.+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhHHHHhhhhhHHHHHHHcccCCCC
Q 006705 502 RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKLALTFGLIGTPE 581 (634)
Q Consensus 502 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 581 (634)
+||+++++.+|.|+++|..||+.++||+++.++..+|++.||.||+.++++++++++|+..+.+||||||++|||+++||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccCccchhhhHHHhhhcCceeEEccCCccccccCCccCCCCCC
Q 006705 582 GAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGDYW 634 (634)
Q Consensus 582 ~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~~~ 634 (634)
|+||||+||||+|+|||+++||||++++|+|||||.+|||||+||+|||+|||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-120 Score=1020.78 Aligned_cols=622 Identities=37% Similarity=0.666 Sum_probs=607.1
Q ss_pred CCCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHH
Q 006705 2 RRPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQ 78 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 78 (634)
.+.|+.++|.++|+.+. .|+..+|+.+|++|+++|+.. ++|.+|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 233 ~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 233 VKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred hcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 35678899999998875 467789999999999999866 67899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 006705 79 RVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN 158 (634)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 158 (634)
++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 238 (634)
..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVF 318 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 318 (634)
|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 319 DNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 319 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
+.+ .+|+++||+||.+|+++|+.++|+++|++|.+. |+.||..||+.+|.+|++.|++++|.++|+.|.+.+ |+.|+
T Consensus 548 ~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-gi~P~ 624 (857)
T PLN03077 548 NSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY-SITPN 624 (857)
T ss_pred Hhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh-CCCCc
Confidence 999 999999999999999999999999999999999 999999999999999999999999999999999666 99999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
..+|++|+++|+++|++++|.+++++|+.+||..+|++|+.+|+.+++.+.|+.+.+++++++|+++..|..|+++|++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhh
Q 006705 479 GRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQ 558 (634)
Q Consensus 479 g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~ 558 (634)
|+|++|.++++.|+++|++++||+||+++++.+|.|+++|.+||+.++||..+.+|..+|++.||+||++.++ ++++++
T Consensus 705 g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~ 783 (857)
T PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVS 783 (857)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 557788
Q ss_pred HHHHhhhhhHHHHHHHcccCCCCCCcEEEEeccccCccchhhhHHHhhhcCceeEEccCCccccccCCccCCCC
Q 006705 559 KEKVLLGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIVEGTCSCGD 632 (634)
Q Consensus 559 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~ 632 (634)
|+..+++||||||++|||+++||++||||+||||+|+|||+++||||++.+|+|||||.+|||||++|+|||+|
T Consensus 784 k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 784 KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-76 Score=664.82 Aligned_cols=590 Identities=24% Similarity=0.368 Sum_probs=523.2
Q ss_pred CCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHH
Q 006705 22 TVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR 98 (634)
Q Consensus 22 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 98 (634)
..|+...++.++.+|++.|+.. ++|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.+..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3456677889999999999866 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 99 LIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 99 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
||.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||++++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 338 (634)
|..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.+||+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 418 (634)
.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|++++|
T Consensus 367 ~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 367 NGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERK--GLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred CCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 99999999999999999999999999999999987 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCcc
Q 006705 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498 (634)
Q Consensus 419 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 498 (634)
.++|++|+ +||.++|++++.+|.+.|+.++|..+++++.+..++|..+|..++.+|++.|.++.+.+++..|.+.|+.+
T Consensus 444 ~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 444 LEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99999997 57999999999999999999999999999876545556677766666666666666666666665555543
Q ss_pred CCc-----------------------------eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcc
Q 006705 499 DPG-----------------------------RSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSC 549 (634)
Q Consensus 499 ~~~-----------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~ 549 (634)
+.. .+|. .++.++..|+..++ +.+++++|.+.|+.||..+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------ILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVT 591 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCccc
Confidence 321 2343 23556666776654 7889999999999999988
Q ss_pred ccccCchhhHHHHh---hhhhHHHHHHHcccCCCCCCcEEEEeccccCccchhhhHHHhhhcCc------eeEEccCCcc
Q 006705 550 VLYDVDEEQKEKVL---LGHSEKLALTFGLIGTPEGAPIRVIKNLRICVDCHNFAKFVSKVYGR------KVSLRDKNRF 620 (634)
Q Consensus 550 ~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~------~~~~~d~~~~ 620 (634)
+...+..+.+.+.+ ....+.+...+|+.+...+.. ++++.+..+|+..+|.+++.+|+.. ..++..|+.+
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 76655544443322 234455555778776655544 7889999999999999999999633 2344555555
Q ss_pred ccccCCc
Q 006705 621 HHIVEGT 627 (634)
Q Consensus 621 h~~~~g~ 627 (634)
.+.+.|+
T Consensus 671 ~~~e~~e 677 (857)
T PLN03077 671 RHVELGE 677 (857)
T ss_pred CChHHHH
Confidence 4444443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-66 Score=575.05 Aligned_cols=491 Identities=15% Similarity=0.221 Sum_probs=447.5
Q ss_pred CCCccchhhhcccchhhhhcC-CCCCCCChhhHHHhhhcCcHHHH---HHHHHHcCCCCCHhhHHHHHHHHhccCCchHH
Q 006705 2 RRPKKQSRAFSSLTFTQQQLT-VPSFPPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEYDTLLNACVNQRTLRGG 77 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~---~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 77 (634)
.+.|++++|+++|+.+..... .++...+..++.+|++.|...++ |+.|. .||..+|+.+|.+|++.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHH
Confidence 356888999999999876543 34444456778888888877644 55554 39999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006705 78 QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR----ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----CChhh
Q 006705 154 DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK--SNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----RDVVS 227 (634)
Q Consensus 154 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~ 227 (634)
|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999987 67899999999999999999999999999999975 56799
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006705 308 CGSLTYSRRVFDNMS----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
+|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999995 689999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHH
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLG----RAG-------------------RVGEALEFIKNM---PFEPTAAILGSL 437 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~l 437 (634)
+|+.|.+. |+.||..+|++|+.+|. +++ ..++|..+|++| ++.||..+|+++
T Consensus 776 l~~~M~k~--Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 776 LLSQAKED--GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999987 99999999999998743 332 236799999999 778999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHh-ccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCc
Q 006705 438 LGACRVHYNVDIGEFVGQRLM-EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
+.++...+..+.+..+++.+. .-.+++..+|++|++.+.+. .++|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 988878888888877776654 23445678999999988432 368999999999999988763
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-63 Score=547.41 Aligned_cols=507 Identities=15% Similarity=0.209 Sum_probs=418.9
Q ss_pred cCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCC-CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHH
Q 006705 21 LTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGL-EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR 96 (634)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 96 (634)
...++.+.|..++..+++.|+.. ++|++|.+.|+ .|+..+++.++.+|.+.|.++.|..++..|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 34456677788888888887754 67888888884 56777888888888888888888888888763 888899
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 006705 97 TRLIVFYNKCECLSDARKMFDEMRE----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172 (634)
Q Consensus 97 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (634)
|.||.+|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999988864 788889999999999999999999999998888889999999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC------CCChhhHHHHHHHHHhcCChHHHHH
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP------ERDVVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~ 246 (634)
|++++|.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999888888999999999999999999999999998884 4788899999999999999999999
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---- 322 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---- 322 (634)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|..|.+.|+.||..+|++|+++|++.|++++|.++|+.|.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999998888899999999999999999999999999999988888998999999999999999999999998887
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHH
Q 006705 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 402 (634)
.||..+|++||.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.|++++|.++|++|.+. |+.||..+|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty 757 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITY 757 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHH
Confidence 368888999999999999999999999999888 88899999999999999999999999999998876 888999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc-----------------------CCchHHHHHHHH
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNM---PFEPTAAILGSLLGACRVH-----------------------YNVDIGEFVGQR 456 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~-----------------------~~~~~a~~~~~~ 456 (634)
+.|+.+|++.|++++|.+++.+| .+.||..+|++++..|... +..+.|..++++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999998888 6678888888888765421 112457777777
Q ss_pred HhccC-CCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 006705 457 LMEIE-PENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLS 535 (634)
Q Consensus 457 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 535 (634)
+.+.+ .++..+|..++.++.+.+.++.+.++++.|...+..++....-. ++.|...+ ..++..++
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~--------Li~g~~~~------~~~A~~l~ 903 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST--------LVDGFGEY------DPRAFSLL 903 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH--------HHHhhccC------hHHHHHHH
Confidence 77643 22467888888888888888888888888866655433222111 12222111 13578999
Q ss_pred HHHHHcCcccCCc
Q 006705 536 VKFKEAGYVPDMS 548 (634)
Q Consensus 536 ~~m~~~g~~p~~~ 548 (634)
++|...|+.|+.+
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-59 Score=514.05 Aligned_cols=485 Identities=23% Similarity=0.311 Sum_probs=417.2
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHH
Q 006705 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD-TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL 200 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 200 (634)
++..+|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH
Q 006705 201 LDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280 (634)
Q Consensus 201 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (634)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006705 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP 360 (634)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 360 (634)
++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+. |+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGA 440 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 440 (634)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~--g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT--GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh--CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999987 999999999999999999999999999999997 6899999999999
Q ss_pred HHhcCCchHHHHHHHHHhcc--CCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEEeC
Q 006705 441 CRVHYNVDIGEFVGQRLMEI--EPENAGNYVILSNLYASAGRWEDVTRVRELMKE-KAVTKDPGRSWIELDQILHTFHAS 517 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~ 517 (634)
|.++|+.++|..+++++.+. .| |..+|..++.+|++.|++++|.++|+.|.+ .|+.|+... |. .++.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y~-------~li~~ 471 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-YA-------CMIEL 471 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-hH-------hHHHH
Confidence 99999999999999998764 45 478999999999999999999999999976 578765422 21 12333
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhHHHHhhhhhHHH-HHHHcccCCCCCCcEEEEeccccCcc
Q 006705 518 DRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQKEKVLLGHSEKL-ALTFGLIGTPEGAPIRVIKNLRICVD 596 (634)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~~~~~~~~~l~~~~~ 596 (634)
....+..++ +.+++ ++.+..|+......-+..+.+.+.+ ...+.. ...+++.+......+.+++-+..+|+
T Consensus 472 l~r~G~~~e----A~~~~---~~~~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 472 LGREGLLDE----AYAMI---RRAPFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHhcCCHHH----HHHHH---HHCCCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 334444444 33444 4457888775422222222111100 000111 11244444444555666777889999
Q ss_pred chhhhHHHhhhcCceeEEc-------cCCccccccCCc
Q 006705 597 CHNFAKFVSKVYGRKVSLR-------DKNRFHHIVEGT 627 (634)
Q Consensus 597 ~~~~~~~~s~~~~~~~~~~-------d~~~~h~~~~g~ 627 (634)
..+|.++..+|..+.+-.. -.+..|.|-.|-
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 9999999999998865322 234556676553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.8e-27 Score=272.45 Aligned_cols=479 Identities=11% Similarity=0.055 Sum_probs=302.0
Q ss_pred CCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHH
Q 006705 3 RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79 (634)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 79 (634)
+.|++++|...++...+.. +.....+..+-..+...|+.. +.|....+.... +......++..+.+.|+++.|..
T Consensus 375 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHH
Confidence 3566777777777665432 122223334444455555544 334444433322 22334445566667777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006705 80 VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156 (634)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 156 (634)
+++.+.+.. +.+..+++.+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +
T Consensus 453 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 453 AAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 777766543 44556667777777777777777777776543 244556666677777777777777777776543 2
Q ss_pred CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHH
Q 006705 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIIS 233 (634)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 233 (634)
.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666667777777777777766654 44555666677777777777777777766543 34556777777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
.|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777776542 2344456666666667777777777777766653 4455666667777777777777
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|.++++.+.+ .+...|..+...+.+.|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777776653 24455666666677777777777777776654 34445566666667777777777777776665
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ..|...++++.+..|+++..+
T Consensus 765 ~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 765 T---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred h---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 3 2445666666777777777777777777665 223455566666666666666 556666666666666666666
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
..++.+|...|++++|.+.++++.+.+
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666777777777777666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1e-26 Score=267.80 Aligned_cols=478 Identities=12% Similarity=0.023 Sum_probs=401.0
Q ss_pred CCccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHH---HHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHH
Q 006705 3 RPKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTK---ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQR 79 (634)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 79 (634)
+.|++++|+..+....... +.+...+..+...+.+.|+..+ .|+++.+... .+...+..+...+...|+.+.|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHH
Confidence 4678889998888765432 2333445566667788887764 4555555432 255667777888889999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006705 80 VHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE 156 (634)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 156 (634)
.+..+.+... ........++..|.+.|++++|.++++.+.. ++..+|+.+...|...|++++|...|+++.... +
T Consensus 419 ~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 496 (899)
T TIGR02917 419 DLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-P 496 (899)
T ss_pred HHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-C
Confidence 9999988752 3345667788899999999999999998865 467789999999999999999999999998753 2
Q ss_pred CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHH
Q 006705 157 PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIIS 233 (634)
Q Consensus 157 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 233 (634)
.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .+...+..++.
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 575 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 345567778888899999999999999998875 56788899999999999999999999998743 35667888999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 234 GYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
.|.+.|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998753 5567789999999999999999999999998875 5567788899999999999999
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+. .+++...+..+...+...|++++|...|+.+..
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998764 36789999999999999999999999999886 355677888888899999999999999999985
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
. .|+..++..++.++.+.|++++|.+.+.++ ..+.+...+..+...|...|+.++|...++++.+..|+++..+
T Consensus 732 ~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 732 R----APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred h----CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4 566688888999999999999999999887 3345677888888999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..++.+|...|+ ++|.+.++++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999 8899999998765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=1.6e-29 Score=205.48 Aligned_cols=106 Identities=61% Similarity=1.008 Sum_probs=95.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhhH--------HHHhhhhhHHHHH
Q 006705 501 GRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVLYDVDEEQK--------EKVLLGHSEKLAL 572 (634)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 572 (634)
|+||+++ |.|++|+.+||+. ++..++...||.|+...++++++++.+ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6799876 9999999999987 455667789999999998888777654 5578999999999
Q ss_pred HHcccCCCCCCcEEEEecc-ccCccchhhhHHHhhhcCceeEEccCCcccccc
Q 006705 573 TFGLIGTPEGAPIRVIKNL-RICVDCHNFAKFVSKVYGRKVSLRDKNRFHHIV 624 (634)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 624 (634)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=3.7e-19 Score=206.43 Aligned_cols=474 Identities=12% Similarity=0.052 Sum_probs=275.6
Q ss_pred CccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHH---HHHHHHcCCCCCHhhH-----------------HH
Q 006705 4 PKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKA---LIEMATLGLEMRFEEY-----------------DT 63 (634)
Q Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~m~~~g~~p~~~~~-----------------~~ 63 (634)
.++.+.|.+.|....... +.+..........+.+.|+..++ +++..+. .|+...+ ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHH
Confidence 456677777777655432 22233344555566677766543 4444433 3443322 22
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhHHH-HHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCC
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRT-RLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAH 139 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 139 (634)
+.+.+...|++++|.+.++.+.+.. +++..... -+.......|+.++|.+.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 2334667788888888888877653 23322111 111222234778888888877765 3 44467777777777888
Q ss_pred hhHHHHHHHHHHHCCC------------------C--------------CChhhH---------------------HHHH
Q 006705 140 SFEALNLFIRMLRSDT------------------E--------------PNEFTF---------------------ATVL 166 (634)
Q Consensus 140 ~~~A~~~~~~m~~~g~------------------~--------------p~~~t~---------------------~~ll 166 (634)
+++|+..|+++..... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 8888888777644210 0 110000 0112
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CC---hhhHHHH----------
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RD---VVSCTAI---------- 231 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~l---------- 231 (634)
..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23456678888888888887764 44677777888888888888888888876643 21 1123222
Q ss_pred --HHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006705 232 --ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309 (634)
Q Consensus 232 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 309 (634)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 334667788888888888887753 2344556667777788888888888888887764 333444444444443 23
Q ss_pred CHHHHHHHHhhcCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccC
Q 006705 310 SLTYSRRVFDNMSERT------------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGG 376 (634)
Q Consensus 310 ~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g 376 (634)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 4455555544433210 112233344445555555555555555543 232 234444455555555
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHH--------------------------------------------HHHHHHHHHc
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHY--------------------------------------------GCVVDMLGRA 412 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~ 412 (634)
++++|...++.+.+.. +.+...+ ..+.+.+...
T Consensus 510 ~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 510 QRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 5555555555554321 1111111 1233445556
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 413 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|+.++|.++++.-| ++...+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++...
T Consensus 587 G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 587 GKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666432 3444556666777777888888888888888888877777788888888888888888777665
Q ss_pred h
Q 006705 493 E 493 (634)
Q Consensus 493 ~ 493 (634)
+
T Consensus 665 ~ 665 (1157)
T PRK11447 665 A 665 (1157)
T ss_pred c
Confidence 4
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=9.1e-19 Score=203.20 Aligned_cols=417 Identities=9% Similarity=0.011 Sum_probs=329.2
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCc---chHHHH---------
Q 006705 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNV---VSWTAM--------- 130 (634)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l--------- 130 (634)
-.++...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999999875 44778889999999999999999999998765 322 223333
Q ss_pred ---HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 131 ---ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 131 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 345678999999999999998863 2345667778888999999999999999999875 445666777888775 4
Q ss_pred CCHHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhccc
Q 006705 208 GRIHEARGVFECLPERD------------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLA 274 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 274 (634)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 67899999998876421 223555677888999999999999999875 454 456677888899999
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----Ch---------hhHHHHHHHHHhcCC
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER----TV---------ISWNAMLVGYSKHGM 341 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~---------~~~~~li~~~~~~g~ 341 (634)
++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998764 345555555666678899999999999988642 11 112345677889999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++|+++++ . .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.
T Consensus 589 ~~eA~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 589 EAEAEALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999987 2 2345566777888899999999999999999964 244688999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc------hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 422 IKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG------NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 422 ~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++.. ...| +...+..+..++...|++++|...++++.+..|+++. .+..++.++...|++++|.+.++....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 2334 4556777888899999999999999999988766443 455678999999999999999998853
Q ss_pred -CCCc
Q 006705 494 -KAVT 497 (634)
Q Consensus 494 -~~~~ 497 (634)
.|+.
T Consensus 740 ~~~~~ 744 (1157)
T PRK11447 740 ASGIT 744 (1157)
T ss_pred hcCCC
Confidence 3443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=7.1e-19 Score=173.46 Aligned_cols=379 Identities=16% Similarity=0.158 Sum_probs=256.0
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-H
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVL-T 167 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~ 167 (634)
-..+|+.+.+.+-..|++++|..+++.+.+ ..+..|-.+..++...|+.+.|...|.+.++ +.|+.+...+-+ .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 345666677777777777777777776654 3556777777777777777777777777665 455544333322 2
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHH
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A 244 (634)
..-..|.+++|...+-++++.. +.-..+|+.|...+-..|++..|+..|++...-| ..+|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 2334567777777777766653 2234566777777777777777777777765533 24666677777777777777
Q ss_pred HHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006705 245 IELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 245 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 323 (634)
+..|.+.... .|+. +.+..+...|-..|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 7777766653 4443 455556566667777777777777777654 33356777777777777777777777776653
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-
Q 006705 324 --R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE- 398 (634)
Q Consensus 324 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~- 398 (634)
| -..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|..-+++.. .+.|+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal----rI~P~f 421 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL----RIKPTF 421 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH----hcCchH
Confidence 2 345667777777777777777777777664 34543 566777777777777777777777777 45665
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|+..+|...++.+++++|+.+.+|..++.++-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 566777777777777777777777665 44554 3456677777777777777777777777777777777777666655
Q ss_pred hcCCcHH
Q 006705 477 SAGRWED 483 (634)
Q Consensus 477 ~~g~~~~ 483 (634)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 4444444
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=7.1e-19 Score=173.47 Aligned_cols=419 Identities=13% Similarity=0.129 Sum_probs=336.5
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 137 (634)
...|..-.-+.|++++|.+--..+-+.+ +.+....-.+-..|....+++....--....+ .-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444455567788888887554444332 22222222233456666666554433222222 2456899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY-VGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 215 (634)
|+.++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.+.....|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999984 55 4668999999999999999999999999875 45433 34455666667899999999
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 216 VFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 216 ~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
.+.+..+ | =.+.|+.|...+-.+|+...|+..|++.... .|+- ..|..+-..+...+.++.|...+.......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 9877654 3 3468999999999999999999999999874 5653 468888888888888999988888877654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLA 367 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ 367 (634)
+....++..|...|-..|.++.|+..+++..+ | -...|+.|..++-..|+..+|...|.+.... .|+ ..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---CCccHHHHHH
Confidence 44567778888889999999999999999875 3 3579999999999999999999999999875 454 477889
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-AILGSLLGACRVH 444 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 444 (634)
|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+. ..++.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 99999999999999999999985 3444 567899999999999999999999986 777874 4788999999999
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
|+...|.+.+.+++.++|.-..++..|..+|-.+|+..+|+.-++...+.
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999998899999999999999999999999998754
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.4e-19 Score=182.82 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=167.6
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-C------hhhHHHHHHHHHhcCChH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-D------VVSCTAIISGYAQLGLDE 242 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~ 242 (634)
...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555542 223344555555555555555555555544321 1 123444455555555555
Q ss_pred HHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 243 EAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
+|+.+|.++.+. . +.+..+++.++..|.+.|++++|.+.|+.+.
T Consensus 125 ~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 125 RAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 555555555443 1 2233444444555555555555555555443
Q ss_pred CCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 006705 323 ERT--------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394 (634)
Q Consensus 323 ~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 394 (634)
+.+ ...|..+...+.+.|++++|...|+++.+. .+.+...+..+...+.+.|++++|.++++.+.+. +
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 244 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--D 244 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 211 112344555666677777777777776654 1223445556666677777777777777776643 1
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 395 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
-.....+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|...++++.+..|++. .+..++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHH
Confidence 1112345666777777777777777777765 3345555556666777777777777777777777777653 4555555
Q ss_pred HHhh---cCCcHHHHHHHHHHhhCCCccCCc
Q 006705 474 LYAS---AGRWEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 474 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 501 (634)
.+.. .|+.+++..+++.|.+++++++|.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 458889999999999888888884
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=8.1e-19 Score=181.51 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=182.8
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-CC------cchHHHHHHHHHhCCCh
Q 006705 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RN------VVSWTAMISAYSQKAHS 140 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~ 140 (634)
+...|+++.|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.. ++ ...|..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345567777777777777664 33455677777777777777777777776654 21 13466677777777777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHH
Q 006705 141 FEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 141 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
++|+.+|+++.... +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 23556677777777777777777777777766543221 12344566666777777777777
Q ss_pred HccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 006705 217 FECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 217 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 293 (634)
|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...+..+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 776543 23446666667777777777777777777654322223445566666666666666666666666543 3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVISWNAMLVGYSK---HGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|+.++++.+|++|.+. +++|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 33444666666666666666666666554 2555566665555443 34666666666666665 5555554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.9e-17 Score=179.09 Aligned_cols=419 Identities=12% Similarity=0.014 Sum_probs=290.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 137 (634)
+...-..+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|...++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 444556677788888888888888765 46677788888888888888888888887655 2455788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|++++|+.-|......+.. +......++..... ..+........+.. +++...+..+.+ |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 8888888887766543211 11111111111111 11222222222221 222222222222 22221111111112
Q ss_pred ccCCCCCh---hhHHHHHHHH---HhcCChHHHHHHHHHHhhcC-CccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 218 ECLPERDV---VSCTAIISGY---AQLGLDEEAIELFRKLQVEG-MISN-YVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 218 ~~m~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
+...+-+. ..+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+...++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 1111111111 23468999999999998764 2343 345667777778899999999999999887
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
. +.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .+.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 4 34466788889999999999999999998753 36788999999999999999999999999875 233456777
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H-HHHHH
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-------A-ILGSL 437 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~l 437 (634)
.+..++.+.|++++|...|+...+. .+.+...++.+...|...|++++|++.|++. ...|+. . .++..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 7888899999999999999999863 3446789999999999999999999999985 333321 1 12222
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 233445699999999999999999998888999999999999999999999998653
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=6e-16 Score=171.97 Aligned_cols=476 Identities=9% Similarity=-0.001 Sum_probs=323.2
Q ss_pred ccchhhhcccchhhhhcCCCCCCCChhhHH--------HhhhcCcHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCch
Q 006705 5 KKQSRAFSSLTFTQQQLTVPSFPPNPQNLK--------TLCSNGQLTKALIEMATLGLEMRFEEYDTL-LNACVNQRTLR 75 (634)
Q Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~ 75 (634)
+++++|...++.+....+ -+...+..+.. .|.+.+.+.+.++ .......|+..+.... .+.|.+.++++
T Consensus 122 ~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 445566666766544321 11222222222 2666666667776 4444455555555555 88899999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHc-CCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006705 76 GGQRVHAHMIKTCYRPPVYLRTRLIVFYNK-CECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154 (634)
Q Consensus 76 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 154 (634)
.|..++..+.+.+ +.+..-...|-..|.. .++ +.|..+++...+.|...+.++...|.+.|+.++|..+++++...-
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999999987 3445556667778877 366 888888776555688899999999999999999999999886542
Q ss_pred CC-CChhhHHHHH------------------------------HHHhccCCcHHHHHHHH--------------------
Q 006705 155 TE-PNEFTFATVL------------------------------TSCAGAFGFELGKQIHS-------------------- 183 (634)
Q Consensus 155 ~~-p~~~t~~~ll------------------------------~~~~~~~~~~~a~~~~~-------------------- 183 (634)
.. |+..++...+ ..+.+.++++.+.++.+
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 22 3333332222 22233333333333211
Q ss_pred ---------HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C----ChhhHHHHHHHHHhcCC---hHHHH
Q 006705 184 ---------LIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R----DVVSCTAIISGYAQLGL---DEEAI 245 (634)
Q Consensus 184 ---------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~ 245 (634)
.+.+.. +-+....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 111110 11222222233344567888888888887654 1 22334466777777765 34443
Q ss_pred HH------------HHHH----------hh-cCC-cc--ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHH
Q 006705 246 EL------------FRKL----------QV-EGM-IS--NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 246 ~~------------~~~m----------~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
.+ ..+. .. .+. ++ +...+..+..++.. ++..+|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 1111 11 112 22 34455555555555 78888998777777654 4443344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
.+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. . +++...+..+.......|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence 445555789999999999998763 45556777788899999999999999999876 2 2333334444445566799
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQ 455 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 455 (634)
+++|...++...+ +.|+...|..+...+.+.|++++|+..+++. ...| +...+..+..++...|+.++|...++
T Consensus 592 ~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 592 PELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999984 4678889999999999999999999999987 3444 45567777789999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 456 RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 456 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999754
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=5.3e-16 Score=172.37 Aligned_cols=471 Identities=11% Similarity=0.003 Sum_probs=324.5
Q ss_pred CccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHHHHHHHHc-CCCCCHhhHHHHHHHHhccCCchHHHHHHH
Q 006705 4 PKKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATL-GLEMRFEEYDTLLNACVNQRTLRGGQRVHA 82 (634)
Q Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 82 (634)
.|++++|++.|+......|.- ...+..+...|.+.|+..++.....+. ...|+...|..++... ++.++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 588899999999886654333 555677888889999887665544432 2456655555555333 88889999999
Q ss_pred HHHHhCCCCChhHHHHHHHH--------HHcCCChHHHHHHHhhcCCCC--cchHHHH-HHHHHhCCChhHHHHHHHHHH
Q 006705 83 HMIKTCYRPPVYLRTRLIVF--------YNKCECLSDARKMFDEMRERN--VVSWTAM-ISAYSQKAHSFEALNLFIRML 151 (634)
Q Consensus 83 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 151 (634)
.+.+.. +.+..++..+... |.+.+....|++ .....|+ ....... ...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999885 4445566666665 777766666666 3333343 4334444 889999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCh
Q 006705 152 RSDTEPNEFTFATVLTSCAG-AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RDV 225 (634)
Q Consensus 152 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~ 225 (634)
+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+..++++.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 97533 33335555556666 366 666666442 3446888899999999999999999999987752 110
Q ss_pred hhH--H----------------------------HHHH------------------------------------------
Q 006705 226 VSC--T----------------------------AIIS------------------------------------------ 233 (634)
Q Consensus 226 ~~~--~----------------------------~li~------------------------------------------ 233 (634)
.+| + .++.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 000 0 0011
Q ss_pred ---------------------HHHhcCChHHHHHHHHHHhhc--CCccChhhHHHHHHHHhcccch---HHH--------
Q 006705 234 ---------------------GYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAAL---GHG-------- 279 (634)
Q Consensus 234 ---------------------~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~---~~a-------- 279 (634)
...+.|+.++|.++|+..... .-.++.....-++..+...+.+ ..+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 123345566666666655441 1122222333555555555442 112
Q ss_pred --------------HHHHHHHHHc-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH--HHhc
Q 006705 280 --------------KQVHSHVLRF-EI-PS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG--YSKH 339 (634)
Q Consensus 280 --------------~~i~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~--~~~~ 339 (634)
......+.+. +. ++ +...+..+..++.. |+.++|...|.+.....+..++.+..+ +.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 1111112111 11 33 56677778877776 788889987777654323345554444 4689
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+. . ++....+..+...+.+.|++++|.
T Consensus 523 Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999997653 455566667777889999999999999999864 2 333344444444555669999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 420 EFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 420 ~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+++. ...|+...|..+..++.+.|+.++|+..++++.+++|+++..+..++.++...|++++|.+.++...+.
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999986 556888899999999999999999999999999999999999999999999999999999999998764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.5e-16 Score=172.87 Aligned_cols=352 Identities=10% Similarity=-0.004 Sum_probs=263.2
Q ss_pred cCCChHHHHHHHhhcCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 105 KCECLSDARKMFDEMRE------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
+..+++.-.-.|..-++ -+..-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 45566666666665554 122334456677888899999999988888764333 33444555666678999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 006705 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255 (634)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (634)
...++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999888765 55667778888888999999999998887754 356678888888999999999999888886653
Q ss_pred CccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 006705 256 MISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAM 332 (634)
Q Consensus 256 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l 332 (634)
|+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333222222334677889999999888887765444445555667788889999999999988764 356778888
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 333 LVGYSKHGMGRE----VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 333 i~~~~~~g~~~~----A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
...|.+.|++++ |+..|++..+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 889999999885 78999988875 23345678888888999999999999999988642 3346677788899
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 409 LGRAGRVGEALEFIKNM-PFEPTAAILG-SLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 409 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++.+..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999887 3456654443 345678899999999999999999988853
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.4e-16 Score=173.82 Aligned_cols=400 Identities=7% Similarity=-0.019 Sum_probs=215.6
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 135 (634)
.-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+.
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333444455556677777777777666522 33444566677777777777777777776432 34455666667777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
..|++++|+..+++..... +.+.. +..+..++...|+.++|...++.+++.. +.+..++..+..++.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777777777777776641 22333 5556666667777777777777777654 3344555556666666777777777
Q ss_pred HHccCCCCChh--------hHHHHHHHHH-----hcCCh---HHHHHHHHHHhhc-CCccChh-hHHHHHHHHhcccchH
Q 006705 216 VFECLPERDVV--------SCTAIISGYA-----QLGLD---EEAIELFRKLQVE-GMISNYV-TYASVLTALSGLAALG 277 (634)
Q Consensus 216 ~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~ 277 (634)
.++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a----------- 239 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA----------- 239 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-----------
Confidence 7766554 211 1111111111 11112 4444444444432 1112111 01000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT--VI--SWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
....+..+...|++++|+..|+.+.+.+ .. .--.+...|...|++++|+..|+++.
T Consensus 240 --------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 240 --------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred --------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 0000112234455555555555554321 01 11113445555666666666666554
Q ss_pred HcCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC---------CccCC---hHHHHHHHHHHHHcCCHHHHH
Q 006705 354 EENKVKP--DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---------GFEPE---IEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 354 ~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---------~~~p~---~~~~~~li~~~~~~g~~~~A~ 419 (634)
......+ .......+..++...|++++|..+++.+.+..+ .-.|+ ...+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 4300000 012333444455556666666666665554210 00122 223455666666777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 420 EFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 420 ~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++++++ ..+.+...+..+...+...|++++|+..++++++++|+++..+..++..+.+.|++++|.++++.+.+.
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777765 122345566666677777777777777777777777777777777777777777777777777776543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=3e-15 Score=166.36 Aligned_cols=405 Identities=10% Similarity=0.014 Sum_probs=244.1
Q ss_pred ChhhHHHhhhcCcHHHHHHHHHHcC-CCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 006705 29 NPQNLKTLCSNGQLTKALIEMATLG-LEM-RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106 (634)
Q Consensus 29 ~~~~i~~~~~~~~~~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 106 (634)
....+......|+..++.....+.. ..| +...+..+..++...|++++|..+++..++.. +.+...+..+...+.+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3445556666777665543333322 233 44468889999999999999999999998874 44566777888999999
Q ss_pred CChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHH
Q 006705 107 ECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIH 182 (634)
Q Consensus 107 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 182 (634)
|++++|...+++..+ | +.. |..+...+...|++++|+..++++... .|+ ...+..+..++...+..+.|...+
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999998765 3 455 888999999999999999999999985 454 444555666777888899999888
Q ss_pred HHHHHhCCCCch------HHHHHHHHHHH-----hcCCH---HHHHHHHccCCC-----CChh-h----HHHHHHHHHhc
Q 006705 183 SLIIKSNFESHI------YVGSSLLDMYA-----KAGRI---HEARGVFECLPE-----RDVV-S----CTAIISGYAQL 238 (634)
Q Consensus 183 ~~~~~~g~~~~~------~~~~~li~~y~-----~~g~~---~~A~~~~~~m~~-----~~~~-~----~~~li~~~~~~ 238 (634)
+.+.+ .|+. .....++..+. ..+++ ++|++.++.+.. |+.. . ....+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 76653 2221 12222333332 22234 677777776652 2211 1 11113445677
Q ss_pred CChHHHHHHHHHHhhcCCc-cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS---YVVLQNSLIDMYSKCGSLTYS 314 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 314 (634)
|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...+..+.+..... .......|..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999877532 322 12223556667777777777777666543111 012233344444555555555
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 315 RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 315 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
..+++.+.+.+.... .++. .. .-.|+. ..+..+...+...|++++|+..++++...
T Consensus 330 ~~~l~~~~~~~P~~~-----------------~~~~---~~-~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 330 LTVTAHTINNSPPFL-----------------RLYG---SP-TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHhhcCCceE-----------------eecC---CC-CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555554442110000 0000 00 011221 12334444555666666666666666542
Q ss_pred cCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 392 KDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 392 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.+...+..+...+...|++++|++.+++. ...|+ ...+..+...+...+++++|+.+++++++..|+++
T Consensus 389 ---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 389 ---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 2334556666666666666666666666665 33343 33444455556666666666666666666666654
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.6e-15 Score=164.99 Aligned_cols=323 Identities=11% Similarity=0.018 Sum_probs=195.0
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 135 (634)
.....++..+.+.|+++.|..+++..+.....+ ......++......|++++|...|+++.+ | +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334556667777788888888888777765333 33344444555567888888888877754 2 4456777777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
+.|++++|+..|++.... .|+ ...+..+...+...|++++|...+..+..... .+...+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 778888888888777663 343 44566666677777777777777776665542 222233223 2356677777777
Q ss_pred HHHccCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHH----HHHHHHHH
Q 006705 215 GVFECLPER----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGH----GKQVHSHV 286 (634)
Q Consensus 215 ~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~i~~~~ 286 (634)
..++.+... +...+..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 777665432 22233344556667777777777777776543 2234445555566666666654 56666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. +.+..++..+...+.+.|++++|...+++..+ | +...+..+...|.+.|++++|++.|+++... .|+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccch
Confidence 6553 34555666666666666666666666665542 2 3445555666666666666666666666543 23332
Q ss_pred H-HHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 364 T-YLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 364 t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
. +..+..++...|+.++|...|+...+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 222344556666666666666666543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=4.6e-14 Score=153.93 Aligned_cols=428 Identities=10% Similarity=0.002 Sum_probs=246.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH---HHHHHhC
Q 006705 61 YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM---ISAYSQK 137 (634)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~ 137 (634)
|...+- ..+.|++..|...+.+..+........++ .++..+...|+.++|+..+++...|+...+..+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 443333 24667777777777777765321112233 677777777777777777777766544333332 3356666
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|++++|+++|+++.+.... +...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 7777777777777764321 3445555566677777777777777777654 344444444444444455555577777
Q ss_pred ccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhH------HHHHHHH-----hcccch---HHHH
Q 006705 218 ECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY------ASVLTAL-----SGLAAL---GHGK 280 (634)
Q Consensus 218 ~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~-----~~~~~~---~~a~ 280 (634)
+++.+ | +...+..+..+..+.|-...|+++..+-... ..|...-. ...++-- ....++ +.|.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 77654 2 4455566667777777777776655432211 11111000 0011000 011122 2233
Q ss_pred HHHHHHHHc-C-CCCchhH-HHHH---HHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 281 QVHSHVLRF-E-IPSYVVL-QNSL---IDMYSKCGSLTYSRRVFDNMSERT----VISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 281 ~i~~~~~~~-~-~~~~~~~-~~~l---i~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
.-++.+... + .++.... ..+. +-++.+.|+..++++.|+.+.... ..+--++.++|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 333333321 1 1222111 2222 334556677777777777777332 2234456677777777777777777
Q ss_pred HHHHcCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-C--------ccCC---hHHHHHHHHHHHHcCC
Q 006705 351 LMREENK----VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-G--------FEPE---IEHYGCVVDMLGRAGR 414 (634)
Q Consensus 351 ~m~~~~g----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--------~~p~---~~~~~~li~~~~~~g~ 414 (634)
++....+ ..++......|.-++...+++++|..+++.+.+..+ . -.|+ ...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 7755411 112223345667777777777777777777775311 0 0122 2234445666777777
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 415 VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 415 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+.+|++.++++ .-+-|...+..+...+...|.+..|+..++.+..++|++..+...++..+...|+|.+|.++.+...
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777777776 2234666677777777777777777777777777777777777777777777777777777776664
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 43
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=2.4e-14 Score=156.28 Aligned_cols=217 Identities=10% Similarity=-0.060 Sum_probs=176.7
Q ss_pred ccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHH
Q 006705 273 LAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
.+.+++|.+.+...++.+ .+.....++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999998865 234566788888999999999999999998764 3 35688888999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 348 LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 348 ~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
.|++..+. -+.+...+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|+..|++. .
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999875 2345678888888999999999999999999863 2345777888999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHH-------HHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 427 FEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI-------LSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 427 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..| +...|+.+...+...|++++|...+++++++.|++...+.. ....|...|++++|.+++++....
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333 56788889999999999999999999999999875443322 122334469999999999988654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3.2e-13 Score=147.38 Aligned_cols=423 Identities=8% Similarity=-0.039 Sum_probs=311.2
Q ss_pred hhhcCcHHHHHHHHHH-cCCCCCH--hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHH
Q 006705 36 LCSNGQLTKALIEMAT-LGLEMRF--EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDA 112 (634)
Q Consensus 36 ~~~~~~~~~~~~~m~~-~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 112 (634)
..++|+...+++.+.+ ....|+. ..+ .++..+...|+.++|...++..... -.........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4678887755544433 2245554 234 7888888889999999999998821 122233333345688889999999
Q ss_pred HHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006705 113 RKMFDEMRE--R-NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189 (634)
Q Consensus 113 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 189 (634)
.++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999876 3 4566778889999999999999999999874 5666666444444545666666999999999885
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-Chhh--H--HHHHHHHH---------hcCC---hHHHHHHHHHHh
Q 006705 190 FESHIYVGSSLLDMYAKAGRIHEARGVFECLPER-DVVS--C--TAIISGYA---------QLGL---DEEAIELFRKLQ 252 (634)
Q Consensus 190 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~--~--~~li~~~~---------~~g~---~~~A~~~~~~m~ 252 (634)
+.+...+..++....+.|-...|.++..+-+.- +... | ...+.-.+ ...+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 667888888999999999999999988876531 1111 1 00011111 1122 345566666655
Q ss_pred hc-CCccChh-h----HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 006705 253 VE-GMISNYV-T----YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-- 324 (634)
Q Consensus 253 ~~-g~~p~~~-t----~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-- 324 (634)
.. +-.|... - ..-.+-++...++..++.+.++.+...+.+.-..+--++.++|...+.+++|..+|..+...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223322 2 22346678889999999999999999887666678899999999999999999999987532
Q ss_pred -------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----------CCCCH--H-HHHHHHHHHhccCcHHHHHHH
Q 006705 325 -------TVISWNAMLVGYSKHGMGREVVELFNLMREENK----------VKPDS--V-TYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 325 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g----------~~pd~--~-t~~~ll~a~~~~g~~~~a~~~ 384 (634)
+......|.-+|...+++++|..+++++.+... -.||. . .+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233357789999999999999999999987411 01332 2 334456668899999999999
Q ss_pred HHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
++.+... -+-|......+.+.+...|.+.+|++.++.. ...|+ ..+......+....+++++|+.+.+.+.+..|
T Consensus 439 le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999863 3558999999999999999999999999876 33454 45566777888889999999999999999999
Q ss_pred CCCc
Q 006705 463 ENAG 466 (634)
Q Consensus 463 ~~~~ 466 (634)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 9864
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.4e-13 Score=141.94 Aligned_cols=412 Identities=11% Similarity=0.070 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCC------cchHHHHHHHHHhCCChhHHHHHHH
Q 006705 75 RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN------VVSWTAMISAYSQKAHSFEALNLFI 148 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~ 148 (634)
..|.+++....... ..++.+.+.|.+.|.-.|++..++.+...+...+ ..+|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443332 3345555555555555555555555555443311 1234445555555566666665555
Q ss_pred HHHHCCCCCChh--hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC----CHHHHHHHHccCCC
Q 006705 149 RMLRSDTEPNEF--TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG----RIHEARGVFECLPE 222 (634)
Q Consensus 149 ~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~ 222 (634)
+-... .||.+ .+..+...+...|+++.+...|+.+.+.. +.+..+.-.|...|+..+ ..+.|..+..+...
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 54432 23322 23334445555555555555555555542 333444444444444442 22333333332222
Q ss_pred -----------------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhc---CCcc
Q 006705 223 -----------------------------------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE---GMIS 258 (634)
Q Consensus 223 -----------------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 258 (634)
.-+...|.+...+...|++++|...|...... -..+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 23344555566666677777777777666543 1233
Q ss_pred Chh------hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhH
Q 006705 259 NYV------TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISW 329 (634)
Q Consensus 259 ~~~------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~ 329 (634)
|.. +--.+....-..++.+.|.+.|..+++.. |.-+..|--|..+.-..+...+|...+.... ..|+..|
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 331 11123333345566777777777776653 2222222222222222345667777777665 3466777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhhhccCCccC
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH------------GGMEDRGLAVFHEIVDCKDGFEP 397 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~~p 397 (634)
+-+...+.....+..|.+-|....+.....+|..+..+|.+.|.. .+..++|+++|..+.+. -+.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~---dpk 644 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN---DPK 644 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc---Ccc
Confidence 777778888888888888777766653344677777777665432 24567899999998864 355
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC-C-CCCchHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE-P-ENAGNYVILSN 473 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~ 473 (634)
|...-|-+.-.++..|++.+|..+|.+.. ...+..+|-.+...|...|++..|.++++..++.. + +++.....|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 78888889999999999999999999872 12345689999999999999999999999887643 2 35677889999
Q ss_pred HHhhcCCcHHHHHHHHHHhhC
Q 006705 474 LYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++.+.|.+.+|.+........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998887654
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.9e-12 Score=135.35 Aligned_cols=426 Identities=10% Similarity=0.063 Sum_probs=296.1
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH---HcC---CChHHHHHHHhhcC---CCCcchHHHHHHHHHhCC
Q 006705 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY---NKC---ECLSDARKMFDEMR---ERNVVSWTAMISAYSQKA 138 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 138 (634)
+.+.++.+.|+..|....+.+ | ...++++..+ ... ..+..+..++...- ..|++..|.|.+-|.-.|
T Consensus 209 f~kl~~~~~a~~a~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 209 FWKLGMSEKALLAFERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHhccchhhHHHHHHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 346667777777777776653 2 2222222211 111 23344444444332 257888888999999999
Q ss_pred ChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 139 HSFEALNLFIRMLRSDTE--PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
+++.++.+...+...... .-...|-.+.+++-..|++++|...|-+..+..-..-+..+-.|..+|.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999998888764311 123457788889999999999999998877654222234455688999999999999999
Q ss_pred HccCCC--C-ChhhHHHHHHHHHhcC----ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHH----
Q 006705 217 FECLPE--R-DVVSCTAIISGYAQLG----LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSH---- 285 (634)
Q Consensus 217 ~~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~---- 285 (634)
|+.+.. | +..+...+...|+..+ ..+.|..++.+....- +.|...|..+-..+-... ...+...+..
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 998754 3 4456666777777765 4566777776666543 445566666655554433 3333544443
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-------TV------ISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
+...+.++-+.+.|.+...+...|++..|...|+..... |. .+--.+...+-..++.+.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334565677889999999999999999999999876532 22 11222455666778999999999999
Q ss_pred HHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH----hCCC
Q 006705 353 REENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK----NMPF 427 (634)
Q Consensus 353 ~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~ 427 (634)
.+. .|.-+ .|..++......+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|. +...
T Consensus 523 lke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~---~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 523 LKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN---IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh---cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 986 46653 455555344456788899999999886 446677788888889988888888877444 4444
Q ss_pred CCCHHHHHHHHHHHHhc------------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 428 EPTAAILGSLLGACRVH------------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.+|..+.-+|.+.|... +..+.|.+.+.++++.+|.|..+-+-++-+++..|++.+|..||.+..+..
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 57888887777765432 235678889999999999998888889999999999999999999998875
Q ss_pred CccCCceeEEEE
Q 006705 496 VTKDPGRSWIEL 507 (634)
Q Consensus 496 ~~~~~~~s~~~~ 507 (634)
..-. ..|+.+
T Consensus 677 ~~~~--dv~lNl 686 (1018)
T KOG2002|consen 677 SDFE--DVWLNL 686 (1018)
T ss_pred hhCC--ceeeeH
Confidence 5222 257643
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.3e-13 Score=130.18 Aligned_cols=411 Identities=12% Similarity=0.054 Sum_probs=286.6
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHH-HHHHHHHHcCCChHHHHHHHhhcCC--CC------cchHHHHHH
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLR-TRLIVFYNKCECLSDARKMFDEMRE--RN------VVSWTAMIS 132 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~ 132 (634)
..|.+.|.......+|+..++.+++....|+.-.. -.+-+.|.+...+.+|.+.+..... |+ +...|.+--
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 33444555666678888889988887766665433 2345678888899999998765432 22 224555556
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC------------CchHHHHHH
Q 006705 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE------------SHIYVGSSL 200 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l 200 (634)
.|.+.|++++|+.-|+...+. .||..+-..++-++...|+-+..++.|..++..-.. |+....|--
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 788999999999999998874 688777666666777789999999999998864322 222222222
Q ss_pred HH-----HHHhcC--CHHHH----HHHHccCCCCChh---hHH------------------HHHHHHHhcCChHHHHHHH
Q 006705 201 LD-----MYAKAG--RIHEA----RGVFECLPERDVV---SCT------------------AIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 201 i~-----~y~~~g--~~~~A----~~~~~~m~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~ 248 (634)
|. -.-+.+ +.+++ .++..-+..||-. -|. .-..-|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 11111 1222222223211 111 0123478899999999998
Q ss_pred HHHhhcCCccChhhHHHH--HH---------------------------H-------HhcccchHHHHHHHHHHHHcCCC
Q 006705 249 RKLQVEGMISNYVTYASV--LT---------------------------A-------LSGLAALGHGKQVHSHVLRFEIP 292 (634)
Q Consensus 249 ~~m~~~g~~p~~~t~~~l--l~---------------------------~-------~~~~~~~~~a~~i~~~~~~~~~~ 292 (634)
+-+.+..-+.-...-+.+ +. + ....|++++|.+.+.+.+.....
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 877654322111111111 10 0 11347888888888888876544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+...|-...+..+|++++-+.... ++.|+..+.-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHH
Confidence 3344444 3334677899999999988765 356667777788888889999999998777654 666778888888
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGA-CRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~ 447 (634)
..|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|+..|++. -++|+..-|..++.. +++.|++
T Consensus 600 dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 999999999999887765543 56778899888999999999999999999987 568999999999855 5788999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
..|..+++...+..|.+......|+.++...|.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999988885
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.5e-11 Score=115.82 Aligned_cols=291 Identities=15% Similarity=0.172 Sum_probs=208.2
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH---HHcCCCh------------------------HH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF---YNKCECL------------------------SD 111 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~------------------------~~ 111 (634)
.|=+.|++. ...|.++.+.-+++.|...|.+.+..+--.|... |-...-. +-
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555554 3567788888999999988877776665555432 2221111 11
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 006705 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE 191 (634)
Q Consensus 112 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 191 (634)
|. ++-+...++..+|..||.|+++--..+.|.+++++-.....+.+..+||.++.+-+- ..++.+..+|+...+.
T Consensus 196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 22 333333456778999999999999999999999999988888999999999987543 3448899999999999
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCChhhHHHHHHHHHhcCChHH-HHHHHHHHhhc----CCc-
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVF----ECLP----ERDVVSCTAIISGYAQLGLDEE-AIELFRKLQVE----GMI- 257 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~- 257 (634)
||..|+|+++.+.++.|+++.|++.+ .+|+ +|...+|.-+|..+.+-+++.+ |..++.+++.. ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988776654 3443 4788899999998888888755 44455554432 222
Q ss_pred --c-ChhhHHHHHHHHhcccchHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----
Q 006705 258 --S-NYVTYASVLTALSGLAALGHGKQVHSHVLRFE----IPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSE---- 323 (634)
Q Consensus 258 --p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---- 323 (634)
| |..-|.+.+..|.+..+.+.|.+++..+.... ++++ ..-|..+....+....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2 34557788888999999999999888665421 2232 23345566777777778888888888764
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
|+..+...++++..-.|+++-.-++|..|...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 45666666777777777777777777777665
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=3.2e-11 Score=125.58 Aligned_cols=331 Identities=14% Similarity=0.134 Sum_probs=190.4
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
|+.++|.+++.+..+.. +-+...|.++...+-..|+.+++...+-.+-... +.|...|-.+.+...+.|+++.|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555555432 2234455555555555555555544443332222 334455555555555555555555555
Q ss_pred ccCCCCChhhHH---HHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc
Q 006705 218 ECLPERDVVSCT---AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294 (634)
Q Consensus 218 ~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 294 (634)
.+..+.++.-|- --+..|-+.|+...|+.-|.++.....+.|..-+..+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~---------------------------- 282 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL---------------------------- 282 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH----------------------------
Confidence 544432222121 2233455555555555555555543211111111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMREE-------------- 355 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 355 (634)
.-..+..|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+...
T Consensus 283 ---i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 283 ---IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 11122333334444444444444332 12334555555555555566665555555441
Q ss_pred ------------CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--ccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 356 ------------NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--FEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 356 ------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
.++.++... .-+.-+..+....+....+....... . ..-+...|.-+.++|...|++.+|+++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~--n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED--NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh--cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 012222222 12222344455555555555555554 4 344678899999999999999999999
Q ss_pred HHhCC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCcc
Q 006705 422 IKNMP---FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTK 498 (634)
Q Consensus 422 ~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 498 (634)
|..+. .-.+...|--+..++...|.+++|.+.+++++.+.|++..+-..|..+|.+.|+.++|.+++..|...+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99882 223577999999999999999999999999999999999999999999999999999999999987433223
Q ss_pred CCceeE
Q 006705 499 DPGRSW 504 (634)
Q Consensus 499 ~~~~s~ 504 (634)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 345555
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2e-14 Score=140.87 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=109.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHH-HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 232 ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL-TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
...+.+.|++++|++++++-.....+|+...|-.++ ..+...++.+.|.+.++.+...+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 344455556666666554433322233333333322 233345556666666666655542 245556666666 57788
Q ss_pred HHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 311 LTYSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 311 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
+++|.+++...- .++...+..++..+.+.++++++.+++++.......+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888777654 346677778888888999999999999987765234556677888888889999999999999999
Q ss_pred hhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 389 VDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 389 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+. .| +....+.++..+...|+.+++.++++.. ..+.|...|..+..++...|+.+.|...++++.+..|+|+
T Consensus 173 l~~----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LEL----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHc----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 864 45 5778888999999999999877777665 1134556788999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=7.1e-11 Score=112.76 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=181.5
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC----CCcchHHHHH
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE----RNVVSWTAMI 131 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li 131 (634)
-+..||.++|...++-...+.|++++.+........+..++|.+|.+-+-..+ .+++.+|.. ||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 36678899999988888889999998888777667888888988865443222 566666653 8999999999
Q ss_pred HHHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH-HHHHHHHHHHh--C--C----CCchHHHH
Q 006705 132 SAYSQKAHSFE----ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL-GKQIHSLIIKS--N--F----ESHIYVGS 198 (634)
Q Consensus 132 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~----~~~~~~~~ 198 (634)
+..++.|+++. |++++.+|++-|+.|...+|..+|....+.++..+ +..+...+... | + +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999997764 56778888889999999999999888888777644 33333333321 1 2 23455667
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHH
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPE--------R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVL 267 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 267 (634)
.-++.|.+..+.+-|.++-.-... + ...-|..+....++....+.-+.+|..|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 777888888888888777543332 1 12345567777888888899999999998887889999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 268 TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
+|....+.++-..+++..++..|.........-++..++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 999999999999999998888875544444333333333
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=4e-11 Score=124.19 Aligned_cols=427 Identities=11% Similarity=0.069 Sum_probs=236.5
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN 123 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 123 (634)
+++..|...|+.||.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 67888999999999999999999999999999999 9999998888889999999999999999988776 788
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCChhhHHHHHHHH--------------hccCCcHHHHHH
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIR-MLR-------SDTEPNEFTFATVLTSC--------------AGAFGFELGKQI 181 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~--------------~~~~~~~~a~~~ 181 (634)
..+|+.|..+|.++|+... ++.-++ |.. .|+..-..-|-..+.+| ...|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 222222 221 22221111121111221 112233333333
Q ss_pred HHHHHHhCCCCchHHHHHH--HHHHHh-cCCHHHHHHHHccCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q 006705 182 HSLIIKSNFESHIYVGSSL--LDMYAK-AGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257 (634)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~l--i~~y~~-~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (634)
+..+ +......... ++-... ...+++-........ .++..++.+++..-..+|+.+.|..++.+|++.|++
T Consensus 162 l~~~-----Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 162 LAKV-----PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HhhC-----CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3211 1000000000 110000 011222222222222 245555666666555666666666666666666655
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----------------------------
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG---------------------------- 309 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---------------------------- 309 (634)
.+..-|-.++-+ .++......+..-|...|+.|+..|+.-.+-...+.|
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 555555555433 4555555555555555555555555544333333322
Q ss_pred ------------------------------------------CHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcC
Q 006705 310 ------------------------------------------SLTYSRRVFDNMSER-------TVISWNAMLVGYSKHG 340 (634)
Q Consensus 310 ------------------------------------------~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g 340 (634)
.-+..+++-..+..| ++..|..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------ 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------ 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------
Confidence 222222222222111 2222222222
Q ss_pred ChHHHHHHHHHHHHcC----------------------------CCCCCHH----------------------------H
Q 006705 341 MGREVVELFNLMREEN----------------------------KVKPDSV----------------------------T 364 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~~----------------------------g~~pd~~----------------------------t 364 (634)
+.|.+..... ...||.. .
T Consensus 388 ------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 388 ------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222222110 0112211 0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-----FEPTAAILGSLLG 439 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~ 439 (634)
-+.++-.|...-+..+++..-+..... - -...|..||+.+....+.++|..+.++.. +.-|..-+..+..
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~--l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL--L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 111222222222222332222111110 1 12468889999999999999999998873 2234445667777
Q ss_pred HHHhcCCchHHHHHHHHHhc---cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006705 440 ACRVHYNVDIGEFVGQRLME---IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWI 505 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 505 (634)
...+++....+..+.+...+ ..|........+.+..+..|..+...++++-+...|+.. .+.-|.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 77888877777777666554 223223445567777788899999999999998888765 444553
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.9e-09 Score=108.46 Aligned_cols=414 Identities=11% Similarity=0.084 Sum_probs=199.7
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---C
Q 006705 48 EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRP--PVYLRTRLIVFYNKCECLSDARKMFDEMRE---R 122 (634)
Q Consensus 48 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~ 122 (634)
.+...|+..|...|..=..+|-..|.+-.+..+....+..|+.. ...+|+.-.+.+.+.+.++-|+.+|....+ .
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 34445555555555555555555555555555555555554322 123444445555555555555555544433 2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|......=-..|..++-..+|++....- +-....|....+..-..||+..|+.++.++.+.. +.+..+|-+-+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33344444444444455555555555554431 1122222222333334455555555555554443 224444444455
Q ss_pred HHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK 280 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 280 (634)
.-....+++.|+.+|.+... ++...|.--+..---.++.++|++++++..+. -|+
T Consensus 627 le~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~--------------------- 683 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD--------------------- 683 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc---------------------
Confidence 55555555555555544322 23333433333333344445555555444432 233
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006705 281 QVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENK 357 (634)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 357 (634)
-...|-.+...+-+.++++.|++.|..-.+ | .+..|-.+...--+.|+..+|..+|++.+..
T Consensus 684 -------------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-- 748 (913)
T KOG0495|consen 684 -------------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-- 748 (913)
T ss_pred -------------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--
Confidence 333444444445555555555554443332 2 2334444444444444555555555554443
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 437 (634)
-+-|...|...+..-.+.|+.+.|..+.....+ ..+.+...|..-|-+..+.++-..+.+-+++.. .|..+.-++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ---ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllai 823 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQ---ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAI 823 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHH
Confidence 223344455555555555555555555544443 233344455555555555555444444444443 233344444
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEEC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELD 508 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 508 (634)
...+.....++.|..-|.++.+.+|++..+|.-+-..+.+.|.-++-.++++..... .|..|..|..+.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 445555556666666666666666666666666666666666666666666655443 344455665444
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=2.6e-09 Score=107.48 Aligned_cols=419 Identities=12% Similarity=0.045 Sum_probs=319.4
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-- 121 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 121 (634)
++++.-.+. -|+++. |=++.....+.+.|+-++...++.- +.+...| -+|++..-++.|.+++++..+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555443 355443 2334445566777888888888763 3444444 445566678899999988765
Q ss_pred -CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc--h
Q 006705 122 -RNVVSWTAMISAYSQKAHSFEALNLFIR----MLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH--I 194 (634)
Q Consensus 122 -~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 194 (634)
.+...|-+-...=-.+|+.+....++.+ +...|+..+...|..=..+|-..|..-.+..+...++..|++.. -
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4777888777777788998888887765 45568888999998888889999999999999999988887653 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHh
Q 006705 195 YVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS 271 (634)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 271 (634)
.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... ++-....|.......-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 6788888899999999999999876654 46678888777777788889999999999876 3334445555556666
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..|+...|+.++..+.+.. +.+..+|-+-+..-.....++.|+.+|.+... +....|.--+...--.+..++|++++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 7799999999999998876 44778888888889999999999999998764 56777877777777788899999999
Q ss_pred HHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 006705 350 NLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--P 426 (634)
Q Consensus 350 ~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 426 (634)
++..+. -|+- ..|..+.+.+-+.++++.|...|..-.+ ..+..+..|-.|...=-+.|.+-.|..++++. .
T Consensus 675 Ee~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 675 EEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 888875 3554 6677777888888999999888877664 34456678888888888999999999999886 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.+.+...|-..|..-.+.|+.++|+.++.++++--|++...|..-|.+..+.++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 456788899999999999999999998888887777665555444444444443
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=2.3e-11 Score=124.86 Aligned_cols=284 Identities=11% Similarity=-0.013 Sum_probs=139.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV--GSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~ 214 (634)
.|+++.|.+.+.......-.| ...|.....+....|+++.+.+.+..+.+. .|+... .......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666544431111 122333334446677777777777777654 333322 223356777777777777
Q ss_pred HHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 215 GVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 215 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 77776654 24556677777777788888888888887776543222 1110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
..+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+.+++..+. .||... .+
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~ 300 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VL 300 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HH
Confidence 0011111111122223333333333331 23444444455555555555555555444432 222211 11
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCc
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+.+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|++. ...|+...+..+...+...|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 22222334555555555554432 1223444445555555555555555555544 3345555545555555555555
Q ss_pred hHHHHHHHHHhc
Q 006705 448 DIGEFVGQRLME 459 (634)
Q Consensus 448 ~~a~~~~~~~~~ 459 (634)
++|..++++.+.
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=4.7e-09 Score=109.85 Aligned_cols=354 Identities=12% Similarity=0.126 Sum_probs=266.7
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhc---CCCCcchHHHHHHHHHhCCChhH
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEM---RERNVVSWTAMISAYSQKAHSFE 142 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 142 (634)
+.....|+++.|..++.++++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+-.-..+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344599999999999999986 556778999999999999999998876443 34577889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHH----HHHHHHHhcCCHHHHHHHHc
Q 006705 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGS----SLLDMYAKAGRIHEARGVFE 218 (634)
Q Consensus 143 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~ 218 (634)
|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998863 3344444455667889999999999999998875333332222 24556677788888988888
Q ss_pred cCCC--C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc----------------------ChhhHH----HHH
Q 006705 219 CLPE--R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS----------------------NYVTYA----SVL 267 (634)
Q Consensus 219 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------~~~t~~----~ll 267 (634)
.... . +...+|.++..|.+...++.|......+......+ +...|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7654 2 34568899999999999999999988887621111 111111 223
Q ss_pred HHHhcccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCC
Q 006705 268 TALSGLAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE----RTVISWNAMLVGYSKHGM 341 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~ 341 (634)
-++.+....+....+.....+.. ...++..+.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34456666666777777777776 445677889999999999999999999999874 367799999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhc------cCCccCChHHHHHHHHHHHHcCC
Q 006705 342 GREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDC------KDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
+++|++.|+..... .|+. ..-.+|-+.+.+.|+.++|.+.+..+..- ..+..|+........+.|...|+
T Consensus 465 ~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999875 4544 45556666788999999999999885421 00345666667777888999999
Q ss_pred HHHHHHHHHh
Q 006705 415 VGEALEFIKN 424 (634)
Q Consensus 415 ~~~A~~~~~~ 424 (634)
.++=.+.-..
T Consensus 542 ~E~fi~t~~~ 551 (895)
T KOG2076|consen 542 REEFINTAST 551 (895)
T ss_pred HHHHHHHHHH
Confidence 8875544433
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=1.4e-10 Score=119.68 Aligned_cols=288 Identities=11% Similarity=-0.018 Sum_probs=159.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEF-TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467788888877766553 34322 233344556667788888888777765432222234444566777777888777
Q ss_pred HHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 006705 215 GVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI 291 (634)
Q Consensus 215 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 291 (634)
..++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 77777654 255566677777777888888888877777765332221111111111
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHH---
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY--- 365 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~--- 365 (634)
..+++.-......+...+.++..+. .+...+..+...+...|+.++|.+.+++..+. .||....
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~ 302 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLP 302 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhH
Confidence 0011111111122333334444432 25556666666666666666666666666654 2333210
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh--HHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI--EHYGCVVDMLGRAGRVGEALEFIKN---MPFEPTAAILGSLLGA 440 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~ 440 (634)
..........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+. ....|+...+..+...
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~---p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNV---DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 111111233455666666666665432 2222 4455666666677777777777762 2445666666666666
Q ss_pred HHhcCCchHHHHHHHHHhc
Q 006705 441 CRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~ 459 (634)
+.+.|+.++|..++++.+.
T Consensus 380 l~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777666666543
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.4e-10 Score=119.06 Aligned_cols=275 Identities=8% Similarity=0.034 Sum_probs=201.0
Q ss_pred cCCHHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHH--HHHHHHhcccchHHHHH
Q 006705 207 AGRIHEARGVFECLPER--DV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA--SVLTALSGLAALGHGKQ 281 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 281 (634)
.|+++.|++.+...++. ++ ..|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888777765542 22 23322333446788888888888888763 45544333 22456677888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHH
Q 006705 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV-----------ISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 56677888888888888888888888888774321 133444444445555667777777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP 429 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 429 (634)
...+. .+.+......+..++...|+.++|..+++...+. +|+.... ++.+....++.+++.+..++. ...|
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77654 4557788888999999999999999999998853 4555322 222333559999999999886 3344
Q ss_pred C-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 430 T-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 430 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+ .....++...|...++++.|...++++.+..|++ ..|..|..++.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 5567788899999999999999999999999984 6788999999999999999999987643
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1e-12 Score=128.82 Aligned_cols=254 Identities=16% Similarity=0.152 Sum_probs=81.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT-VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
...+.+.|++++|+++++.......+|+...|-. +...+-..++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455566666666666644433321333333333 3333445566666666666666554 2244455555555 56667
Q ss_pred HHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccChhhHHHHHHHHhcccchHHHHHHHHHH
Q 006705 210 IHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYVTYASVLTALSGLAALGHGKQVHSHV 286 (634)
Q Consensus 210 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 286 (634)
+++|.+++...-+ ++...+..++..+.+.++++++.++++...... .+++...|......+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666655422 345556666666777777777777777665432 2334445555556666666777777777666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..+. .+.|..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 6654 3355666666666666676666555554443 245566666777777777777777777776664 234556
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+...+..++...|+.++|.++...+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66666677777777777776666554
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=7.9e-10 Score=114.21 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=133.4
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHH----HHHHHHHhcCCh
Q 006705 270 LSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWN----AMLVGYSKHGMG 342 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~ 342 (634)
+...|+++.|...++.+.+.. |.+..+...+...|.+.|++++|.+.+..+.+. +...+. ....++...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433 233344444444455555555555444444421 111111 111112223333
Q ss_pred HHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH-HHHHHHHH--HHcCCHHH
Q 006705 343 REVVELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH-YGCVVDML--GRAGRVGE 417 (634)
Q Consensus 343 ~~A~~~~~~m~~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~ 417 (634)
+++.+.+..+.+.. ..+.+...+..+...+...|+.++|..+++...+. .|+... ...++..+ ...++.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~----~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK----LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCcccchhHHHHHhhhcCCCChHH
Confidence 33444555555430 01237788888889999999999999999999975 343331 11133333 33578888
Q ss_pred HHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCchHHHHHHH--HHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 418 ALEFIKNM-PFEPTA---AILGSLLGACRVHYNVDIGEFVGQ--RLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 418 A~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+.+.+++. ...|+. ....++...|.+.|++++|...++ ...+..|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888775 333443 556788899999999999999999 577788874 56779999999999999999999986
Q ss_pred h
Q 006705 492 K 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 4
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.1e-08 Score=99.34 Aligned_cols=390 Identities=14% Similarity=0.127 Sum_probs=261.5
Q ss_pred HcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 006705 104 NKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180 (634)
Q Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (634)
-..+++..|+.+|+.... ++...|--.+..=.++.+...|..++++....=...|.. |.--+..--..|++..|++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 345667777777776654 566667777777777777777888877776532222222 2222333345678888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL--PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+|+.-.+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--...-=-++|+..-|..+|....+. -.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 8887765 4788888888888888888888888888764 3578888877777777788888888888776653 12
Q ss_pred ChhhHHHHHHHH----hcccchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC
Q 006705 259 NYVTYASVLTAL----SGLAALGHGKQVHSHVLRFEIPSY--VVLQNSLIDMYSKCGSLTYSRRV--------FDNMSER 324 (634)
Q Consensus 259 ~~~t~~~ll~~~----~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------f~~m~~~ 324 (634)
|...-..+..++ .....++.|.-++...++.= +.+ ...|..+...--+-|+......+ ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 233223333333 34566777888888777652 333 44555555555556664433332 2222222
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHH---hccCcHHHHHHHHHHhhhc
Q 006705 325 ---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-------TYLAVLSGC---SHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 325 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 391 (634)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 5567777777777778888888888888874 676331 121111122 346778888888888875
Q ss_pred cCCccCChHHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 392 KDGFEPEIEHYGCVVDMLG----RAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 392 ~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
-++....++..+=-+|+ |+.++..|.+++... +.-|-..++...|..-.+.++++....++++.++..|.+..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 34555666666555554 678888888888765 66678888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeE
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 504 (634)
++.-.+..=...|+++.|..+|....++.....|..-|
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888888888888888888888887765443444444
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4e-09 Score=104.84 Aligned_cols=257 Identities=11% Similarity=0.031 Sum_probs=206.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
.-.-..-+-..+++.+.++++....+.. ++....+..=|.++...|+..+-..+=..+++. .|..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3344455677899999999999988753 556666666677778888877777666667665 36778899999999999
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
.|+..+|++.|.+...- -...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 99999999999987643 3468999999999999999999999877664 222223334444568889999999999
Q ss_pred HHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 385 FHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNMP--------FEP-TAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 385 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
|.+.. ++-| |+.+.+-+.-.....+.+.+|..+|+..- ..+ -..+|+.|..+|++.+.+++|...+
T Consensus 403 f~~A~----ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 403 FKQAL----AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHH----hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99998 5555 67788888888888899999999998751 111 3446788889999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
++++.+.|.++.+|.+++-+|...|+++.|...|.+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.9e-10 Score=116.43 Aligned_cols=275 Identities=10% Similarity=0.046 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE------RDVVSCTAIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 248 (634)
..+|...|...... ...+..+..-+..+|...+++++|+++|+.+.. .+...|.+.+--+.+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34555555553332 233335555666666666777777777666543 244455555533221 1222222
Q ss_pred HH-HhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 006705 249 RK-LQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI 327 (634)
Q Consensus 249 ~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 327 (634)
.+ +... -+-.+.||..+-++|+-.++.+.|...|.+.++.+ +.....|+.+..-+.....+|.|...|+.....|..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22 2211 12222334333333333333333333333333322 113334444444444444445555555544444443
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVV 406 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li 406 (634)
.||+ |..+...|.+.++++.|+-.|+.+.+ +.| +.....++.
T Consensus 488 hYnA---------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g 530 (638)
T KOG1126|consen 488 HYNA---------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIG 530 (638)
T ss_pred hhHH---------------------------------HHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhh
Confidence 3333 33333334444444444444444442 222 233333344
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 407 DMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
..+-+.|+.|+|++++++. .. +.|+..----...+...+++++|...++++.++-|++...|..++.+|-+.|+.+.|
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 4444444444444444443 11 112222222233334445555555555555555555555555556666655655555
Q ss_pred HHHHHHHhh
Q 006705 485 TRVRELMKE 493 (634)
Q Consensus 485 ~~~~~~m~~ 493 (634)
..-|.-+.+
T Consensus 611 l~~f~~A~~ 619 (638)
T KOG1126|consen 611 LLHFSWALD 619 (638)
T ss_pred HHhhHHHhc
Confidence 555555543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8e-09 Score=100.17 Aligned_cols=247 Identities=11% Similarity=0.109 Sum_probs=125.4
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCh
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER------DVVSCTAIISGYAQLGLD 241 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~ 241 (634)
++-...+.+++.+-.......|++.....-+-...++-...+++.|+.+|+++... |..+|+.++ |+++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 34444455555555555666666555555554445555556666666666666542 333444443 2232221
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
. +..+.+-...--+--..|...+.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|..-++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1122111111111122344444455555555556666666555554 334455555555555555555555555544
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 322 SE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 322 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
.+ +|-..|-.+.++|.-.+.+.-|+-.|++..+. -+-|+..+.+|..+|.+.+++++|..-|...... -..+
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~---~dte 465 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL---GDTE 465 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc---cccc
Confidence 42 34455555555565555555555555555543 2223455555555555566666665555555542 1234
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
...+..|.++|-+.++.++|...|.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555555555555555555555544
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.2e-09 Score=102.71 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=170.3
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVEL 348 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 348 (634)
-.|+.-.+.+-+..+++....++ ..|--+..+|....+.++..+.|++... .|..+|-.-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35778888888888888763333 3355566679999999999999998763 3667777777777788899999999
Q ss_pred HHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 349 FNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 349 ~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
|++.... .|+ ...|..+--+..+.+.++++...|++..+ .++..+++|+.....+...++++.|.+.|+.. .
T Consensus 417 F~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9998864 454 46777777777788999999999999997 56778899999999999999999999999875 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 FEPT---------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.+|+ ..+-.+++-.-.+ +++..|..+..++.+++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444 2222333322223 889999999999999999988999999999999999999999999764
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=6.8e-08 Score=93.97 Aligned_cols=374 Identities=12% Similarity=0.091 Sum_probs=232.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYS 135 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 135 (634)
...|...+..=.+...+..|+.+++..+..- +.-...|-..+.|=-..|++.-|+++|+.-.+ |+...|++.|.-=.
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3334444455556666777777777776542 21222344445555556778888888876543 88888888888888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh-CC-CCchHHHHHHHHHHHhcCCHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-NF-ESHIYVGSSLLDMYAKAGRIHEA 213 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A 213 (634)
+-...+.|..+|++.+- +.|+..+|.-....--+.|+...+++++..+++. |- ..+...+++....=.++..++.|
T Consensus 186 RykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 4688888877777777888888888888877664 11 11223444444444456666666
Q ss_pred HHHHc----cCCCC-------------------------------------------ChhhHHHHHHHHHhcCChHHHHH
Q 006705 214 RGVFE----CLPER-------------------------------------------DVVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 214 ~~~~~----~m~~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~ 246 (634)
.-+|. .++.. |-.+|--.+..--..|+.+...+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 65553 22211 22345555555555677777777
Q ss_pred HHHHHhhcCCccCh-------hhHHHHHHHH---hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH----hcCCHH
Q 006705 247 LFRKLQVEGMISNY-------VTYASVLTAL---SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS----KCGSLT 312 (634)
Q Consensus 247 ~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 312 (634)
+|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ =+|....++.-+=-+|+ ++.++.
T Consensus 344 ~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 344 TYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccH
Confidence 77777654 44422 1111111111 234567777777777766 24445555555444443 466777
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 313 YSRRVFDNMS--ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 313 ~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.|++++.... .|-.-++...|..-.+.++++....+|++..+- -+-|..++......=...|+.+.|..+|.-.+.
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 7777777665 355566666677777777777777777777764 233446666666666667777777777777775
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLG 439 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 439 (634)
.. .+..-...|.+.|+.=..+|.++.|..+++++ ...+...+|-++..
T Consensus 500 qp-~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 500 QP-ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred Cc-ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 42 34444556677777777777777777777775 22345556766653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.7e-10 Score=116.68 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHH-HHHHH
Q 006705 241 DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE--IPSYVVLQNSLIDMYSKCGSLT-YSRRV 317 (634)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~-~A~~~ 317 (634)
..+|+..|...... +.-.......+-.+|-..+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+. .|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555553322 22222344445555666666666666666555542 1234455555443322211111 12233
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 318 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
.+ +....+.+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ .
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------~ 483 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------G 483 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh------c
Confidence 33 2234678999999999999999999999999886 456 56788888777888899999999999876 3
Q ss_pred CChHHHHH---HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 397 PEIEHYGC---VVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 397 p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.++.+|++ |.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|..+++++.-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 46666665 566789999999999999987 55564 55566677888999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.++...+++++|.+.++++++-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.8e-09 Score=99.93 Aligned_cols=270 Identities=15% Similarity=0.136 Sum_probs=166.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCC--chHHHHHHHHHHHhcCCHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN-FES--HIYVGSSLLDMYAKAGRIHEA 213 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A 213 (634)
+.++++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|.++|..+.++- ++- -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998742 2233455667777888999999999998887642 111 123455677888899999999
Q ss_pred HHHHccCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 214 RGVFECLPERDV---VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 214 ~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
+.+|..+.+.+. .+.-.|+..|.+..+|++|++.-+++.+.+-.+..+-. ..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HH----------------------
Confidence 999998876433 35566888899999999999998888876544433211 11
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ 367 (634)
.|.-|...+....+++.|..++.+..+ +.+..--.+...+...|++..|++.++...+. +..--..+...
T Consensus 182 ------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~ 254 (389)
T COG2956 182 ------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEM 254 (389)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence 122233333344455555555555442 12333333445566677777777777777665 22222345566
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI-KNMPFEPTAAILGSLLGACRV 443 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~ 443 (634)
|..+|.+.|+.+++..++..+.+.+ ++...-..|.+.-....-.+.|...+ +++.-+|+...+..|+..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~----~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN----TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc----CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 6667777777777777777766542 23333333333333333344444433 344556777777777765443
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=5.1e-09 Score=100.84 Aligned_cols=394 Identities=9% Similarity=0.059 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC----CCcch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh----HH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE----RNVVS-WTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT----FA 163 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~ 163 (634)
-.+...|..-|.-.....+|+..++-+.+ ||.-. --.+-..+.+...+.+|+.+|+..+..-...+..+ .+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33444566667766777888888877654 33322 12244567888899999999988776532233333 33
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----------------CChhh
Q 006705 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----------------RDVVS 227 (634)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~ 227 (634)
.+--.+.+.|+++.|..-|+...+. .|+..+.-.|+-++..-|+-++..+.|.+|.. |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3334567899999999999998876 57776666677777788999999999988752 22222
Q ss_pred HHH-----HHHHHHhcC--ChHHHHHHHHHHhhcCCccChhh-----HHH----------------HHHHHhcccchHHH
Q 006705 228 CTA-----IISGYAQLG--LDEEAIELFRKLQVEGMISNYVT-----YAS----------------VLTALSGLAALGHG 279 (634)
Q Consensus 228 ~~~-----li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-----~~~----------------ll~~~~~~~~~~~a 279 (634)
.|. ++.-.-+.+ +.++++-.-.++..--+.||... ..+ -...+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 222 222222211 12222222222222223333210 000 01235678899999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHhhcCC
Q 006705 280 KQVHSHVLRFEIPSYVVLQNSLIDMY------------------------------------SKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~li~~~------------------------------------~~~g~~~~A~~~f~~m~~ 323 (634)
.+++....+..-..-....|.|--.+ ...|++++|.+.+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99988776654322222222111111 224677888888887777
Q ss_pred CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 324 RTVISWNAMLV---GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 324 ~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
.|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++..... -++.|+.
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ 593 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPA 593 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHH
Confidence 66655444433 366788999999999877653 344667777888888888999999999888764 5677899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHH-HHHHHHhh
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-ILSNLYAS 477 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~ 477 (634)
+.+.|.+.|-+.|+-..|.+..-.- . ++-+..+..-|...|....-.+.+...++++.-+.|.. .-|. .+..++.+
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rr 672 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 9999999999999999999875443 2 23355555555666666667889999999999999985 4455 45566678
Q ss_pred cCCcHHHHHHHHHHhhC
Q 006705 478 AGRWEDVTRVRELMKEK 494 (634)
Q Consensus 478 ~g~~~~A~~~~~~m~~~ 494 (634)
.|++..|..+++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999998654
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.1e-08 Score=96.17 Aligned_cols=288 Identities=12% Similarity=0.113 Sum_probs=214.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCC
Q 006705 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 209 (634)
.+|-...+.++++.-.......|+.-+...-+....+.-...|+++|..+|+.+.+... -.|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555557778888888887777655544444444555677899999999999998741 1256677666543332222
Q ss_pred HH-HHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 210 IH-EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 210 ~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+. -|..+++ +.+=-+.|...+.+-|.-.++.++|...|++..+.+ |. ...|+.+-.-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 22 2333332 222234567777888888999999999999998753 44 4567777788999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT 364 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t 364 (634)
+.+ |.|-..|-.|.++|.-.+...-|.-.|++..+ .|...|.+|...|.+.++.++|++.|.+.... | ..+...
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHH
Confidence 987 67888999999999999999999999998763 48999999999999999999999999999886 3 346688
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhcc--CC-ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCK--DG-FEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
+..|...+-+.++..+|.+.|..-++.. .| +.| .....--|..-+.+.+++++|...-...
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999999988776531 02 223 2233333566677888888887655443
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=5.4e-12 Score=86.91 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 122 RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.1e-11 Score=85.40 Aligned_cols=50 Identities=34% Similarity=0.655 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
||+++||++|.+|++.|++++|.++|++|.+. |++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999 999999999999999875
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1e-09 Score=104.36 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=162.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+. .+.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3456677788889999999999999987653 35677888888999999999999999998875 234556777788
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 447 (634)
..+...|++++|...++...+.. ........+..+...+.+.|++++|.+.+.+. ...| +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 88899999999999999998642 22334567788888999999999999999886 2233 456788888899999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++|...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999988888888888899999999999999999888754
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1.1e-08 Score=97.87 Aligned_cols=285 Identities=12% Similarity=0.051 Sum_probs=182.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
.|++..|.++..+-.+.+-.| ...|.....+.-..||.+.+-+++.++-+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688888888888876665443 3445556667778888888888888887764466777777788888888888888776
Q ss_pred HccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 006705 217 FECL---PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 217 ~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 293 (634)
.++. ..+++........+|.+.|++.+...++..|.+.|+--|+..-. +
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------
Confidence 6654 44677788888889999999999999999998887654432110 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+. +..|+. ..+-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHH
Confidence 011222333322222223333334444442 23444455566666666667777666666665 455552 2223
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 371 a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.+.+.++.+.-.+..+.-.+.+ + -++..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++...|+.+.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-P--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-C--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 4555666666666666555533 2 23356666777777777777777777654 556777777777777777777777
Q ss_pred HHHHHHHHh
Q 006705 450 GEFVGQRLM 458 (634)
Q Consensus 450 a~~~~~~~~ 458 (634)
|..+.++.+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 776666655
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=4.2e-10 Score=116.84 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=190.8
Q ss_pred HHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 006705 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325 (634)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 325 (634)
.++..|...|+.||.+||..+|.-|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999998888999999999999999999987775 788
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
..+|+.+..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-.. +.-||.. ..
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p-~~lpda~---n~ 145 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCP-HSLPDAE---NA 145 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCc-ccchhHH---HH
Confidence 8999999999999999865 333322 12233445556666555555555543221 4455544 34
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
+....-.|.++.++++...+|...-......++.-+.... .++.-........+ .|+ +.+|..+...-..+|+.+-|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhH
Confidence 5556677888999999988864211111111344443332 23333333444444 454 78999999999999999999
Q ss_pred HHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccc
Q 006705 485 TRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFKEAGYVPDMSCVL 551 (634)
Q Consensus 485 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 551 (634)
..++..|+++|++..+.+.|-.+ .|..+-+ -++.+.+.|++.|+.|+.++..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl--------~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLL--------LGINAAQ-------VFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhh--------hcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999998888888643 2321211 2566788899999999997654
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.2e-08 Score=94.49 Aligned_cols=294 Identities=13% Similarity=0.145 Sum_probs=198.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC-CChh------hHHHHHHHHHhcCChHHHH
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE-RDVV------SCTAIISGYAQLGLDEEAI 245 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 245 (634)
.+.++|...|-.|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. +.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777888887777643 44455566777888888888888887776654 3322 3334556677777788888
Q ss_pred HHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 006705 246 ELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT 325 (634)
Q Consensus 246 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 325 (634)
.+|..+.+.|. .-......++..|....+|++|..+-..+.+.+-.+... -+..
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ---------------------- 181 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH----------------------
Confidence 88877776542 223344555556666666666666655555544222111 0111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
-|.-+...+....+.+.|..++.+..+. .|+. ..-..+.......|+++.|.+.++.+.+. +..--..+...
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~ 254 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEM 254 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 2333555566677899999999998875 3444 33344556688999999999999999986 44445678889
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH---hhcCC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY---ASAGR 480 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~ 480 (634)
|..+|...|+.++...++.++ ...+....-..+-.......-.+.|...+.+-+...|+ ...+..|++.. +.-|+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccc
Confidence 999999999999999998876 44555555555555555666677788888888888887 45566666664 34467
Q ss_pred cHHHHHHHHHHhhCCCccCCc
Q 006705 481 WEDVTRVRELMKEKAVTKDPG 501 (634)
Q Consensus 481 ~~~A~~~~~~m~~~~~~~~~~ 501 (634)
+.+..-.++.|....++..|.
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCC
Confidence 899999999998777766553
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.4e-07 Score=88.81 Aligned_cols=361 Identities=10% Similarity=0.025 Sum_probs=241.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCcchH-HHHHHHHHhCCC-h-h-------------HHHHHHHHHHHCC-----
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERNVVSW-TAMISAYSQKAH-S-F-------------EALNLFIRMLRSD----- 154 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~-~-~-------------~A~~~~~~m~~~g----- 154 (634)
-...+..|...++-++|...+.+.+..-...- |.|+.-+-+.|. . + -|++.+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 34456677777888888888887776333333 333333333221 1 1 1222222222222
Q ss_pred ----------CCCChhhHHHHHHHHhc--cCCcHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 155 ----------TEPNEFTFATVLTSCAG--AFGFELGKQIHSLIIKS-NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 155 ----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
+.|+..+....+.+++. .++-..+.+.+..+... -++.++....++.+.|...|+.++|+..|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 23444444555555443 34444455555444333 467788999999999999999999999999876
Q ss_pred CCChhhHHH---HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHH
Q 006705 222 ERDVVSCTA---IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQ 298 (634)
Q Consensus 222 ~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 298 (634)
.-|+.+... ....+.+.|+.++...+...+.... +-....|..-....-..++++.|..+-+..++.+ +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 544433222 2334567888888888877776532 1222223333333445667777887777777654 2333344
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHh-
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMS--ER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL-SGCS- 373 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll-~a~~- 373 (634)
-.-...+...|++++|.-.|+... .| +..+|.-++..|...|++.+|.-+-+...+. ++-+..+...+. ..|.
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeecc
Confidence 333455677899999999998765 33 7899999999999999999999888776664 444555655442 2332
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
....-++|..+++...+ +.|+ ....+.+...+...|+.++++.++++. ...||....+.|...++....+.+|.
T Consensus 416 dp~~rEKAKkf~ek~L~----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLK----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred CchhHHHHHHHHHhhhc----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 33345789999998874 4554 556677888899999999999999986 56789999999999999999999999
Q ss_pred HHHHHHhccCCCC
Q 006705 452 FVGQRLMEIEPEN 464 (634)
Q Consensus 452 ~~~~~~~~~~p~~ 464 (634)
..+..+++++|++
T Consensus 492 ~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 492 EYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHhcCccc
Confidence 9999999999987
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=6.5e-08 Score=92.62 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHH
Q 006705 207 AGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 283 (634)
.|++..|+++..+-.+ .-+..|-.-+.+--+.|+.+.+-.++.+..+..-.++...+.+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777765433 2334455555566677777777777777766422344444555555667777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-----------VISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 284 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
..+.+.+ +.++.+.......|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 5566677777888888888888888888777532 246777777777666666666677777
Q ss_pred HHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH--HHcCCHHHHHHHH----HhCC
Q 006705 353 REENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML--GRAGRVGEALEFI----KNMP 426 (634)
Q Consensus 353 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~----~~m~ 426 (634)
... .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ |...+ .+-++.+.-++.. +..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~--~~D~~------L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR--QWDPR------LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--ccChh------HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 664 5556666777888889999999999999999886 66666 22222 2445544433333 3334
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.. +..+.+|...|.+++.+.+|...++.++...|+ ..+|..+++++.+.|+..+|.+++++...
T Consensus 326 ~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 ED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44 478889999999999999999999999999998 68999999999999999999999998753
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.1e-08 Score=104.85 Aligned_cols=232 Identities=16% Similarity=0.150 Sum_probs=159.7
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHc-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRF-----EI-PSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-------R-- 324 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-- 324 (634)
.|...+...|...|+++.|..++...++. |. .|. ....+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666667777777777776665543 10 111 22233466677777887777777776642 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccC-Cc
Q 006705 325 --TVISWNAMLVGYSKHGMGREVVELFNLMREE----NKV-KPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-GF 395 (634)
Q Consensus 325 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g~-~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~ 395 (634)
-..+++.|..+|.+.|++++|...+++..+- .|. .|+. .-++.+...|...+.+++|..+++...+.+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346677777788888888777776655431 022 2333 3356666678999999999999988776531 12
Q ss_pred cC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhcc-
Q 006705 396 EP----EIEHYGCVVDMLGRAGRVGEALEFIKNM-------PF--EPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEI- 460 (634)
Q Consensus 396 ~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 460 (634)
.+ -..+++.|...|...|++++|.+++++. .. .+. ....+.|..+|.+.+++..|.+++.....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467999999999999999999999886 11 122 446677889999999999998888776643
Q ss_pred ---CCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 461 ---EPE---NAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 461 ---~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 34568899999999999999999999875
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=2.2e-08 Score=107.51 Aligned_cols=260 Identities=12% Similarity=-0.002 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCccChh-hHHHHHHHHh---------cccchHHHHHHHHHHHH
Q 006705 224 DVVSCTAIISGYAQ-----LGLDEEAIELFRKLQVEGMISNYV-TYASVLTALS---------GLAALGHGKQVHSHVLR 288 (634)
Q Consensus 224 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~i~~~~~~ 288 (634)
+..+|...+.+-.. .+..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 13467999999999875 55543 4444433332 23457899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HH
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VT 364 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t 364 (634)
.+ +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 86 56778888898999999999999999998764 4 4667888999999999999999999999875 4543 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAA-ILGSLLGAC 441 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~ 441 (634)
+..++..+...|++++|...++++.+. ..| ++..+..+...|...|+.++|.+.+.++ +..|+.. .++.+...+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 334444566689999999999998753 234 4556788889999999999999999987 4445544 445555666
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
...| +.+...++.+.+..-.....+..+...|.-.|+-+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 4666666666553222222223366677777887777776 7776654
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=3.4e-08 Score=93.78 Aligned_cols=193 Identities=14% Similarity=0.095 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 304 (634)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777888888888888888888877643 2234455556666666777777777776666654 2334455555555
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHH
Q 006705 305 YSKCGSLTYSRRVFDNMSER-----TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED 379 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 379 (634)
|...|++++|.+.|++.... ....|..+...+...|++++|...|++.... .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666554321 2234444455555555555555555555443 1222334444445555555555
Q ss_pred HHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 380 RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 380 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+|...++...+. .+.+...+..++..+.+.|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555432 122334444444555555555555554443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.6e-06 Score=84.66 Aligned_cols=434 Identities=13% Similarity=0.121 Sum_probs=252.1
Q ss_pred HHHhhhcCcHHHHHHHHHH-cCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--cC
Q 006705 33 LKTLCSNGQLTKALIEMAT-LGLEMR-FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR--LIVFYN--KC 106 (634)
Q Consensus 33 i~~~~~~~~~~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~ 106 (634)
++.+.++++..++.....+ .++.|| ...+..=+-+..+.+.+++|..+.+. .+. ..+++. +=.+|+ +.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 3444555566655543322 122243 44455555566777888888744332 221 112222 234444 67
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHH
Q 006705 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLI 185 (634)
Q Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 185 (634)
+..++|.+.++.....+..+...-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-+. ... ..+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHH
Confidence 899999999986555555566666677888999999999999997765432 11112222221111 111 012
Q ss_pred HHhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCh-----h-----hHHHHHHHHHhcCChHHH
Q 006705 186 IKSNFESH---IYVGSSLLDMYAKAGRIHEARGVFECL--------PERDV-----V-----SCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 186 ~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~~-----~-----~~~~li~~~~~~g~~~~A 244 (634)
......|+ ...|| ....+...|++.+|+++++.. .+.|. . .--.|...+...|+.++|
T Consensus 165 q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 22222221 22344 445667889999999998876 22111 1 122345567788999999
Q ss_pred HHHHHHHhhcCCccChhhHHH---HHHHHhcccchHHH--HHHHHH-----------HHHcCCCCchhHHHHHHHHHHhc
Q 006705 245 IELFRKLQVEGMISNYVTYAS---VLTALSGLAALGHG--KQVHSH-----------VLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 245 ~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a--~~i~~~-----------~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.+++....+.. ++|...... =|.+.....++..+ ...++. .....-......-+.|+.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998874 455533222 22333333332221 111110 110111112233345666654
Q ss_pred CCHHHHHHHHhhcCCCC-hhhHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 006705 309 GSLTYSRRVFDNMSERT-VISWNAMLVGYS--KHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 309 g~~~~A~~~f~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
+..+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .+-+ .......+.-....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55667777777666433 334445544432 233577888888877664 3223 24445555667889999999999
Q ss_pred HH--------HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCc
Q 006705 385 FH--------EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-----PFEPTAA----ILGSLLGACRVHYNV 447 (634)
Q Consensus 385 ~~--------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~----~~~~ll~~~~~~~~~ 447 (634)
+. .+.+ +.-.+.+-.+++.+|.+.+..+.|.+++.+. ...+... +|.-+...-.++|+.
T Consensus 399 l~~~~~~~~ss~~~----~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 399 LSLFLESWKSSILE----AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHhhhhhhhhhh----hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 98 4443 3334566778899999988877777776654 1112222 333344455678999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
++|...++++.+..|++......++.+|++. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999999986 456666654443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=8.2e-08 Score=103.19 Aligned_cols=145 Identities=9% Similarity=-0.075 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 251 (634)
+++|...++++++.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455556665555543 33445555555555556666666666655432 2 2344555555556666666666666665
Q ss_pred hhcCCccChh-hHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 252 QVEGMISNYV-TYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 252 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
.+. .|+.. .+...+..+...|++++|...+..+.+...+.++..+..+...|...|+.++|...+.++.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 543 23221 1122222333345555555555554443322233334444444555555555555554443
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=1.2e-06 Score=90.66 Aligned_cols=398 Identities=13% Similarity=0.078 Sum_probs=255.5
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HH
Q 006705 88 CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT-FA 163 (634)
Q Consensus 88 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 163 (634)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+++.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998764 3556799999999999999999999988765443354333 33
Q ss_pred HHHHHHh-ccCCcHHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHccCCC-----
Q 006705 164 TVLTSCA-GAFGFELGKQIHSLIIKS--NF--ESHIYVGSSLLDMYAKA-----------GRIHEARGVFECLPE----- 222 (634)
Q Consensus 164 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~----- 222 (634)
..-..|. +.+..+++..+-.+++.. +. ......|-.+.-+|... ....++.+.+++..+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333343 456677777776666652 11 11223333344444322 112345555655432
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
|++..|- .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|..+.+.....- +.|-.....-+
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 3344333 33467788899999999999887656677778888788888899999999888766531 11111111111
Q ss_pred HHHHhcCCHHHHHHH--------------------------HhhcC----C-CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 303 DMYSKCGSLTYSRRV--------------------------FDNMS----E-RTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~--------------------------f~~m~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
..-...++.++|... +..+. + .+...-..-+.+... -+...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-
Confidence 111123333333222 21111 0 121211111222211 11111100000
Q ss_pred HHHcCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 352 MREENKVKPDS--------VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 352 m~~~~g~~pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
|... -+.|.. ..+......+...+..++|..-+.+..+ ...-....|......+...|.+++|.+.|.
T Consensus 633 Lp~s-~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 LPSS-TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cCcc-cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 2211 122222 2234455567888888999877777764 234467778888888999999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 424 NM-PFEPT-AAILGSLLGACRVHYNVDIGEF--VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 424 ~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.. ...|+ +.+..++...+...|+...+.. +...+.+++|.++..|..|+.++-+.|+.++|.+.|....+-
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 76 44554 5678889999999999998888 999999999999999999999999999999999999988654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.8e-07 Score=93.36 Aligned_cols=278 Identities=11% Similarity=0.032 Sum_probs=148.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
..-+-..+++.+..++++...+.. ++....+..=|.++...|+..+-.-+=..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 344555667777777777766542 334444444444555666655544444444443 355566676676666666777
Q ss_pred HHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 211 HEARGVFECLPERD---VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 211 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+---|.+.+++..|.+++.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777776544322 346777777777777777777766655432 11111112222333455666666666666655
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA 367 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ 367 (634)
... |.|+.+.+-+.-+....+.+.+|...|+....+ .+....+ ..--..+++.
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e--~~~w~p~~~N 460 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE--KIFWEPTLNN 460 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc--ccchhHHHHh
Confidence 543 455555555555555555555665555543210 0000000 0012234555
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGAC 441 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 441 (634)
|..+|.+.+.+++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .+.||..+-..++..+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 55566666666666666666554 22345556666666666666666666666554 4455555555555433
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=6.5e-08 Score=99.24 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=79.2
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHh-----CC-CCch-HHHHHHHHHHHhcCCHHHHHHHHccCCC----------
Q 006705 160 FTFATVLTSCAGAFGFELGKQIHSLIIKS-----NF-ESHI-YVGSSLLDMYAKAGRIHEARGVFECLPE---------- 222 (634)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~---------- 222 (634)
.|+..+...|...|+++.|.+++.+.++. |. .|.+ ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666677777777777777666554 10 1111 1223355566666666666666655431
Q ss_pred C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc-----CC-ccChh-hHHHHHHHHhcccchHHHHHHHHHHHHc---CC
Q 006705 223 R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVE-----GM-ISNYV-TYASVLTALSGLAALGHGKQVHSHVLRF---EI 291 (634)
Q Consensus 223 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~---~~ 291 (634)
| -..+++.|...|.+.|++++|...+++..+- |. .|... -++.+...|...+.+++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1234555556666666666665555544321 11 11111 2344444555555555555555543321 00
Q ss_pred C----CchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 292 P----SYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 292 ~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
. .-..+++.|...|.+.|++++|+++|++.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1 11234444555555555555555554443
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.8e-06 Score=81.85 Aligned_cols=218 Identities=9% Similarity=0.003 Sum_probs=174.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 006705 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS 314 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 314 (634)
+.-.|+...|...|+........++. .|.-+-..|....+.++....|....+.+ +-|+.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34568889999999999876533333 27777788899999999999999999887 56788888888899999999999
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 315 RRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 315 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
..-|++...- ++..|-.+-.+..+.+++++++..|++..+. ++--...|+.....+...+++++|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998753 5677777777888899999999999999986 6556678888889999999999999999998853
Q ss_pred cCCccCC---------hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 392 KDGFEPE---------IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 392 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
+|+ +-+-.+++..-.+ +++..|.+++++. .+.| ....+.+|...-.+.|+.++|..+|++...+
T Consensus 492 ----E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 ----EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ----ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 443 2223333333333 8999999999987 4333 4567889999999999999999999987765
Q ss_pred C
Q 006705 461 E 461 (634)
Q Consensus 461 ~ 461 (634)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 3
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.5e-06 Score=80.31 Aligned_cols=410 Identities=12% Similarity=0.063 Sum_probs=225.0
Q ss_pred hccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHH
Q 006705 69 VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALN 145 (634)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 145 (634)
...+|+..|..+++.-...+-.....+---+...|...|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455666666665554333211112222233455566777777777765443 444556556555555666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--C
Q 006705 146 LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--R 223 (634)
Q Consensus 146 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~ 223 (634)
+-....+ +...-..++...-+.++-++-..+|..+...- .-.-+|.++..-.-.+.+|++++.++.. |
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 5443211 22223334444455666666666666554321 2223344444444566777777776654 3
Q ss_pred ChhhHHH-HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc----c------------------------
Q 006705 224 DVVSCTA-IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL----A------------------------ 274 (634)
Q Consensus 224 ~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~------------------------ 274 (634)
+-...|. |.-+|.+..-++-+.+++.--.++ .||. |+..-+.+|..- |
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 3334443 333455666666666666655543 2332 222222333211 1
Q ss_pred ---------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC----
Q 006705 275 ---------ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGM---- 341 (634)
Q Consensus 275 ---------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---- 341 (634)
+-+.|.+++--+++. - +..--.|+-.|.+.+++++|..+.+++....+.-|-.-.-.++..|+
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 111222222211111 1 11223456668999999999999988875544444322223334442
Q ss_pred ---hHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 342 ---GREVVELFNLMREENKVKPDSVT-YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 342 ---~~~A~~~~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
..-|.+.|+-.-.. +..-|... -.++.+++.-...+++.+-+++.+.. -+..|...--.+..+++..|.+.+
T Consensus 336 reHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s---YF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES---YFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchhhhHHHHHHHHhcChHH
Confidence 34466666555444 44433321 23344445555678888888888875 233343333457899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHhccC-CCC-CchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 418 ALEFIKNMP--FEPTAAILGSLL-GACRVHYNVDIGEFVGQRLMEIE-PEN-AGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 418 A~~~~~~m~--~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|.++|-++. .-.|..+|.+++ .+|...+..+.|..++ ++.+ |.+ ......+.+-|.+++.+=-|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998873 224677887777 5566777888776554 3333 222 2334467788999999999999999887
Q ss_pred hCCCccCCceeEE
Q 006705 493 EKAVTKDPGRSWI 505 (634)
Q Consensus 493 ~~~~~~~~~~s~~ 505 (634)
..+.. | -.|-
T Consensus 489 ~lDP~--p-EnWe 498 (557)
T KOG3785|consen 489 ILDPT--P-ENWE 498 (557)
T ss_pred ccCCC--c-cccC
Confidence 65433 3 2575
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.8e-08 Score=93.36 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
+|-.|-..|.+..+++.|..+|.+-.+ | |+....-+...+-..++.++|.++|+...+. .+.+......+...|.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYF 335 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccc
Confidence 333344445555555555555554442 2 2222333445555566777777777777664 3344455556666666
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCch
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM---PFEPT--AAILGSLLGACRVHYNVD 448 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~ 448 (634)
-.++++-|+.+++.+... |+. +++.|+.+.-.|.-.+++|-++.-|.+. ...|+ ..+|..+.......||..
T Consensus 336 Y~~~PE~AlryYRRiLqm--G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQM--GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred cCCChHHHHHHHHHHHHh--cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence 777777888888777765 543 5667777777777777777777777664 11233 457888887778889999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.|.+.++-++..+|++..+++.|.-+-.+.|++++|..+++...+..
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999999999999999999887653
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=1e-07 Score=93.70 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=148.5
Q ss_pred cchHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHH
Q 006705 274 AALGHGKQVHSHVLRFE-IPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455666666666432 222 245677788889999999999999988763 367889999999999999999999
Q ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006705 348 LFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM- 425 (634)
Q Consensus 348 ~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 425 (634)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+.
T Consensus 120 ~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999864 454 567788888888999999999999998854 454332222223345677899999999664
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHh-------ccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 426 -PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLM-------EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 426 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
...|+...| .......|+...+. .++.+. ++.|+.+..|..++.+|.+.|++++|...|++..+.+
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 12223355555442 333333 3445566789999999999999999999999998654
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=3.6e-05 Score=78.32 Aligned_cols=424 Identities=14% Similarity=0.116 Sum_probs=253.0
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHh-CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCh
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKT-CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHS 140 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (634)
..-+......+++..-+..|+..+.. .+..-..+|.-.+......|-.+-+.++++...+-++..-+--|..++..++.
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 33344445566677777777766554 22333456666677666777777888888877776666677778888888888
Q ss_pred hHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCc--hHHHHHHHHHHHhcCCH
Q 006705 141 FEALNLFIRMLRSD------TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF--ESH--IYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 141 ~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~ 210 (634)
++|-+.+...+... .+.+...|..+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|.+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 88888877775431 233444555555555544433332222 12222332 233 36789999999999999
Q ss_pred HHHHHHHccCCCC--ChhhHHHHHHHHHh----------------cCC------hHHHHHHHHHHhhcCC----------
Q 006705 211 HEARGVFECLPER--DVVSCTAIISGYAQ----------------LGL------DEEAIELFRKLQVEGM---------- 256 (634)
Q Consensus 211 ~~A~~~~~~m~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g~---------- 256 (634)
+.|..+|++.... .+.-++.+-.+|++ .|+ ++-.+.-|+.+...+.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 9999999875432 22223333333332 111 1222223333322210
Q ss_pred -ccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----
Q 006705 257 -ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT----- 325 (634)
Q Consensus 257 -~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~----- 325 (634)
+-+..+|..-.. ...|+..+-...+.++++.= ...-...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 011112211111 12345556666677766541 11224568889999999999999999999987532
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----------------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 326 --VISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-----------------DSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 326 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-----------------d~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
..+|-.-...-.++.+++.|+++.+..... .-.| +...|...++.--..|-++....+++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 235666666677888999999988776542 1111 11223333444445567788888888
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHh---cCCchHHHHHHHHHhc
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-F-EPTA-AILGSLLGACRV---HYNVDIGEFVGQRLME 459 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 459 (634)
.+... .+ .++...-.....+-....++++.+++++- + + .|++ ..|++.+.-+.+ ....+.|..+|+++++
T Consensus 502 riidL--ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 502 RIIDL--RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHH--hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 88865 22 23333333444556777889999999985 2 2 3444 479888865543 2357889999999999
Q ss_pred cCCCCC--chHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 460 IEPENA--GNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 460 ~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.-|+.. ..|...+..=-+-|.-..|..++++..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888522 123333333345588888888888864
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=7.1e-05 Score=76.29 Aligned_cols=393 Identities=11% Similarity=0.103 Sum_probs=223.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE-----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 167 (634)
+.+|-.-+....+.|++..-+.+|+.... .-...|...+.-....|-++-++.+|++.++- .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 45677778888899999999999987543 23457999999999999999999999999873 443 3555677
Q ss_pred HHhccCCcHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHhcCCHH---HHHHHHccCCCC--C--hhhHHHHHHH
Q 006705 168 SCAGAFGFELGKQIHSLIIKS------NFESHIYVGSSLLDMYAKAGRIH---EARGVFECLPER--D--VVSCTAIISG 234 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~m~~~--~--~~~~~~li~~ 234 (634)
.++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 788899999999998877632 12556667777777766654322 234555555543 3 3479999999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc----------------------hHHHHHHHHHHHHcC--
Q 006705 235 YAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA----------------------LGHGKQVHSHVLRFE-- 290 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~i~~~~~~~~-- 290 (634)
|.+.|.+++|-++|++..+.- ....-|+.+.++|+.-.. ++-...-++.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999987653 334445555555543221 111122222222211
Q ss_pred ---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 291 ---------IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---R------TVISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 291 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
-+.++..|..-+..| .|+..+-..+|.+... | -...|..+..-|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 012222332222222 2333444444443321 1 1234666666666667777777777666
Q ss_pred HHcCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--------ccC-------ChHHHHHHHHHHHHcCC
Q 006705 353 REENKVKPD---SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG--------FEP-------EIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 353 ~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------~~p-------~~~~~~~li~~~~~~g~ 414 (634)
.+. ..+-- ..+|..-...=.+..+++.|+.+.+.......+ ..| +...|..+++..-..|-
T Consensus 414 ~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 543 11110 122222223333445556666665555432100 000 23445556666666666
Q ss_pred HHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CCchHHHHHHHH-hh--cCCcHHHH
Q 006705 415 VGEALEFIKNM---PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE--NAGNYVILSNLY-AS--AGRWEDVT 485 (634)
Q Consensus 415 ~~~A~~~~~~m---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~-~~--~g~~~~A~ 485 (634)
++....+++++ .+ .|..+. .....+..|.-++++.+++++...+.|- -...|+..+.-+ .+ .-+.+.|.
T Consensus 493 festk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 66666666665 11 222221 1222234555567777777777766543 112222222222 22 23677888
Q ss_pred HHHHHHhhCCCc
Q 006705 486 RVRELMKEKAVT 497 (634)
Q Consensus 486 ~~~~~m~~~~~~ 497 (634)
.+|++..+ |.+
T Consensus 571 dLFEqaL~-~Cp 581 (835)
T KOG2047|consen 571 DLFEQALD-GCP 581 (835)
T ss_pred HHHHHHHh-cCC
Confidence 88888876 443
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=4.1e-05 Score=78.20 Aligned_cols=423 Identities=11% Similarity=0.036 Sum_probs=234.8
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCC
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKA 138 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 138 (634)
-.+++.| ..+.+..++...+.+++. ++.-..+.....-.+...|+.++|......-.. ++.+.|..+.-.+-...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3344433 445666677777666663 222222222222223345777777777765544 45677888877777778
Q ss_pred ChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 006705 139 HSFEALNLFIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVF 217 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 217 (634)
++++|+..|+..... .| |...+.-+--.-++.++++.......+..+.. +.....|..++-++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887763 34 33444444444456677776666666665542 334555667777777777777777766
Q ss_pred ccCCC-----CChhhHHHH------HHHHHhcCChHHHHHHHHHHhhcCCccChhhHH-HHHHHHhcccchHHHHHHHHH
Q 006705 218 ECLPE-----RDVVSCTAI------ISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA-SVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 218 ~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~i~~~ 285 (634)
+...+ ++...+.-. ......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 54422 222222211 23345667777777766554432 22332222 233445677788888888887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhcCCC--ChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCC
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSR-RVFDNMSER--TVISWNAMLVGYSKHGMG-REVVELFNLMREENKVKPD 361 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~~--~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~pd 361 (634)
++... |.+...|--+..++.+--+.-++. .+|....+. -...-..+--........ +..-+++..+.+. |++|-
T Consensus 245 Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v 322 (700)
T KOG1156|consen 245 LLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV 322 (700)
T ss_pred HHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch
Confidence 77764 333344444444554333333333 555544421 000000000001111222 2333455566666 77654
Q ss_pred HHHHHHHHHHHhccCcHH---H-HHHHHHHhhhccC------C--ccCChH--HHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006705 362 SVTYLAVLSGCSHGGMED---R-GLAVFHEIVDCKD------G--FEPEIE--HYGCVVDMLGRAGRVGEALEFIKNM-P 426 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~~------~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~ 426 (634)
-..+.++ +-.....+ + +..+...+..... + -+|+.. ++-.++..|-+.|+++.|...++.. .
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333333 22211111 1 1222222221100 0 034443 4456778888999999999999886 4
Q ss_pred CCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 427 FEPTAAI-LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 427 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
..|+.+- |..-...+...|+++.|...++.+.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4566443 333446678888999999999999999877654444566667788999999999988876664
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-05 Score=79.99 Aligned_cols=408 Identities=10% Similarity=-0.013 Sum_probs=256.8
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC----
Q 006705 46 LIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---- 121 (634)
Q Consensus 46 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 121 (634)
+.++....+.-|...|-.+--+....|+++.+.+.|+.....- ......|+.+-..|..+|.-..|..++++-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3445555567788889999888899999999999999887654 33466788899999999999999999987543
Q ss_pred CCcchHHHHH-HHHH-hCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcc----C-------CcHHHHHHH
Q 006705 122 RNVVSWTAMI-SAYS-QKAHSFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGA----F-------GFELGKQIH 182 (634)
Q Consensus 122 ~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~ 182 (634)
|+..+--.|+ ..|. +-+..++++++-.+.... .+.|- .|..+.-+|... . ...++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3333332333 2233 346777777776666551 13333 333333333211 1 134566777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 183 SLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL----PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 183 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+..++.+ +.|+.+.--|.--|+..++++.|.+...+. ...+...|.-+.-.+...+++.+|+.+.+..... .|
T Consensus 468 e~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~ 544 (799)
T KOG4162|consen 468 EEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FG 544 (799)
T ss_pred HHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hh
Confidence 7777765 223333223555678888999998776654 3457889999999999999999999998876654 11
Q ss_pred C-hhhHHHHHHHHhcccchHHHHHHHH-----------------HHH----HcCC-------CCchhHHHHHHHHHH---
Q 006705 259 N-YVTYASVLTALSGLAALGHGKQVHS-----------------HVL----RFEI-------PSYVVLQNSLIDMYS--- 306 (634)
Q Consensus 259 ~-~~t~~~ll~~~~~~~~~~~a~~i~~-----------------~~~----~~~~-------~~~~~~~~~li~~~~--- 306 (634)
+ ......-+..-...++.+++..... +.. +.|+ .....++..+.....
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 1100000111111222222221111 111 1111 111222222222111
Q ss_pred hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 307 KCGSLTYSRRVFDNMSERT------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
+.-..+.....+...+.|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111112222222333 235666777888999999999888888754 33333455555566777899999
Q ss_pred HHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHH
Q 006705 381 GLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALE--FIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQ 455 (634)
Q Consensus 381 a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 455 (634)
|.+.|.... .+.| ++...+++..++.+.|+..-|.. +...+ ... .+...|..+...+.+.|+.+.|...|.
T Consensus 703 A~~af~~Al----~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 703 AKEAFLVAL----ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHH----hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999887 4455 47788999999999998777776 77776 333 467799999999999999999999999
Q ss_pred HHhccCCCCC
Q 006705 456 RLMEIEPENA 465 (634)
Q Consensus 456 ~~~~~~p~~~ 465 (634)
-+.++++.+|
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999988765
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.6e-07 Score=87.23 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+...|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888888888888888877765 455567777778888888888888888877765 355666666677777888
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006705 309 GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 309 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..|+++.+. |+. +...|+.+.-+|.-.+.++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888888888887764 36667777778888889999999999999888 664 5667777777888888888888888
Q ss_pred HHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 386 HEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 386 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
+..... .-.|+ .++|-.|.......|++.-|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+....
T Consensus 382 ~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 887754 22343 567877887788889999999888875 223346678888877888899999999988888888
Q ss_pred CC
Q 006705 462 PE 463 (634)
Q Consensus 462 p~ 463 (634)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 86
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=1.8e-05 Score=82.60 Aligned_cols=302 Identities=11% Similarity=0.098 Sum_probs=196.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcch-HHHHHHHHHhC-----
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVS-WTAMISAYSQK----- 137 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~----- 137 (634)
..+...|+++.|++.+..-.+. +.............|.+.|+.++|..++..+.. |+-.. |..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4456788999999888765443 333455667778888999999999999998876 43334 34444444222
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 138 AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
...+...++|+++... -|.......+.-.+..-..+ ..+...+..+++.|+|+ +++.|-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2466778888888664 35444443333223222222 23445556666677543 566677777755555555555
Q ss_pred HccCC------------------CCChhhH--HHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccc
Q 006705 217 FECLP------------------ERDVVSC--TAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAA 275 (634)
Q Consensus 217 ~~~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 275 (634)
+.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 1222234 55567788889999999999988875 455 4567777788888999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh------h----hH--HHHHHHHHhcCChH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV------I----SW--NAMLVGYSKHGMGR 343 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~------~----~~--~~li~~~~~~g~~~ 343 (634)
+.+|.+..+.....+ ..|..+-+-.+..+.++|++++|.+++.....++. . .| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999888876 45777878888888899999999988887765542 1 23 23456788889999
Q ss_pred HHHHHHHHHHHcC-CCCCCHHHHHHHHHHHhccCcHH
Q 006705 344 EVVELFNLMREEN-KVKPDSVTYLAVLSGCSHGGMED 379 (634)
Q Consensus 344 ~A~~~~~~m~~~~-g~~pd~~t~~~ll~a~~~~g~~~ 379 (634)
.|++.|..+.+.. .+.-|..-|.+. |.+.+-+.
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r 356 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLR 356 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHH
Confidence 9998888776641 233444444332 55555443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=2e-06 Score=84.64 Aligned_cols=115 Identities=12% Similarity=-0.089 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 139 HSFEALNLFIRMLRSD-TEPN--EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 139 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+..+++.. +.+...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555554321 1121 1234444444555566666666666655543 3345556666666666666666666
Q ss_pred HHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 216 VFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 216 ~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.|++..+ | +..+|..+...+...|++++|++.|++..+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6665532 2 3445555666666666666666666666553
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=5.1e-07 Score=80.32 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
+...+.-+|.+.|+...|..-+++..+. -+.+..++..+...|.+.|..+.|.+.|+...+.. +-+-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhH
Confidence 3445677899999999999999999875 23344788888889999999999999999998532 346788999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 408 MLGRAGRVGEALEFIKNMPFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
.+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998732232 45788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 006705 484 VTRVRELMKEKAV 496 (634)
Q Consensus 484 A~~~~~~m~~~~~ 496 (634)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999877654
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=6.6e-06 Score=85.74 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=30.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEFT-FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 204 (634)
+...|++++|++.+..-.. ..+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3445555555555544322 2233332 2333344455555555555555555554 33333344444433
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=2e-06 Score=83.38 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccC
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS----HGG 376 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~----~~g 376 (634)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHHHHHHHHHHhCch
Confidence 334566678888887777665 45566666777888888888888888888653 333 34444444432 234
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCc-hHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNV-DIGEFV 453 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~-~~a~~~ 453 (634)
.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. .. +.|..+...++..+...|+. +.+.+.
T Consensus 182 ~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 67888888888765 44677778888888888888888888887774 22 23455666677766777776 556777
Q ss_pred HHHHhccCCCC
Q 006705 454 GQRLMEIEPEN 464 (634)
Q Consensus 454 ~~~~~~~~p~~ 464 (634)
..++....|+.
T Consensus 259 l~qL~~~~p~h 269 (290)
T PF04733_consen 259 LSQLKQSNPNH 269 (290)
T ss_dssp HHHCHHHTTTS
T ss_pred HHHHHHhCCCC
Confidence 88877777764
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=1.3e-05 Score=82.42 Aligned_cols=193 Identities=14% Similarity=0.213 Sum_probs=120.9
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 346 (634)
+.+......+.+|..+++.+..... -..-|.-+.+-|+..|+++.|+++|-+.. .++--|..|.++|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 4445556677777777776665532 22345566777888888888888876542 3455677788888888887
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 347 ~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
++-.+.. |.......|.+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++..+-.
T Consensus 812 kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 812 KLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7765442 333344455555555667777777777654332 3432 3677778888887777777652
Q ss_pred CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 427 FEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 427 ~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
|+ ..|...+..-+...|+.+.|+.-+-+ ..-|..-+++|-..+.|++|.++-+.
T Consensus 878 --~d~l~dt~~~f~~e~e~~g~lkaae~~fle--------a~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 878 --GDHLHDTHKHFAKELEAEGDLKAAEEHFLE--------AGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hhhhhHHHHHHHHHHHhccChhHHHHHHHh--------hhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 23 23444555666667777777655443 23455667777777777777776553
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.00018 Score=83.20 Aligned_cols=328 Identities=8% Similarity=-0.053 Sum_probs=174.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC------CCc--hHHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF------ESH--IYVGSSLLDMYA 205 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~ 205 (634)
....|++..+..+++.+.......+..........+...|+++++...+..+.+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211111112222233344566778888777776654310 011 112223334556
Q ss_pred hcCCHHHHHHHHccCCC----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCC---cc--ChhhHHHHHHHHhc
Q 006705 206 KAGRIHEARGVFECLPE----RDV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGM---IS--NYVTYASVLTALSG 272 (634)
Q Consensus 206 ~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~ 272 (634)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888777765322 221 2345555666778888888888777654211 11 11234444556667
Q ss_pred ccchHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C--ChhhHHHHHHHHH
Q 006705 273 LAALGHGKQVHSHVLRF----EIPS---YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE------R--TVISWNAMLVGYS 337 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~--~~~~~~~li~~~~ 337 (634)
.|+++.|...+...... +... ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888888777765542 2111 123344455566667888888777766532 1 1223444555667
Q ss_pred hcCChHHHHHHHHHHHHcC---CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHHHHHHHH
Q 006705 338 KHGMGREVVELFNLMREEN---KVKPDSVTY--LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYGCVVDML 409 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~---g~~pd~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~li~~~ 409 (634)
..|++++|.+.+.+..... +..+..... ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHH
Confidence 7788888887777764420 110000000 01112334467777777776665432 11111 11134556667
Q ss_pred HHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 410 GRAGRVGEALEFIKNM-------PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
...|+.++|...+.+. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 7778888877777664 11111 123444456677777777777777777765543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.68 E-value=0.00046 Score=70.80 Aligned_cols=410 Identities=11% Similarity=0.014 Sum_probs=229.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 006705 70 NQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNL 146 (634)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 146 (634)
..|+.++|....+.-++.+ ..+.+.|..+.-.+-...++++|.+.|..... .|...|.-+--.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4567778877776666643 33455666666666667788888888876543 3556676666666677777777777
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHH------HHHHhcCCHHHHHHHHc
Q 006705 147 FIRMLRSDTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLL------DMYAKAGRIHEARGVFE 218 (634)
Q Consensus 147 ~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li------~~y~~~g~~~~A~~~~~ 218 (634)
-.+..+. .| ....|.....+.--.|+...|..+.+...+... .|+...+.-.. ....+.|..+.|.+.+.
T Consensus 132 r~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 132 RNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6666653 33 345666677777777888888888888877652 45544443322 23346677788877776
Q ss_pred cCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHh-cccchHHHH-HHHHHHHHcC---
Q 006705 219 CLPER--DV-VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALS-GLAALGHGK-QVHSHVLRFE--- 290 (634)
Q Consensus 219 ~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~i~~~~~~~~--- 290 (634)
..... |- ..-.+....+.+.++.++|..++..+... .||..-|...+..+. +..+..++. .++....+.-
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 55432 22 22334556677888888999888888875 577776666555544 233322222 4444433321
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH----cC-------C-
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWNAMLVGYSKHGMGREVVELFNLMRE----EN-------K- 357 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-------g- 357 (634)
..|-....+.+. -..-.+...+++..+.++. +..+..+.+.|-.-...+-..++...+.. .+ |
T Consensus 288 e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 111111111100 0011111222222222221 22333333333322222111111111111 10 0
Q ss_pred -CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCH
Q 006705 358 -VKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTA 431 (634)
Q Consensus 358 -~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~ 431 (634)
-+|... |+..+...+-..|+++.|..+.+.... -.|+ ++.|..=..++...|.+++|..++++.. ..||.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 134443 344456667788888888888888873 3555 4556666677888888888888888762 13454
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-------hH--HHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-------NY--VILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..-.--..-..+..+.++|..+.....+.+-+-.. .| .-=+.+|.+.|++.+|.+-|..+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 43333334445667788888777766654432111 11 123556888888888877666553
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.67 E-value=8.4e-06 Score=72.74 Aligned_cols=199 Identities=13% Similarity=0.020 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++.. +.+..+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG----- 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG----- 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh-----
Confidence 3445556666666666666666665542 2222344444444455555555555555444443 23333444444
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
.-+|..|++++|...|++.... ..-| -..||..+.-+..+.|+.+.|..+|+
T Consensus 111 --------------------------~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 111 --------------------------AFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred --------------------------HHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 4444455555555555554443 1111 12344444444445555555555555
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
...+.. +-.....-.+.+...+.|++-.|..+++.. ...++..+.-..|..-...||.+.+-+.-.++.+..|.
T Consensus 164 raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 164 RALELD---PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhC---cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 554321 112333444445555555555555555443 11233333333344444555555555555555555554
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=3.6e-05 Score=79.22 Aligned_cols=225 Identities=15% Similarity=0.126 Sum_probs=116.1
Q ss_pred HHHHHHHcCCChHHHHHHHhhcC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc
Q 006705 98 RLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF 175 (634)
Q Consensus 98 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 175 (634)
+-|..|.+.|....|.+....-. ..|.....-+..++.+..-+++|=++|+.+.. +.-.+..+-+-.-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45666777777666665543211 23444444445555555555555555555532 11122222222223
Q ss_pred HHHHHHHHHHHHhCCCCchHHH-HHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 176 ELGKQIHSLIIKSNFESHIYVG-SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 176 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.+|.++-..+ ++..++.. ..-..-+...|+++.|..-|-+.. ..-..|.+-....+|.+|+.+++.++..
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 3333322211 22221111 111222334455565555553221 1112334455566777777777777665
Q ss_pred CCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHH
Q 006705 255 GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--TVISWNAM 332 (634)
Q Consensus 255 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~l 332 (634)
.. -.--|..+...|++.|+++.|+++|.+. ..++--|+||.+.|++++|.++-.+...| .+.+|-+-
T Consensus 762 k~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred cc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 32 2334566677777777777777776532 23455677777777777777777666554 34455555
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 006705 333 LVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~ 351 (634)
..-+-.+|++.+|.++|-.
T Consensus 831 aedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHhHHhhcchhhhhheeEE
Confidence 5556667777666666543
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-05 Score=74.37 Aligned_cols=262 Identities=12% Similarity=-0.031 Sum_probs=154.3
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 006705 89 YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM---ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV 165 (634)
Q Consensus 89 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 165 (634)
++.|+....++...|...|+.++|...|++...-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 566777778888888888888888888887665443332222 223456777777777766665431 1222233333
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC--C-CChhhHHHHHHHHHhcCChH
Q 006705 166 LTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP--E-RDVVSCTAIISGYAQLGLDE 242 (634)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~ 242 (634)
+...-..++++.|..+-+..++.. +.+...+-.-.+.+...|+.++|.-.|+... . -+..+|.-|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 333445566777777766666543 2233333333355666788888887777543 2 36678888888888888888
Q ss_pred HHHHHHHHHhhcCCccChhhHHHHH-HHHh-cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 243 EAIELFRKLQVEGMISNYVTYASVL-TALS-GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
+|.-+-+..... ++-+..+++.+- ..|. ....-++|+.+++..++.. |.-...-+.+...+...|..+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 887665554432 233344443331 2221 2233456666666665543 22234445556666666666666666665
Q ss_pred cC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 321 MS--ERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 321 m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
-. .+|....+.+.+.+...+.+.+|++.|.....
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44 35666666666666666666666666666554
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.7e-05 Score=73.06 Aligned_cols=417 Identities=11% Similarity=0.059 Sum_probs=232.1
Q ss_pred CCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHH-
Q 006705 53 GLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTA- 129 (634)
Q Consensus 53 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~- 129 (634)
|+......+.+++....+..++..|.+++..-.+.. +.+..-.+.|...|-...++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333344456677777777778888888887776653 22455556667778888888888888888765 43333332
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSC--AGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
-...+-+++.+.+|+++...|... |+...-..-+.+. -..+|+..++.+.++... +.+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecc
Confidence 234556778888999988887542 2222222222222 245777777777766542 23445555555666788
Q ss_pred CCHHHHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHH
Q 006705 208 GRIHEARGVFECLPE----RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQV 282 (634)
Q Consensus 208 g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i 282 (634)
|+.+.|.+-|+...+ ...++||..+. ..+.|+++.|++...++.+.|++--+.. ......+ .....+..-..+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHH
Confidence 899999888887654 34567776555 4467888889988888888776422110 0000000 000000011111
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006705 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-----TVISWNAMLVGYSKHGMGREVVELFNLMREENK 357 (634)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 357 (634)
+...+ +..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+... .
T Consensus 236 h~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~-n 306 (459)
T KOG4340|consen 236 HQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ-N 306 (459)
T ss_pred HHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc-C
Confidence 11111 122333344567889999999999999854 667665543221 234455555555555543 1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGR-AGRVGEALEFIKNMPFEPTAAILG 435 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~ 435 (634)
. -...||..++-.|++..-++.|-.++.+-... .+ -.+...|+ |++++.- .-..++|.+-+..+...-....-.
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l--Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk 382 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHL--TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRK 382 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch--hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23478999999999999999988887653321 11 11233333 3344433 345666665554431000000000
Q ss_pred HHHHH-HHhcCCchHH----HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 436 SLLGA-CRVHYNVDIG----EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 436 ~ll~~-~~~~~~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.-+.. -.++.+-+++ ..-+++.+++- ......-...|++..++.-+.++|..-.+-
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 00000 0112222222 11222222221 123445667788888999999999877553
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=6e-05 Score=76.83 Aligned_cols=196 Identities=11% Similarity=-0.021 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHh
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCS 373 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~ 373 (634)
..+...+...|++++|...+++..+ .+...+..+...|...|++++|..++++........|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444455666666666666665542 234455556666666666666666666655431111222 12334555566
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHH-H--HHHHHHHHcCCHHHHHHH------HHhC-CCCCCHHHHHHHHHHHHh
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHY-G--CVVDMLGRAGRVGEALEF------IKNM-PFEPTAAILGSLLGACRV 443 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~------~~~m-~~~p~~~~~~~ll~~~~~ 443 (634)
..|++++|..+++...... ...+..... + .+..-+...|..+.+.+. .... +.............++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPS-AESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccc-cCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 6666666666666654221 101111111 1 112222223322222211 1111 100011111234455566
Q ss_pred cCCchHHHHHHHHHhccCC---------CCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 444 HYNVDIGEFVGQRLMEIEP---------ENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.|+.+.|...++.+....- ...........++...|++++|.+.+......+
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6666666666655543111 123344566777889999999999999886543
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.5e-06 Score=87.27 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=171.8
Q ss_pred hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHH
Q 006705 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
.+.|++.+|.-.|+..++.+ |.+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56778888888888888776 66788888888888888888888888887764 366777788888999999999999
Q ss_pred HHHHHHHcCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 348 LFNLMREENKVK--------PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 348 ~~~~m~~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
+++.-... ..+ ++..+-.. ..+.....+....++|-++.... +..+|+++...|.-.|--.|.+++|.
T Consensus 375 ~L~~Wi~~-~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~-~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 375 MLDKWIRN-KPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL-PTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHh-CccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC-CCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99887654 110 01100000 12233334455566666666544 55689999999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 420 EFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 420 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.|+.. ..+| |...||-|....+...+.++|...+.+++++.|.-+.+...|+-.|...|.++||.+.|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999986 4555 5778999999999999999999999999999999999999999999999999999999887654
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=4.3e-05 Score=72.20 Aligned_cols=375 Identities=13% Similarity=0.077 Sum_probs=232.5
Q ss_pred HHHHHcCCChHHHHHHHhhcCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 006705 100 IVFYNKCECLSDARKMFDEMRE------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF 173 (634)
Q Consensus 100 i~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 173 (634)
+.-+....++.-|+.+++--.. .++..| +...+.+.|++++|+..+..+.+.. .|+...+..+.-...-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 3444456788999988875432 122333 3456778899999999999887754 455555655665666678
Q ss_pred CcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 174 GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 174 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
.+.+|+++-... +.++.-...|...-.|.|+-++-..+-+.+.+.. .---+|.+..-..-.+++|+++|.+...
T Consensus 106 ~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888776543 3333344455566667777666665555544321 1122344444445578999999999987
Q ss_pred cCCccChhhHHHHHH-HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhhcCC-----
Q 006705 254 EGMISNYVTYASVLT-ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK--CGSLTYS--RRVFDNMSE----- 323 (634)
Q Consensus 254 ~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A--~~~f~~m~~----- 323 (634)
. .|+-...+.-+. +|.+..-++.+.+++...++. ++.++...|.......+ .|+..++ .++-+...+
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 466666655444 456777788888888877665 34444555544443333 2332222 112221110
Q ss_pred -----CC---------------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-----
Q 006705 324 -----RT---------------------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC----- 372 (634)
Q Consensus 324 -----~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~----- 372 (634)
.| +..--.++--|.+.++..+|..+.+++. ...|-....-.+..+-
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhc
Confidence 01 1222334555788899999998877653 3455555444444332
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEALEFIKNMP--FEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.....+.-|.+.|+..-+. +.+-| ..--.++...+.-..++++.+-.++... +..|...--.+..+....|++.+
T Consensus 334 gSreHlKiAqqffqlVG~S--a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGES--ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 2223356677777766543 44333 3334556666666778888888777662 22343444457789999999999
Q ss_pred HHHHHHHHhccCCCCCchHH-HHHHHHhhcCCcHHHHHHHHHH
Q 006705 450 GEFVGQRLMEIEPENAGNYV-ILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 491 (634)
|++++-++...+..|..+|. .|..+|.+.|+.+.|..++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999888877766666665 5778899999999998877665
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=0.00016 Score=73.76 Aligned_cols=151 Identities=11% Similarity=-0.012 Sum_probs=75.6
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChHH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESHIYVGS---SLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~ 243 (634)
...|+++.+..+++.+.+.. +.+...++ .+.......|..+.+.+.++.....+ ...+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34455556655555555442 22332322 11111122344444444444322211 1223334445666667777
Q ss_pred HHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEI-PSYV--VLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 244 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
|...+++..+.. +.+...+..+...+...|++++|...+....+... .++. ..+..+...+...|++++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777776666542 22334445555556666666666666666555421 1121 2334566667777777777777776
Q ss_pred cC
Q 006705 321 MS 322 (634)
Q Consensus 321 m~ 322 (634)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 54
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=8.8e-08 Score=59.09 Aligned_cols=33 Identities=39% Similarity=0.727 Sum_probs=26.8
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888888888888888888888888888773
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=2.3e-06 Score=82.96 Aligned_cols=215 Identities=10% Similarity=0.019 Sum_probs=138.1
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-CC---ChhhHHH-HHHHHH
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-ER---TVISWNA-MLVGYS 337 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~---~~~~~~~-li~~~~ 337 (634)
..-+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.+..-++... ++ +-.++.. ....+.
T Consensus 38 ~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 34445555555554432 22222222 3444443333333332244555555554433 22 1112222 223466
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH----HcC
Q 006705 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG----RAG 413 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 413 (634)
..|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...|..++. -..
T Consensus 114 ~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc-HHHHHHHHHHHHHHhCch
Confidence 689999999988642 3455666778889999999999999999984 3344 33333444333 334
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc-HHHHHHHHH
Q 006705 414 RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW-EDVTRVREL 490 (634)
Q Consensus 414 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 490 (634)
.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999998 44578888899999999999999999999999999999999999999999999988 667788888
Q ss_pred Hhh
Q 006705 491 MKE 493 (634)
Q Consensus 491 m~~ 493 (634)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 765
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.5e-08 Score=58.94 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 189 NFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 189 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00095 Score=71.67 Aligned_cols=343 Identities=13% Similarity=0.117 Sum_probs=204.2
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCC--CChhHHHHHHHHHHcCCChHHHHHHHhhcC-CCCcch-----H
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYR--PPVYLRTRLIVFYNKCECLSDARKMFDEMR-ERNVVS-----W 127 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~-----~ 127 (634)
.|...|..++.- .-..-+++.+++++.+++ .|+.-.+..+.++...+-..+-.++++++. ++++.+ -
T Consensus 950 ~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 355556665531 123346777888877753 355566677888888888888889988875 344433 3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
|.||-...+. +.....+..+++-.-. .|+ +...+...+-+++|..+|... ..+....+.||. .-
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NI 1088 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hh
Confidence 3444443433 4445666666654322 122 233344555567777776553 334444444544 24
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-...+..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6677777777666554 45778888888888888887766433 255678888888888888888887777777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------CChhhHHHHHHHHHhcCChHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----------------------RTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~ 344 (634)
+..-.|.+ -+.||-+|++.+++.+-++++..-.. .++.-|..+...+...|++..
T Consensus 1161 kk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1161 KKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66555443 35677788888887776655431110 134455556666666666666
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
|...-++. .+..||--+-.||...+.+..| +|-.. .+-...+-..-|+..|-..|.++|-+.+++.
T Consensus 1239 AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL--~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGL--NIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCc--eEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 65544332 2446677777777766555433 22211 2333455566677777778888887777776
Q ss_pred C-CCC-CCHHHHHHHHHHHHh
Q 006705 425 M-PFE-PTAAILGSLLGACRV 443 (634)
Q Consensus 425 m-~~~-p~~~~~~~ll~~~~~ 443 (634)
. +.+ .....|+-|.-.|.+
T Consensus 1305 ~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHh
Confidence 4 322 233344444444443
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00036 Score=73.15 Aligned_cols=378 Identities=11% Similarity=0.074 Sum_probs=185.8
Q ss_pred CHhhHHHHHHH--HhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-----------CC
Q 006705 57 RFEEYDTLLNA--CVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-----------RN 123 (634)
Q Consensus 57 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~ 123 (634)
|..|-..++.. |...|+.+.|.+-...+. +..+|..+..|+.+..+++-|.-.+-.|.. .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 55555555543 455666666666555443 245677777777777777666666655543 01
Q ss_pred c-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 124 V-VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 124 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
. ..-.-......+.|..++|+.+|++-+. |..+=+.|-..|.+++|.++-+.=-+..+. .+|-.-..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHH
Confidence 1 1111111222345666666666666554 222333444556666666554332221111 12222223
Q ss_pred HHHhcCCHHHHHHHHccCCC-----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccC
Q 006705 203 MYAKAGRIHEARGVFECLPE-----------------------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISN 259 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 259 (634)
-+-..++.+.|++.|++... +|...|.-...-.-..|+.+.|+.+|...+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 33334555666555554321 1222232233333345666777776665543
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH 339 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 339 (634)
|-++....+-.|+.++|-+|-++ ..|....-.|..+|-..|++.+|...|.+.. ++..-|..+-.+
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKEN 1006 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 34455555667777777766554 2355566678888888899988888887764 222222222222
Q ss_pred C---------------ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH---------HHHhhhccCCc
Q 006705 340 G---------------MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV---------FHEIVDCKDGF 395 (634)
Q Consensus 340 g---------------~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~ 395 (634)
+ +.-.|-.+|++. |... ...+..|-++|.+.+|+++ ++-+.+.. .-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL-d~ 1076 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL-DA 1076 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc-CC
Confidence 1 222233333332 2111 1122335566666655543 22222211 11
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc---cCCCC---CchHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME---IEPEN---AGNYV 469 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~---~~~~~ 469 (634)
..|+...+.-.+.+....++++|..++-... -+..-+..|. ..+...-+++.+.+.- -.|+. .....
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 2355556666666666666666666654431 1222223232 2333333333333321 11211 12445
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 006705 470 ILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~ 489 (634)
.+++.|.++|.+..|.+-|.
T Consensus 1150 qvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHhccchHHHHHHHh
Confidence 67777778887777665543
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.4e-05 Score=74.84 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=123.6
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hhHHHHH
Q 006705 264 ASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV----------ISWNAML 333 (634)
Q Consensus 264 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----------~~~~~li 333 (634)
..+.++.-+..+++.+.+-+...+... .+..-++....+|...|........-+...+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334555556666777777777776665 5566667777777777776666555444333211 1222234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH-HHHHHHHHHHHc
Q 006705 334 VGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE-HYGCVVDMLGRA 412 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~ 412 (634)
.+|.+.++++.|+..|++.... -..||..+ +....+++........ -+.|... -...=...+.+.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ls---------~lk~~Ek~~k~~e~~a----~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTE-HRTPDLLS---------KLKEAEKALKEAERKA----YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhh-hcCHHHHH---------HHHHHHHHHHHHHHHH----hhChhHHHHHHHHHHHHHhc
Confidence 4566677788888888777665 34444322 1122233333222222 1222211 111114455667
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 413 GRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 413 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
|++..|+..+.++ ..+.|...|..-..+|.+.+.+..|..-.+..++++|+....|..=+.++.-..+|++|.+.|.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777765 22334556666666667777777777777777777777666666666666666677777777766
Q ss_pred HhhC
Q 006705 491 MKEK 494 (634)
Q Consensus 491 m~~~ 494 (634)
-.+.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 6544
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00092 Score=71.79 Aligned_cols=318 Identities=10% Similarity=0.061 Sum_probs=193.3
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAY 134 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 134 (634)
|+...+..++++...+-..+-.++++.++-.+ +..+....|-||-.-.|. +.....+..+++..-|. -.+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 55556677788877777777777877776432 222333445555444443 33444444444433222 1234455
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
..++-+++|+.+|+..- .+......++. ..++++.|.+.-+.. ..+.+|+.|..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 66777889999988752 24445555554 234555555544332 24557777888888888888888
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc
Q 006705 215 GVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY 294 (634)
Q Consensus 215 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 294 (634)
+-|=+ ..|+..|..+|....+.|.+++-.+.+...++..-.|... +.++-+|++.+++.+-+++.. .||
T Consensus 1125 eSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1125 ESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred HHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 77733 4466777888888888888888887776666655555443 356677777777666555442 233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS------------------------ERTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
..-...+.+-+...|.++.|.-+|..+. ..+..+|.-.-.+|...+.+.-|
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA----- 1268 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA----- 1268 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----
Confidence 3333334444444444444443333322 13567888888888776665433
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcC
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAG 413 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 413 (634)
+|.-. .+-....-.-.++.-|...|-+++-..+++... |++. ....|+-|.-.|+|-.
T Consensus 1269 QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L----GLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1269 QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGL----GLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh----chhHHHHHHHHHHHHHHHhcC
Confidence 33322 233344557788999999999999999998876 5543 4567888888887653
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=0.00013 Score=77.97 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=114.8
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 313 YSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 313 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-... .+....+|..+--.|....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 4455555433 3466777766554 5556676676666655543 34455777777777888889999999998887
Q ss_pred hccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchH----------HH
Q 006705 390 DCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-------PFEPTAAILGSLLGACRVHYNVDI----------GE 451 (634)
Q Consensus 390 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~----------a~ 451 (634)
.+.| +...|--........|+.-++..+|..- +.-|+...|-.-..-...+|+.+. |-
T Consensus 878 ----SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 878 ----SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred ----hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 4455 4455544444445678888888888752 223566666665555666666554 33
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
-..++.+...|+...+|.+.+...-..+.+.+|.+...+.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4456667788998899999888888888888877766654
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=1.6e-05 Score=75.80 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT-V---ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLA 367 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ 367 (634)
...+..+...|.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..++++.+...-.|.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44455556666666777777776665543 21 1 345556666666777777777777666541111111 12333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHhhhccCCccCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 368 VLSGCSHG--------GMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 368 ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 33344433 5566666666666643 2222 1221111110 000000 00112345
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+...|+++.|...++++.+..|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788899999999999999887764 367889999999999999999999988654
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=0.00085 Score=63.52 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=156.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhccCCcHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHh
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATV---LTSCAGAFGFELGKQIHSLIIKSNFESHIYV-GSSLLDMYAK 206 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~ 206 (634)
-..+...|++.+|+.-|....+- |...|.++ ...|...|....|..-+..+++. .||-.. .---...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444455555555555555431 22222222 22344455555555555555443 333211 1111234566
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHH
Q 006705 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHV 286 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 286 (634)
.|.++.|..-|+.+.+.++. -+....++.+.-..++-.. ....+..+...|+...+......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHH
Confidence 77777777777766543221 0011111111111111111 122233344556666666666666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 287 LRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM---SERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 287 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
++.. +.|...+..-..+|...|++..|+.-++.. ...+....--+-..+...|+.+.++...++..+ +.||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK 257 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHK 257 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchh
Confidence 6654 567777777777888888888776655543 345666666667777778888888877777764 456653
Q ss_pred HHHHH-------------HHHHhccCcHHHHHHHHHHhhhccCCccCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 364 TYLAV-------------LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 364 t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
..-.. +......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++...+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 21111 01122344455555555555432 222 122333444455566666666666554
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 426 -PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 426 -~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.|| +.++.--..+|.....++.|..-++++.+.+|++.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 33344 44454455666666666777777777777766653
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=1.7e-05 Score=87.23 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=168.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER--------TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
|.....|-..|......++++.|++++++.... -...|.+++......|.-+...++|++..+. . --..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c-d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C-DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c-chHH
Confidence 455677888888888999999999999887632 3457999998888889888899999999875 2 2246
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLLG 439 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~ 439 (634)
.|..|+..|.+.+..++|-++++.|.+++ .-...+|..+++.+.+..+-+.|..++.+. |-+.......-.+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 68889999999999999999999999865 467889999999999999999999999875 32223444555666
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCc
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 497 (634)
.-.++|+.+.|..+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999998999999999999999999999999999887764
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4.7e-05 Score=70.29 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=164.1
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHH-HHHHHHh
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTA-IISGYAQ 237 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~ 237 (634)
-+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34555555556666667777666655543 33455556677777777777777777777654 22222221 1233445
Q ss_pred cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (634)
.+.+.+|+++...|... |+...-..-+.+.. .-..+++..++.+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rsL 134 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRSL 134 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHHH
Confidence 67777788777777642 22211111111111 1123444444444
Q ss_pred HhhcC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 318 FDNMS-ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 318 f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
.+..+ +.+..+.+.......+.|++++|++-|+...+-+|..|- ..|+..+. ..+.|+++.|+++..+++++ |++
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieR--G~r 210 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIER--GIR 210 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHh--hhh
Confidence 44444 233333333444444555555555555555554344442 33433332 22345555555555555544 332
Q ss_pred C-------------C---------------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhc
Q 006705 397 P-------------E---------------IEHYGCVVDMLGRAGRVGEALEFIKNMPF----EPTAAILGSLLGACRVH 444 (634)
Q Consensus 397 p-------------~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~ 444 (634)
. | +..+|.-...+.+.|+++.|.+-+..||- ..|++|...+.- ....
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hccc
Confidence 1 1 12233333445688999999999999952 346676654432 2345
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+++..+.+-++-+++++|-.++++..++-+|++..-++-|..++-+-
T Consensus 290 ~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 66777777777888889887899999999999999999998887543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00044 Score=80.08 Aligned_cols=323 Identities=13% Similarity=0.020 Sum_probs=196.3
Q ss_pred HHHcCCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC--CC----CCChh--hHHHHHHHH
Q 006705 102 FYNKCECLSDARKMFDEMRE----RNVVSWTAMISAYSQKAHSFEALNLFIRMLRS--DT----EPNEF--TFATVLTSC 169 (634)
Q Consensus 102 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~----~p~~~--t~~~ll~~~ 169 (634)
.....|+++.+..+++.++. .+..........+...|++++|..++...... .. .|... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456788888888877743 22333334444556778888888888776542 11 11111 112222345
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHccCCC-------CC--hhhHHHHHHHHH
Q 006705 170 AGAFGFELGKQIHSLIIKSNFESH----IYVGSSLLDMYAKAGRIHEARGVFECLPE-------RD--VVSCTAIISGYA 236 (634)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~--~~~~~~li~~~~ 236 (634)
...|+++.+...++...+.-...+ ....+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 578888999888888776321112 13445666777888999888888776542 11 234455666778
Q ss_pred hcCChHHHHHHHHHHhhc----CCc--c-ChhhHHHHHHHHhcccchHHHHHHHHHHHHc----CCCCchhHHHHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVE----GMI--S-NYVTYASVLTALSGLAALGHGKQVHSHVLRF----EIPSYVVLQNSLIDMY 305 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~~ 305 (634)
..|++++|...+++.... +.. | ....+..+...+...|++++|...+...... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888776542 211 1 1223344445566678999988888876543 2111234445566678
Q ss_pred HhcCCHHHHHHHHhhcCC----C-ChhhHHH-----HHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHH
Q 006705 306 SKCGSLTYSRRVFDNMSE----R-TVISWNA-----MLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGC 372 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~----~-~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~ 372 (634)
...|+.+.|...++.... . ....|.. .+..+...|+.+.|.+++...... ...... .....+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 888999888887776531 1 1111111 224455678888888887665432 111111 1134566677
Q ss_pred hccCcHHHHHHHHHHhhhccC--CccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKD--GFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
...|+.++|...++....... +..+ ...+...+..+|.+.|+.++|.+.+.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888889888888887654210 3333 2456777788888999999998888876
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=1.6e-05 Score=72.75 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=112.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHC
Confidence 3457777877765444332221 11 0222366777888778887753 356788999999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 413 GRVGEALEFIKNM-PFEP-TAAILGSLLGA-CRVHYN--VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 413 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
|++++|...|++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987 3334 56677777776 466676 58999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 006705 488 RELMKEKA 495 (634)
Q Consensus 488 ~~~m~~~~ 495 (634)
++++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99997653
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0016 Score=66.29 Aligned_cols=341 Identities=12% Similarity=0.027 Sum_probs=169.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHH
Q 006705 133 AYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIH 211 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~ 211 (634)
-+.++|++++|+.....++..+ +-|...+..=+-+..+.+.++.|..+.+. .+. ..+...+--=..+..+.+..+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHcccHH
Confidence 3445556666666666665543 22333444444455555555555533221 110 111111001122233567777
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh-hHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 212 EARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV-TYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 212 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
+|.+.++.....|..+...-...+-+.|++++|+.+|+.+.+.+.+--.. --..++.+-.. ..+. .+....
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVP 168 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhcc
Confidence 77777774444443344444455667777777777777776654321111 11112111110 0110 111111
Q ss_pred CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcC--------CC-----Chh-----hHHHHHHHHHhcCChHHHHHHH
Q 006705 291 IPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMS--------ER-----TVI-----SWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 291 ~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~-----~~~-----~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..|+ ...|| ....+...|++.+|+++++... .. ++. .--.|.-.+...|+-.+|.+++
T Consensus 169 ~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1111 11222 2334556778888888777661 11 111 1223445677889999999999
Q ss_pred HHHHHcCCCCCCHHH---HHHHHHHHhccCcHHH--HHHHHHHhhhccC---------CccCChHHHHHHHHHHHHcCCH
Q 006705 350 NLMREENKVKPDSVT---YLAVLSGCSHGGMEDR--GLAVFHEIVDCKD---------GFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t---~~~ll~a~~~~g~~~~--a~~~~~~~~~~~~---------~~~p~~~~~~~li~~~~~~g~~ 415 (634)
....+. -.+|... +..=|-+...-.++-. ++..++....... .-.-...--++++.+| .+.-
T Consensus 248 ~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 999886 4555522 2222223333222222 2222222211100 0000111122334444 4566
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHH-HHHHhcC-CchHHHHHHHHHhccCCCC-CchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 416 GEALEFIKNMPFE-PTAAILGSLL-GACRVHY-NVDIGEFVGQRLMEIEPEN-AGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 416 ~~A~~~~~~m~~~-p~~~~~~~ll-~~~~~~~-~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+.+.++-...+.. |.. .+..++ .+..... ....+..++....+..|.+ ......++......|+++.|.+++...
T Consensus 324 ~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777777777533 443 444444 3333333 3667777888888888875 345556778889999999999999933
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00087 Score=67.43 Aligned_cols=394 Identities=13% Similarity=0.041 Sum_probs=227.0
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHH
Q 006705 67 ACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RN-VVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 143 (634)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+..+ |+ ...|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3446678888888888777765 44777777778888888888777765544433 32 23577777777777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcc---CCcHHHHHHHHHHHH----hCCCCchHHHHHHHH----------HHHh
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGA---FGFELGKQIHSLIIK----SNFESHIYVGSSLLD----------MYAK 206 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~----------~y~~ 206 (634)
+.-|.+-++.. +.|...++.+..+.... ++.-..-.+|..+.. .+... ...|..++. .|..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS-DPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc-cHHHHHHHHHhhcCcHhhhcccc
Confidence 88887766532 22344455555544111 000000011111100 00000 001111111 1111
Q ss_pred cCCHHHHHHHHccC----------------CCC------------C----------hhhHHHHHHHHHhcCChHHHHHHH
Q 006705 207 AGRIHEARGVFECL----------------PER------------D----------VVSCTAIISGYAQLGLDEEAIELF 248 (634)
Q Consensus 207 ~g~~~~A~~~~~~m----------------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~ 248 (634)
-.++..|...+... ..| | ..-.-.+.++.-+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11122222222111 011 0 012344666777778888888888
Q ss_pred HHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--c----hhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006705 249 RKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS--Y----VVLQNSLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
....... -+..-++..-.++...|.+......-...++.|... + ......+..+|.+.++++.|...|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8877653 333334445556677777766666555555544211 0 1112224457888899999999998855
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 323 ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
.+... -....+....++++...+...- +.|+.. -.-.=...+.+.|++..|...|.++++. . +-|...
T Consensus 326 te~Rt-----~~~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~-P~Da~l 394 (539)
T KOG0548|consen 326 TEHRT-----PDLLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--D-PEDARL 394 (539)
T ss_pred hhhcC-----HHHHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--C-CchhHH
Confidence 32111 1112233344555555544432 344441 1222245678899999999999999975 2 557889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
|....-+|.+.|.+.+|++--+.. ...|+ ...|.-=..++....+++.|...+++.++.+|++......+..++.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999998876654 33444 3345555566677788999999999999999997665554444444
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.00031 Score=75.31 Aligned_cols=377 Identities=11% Similarity=-0.010 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-C--hhhHHHHH
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP-N--EFTFATVL 166 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~--~~t~~~ll 166 (634)
...|..|...|...-+...|.+.|+..-+ -+..+|......|++..++++|..+.-.--+ ..| - ...|...-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcc
Confidence 44678888888888889999999998766 4677899999999999999999988322211 111 1 11222233
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHH---HHHHHHhcCChHH
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTA---IISGYAQLGLDEE 243 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~ 243 (634)
-.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 34667788888888888887765 6688899999999999999999999998876544443322 2223456899999
Q ss_pred HHHHHHHHhhcC------CccChhhHHHHHHHHhcccch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 244 AIELFRKLQVEG------MISNYVTYASVLTALSGLAAL-------GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 244 A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
|+..+....... ..--..++..+...+...|-. +.+.+.+..........+...|-.+-
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 999888775431 011111222222222222222 22333333333333233333333222
Q ss_pred HHHHHHHHhhcCCCChh--hHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----c--
Q 006705 311 LTYSRRVFDNMSERTVI--SWNAMLVG-YSKHGMG---R---EVVELFNLMREENKVKPDSVTYLAVLSGCSH----G-- 375 (634)
Q Consensus 311 ~~~A~~~f~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~----~-- 375 (634)
+|..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..+|..+...|.+ .
T Consensus 721 --dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred --HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCC
Confidence 2333444433 3321 11111111 1111111 1 11122211111 11223334333332221 1
Q ss_pred -C-cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHH
Q 006705 376 -G-MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 376 -g-~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
+ +...|..-+...++. -..+...|+.|.-+ .-.|.+.-|...|-+- ..+....+|..+...|....|++.|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhh
Confidence 1 223455555555532 13355666766555 5556777777766554 33456778888888888999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
.++.+...++|.|...+.-...+.-..|+.-++..+|..
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999888887777777777888888877776
No 110
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00024 Score=69.92 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=103.8
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006705 311 LTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMG--REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 311 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
++++...++++.+ ++..+|+.....+.+.|+. ++++++++++.+. -+-|..+|.....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555554432 2334455443334444432 4556666666654 2334556666666666666677777777
Q ss_pred HHhhhccCCccCChHHHHHHHHHHHHc---CC----HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC----CchHHHH
Q 006705 386 HEIVDCKDGFEPEIEHYGCVVDMLGRA---GR----VGEALEFIKNM-PF-EPTAAILGSLLGACRVHY----NVDIGEF 452 (634)
Q Consensus 386 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~----~~~~a~~ 452 (634)
+.+++. . ..+...|+.....+.+. |. .+++++...++ .. +-|...|+.+...+...+ +..++..
T Consensus 166 ~~~I~~--d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 166 HQLLEE--D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH--C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 776653 1 23445555554444433 22 23455555343 22 345677888887777633 3456777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcC------------------CcHHHHHHHHHHh
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAG------------------RWEDVTRVRELMK 492 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 492 (634)
...++...+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888889999998642 2366777777773
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=0.00018 Score=79.62 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHh-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-C-hhhH
Q 006705 156 EPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKS-NFE---SHIYVGSSLLDMYAKAGRIHEARGVFECLPER-D-VVSC 228 (634)
Q Consensus 156 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~ 228 (634)
.|| ...|..-|......++++.|+++.+++++. ++. .-..+|.+++++-...|.-+...++|++..+- | -..|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 344 456777777888899999999999998864 221 12457888888888889889999999987652 3 3468
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHh
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMYSK 307 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~ 307 (634)
..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++++.=.. -.+.+..-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999875 3445667888888899999989999999988876321 246667777888899
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 380 (634)
+|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++.... ++.|-. ..|.-.|..=.+.|+-+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCchhh
Confidence 9999999999998874 35678999999999999999999999999998 787765 445555554444455433
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.29 E-value=0.00085 Score=63.51 Aligned_cols=287 Identities=14% Similarity=0.123 Sum_probs=192.7
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHhhcCCccChhhHH-HHHHHHhcccc
Q 006705 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAII---SGYAQLGLDEEAIELFRKLQVEGMISNYVTYA-SVLTALSGLAA 275 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 275 (634)
|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-|.+..+. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 445555667777777777777666666665543 3566677777777777666653 56643211 11233456777
Q ss_pred hHHHHHHHHHHHHcCCCCc----h----------hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 006705 276 LGHGKQVHSHVLRFEIPSY----V----------VLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSK 338 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~----~----------~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 338 (634)
++.|..=|..+++.....+ . ......+..+...|+...|+.....+.+ -|+..|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 7777777777766542111 0 1111233345567888888888887764 377777778889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH----HHHH---H-----
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH----YGCV---V----- 406 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~----~~~l---i----- 406 (634)
.|.+..|+.=++...+. -.-+..++--+-..+...|+.+..+...++.. .+.||-.. |..| +
T Consensus 202 ~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL----KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECL----KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred cCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH----ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999888777664 23345566666677788899999888888877 44565332 2221 1
Q ss_pred -HHHHHcCCHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 407 -DMLGRAGRVGEALEFIKNM-PFEPTAA-----ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 407 -~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
....+.+++.++.+-.++. ...|... .+..+-.+++..+++-+|.+...++++++|+|..++.--..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123456666666655553 4445422 23344467788899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhC
Q 006705 480 RWEDVTRVRELMKEK 494 (634)
Q Consensus 480 ~~~~A~~~~~~m~~~ 494 (634)
.+++|+.-++...+.
T Consensus 356 ~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 356 MYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888654
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=2.3e-05 Score=66.66 Aligned_cols=119 Identities=7% Similarity=0.003 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+.+..-.+...+...|++++|.++|+-. .. +-+..-|-.|..+|...|++++|...+.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777788999999999999986 22 346678899999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006705 476 ASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 539 (634)
...|+.+.|.+.|+...... ..+|+...+.++++.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999886431 245666667667777666554
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.9e-06 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 159 (634)
.+||+||.+|++.|++++|.++|++|...|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=3.6e-05 Score=66.56 Aligned_cols=108 Identities=10% Similarity=-0.081 Sum_probs=63.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 442 (634)
+.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. .. +.+...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334445556666666666666666542 1335556666666666666666666666665 11 234555666666666
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
..|+.++|...++++++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 666666666666666666666666555544443
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=2.7e-05 Score=67.35 Aligned_cols=106 Identities=7% Similarity=-0.080 Sum_probs=90.8
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
.+++...+ +.|+ .+..+...+...|++++|...|+.. .. +.+...|..+..++...|++++|...++++.++
T Consensus 14 ~~~~~al~----~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS----VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH----cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555553 3444 4666788899999999999999986 33 347788999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 461 EPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 461 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.4e-06 Score=53.49 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (634)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.16 E-value=0.0002 Score=65.50 Aligned_cols=154 Identities=10% Similarity=0.116 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 381 (634)
+..|.+.|+++......+.+..+. ..|...++.++++..+++..+. -+.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445777777776654443332221 0122355667777777777664 355667788888888888899999
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDML-GRAGR--VGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
...|+...+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888853 233677778887764 67777 48888888886 3333 566777777888889999999999999
Q ss_pred HhccCCCCCchH
Q 006705 457 LMEIEPENAGNY 468 (634)
Q Consensus 457 ~~~~~p~~~~~~ 468 (634)
++++.|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 998888865433
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00014 Score=66.58 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILG 435 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~ 435 (634)
..|+......+-.++...|+-+....+...... ....+....+.++....+.|++.+|...|++. +-++|...|+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 345433335555667777777777777766553 23445666667888888888888888888886 4456778888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 436 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+.-+|.+.|+.+.|...+.+++++.|.++..++.|...|.-.|+++.|..++......
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888877654
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00015 Score=73.25 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=145.1
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 006705 169 CAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAI 245 (634)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 245 (634)
+.+.|++.+|.-.|+..++.. +.+...|.-|.-.-...++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677888888888887765 55677777777777777777777777766544 35566666777788888888888
Q ss_pred HHHHHHhhcCCc--------cChhhHHHHHHHHhcccchHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 246 ELFRKLQVEGMI--------SNYVTYASVLTALSGLAALGHGKQVHSHVLR-FEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 246 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
..|+.-.....+ ++..+-.. ..+.....+....++|-.+.. .+...|+.++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543210 00000000 111222233444444444443 4445777788888888888888888888
Q ss_pred HHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 317 VFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 317 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.|+.... | |...||.|...++...+.++|+..|++..+ ++|+- .....|.-+|...|.+++|...|=..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8887763 3 677888888888888888888888888876 46765 3444556678888888888877765543
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00049 Score=72.23 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
-+-..|+.+.|+.+|...+. |-+++...+-.|+.++|-++-++- -|......|..+|-..|+
T Consensus 921 YlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es--------gd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES--------GDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc--------ccHHHHHHHHHHhhhhHH
Confidence 33445666777776665543 334555566677888777765543 255666778999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-----------CchHHHHHHHHhhcCCcHH
Q 006705 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-----------AGNYVILSNLYASAGRWED 483 (634)
Q Consensus 415 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 483 (634)
+.+|..+|.+.. ++..-|..|..++--++-. .-++-..|.+ +.....-+.+|-++|.+.+
T Consensus 983 v~~Av~FfTrAq------afsnAIRlcKEnd~~d~L~---nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ------AFSNAIRLCKENDMKDRLA---NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcCHHHHHH---HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH
Confidence 999999998763 4455555555554433221 1111111111 1123345677888999888
Q ss_pred HHHHH
Q 006705 484 VTRVR 488 (634)
Q Consensus 484 A~~~~ 488 (634)
|+++-
T Consensus 1054 ALelA 1058 (1416)
T KOG3617|consen 1054 ALELA 1058 (1416)
T ss_pred HHHHH
Confidence 87753
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=9.7e-05 Score=76.62 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=128.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
+++|--..-..+...+.++|-...|..+|++. ..|.-.|-.|...|+..+|..+..+-.+. +||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhh
Confidence 34566666678889999999999999999975 67888899999999999999988777653 78899999998
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 447 (634)
+......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8888888888888888766532 1111111122345666666665542 2222 334555555555666666
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
+.|...|.....++|++...|+.+..+|.+.|+-.+|...+++..+-+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666666666666665444
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.10 E-value=0.00016 Score=68.87 Aligned_cols=181 Identities=14% Similarity=0.003 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh---hHH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP-S-YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVI---SWN 330 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~---~~~ 330 (634)
....+......+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...|+++.+ | +.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456777778889999999999999999876421 1 124667788999999999999999999864 3 222 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 331 AMLVGYSKH--------GMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 331 ~li~~~~~~--------g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
.+..++.+. |+.++|.+.|+++... .|+.. ....+... .. ...... ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---------~~~~~~----------~~ 168 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---------LRNRLA----------GK 168 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---------HHHHHH----------HH
Confidence 556666654 7889999999999876 45543 22222111 00 000000 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM----PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
...+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124556677888888888877775 2122 245677777888888888888877776655444
No 124
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.7e-06 Score=51.39 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP 157 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 157 (634)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.08 E-value=0.00028 Score=76.72 Aligned_cols=160 Identities=9% Similarity=-0.043 Sum_probs=124.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG 403 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 403 (634)
++..+-.|.....+.|++++|..+++...+. .||. .....+...+.+.+.+++|+...+..... -+-+.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 5778888889999999999999999999874 6765 66777888899999999999999999853 234577788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNMP-FEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
.+..++.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|...++++.+...+-...|+.++ +++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHH
Confidence 88899999999999999999972 233 4778999999999999999999999999987665444444332 233
Q ss_pred HHHHHHHHHHhhCCC
Q 006705 482 EDVTRVRELMKEKAV 496 (634)
Q Consensus 482 ~~A~~~~~~m~~~~~ 496 (634)
..-...++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 344445555543333
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00044 Score=63.33 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=84.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
+-..+...|+.+.+..+....... .+-|..............|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHHHHHHH
Confidence 344455555555555555544321 222333333455555566666666666666654 335566666666666666
Q ss_pred cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
.|++++|..-|.+. .+. .+....+.|...+...|+.+.|+.++.......+.+...-..|.-+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 222 233445555566666666666666666666655555556666666666666666666553
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.029 Score=60.34 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCC
Q 006705 433 ILGSLLGACRVHYNVD---IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDP 500 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 500 (634)
+.+.|+..|++.++.. +|.-+++......|.|...-..|+.+|+-.|-+..|.++++.+.-+.+..++
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4567888999988866 5566778888899999888889999999999999999999999777666554
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00016 Score=75.12 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=113.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+-++ -+||+..|..|.+......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 4445555666666666666552 244455566666666666666655555 25666666666665555555
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 210 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 210 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
+++|.++++....+--..|+-+ ..++++++++.+.|+.-.+.
T Consensus 473 yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~----------------------------------- 514 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEI----------------------------------- 514 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhc-----------------------------------
Confidence 5666666655433311111111 12245556665555544432
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--ER-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
. +....+|-.+..++.++++++.|.+.|..-. +| +..+||.+-.+|.+.|+-.+|...+++..+. . .-+-..+-
T Consensus 515 n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWE 591 (777)
T KOG1128|consen 515 N-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWE 591 (777)
T ss_pred C-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeee
Confidence 2 2233344444444555555555555555443 23 3445555555555555555555555555554 2 22222333
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG 410 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 410 (634)
..+....+.|.+++|.+.+..+.... ....|..+...++....
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~-~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLR-KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhh-hhcccchhhHHHHHHHH
Confidence 33334445555555555555554432 11224444444444333
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=8.9e-06 Score=50.50 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.00024 Score=71.36 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
-.+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-|...+..-...|.+.++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3456666677889999999999999887777778888888889999999999998875 33354555555556889999
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 429 (634)
++.|+.+.+++.+. .+-+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999853 23356799999999999999999999999997543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.001 Score=66.30 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA-VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCV 405 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l 405 (634)
.+--..-.+...|++++|+..++.+... .||...|.. ....+...++.++|.+.++.+... .|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHH
Confidence 3333444566788999999999998875 466555544 455688899999999999999854 555 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
.++|.+.|++.+|+.+++.. ..+.|...|..|..+|...|+..++.. .....|...|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence 89999999999999999886 445678889999999999998776654 34567788899999
Q ss_pred HHHHHHHHhhCC
Q 006705 484 VTRVRELMKEKA 495 (634)
Q Consensus 484 A~~~~~~m~~~~ 495 (634)
|........++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887664
No 132
>PLN02789 farnesyltranstransferase
Probab=97.98 E-value=0.0042 Score=61.29 Aligned_cols=207 Identities=12% Similarity=0.025 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
+.+-..+...++.++|+.+..++.+. .|+..| |..--..+...+ .++++...+..+.+.. +.+..+|+...-.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33444455566777777777777653 444433 333333344445 4677777777777665 444555665544555
Q ss_pred hcCCH--HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc---Cc-
Q 006705 307 KCGSL--TYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG---GM- 377 (634)
Q Consensus 307 ~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~---g~- 377 (634)
+.|+. +++..+++++.+ +|..+|+...-.+...|+++++++.++++.+. . .-|...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccc
Confidence 55552 556666666653 46778888888888888888888888888876 3 23444555544444333 22
Q ss_pred ---HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 006705 378 ---EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA----GRVGEALEFIKNM-PFEP-TAAILGSLLGACRV 443 (634)
Q Consensus 378 ---~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 443 (634)
.++...+...++.. .+-+...|+.+...|... ++..+|.+++.+. ...| +......|+..+..
T Consensus 196 ~~~~e~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24566666566542 244667787777777763 3445677777665 2233 45556666666654
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0063 Score=55.98 Aligned_cols=153 Identities=13% Similarity=0.045 Sum_probs=75.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccCc
Q 006705 302 IDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS----HGGM 377 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~----~~g~ 377 (634)
...|.+.|++++|.+.......-.....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++. ..+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchh
Confidence 34456666666666665552222222222 23344555566666666666543 24455554544432 2334
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCc-hHHHHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNV-DIGEFVG 454 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~ 454 (634)
+.+|.-+|++|.+ ...|++.+.+-...+....|++++|..+++.. ....+..+...++......|.. +.-.+..
T Consensus 189 ~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5566666666654 23555555555555555566666666655554 2223344444444333333333 2234455
Q ss_pred HHHhccCCC
Q 006705 455 QRLMEIEPE 463 (634)
Q Consensus 455 ~~~~~~~p~ 463 (634)
.++....|.
T Consensus 266 ~QLk~~~p~ 274 (299)
T KOG3081|consen 266 SQLKLSHPE 274 (299)
T ss_pred HHHHhcCCc
Confidence 555555555
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00013 Score=73.29 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 442 (634)
..+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ..+.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~----~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER----DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc----CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666777888888888888754 244 4445777777777778888887775 22335555555667788
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..++++.|..+++++.+..|++..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999886
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0036 Score=62.54 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=130.3
Q ss_pred CHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006705 310 SLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 310 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+. .-...-|..-+ .+...|.+++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHH-HHHHhcccchHHH
Confidence 45566666666653 34555566666544433333333333222211 11223344333 4456789999999
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
.++.+.+. .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|...+.....-+
T Consensus 328 ~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 99999863 4556777788899999999999999999997 44566 6677888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 462 PENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 462 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
|+++..|..|..+|..+|+..+|.....++..
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999998888753
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00012 Score=62.78 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+......+...+.+.|++++|.+.++.. .. +.+...|..+...+...|+++.|...++++.+.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777778888888888888776 22 335667777778888888888888888888888888888888889999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999988887654
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0046 Score=68.27 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG 340 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 340 (634)
..+..+..+|.+.|..+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 355556666666666666666666666666 56667777777777777 777777766543 22356666
Q ss_pred ChHHHHHHHHHHHHc
Q 006705 341 MGREVVELFNLMREE 355 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~ 355 (634)
++.++.++|.++...
T Consensus 184 q~~~~~e~W~k~~~~ 198 (906)
T PRK14720 184 QYVGIEEIWSKLVHY 198 (906)
T ss_pred cchHHHHHHHHHHhc
Confidence 777777777777664
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.93 E-value=0.002 Score=70.98 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=160.1
Q ss_pred cCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHH
Q 006705 52 LGLEM-RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAM 130 (634)
Q Consensus 52 ~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 130 (634)
....| +...+..|+..+...+++++|.++.+...+.. +.....|-.+...|...++.+++..+ .+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~ 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NL 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hh
Confidence 34445 45568889999989999999999999777653 22222333333366666665555544 34
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
+.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444455553334444455442 2355678888999999999999999999999988 77899999999999999 99
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhH-HHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTY-ASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 211 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
++|++++.+. +..|...+++.++.+++.++... .|+...+ .-++ +.+...
T Consensus 166 ~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~ 216 (906)
T PRK14720 166 EKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGH 216 (906)
T ss_pred HHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhh
Confidence 9999987654 33377788999999999999875 3443332 2222 222221
Q ss_pred -CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 006705 290 -EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYS 337 (634)
Q Consensus 290 -~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 337 (634)
|...-+.++-.|-..|-+..+++++..+|+.+.+ .|.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233344555666677777888888888887764 34455555666655
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0031 Score=57.93 Aligned_cols=168 Identities=9% Similarity=0.061 Sum_probs=112.1
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER-T 325 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~ 325 (634)
+.+.+.......+......-...|...+++++|.+...... +......=+..+.|..+.+-|.+.+++|.+- +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 44444444444443444444556777788888877765411 1222222244566778888999999998874 4
Q ss_pred hhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 326 VISWNAMLVGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 326 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
..+.+.|.+++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..++++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~dpet 243 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKDPET 243 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCCHHH
Confidence 4566666666554 34688899999999874 78999999999999999999999999999998753 345666
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHhC
Q 006705 402 YGCVVDMLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~-~~~~~m 425 (634)
...+|..-...|...++. +.+.+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666655666554433 344444
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0014 Score=71.46 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=118.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTY 365 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~ 365 (634)
..+.++..+-.|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 3466788888999999999999999999999874 4 5667888999999999999999999999875 5666 555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLL 438 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 438 (634)
..+..++.+.|.+++|..+|+++... .+-+...+..+...+-+.|+.++|...|++. ...|....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66667789999999999999999963 2345788999999999999999999999987 2345555555554
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.2e-05 Score=47.43 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 155 (634)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=2.7e-05 Score=47.03 Aligned_cols=31 Identities=39% Similarity=0.777 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGM 256 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 256 (634)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.00084 Score=57.45 Aligned_cols=100 Identities=11% Similarity=-0.058 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
.....+...+...|++++|...++.+... -+.+...+..+...|.+.|++++|...+++. .. +.+...|..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34455556667777777777777777653 2345677777777777777888877777765 22 3345566666677
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+...|+.+.|...++++.+..|++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccc
Confidence 7778888888888888888887754
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0016 Score=56.53 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPD---SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHY 402 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~ 402 (634)
.|..++..+. .++...+...++.+.+. .+.+ ......+...+...|++++|...|+.+... .-.|. ....
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~--~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN--APDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4444555443 55566666666666554 1111 122223334455566666666666666643 21111 1123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
-.|...+...|++++|+..++..+. .+-.+..+..++++|.+.|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~---------------------------------~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPD---------------------------------EAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccC---------------------------------cchHHHHHHHHHHHHHHCCCHH
Confidence 3345555556666666666554321 1112345556777777777777
Q ss_pred HHHHHHHH
Q 006705 483 DVTRVREL 490 (634)
Q Consensus 483 ~A~~~~~~ 490 (634)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 77777764
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00054 Score=53.85 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
+..+...+...|++++|...+++. ...| +...|..+...+...++++.|...++......|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 2233 34566677777788888888888888888888887778888888888889
Q ss_pred CcHHHHHHHHHHhh
Q 006705 480 RWEDVTRVRELMKE 493 (634)
Q Consensus 480 ~~~~A~~~~~~m~~ 493 (634)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888887754
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.00088 Score=55.71 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
..+..++...|+.+.|...++++.+..|++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 333334444444444444444444444443
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0086 Score=54.69 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS-GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 413 (634)
+....|+.+.|...++++... + |.+.-...+=. -+-..|.+++|.++++.+.++ . +.|..++..=+-+.-..|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--d-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--D-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--C-cchhHHHHHHHHHHHHcC
Confidence 334445555555555555554 2 33321111111 123345555666666655543 1 334444444444444455
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC---CcHHHHHHH
Q 006705 414 RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG---RWEDVTRVR 488 (634)
Q Consensus 414 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 488 (634)
+.-+|++-+.+. .+..|...|.-+-..|...|+++.|...++++.=+.|.++..+..+++.+.-.| +++-|.+.+
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 544555444433 233455566666666666666666666666666666665555555555554443 344455555
Q ss_pred HHHhh
Q 006705 489 ELMKE 493 (634)
Q Consensus 489 ~~m~~ 493 (634)
.+..+
T Consensus 215 ~~alk 219 (289)
T KOG3060|consen 215 ERALK 219 (289)
T ss_pred HHHHH
Confidence 54443
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.48 E-value=0.16 Score=51.83 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=35.2
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMIS 132 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 132 (634)
|..+|..|++-+... ..++++..++++... ++.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 444555555544333 455555555555432 233344444555555555555555555554332 24444554443
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.47 E-value=0.0063 Score=52.73 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVI------SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYL 366 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~ 366 (634)
...|..++..+. .++...+...++.+.+.... ..-.+...+...|++++|...|+..... ...|+. ....
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 346667777664 88999998888888753222 2333456788999999999999999987 433332 3455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...+...|++++|+..++.... -......+..+.+.|.+.|+.++|...|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567788999999999999977543 234566778899999999999999999875
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.016 Score=59.62 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=108.9
Q ss_pred HHHHHHHHhccCCcHHHHHH--HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 006705 162 FATVLTSCAGAFGFELGKQI--HSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 239 (634)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 239 (634)
++..=.+|.+..+...-+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433332 345666776677654 45566678889998888754 55
Q ss_pred ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
....|+++|..|+-- -..+-+...|..++-+.+.+.-.+ +..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 556666666655421 111222333333333333221111 011111112334555666777766554
Q ss_pred hcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh
Q 006705 320 NMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI 399 (634)
Q Consensus 320 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 399 (634)
...+|-.+-++++-+++-.. +..+...+..-+-+...+..|-++|..|-..
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~~-----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDKA-----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcchh-----hhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 23455555555554444322 3445555555555666677777888777532
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTA 431 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 431 (634)
..++++....+++++|..+-++.| ..||+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccc
Confidence 346777788888888888888774 34443
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00013 Score=56.40 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+..++...|+++.|..++++ .+.+|.++.....++.+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33444444444444444433 333343344555667777788888888877764
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0021 Score=53.37 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---CchHHHH
Q 006705 400 EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVIL 471 (634)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 471 (634)
.++..++..+.+.|++++|.+.|.++ ...|+ ...+..+..++...|+++.|...++.+....|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677777888888888888776 22232 2355567778888888888888888888887774 4568889
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998763
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0048 Score=60.00 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
.+|..++...-+.+..+.|..+|.+..+.. ..+...|...... +...++.+.|..+|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence 467788888888888889999998887642 2233334333333 33456777899999999874 46678889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+..-...|+.+....+.+++.+.-|++ .....+++-|
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry 150 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY 150 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence 99999999999999999886 223333 489999999999999999999998888888774 3333344433
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.016 Score=53.09 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHHHHHcC--C-CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 339 HGMGREVVELFNLMREEN--K-VKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~--g-~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
..+.++.++++.+|.... | ..||.. .|-.+.-|....|..+.|...++.+... ++-+..+-..-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhc
Confidence 346788888888776531 3 556663 4556666777889999999999998874 33333333333344567899
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 415 VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 415 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+++|+++++.. ..+.|.+++.--+......|..-+|.+.....++..|.|..+|.-|.++|...|.++.|.-.++++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999997 3345677787777888888988899999999999999999999999999999999999999999996
Q ss_pred h
Q 006705 493 E 493 (634)
Q Consensus 493 ~ 493 (634)
-
T Consensus 182 l 182 (289)
T KOG3060|consen 182 L 182 (289)
T ss_pred H
Confidence 4
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0032 Score=49.29 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.+.++...+. .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 344455555566666666666665543 1222344455555555556666666666655542 12233455555555
Q ss_pred HHHcCCHHHHHHHHHh
Q 006705 409 LGRAGRVGEALEFIKN 424 (634)
Q Consensus 409 ~~~~g~~~~A~~~~~~ 424 (634)
+...|+.++|...+.+
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 5555666655555544
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0085 Score=58.54 Aligned_cols=267 Identities=9% Similarity=-0.016 Sum_probs=161.6
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccc
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAA 275 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~ 275 (634)
..+.+.+..++.+|++.+....+ .++.-|..-...+...|++++|+--.+.-.+. +|.. .+..-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33455666677777766654432 34555666666677777777776655544432 2222 233333344444444
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHH-HHHHHhcCChHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAM-LVGYSKHGMGREVVELF 349 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~ 349 (634)
..+|.+.+. +...+ ....|...++.... |.-.+|-.+ ...+.-.|++++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443 00000 11112222222221 222334333 23566788888888877
Q ss_pred HHHHHcCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhhhccCCccCChH-------------HHHHHHHHHHHcCC
Q 006705 350 NLMREENKVKPDSVTYLAVLS--GCSHGGMEDRGLAVFHEIVDCKDGFEPEIE-------------HYGCVVDMLGRAGR 414 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-------------~~~~li~~~~~~g~ 414 (634)
....+. .++ ..+..+++ ++--.++.+.|...|++.+ .+.|+.. .+..=.+...+.|+
T Consensus 193 ~~ilkl---d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal----~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 193 IDILKL---DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL----RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHhc---ccc-hhHHHHhcccccccccchHHHHHHHhhhh----ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 666654 111 12222333 2445677888888888877 3455422 22233455678899
Q ss_pred HHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 415 VGEALEFIKNM-PFE-----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
+.+|.+.+.+. .+. |+...|.....+..+.|+.++|..-.+.+.+++|.-...|..-++++...++|++|.+-+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 333 445555556677788999999999999999999998888888999999999999999999
Q ss_pred HHHhhCCC
Q 006705 489 ELMKEKAV 496 (634)
Q Consensus 489 ~~m~~~~~ 496 (634)
+...+...
T Consensus 345 ~~a~q~~~ 352 (486)
T KOG0550|consen 345 EKAMQLEK 352 (486)
T ss_pred HHHHhhcc
Confidence 98866543
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.00061 Score=50.33 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC-CcHHHHHHHHHHhh
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG-RWEDVTRVRELMKE 493 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 493 (634)
+..+|..+...+...|++++|...++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888999999999999999999999999999999999999999 79999999888754
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.24 Score=48.88 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGAC 441 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 441 (634)
..+.+..+.-|...|....|.++-.+. . -|+..-|-..+.+|+..++|++-.++... +..++-|..++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F-----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF-----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc-----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH
Confidence 345566677777888888877764443 3 37888999999999999999998887654 33457788999999
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
...|+..+|..+..+ -.+..-+.+|.++|.|.+|.+.--+.+
T Consensus 248 ~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999998888776 122567889999999999988755543
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.20 E-value=0.33 Score=49.59 Aligned_cols=161 Identities=9% Similarity=0.054 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
..+|-..+..--+..-...|..+|.+..+. +..+ +.....+++.-++ .++.+.|.++|+.-.+.+ ..++.--..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf---~d~p~yv~~ 440 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF---GDSPEYVLK 440 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc---CCChHHHHH
Confidence 346777777777777788999999999998 7777 5566777776655 578899999999887754 445555677
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC----CchHHHHHHHH
Q 006705 405 VVDMLGRAGRVGEALEFIKNMP---FEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN----AGNYVILSNLY 475 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~ 475 (634)
.++-+...++-..|..+|++.- ..|| ...|..+|.--..-|+......+-++....-|.+ ...-..+++.|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 8888999999999999999871 2333 4689999999999999998888877766555521 12345677778
Q ss_pred hhcCCcHHHHHHHHHH
Q 006705 476 ASAGRWEDVTRVRELM 491 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m 491 (634)
.-.+.+..-..-++.|
T Consensus 521 ~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 521 GILDLYPCSLDELKFL 536 (656)
T ss_pred hhcccccccHHHHHhh
Confidence 7777766555555555
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.016 Score=61.31 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+.++.-.....|++++|...++++.+++|. ...|..++.+|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444433333445555555555555555553 44555555555555555555555555443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.18 E-value=0.0021 Score=64.91 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=84.9
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...|+.+++. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567789999999999999964 2346778888999999999999999999887 3334 56678888899999999
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+++|...++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999877666554443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.0044 Score=55.54 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334555666666667777776666654 11121 3456666677777777777777777777777777777777777
Q ss_pred HHhhcCC--------------cHHHHHHHHHHhh
Q 006705 474 LYASAGR--------------WEDVTRVRELMKE 493 (634)
Q Consensus 474 ~~~~~g~--------------~~~A~~~~~~m~~ 493 (634)
+|...|+ +++|.++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 7777665 4555555555543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.14 E-value=0.011 Score=52.97 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHY 402 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 402 (634)
....+..+...+...|++++|+..|++..+. ...|+ ...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHH
Confidence 4456677777788888888888888888765 32222 3567777777888888888888888887531 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
..+...|...|+...+..-++.. ...++.|...++++.+.+|++ |..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66777777777665554332221 012566788888888888875 5566666665554
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.0043 Score=55.35 Aligned_cols=94 Identities=14% Similarity=-0.082 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556677777777888888888888876 22222 346788888888899999999999999998888888888888
Q ss_pred HHHh-------hcCCcHHHHHHHHHH
Q 006705 473 NLYA-------SAGRWEDVTRVRELM 491 (634)
Q Consensus 473 ~~~~-------~~g~~~~A~~~~~~m 491 (634)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 777877666665544
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.13 E-value=0.0085 Score=47.55 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhhhccCCccCC
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKV-KPDSVTYLAVLSGCSHGG--------MEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
+-...|..+...+++.....+|+.+++. |+ .|+..+|+.+|.+..+.. .+-+.+.+|+.|... +++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~--~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN--KLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh--ccCCc
Confidence 3445666777779999999999999999 89 999999999999876532 345678899999986 89999
Q ss_pred hHHHHHHHHHHHH
Q 006705 399 IEHYGCVVDMLGR 411 (634)
Q Consensus 399 ~~~~~~li~~~~~ 411 (634)
.++|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.11 E-value=0.0012 Score=48.11 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=45.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...+...|++++|...++++++..|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888888888888888888887653
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.15 Score=48.40 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=43.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+..-|.+.|.+..|..-++.+.+.+++.+...+....++.+|.+.|..++|.+....+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455777788888888888888777666666777777888888888888877765543
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.0064 Score=61.59 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=90.0
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 006705 90 RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-R-----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFA 163 (634)
Q Consensus 90 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 163 (634)
+.+......+++......+++.+..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555566666666677778777766543 2 12345689999999999999999999888889999999999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006705 164 TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKA 207 (634)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (634)
.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888777666667766556666666
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.34 Score=47.31 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVK-----PDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IE 400 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~ 400 (634)
+..+...+.+.|++++|+++|++.... ... .+.. .|...+-++...|++..|...++......+++..+ ..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 445677788899999999999888764 222 1221 23333335566789999999999887543344333 44
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 006705 401 HYGCVVDMLGR--AGRVGEALEFIKNMP 426 (634)
Q Consensus 401 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 426 (634)
....|+.++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55667777753 456777888888874
No 170
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.58 Score=49.78 Aligned_cols=341 Identities=13% Similarity=0.082 Sum_probs=187.8
Q ss_pred HHHcCCCCCHhhHH-----HHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCC---ChHHHHHHHhhcC
Q 006705 49 MATLGLEMRFEEYD-----TLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE---CLSDARKMFDEMR 120 (634)
Q Consensus 49 m~~~g~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~ 120 (634)
+..-|+..+..-|. .++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+.++-+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 34456665555553 34555666777888888877764322122 566777777776653 3333444444555
Q ss_pred C--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch
Q 006705 121 E--RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTE----PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHI 194 (634)
Q Consensus 121 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 194 (634)
. ..-++|..+.+-.-..|+++-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-++.+.- +.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 5 45678888888888889999888887643222110 122334555666666677666666655554321 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHH--HH----hhcCCccChhhHHHHH
Q 006705 195 YVGSSLLDMYAKAGRIHEARGVFECLPE-RDVVSCTAIISGYAQLGLDEEAIELFR--KL----QVEGMISNYVTYASVL 267 (634)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~g~~p~~~t~~~ll 267 (634)
..+. ....+...|..+|.+... .|..+ +-..|-+ ++-.+++.-|. .. ...|..|+ ....-
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhhchhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 1111 111223334444443322 11111 1111222 22222222111 10 01222333 23334
Q ss_pred HHHhcccchHHHHHHH----------HHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 006705 268 TALSGLAALGHGKQVH----------SHVL-RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGY 336 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~----------~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 336 (634)
++|++........+.. +.+. +.|....--+.+--+.-+...|+..+|.++-.+.+-||-..|---+.++
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTAL 725 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 4454444322111111 1111 1122222223333444566779999999999999888888888889999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
+..+++++-+++-+.++ .+.-|.....+|.+.|+.++|.+++.... |.. -.+.+|.+.|++.
T Consensus 726 a~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~----~l~-------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVG----GLQ-------EKVKAYLRVGDVK 787 (829)
T ss_pred HhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccC----ChH-------HHHHHHHHhccHH
Confidence 99999887766655442 24557778889999999999998877654 222 4688899999999
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|.++--+
T Consensus 788 eAad~A~~ 795 (829)
T KOG2280|consen 788 EAADLAAE 795 (829)
T ss_pred HHHHHHHH
Confidence 98876544
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.029 Score=54.80 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----cChh-hHHHHHHHHhcccchHHHHHHHHHHHHcC--CCC--chhH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMI-----SNYV-TYASVLTALSGLAALGHGKQVHSHVLRFE--IPS--YVVL 297 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~--~~~~ 297 (634)
+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|+...|...++...... +.. ...+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 445556677777777777777776543221 1111 12223334445566666666666655432 222 1334
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHhhcCCCCh
Q 006705 298 QNSLIDMYSKC--GSLTYSRRVFDNMSERTV 326 (634)
Q Consensus 298 ~~~li~~~~~~--g~~~~A~~~f~~m~~~~~ 326 (634)
...|+.+|-.. ..++.|..-|+.+.+-|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 45555555432 235556666666655443
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.02 E-value=0.0096 Score=60.15 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
....+...|++++|+++|++..+. -+-+...|..+..++...|++++|...++.+.+.. +.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH
Confidence 345677889999999999999986 33456778888889999999999999999998642 3367789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFEPTAAILGSLLGAC 441 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 441 (634)
.|++++|+..|++. ...|+.......+.-|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999986 4456655544444333
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.01 E-value=0.0027 Score=49.02 Aligned_cols=80 Identities=13% Similarity=0.246 Sum_probs=52.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHH
Q 006705 339 HGMGREVVELFNLMREENKV-KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 416 (634)
.|++++|+.+|+++.+. .. .|+...+..+..++.+.|++++|..+++. . ...| +....-.+..+|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~-~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL-DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH-HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH-CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 57788888888888776 22 12344455577778888888888888877 2 2233 2344445577778888888
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88887764
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.01 E-value=0.01 Score=47.16 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCC-ccChhhHHHHHHHHhccc--------chHHHHHHHHHHHHcCCCCchhHHH
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGM-ISNYVTYASVLTALSGLA--------ALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++.....++..++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999887653 3445667888888888999999999
Q ss_pred HHHHHHHh
Q 006705 300 SLIDMYSK 307 (634)
Q Consensus 300 ~li~~~~~ 307 (634)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.00 E-value=0.011 Score=59.91 Aligned_cols=117 Identities=10% Similarity=0.029 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC----CChhhHH
Q 006705 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS--NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE----RDVVSCT 229 (634)
Q Consensus 156 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~ 229 (634)
+.+...+..++..+....+++.+..++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555555555555555555555444433 1111222334555555555555555555543322 4555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc
Q 006705 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
.||..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555545555555544444443
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.99 E-value=0.47 Score=47.48 Aligned_cols=422 Identities=13% Similarity=0.086 Sum_probs=229.2
Q ss_pred CCCccchhhhcccchhhhhcCCCCCC-----CChhhHHHhhhcCcHH--HHHHHHHHcCCCCCHhhHHHHHHH--HhccC
Q 006705 2 RRPKKQSRAFSSLTFTQQQLTVPSFP-----PNPQNLKTLCSNGQLT--KALIEMATLGLEMRFEEYDTLLNA--CVNQR 72 (634)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~--~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~ 72 (634)
+..++.+++-..|.+.-+......+- --.++|++|..+.--. ..+....+ ..| ...|..+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHHhh
Confidence 44566777777777754333222111 1246777776654222 22333332 233 3445555554 34677
Q ss_pred CchHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHcCCChHHHHHHHhhcCC--------CCcchHHHH
Q 006705 73 TLRGGQRVHAHMIKT--CYR------------PPVYLRTRLIVFYNKCECLSDARKMFDEMRE--------RNVVSWTAM 130 (634)
Q Consensus 73 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 130 (634)
....|.+.+...... +.. +|...-+..+..+...|++.+++.++++|.. =|+.+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888999888877665 322 2333446667888899999999999998864 377788875
Q ss_pred HHHHHhC--------CC-------hhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcc--CCcHHHHHHHHHHHH
Q 006705 131 ISAYSQK--------AH-------SFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGA--FGFELGKQIHSLIIK 187 (634)
Q Consensus 131 i~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~ 187 (634)
+-.+.++ .. ++.++-...+|... .+.|....+..++....-. ..+.--.+++.....
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 5444432 11 22233333333321 2445555555555544332 223334455555544
Q ss_pred hCCCCch-HHHHHHHHHHHhcCCHHHHHHHHccCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Q 006705 188 SNFESHI-YVGSSLLDMYAKAGRIHEARGVFECLP--------ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 188 ~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 258 (634)
.-+.|+- .+...|+.-+.+ +.+++..+-+.+. ++=+.++..++...++.++..+|-+.+.-+..- .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 4455543 334455555554 4455544443332 233457888888899999999998887776543 34
Q ss_pred ChhhHHH-------HHHHHh-cc---cchHHHHHHHHHHHHcCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhhcCC
Q 006705 259 NYVTYAS-------VLTALS-GL---AALGHGKQVHSHVLRFEIPSYVVLQNSLI---DMYSKCGS-LTYSRRVFDNMSE 323 (634)
Q Consensus 259 ~~~t~~~-------ll~~~~-~~---~~~~~a~~i~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~f~~m~~ 323 (634)
+...-.- +-+..+ .- .++..-..++..+...++..- ..-.-|+ .-+-+.|. -++|.++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3321111 111111 11 112222334444443332211 1111222 22344454 6777777776653
Q ss_pred ---CChhhHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHH
Q 006705 324 ---RTVISWNAML----VGYSKH---GMGREVVELFNLMREENKVKPDSV----TYLAVLSG--CSHGGMEDRGLAVFHE 387 (634)
Q Consensus 324 ---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~ 387 (634)
-|...-|... ..|.+. ..+.+-+.+-+-+.+. |++|-.+ .-+.+.+| +...|++.++.-+-.-
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444433322 223221 1233333443444455 7777443 23333333 4557888887665555
Q ss_pred hhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 388 IVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 388 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
+. .+.|++.+|..+.-.+....++++|..++..+| |+..+|++-+
T Consensus 488 L~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 488 LT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 54 678999999998888888999999999999986 5766666543
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.46 Score=46.90 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
+.-|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..+++++-.++... . -.++-|-.++.+|.+.|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C----CCCCChHHHHHHHHHCCCH
Confidence 33455566788899999998888888999999999999999999877665432 1 1347788888999999999
Q ss_pred HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006705 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLG 439 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 439 (634)
.+|..+...+. +..-+.+|.++|.+.+|.+.-.+.. |......+..
T Consensus 254 ~eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 254 KEASKYIPKIP------------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 99888876632 2446788899999999887765543 4444444433
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.75 Score=48.99 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 347 ELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 347 ~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
.+.+.+..+.|..-...|.+-.+.-+...|...+|.++-.+.. -||...|-.-+.+++..+++++-+++-+++.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 3444444443444555666777777888898888888766543 5788888888899999999999888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 427 FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 427 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
.+.-|.-+..+|.+.|+.++|..++.+.-. +.-.+.+|.+.|++.+|.++--+
T Consensus 743 ---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 245677788999999999999887765432 22578899999999998876443
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.021 Score=49.22 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=77.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
...-+-..|++++|..+|+-+ -..-+..-|..|..+|...++++.|...+..+..++++|+.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455789999999999976 113456678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006705 483 DVTRVRELMKE 493 (634)
Q Consensus 483 ~A~~~~~~m~~ 493 (634)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.0086 Score=58.26 Aligned_cols=124 Identities=10% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS---WNAMLVG-YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+|-.++...-+.+.++.|+.+|.+..+....+ |-..... |...++.+.|..+|+...+. +..+...+...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 44445555555555555555555554332222 2222222 22234455577777776664 445555566666666
Q ss_pred hccCcHHHHHHHHHHhhhccCCccC---ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEP---EIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+.++.+.++.+|+..... +.+ ....|...++.=.+.|+++.+.++.+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777642 222 2246777777777777777777777665
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.82 E-value=0.15 Score=44.50 Aligned_cols=134 Identities=7% Similarity=0.058 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HH
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT---AA 432 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~ 432 (634)
.+.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...++.+ ..+|+ ..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34677777777888888888888888888888762 34567777778888888888888888888875 22221 12
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.-.+...+...|.++.|+..++.+..--|. +..-......+.++|+.+++..-+..+.+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344557888889999999999999888876 56666777888999998888766555543
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.0028 Score=46.09 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556666666666666665 2233 34456666666667777777777777777766664
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.004 Score=58.39 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYN 446 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 446 (634)
.-..+.+++.+|+..|...++ +.| |..-|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 347788999999999999984 455 5566666788899999999998877665 44444 4578889999999999
Q ss_pred chHHHHHHHHHhccCCCCCc
Q 006705 447 VDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~ 466 (634)
+++|.+.++++++++|++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHHhhhccCCCcHH
Confidence 99999999999999999863
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.043 Score=45.26 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=66.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 409 (634)
+..++-..|+.++|+.+|++.... |..... ..+..+.+++...|++++|..+++.....+++-+-+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445677789999999999998887 766553 46677778888999999999999988865311111233333445567
Q ss_pred HHcCCHHHHHHHHHhC
Q 006705 410 GRAGRVGEALEFIKNM 425 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m 425 (634)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7889999988877543
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0014 Score=48.13 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=42.5
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888877654
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.0038 Score=46.62 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+...++++.|..+++.+++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999988755
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=1.1 Score=47.37 Aligned_cols=201 Identities=11% Similarity=0.132 Sum_probs=110.3
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHH---------hCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcc
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK---------TCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVV 125 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 125 (634)
.|.+..|..+..+....-+++.|.+.|-.... .+--.+.....+=|.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 45566666666555555555555555433211 11011111222223333 4899999999999888775
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLL 201 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 201 (634)
-|..+.+.|++-...++++. -|-..| ...|..+...++....++.|.+.+.+--. ....+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35566667777666555532 111111 23566666666666667777666654311 11255
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHH
Q 006705 202 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281 (634)
Q Consensus 202 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (634)
.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+--. | ...+.+|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666553 33444566677777777777665533211 1 234556666666666655
Q ss_pred HHH
Q 006705 282 VHS 284 (634)
Q Consensus 282 i~~ 284 (634)
+-.
T Consensus 900 laq 902 (1189)
T KOG2041|consen 900 LAQ 902 (1189)
T ss_pred HHH
Confidence 543
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.02 Score=53.93 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCC
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 414 (634)
+.+.+++.+|+..|.+..+. .+-|.+-|..=..+|++.|.++.|++-.+..+. +.| ....|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 55677888888888888764 334556666777788888888888877776663 344 36678888888888888
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 006705 415 VGEALEFIKNM-PFEPTAAILGSLL 438 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~p~~~~~~~ll 438 (634)
+++|++.|++. .+.|+..+|-+=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888775 6677766665444
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.70 E-value=0.055 Score=46.41 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQVEGMISN-YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
-++...+.+.|++++|..+|+.+..- .|. ..-|-.+-.+|-..|++.+|...+....... +.|+..+-.+..+|.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 34444455566666666666655543 232 2233344444445555666666665555554 3445555555556666
Q ss_pred cCCHHHHHHHHhh
Q 006705 308 CGSLTYSRRVFDN 320 (634)
Q Consensus 308 ~g~~~~A~~~f~~ 320 (634)
.|+.+.|++-|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 6666666666554
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.63 E-value=0.015 Score=52.29 Aligned_cols=88 Identities=9% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc----------------CCcHHHHH
Q 006705 122 RNVVSWTAMISAYSQK-----AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA----------------FGFELGKQ 180 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 180 (634)
+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444444444444332 33333334444444445555555555555443321 23456778
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888876654
No 191
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.63 E-value=0.037 Score=49.27 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEP--NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+..+.+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666677777777776665432222 12345555555666666666666666665542 222333444444
Q ss_pred HHH
Q 006705 203 MYA 205 (634)
Q Consensus 203 ~y~ 205 (634)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.12 Score=47.65 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc-----hHHHHHHHH
Q 006705 128 TAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESH-----IYVGSSLLD 202 (634)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~ 202 (634)
+.++..+.-.|.+.-.+.++.+..+...+.+......+.+...+.||.+.|...++.+.+..-..+ ..+.-....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444445555555566666665554444555555555555566666666666665554322222 222222333
Q ss_pred HHHhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 203 MYAKAGRIHEARGVFECLPER---DVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+..+|++.++.|+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455566666666555442 3334443333333345566666666666553
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.59 E-value=0.0012 Score=40.59 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHH
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578899999999999999999999999999863
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.59 E-value=0.35 Score=44.51 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+|.-|-......+|...+..+... + ...-..+..-|.+.|.+..|..-++.+++.+++.+........|+.+
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~--l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR--L---AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH--H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344555555555555665555444432 0 01112345567788888888888888887764444445566777778
Q ss_pred HHHcCCHHHHH
Q 006705 409 LGRAGRVGEAL 419 (634)
Q Consensus 409 ~~~~g~~~~A~ 419 (634)
|.+.|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 88888777543
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.57 E-value=0.011 Score=43.35 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=34.3
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSL 437 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 437 (634)
..|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666666431 225556666666666666666666666666 334554444333
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.055 Score=51.28 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=83.7
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC---CchHHHHHHHHHhccCCCCCchHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHY---NVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+ .++...+..+..++.... ...++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 558899999999999999999999999886 22 345566666665554333 3457889999999999999999999
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 471 LSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 471 l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
|.-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987654
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.37 Score=42.20 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=27.2
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
|+...-..+..+....|+..+|...+.+...--+-.|..+.-.+.++....++...|...+++
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333344444444444444444444444333334444444444444444444444444443
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.53 E-value=0.027 Score=50.69 Aligned_cols=97 Identities=15% Similarity=0.292 Sum_probs=75.6
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-----------
Q 006705 315 RRVFDNM--SERTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG----------- 376 (634)
Q Consensus 315 ~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g----------- 376 (634)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+- |+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 4556665 456778888888887754 5666667778888888 89999999999998875522
Q ss_pred -----cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 377 -----MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 377 -----~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
.-+-|++++++|... |+-||.+++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~--gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENN--GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHhccccH
Confidence 235688999999985 999999999999999987664
No 199
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.51 E-value=0.89 Score=51.08 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=92.4
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 208 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 208 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
++++.|+.-+..+. ...|+-.+.---+.|.+++|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 45555555554443 223444444444556666666554 6777777766666543 111
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH--H
Q 006705 288 RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT--Y 365 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t--~ 365 (634)
+.. . ++--.-+|.++|+.++|.+. |...|++.+|+.+..+|.. .-|... -
T Consensus 951 ~~~-~-----~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~----~~de~~~~a 1002 (1265)
T KOG1920|consen 951 EEL-M-----SDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE----GKDELVILA 1002 (1265)
T ss_pred Hhc-c-----ccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC----CHHHHHHHH
Confidence 111 1 11223357888888888654 5567888888888877743 223322 2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
-.|.+-+...++.-+|-++..+.... ..--+..|++...+++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd----------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD----------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC----------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 45666677778877777776665532 223456677788888888877665
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.46 E-value=0.076 Score=43.77 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccCh--hhHHHHHHHHhcccchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNY--VTYASVLTALSGLAALGHGKQVHSHVLRFEIP--SYVVLQNSLIDMYS 306 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~~~ 306 (634)
+..++-..|+.++|+.+|++....|...+. ..+..+-+++...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566677888888888887777655442 34445556666777777777777766654211 01222222233445
Q ss_pred hcCCHHHHHHHHhhc
Q 006705 307 KCGSLTYSRRVFDNM 321 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m 321 (634)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.41 E-value=0.0073 Score=44.45 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 462 (634)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456667777777777777777777765 2223 4556667777777777 67777777777777766
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=1 Score=44.65 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=47.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHH
Q 006705 335 GYSKHGMGREVVELFNLMREEN--KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGR 411 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 411 (634)
-..++|++.+|.+.|.+..... .++|+...|.....+..+.|+.++|+.--+...+ +.|. ...|..-..++.-
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHH
Confidence 3456777777777777765320 2333444455555566677777777766665552 2221 2222222333444
Q ss_pred cCCHHHHHHHHHhC
Q 006705 412 AGRVGEALEFIKNM 425 (634)
Q Consensus 412 ~g~~~~A~~~~~~m 425 (634)
.+.|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777766654
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.31 E-value=1.3 Score=43.67 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=159.9
Q ss_pred hHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--ccCCcHHHHHHHHHHHHhCCCCchHH--HHH
Q 006705 126 SWTAMISAYSQ--KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCA--GAFGFELGKQIHSLIIKSNFESHIYV--GSS 199 (634)
Q Consensus 126 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 199 (634)
-|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..+|.+-+ -.|+.+.|++-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555443 35555555554443221 3344455555555433 347777777777777531 22111 111
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccChh--hHHHHHHHHhc-
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEG-MISNYV--TYASVLTALSG- 272 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 272 (634)
|.-.--+.|..+.|+..-+.... | -...|.+.+...+..|+++.|+++++.-+... +.+|.. .-..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22222345666666665554432 2 23467777778888888888888877665432 333332 12223322211
Q ss_pred --ccchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 273 --LAALGHGKQVHSHVLRFEIPSYVVL-QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 273 --~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+.....- +...|.+..-.+.++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHH
Confidence 12344455544444443 333221 11234567888888888888888764322221 223344444445566655
Q ss_pred HHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 006705 350 NLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR-AGRVGEALEFIKNM 425 (634)
Q Consensus 350 ~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 425 (634)
++..+....+||. .+...+..+-...|++..|..--+... ...|....|-.|.+.-.. .|+-.++...+.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~----r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA----REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh----hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5554432456665 566677777888888888877666665 457888888888877654 48888888888776
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.27 E-value=0.35 Score=48.19 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=79.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---C----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSER---T----VISWNAMLVGYSK---HGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
|+-.|-...+++...++.+.+... + ...--...-++.+ .|+.++|++++..+... ...++..||..+..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHHH
Confidence 333466777777777777777643 1 1111223445556 77888888888885555 45667777766655
Q ss_pred HHh---------ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHH----HHHH---HhC-------CC
Q 006705 371 GCS---------HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA----LEFI---KNM-------PF 427 (634)
Q Consensus 371 a~~---------~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m-------~~ 427 (634)
.|- .....++|...|.+.- .+.|+..+--.++.++...|.-.+. .++- ..+ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF----e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF----EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH----cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 432 1223566666666554 3344443333333334444432211 1111 000 01
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 428 EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
..|-..+.+++.++.-.|+.+.|.+..+++.++.|+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 123333345555555555555555555555555443
No 205
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.27 E-value=0.17 Score=53.64 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAI 433 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 433 (634)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 445566555555566888888888888884 3567788888888888888888888888764 33444333
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.27 E-value=0.5 Score=49.25 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=106.9
Q ss_pred HhhHHHHHHHHhccCCchHHHHH--HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRV--HAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYS 135 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 135 (634)
.-.++..=+||.+.+++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~----------------- 657 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR----------------- 657 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH-----------------
Confidence 34456666777777776554444 345666665566543 33445566888888888865
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARG 215 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 215 (634)
+|....|+++|.+|+-- -..+-+...|+.++-+.+.+.-.+.. .+..--.+...++...|+.++|..
T Consensus 658 -~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 658 -SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred -cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhh
Confidence 45566677777766531 12233344454444443332221110 000001123345555666666655
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCch
Q 006705 216 VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYV 295 (634)
Q Consensus 216 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~ 295 (634)
+. ..+|-.+-+.++-+++-. .+..+...+..-+-+...+..|.++|..+-+.
T Consensus 725 i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 725 IC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred hh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 42 233333444444333322 23334444444445555666666776655432
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE 323 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~ 323 (634)
.+++++....+++.+|..+-++.++
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCcc
Confidence 3567777777788888777777765
No 207
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.24 E-value=2.4 Score=46.29 Aligned_cols=193 Identities=12% Similarity=0.094 Sum_probs=110.1
Q ss_pred HHHHHHHH--hccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHHh
Q 006705 61 YDTLLNAC--VNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQ 136 (634)
Q Consensus 61 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 136 (634)
|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...+..++|..+++...+ |+..-...+..+|++
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 55555554 4677788888777777655533 777788888888888888888888888776 444444455566777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-C---------cHHHHHHHHHHHHhC-CCCchHHHHHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF-G---------FELGKQIHSLIIKSN-FESHIYVGSSLLDMYA 205 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~ 205 (634)
.+.+.+-.+.--+|-+ ..+-+.+.|-++++.....- . +..|....+.+++.+ -.....=.-.-.....
T Consensus 123 ~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 6666543222222222 12334556655655543321 1 223444455554433 1111111111223344
Q ss_pred hcCCHHHHHHHHc-----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 006705 206 KAGRIHEARGVFE-----CLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEG 255 (634)
Q Consensus 206 ~~g~~~~A~~~~~-----~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 255 (634)
..|.+++|..++. ....-+...-|--+..+...+++.+..++-.++...|
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5677888888773 2222334444455666777788888888777777765
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.20 E-value=0.067 Score=51.16 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
|..-+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+++-+.....+-.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 333333334456666666666666654 2332 244455555666666666666666666543222222333444
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m 425 (634)
++..|...|+.++|.+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444555555555555443
No 209
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.11 E-value=0.39 Score=39.43 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.-.|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+ .+. .||++.
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF-Dis--------------~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF-DIS--------------KCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS--GG--------------G-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhc-Cch--------------hhcchH
Confidence 3456677777777777665 233444444433333334444555555554432 222 345555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
.....+-.+. .+......-+......|..++-..+...+.+-+..+|....-++.+|.+.|...++.+++++..++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 5555555543 24445556677888889888888888888754444578889999999999999999999999999998
Q ss_pred c
Q 006705 497 T 497 (634)
Q Consensus 497 ~ 497 (634)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 210
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.11 E-value=0.34 Score=45.91 Aligned_cols=175 Identities=14% Similarity=0.046 Sum_probs=99.9
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCC--Ch-hh---HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc-
Q 006705 200 LLDMYAKAGRIHEARGVFECLPER--DV-VS---CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG- 272 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~--~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 272 (634)
....+.+.|++++|.+.|+++... +. .. .-.++.+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877542 21 11 223556777888888888888888775322222334333433321
Q ss_pred -c---------------cc---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH
Q 006705 273 -L---------------AA---LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAML 333 (634)
Q Consensus 273 -~---------------~~---~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 333 (634)
. .+ ...|...++.++ +-|=...-..+|...+..+...=...--.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 112223333333 3333333344444433333222111112345
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 334 VGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.-|.+.|.+..|+.-|+.+.+... .+........+..+|...|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568899999999999999988632 22233566778889999999999988776654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.26 Score=45.60 Aligned_cols=167 Identities=6% Similarity=-0.049 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CC--------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHH
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE--RD--------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 266 (634)
+++|+..|.-...+++-...|+.-.. .. ....+.++..+.-.|.+.-.+.++.+..+...+.+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555443222 12 233456666677777888888888888876555566667777
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQN-----SLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSK 338 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 338 (634)
.+.-.+.|+.+.|...++.+.+..-..|....+ .....|.-..++..|...|+++... |++.-|.-.-.+.-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777778888888888888776653333333333 3333455667788888888777643 45555555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
.|+..+|++..+.|... .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~---~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ---DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc---CCccchhh
Confidence 78888888888888764 45544443
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.07 E-value=0.021 Score=57.42 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|...+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 5667777888888888888888888774 555653 34777778888888888888888888776322 222111
Q ss_pred H--HHhhcCCcHHHHHHHHHHhhCCC
Q 006705 473 N--LYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 473 ~--~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
. .+......++..++++....-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11223344566677777766665
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.89 E-value=0.13 Score=49.11 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSL 437 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l 437 (634)
..|...+....+.|++++|...|+.+.+.++.-.-....+-.+...|...|++++|...|+.+ ...|+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344444444455688888888888888764222112346667777888888888888887776 11122 3344445
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
...+...|+.+.|...++.+.+..|++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 556667777777777777777777764
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.1 Score=45.20 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=69.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
....++.+.+...+..+...+.|- -|+... ..-......-++++ -......++..+...|+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345567777777777777665331 112111 01111122222222 123455667778889999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
....+.+...+|-+...|..++.+|...|+..+|.++++.+.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.82 E-value=0.11 Score=43.24 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
..|+..+..+++.+|+..|++..|.++.+...+.| +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y-~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY-PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 44555555555555555555555555555555555 34444444444443
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.77 E-value=0.12 Score=42.98 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=42.5
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~ 446 (634)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+....+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999998875 555568899998865544433
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.19 Score=47.71 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---ccCcHHHHHHHHHHhhhccCCccCChHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS---HGGMEDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
|...|-.|...|...|+++.|..-|.+..+. -.+|...+..+..++. ....-.++..+|+++.+. -+-++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHH
Confidence 6677888888888888888888888777765 2333444444444432 223456677777777753 1335556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLL 438 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 438 (634)
...|...+...|++.+|...|+.| ..-|....|.+++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 666666777777777777777776 2233444455555
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.35 E-value=0.084 Score=51.75 Aligned_cols=129 Identities=17% Similarity=0.007 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCC
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVD---CKDGF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-------PF-EPT 430 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~ 430 (634)
..|..|-..|.-.|+++.|+..++.-.+ .+ |- ...-..+..|.+++.-.|+++.|.+.++.. +. .-.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3466666666777889988877664332 12 21 123456777888888889999998888764 11 112
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhcc----C--CCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEI----E--PENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 431 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.-+..+|.+.|....+++.|..++.+-+.+ + .....++.+|.++|...|..+.|..+.+.-.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 335567778888888888887766554332 1 1135678899999999999998888776553
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.35 E-value=0.05 Score=40.41 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 407 DMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...++++.+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4556666666666666665 2222 3445555666666777777777777777777776543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.33 E-value=0.99 Score=41.53 Aligned_cols=173 Identities=12% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 303 DMYSKCGSLTYSRRVFDNMSE--RT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+...-.|. ..+...+.+.+.-.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHH
Confidence 344556666666666666652 21 123444556666666666666666666654211121 12222222221111
Q ss_pred cHHHHHHHHHHhhhccCCcc---CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFE---PEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAIL--GSLLGACRVHYNVDIGE 451 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~ 451 (634)
..... + .... ... --...+..++.-|-.+....+|...+..+. +...- -.+..-|.+.|.+..|.
T Consensus 92 ~~~~~---~--~~~~--D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 92 QIPGI---L--RSDR--DQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHH---H---TT-----HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred hCccc---h--hccc--ChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHH
Confidence 11000 0 0000 000 001223333333434444444444433331 00000 11335678888899998
Q ss_pred HHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHH
Q 006705 452 FVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 452 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 486 (634)
.-++.+++.-|+.+ .+...++..|.+.|..+.|..
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88898888888743 345678888999998775543
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.31 E-value=0.027 Score=37.01 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+|..+..++...|++++|+.+++++++..|+|+..+..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 5666777888888888888888888888888877666654
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.22 E-value=3.9 Score=41.17 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENK-VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
.|...+..-.+....+.|..+|-+..+. | +.++...+++++.-++ .|+...|..+|+.-... ++.+..--+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 4445555555555555666666666665 4 4455555555554443 35555666666554432 122222223444
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 407 DMLGRAGRVGEALEFIKNM--PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 5555566666666666533 11112 335555665555556665555555555555554
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.03 E-value=4 Score=40.32 Aligned_cols=283 Identities=14% Similarity=0.080 Sum_probs=187.7
Q ss_pred HHHHHHHHH--cCCChHHHHHHHhhcCC---CCcchHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCh--hhHHHHH
Q 006705 96 RTRLIVFYN--KCECLSDARKMFDEMRE---RNVVSWTAMISA--YSQKAHSFEALNLFIRMLRSDTEPNE--FTFATVL 166 (634)
Q Consensus 96 ~~~li~~y~--~~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 166 (634)
|.+|-.++. -.|+-..|++.-.+... .|....--|+.+ -.-.|++++|.+-|+.|... |.. .-+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444443 35777888877665442 344444444433 33469999999999999762 221 1233344
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC-----CCChh--hHHHHHHHHH---
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP-----ERDVV--SCTAIISGYA--- 236 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~--- 236 (634)
-..-+.|+.+.|.++-+..-..- +.-...+.+++...+..|+++.|+++.+.-. ++|+. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44567788888888887776543 3345677889999999999999999998643 34443 1222332221
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS- 314 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A- 314 (634)
-..+...|...-.+.. .+.||..- -.....++.+.|++.++-.+++.+-+....|++ + ++..+.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHH
Confidence 1234555555444443 35677653 334456788999999999999999988655543 3 33446777774332
Q ss_pred ---HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhhh
Q 006705 315 ---RRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 315 ---~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~ 390 (634)
.+-+..|+..|..+--+...+-...|++..|..--+.... ..|....|..+.+.- ...|+-.++.+.+.+.++
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2346778888889988899999999999888777666654 478888888777764 455999999999988886
Q ss_pred c
Q 006705 391 C 391 (634)
Q Consensus 391 ~ 391 (634)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.97 E-value=0.035 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+|+.+...|.+.|++++|++.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555555555555555554
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.90 E-value=0.13 Score=50.52 Aligned_cols=256 Identities=12% Similarity=0.045 Sum_probs=141.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHH--Hh--CCC-CchHHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEF----TFATVLTSCAGAFGFELGKQIHSLII--KS--NFE-SHIYVGSSLLDMY 204 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~y 204 (634)
+++.|+....+.+|+..++.|.. |.. .|..+-.+|.-.+++++|.++|..=+ .. |-. -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 56777777777888777776642 333 34445556666777777777764321 11 100 0111122233444
Q ss_pred HhcCCHHHHHHHHccC-------CCC--ChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHh---
Q 006705 205 AKAGRIHEARGVFECL-------PER--DVVSCTAIISGYAQLGL--------------------DEEAIELFRKLQ--- 252 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~m-------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--- 252 (634)
--.|.+++|.-+-.+- ..+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554432211 110 11233334444544332 123334433221
Q ss_pred -hcCCc-cChhhHHHHHHHHhcccchHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---
Q 006705 253 -VEGMI-SNYVTYASVLTALSGLAALGHGKQVHSHVLR----FEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS--- 322 (634)
Q Consensus 253 -~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--- 322 (634)
+.|-. .--..|..+-+.|.-+|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11110 1112455555556667889999888875432 221 1223456667788888899999988887543
Q ss_pred ----CCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 323 ----ERTV--ISWNAMLVGYSKHGMGREVVELFNLMRE----ENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 323 ----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.+.+ .+.-+|...|.-...+++|+.++.+-.. .+...-....+-+|..++...|..++|+.+.....+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333 3455677777777888888888765332 101222346788888899999999988877665554
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.24 Score=48.96 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++..|..++.+.+++..|.....+.++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355667778889999999999999999999999999999999999999999999999999754
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.23 E-value=7.1 Score=39.55 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChh-------hHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMS--ERTVI-------SWNAMLVGYS----KHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
..+..++....+.++...|.+.+.-+. +|+.. +-.++-+..+ ..-+...-+.+|+..... ..|.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~---DiDr 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY---DIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cccH
Confidence 345566666677777777776665443 23221 1111112222 112233445566665544 2333
Q ss_pred HH-HHHHHHH---HhccCc-HHHHHHHHHHhhhccCCccC-ChHHHHHHHH----HHHH---cCCHH---HHHHHHHhCC
Q 006705 363 VT-YLAVLSG---CSHGGM-EDRGLAVFHEIVDCKDGFEP-EIEHYGCVVD----MLGR---AGRVG---EALEFIKNMP 426 (634)
Q Consensus 363 ~t-~~~ll~a---~~~~g~-~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~----~~~~---~g~~~---~A~~~~~~m~ 426 (634)
.- ...++.+ +-+.|. -++|..+++.+.+ +.| |...-|.+.. .|.. ...+. .-..++++.+
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~----ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ----FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 22 2222222 333444 7788888888874 333 3333332221 1211 11112 2233344444
Q ss_pred CCCC----HHHHHHHHHH--HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 FEPT----AAILGSLLGA--CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~~p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+.|- ...-|.|..| ...+|++..+.....-+.++.| ++.+|..++-.+....++++|..++..+.
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4432 2334444433 5678999999988899999999 58999999999999999999999998773
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=1.2 Score=42.78 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=84.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH----HHcCC
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML----GRAGR 414 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~ 414 (634)
.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++... ..|+...|..+=.+| ..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 45666666666666664 4556566666666677777776666666666642 244554444433333 36677
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC----CCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 415 VGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE----NAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
+++|++.-++. .+. -|...-.++.......++.++|.+.+.+-...-.. -...|-...-.|...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777776665 332 23444455556666667777776665543322111 0123334444555567777777777
Q ss_pred HHHh
Q 006705 489 ELMK 492 (634)
Q Consensus 489 ~~m~ 492 (634)
+.=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.18 E-value=3 Score=35.59 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.++..+...+.......+++.+.+.+ +.+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44444544555555556666555554 34555666666666654
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.47 Score=44.41 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=80.9
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc--------
Q 006705 313 YSRRVFDNMS--ERTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM-------- 377 (634)
Q Consensus 313 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-------- 377 (634)
..++.|.... ++|-.+|-+++..+... +..+=....++.|.+. |+.-|..+|..||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456677776 67888999999888764 4566666778889998 999999999999998765432
Q ss_pred --------HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 378 --------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 378 --------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
-+-+..++++|... |+.||.++-..|++++++.+..-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h--GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH--GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc--CCCCchHHHHHHHHHhccccccH
Confidence 23478999999986 99999999999999999888643
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.11 E-value=0.45 Score=41.05 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
..++..+...|++++|+.+.+.+... -+-|...+..++.++...|+...|.++|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444555556666666666655554 2334555666666666666666665555544
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.07 E-value=0.059 Score=40.66 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEI----EPE---NAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.+++.+...+...|++++|...+++++++ +++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999999888754 222 24567889999999999999999998864
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.04 E-value=0.93 Score=44.05 Aligned_cols=165 Identities=10% Similarity=0.036 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC-cc--CChH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG-FE--PEIE 400 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~--p~~~ 400 (634)
.+|-.+..++-+.-++.+++.+-+.-....|..|.. ....++-.|....+-++++++.|+...+--.. -. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455556666666666666666655544433444421 23344566677777888888888877653101 11 1356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHH-----HHHHHHHhcCCchHHHHHHHHHhccC--CCCC-
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-------PFEPTAAILG-----SLLGACRVHYNVDIGEFVGQRLMEIE--PENA- 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~- 465 (634)
+|..|...|++..++++|.-+..+. ....=..-|. -|.-+++..|..-.|.+..+++.++. ..|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888999999999988876655443 2221111222 34467888898888888777766532 2222
Q ss_pred ---chHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 466 ---GNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 466 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
....++.++|-..|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33457899999999988887766654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.94 E-value=0.33 Score=49.19 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI----EHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 360 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+...++.+..+|.+.|++++|...|+..++ +.|+. ..|..+..+|.+.|++++|++.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3457888899999999999999999999884 45663 35888999999999999999999886
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.94 E-value=0.4 Score=44.82 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=67.2
Q ss_pred hHHHHHHHhhcC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC--------
Q 006705 109 LSDARKMFDEMR--ERNVVSWTAMISAYSQK-----AHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF-------- 173 (634)
Q Consensus 109 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 173 (634)
+-..++.|...+ ++|-.+|-+++..|... +..+=.-..++.|.+-|+.-|..+|..||..+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334456666666 57777888888777654 444545556777888888888888888887664432
Q ss_pred --------CcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 174 --------GFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 174 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
+-+-+..++++|...|+.||-.+-..|++++++.|.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456667777777777777777777777766654
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.81 E-value=3.6 Score=35.08 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChh
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSF 141 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 141 (634)
..++..+...+........++.+.+.+ ..+....|.++..|++.. ..+....++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 445555555556666666666666655 345556666666666542 2233333331 122233333444444444444
Q ss_pred HHHHHHHH
Q 006705 142 EALNLFIR 149 (634)
Q Consensus 142 ~A~~~~~~ 149 (634)
++.-++..
T Consensus 87 ~~~~l~~k 94 (140)
T smart00299 87 EAVELYKK 94 (140)
T ss_pred HHHHHHHh
Confidence 44444443
No 237
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=12 Score=40.62 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 67 ACVNQRTLRGGQRVHAHMIKTCYRP---PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
...+.+.+++|..+-.... |..+ -..++...|+.+.-.|++++|-...-.|...+..-|---+.-+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3344445555555444332 2233 3456777888888888888888888888888888888777777777765543
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
..+ +.....+.+...|..+|..+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 332 2222122344556666666655
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.75 E-value=5 Score=40.24 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhcCCC-Cc-c-----hHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006705 98 RLIVFYNKCECLSDARKMFDEMRER-NV-V-----SWTAMISAYSQ---KAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167 (634)
Q Consensus 98 ~li~~y~~~g~~~~A~~~~~~~~~~-~~-~-----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 167 (634)
.|+-.|-...+++...++++.++.. +. . .---..-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444687888999999999888763 11 1 11122334555 7889999999988766666677778776665
Q ss_pred HH
Q 006705 168 SC 169 (634)
Q Consensus 168 ~~ 169 (634)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.65 E-value=5.7 Score=36.50 Aligned_cols=196 Identities=18% Similarity=0.126 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS-----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
..........+...+.+..+...+.... ......+..+...+...+.+.++.+.+...... ...+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCc-chHHHHHH
Confidence 3445555556666666666666655543 223445555555666666677777777766653 2222 11122222
Q ss_pred H-HHhccCcHHHHHHHHHHhhhccCCc--cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 006705 370 S-GCSHGGMEDRGLAVFHEIVDCKDGF--EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT--AAILGSLLGACRV 443 (634)
Q Consensus 370 ~-a~~~~g~~~~a~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 443 (634)
. ++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 137 LGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 2 566777777777777776432 11 122333444444456677777777777765 22223 4566666677777
Q ss_pred cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 444 HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777877777777777764455556666666666777777777776543
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.50 E-value=12 Score=39.90 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhCCChhHHHHH
Q 006705 72 RTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER-----NVVSWTAMISAYSQKAHSFEALNL 146 (634)
Q Consensus 72 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 146 (634)
|.+++|.+++-.+-+++ --|.++.+.|++-...+++..-... -..+|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766665443 2356666677776666666542221 123455555555555555555555
Q ss_pred HH
Q 006705 147 FI 148 (634)
Q Consensus 147 ~~ 148 (634)
|.
T Consensus 819 Y~ 820 (1189)
T KOG2041|consen 819 YS 820 (1189)
T ss_pred HH
Confidence 44
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.35 E-value=1.4 Score=45.74 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=83.2
Q ss_pred HHHhcCChHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 335 GYSKHGMGREVVELFN--LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~--~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
...-.|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-.. -.++..++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rFeLAl~l 331 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDPDH--------------RFELALQL 331 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------HhHHHHhc
Confidence 3455677777766664 2221 122 33466677777788888888776443322 24556688
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 413 GRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 413 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
|+++.|.++.++.. +...|..|.......|+.+.|+..+++ ..-+..|.-+|...|+.+.-.++.+...
T Consensus 332 g~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k--------~~d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK--------AKDFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH--------CT-HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh--------hcCccccHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888877663 777888888888888888888888887 3456678888888888877777776666
Q ss_pred hCC
Q 006705 493 EKA 495 (634)
Q Consensus 493 ~~~ 495 (634)
.+|
T Consensus 401 ~~~ 403 (443)
T PF04053_consen 401 ERG 403 (443)
T ss_dssp HTT
T ss_pred Hcc
Confidence 554
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.31 E-value=0.74 Score=37.76 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC----chHHHHHHHHhhcCCc
Q 006705 408 MLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA----GNYVILSNLYASAGRW 481 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 481 (634)
+++..|+++.|++.|.+. . .+.....||.-..+++..|+.++|..-+++++++..+.. .+|+--+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777664 1 123556677777777777777777777777776543322 3466677778888888
Q ss_pred HHHHHHHHHHhhCCC
Q 006705 482 EDVTRVRELMKEKAV 496 (634)
Q Consensus 482 ~~A~~~~~~m~~~~~ 496 (634)
+.|..=|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888776654
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.19 E-value=5.3 Score=41.53 Aligned_cols=155 Identities=12% Similarity=-0.019 Sum_probs=79.5
Q ss_pred HHhCCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 006705 134 YSQKAHSFEALNLFI-RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
..-.++++++.++.+ .-.-..++ ..-.+.++.-+-+.|-.+.|.++- .|+. .-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHH
Confidence 344566666555554 11111111 233555666666666666665542 2222 23344567788888
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 006705 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292 (634)
Q Consensus 213 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 292 (634)
|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.......|
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 877776655 556788888888888888888777766543 3444445555666666556655555544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
-+|....++.-.|++++..+++.
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12333344444566655555543
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.02 E-value=10 Score=43.23 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHHH
Q 006705 406 VDMLGRAGRVGEALEFIKNMPFEPTAAIL--GSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~~ 452 (634)
+.+|-.+|+|.+|+.+-.++....|...- ..|.+-+...++.-+|-.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 34455566666666666655433333321 344455555554444433
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.99 E-value=0.65 Score=43.62 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=47.5
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC---CCchHHHHHHHHhhcCC
Q 006705 411 RAGRVGEALEFIKNM-------PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYASAGR 480 (634)
Q Consensus 411 ~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 480 (634)
+.|++.+|..-|... ...||...| |..++...|+++.|...|..+.+-.|+ -+..+.-|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 123344444 445555666666666666555554444 34556667777777778
Q ss_pred cHHHHHHHHHHhhC
Q 006705 481 WEDVTRVRELMKEK 494 (634)
Q Consensus 481 ~~~A~~~~~~m~~~ 494 (634)
.++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777654
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.88 E-value=9.8 Score=36.98 Aligned_cols=97 Identities=5% Similarity=-0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccchH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHH
Q 006705 263 YASVLTALSGLAALG---HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGY 336 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~ 336 (634)
+..+..++...+..+ +|..+++.+... .+..+.++-.-+..+.+.++.+.+.+++.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 334444454444333 334444444322 2223334434455555566666666666666532 223444444443
Q ss_pred ---HhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 337 ---SKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 337 ---~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
... ....|...+..+... .+.|..
T Consensus 166 ~~l~~~-~~~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEK-SPELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHhh-CcHHHHHHHHHHHHH-HhCCCh
Confidence 322 234555555555544 344444
No 247
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.77 E-value=6.9 Score=42.83 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCChh--
Q 006705 93 VYLRTRLIVFYNKCECLSDARKMFDEMR---ERNVVSWTAMISAYSQKAHS-------FEALNLFIRMLRSDTEPNEF-- 160 (634)
Q Consensus 93 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~-- 160 (634)
..+| ++|-.+.|||++++|.++..+.. ++....+-..+..|..+.+- +....-|++........|.+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3344 46777789999999999984333 24445677777777765322 24445566655443322443
Q ss_pred hHHHHHHHHhccC-Cc-------HHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhh
Q 006705 161 TFATVLTSCAGAF-GF-------ELGKQIHSLIIKSNFE-----SHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 227 (634)
Q Consensus 161 t~~~ll~~~~~~~-~~-------~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 227 (634)
..-.+|..|--.. .. +.-.-+.=.+++..-. .+..++..|-+...+-| .+.|.. ..+...
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~ 263 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH
Confidence 2222333232211 11 1111111111222111 11223332222222111 233333 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYS 306 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~ 306 (634)
| ...+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 3 2344568999999998877 3345667777777666554332222111 2221111 0111134556666666
Q ss_pred h---cCCHHHHHHHHhhcC
Q 006705 307 K---CGSLTYSRRVFDNMS 322 (634)
Q Consensus 307 ~---~g~~~~A~~~f~~m~ 322 (634)
+ ..+..+|.+.|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 345566666555443
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.54 E-value=4.5 Score=42.65 Aligned_cols=161 Identities=11% Similarity=0.006 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCccCCh
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-----VTYLAVLSGCSH----GGMEDRGLAVFHEIVDCKDGFEPEI 399 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~ 399 (634)
...+++...-.|+-+.+++++.+..+..++.-.. .+|..++..+.. ....+.+.++++.+.+.| |+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CCc
Confidence 3445555556677777777777665543333222 123333333332 456788999999998653 554
Q ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHH-HH
Q 006705 400 EHYGC-VVDMLGRAGRVGEALEFIKNMPF-E-----PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYV-IL 471 (634)
Q Consensus 400 ~~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l 471 (634)
..|.. -...+...|++++|++.|++.-. + -....+--+...+....++++|...+..+.+...-+...|. ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44433 34566678999999999986521 1 11223334556677888999999999998886655444554 44
Q ss_pred HHHHhhcCCc-------HHHHHHHHHHhh
Q 006705 472 SNLYASAGRW-------EDVTRVRELMKE 493 (634)
Q Consensus 472 ~~~~~~~g~~-------~~A~~~~~~m~~ 493 (634)
+-+|...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5556778888 888888888754
No 249
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.22 E-value=37 Score=42.08 Aligned_cols=310 Identities=12% Similarity=0.061 Sum_probs=166.9
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCHHHHHHHHc-cCCCCChhhHHHHHHHHHhcCChHH
Q 006705 167 TSCAGAFGFELGKQIHSLIIKSNF--ESHIYVGSSLLDMYAKAGRIHEARGVFE-CLPERDVVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~ 243 (634)
.+-.+.+.+..|...++.-..... ......+-.+...|+.-+++|...-+.. ....++. ..-|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHH
Confidence 344455666666666665210000 1122334445557888888777766665 2333322 234445667889999
Q ss_pred HHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhcC
Q 006705 244 AIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSL-IDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 244 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~ 322 (634)
|...|+++.+.+ ++...+++-++......+.+....-..+..... ..+...-++++ +.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 999999998764 333667777777766677766665543333322 23333333332 444466677766666555
Q ss_pred CCChhhHHHH-H-HHHHhcC--ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH----------HHh
Q 006705 323 ERTVISWNAM-L-VGYSKHG--MGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF----------HEI 388 (634)
Q Consensus 323 ~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~----------~~~ 388 (634)
..+..+|.+. + ..+.+.. +.-.-.+..+.+++. -+.| +.+|+..|.+..+.++. ...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~-~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSREL-VIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHH-hhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677665 2 2222222 222222344444443 1111 22333333222221111 111
Q ss_pred hhccCCccCCh------HHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCchHHHHH
Q 006705 389 VDCKDGFEPEI------EHYGCVVDMLGRAGRVGEALEFIKNM----PFEP-----TAAILGSLLGACRVHYNVDIGEFV 453 (634)
Q Consensus 389 ~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~ 453 (634)
.... ++.++. .-|..-+..=....+..+-+--+++. ...| -..+|-.....++..|.++.|..+
T Consensus 1614 ~~l~-~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EELK-KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHhh-ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111 233321 22222222111111222222112211 1122 245788899999999999999998
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
.-.+.+..+ +..+.-.+..+...|+-..|..++++..+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888888775 47899999999999999999999999876543
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=1.2 Score=44.21 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
..++..|.-.|.+.+++.+|+..-.+. .. ++|+...--=..++...++++.|+..++++++++|.|-.+-.-|+.+--
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667778888999999998887775 22 4566666566688899999999999999999999999877777877777
Q ss_pred hcCCcHHH-HHHHHHHhhC
Q 006705 477 SAGRWEDV-TRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A-~~~~~~m~~~ 494 (634)
+....++. .++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66665554 7888888543
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=92.08 E-value=6.6 Score=40.18 Aligned_cols=145 Identities=7% Similarity=0.068 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 342 GREVVELFNLMREENKVKPDSV-TYLAVLSGCS---------HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
.+.|+.+|.+........|+.. .|..+..++. ...+..+|.+.-+...+.. +-|......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld---~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT---TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHh
Confidence 4578888888873324566653 3333222211 1234556777777776531 3467777777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch--HHHHHHHHhhcCCcHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN--YVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 487 (634)
.|+++.|..+|++. ...|| ..+|......+.-.|+.++|....++.++++|..... ....+++|+.. .+++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 88899999999987 44555 4456666666778899999999999999999984332 33455566664 46777776
Q ss_pred HHH
Q 006705 488 REL 490 (634)
Q Consensus 488 ~~~ 490 (634)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.88 E-value=10 Score=34.79 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCC--CCCHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT-VISWNAMLV-GYSKHGMGREVVELFNLMREENKV--KPDSVTYLAV 368 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~g~--~pd~~t~~~l 368 (634)
...+..+...+...+....+.+.+..... ++ ...+..... .+...|++++|...|.+.... .. ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHh
Confidence 33344444444555555555555555443 11 122222223 567777788888877777442 11 1123334444
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHY 445 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~ 445 (634)
...+...++.+.+...+...... ... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44456677788888888877753 233 3566777777777888888888877765 32333 344444445555666
Q ss_pred CchHHHHHHHHHhccCCC
Q 006705 446 NVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~ 463 (634)
..+.+.....+..+..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 678888888888877775
No 253
>PRK09687 putative lyase; Provisional
Probab=91.83 E-value=13 Score=36.06 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ...++...+..+... +|...-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHH
Confidence 44444455555555555333333333333444443344444444432 133444444444432 3444455555555
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+.|+. .+...+-...+. + + .....+.+++..|.. +|...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~--~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKK--G---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HccCCh-hHHHHHHHHHcC--C---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 555553 333333333321 1 1 123445555555553 344444443
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=5.6 Score=43.36 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.+.|++++|...|-+-... +.|.. ++.-|.....+.+-..+++.+.+. |+. +..+-+.|+.+|.+.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~--gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFLDAQRIKNLTSYLEALHKK--GLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhcCHHHHHHHHHHHHHHHHc--ccc-cchhHHHHHHHHHHhcch
Confidence 34556666666666554432 33322 233444455555555566666554 433 445556666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 416 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
+.-.++++..+...-..-....+..|+..+-.++|..+..+
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 66666666553100011123445555555555555555444
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=11 Score=34.89 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.++--..+|..+|.++.|...+++.-+ ...+-++++|+++|++...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHH
Confidence 344555667777776666555544321 1234456666666655443
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.57 E-value=6.8 Score=33.90 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. ..|....-.+|+..|.....-
T Consensus 18 ~~al~~~~~~D~e~lL~ALr----vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR----VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33456778888888888887 345543 233334455678899999999999983 235555556777777666655
Q ss_pred hHHHHHHHHHhccCCC
Q 006705 448 DIGEFVGQRLMEIEPE 463 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~ 463 (634)
..-....+.+++..++
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 5556666666666654
No 257
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.27 E-value=9.9 Score=37.17 Aligned_cols=134 Identities=12% Similarity=0.171 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhc--c----cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSG--L----AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR 315 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 315 (634)
++.+.+++.|.+.|.+-+..+|.+....... . .....+..+|..|.+...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4556788888999888888877664433322 1 123445666666665432100
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 006705 316 RVFDNMSERTVISWNAMLVGYSKHGM----GREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGM--EDRGLAVFHE 387 (634)
Q Consensus 316 ~~f~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~--~~~a~~~~~~ 387 (634)
.++-.++.+|+.. ..++ .+.+..+|+.+.+. |+..+. .....+|..+..... ..++.++++.
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 0122233333222 1111 34567777888776 666543 334444444333222 3467788888
Q ss_pred hhhccCCccCChHHHHHHHHH
Q 006705 388 IVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 388 ~~~~~~~~~p~~~~~~~li~~ 408 (634)
+.+. ++++...+|..+.-+
T Consensus 208 l~~~--~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 208 LKKN--GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHc--CCccccccccHHHHH
Confidence 8876 888887777765443
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=15 Score=35.26 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=52.0
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCchHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGS---LLGACRVHYNVDIG 450 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~~a 450 (634)
..|+..++...|+..... .+-+...--.|+..|...|+.++|..++..+|..-...-|.. -|....+.....+.
T Consensus 146 ~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 146 EAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344444455544444432 111233344445555555555555555555543222222222 11222222222221
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.. ++.-...+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 223 ~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 22233445666666666666666666666666655555433
No 259
>PRK09687 putative lyase; Provisional
Probab=90.70 E-value=17 Score=35.28 Aligned_cols=74 Identities=5% Similarity=-0.022 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
+..+-..-+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 44444445555555555332222333333333 123456667777764 677777777653 346655555555553
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=90.57 E-value=3.5 Score=35.79 Aligned_cols=85 Identities=6% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.+.|++++|..+|+-+... + .-|..-+..|..+|...+.+++|...|...... . .-|+..+-.....|...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--L-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-cCCCCccchHHHHHHHhCCH
Confidence 33455555555555554443 1 112223344444445555555555555554432 1 11222233344555555666
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
+.|+..|...
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=90.45 E-value=4.7 Score=41.19 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHH---------cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGR---------AGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH 444 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 444 (634)
..+.|..+|.+..... .+.|+ ...|..+...+.. .....+|.++-++. .. +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~-~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKS-DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcc-cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 3567788888888433 45665 3344444333321 22344566666554 22 34667777777777788
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++.+.|...++++..++|+.+.+|...+..+.-+|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999986543
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.32 E-value=6.6 Score=33.29 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=23.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 337 SKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
.+.|++++|.+.|+.+.......| ....-..++.++.+.+++++|...++..++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555555555544311111 1133344444455555555555555554443
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.26 E-value=14 Score=33.60 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+=+...-... .-.|-...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHH
Confidence 346666666677777777777777777654 222 2222222223444567776665544443321 22232233322
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------CchHHHHHHHHhh
Q 006705 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYVILSNLYAS 477 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 477 (634)
++. +.-++.+|..-+.+--...|..-|...|-.+....-.++ .+++++.....++ .++|.-|+.-|..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 222 233455555433322113455566655544332221111 1222222221121 3678899999999
Q ss_pred cCCcHHHHHHHHHHhhCCC
Q 006705 478 AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ~g~~~~A~~~~~~m~~~~~ 496 (634)
.|..++|..+|+.....++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 9999999999998865443
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.26 E-value=0.41 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555566666666666666666666666664
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.25 E-value=2 Score=35.36 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
++..|+.+.|++.|.+.... .+-+...|+.-..++.-.|+.++|+.=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555543 233445555555555555555555555555544
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.22 E-value=6 Score=33.51 Aligned_cols=51 Identities=10% Similarity=-0.059 Sum_probs=22.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+.|++++|.+.|+.+...++.-+-....--.|+.+|.+.|++++|...+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345555555555555544321111233333444444444444444444433
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.21 E-value=5.4 Score=37.68 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
.|+.-+..| +.|++.+|...|..-.+. .+-+. ..+--|..++...|++++|..+|..+.+.++.-+--++.+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 366655543 456677888877777765 21111 234456677777778888877777777766333334567777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m 425 (634)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777777777777777777765
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.81 E-value=15 Score=36.90 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC----CCchH
Q 006705 394 GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE----NAGNY 468 (634)
Q Consensus 394 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~ 468 (634)
...++..++..++..-. .++..+. ......+|..+...+++.|+++.|...+.++....+. .+...
T Consensus 117 ~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~ 187 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF 187 (352)
T ss_pred HhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH
Confidence 45667777766654311 1111111 1335568899999999999999999999998886532 34566
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..-+..+...|+-.+|...++...+.
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788999999999999999888763
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=3.6 Score=39.75 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=92.7
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHH---HHH-HHHHHhcCCc
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAIL---GSL-LGACRVHYNV 447 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~---~~l-l~~~~~~~~~ 447 (634)
..|+..+|...++++.+ ..+.|...++-.=+++.-.|+.+.-...|+++ |. .||...| +.+ .-+....|-+
T Consensus 115 ~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45777888888899987 45778888888889999999999988888887 43 5565333 223 2445678999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
++|++..+++.+++|.|.-+...+..++--.|+..++.++..+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999998888888999999999999999887655
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.57 E-value=31 Score=36.50 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=122.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
++..+|+..++--.+.|+.+.+.-+|++...| =..-|--.+.-....|+.+-|-.++....+- -++-.+.+-..-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHH
Confidence 45678888888889999999999999988765 2344555555555558888888777666554 2322222222222
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCC-hHHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----H
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPE-IEHYGCVVDMLGRAGRVGEAL---EFIKNM-PFEPTAAILGSLL-----G 439 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll-----~ 439 (634)
.-+-..|+.+.|..+++.+.+. . |+ ...-..-+.+..+.|..+.+. .++... +.+-+......+. -
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 2255678999999999999975 3 43 333334456677888888887 555443 2222322333222 2
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
-+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 34556788999999999999999998899999888776653
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.51 E-value=6.6 Score=34.26 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=22.4
Q ss_pred cCCChHHHHHHHhhcCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHC
Q 006705 105 KCECLSDARKMFDEMRERNVVSWTAMI-----SAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
+.+..++|...|..+.+.+--+|-.|. ....+.|+...|+..|++.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344455555555555443333333322 2234445555555555555443
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.51 E-value=31 Score=36.43 Aligned_cols=155 Identities=17% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC-CCCCCh-----hhHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchHHH-
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRS-DTEPNE-----FTFATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVG- 197 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~- 197 (634)
.+++...=.|+-+.+++.+.+-.+. ++.-.. .+|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444556666666666554432 121110 122222222222 34555666666666654 2333222
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHH
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPER-------DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (634)
---...+...|++++|.+.|+..... ....+--+.-.+.-..++++|.+.|.++.+.. .....+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22334555667777777777654321 11122233444555667777777777776542 23333444333333
Q ss_pred -hcccch-------HHHHHHHHHH
Q 006705 271 -SGLAAL-------GHGKQVHSHV 286 (634)
Q Consensus 271 -~~~~~~-------~~a~~i~~~~ 286 (634)
...++. ++|.+++..+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 233444 5555555544
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.47 E-value=19 Score=33.87 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=42.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..-|.+.|.+..|..-++.+++--|+.. ..+..|..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3567788888888877888777655533 3456788889999999999988777654
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.34 E-value=0.74 Score=27.74 Aligned_cols=30 Identities=17% Similarity=-0.013 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
|..+...+...|++++|...++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444445555555555555555555555554
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.08 E-value=12 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 395 (634)
.+.-+..+...|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+.-+. |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek--G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEK--GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh--ch
Confidence 344566677788888777787777653 3567777777888888888888888888877765 54
No 276
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.46 E-value=34 Score=35.50 Aligned_cols=159 Identities=11% Similarity=0.112 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
...-+++..+.++-.+.-...+..+|..-| .+...|..++..|... ..+.-..+++++++..+. |++...-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 345567778888888888888888888754 4667788888888777 556677788888877643 455556677777
Q ss_pred HhcCCHHHHHHHHhhcCCCCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 306 SKCGSLTYSRRVFDNMSERTV---------ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
-+ ++.+.+...|.++..+-+ ..|.-++..- ..+.+..+.+...++...|..--.+.+--+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 76 888888888887653211 2566665422 34567777777777776566666677777778889999
Q ss_pred cHHHHHHHHHHhhhc
Q 006705 377 MEDRGLAVFHEIVDC 391 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~ 391 (634)
++++|.+++..+.+.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999877764
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.43 E-value=1.2 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
++..+...|.+.|++++|++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666665
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.41 E-value=0.78 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.34 E-value=3.1 Score=39.82 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMRE-----ENKVKPDSVTYL 366 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~g~~pd~~t~~ 366 (634)
..++..++..+..+|+.+.+...+++.... |...|..++.+|.+.|+...|+..|+++.+ . |+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl-gi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL-GIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc-CCCccHHHHH
Confidence 345677888888899999988888887643 667899999999999999999998887765 3 6777766655
Q ss_pred HHHHH
Q 006705 367 AVLSG 371 (634)
Q Consensus 367 ~ll~a 371 (634)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.33 E-value=17 Score=31.93 Aligned_cols=133 Identities=12% Similarity=0.034 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHhc-CCHHHHHHHHccCC
Q 006705 144 LNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY-VGSSLLDMYAKA-GRIHEARGVFECLP 221 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~~~~m~ 221 (634)
++.++.+...+++|+...+..++..+.+.|.+..-.+ ++..++-+|.. +...|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3555666667777777778888888877777554333 33444444433 333333221111 01223344444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 222 ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556667778888888888877665321 222334556666666665555555554444
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.81 E-value=40 Score=35.67 Aligned_cols=119 Identities=16% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-----PFEPTAAILGS 436 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 436 (634)
..+|...+.--...|+.+...-+|+...- ....-.+.|-..+.-....|+.+-|..++... +..|......+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli---~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI---PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh---HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 35666666666677777777777766653 22333455555666666667777777666554 11233222222
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHH
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 485 (634)
..+-..|+...|..+++.+.+--|.....-..-+++..+.|+.+.+.
T Consensus 374 --~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 --RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 22345567888888877777655665555555666667777777776
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.78 E-value=30 Score=35.79 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=67.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHH
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPF--EPT--AAILGSLLGAC 441 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~ll~~~ 441 (634)
..+..++-+.|+.++|.+.+++|.+.+ .......+...|+..|...+++.++..++.+-.. -|. ...|++.+--.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 445666778899999999999998753 2222455677899999999999999999988731 233 34566555444
Q ss_pred HhcCCc---------------hHHHHHHHHHhccCCCCC
Q 006705 442 RVHYNV---------------DIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 442 ~~~~~~---------------~~a~~~~~~~~~~~p~~~ 465 (634)
+.-++. ..|.++..++.+.+|..+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 433331 124566778888888744
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=24 Score=32.84 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=106.0
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hhhHHHHHHHHHhcCChH
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT--VISWNAMLVGYSKHGMGR 343 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g~~~ 343 (634)
.-.+|-...+++++...+....+. .+.+...|.+ ...++.|.-+.++|.+-+ +..|+--...|.++|.++
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 344555566666666655544421 1112211111 122344444455554322 234566677899999888
Q ss_pred HHHHHHHHHHHc-CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHH
Q 006705 344 EVVELFNLMREE-NKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE 420 (634)
Q Consensus 344 ~A~~~~~~m~~~-~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 420 (634)
-|-..+++.-+. ..+.||.. .|.--+......++...| .+.|......|.+..+++||-.
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma-----------------~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA-----------------FELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH-----------------HHHHHHhhhHhhhhHHhhHHHH
Confidence 777666554321 03566542 222222222222222222 3445556667778888888776
Q ss_pred HHHhCC-------CCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHhcc----CCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 421 FIKNMP-------FEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEI----EPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 421 ~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
.|.+-. .-|+. ..+.+.|-.+....++..|+..++.-.++ .|++..+...|+.+|- .|+.+++.++.
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 665531 11222 23444455555666888888888775543 4556667777877774 57888777765
Q ss_pred H
Q 006705 489 E 489 (634)
Q Consensus 489 ~ 489 (634)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.50 E-value=2.3 Score=40.66 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+...++.++...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455667777778888888888888889998888999999999999999999999988865
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.42 E-value=10 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.5
Q ss_pred HhcCChHHHHHHHHHHH
Q 006705 337 SKHGMGREVVELFNLMR 353 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~ 353 (634)
.+.|+...|...|.++-
T Consensus 105 a~kgdta~AV~aFdeia 121 (221)
T COG4649 105 AQKGDTAAAVAAFDEIA 121 (221)
T ss_pred hhcccHHHHHHHHHHHh
Confidence 33444444444444443
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.41 E-value=1.3 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777776643
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=52 Score=36.35 Aligned_cols=75 Identities=8% Similarity=0.032 Sum_probs=39.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc-cCCCCCchHHHHHHHHhhcCC
Q 006705 405 VVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME-IEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 480 (634)
++..+....+.+.+..+.+..+. -++..|..++..+.+.+..+.-.+...++++ +...+.-+-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445556666667666666642 2666777777777777765544433333322 111122222345555555553
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.18 E-value=35 Score=34.28 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP---DSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
....+|..++..+.+.|+++.|...+.++... +..+ +......-....-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567888888888888888888888888764 2111 223333334445566777888887777776
No 289
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.11 E-value=11 Score=29.47 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 175 FELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 33333334456677899999999999999999999988776 4677778788888888877
Q ss_pred CCccChhhHHH
Q 006705 255 GMISNYVTYAS 265 (634)
Q Consensus 255 g~~p~~~t~~~ 265 (634)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=32 Score=33.11 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHH---HHHHHHHhcCChHH
Q 006705 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-VISWN---AMLVGYSKHGMGRE 344 (634)
Q Consensus 269 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~---~li~~~~~~g~~~~ 344 (634)
.....++..++..++....... +-+....-.|..+|...|+.+.|..++..++... ...|- +-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777777777766654 2234555667888888899999988888887431 11121 22333333333333
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 345 VVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 345 A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+=.+.++
T Consensus 222 ~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333322 24 3344444555566667777666655555544
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.05 E-value=12 Score=36.68 Aligned_cols=123 Identities=8% Similarity=0.152 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHc--C----CChHHHHHHHhhcCC-------CCcchHHHHHHHHHhCCCh
Q 006705 74 LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNK--C----ECLSDARKMFDEMRE-------RNVVSWTAMISAYSQKAHS 140 (634)
Q Consensus 74 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~ 140 (634)
++....+++.+.+.|+..+.+++-+-.-.... . -....|..+++.|.+ ++-.++.+|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678889999999998888777653333322 1 234567777887765 344456666544 33333
Q ss_pred ----hHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCC--cHHHHHHHHHHHHhCCCCchHHHH
Q 006705 141 ----FEALNLFIRMLRSDTEPNEF--TFATVLTSCAGAFG--FELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 141 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
+.+..+|+.+...|+..+.. ..+.+|..+....+ ...+..+++.+.+.|++.....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 34556677777766655322 33333333322222 235566666777777666555554
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.00 E-value=31 Score=32.47 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=24.1
Q ss_pred HHhcCChHHHHHHHHHHhhcCC--ccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 235 YAQLGLDEEAIELFRKLQVEGM--ISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 235 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
-.+.|++++|.+.|+.+..... +-...+...++-++-+.++++.|....++.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3455666666666666554321 11122333333344444444444444444443
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.84 E-value=10 Score=33.95 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERT------VISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44566677777777777777777766532 23455566666666677666666655544
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.44 E-value=13 Score=38.99 Aligned_cols=150 Identities=17% Similarity=0.096 Sum_probs=103.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
-.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ ...||.. |- ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------s~D~d~r-Fe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------STDPDQR-FE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------CCChhhh-hh----hhhhcCcHHHHHHHHH
Confidence 457788888877777632 344566667777877777764 2333332 22 2346788998888765
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
+.. +..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+.+..|
T Consensus 662 e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 662 EAN--------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred hhc--------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 543 45679999999999999999999998763 36677777778888775555555555544443
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
.--.+|...|+++++.+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3345677889999998887654
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.04 E-value=26 Score=30.79 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY-LRTRLIVFYNKCECLSDARKMFDEMRER 122 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~ 122 (634)
+.++.+.+.++.|+...|..++..+.+.|.+..-. ++++.++-+|.. +.-.|+..-. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHH
Confidence 44556667889999999999999999988765443 344555444443 4333433222 233344443344443
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 188 (634)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3335778888999999999999998775322 2233455677777777766666666666553
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.33 E-value=5 Score=35.87 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHcCCHHHHHHHHHhC-C-CCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 407 DMLGRAGRVGEALEFIKNM-P-FEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
+-+.+.|++++|..-|... . .++. .+.|..-..+..+.+.++.|..-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455667777777666554 1 1111 2233333356677788888888889999999987777777788999999
Q ss_pred CcHHHHHHHHHHhhC
Q 006705 480 RWEDVTRVRELMKEK 494 (634)
Q Consensus 480 ~~~~A~~~~~~m~~~ 494 (634)
++++|++=++.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998765
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.89 E-value=2.1 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 006705 184 LIIKSNFESHIYVGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 184 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 214 (634)
++++.. |.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 456667777777777777777664
No 298
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.87 E-value=54 Score=33.49 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH-HHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT-YLAV 368 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t-~~~l 368 (634)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||... ..-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 45677788888888889999999998874 57889999999776 56778899999876654 355533 3445
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRV 443 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 443 (634)
+.-+...++-+.|..+|+..++ .+..+ ...|..+|+-=..-|++..+..+-++| ..-|...+-..+.+-|..
T Consensus 473 l~fLi~inde~naraLFetsv~---r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVE---RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHH---HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 6666778999999999997775 34444 678999999888999998888776666 223444344444444443
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.41 E-value=61 Score=33.73 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=73.8
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
+..+++.-+++-++..+ +.||..+.-.++ +--......++++++++.++.|-. . |.+....+..-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------S----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------h----hchhhhhhcccc
Confidence 44445555555555544 345554433322 222344567788888877765410 0 001000011011
Q ss_pred HHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 317 VFDNMSERT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 317 ~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
..+....++ +..-..+..+.-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++..++.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111122222 2222335555667888889999998888751111123466678888888888888888887754
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=9.6 Score=36.64 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=70.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-R--------TVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 359 (634)
.|.+....+...++..-....+++++...+-++.. | ..++|-.++. .-++++++.++..=... |+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqY-GiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQY-GIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchh-ccc
Confidence 35555666666777777767788888888777663 2 2233333322 33577888888887787 899
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 006705 360 PDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 360 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
||..|++.+++.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999888877776653
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.49 E-value=6.8 Score=33.92 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
-...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3455666777777777777777777766677777777777777777777775543
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.97 E-value=15 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.001 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPN--EFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
.+..+..-|.+.|+.++|++.|.+++.....|. ...+..++..+...+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666655433332 2234455555555566665555554443
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.91 E-value=13 Score=33.66 Aligned_cols=75 Identities=7% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCChHHHHHHHHHHHHcCCHHHHH
Q 006705 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 343 ~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
++|.+.|-++... +.--+......| ..|....+.+++..++....+.+..- .+|++.+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4677777777766 443333333333 34444567778887777777654333 567778888888888888777764
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.49 E-value=7.5 Score=33.10 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=43.1
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
..++.+.++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777778888888888888877777888888888899999998888876653
No 305
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.91 E-value=42 Score=33.17 Aligned_cols=194 Identities=13% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------ccCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHhh-cCCccC---hhh
Q 006705 196 VGSSLLDMYAKAGRIHEARGVF-------ECLPER--DVVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISN---YVT 262 (634)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~~-------~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t 262 (634)
++..+..+.++.|.++++...- .+..+. -..+|-.+..++-+.-++.+++.+-+.-.. .|..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555556666655554321 111111 112444455555554555555554333221 122221 123
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChh---
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFE-----IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-------ERTVI--- 327 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~--- 327 (634)
..++-.++...+.++++.+.|+...+.. ......++-+|...|.+..++++|.-+..+.- -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566677777888887777666532 22345677888888888888887765544332 12322
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 328 ---SWNAMLVGYSKHGMGREVVELFNLMREE---NKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 328 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+.-.|.-++-..|....|.+.-++..+. .|-+|-. .....+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1223455677778777777777665442 0322221 334455566778888888877666654
No 306
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.89 E-value=70 Score=33.08 Aligned_cols=205 Identities=13% Similarity=0.054 Sum_probs=101.3
Q ss_pred hcCcHHHHHHHHHHcCCCCCHhh--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHH
Q 006705 38 SNGQLTKALIEMATLGLEMRFEE--YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCECLSDAR 113 (634)
Q Consensus 38 ~~~~~~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 113 (634)
+.|+. ++++.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.+.
T Consensus 11 ~~g~~-~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 11 LFGEL-DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HhCCH-HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 44433 55677777887776543 234455555666654 445556666554432 1223455566778888887
Q ss_pred HHHhhcCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 114 KMFDEMRER----NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFT--FATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 114 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.+++.-... +..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+... .+++
T Consensus 86 ~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~ 156 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLID 156 (413)
T ss_pred HHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHh
Confidence 777654321 1112233 3334455554 44555556666654322 123344445566655433 3344
Q ss_pred hCCCCchH--HHHHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh
Q 006705 188 SNFESHIY--VGSSLLDMYAKAGRIHEARGVFECLPERDVV---SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 188 ~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (634)
.|..++.. ...+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 45433221 1122333445567777666666654443322 1123333334455543 34444556665553
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.49 E-value=2.2 Score=25.65 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
..+...+...|+++.|...+++..+++|
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3334444444444444444444444444
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.34 E-value=11 Score=29.36 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
++.+-++.+... ...|++....+.|.||.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K---~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK---CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---ccCchhhHHHHHH
Confidence 455555555555 78899999999999999999999999999988753 2334556776654
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=16 Score=35.24 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=63.9
Q ss_pred CCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 006705 88 CYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF 160 (634)
Q Consensus 88 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 160 (634)
|......+...++..-....+++++...+-+... |+... .+.++.+. .-++++++.++..=.+-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444555566555556677777776655543 22211 12222222 235678888877777788888888
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSN 189 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 189 (634)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888777766554
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.14 E-value=1.1 Score=38.40 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 345 (634)
++..+.+.+......++++.+.+.+...+..+.+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666666677777777777666566677778888888887776777776663322 3333455555556666666
Q ss_pred HHHHHHH
Q 006705 346 VELFNLM 352 (634)
Q Consensus 346 ~~~~~~m 352 (634)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.04 E-value=55 Score=30.95 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=130.5
Q ss_pred CCHHHHHHHHccCCC----C---ChhhHHHHHHHHHhcCChHHHHHHHHHHhhc---CC--ccChhhHHHHHHHHhcccc
Q 006705 208 GRIHEARGVFECLPE----R---DVVSCTAIISGYAQLGLDEEAIELFRKLQVE---GM--ISNYVTYASVLTALSGLAA 275 (634)
Q Consensus 208 g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~ 275 (634)
.++++|..-|+++.+ + .--+.-.||..+.+.+++++.++.|.+|..- .+ .-...+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665432 1 1223445777788888888888888777531 11 2234566777776666666
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C-------ChhhHHHHHHH
Q 006705 276 LGHGKQVHSHVLRF-----EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--------R-------TVISWNAMLVG 335 (634)
Q Consensus 276 ~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~-------~~~~~~~li~~ 335 (634)
.+.-..+++.-++. +-..=..+-+-|...|...|.+..-.+++.++.. . -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66555555533321 0011112234566667777777777777766542 0 13467777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHhhhccC--CccC--ChHHHHHHH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS-----HGGMEDRGLAVFHEIVDCKD--GFEP--EIEHYGCVV 406 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~--~~~p--~~~~~~~li 406 (634)
|....+-.+-..+|++...-...-|.+.. ..+++-|. +.|.+++|-.=|=+..+.|. |-+. +.--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888877777788776554233455543 34556554 45777776543333333331 2111 233466677
Q ss_pred HHHHHcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006705 407 DMLGRAGR----VGEALEFIKNMPFEPTAAILGSLLGACRVH 444 (634)
Q Consensus 407 ~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 444 (634)
+++.++|- -.+|. -....|.....+.|+.+|..+
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 78877762 12221 012246667778888888654
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.96 E-value=1.4 Score=37.88 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=52.9
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666677777777777777666556677778888888887777777777663322 3334455556666666666
Q ss_pred HHHHHHH
Q 006705 144 LNLFIRM 150 (634)
Q Consensus 144 ~~~~~~m 150 (634)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6655544
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.53 E-value=5 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666777777777777777777777653
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.45 E-value=2.3 Score=23.98 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=19.4
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHH
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
.....+..+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888999999999988775
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.94 E-value=40 Score=28.82 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHccCCC
Q 006705 204 YAKAGRIHEARGVFECLPE 222 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~ 222 (634)
+...|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3445555555555555544
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.55 E-value=3.2 Score=40.14 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=78.5
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHY 445 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~ 445 (634)
.+-|.+.|.+++|+..|.... .+.| ++..+..-..+|.+..++..|..-.... .. ..-...|.--..+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i----a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI----AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh----ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 445888999999999998877 4456 8888888888999999888777655443 11 111223444444555567
Q ss_pred CchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 446 NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+.++|..-++.+++++|++. -|-..|++.....++.-+.+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATKS 220 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhhc
Confidence 88889999999999999853 355556666666665555443
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.95 E-value=9.4 Score=30.03 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+-++.+... .+.|++....+.|.||.+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K---~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK---CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---ccChHHHHHHHHHH
Confidence 444455555555 68899999999999999999999999999998864 33334477777653
No 318
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.95 E-value=33 Score=27.33 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=58.4
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 172 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 251 (634)
.-..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888888777663 344444455567788999999966666667789999977765 5788888888888888
Q ss_pred hhcCCccChhhH
Q 006705 252 QVEGMISNYVTY 263 (634)
Q Consensus 252 ~~~g~~p~~~t~ 263 (634)
...| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 8776 4444444
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.61 E-value=13 Score=28.98 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
+.+..+....+.|++....+.|+||.+.+|+..|.++++-+.... ..+...|..+++
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 345555566788888888888888888888888888888776332 123345555543
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.48 E-value=3.2 Score=24.79 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.4
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999998653
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.32 E-value=12 Score=29.41 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 45 ALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 45 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
.+..+....+.|++....+.|+||.+.+++..|.++++-+...- .+....|..+++
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 34455556788888888888888888888888888888877553 222336666554
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.30 E-value=5.7 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.10 E-value=60 Score=29.26 Aligned_cols=110 Identities=7% Similarity=0.039 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH-----HHHHHHHcCCHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLA--VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC-----VVDMLGRAGRVG 416 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~ 416 (634)
+.....+++... .-+....++.+ +...+...+++++|...++..... |.-+.+.. |.......|.+|
T Consensus 70 ~~~~~~ekf~~~-n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQA-NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHH
Confidence 455555566554 11112222222 334577888889888888876632 22233333 445667789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCchHHHHHHHHHhccCCC
Q 006705 417 EALEFIKNMPFEPTAAILGSLL-----GACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
+|+..++... ...|.+++ ..+...|+.++|...+++.++.+++
T Consensus 144 ~AL~~L~t~~----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 144 AALKTLDTIK----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHhccc----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999888763 22344433 5677788888888888888877644
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.68 E-value=81 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.0
Q ss_pred HHHHhhcCCcHHHHHHHHHH
Q 006705 472 SNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m 491 (634)
+..+.+.++|++|.+.++..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 33456778888888887754
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.63 E-value=5.8 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 006705 402 YGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~ 423 (634)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456677777788888777765
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.32 E-value=98 Score=31.36 Aligned_cols=122 Identities=10% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYS---KHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
|-.+.+.-.+-..+...|+.+.|.+++++..---..+|......+. ..|.. ++ .- ...-|..-|.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--------rL-~~-~~~eNR~fflal 106 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--------RL-DY-RRPENRQFFLAL 106 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--------cc-CC-ccccchHHHHHH
Confidence 4556666666777778888888777765432100000000000000 00000 00 00 111234444444
Q ss_pred ---HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH-HcCCHHHHHHHHHhC
Q 006705 369 ---LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG-RAGRVGEALEFIKNM 425 (634)
Q Consensus 369 ---l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 425 (634)
+..+.+.|-+..|.++-+-+... ...-|+...-.+|+.|+ ++++++--+++++..
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsL--dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSL--DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44577888888998888888743 22224555666778776 788888777777764
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.39 E-value=6.7 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777766543
No 328
>PF13934 ELYS: Nuclear pore complex assembly
Probab=74.17 E-value=52 Score=30.76 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 329 WNAMLVGY--SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 329 ~~~li~~~--~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
|...+.|| ..++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+.. .-.+......++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p----~l~s~~~~~~~~ 148 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP----PLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC----CCCCHHHHHHHH
Confidence 33444443 3355566666655222 22222211 245555556666677666665431 112223333333
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006705 407 DMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACR 442 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 442 (634)
.. ..++.+.||..+.+..+.+-....|..++..|.
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 33 455677777776666542212335555555554
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.05 E-value=41 Score=26.47 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||++.|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444433311 22222233445677899999999999999999999987755 4667777777778788776
Q ss_pred CCCCCCHHHHHH
Q 006705 356 NKVKPDSVTYLA 367 (634)
Q Consensus 356 ~g~~pd~~t~~~ 367 (634)
| .|...+|..
T Consensus 98 -g-~p~lq~Faa 107 (115)
T TIGR02508 98 -G-DPRLQTFVA 107 (115)
T ss_pred -C-CHHHHHHHH
Confidence 3 455555543
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.48 E-value=6.5 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.9
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998764
No 331
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.94 E-value=1.2e+02 Score=31.46 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHC---CC-CCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 141 FEALNLFIRMLRS---DT-EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 141 ~~A~~~~~~m~~~---g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
++...++...... |+ ..+......++..+ .|+...+..+++.+...+-..+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 4555555554322 33 44444444444433 5777777777766654311111 1222222
Q ss_pred HccC---CCCChhhHHHHHHHHHh---cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc
Q 006705 217 FECL---PERDVVSCTAIISGYAQ---LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273 (634)
Q Consensus 217 ~~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (634)
+... ..++......+++++.+ .++++.|+.++.+|.+.|..|....-..++.++-..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 2211 12222334455666555 478999999999999999888766555555554333
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.58 E-value=33 Score=31.03 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=52.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCH
Q 006705 134 YSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS---NFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~ 210 (634)
+.+.|+ ++|++.|-.+...+.--+......+. .+-...|.+++.+++-.+++. +-.+|+.++.+|++.|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 57888888887765443444344444 344467788888888777664 2356778888888888888888
Q ss_pred HHHH
Q 006705 211 HEAR 214 (634)
Q Consensus 211 ~~A~ 214 (634)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.53 E-value=23 Score=36.20 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=42.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+...|+++.+++.+...... +.....+...++....+.|++++|...-..|... .++ ++++...-...--..|-+
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~--eie-~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN--EIE-DEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc--ccC-ChhheeeecccHHHHhHH
Confidence 34456666666665554432 3444555666666666666666666666655543 222 222222222222234555
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
+++.-.+++.
T Consensus 408 d~~~~~wk~~ 417 (831)
T PRK15180 408 DKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.22 E-value=17 Score=35.37 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=59.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 333 LVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
..-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..=-...+.. -...+.+|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----------d~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----------DKLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----------hHHHHHHHHH
Confidence 3459999999999999988775 467 8899999999999998888777655555432 1234555655
Q ss_pred c-------CCHHHHHHHHHhC-CCCCCH
Q 006705 412 A-------GRVGEALEFIKNM-PFEPTA 431 (634)
Q Consensus 412 ~-------g~~~~A~~~~~~m-~~~p~~ 431 (634)
. |.+.||.+-.+.. ..+|+.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5 4555555544443 445663
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.83 E-value=97 Score=29.36 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCChhHHHHHHHHHH-cCCChHHHHHHHhhcCC--CCc-----chHHHHHHHHHhCCChhHHHHHHHHHHHC---CC--
Q 006705 89 YRPPVYLRTRLIVFYN-KCECLSDARKMFDEMRE--RNV-----VSWTAMISAYSQKAHSFEALNLFIRMLRS---DT-- 155 (634)
Q Consensus 89 ~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~-- 155 (634)
-.||+..-|..-+.-+ +..+.++|..-|+++.+ +.- .+..-+|..+.+.|++++.++.|.+|+.- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555443222111 23456667666666543 111 12345677777778888777777777531 11
Q ss_pred CCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCC-------
Q 006705 156 EPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS-----NFESHIYVGSSLLDMYAKAGRIHEARGVFECLPER------- 223 (634)
Q Consensus 156 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------- 223 (634)
.-+..+.++++...+.+.+.+.-..+++.-++. +-..--.+-+.|...|...|++....+++.++...
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 123445666666666666655555554433221 00111122344666666677777766666655320
Q ss_pred -C-------hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 224 -D-------VVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 224 -~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
| ...|..=|..|....+-..-..+|++...
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 1 23455556666666666666666665543
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.20 E-value=95 Score=28.59 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
|.+..|+.+.+.+...+|+...++-.+. -+.|..+-..++.-++-.|++++|..-++-.-+..+...+....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455677888889999999988877765 23455566677888899999999987777665432234455667777766
Q ss_pred HHHHcCCHHHHH-HHHHhC--C-C-CCCHHHHHHH-HHHHHhc--CCchHHHHHHHHHhccCCCCC
Q 006705 408 MLGRAGRVGEAL-EFIKNM--P-F-EPTAAILGSL-LGACRVH--YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 408 ~~~~~g~~~~A~-~~~~~m--~-~-~p~~~~~~~l-l~~~~~~--~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+-. +. ++|..- | + -.....|... +.+..-+ |.-+....+.+..++..|..+
T Consensus 81 ~ea-------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 81 CEA-------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 432 22 233321 1 1 1123445444 4444333 344556667777777776643
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.66 E-value=1.1e+02 Score=29.25 Aligned_cols=95 Identities=15% Similarity=-0.019 Sum_probs=44.3
Q ss_pred HHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHhccCCcH-HHHHHHHHHHHh---CC--CCchHHHHHHHHH
Q 006705 134 YSQKAHSFEALNLF----IRMLRSDTEPNEFTFATVLTSCAGAFGFE-LGKQIHSLIIKS---NF--ESHIYVGSSLLDM 203 (634)
Q Consensus 134 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~---g~--~~~~~~~~~li~~ 203 (634)
+.++|+...|-++- +-..+.+.++|......++..+...+.-+ .-..+...+++. |- .-|+.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44455544443332 22233455555555445544444332211 223333333332 21 2356777888889
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhH
Q 006705 204 YAKAGRIHEARGVFECLPERDVVSC 228 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~~~~ 228 (634)
|.+.|++.+|+..|-.-.+++...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHH
Confidence 9999999999988755443333333
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.48 E-value=1.6e+02 Score=30.89 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYA 205 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 205 (634)
..-+++..+.++-...-...+-.+|+.-| -+...|..++..|... .-+.-..+++++++..+. |+....-|+.-|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34456666666666666666666666533 3555666666666665 445555666666665432 3333344555554
Q ss_pred hcCCHHHHHHHHccCCCC------C---hhhHHHHHHHHHhcCChHHHHHHHHHHhh-cCCccChhhHHHHHHHHhcccc
Q 006705 206 KAGRIHEARGVFECLPER------D---VVSCTAIISGYAQLGLDEEAIELFRKLQV-EGMISNYVTYASVLTALSGLAA 275 (634)
Q Consensus 206 ~~g~~~~A~~~~~~m~~~------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~ 275 (634)
+ ++.+.+...|.+...+ + -..|..++..- ..+.+..+.+....+. .|..--.+.+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4 6666666666544321 1 11455544311 2344555555554442 2333333444444555666667
Q ss_pred hHHHHHHHHHHHHcC
Q 006705 276 LGHGKQVHSHVLRFE 290 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~ 290 (634)
+.++.+++..+.+.+
T Consensus 221 ~~eai~Ilk~il~~d 235 (711)
T COG1747 221 WTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHHHHHHHhhhc
Confidence 777777777666554
No 339
>PRK10941 hypothetical protein; Provisional
Probab=68.17 E-value=33 Score=33.00 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.|-.++.+.++++.|..+.+.++.+.|+++.-+---+-+|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 456688899999999999999999999998877777888899999999999988877654
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.13 E-value=2e+02 Score=31.88 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 195 YVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
.++...|+-+.-.|++++|-...-.|...+..-|---+.-+...++......+ +.....+.+...|-.+|..|.. .
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~ 468 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S 468 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H
Confidence 34455556666666666666666666555555565555555555544332221 1111111233334444444433 1
Q ss_pred chHHHHHHHHHHHHc-------------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 006705 275 ALGHGKQVHSHVLRF-------------------EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV 326 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~-------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 326 (634)
....+++.+.+. ...-+..+...|+..|...+++++|..++-...++++
T Consensus 469 ---~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 469 ---DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred ---HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111111111100 0011223344588888888888888888887776644
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.68 E-value=1.1e+02 Score=28.60 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHhc-CCchHHHHHHHHHhccCCCCC
Q 006705 408 MLGRAGRVGEALEFIKNM---PFEPTAAILGS---LL--GACRVH-YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll--~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.-+..+++.+|+++|++. ....+..-|.. ++ ..|... .+.-.+...+++..+++|.-.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 334678899999998886 22333333432 22 223222 566667888899999999733
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.73 E-value=1.1e+02 Score=28.48 Aligned_cols=24 Identities=4% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhc
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
+..--+..+.+.+|..+|+++...
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345667778888888887764
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.71 E-value=43 Score=34.33 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=76.5
Q ss_pred HHhcCChHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 336 YSKHGMGREVVE-LFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 336 ~~~~g~~~~A~~-~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
-...|+...|-+ ++..++.. .-.|+.+-..+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|+
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~---~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK---IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh---hhcCCchHHHHHHHhhhchhh
Confidence 344677666654 44555554 4556665555544 5677888888887776654 345566777788888888888
Q ss_pred HHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 415 VGEALEFIKNM---PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 415 ~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
+++|..+-..| .++ +......-.......|-++++...+++++.+.|+.
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88888877766 221 22233333334455566777777777777777663
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.45 E-value=6.3 Score=23.21 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556888899999999999999998764
No 345
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.39 E-value=2.1e+02 Score=31.62 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
..+.+.|..++.......+..++.. ....+.......+..+++...++..... ..+.....--+..-.+.++++
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCCcHHHHHHHHHHHHccCHH
Confidence 3456888888888755524444432 2233322233332255666666665432 224444455555555888999
Q ss_pred HHHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCchHHHHHHHHHhc
Q 006705 417 EALEFIKNMPFE-PTAAILGS-LLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 417 ~A~~~~~~m~~~-p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
.+...|..|+.. .+..-|.- +..+....|+.++|...++++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 988888888421 12222222 33454557888889888888744
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.32 E-value=82 Score=31.91 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=51.0
Q ss_pred CHHHHHHHH---HHHHhcCCchHHHHHHHHHhccCCC-CCchHHHHHHHHh-hcCCcHHHHHHHHHHhh
Q 006705 430 TAAILGSLL---GACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYA-SAGRWEDVTRVRELMKE 493 (634)
Q Consensus 430 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 493 (634)
|...|.++. ....+.|-+..|.+..+-++.++|. |+-.-..+|+.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444454443 6778899999999999999999999 8888888888885 67888888888887654
No 347
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.18 E-value=84 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCcchHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 006705 122 RNVVSWTAMISAYSQKAH-SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGA 172 (634)
Q Consensus 122 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (634)
.+-.+|++++.+.++... ---+..+|.-|++.+.+++..-|..++.+|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 466789999998876665 345678888898888888999999999988765
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.30 E-value=20 Score=34.21 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 436 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.....|...|.+.+|..+.++++.++|-+...+-.|+..|+..|+--+|.+-++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344788999999999999999999999999999999999999999888888888774
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.44 E-value=64 Score=34.29 Aligned_cols=100 Identities=15% Similarity=0.003 Sum_probs=61.2
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHH
Q 006705 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVH 283 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 283 (634)
..+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..++-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34567777777765443 3566788888888888888888887776654 445555666666655544444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 284 SHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 284 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
....+.|. . |.-.-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 44444442 1 2223345556666666666543
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.21 E-value=13 Score=20.88 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=9.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhccC
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
...+...++++.|...++..++..
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHccC
Confidence 333334444444444444444333
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.29 E-value=7 Score=26.74 Aligned_cols=30 Identities=23% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
+.-++.+.|+++.|....+.+++++|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 456778899999999999999999998743
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.80 E-value=2.4e+02 Score=31.03 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCC-------hHHHHHHHHHHhhcCCccChhh-
Q 006705 194 IYVGSSLLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGYAQLGL-------DEEAIELFRKLQVEGMISNYVT- 262 (634)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t- 262 (634)
..+| ++|--+.|||++++|.++..+.. .+....+-..+..|+.+.+ -++...-|++........|++-
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3445 36777788899988888883322 2233455566666666432 2355555666655433224432
Q ss_pred -HHHHHHHHhccc--------chHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 006705 263 -YASVLTALSGLA--------ALGHGKQVHSHVLRFEIPSY-----VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328 (634)
Q Consensus 263 -~~~ll~~~~~~~--------~~~~a~~i~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 328 (634)
.-.+|..|--.. ..+.-.++.-.+++.....+ ..++.-|=+...+-| .+.|.. ..+...
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~ 263 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH
Confidence 222232222111 12222233333333322111 122222211111111 122222 112222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
....+.-.|+++.|++.+-+ .. +...|.+.+...+.-|.-..-.+... ..+.... .-.|..-.+..||..
T Consensus 264 ---Yf~~LlLtgqFE~AI~~L~~--~~-~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~-~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 264 ---YFQVLLLTGQFEAAIEFLYR--NE-FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVD-PGDPPPLNFARLIGQ 333 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT----------------------------HHHHHHH
T ss_pred ---HHHHHHHHhhHHHHHHHHHh--hc-cCcccHHHHHHHHHHcCCCCCCCccc---cceeeec-CCCCCCcCHHHHHHH
Confidence 23445667888888887766 12 34455666655554443222221111 2222111 111222556777777
Q ss_pred HHH---cCCHHHHHHHHHhC
Q 006705 409 LGR---AGRVGEALEFIKNM 425 (634)
Q Consensus 409 ~~~---~g~~~~A~~~~~~m 425 (634)
|.+ ..+..+|.+.+--+
T Consensus 334 Y~~~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLI 353 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGG
T ss_pred HHHHHhccCHHHHHHHHHHH
Confidence 775 35667777777665
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.73 E-value=1.6e+02 Score=30.31 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=83.0
Q ss_pred hccCCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHcCCChHHHHHHHhhcCCCCc---chHHHHHHHHHhCCChhHH
Q 006705 69 VNQRTLRGGQRVHAHMIKTCYRPPVYL--RTRLIVFYNKCECLSDARKMFDEMRERNV---VSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 143 (634)
+..|+++. .+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++. ..++ .+...+..|+.+.+
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHH
Confidence 34566544 444455676665432 34455666677888776666654333322 1223 34455667776654
Q ss_pred HHHHHHHHHCCCCCChh---hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCHHHHHHHHc
Q 006705 144 LNLFIRMLRSDTEPNEF---TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV--GSSLLDMYAKAGRIHEARGVFE 218 (634)
Q Consensus 144 ~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~ 218 (634)
..+++ .|...+.. .-.+.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 44443 33221110 011233334445554 34455566665554321 1223444456777776666665
Q ss_pred cCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh
Q 006705 219 CLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 219 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 260 (634)
.-.. +|..-++.+..+ +..|+.+ +.+.+.+.|..|+.
T Consensus 157 ~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred cCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCc
Confidence 4332 222233333332 3344433 34445556655554
No 354
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.10 E-value=1.3e+02 Score=27.03 Aligned_cols=97 Identities=9% Similarity=0.154 Sum_probs=60.2
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----
Q 006705 318 FDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK----- 392 (634)
Q Consensus 318 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----- 392 (634)
.++-.++..+.|-....+-++.-+.+++-+.|- ...=.+++-.|.+.-.+.+|+++++.|.+..
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L-----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL-----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333334455566666655555544444333221 1122355667778888889998888876541
Q ss_pred -CC------ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 393 -DG------FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 393 -~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
+| ..+.-..-|.-...+.++|.+|.|+.++++-
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 01 2334556777788899999999999999875
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.00 E-value=94 Score=25.04 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999877
No 356
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.72 E-value=3.5e+02 Score=31.52 Aligned_cols=93 Identities=4% Similarity=-0.053 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSR-RVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~-~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. .++...+..+.+. |+...-...+.+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D----~~~~VR~~A~~a 861 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALTD----PHLDVRKAAVLA 861 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhcC----CCHHHHHHHHHH
Confidence 44555566666666666554332 23333444554444555555655553 3455555555432 455555555556
Q ss_pred HhccCcHHHHHHHHHHhhh
Q 006705 372 CSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~ 390 (634)
+........+...+....+
T Consensus 862 L~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 862 LTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhccCCCHHHHHHHHHHHh
Confidence 6554333345555555554
No 357
>PRK12798 chemotaxis protein; Reviewed
Probab=57.88 E-value=2.3e+02 Score=29.06 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=114.3
Q ss_pred cCCHHHHHHHHhhcCC----CChhhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCcH
Q 006705 308 CGSLTYSRRVFDNMSE----RTVISWNAMLVGY-SKHGMGREVVELFNLMREENKVKPDS----VTYLAVLSGCSHGGME 378 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~ 378 (634)
.|+..+|.+.|..+.. +....+-+|+.+- ....++.+|+++|+..+-. .|-. ....--+......|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl---aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL---APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh---CCchHHHHHHHHHhhHHHHhcCcH
Confidence 5888888888888763 3556677777764 4456789999999988754 4543 2333334456788999
Q ss_pred HHHHHHHHHhhhccCCccCChHHH-HHHHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 379 DRGLAVFHEIVDCKDGFEPEIEHY-GCVVDMLGR---AGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~~p~~~~~-~~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
+++..+-..-.++| .-.|-...| ...+..+.+ .-..+.-..++..|.-.--...|..+...-...|+.+.|....
T Consensus 202 ~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 98877766666654 434433322 222333333 3344555666777743334557777888888999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHhhc-----CCcHHHHHHHHHHhh
Q 006705 455 QRLMEIEPENAGNYVILSNLYASA-----GRWEDVTRVRELMKE 493 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~ 493 (634)
+++..+... ...-...+..|... .+.++|.+.+..+..
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 999887644 23333444444322 346666666655543
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=25 Score=32.60 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 414 RVGEALEFIKNM-PFEPTAAI-LGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 414 ~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+++.|+..+.+. .+.|++.+ |+.=+-.+.+..+++.+..-..+++++.|+.......|.........+++|+.++.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 444444444332 34555533 3444445555666666666667777777776666667777777777777777777766
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.48 E-value=1.1e+02 Score=29.21 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhc--CCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVE--GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
=|.+++..+++.+++...-+--+. .++|.. .-..|-.|++.+....+.++-..-.+..-.-+..-|.+++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 367778888888877655443321 233322 2233334555555555555554444432222233344444444
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.36 E-value=34 Score=31.31 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
.+.-+..+.+.+++++|+...++- ..+| |...-..+...++..|+++.|..-.+-+-++.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566777888888888876653 3344 44556667788888999998888888888888874
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.34 E-value=1.9e+02 Score=28.00 Aligned_cols=57 Identities=7% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556677778888887777766642 556677777788888876677766666543
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.92 E-value=1.3e+02 Score=25.84 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc
Q 006705 224 DVVSCTAIISGYAQLGL-DEEAIELFRKLQVEGMISNYVTYASVLTALSGL 273 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 273 (634)
+-.+|++++.+..+..- ---+..+|..|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55678888888766555 345677888888877888888888888887654
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.35 E-value=18 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 470 ILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999987543
No 364
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.66 E-value=1.8e+02 Score=27.20 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=81.6
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (634)
-+..|++.-++.-|-..++++.+| +.+-.++++ |.+..+.+---++.+-...++++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 345566666666666666666554 122222322 444444433334444444555555554444443 2345555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006705 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVK 359 (634)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 359 (634)
...+..-.. .-| +-.+..+|+-..+|.+.....|+..+. .+++++|.+++.++.+. |..
T Consensus 212 lNnLQst~~------------------g~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~l-gys 270 (333)
T KOG0991|consen 212 LNNLQSTVN------------------GFG-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKL-GYS 270 (333)
T ss_pred HHHHHHHhc------------------ccc-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHc-CCC
Confidence 444332221 111 223456777777788877777887655 46689999999999988 888
Q ss_pred CCHHHHHHHHHHH
Q 006705 360 PDSVTYLAVLSGC 372 (634)
Q Consensus 360 pd~~t~~~ll~a~ 372 (634)
|.... +++...+
T Consensus 271 p~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 271 PEDII-TTLFRVV 282 (333)
T ss_pred HHHHH-HHHHHHH
Confidence 86642 3344444
No 365
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=55.56 E-value=3.9e+02 Score=31.12 Aligned_cols=256 Identities=6% Similarity=-0.097 Sum_probs=139.1
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC
Q 006705 214 RGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 214 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 293 (634)
..+...+.++|...--..+..+.+.+. +++...+.+... .+|...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555567777776667777777665 445555555553 234444445555554443221122233333332 5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
|..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHHH
Confidence 666666666666654321 22345566667777777777777777655432 22222 2356666666666766
Q ss_pred ccCcHHH-HHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 374 HGGMEDR-GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 374 ~~g~~~~-a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
..+..+. +...+..+.+ .++..+-...+.++++.|..+.+...+..+-..+|..+-...+.++...+.. ++..
T Consensus 768 ~~~~~~~~~~~~L~~ll~-----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG-----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred HhccccchhHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHH
Confidence 6665432 3344445443 3567788888888888887665544343332245655556666777666653 3444
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.+..+++ +| +...-..-+.++.+.+.-..+...+....+
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4444442 22 234444556666664333456666655543
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.86 E-value=39 Score=29.96 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC----cHHHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR----WEDVTRVRELM 491 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 491 (634)
+++|..-+++++.++|+...++.+++++|...|. ..+|.+.|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3456667788889999999999999999987764 33444444444
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.51 E-value=2e+02 Score=27.51 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-....|... .+|...-.+++. |
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~---------------e~dlfi~RaVL~-y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS---------------EADLFIARAVLQ-Y 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc---------------chhHHHHHHHHH-H
Confidence 357777888899999999999988875443333322222222111122111 122222223332 4
Q ss_pred hccCcHHHHHHHHHHhhhc
Q 006705 373 SHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~ 391 (634)
...+++..|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 4467788888777666653
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.40 E-value=1.3e+02 Score=28.78 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=58.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 333 LVGYSKHGMGREVVELFNLMREE-NKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
|++++..+++.+++...-+--+. ..++|...-...+ .|++.+.+..+.++-..-.... + .-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p-~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDP-S-NQSLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCc-c-cCCchhhHHHHHHHHH
Confidence 77888888888887654433221 0244544444333 4888899888888777766542 2 2234448888877764
Q ss_pred -----cCCHHHHHHHHHhC
Q 006705 412 -----AGRVGEALEFIKNM 425 (634)
Q Consensus 412 -----~g~~~~A~~~~~~m 425 (634)
.|.++||++++..-
T Consensus 166 ~VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHHhccccHHHHHHHHhcC
Confidence 69999999998543
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.15 E-value=68 Score=21.93 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 468 YVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456778899999999999999999753
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.02 E-value=1.1e+02 Score=24.46 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||.+.|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45566666666665553 233333334455677888888855555556688888876644 467777777777777765
Q ss_pred c
Q 006705 355 E 355 (634)
Q Consensus 355 ~ 355 (634)
+
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 4
No 371
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.88 E-value=80 Score=28.58 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=14.9
Q ss_pred HHHhcCChHHHHHHHHHHhhc
Q 006705 234 GYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 234 ~~~~~g~~~~A~~~~~~m~~~ 254 (634)
-+..+|++++|..-|.+.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 355677888888777777664
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.85 E-value=36 Score=25.49 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 006705 402 YGCVVDMLGRAGRVGEALE 420 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~ 420 (634)
..+|+.+|+..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.82 E-value=32 Score=25.72 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=34.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 006705 338 KHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
...+.++|+..|+...+...-.|+. .++..++.+++..|++++.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999998887762222332 57788888899999888876653
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.60 E-value=1e+02 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888999999998888876
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.67 E-value=11 Score=36.82 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 412 AGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 412 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
.|.+++|++.|... +..|. ...+..=.+++.+.+....+++-+..+.+++|+....|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45667777766654 33333 23333333556667777777777888888888877778777777788888888888888
Q ss_pred HHhhCCCccCC
Q 006705 490 LMKEKAVTKDP 500 (634)
Q Consensus 490 ~m~~~~~~~~~ 500 (634)
...+.++....
T Consensus 207 ~a~kld~dE~~ 217 (377)
T KOG1308|consen 207 LACKLDYDEAN 217 (377)
T ss_pred HHHhccccHHH
Confidence 88877775443
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.33 E-value=33 Score=22.38 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhc
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 377
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.33 E-value=1.5e+02 Score=31.33 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC--Chh---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSER--TVI---SWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
.|+.-|.+++++++|..++..|.-. ... +.+.+...+.+..-.++....++.+.-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5677788888888888888888632 122 233334444444444444445554443
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.04 E-value=1e+02 Score=23.70 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 77 GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 77 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
+.++++.+.+.|+- +....+.+-..-...|+.+.|+++++.++ +....|...++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44556666666532 12222222222224567777777777777 6666777777777776665444
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.72 E-value=4.4e+02 Score=29.92 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMS 322 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~ 322 (634)
.|+..+...|++++|...++++.
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666666777777776666654
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.70 E-value=2.5e+02 Score=27.18 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHccCC-----CCChhhHHHHHHHHHhcCChHH
Q 006705 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLP-----ERDVVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 191 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~ 243 (634)
.++..+....+..+++.+++..-.++++... ..|...|..+|......|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 4444455556666666666666665555432 2355566666666666666543
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.38 E-value=30 Score=26.77 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
..++...+.+|+|...-..+...|...|++++|.+.+-.+..+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566677889998899999999999999999999998887653
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.36 E-value=1.1e+02 Score=25.36 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
..+-+...... .+.|++...-..|.||.+.+++..|.++|+.++. ...+....|-.+++
T Consensus 68 vrkglN~l~~y-DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~---K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDY-DLVPSPKVIEAALRACRRVNDFATAVRILEAIKD---KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhcc-ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH---hcccHHHHHHHHHH
Confidence 33444455555 7889999999999999999999999999999875 34444556766654
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.35 E-value=58 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
.|++.+|..++..+...|+.++|.+...++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555555544444
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.90 E-value=2.6e+02 Score=27.10 Aligned_cols=65 Identities=5% Similarity=0.029 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 358 VKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 358 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
-.++..+...++..++..+++.+-.+++....... +...|...|...|......|+..-...+++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~-~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNS-VPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccC-CCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34444444444444444445444444444443211 122244444444444444444444444443
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.66 E-value=3.4e+02 Score=28.41 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHH---hhCCCccCCc----eeEEEECCEE
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELM---KEKAVTKDPG----RSWIELDQIL 511 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~----~s~~~~~~~~ 511 (634)
.++....+...+.+-.+.+....-+.+.....-.+.+.-.|++..|.+++... .+.|..+.|. +.|+.++-+.
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 33444455555555444444444455555666677888899999999987654 2334333332 3465543222
Q ss_pred EEEEeCCCCCcchHHHHHHHHH-HHHHHHHcCcccCCccc
Q 006705 512 HTFHASDRSHPMREELSAKVKQ-LSVKFKEAGYVPDMSCV 550 (634)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~-l~~~m~~~g~~p~~~~~ 550 (634)
+.+ ..|......+.++.+ .-.++ ..|++|.+.+.
T Consensus 294 ~~~----~~y~~~~~~F~kAL~N~c~qL-~~g~~~~~~~t 328 (696)
T KOG2471|consen 294 YQL----GCYQASSVLFLKALRNSCSQL-RNGLKPAKTFT 328 (696)
T ss_pred eeh----hhHHHHHHHHHHHHHHHHHHH-hccCCCCccee
Confidence 211 223323334444443 23333 45888876543
No 386
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.10 E-value=64 Score=29.86 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCchH-------HHHHHHHHhccCC--C----CCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 433 ILGSLLGACRVHYNVDI-------GEFVGQRLMEIEP--E----NAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.+.-+.+.|+..++.+. |...++++.+.+. . .......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445566777777443 4444455544332 1 13455678899999999999999999997653
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.16 E-value=1.5e+02 Score=32.53 Aligned_cols=180 Identities=15% Similarity=0.240 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh----------hhHHHHHHHHhcccchHHHHHHHHHHHHcC--CCCch
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNY----------VTYASVLTALSGLAALGHGKQVHSHVLRFE--IPSYV 295 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~ 295 (634)
-..|+-.|....+++..+++.+.++.. ||. +.|...++-=-+-|+-++|..+.--+++.. +.||
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD- 279 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD- 279 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc-
Confidence 334555677777788888888877653 332 234444444445677777777766666543 2333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVT---YLAVLSGC 372 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t---~~~ll~a~ 372 (634)
+||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-
T Consensus 280 --------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 --------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHh
Confidence 46667753 33321 12335555667788888888764 5676643 44444443
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.+. ++.-.+ +. .+-..|-..++|.|.++.-.+.++-. ..+.+.....++..|.+
T Consensus 334 G~~--Fens~E----lq----------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 334 GEH--FENSLE----LQ----------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--ccchHH----HH----------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 111111 11 11123445677888888777766532 23455556678888899
Q ss_pred HHHHHhccCCC
Q 006705 453 VGQRLMEIEPE 463 (634)
Q Consensus 453 ~~~~~~~~~p~ 463 (634)
+.+++.++.|+
T Consensus 388 Aae~mfKLk~P 398 (1226)
T KOG4279|consen 388 AAEMMFKLKPP 398 (1226)
T ss_pred HHHHHhccCCc
Confidence 99999998886
No 388
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=47.10 E-value=83 Score=24.00 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 77 GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 77 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
...+++.+.+.|+- +....-...+...+.+.|.++++..+.+...+|.++.+++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34566777766632 2222223333455678888888888888888888888888777765444
No 389
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=46.70 E-value=69 Score=28.46 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=28.8
Q ss_pred chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCc
Q 006705 447 VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVT 497 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 497 (634)
++.|...|+++...+|.| ..|..-+.+. .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 456777888888899986 5666555554 3577788887776653
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.35 E-value=1.4e+02 Score=22.95 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=28.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 006705 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 346 (634)
..|+.+.|+++++.+. +....|...++++-+.|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777777655543
No 391
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.32 E-value=1.5e+02 Score=27.90 Aligned_cols=89 Identities=15% Similarity=-0.016 Sum_probs=65.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHHH-------HH----HHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 406 VDMLGRAGRVGEALEFIKNM---------PFEPTAAILGS-------LL----GACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~-------ll----~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+-+.+.|++.||..-+++. ..+|...-|.- |+ .++...|++-++++....++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 44466777777777666543 34566665532 22 344567788888888899999999999
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+|..-+.+.+..=+..+|..=|....+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999888888888888888888777653
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.10 E-value=99 Score=33.34 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
+++.+|..+|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 445555555555555555554443
No 393
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=2.9e+02 Score=26.61 Aligned_cols=49 Identities=12% Similarity=-0.052 Sum_probs=33.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHH-------HHHHHHHHhccCcHHHHHH
Q 006705 334 VGYSKHGMGREVVELFNLMREENKVKPDSVT-------YLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t-------~~~ll~a~~~~g~~~~a~~ 383 (634)
.-..+.+++++|+..+.++... |+..|..+ ...+...|...|+...-.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456678889999999999888 88777654 3445555666666544433
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.90 E-value=34 Score=28.55 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=20.7
Q ss_pred hHHHhhhcCcHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 006705 32 NLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNAC 68 (634)
Q Consensus 32 ~i~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~ 68 (634)
.++++....++-.+|..|...|-.||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 355555556666677777777766653 45555543
No 395
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.84 E-value=1e+02 Score=26.00 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHhc-cCCCC-CchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 446 NVDIGEFVGQRLME-IEPEN-AGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 446 ~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+..++..+++.+.+ -.|.. .....-|.-.+++.|+++++.++.+...+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34556666776665 33332 223345666677788888888877777543
No 396
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.59 E-value=26 Score=38.69 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 418 (634)
+.++++.+.+.+.-.-- | .++|.-+.+.|-++-|+.+.+.=..+ ..+...+|+++.|
T Consensus 606 ~k~ydeVl~lI~ns~Lv-G--------qaiIaYLqKkgypeiAL~FVkD~~tR--------------F~LaLe~gnle~a 662 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLV-G--------QAIIAYLQKKGYPEIALHFVKDERTR--------------FELALECGNLEVA 662 (1202)
T ss_pred hhhhHHHHHHHHhcCcc-c--------HHHHHHHHhcCCcceeeeeecCcchh--------------eeeehhcCCHHHH
Confidence 45566666655433222 1 23455566777777777665443322 2334578999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 419 LEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 419 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
++.-++.. |..+|..|......+|+.+.++..+++....+ -|.-+|.-.|+.++-.++.+
T Consensus 663 le~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 663 LEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHHHHH
Confidence 99888874 77899999999999999999999888765433 33344455555554444433
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.31 E-value=3.3e+02 Score=26.33 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHH--hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHH---HcCCHHHHHHHHH
Q 006705 360 PDSVTYLAVLSGC--SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLG---RAGRVGEALEFIK 423 (634)
Q Consensus 360 pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~---~~g~~~~A~~~~~ 423 (634)
|-...-.-++++- +...++..|..+|-+..+.+.....+......|--++. -.++.++...+++
T Consensus 202 pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~ 270 (421)
T COG5159 202 PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLR 270 (421)
T ss_pred HHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 3334444444442 34456778888887777644334455555555444433 2345555555554
No 398
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.21 E-value=2.7e+02 Score=25.13 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHhccCCcHHHHHHHHHHHH
Q 006705 165 VLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
++-.|-+..++.+++++++.+.+
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.84 E-value=52 Score=31.84 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
-||..|..-.+.|++++|+.++++.++. |+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~L-G~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERL-GSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCchHHHHHHHHh
Confidence 4678888899999999999999999988 7776666665444
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.48 E-value=48 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASV 266 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 266 (634)
-||..|..-.+.|++++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678999999999999999999999998876555555443
No 401
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.00 E-value=6.1e+02 Score=28.82 Aligned_cols=274 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHH
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALN 145 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (634)
+.|...|.++.|+++-+.-.+.- ..++-.-.+.|...+++..|-+++-++ ..++..+.--|....+.+ ++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~l----e~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDAL----ETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHH
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH------HhccCCcH----HHHHHHHHHHH---------hCCCCchHHHHHHHHHHHh
Q 006705 146 LFIRMLRSDTEPNEFTFATVLTS------CAGAFGFE----LGKQIHSLIIK---------SNFESHIYVGSSLLDMYAK 206 (634)
Q Consensus 146 ~~~~m~~~g~~p~~~t~~~ll~~------~~~~~~~~----~a~~~~~~~~~---------~g~~~~~~~~~~li~~y~~ 206 (634)
.|-.=+-..++|...+=..+|.. +.+.++++ ++..-++.-.+ .....+...+.+.......
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH-------------------------hhcCCccChh
Q 006705 207 AGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL-------------------------QVEGMISNYV 261 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------------------~~~g~~p~~~ 261 (634)
.|+.+.+..+-.-|.+ |..++.-+.+.+.+++|++++..- ...+-..+..
T Consensus 517 ~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~ 591 (911)
T KOG2034|consen 517 HGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLDPNR 591 (911)
T ss_pred ccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccCchh
Q ss_pred hHHHHHHHHhcc---cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHhhcCCCChhhHHHHHHHH
Q 006705 262 TYASVLTALSGL---AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS--LTYSRRVFDNMSERTVISWNAMLVGY 336 (634)
Q Consensus 262 t~~~ll~~~~~~---~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~m~~~~~~~~~~li~~~ 336 (634)
-...++.-+.+. .....+....+.....-..-++.++|.++..|++..+ +-.=.+.-..+......-..--+..|
T Consensus 592 li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc 671 (911)
T KOG2034|consen 592 LIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLC 671 (911)
T ss_pred hhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHH
Q 006705 337 SKHGMGREVVELFNLMR 353 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~ 353 (634)
.+.+.-..+..++..|.
T Consensus 672 ~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 672 LKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHhCccceeeeHHHHHH
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.23 E-value=3.3e+02 Score=25.54 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
-+..|++.-++.-|-..++++.+|=. +-.++ --|.+..+..---.+.+-...+ +++-+..-..+++ +...|+..+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-SRCAi-LRysklsd~qiL~Rl~~v~k~E-kv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-SRCAI-LRYSKLSDQQILKRLLEVAKAE-KVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-hhhHh-hhhcccCHHHHHHHHHHHHHHh-CCCCCcchHHHhh--hhccchHHH
Confidence 35567777777777777777666521 11111 2233433333333344444444 5655555554444 556888988
Q ss_pred HHHHHHHhhhcc
Q 006705 381 GLAVFHEIVDCK 392 (634)
Q Consensus 381 a~~~~~~~~~~~ 392 (634)
|+..++.-...+
T Consensus 211 alNnLQst~~g~ 222 (333)
T KOG0991|consen 211 ALNNLQSTVNGF 222 (333)
T ss_pred HHHHHHHHhccc
Confidence 888888776543
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.63 E-value=1e+02 Score=20.44 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=21.1
Q ss_pred HhcCChHHHHHHHHHHhhcCCccChhhHHHHHH
Q 006705 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 268 (634)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666667777777777776666666655543
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.11 E-value=3.6e+02 Score=26.59 Aligned_cols=49 Identities=20% Similarity=0.047 Sum_probs=25.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHH
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDS---VTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
+--+.|+..+|.+.|+.+.+. + |-. .....++.+|.....+.+...++.
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~-pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--F-PLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777776654 2 211 122345556655555544444443
No 405
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.52 E-value=3.2e+02 Score=24.83 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=53.6
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHhcCCHHHHHHHHccCCCCChhh--HHHHHHHHHhcCCh
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHI----YVGSSLLDMYAKAGRIHEARGVFECLPERDVVS--CTAIISGYAQLGLD 241 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~ 241 (634)
.+...++++.|...+...+.. +.|. .+---|.......|.+++|.+.++....++-.+ -..-...+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 345566666666666655532 1221 112234556677788888888888877654332 22233567888888
Q ss_pred HHHHHHHHHHhhcC
Q 006705 242 EEAIELFRKLQVEG 255 (634)
Q Consensus 242 ~~A~~~~~~m~~~g 255 (634)
++|..-|.+.+..+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888887764
No 406
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.48 E-value=4.9e+02 Score=26.97 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhhHHHhhhcCcHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCC--
Q 006705 30 PQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCE-- 107 (634)
Q Consensus 30 ~~~i~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-- 107 (634)
+..+.-|+..|+..+.++-.++.|+ +.+....+=++....+.-..+..+.-.+.+.+...+...-+.+..++.|.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v--sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~s 295 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV--SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGS 295 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC--CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccc
Q ss_pred ------ChHHHHHHHhhcCCCCcc---------------------------hHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006705 108 ------CLSDARKMFDEMRERNVV---------------------------SWTAMISAYSQKAHSFEALNLFIRMLRSD 154 (634)
Q Consensus 108 ------~~~~A~~~~~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 154 (634)
+...|...|+.+..+.+. .-..+|+-|..+|+..+..+.++++-...
T Consensus 296 lddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E 375 (645)
T KOG0403|consen 296 LDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPE 375 (645)
T ss_pred cccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCcc
Q ss_pred CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-------------HHHHHHHHccCC
Q 006705 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR-------------IHEARGVFECLP 221 (634)
Q Consensus 155 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-------------~~~A~~~~~~m~ 221 (634)
..|-..-+..-+..=.+...-+.|-.++..+--. +-++..+-+.....+-...+ .=-|+.+.+.+.
T Consensus 376 ~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVL 454 (645)
T KOG0403|consen 376 YNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVL 454 (645)
T ss_pred ccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhccc
Q ss_pred CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh---------------hhHHHHHHHHhcccchHHHHHHHHH
Q 006705 222 ER-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY---------------VTYASVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 222 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------~t~~~ll~~~~~~~~~~~a~~i~~~ 285 (634)
.| +...+..-+..-.+....-+.-+.+-.|...|-+... .-...++.-|...|+..+|.+...+
T Consensus 455 ap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~Cike 534 (645)
T KOG0403|consen 455 APTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKE 534 (645)
T ss_pred ccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHH
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTY 365 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~ 365 (634)
+- ..+-....++.+++-..-+.|+-..-..+++..-....+|-|.|-.+|.+-.+.-.-+.+ .++-...-|
T Consensus 535 Lg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsL--------DvPna~ekf 605 (645)
T KOG0403|consen 535 LG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSL--------DVPNAYEKF 605 (645)
T ss_pred hC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCccccc--------CCCcHHHHH
Q ss_pred HHHHHHHhccC
Q 006705 366 LAVLSGCSHGG 376 (634)
Q Consensus 366 ~~ll~a~~~~g 376 (634)
+....-|.+.|
T Consensus 606 ~~~Ve~~~~~G 616 (645)
T KOG0403|consen 606 ERYVEECFQNG 616 (645)
T ss_pred HHHHHHHHHcC
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.23 E-value=1.2e+02 Score=20.22 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=16.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVL 166 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 166 (634)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555554444444
No 408
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.05 E-value=4.9e+02 Score=26.92 Aligned_cols=47 Identities=4% Similarity=-0.091 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHh
Q 006705 191 ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 237 (634)
Q Consensus 191 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 237 (634)
.++..+....+.++.+.+..+....+..-+..++...-.+.+.++..
T Consensus 97 d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 34444566666666666665555555444444444443344444443
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.60 E-value=47 Score=23.54 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 229 TAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 229 ~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
-.+|.+|.+.|++++|.++..++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567888888888888888777754
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.52 E-value=41 Score=28.13 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 338 KHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 338 ~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
..|.-..|..+|++|.+. |-+||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~-G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLER-GNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhC-CCCCcc--HHHHHHHh
Confidence 346667899999999999 899986 56666554
No 411
>PHA03100 ankyrin repeat protein; Provisional
Probab=36.49 E-value=5.3e+02 Score=27.13 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCCCCH
Q 006705 44 KALIEMATLGLEMRF 58 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~ 58 (634)
++++.+...|..|+.
T Consensus 49 ~ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 49 DVVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHHcCCCCCC
Confidence 455556666665543
No 412
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.39 E-value=54 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREE 355 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (634)
.-.+|.||.+.|++++|.++.+++...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345688888888888888888877653
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.90 E-value=24 Score=36.27 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=63.3
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV-VDMLGRAGRVGEALEFIKNM-PFEPTAA-ILGSLLGACRVHY 445 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~~ 445 (634)
+......+.++.|..++.++++ +.|+...|-+. ..++.+.+++..|+.=..+. ...|+.. .|--=..+|...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556677888999999999884 47765555433 36777888888887665554 4334322 2222235666677
Q ss_pred CchHHHHHHHHHhccCCCCC
Q 006705 446 NVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.+|...++....+.|+++
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcH
Confidence 78888888899899999864
No 414
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.31 E-value=1.5e+02 Score=22.88 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCC
Q 006705 78 QRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAH 139 (634)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (634)
..+++.+.+.|+-.+ ...-...+..-+.+.+.++++.++.+...+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gvlt~----~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILTD----SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCCH----HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 345566666553221 1122222334566777788888877777778877777765554
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.09 E-value=5.3e+02 Score=26.70 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 006705 328 SWNAMLVGYSK---HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375 (634)
Q Consensus 328 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~ 375 (634)
.+..+++++.+ .++.+.|+..+..|.+. |..|....-..+..++-..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEA-GEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhh
Confidence 34445555554 47889999999999988 8888766555555454433
No 416
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.95 E-value=46 Score=19.05 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 446 NVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+.+.+..+++++....|.++..+...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445556666666666665555544443
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.60 E-value=3.3e+02 Score=27.00 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHC---CCCCChhhHHH--HHHHHhccCCcHHHHHHHHHHHH
Q 006705 132 SAYSQKAHSFEALNLFIRMLRS---DTEPNEFTFAT--VLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
...-+.++.++|+++++++.+. --.|+.+.|.. +...+...||+..+++++....+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334445667777777776542 12344444432 23334455666666666665555
No 418
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.56 E-value=5.5e+02 Score=27.97 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=11.5
Q ss_pred hHHHhhhcCcHHHHHHHHHH
Q 006705 32 NLKTLCSNGQLTKALIEMAT 51 (634)
Q Consensus 32 ~i~~~~~~~~~~~~~~~m~~ 51 (634)
.+..+.-.|...++-.-+..
T Consensus 154 ~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 154 YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHTT-HHHHHHHH-T
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 56666677777666555533
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.95 E-value=5.3e+02 Score=26.38 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
+.-+.+-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++........+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45577789999999999999988653 1233555556555556666666655555443
No 420
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.86 E-value=6.3e+02 Score=27.19 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCC------------hHHHHHHHHHHHHcCCHHHHHHHHHhC--------------
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPE------------IEHYGCVVDMLGRAGRVGEALEFIKNM-------------- 425 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m-------------- 425 (634)
+.+...++++..-|...+. -..|+ +.+.-.+.+++-..|+.+-|.+++.+.
T Consensus 248 ~~hs~sYeqaq~~F~~av~---~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI---VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred eecchHHHHHHHHHHHHHh---hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc
Q ss_pred ---------CCCCCHHHHHHHH---HHHHhcCCchHHHHHHHHHhccCCC-CCchHHHHHHHHh-hcCCcHHHHHHHHHH
Q 006705 426 ---------PFEPTAAILGSLL---GACRVHYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYA-SAGRWEDVTRVRELM 491 (634)
Q Consensus 426 ---------~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 491 (634)
...-|...|-+|- ....+.|-+..|.+..+.++.++|. ||-....+|+.|+ ++..+.--+++++..
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred hhCC
Q 006705 492 KEKA 495 (634)
Q Consensus 492 ~~~~ 495 (634)
...+
T Consensus 405 e~~n 408 (665)
T KOG2422|consen 405 ENMN 408 (665)
T ss_pred Hhhc
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.83 E-value=1.2e+02 Score=27.32 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 426 PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 426 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
...|+..++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467888888888888888888888888888888777
No 422
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.58 E-value=2.3e+02 Score=23.56 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 143 ALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 143 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
..+.++.+..-.+.|+.......|++|.+.+|+..|.++++-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33445555556777888888888888888888888888887664
No 423
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.15 E-value=6.6e+02 Score=27.25 Aligned_cols=275 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCHHHHHHHHccCCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHhh-------cCCccChhhHHHHHHHHhccc
Q 006705 208 GRIHEARGVFECLPE-RDVVSCTAIISGYAQL-----GLDEEAIELFRKLQV-------EGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 208 g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~ 274 (634)
|+...|.+.++...+ .++..-..+...|..- .+.+.|+.+|+.+.. .| +......+-.+|.+..
T Consensus 226 ~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Q ss_pred chHH-----HHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-----ChH
Q 006705 275 ALGH-----GKQVHSHVLRFEIPSYVVLQNSLIDMYSK-CGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-----MGR 343 (634)
Q Consensus 275 ~~~~-----a~~i~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 343 (634)
.... |..++....+.| .|+....-..+..... -.+...|.+.|.......-..=.--+..+...| +..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH-------HHcCCHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML-------GRAGRVG 416 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~-------~~~g~~~ 416 (634)
.|..++++.-+. | .|-..--...+..+.. +.++.+...+..+... +.+.-...-..+.+.. ....+.+
T Consensus 382 ~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~--g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 382 LAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL--GYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh--hhhHHhhHHHHHHHhccccccccccccchh
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHhccCCCCCchHHHHHHHH----hhcCCcHHHHHHH
Q 006705 417 EALEFIKNMPFEPTAAILGSLLGACRVH----YNVDIGEFVGQRLMEIEPENAGNYVILSNLY----ASAGRWEDVTRVR 488 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~ 488 (634)
.+..++.+....-+......|-..|..- .+.+.+...+.++.... ......|..++ .-.. +..|.+.+
T Consensus 457 ~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 457 RAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHH
Q ss_pred HHHhhCC
Q 006705 489 ELMKEKA 495 (634)
Q Consensus 489 ~~m~~~~ 495 (634)
+...+.+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
No 424
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.65 E-value=4.3e+02 Score=25.87 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=36.0
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 229 TAIISGYAQ---LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 229 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
-.+|+++.+ ..+++.|+-++.+|.+.|..|....-..++.+.-..|
T Consensus 127 Yd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 127 YEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345666654 4789999999999999998888887777777776655
No 425
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.46 E-value=1.4e+02 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHccC
Q 006705 201 LDMYAKAGRIHEARGVFECL 220 (634)
Q Consensus 201 i~~y~~~g~~~~A~~~~~~m 220 (634)
+.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444444
No 426
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.17 E-value=6.9e+02 Score=28.51 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=85.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006705 303 DMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 382 (634)
.....||+++.|.+.-.++. |...|..|...-...|+.+-|...|++.+.- +..+| .|.-.|+.++-.
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf-----ekLsf-----LYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF-----EKLSF-----LYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh-----hheeE-----EEEEeCCHHHHH
Confidence 34567899999988766655 4568999999999999999999999877542 22222 355578888776
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
++......+ .|... .....+| .|+.++=.++++..+..|- .|. .-..||.-++|+++.++...
T Consensus 719 Km~~iae~r-----~D~~~-~~qnalY--l~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR-----NDATG-QFQNALY--LGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh-----hhhHH-HHHHHHH--hccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 665554432 12211 1112222 5888888888888754332 221 22467888888888877765
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.83 E-value=1.1e+02 Score=32.39 Aligned_cols=108 Identities=6% Similarity=0.061 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCCCHhh--HHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHcCCChHHHHHHHh
Q 006705 44 KALIEMATLGLEMRFEE--YDTLLNACVN-QRTLRGGQRVHAHMIKTCYRPPV---YLRTRLIVFYNKCECLSDARKMFD 117 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~ 117 (634)
+....|...|.+-+... +..+..+|.+ .|...+|.......+-. .++. ...-+|...+-+.|...+|.-++.
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf--~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHF--SSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh--CCcccccchhhhHHHHHHHcccccchhheee
Confidence 44455555554333322 3344444433 35555555544433322 2221 122344455556666666655554
Q ss_pred hcCC-CCcch--HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006705 118 EMRE-RNVVS--WTAMISAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 118 ~~~~-~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
.... .+.++ +-.+-++++..+.+...+..|+...+.
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 3322 11111 333445555555555555555555444
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.91 E-value=2.3e+02 Score=24.25 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=18.4
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcC
Q 006705 166 LTSCAGAFGFELGKQIHSLIIKSNFESHI-YVGSSLLDMYAKAG 208 (634)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g 208 (634)
+..+...++.-.|..+|+.+.+.+...+. .+|+ -++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr-~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYR-TLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHH-HHHHHHHCC
Confidence 34444444444555555555554433332 2233 334444444
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.90 E-value=1.2e+02 Score=32.15 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 200 LLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
|.+...+.|-.-+|-.++.+-. ...+.++-.+..+|....+.+.|++.|++..+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3344444444444444443321 123334445555555556666666666555443
No 430
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.68 E-value=3.1e+02 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALE 420 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~ 420 (634)
...+..|..++.+.|++++++.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHH
Confidence 3445556666677777666543
No 431
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.65 E-value=7.4e+02 Score=27.00 Aligned_cols=271 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCC-cchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006705 75 RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERN-VVSWTAMISAYSQKAHSFEALNLFIRMLRS 153 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 153 (634)
+...++.+.....--.+....++.|+... +.=+.++-.++++++.. . ...|..++++....|-.....-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHH
Q 006705 154 DTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 232 (634)
Q Consensus 154 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li 232 (634)
.+.+ ........+-........+....+++.+......+...++.+.+-+|+ +|+
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~------------------------~lv 425 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYG------------------------SLV 425 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHH------------------------HHH
Q ss_pred HHHHhcCCh------HHHHHHHHHHhhcCC-ccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 233 SGYAQLGLD------EEAIELFRKLQVEGM-ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 233 ~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
.-++..... ++....+.+...... .-|..--...|.++.+.|.......+...+. ........+-...+.++
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHH
Q ss_pred Hhc--CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 306 SKC--GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 306 ~~~--g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
.+. ...+.+..++-.+-.......-.-+.+|...=+..--...++.|...-...|+...-..+.+..
T Consensus 505 r~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 432
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.43 E-value=3.9e+02 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=14.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.-|.-|.+.|+++.+...|.....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 345556666777776666666554
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.10 E-value=1.5e+02 Score=25.35 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 415 VGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 415 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
-+.|.++.+-|+ ...............|++..|..+.+.+...+|+|...-....++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 355666777664 333333444556678999999999999999999988777777777766554
No 434
>PRK12357 glutaminase; Reviewed
Probab=30.04 E-value=5.6e+02 Score=25.41 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 312 TYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 312 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+.-.+.++++..+.+..=..+...-...++-..|+..+ |+..+.+..|. .+.......|+-....++.-.+...+..
T Consensus 145 ~~il~~~~~lag~~l~~d~~v~~SE~~t~~rNrAlA~~--Lks~g~i~~d~e~~Ld~Yf~qCsi~vt~~dLA~~ga~LAn 222 (326)
T PRK12357 145 ESLYVLIEKMIGKRPAINEEVFQSEWETAHRNRALAYY--LKETGFLESDVEETLEVYLKQCSIEVTTEDIALIGLILAH 222 (326)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHhhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHhC
Confidence 33444444444333222222223333344444454443 44441122232 3444444555555555444444444433
Q ss_pred ccCCccC-------ChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 391 CKDGFEP-------EIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 391 ~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
. |+.| +..+-..+......||.+|.+-++.-+..
T Consensus 223 ~--Gv~P~tg~~vls~~~~r~v~a~M~tcGmYd~SG~fa~~VG 263 (326)
T PRK12357 223 D--GYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVG 263 (326)
T ss_pred C--CcCCCCCCEecCHHHHHHHHHHHHhcCCccchhhHHHHhC
Confidence 2 6555 34455555666667777777777666653
No 435
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.75 E-value=2.1e+02 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=28.5
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 006705 306 SKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 345 (634)
+...+.+.|.++++.++.++..+|.+...++-..|+..-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445577788888888888888888888877777655433
No 436
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.24 E-value=2.3e+02 Score=25.07 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=6.8
Q ss_pred cHHHHHHHHHHHHhC
Q 006705 175 FELGKQIHSLIIKSN 189 (634)
Q Consensus 175 ~~~a~~~~~~~~~~g 189 (634)
.-.|.++++.+.+.+
T Consensus 41 hlSa~eI~~~L~~~~ 55 (169)
T PRK11639 41 AISAYDLLDLLREAE 55 (169)
T ss_pred CCCHHHHHHHHHhhC
Confidence 334444444444444
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.10 E-value=6.4e+02 Score=25.78 Aligned_cols=53 Identities=6% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhhh
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSV--TYLAVLSGCS--HGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 390 (634)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888764 444443 3344444443 34566777777777664
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.01 E-value=4.8e+02 Score=24.34 Aligned_cols=112 Identities=8% Similarity=0.167 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHhhcCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSERTVISW--NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
.++++.|.+.+-. |.+..| .-++.++...|+.+.|+.+++.+.-. -.+......++.+ ...+.+.+|..+-
T Consensus 91 ~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 91 HGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred hHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 3566677666643 322221 24778888888888888888876322 1222233333333 4457888887766
Q ss_pred HHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 006705 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTA 431 (634)
Q Consensus 386 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 431 (634)
+...+. -....+..++..+.....-....+.+-.+|+.+..
T Consensus 164 R~~~~~-----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 164 RSYPDE-----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred HhCchh-----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 655431 11446666666666444323334444455655443
No 439
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.62 E-value=3.5e+02 Score=22.56 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCchHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILG-SLLGACRVHYNVDIGE 451 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~a~ 451 (634)
..+-.++..++.=.|..++|.++++..+..++-...| -++..|+...+.++..
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~ 119 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVI 119 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4445566666777777777777777765444443333 2445555544444333
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.62 E-value=1.4e+03 Score=29.60 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=62.1
Q ss_pred HHHHHHcCCChHHHHHHHhh-cCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHH
Q 006705 99 LIVFYNKCECLSDARKMFDE-MRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFEL 177 (634)
Q Consensus 99 li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 177 (634)
+...|+.-++++...-+... ...|+ ...-|-.....|++..|...|+.+...+ ++...+++.++...-..+.++.
T Consensus 1426 lq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t 1501 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLST 1501 (2382)
T ss_pred HHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhH
Confidence 33466666666666555542 22232 2233444556677777777777776542 2225566666666555566555
Q ss_pred HHHHHHHHHHhCCCCchHHHHH-HHHHHHhcCCHHHHHHHHccCCCCChhhHHHH
Q 006705 178 GKQIHSLIIKSNFESHIYVGSS-LLDMYAKAGRIHEARGVFECLPERDVVSCTAI 231 (634)
Q Consensus 178 a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 231 (634)
..-..+-.... ..+....+++ =+.+--+.++++....... .++...|.+.
T Consensus 1502 ~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1502 EILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred HHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 54433332221 1222222222 2223345555555555544 4455555544
No 441
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.55 E-value=3.1e+02 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=12.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 006705 129 AMISAYSQKAHSFEALNLFIRML 151 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~ 151 (634)
.++..|...++.++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34455555566666666655553
No 442
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.43 E-value=2.9e+02 Score=26.98 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
.++..+.+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35556666666666666665553 344455667777888999999888887765
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.98 E-value=1.1e+02 Score=29.64 Aligned_cols=75 Identities=4% Similarity=-0.085 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHH-HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGS-LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
..|+..|...+.-..+.|.+.+...+|.+. .. +.|+..|-. --.-+..+++++.+..++.+.++++|++|..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 345555655555445556666666666654 22 234555543 2234567888888899999999999988876653
No 444
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.84 E-value=1.4e+02 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 469 VILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 469 ~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..++.++...|++++|.+.+++..+
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577778888999999999988754
No 445
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.81 E-value=24 Score=25.26 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.4
Q ss_pred ceeEEccCCccccccCCccCC
Q 006705 610 RKVSLRDKNRFHHIVEGTCSC 630 (634)
Q Consensus 610 ~~~~~~d~~~~h~~~~g~~sc 630 (634)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356789999999999998653
No 446
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.61 E-value=6.5e+02 Score=25.38 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=62.6
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh----HHHHHHHhhcCCCC---cchH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL----SDARKMFDEMRERN---VVSW 127 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~~~~~~~~~---~~~~ 127 (634)
.|+..+...+++-+....+.++-+.+-.... .+.+.+-....+.+.. .-..+..+.|...+ ....
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~--------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H 143 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFF--------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIH 143 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHH--------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhH
Confidence 3566666666666665555433333222221 1123333333333322 22333444444322 1223
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHH--HHhccCCcHHHHHHHHHHHHhCCCCchHHHHH
Q 006705 128 TAMISAYSQKAHSFEALNLFIRMLRS------DTEPNEFTFATVLT--SCAGAFGFELGKQIHSLIIKSNFESHIYVGSS 199 (634)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 199 (634)
-.++..+.+.+++.-++..++.-... .++|..+..-..-. .|...++++.|+-++...+- .|...+-..
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~ 220 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHI 220 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHH
Confidence 44556666777766655554332211 12222111111111 14567889999888887764 344333333
Q ss_pred HHHHHH
Q 006705 200 LLDMYA 205 (634)
Q Consensus 200 li~~y~ 205 (634)
.+.+|-
T Consensus 221 hlEaYk 226 (422)
T KOG2582|consen 221 HLEAYK 226 (422)
T ss_pred HHHHHH
Confidence 444443
No 447
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=6.7e+02 Score=25.54 Aligned_cols=185 Identities=14% Similarity=0.226 Sum_probs=110.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH-HHhcCChHHHHHHH--HHHHHcCCCCCCHHHHHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVG-YSKHGMGREVVELF--NLMREENKVKPDSVTYLA 367 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~-~~~~g~~~~A~~~~--~~m~~~~g~~pd~~t~~~ 367 (634)
...+..+...+++.|...++++.--+ .+.. .-++|+...|+... +-|.-. .-.||..|-..
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne---------------~i~~Lskkrgqlk~ai~~Mvq~~~~y~-~~~~d~~~k~~ 111 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNE---------------QIRLLSKKRGQLKQAIQSMVQQAMTYI-DGTPDLETKIK 111 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHhc-cCCCCchhHHH
Confidence 34445556666777777666654322 2222 34567777776532 233333 34566666666
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH----------
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL---------- 437 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l---------- 437 (634)
++..+... -++ ++|-+.. -...-..|...+-.+|++++|..++.+.+++ ||+++
T Consensus 112 li~tLr~V---teg-kIyvEvE--------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 112 LIETLRTV---TEG-KIYVEVE--------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFIL 175 (439)
T ss_pred HHHHHHHh---hcC-ceEEeeh--------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHH
Confidence 65543210 000 0111111 1122334667788899999999999988543 44332
Q ss_pred --HHHHHhcCCchHHHHHHHHHhccCCCC-------CchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEE
Q 006705 438 --LGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIEL 507 (634)
Q Consensus 438 --l~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 507 (634)
+..|...+|+-.|.-+..++....-++ ...|..++.+....+.+=++-+.++.....|..+...--|+.+
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 256778888888877776665432221 2358899999999999999999999998887665544446553
No 448
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.48 E-value=7.6e+02 Score=26.13 Aligned_cols=281 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH------HHHHH
Q 006705 110 SDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG------KQIHS 183 (634)
Q Consensus 110 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a------~~~~~ 183 (634)
+.|.+.++-..+-+...+..+-.++--.-+.+....+|++... .-|+...+...|..|...-....+ ..+++
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~ 345 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFR 345 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q ss_pred HHHHhC--CCCchHHHHHHHHHHHhcCCHHHHHHHHc-cCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHhhcCCcc
Q 006705 184 LIIKSN--FESHIYVGSSLLDMYAKAGRIHEARGVFE-CLPERDVVSCTAIISGYAQL--GLDEEAIELFRKLQVEGMIS 258 (634)
Q Consensus 184 ~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p 258 (634)
...+.+ -+.....|..+.-++.+.....++...+. +.-..+...|-.-+....+. .---.-..+|......-..+
T Consensus 346 ~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~ 425 (568)
T KOG2396|consen 346 KAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSE 425 (568)
T ss_pred HHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcch
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVG 335 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 335 (634)
-...+++.. -...-+...-..+.......+.+.....-+.+++-+...|-..+|+.+|..+. .+.+..|..||+-
T Consensus 426 ~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~ 503 (568)
T KOG2396|consen 426 LLISWASAS--EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQF 503 (568)
T ss_pred hHHHHHHHh--hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHH
Q ss_pred ---HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 336 ---YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 336 ---~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
....| ..-+.++|+.|....| .|+..|...+.-=...|..+.+-.++....+ -+.|...
T Consensus 504 e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k---tl~~~~~ 565 (568)
T KOG2396|consen 504 EKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK---TLQGESA 565 (568)
T ss_pred HhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH---hhChhhh
No 449
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=2.3e+02 Score=28.06 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-P---FEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
+|.-=.+-|.+..++..|...|.+- . -.|| .+.|+.=..+-...||+..+..-..+++.++|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456678888999999888774 1 1233 34455444555667889999999999999999988888877777
Q ss_pred HhhcCCcHHHHHHHHHH
Q 006705 475 YASAGRWEDVTRVRELM 491 (634)
Q Consensus 475 ~~~~g~~~~A~~~~~~m 491 (634)
+....++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 77777766666554443
No 450
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.44 E-value=9.4e+02 Score=27.19 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=28.9
Q ss_pred HhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 236 AQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
.+.++++.|+..+.+|.+.|..|....-..++.+.-..|
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 356899999999999999998887665555555543333
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.25 E-value=2.5e+02 Score=24.78 Aligned_cols=57 Identities=14% Similarity=0.016 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
|++++..-. .++..+......-.|.++++.+.+. +...+..|-..-++.+.+.|-+.
T Consensus 21 GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~--~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 21 NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA--EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh--CCCCCcchHHHHHHHHHHCCCEE
Confidence 666665433 3444444445566778888888775 55556555555567778888764
No 452
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.89 E-value=1.2e+02 Score=22.35 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 006705 74 LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKC 106 (634)
Q Consensus 74 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 106 (634)
.+.|++++..+.... ..++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 455666666654332 45666777776666543
No 453
>PRK10941 hypothetical protein; Provisional
Probab=26.82 E-value=4.8e+02 Score=25.13 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
.|-..|.+.++++.|+++.+.+ .+.| |..-|.--.-.|.+.|....|..-++..++.-|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3445556666666666666655 2223 3334444445566666666666666666666666543
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.11 E-value=2.3e+02 Score=29.10 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
-.|++..+-.|++..|+++++.+.+.... .+. +.-+-...+|..++-+|.-.+++.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~-l~~-----------------------~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKG-LYT-----------------------KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccch-hhc-----------------------cCcchheehHHHHHHHHHHHHHHH
Confidence 34556666777777777777766432111 000 011113455556666666666666
Q ss_pred HHHHHHHHH
Q 006705 483 DVTRVRELM 491 (634)
Q Consensus 483 ~A~~~~~~m 491 (634)
+|.++|...
T Consensus 182 DAir~f~~i 190 (404)
T PF10255_consen 182 DAIRTFSQI 190 (404)
T ss_pred HHHHHHHHH
Confidence 666666654
No 455
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.07 E-value=88 Score=29.00 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 405 VVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
+..+..+.|+.+.|.+++.+. ..+.....|--+...--+.|+.+.|.+.+++.++++|++
T Consensus 1 ~a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 1 YAYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CcchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
No 456
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=26.02 E-value=3.1e+02 Score=21.07 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhH
Q 006705 77 GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFE 142 (634)
Q Consensus 77 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (634)
+..+++.+.+.|+- +. .-.=..-++....++|.++++.++.+...+|....+++-..|...-
T Consensus 16 v~~ild~L~~~gvl-t~---~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~L 77 (86)
T cd08323 16 TSYIMDHMISDGVL-TL---DEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDL 77 (86)
T ss_pred HHHHHHHHHhcCCC-CH---HHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHH
Confidence 44566666666621 11 1122222345567777777777777777777777777766554433
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.75 E-value=3.5e+02 Score=23.12 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=35.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.+.+. |++++..- ..++..+...+..-.|.++++.+.+. +...+..|-..-++.+...|-+.
T Consensus 11 ~lk~~-glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~--~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 11 RLKEA-GLRLTPQR-LAVLELLLEADGHLSAEELYEELREE--GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHc-CCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh--CCCCCHhHHHHHHHHHHHCCCEE
Confidence 33444 66655532 24455556565667777788777765 33444444444457777777654
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.25 E-value=4e+02 Score=22.12 Aligned_cols=43 Identities=7% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 278 HGKQVHSHVLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
.+.++|..|...|+... ...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666654433 44566666667777777777777653
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.88 E-value=4.8e+02 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHhccCcHHHHHHHHHHhhh
Q 006705 370 SGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~ 390 (634)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 346777777777777776653
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.69 E-value=5.2e+02 Score=27.59 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC--Chh---hHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPER--DVV---SCTAIISGYAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 254 (634)
..|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35788899999999999999888532 122 3344445555554445555555555443
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.20 E-value=1.1e+03 Score=26.93 Aligned_cols=218 Identities=16% Similarity=0.048 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHccC----CCCCh-------hhHHHHHHH-HHhcCChHHHHHHHHHHhhc----CCccChhhHHHHHHH
Q 006705 206 KAGRIHEARGVFECL----PERDV-------VSCTAIISG-YAQLGLDEEAIELFRKLQVE----GMISNYVTYASVLTA 269 (634)
Q Consensus 206 ~~g~~~~A~~~~~~m----~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~ 269 (634)
...++++|..+..+. +.++. ..|+++-.. ....|++++|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456777777776543 22221 245554332 23457778888877766543 122334455555666
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCchhH---HHHH--HHHHHhcCCH--HHHHHHHhhcCC-----C-----ChhhHHHH
Q 006705 270 LSGLAALGHGKQVHSHVLRFEIPSYVVL---QNSL--IDMYSKCGSL--TYSRRVFDNMSE-----R-----TVISWNAM 332 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~~--~~A~~~f~~m~~-----~-----~~~~~~~l 332 (634)
..-.|++++|..+.....+..-..++.. +..+ ...+...|.. ++....|..... . -+..+..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 6677888888877776665422222222 2222 1223445532 222333332221 1 12334444
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhhhccCCc--cCChHHHHHHHH
Q 006705 333 LVGYSKH-GMGREVVELFNLMREENKVKPDSVTY--LAVLSGCSHGGMEDRGLAVFHEIVDCKDGF--EPEIEHYGCVVD 407 (634)
Q Consensus 333 i~~~~~~-g~~~~A~~~~~~m~~~~g~~pd~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~p~~~~~~~li~ 407 (634)
..++.+. +...+|..-+..-... ...|-.... ..+.......|++++|...++++.....+- .++...-...+.
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444441 1111222222222111 111212222 245566677888888888888777542111 122222222232
Q ss_pred H--HHHcCCHHHHHHHHHh
Q 006705 408 M--LGRAGRVGEALEFIKN 424 (634)
Q Consensus 408 ~--~~~~g~~~~A~~~~~~ 424 (634)
. ....|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2346777776666555
No 462
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.09 E-value=9.9e+02 Score=26.30 Aligned_cols=186 Identities=13% Similarity=0.148 Sum_probs=91.4
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHH-hCCCCC--hhHHHHHHHHHH-cCCChHHHHHHHhhcCC---C-Ccc---
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIK-TCYRPP--VYLRTRLIVFYN-KCECLSDARKMFDEMRE---R-NVV--- 125 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~--~~~~~~li~~y~-~~g~~~~A~~~~~~~~~---~-~~~--- 125 (634)
+...|..+|. .|.+.++.+.+ ..++|. ..++-.+...|. ...+++.|+..+++... + +..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4455655554 34555666653 223332 234445555555 55778888888876532 2 111
Q ss_pred --hHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCChhhHHHH-HHHHhccCCcHHHHHHHHHHHHhC---CCCchH
Q 006705 126 --SWTAMISAYSQKAHSFEALNLFIRMLRS----DTEPNEFTFATV-LTSCAGAFGFELGKQIHSLIIKSN---FESHIY 195 (634)
Q Consensus 126 --~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~ 195 (634)
.-..++..|.+.+... |+...++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..+-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1224455666665555 88877776543 111222223322 222222367777777777665432 233344
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHccCC----C---------CChhhHHHHHH--HHHhcCChHHHHHHHHHHh
Q 006705 196 VGSSLLDMYA--KAGRIHEARGVFECLP----E---------RDVVSCTAIIS--GYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 196 ~~~~li~~y~--~~g~~~~A~~~~~~m~----~---------~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~ 252 (634)
++-.++.+.. +.+..+++.+..+++. . |-..+|..++. .+...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444443332 3344445555444331 0 12335555544 3445566666666555553
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.04 E-value=4.2e+02 Score=28.92 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=29.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCH
Q 006705 164 TVLTSCAGAFGFELGKQIHSLIIKSN--FESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~ 210 (634)
+++.+|...|++..+.++++...... -..-...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 67778888888888888877776543 111234456566666666654
No 464
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=1.2e+03 Score=27.04 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006705 75 RGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSD 154 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 154 (634)
..+..+=..+.+.-...|+..-..++..=...-.+++...++.+-.. |..|+..|...|..++|++++.+.....
T Consensus 460 ~~~~~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 460 DILELIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccc
Q ss_pred CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCHHHHHHHHcc--CCCCChhhHHH
Q 006705 155 TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE--SHIYVGSSLLDMYAKAGRIHEARGVFEC--LPERDVVSCTA 230 (634)
Q Consensus 155 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~--m~~~~~~~~~~ 230 (634)
- .......+.-..+.+.+.+.+-+ +-...|. .+.-..+.+.+.++|-. -.+.....-..
T Consensus 535 ~-------------~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~----~wvl~~~p~~gi~Ift~~~~~~~~sis~~~ 597 (877)
T KOG2063|consen 535 S-------------DTDSFQLDGLEKIIEYLKKLGAENLDLILEYA----DWVLNKNPEAGIQIFTSEDKQEAESISRDD 597 (877)
T ss_pred c-------------ccccchhhhHHHHHHHHHHhcccchhHHHHHh----hhhhccCchhheeeeeccChhhhccCCHHH
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG 309 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 309 (634)
++. |......+-+..+++.+....-.++..-.+.++.-|...-+ ......--++..+.+ +...+..+....
T Consensus 598 Vl~-~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~rekl~~~l~~s 669 (877)
T KOG2063|consen 598 VLN-YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-------VREKLLDFLESS 669 (877)
T ss_pred HHH-HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh-------HHHHHHHHhhhh
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 310 SLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 310 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+.=....+++........-..+++-+ +.|+.++|+.++-..... ++.|..+....-
T Consensus 670 ~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~d----------------------~~~A~~Yc~~~y 725 (877)
T KOG2063|consen 670 DLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHELDD----------------------IDAAESYCLPQY 725 (877)
T ss_pred cccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHhcc----------------------hhHHHHHHHHhc
Q ss_pred hccCCccCChHHHHHHHHHH
Q 006705 390 DCKDGFEPEIEHYGCVVDML 409 (634)
Q Consensus 390 ~~~~~~~p~~~~~~~li~~~ 409 (634)
+ ..+++...|-.++..|
T Consensus 726 ~---~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 726 E---SDKTNKEIYLTLLRIY 742 (877)
T ss_pred c---CCCcccHHHHHHHHHH
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.91 E-value=5.9e+02 Score=23.75 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH----HHHHcCCHHHHHHHHHh
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD----MLGRAGRVGEALEFIKN 424 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 424 (634)
+......|++++|.+..+.+... -+..|...+-.|.. -+.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe--iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE--ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH--HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445566666666655554432 23333322222211 13466667777777654
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.45 E-value=7.1e+02 Score=24.39 Aligned_cols=84 Identities=13% Similarity=-0.047 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHhhhccCC--ccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDG--FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
-.+.+.+.|+........ ...++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888763101 134566666777777788887766666666554567777888899988888888888888
Q ss_pred HHHhcc
Q 006705 455 QRLMEI 460 (634)
Q Consensus 455 ~~~~~~ 460 (634)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 888874
No 467
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.91 E-value=9.2e+02 Score=25.54 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=16.7
Q ss_pred hCCCCChhHHHHHHHHHHcCCChHHHHHHHhh
Q 006705 87 TCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118 (634)
Q Consensus 87 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 118 (634)
.|+.-+..+...++... .|++..|...++.
T Consensus 192 egi~i~~eal~~Ia~~s--~GdlR~aln~Le~ 221 (472)
T PRK14962 192 EGIEIDREALSFIAKRA--SGGLRDALTMLEQ 221 (472)
T ss_pred cCCCCCHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 35555555555544422 4677777766665
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.84 E-value=3.6e+02 Score=22.32 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHh-------ccCCCCCchHH----HHHHHHhhcCCcHHHHHHHHHH
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLM-------EIEPENAGNYV----ILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 491 (634)
|...+..|-.++...|+++++....+..+ +++.+....|. .-..++-..|+.++|.+-|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34556677789999999998876665554 45544333343 3455677889999999998864
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.80 E-value=7.4e+02 Score=24.38 Aligned_cols=42 Identities=10% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 145 NLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
++++.|...++.|.-++|..+.-.+.+.=.+.....+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555666666665555555555555555666665554
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.60 E-value=3.1e+02 Score=26.83 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006705 97 TRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152 (634)
Q Consensus 97 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 152 (634)
-.++..+.+.+.+......+..+ ..+..-...+..+...|++..|++++.+...
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34556666666666666555555 2344455667788889999999998887765
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.57 E-value=5.2e+02 Score=23.28 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhccCCccCC--hH-----HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPE--IE-----HYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~--~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
++.|+.+++.+.+.. . .|. .. .--..+-.|.+.|.+++|.+++++.-..|+......-+
T Consensus 85 LESAl~v~~~I~~E~-~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 85 LESALMVLESIEKEF-S-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 456677777776642 1 111 11 11233456778888888888888863355554444333
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.37 E-value=1.4e+02 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=9.8
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 006705 130 MISAYSQKAHSFEALNLFIRM 150 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m 150 (634)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 473
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=5.3e+02 Score=24.80 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=48.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+=+++...++++.|..+.++.+.++|.++....--+-+|.+.|...-|.+-+....+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3367788888999999999999999998877777888899999999998888776543
No 474
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.21 E-value=7.5e+02 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=12.5
Q ss_pred HHHHHHHHccC--CCCChhhHHHHHHH
Q 006705 210 IHEARGVFECL--PERDVVSCTAIISG 234 (634)
Q Consensus 210 ~~~A~~~~~~m--~~~~~~~~~~li~~ 234 (634)
++.+.++...+ .+.+...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 45555666555 23455566655543
No 475
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.09 E-value=8e+02 Score=24.54 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH-HHHHHHHhhcCCccChhhHHHHHHHHhcccchH
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA-IELFRKLQVEGMISNYVTYASVLTALSGLAALG 277 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 277 (634)
.+.+.++|.++.+.+..+-+.+..--.....++..++-...-.+.. ..+++.+... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 3566666666666555555544442233344455444333333332 3344444433 78888888888888777766
Q ss_pred HHHHHHHHHHHcC
Q 006705 278 HGKQVHSHVLRFE 290 (634)
Q Consensus 278 ~a~~i~~~~~~~~ 290 (634)
.....+..+.+..
T Consensus 248 ~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 248 LVAILIDALLQSP 260 (340)
T ss_pred HHHHHHHHHhcCc
Confidence 6666566666554
No 476
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.85 E-value=1.9e+02 Score=28.10 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 410 GRAGRVGEALEFIKNM-PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
-+.|+.++|..+|+.. ...|+ .....-+......+++.-+|.+++-+++.+.|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3566777777776643 22333 222223333334455566666666666666666543
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.82 E-value=2e+02 Score=23.19 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=26.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 006705 130 MISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFG 174 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 174 (634)
++..+...+..-.|-++++.+.+.+..++..|....|..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444555555556667777777666655566665555555555443
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.78 E-value=2.8e+02 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=8.5
Q ss_pred HHHHhCCChhHHHHHHH
Q 006705 132 SAYSQKAHSFEALNLFI 148 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~ 148 (634)
..|...|++.+|+.-|+
T Consensus 18 rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 44555555555554443
No 479
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.72 E-value=9.4e+02 Score=25.21 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=23.9
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhH--HHHHHHH-----HHcCCChHHHHHHHhh
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL--RTRLIVF-----YNKCECLSDARKMFDE 118 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----y~~~g~~~~A~~~~~~ 118 (634)
.+...++.++.+ +.+.+++.|..++... ....+.. ....|..+-+.-+++.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ 95 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC
Confidence 344444555543 4444455665554322 1223343 4455555555555554
No 480
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=1.3e+03 Score=26.78 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=12.0
Q ss_pred ccCCchHHHHHHHHHHHhC
Q 006705 70 NQRTLRGGQRVHAHMIKTC 88 (634)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~g 88 (634)
.+..+..++|+++.++...
T Consensus 861 ~RDvlp~G~Qi~~lllTy~ 879 (1304)
T KOG1114|consen 861 DRDVLPDGRQIYELLLTYN 879 (1304)
T ss_pred ccccCCChHHHHHHHHhee
Confidence 3334667777777776544
No 481
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.68 E-value=81 Score=22.52 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH
Q 006705 340 GMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
=+++.|+..|.++...+.++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 37889999999998874566654
No 482
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.39 E-value=9.2e+02 Score=24.97 Aligned_cols=192 Identities=14% Similarity=0.047 Sum_probs=116.0
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 006705 213 ARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIP 292 (634)
Q Consensus 213 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 292 (634)
...+.+.+..++.......+.++...+..+-. ..+..+.+. ++.......+.++...+. + ....+...++ .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~-~~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d 158 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE-PWLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---H 158 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-HHHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---C
Confidence 55556666666776777888888877765544 445555542 344455566677765442 2 2233333333 5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
++..+-..-+.++++.+..+..-.+-.-....|...-..-+.+....|. .+|...+...... |+..+...+....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~l 233 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLL 233 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHH
Confidence 6677777777888877776544444444556777777777888888887 6777776664333 2222323333333
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP 426 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 426 (634)
...|. +++...+....+. ..+-...+.++++.|+..-+--++..|.
T Consensus 234 al~~~-~~a~~~L~~ll~d-------~~vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 234 AVAGG-PDAQAWLRELLQA-------AATRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HhCCc-hhHHHHHHHHhcC-------hhhHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 33233 3666666666542 2255667788888888888777777775
No 483
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=21.33 E-value=4.7e+02 Score=27.69 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--------CCchHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE--------NAGNYV 469 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~ 469 (634)
++..|-.++.-|...+++++|.++-+-.+ +...|.+|......+.+...++.++..+.+++.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 44457777778888999999999888764 5678888888777888877777666655544321 001112
Q ss_pred HHHHHHhhcCCcHHHHHHHHH
Q 006705 470 ILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~ 490 (634)
-++....-.|+..||.-++..
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHhccchhhhHHHHh
Confidence 233344445777777766543
No 484
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.29 E-value=9e+02 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhcCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006705 95 LRTRLIVFYNKCECLSDARKMFDEMRE------RNVVSWTAMISAYSQKAHSFEALNLFIRMLR 152 (634)
Q Consensus 95 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 152 (634)
.+.-+-+.|..||+++.|.+.+.+... ..+..|-.+|..-.-.|++......-.+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677788888999999888887543 1233455666666666777666666555543
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.84 E-value=2.1e+02 Score=29.59 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 432 AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 432 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
.+..+-++.+.+++|+..|..+.++++++.|+.. ..+.|.+++....
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e 347 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACE 347 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHh
Confidence 4566777888899999999999999999988631 2246777776553
No 486
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=20.68 E-value=6.9e+02 Score=23.24 Aligned_cols=62 Identities=18% Similarity=0.061 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHccCCCCChh-hHHHHHHH--HHhcCChHHHHHHHHHHhhc
Q 006705 193 HIYVGSSLLDMYAKAGRIHEARGVFECLPERDVV-SCTAIISG--YAQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 193 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 254 (634)
-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+-++ +---|+++-|.+-|.+.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3567777777777788888888888877664432 22222111 22356777777666655544
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.53 E-value=2.3e+02 Score=22.81 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=22.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 333 LVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
+..+...+..-.|.++++.+.+. +..++..|....|..+...|.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCC
Confidence 33344444444555666666555 444555555555555554443
No 488
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.51 E-value=4.5e+02 Score=20.98 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=9.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 006705 231 IISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m 251 (634)
++.-|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 333444444444444444444
No 489
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=20.51 E-value=2.2e+02 Score=17.52 Aligned_cols=15 Identities=7% Similarity=0.386 Sum_probs=6.0
Q ss_pred HHHhhcCCcHHHHHH
Q 006705 473 NLYASAGRWEDVTRV 487 (634)
Q Consensus 473 ~~~~~~g~~~~A~~~ 487 (634)
-.+...|++++|.++
T Consensus 9 ~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 9 YNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 333444444444444
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.10 E-value=4.3e+02 Score=25.02 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m 352 (634)
|..-|.+.|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555666666555555
No 491
>PF15161 Neuropep_like: Neuropeptide-like
Probab=20.10 E-value=50 Score=22.45 Aligned_cols=18 Identities=44% Similarity=1.041 Sum_probs=12.7
Q ss_pred ccccCccchhhhHHHhhhc
Q 006705 590 NLRICVDCHNFAKFVSKVY 608 (634)
Q Consensus 590 ~l~~~~~~~~~~~~~s~~~ 608 (634)
.-|-|.|||.+. |+.+..
T Consensus 12 esRPCVDCHAFe-fmqRAL 29 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQRAL 29 (65)
T ss_pred CCCCchhhHHHH-HHHHHH
Confidence 357899999775 665544
No 492
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.04 E-value=43 Score=34.28 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=78.4
Q ss_pred cCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHH--HHHHHHcCCChHHHHHHHhhcCC--CCc---
Q 006705 52 LGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTR--LIVFYNKCECLSDARKMFDEMRE--RNV--- 124 (634)
Q Consensus 52 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~~~g~~~~A~~~~~~~~~--~~~--- 124 (634)
.|+.||.++|.+=..+--+.-....|+..++.++ ||...-.. -=..-...|.-..-+++|+.+.- |++
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 3566777776655544444445566666666553 44332222 00011122344556778887653 222
Q ss_pred -------chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCchHH
Q 006705 125 -------VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT-VLTSCAGAFGFELGKQIHSLIIKSNFESHIYV 196 (634)
Q Consensus 125 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 196 (634)
..|+.|..++.++-.+.+ +.+=.+|...|-.-+.++... =...-+...+...+.++-.+.+-.-+.|...+
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~t 562 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLT 562 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhh
Confidence 247788887777655532 122233333332222222210 00011223455677777766655557888899
Q ss_pred HHHHHHHHHhc
Q 006705 197 GSSLLDMYAKA 207 (634)
Q Consensus 197 ~~~li~~y~~~ 207 (634)
|.+|+.+|++.
T Consensus 563 wGSlLriYGr~ 573 (650)
T KOG4334|consen 563 WGSLLRIYGRL 573 (650)
T ss_pred HHHHHHHhhhh
Confidence 99999999876
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.04 E-value=2.8e+02 Score=19.67 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=15.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLT 167 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 167 (634)
...|++-+|-++++++-.....|....+..+|.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 345666666666666643322233334444444
Done!