Query 006705
Match_columns 634
No_of_seqs 801 out of 4463
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.2E-39 1.8E-43 351.0 40.4 430 55-494 81-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-37 4.7E-42 339.7 33.9 440 26-477 84-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.4E-33 257.8 18.6 209 44-274 11-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.5E-28 1.9E-32 253.7 21.4 184 226-412 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.1E-30 230.0 38.8 371 65-480 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-24 3.5E-29 224.3 39.9 353 131-494 6-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 3E-22 1E-26 213.7 31.9 426 59-494 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.1E-26 205.5 34.1 335 123-490 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.7E-21 1.6E-25 204.5 30.5 428 35-471 15-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.2E-20 4.1E-25 202.7 32.7 422 58-494 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.1E-20 1.1E-24 194.7 33.7 344 92-464 25-414 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.2E-18 4.1E-23 187.0 30.1 420 35-468 34-499 (537)
13 1b89_A Protein (clathrin heavy 99.8 2E-19 6.8E-24 180.0 19.1 321 105-462 15-343 (449)
14 3ieg_A DNAJ homolog subfamily 99.8 1.9E-17 6.3E-22 167.4 31.2 323 123-477 2-352 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 3.6E-17 1.2E-21 165.3 32.5 305 159-494 3-335 (359)
16 3hym_B Cell division cycle pro 99.8 3.2E-17 1.1E-21 163.7 27.2 286 192-481 20-321 (330)
17 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.1E-20 161.5 39.9 210 278-494 256-492 (530)
18 2xm6_A Protein corresponding t 99.8 3.9E-15 1.4E-19 157.6 38.9 365 92-477 38-452 (490)
19 3hym_B Cell division cycle pro 99.8 2.9E-16 1E-20 156.7 28.0 265 223-494 20-299 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.4E-15 8.1E-20 161.0 36.6 399 57-463 12-495 (530)
21 1fch_A Peroxisomal targeting s 99.7 1.1E-16 3.6E-21 162.8 22.8 280 206-490 37-355 (368)
22 1fch_A Peroxisomal targeting s 99.7 1.7E-16 5.7E-21 161.4 24.0 257 162-423 67-354 (368)
23 4eqf_A PEX5-related protein; a 99.7 1.9E-16 6.7E-21 160.8 21.1 262 224-490 64-352 (365)
24 2xm6_A Protein corresponding t 99.7 4.5E-14 1.5E-18 149.5 39.5 353 121-496 36-434 (490)
25 4eqf_A PEX5-related protein; a 99.7 3.2E-16 1.1E-20 159.2 20.8 259 161-424 67-352 (365)
26 1xi4_A Clathrin heavy chain; a 99.7 7.2E-14 2.4E-18 155.4 40.1 380 59-486 986-1376(1630)
27 3mkr_A Coatomer subunit epsilo 99.7 6.8E-15 2.3E-19 143.9 28.9 267 204-486 9-286 (291)
28 4g1t_A Interferon-induced prot 99.7 5.1E-15 1.7E-19 156.0 29.9 217 275-505 228-470 (472)
29 1b89_A Protein (clathrin heavy 99.7 1.3E-15 4.4E-20 152.5 23.5 219 5-253 17-235 (449)
30 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.8E-20 150.9 21.9 258 227-491 23-312 (327)
31 1xi4_A Clathrin heavy chain; a 99.7 7.6E-13 2.6E-17 147.3 43.7 379 57-489 952-1340(1630)
32 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-17 1.2E-21 176.3 8.5 130 92-221 126-263 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-17 1.3E-21 176.0 8.3 132 291-425 123-262 (1134)
34 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.1E-19 144.7 25.5 264 124-425 21-312 (327)
35 3mkr_A Coatomer subunit epsilo 99.6 1.7E-13 5.9E-18 133.9 28.9 243 103-355 9-264 (291)
36 4g1t_A Interferon-induced prot 99.6 1.5E-13 5.1E-18 144.7 29.9 381 56-471 49-470 (472)
37 3uq3_A Heat shock protein STI1 99.5 3.3E-13 1.1E-17 129.1 20.7 225 226-494 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.5 1.9E-13 6.5E-18 130.8 18.4 217 194-424 5-232 (258)
39 2pl2_A Hypothetical conserved 99.5 2.5E-13 8.7E-18 126.6 18.5 196 292-492 2-212 (217)
40 3e4b_A ALGK; tetratricopeptide 99.5 2.9E-12 9.9E-17 133.6 24.7 214 64-287 9-244 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.5E-13 2.6E-17 128.1 19.0 241 237-488 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.5 1.9E-12 6.4E-17 125.2 21.2 239 199-477 8-267 (272)
43 2ho1_A Type 4 fimbrial biogene 99.5 6.3E-12 2.2E-16 119.9 21.7 196 295-494 37-238 (252)
44 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-12 7.8E-17 122.1 17.6 170 300-474 62-236 (243)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.2E-12 1.8E-16 122.1 20.0 239 136-385 17-269 (275)
46 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.7E-16 115.7 21.3 197 294-494 7-211 (225)
47 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4.1E-14 118.0 39.6 423 44-475 53-584 (679)
48 2pl2_A Hypothetical conserved 99.4 6.2E-12 2.1E-16 117.1 19.0 193 123-320 4-210 (217)
49 2ho1_A Type 4 fimbrial biogene 99.4 1.7E-11 5.8E-16 116.9 22.6 205 225-466 37-244 (252)
50 3u4t_A TPR repeat-containing p 99.4 2E-11 6.8E-16 117.9 23.0 229 159-391 3-250 (272)
51 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-12 1.1E-16 121.0 16.8 197 293-494 21-222 (243)
52 1ouv_A Conserved hypothetical 99.4 5.9E-11 2E-15 114.8 25.5 225 224-463 5-254 (273)
53 2vq2_A PILW, putative fimbrial 99.4 2.5E-11 8.6E-16 113.2 21.9 209 224-469 7-220 (225)
54 3e4b_A ALGK; tetratricopeptide 99.4 1.9E-11 6.5E-16 127.4 22.9 186 297-496 178-389 (452)
55 2h6f_A Protein farnesyltransfe 99.4 1.7E-11 5.9E-16 123.9 21.7 246 225-477 97-365 (382)
56 1ouv_A Conserved hypothetical 99.4 8E-11 2.8E-15 113.8 25.7 224 259-496 5-253 (273)
57 2h6f_A Protein farnesyltransfe 99.4 2.4E-11 8.2E-16 122.9 20.0 227 261-494 98-348 (382)
58 4a1s_A PINS, partner of inscut 99.3 1E-11 3.5E-16 128.0 15.6 265 197-493 51-371 (411)
59 3vtx_A MAMA; tetratricopeptide 99.3 6.7E-11 2.3E-15 106.8 19.0 165 325-494 4-170 (184)
60 3sf4_A G-protein-signaling mod 99.3 2.3E-11 7.9E-16 124.8 18.0 196 297-493 89-335 (406)
61 3ro2_A PINS homolog, G-protein 99.3 3.8E-11 1.3E-15 119.4 18.0 198 296-494 84-332 (338)
62 4a1s_A PINS, partner of inscut 99.3 4.6E-11 1.6E-15 123.0 18.5 99 364-462 265-374 (411)
63 3sf4_A G-protein-signaling mod 99.3 9.4E-11 3.2E-15 120.2 20.6 118 364-481 229-363 (406)
64 4e6h_A MRNA 3'-END-processing 99.3 6.9E-09 2.4E-13 112.0 35.7 417 74-495 48-571 (679)
65 4abn_A Tetratricopeptide repea 99.3 1.2E-11 3.9E-16 129.9 13.8 209 276-491 84-318 (474)
66 3ro2_A PINS homolog, G-protein 99.3 5.5E-11 1.9E-15 118.2 18.0 58 127-186 8-70 (338)
67 2ond_A Cleavage stimulation fa 99.3 6E-10 2.1E-14 109.8 24.5 218 242-465 33-275 (308)
68 3vtx_A MAMA; tetratricopeptide 99.3 7.4E-11 2.5E-15 106.5 14.9 168 293-465 3-175 (184)
69 3nf1_A KLC 1, kinesin light ch 99.2 4.5E-11 1.5E-15 117.7 12.8 237 226-493 28-306 (311)
70 3ulq_A Response regulator aspa 99.2 1.2E-09 4.1E-14 111.3 22.3 233 200-461 109-369 (383)
71 3as5_A MAMA; tetratricopeptide 99.2 4.6E-10 1.6E-14 100.9 16.2 157 332-493 14-172 (186)
72 2ond_A Cleavage stimulation fa 99.2 3E-09 1E-13 104.8 23.2 84 308-391 182-270 (308)
73 3ulq_A Response regulator aspa 99.2 6.1E-10 2.1E-14 113.5 18.5 285 68-352 22-365 (383)
74 4gyw_A UDP-N-acetylglucosamine 99.2 4.8E-10 1.6E-14 122.5 18.2 160 326-492 9-172 (723)
75 3as5_A MAMA; tetratricopeptide 99.1 1.9E-09 6.4E-14 96.8 18.1 168 295-467 8-180 (186)
76 3nf1_A KLC 1, kinesin light ch 99.1 1.8E-10 6.1E-15 113.3 11.6 163 126-288 29-223 (311)
77 4abn_A Tetratricopeptide repea 99.1 1.4E-09 4.9E-14 113.9 18.3 211 140-390 84-320 (474)
78 1hz4_A MALT regulatory protein 99.1 2.7E-08 9.2E-13 100.8 26.7 194 299-493 97-321 (373)
79 3q15_A PSP28, response regulat 99.1 3.7E-09 1.3E-13 107.5 20.1 222 271-493 112-364 (378)
80 1hz4_A MALT regulatory protein 99.1 5.2E-08 1.8E-12 98.6 27.7 258 132-389 22-320 (373)
81 4i17_A Hypothetical protein; T 99.1 3.8E-09 1.3E-13 98.9 17.6 205 258-475 5-224 (228)
82 4i17_A Hypothetical protein; T 99.0 4.8E-09 1.7E-13 98.1 16.6 189 293-494 5-209 (228)
83 3q15_A PSP28, response regulat 99.0 4.3E-08 1.5E-12 99.6 23.7 121 200-320 107-247 (378)
84 3edt_B KLC 2, kinesin light ch 99.0 2.5E-09 8.4E-14 103.3 11.8 198 296-493 44-280 (283)
85 1qqe_A Vesicular transport pro 98.9 9.7E-09 3.3E-13 100.2 14.5 187 305-491 47-266 (292)
86 3qky_A Outer membrane assembly 98.9 5.5E-08 1.9E-12 93.0 19.0 183 294-494 14-224 (261)
87 4gyw_A UDP-N-acetylglucosamine 98.9 1.3E-08 4.6E-13 111.1 16.2 164 293-462 7-176 (723)
88 1qqe_A Vesicular transport pro 98.9 3.6E-08 1.2E-12 96.2 16.6 243 177-463 3-272 (292)
89 3edt_B KLC 2, kinesin light ch 98.9 4.1E-08 1.4E-12 94.6 16.1 63 125-187 44-113 (283)
90 3mv2_B Coatomer subunit epsilo 98.9 2.8E-07 9.5E-12 88.5 20.9 159 328-493 102-281 (310)
91 2fo7_A Synthetic consensus TPR 98.8 5.8E-08 2E-12 81.6 13.5 129 328-493 3-131 (136)
92 2fo7_A Synthetic consensus TPR 98.8 8.7E-08 3E-12 80.5 14.6 124 297-425 3-129 (136)
93 2uy1_A Cleavage stimulation fa 98.8 7.6E-06 2.6E-10 85.6 31.9 199 242-456 196-409 (493)
94 3qky_A Outer membrane assembly 98.8 8.9E-08 3E-12 91.6 15.0 199 259-481 14-248 (261)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 7.9E-12 86.5 17.5 184 295-496 4-215 (225)
96 3mv2_B Coatomer subunit epsilo 98.8 7.4E-07 2.5E-11 85.5 20.9 178 279-466 85-288 (310)
97 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.6E-13 88.8 7.5 140 335-480 6-149 (150)
98 2pzi_A Probable serine/threoni 98.8 3E-08 1E-12 108.8 12.5 169 306-480 402-583 (681)
99 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.6E-12 91.8 15.7 174 313-492 104-282 (287)
100 2r5s_A Uncharacterized protein 98.7 1.8E-07 6.3E-12 83.3 12.7 63 430-492 107-171 (176)
101 2pzi_A Probable serine/threoni 98.7 8.1E-07 2.8E-11 97.4 19.7 189 271-466 402-608 (681)
102 3rjv_A Putative SEL1 repeat pr 98.7 1E-06 3.5E-11 81.1 17.4 161 325-496 17-199 (212)
103 2vsy_A XCC0866; transferase, g 98.6 2.4E-07 8.2E-12 99.6 14.5 160 308-472 2-169 (568)
104 2ifu_A Gamma-SNAP; membrane fu 98.6 9E-07 3.1E-11 86.8 16.7 223 237-487 3-254 (307)
105 2vsy_A XCC0866; transferase, g 98.6 5.7E-07 1.9E-11 96.7 16.1 147 273-425 2-154 (568)
106 3qou_A Protein YBBN; thioredox 98.6 1.9E-06 6.6E-11 83.5 18.4 161 260-424 117-280 (287)
107 3dra_A Protein farnesyltransfe 98.6 8.4E-06 2.9E-10 78.9 22.6 149 340-493 124-286 (306)
108 3urz_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 79.6 16.4 183 230-439 9-198 (208)
109 3u3w_A Transcriptional activat 98.6 2.7E-06 9.1E-11 82.8 18.4 161 331-492 80-264 (293)
110 2r5s_A Uncharacterized protein 98.6 9.8E-07 3.3E-11 78.5 14.0 153 197-353 9-171 (176)
111 4ga2_A E3 SUMO-protein ligase 98.6 1.1E-07 3.8E-12 82.2 7.5 122 368-493 3-128 (150)
112 3gyz_A Chaperone protein IPGC; 98.5 4E-07 1.4E-11 78.5 10.5 100 395-494 31-133 (151)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 1.1E-06 3.7E-11 86.2 15.0 126 263-389 79-222 (307)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3E-06 1E-10 77.8 17.2 92 298-391 9-100 (213)
115 3urz_A Uncharacterized protein 98.5 2.8E-06 9.7E-11 77.9 16.6 137 330-473 58-198 (208)
116 2vgx_A Chaperone SYCD; alterna 98.5 3.9E-07 1.3E-11 78.5 9.6 97 398-494 20-118 (148)
117 2uy1_A Cleavage stimulation fa 98.5 1.2E-05 3.9E-10 84.2 22.2 373 71-493 7-412 (493)
118 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.4E-06 8.2E-11 79.5 15.4 185 260-467 4-220 (225)
119 3dra_A Protein farnesyltransfe 98.5 6.8E-05 2.3E-09 72.5 25.2 228 238-473 46-301 (306)
120 4gco_A Protein STI-1; structur 98.5 1.1E-06 3.9E-11 73.2 11.0 107 364-473 15-123 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.9E-06 1E-10 77.9 14.3 123 366-494 10-150 (213)
122 2qfc_A PLCR protein; TPR, HTH, 98.4 4.4E-06 1.5E-10 81.2 15.9 165 327-492 76-264 (293)
123 2c2l_A CHIP, carboxy terminus 98.4 5.8E-07 2E-11 86.9 9.0 188 295-494 4-199 (281)
124 4gco_A Protein STI-1; structur 98.4 1.6E-06 5.5E-11 72.2 10.6 100 395-494 8-110 (126)
125 3rjv_A Putative SEL1 repeat pr 98.4 1.1E-05 3.7E-10 74.2 17.2 159 123-290 17-198 (212)
126 1na0_A Designed protein CTPR3; 98.4 2.5E-06 8.6E-11 70.2 11.6 113 363-478 10-124 (125)
127 2xcb_A PCRH, regulatory protei 98.4 3E-06 1E-10 72.3 12.2 97 398-494 17-115 (142)
128 1a17_A Serine/threonine protei 98.4 3.4E-06 1.2E-10 73.7 12.5 125 365-492 16-144 (166)
129 2vyi_A SGTA protein; chaperone 98.3 3.6E-06 1.2E-10 69.9 11.4 116 363-481 13-130 (131)
130 2lni_A Stress-induced-phosphop 98.3 3.4E-06 1.2E-10 70.5 11.0 113 364-479 18-132 (133)
131 3u3w_A Transcriptional activat 98.3 4E-05 1.4E-09 74.4 19.8 94 297-390 157-265 (293)
132 1p5q_A FKBP52, FK506-binding p 98.3 2.2E-06 7.5E-11 85.1 10.5 144 325-492 146-292 (336)
133 2e2e_A Formate-dependent nitri 98.3 2.1E-06 7.2E-11 76.3 9.2 119 373-494 21-144 (177)
134 4f3v_A ESX-1 secretion system 98.3 2.2E-06 7.5E-11 81.1 9.1 133 332-471 108-247 (282)
135 3upv_A Heat shock protein STI1 98.2 4.8E-06 1.7E-10 69.1 9.9 96 399-494 4-101 (126)
136 4f3v_A ESX-1 secretion system 98.2 5.1E-05 1.8E-09 71.7 17.8 137 297-437 104-247 (282)
137 2fbn_A 70 kDa peptidylprolyl i 98.2 7.2E-07 2.4E-11 81.2 4.8 172 300-494 9-186 (198)
138 2kck_A TPR repeat; tetratricop 98.2 5.7E-06 1.9E-10 66.6 9.4 97 399-495 6-107 (112)
139 2e2e_A Formate-dependent nitri 98.2 1.1E-05 3.9E-10 71.5 11.8 126 337-467 21-151 (177)
140 3gw4_A Uncharacterized protein 98.2 9.1E-06 3.1E-10 73.7 11.2 46 207-252 5-53 (203)
141 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.1E-10 67.7 10.9 98 397-494 7-106 (137)
142 1na0_A Designed protein CTPR3; 98.2 4.3E-05 1.5E-09 62.6 14.0 94 327-425 10-103 (125)
143 3gw4_A Uncharacterized protein 98.2 8.3E-06 2.9E-10 74.0 10.3 148 105-252 4-174 (203)
144 1hxi_A PEX5, peroxisome target 98.1 5.7E-06 2E-10 68.3 8.1 94 401-494 19-114 (121)
145 3q7a_A Farnesyltransferase alp 98.1 0.00019 6.5E-09 70.2 20.1 243 228-494 57-331 (349)
146 1a17_A Serine/threonine protei 98.1 3.1E-05 1E-09 67.4 13.4 87 301-389 19-108 (166)
147 2qfc_A PLCR protein; TPR, HTH, 98.1 5.5E-05 1.9E-09 73.3 16.4 124 301-424 121-262 (293)
148 3sz7_A HSC70 cochaperone (SGT) 98.1 9.3E-06 3.2E-10 71.1 9.8 97 398-494 10-108 (164)
149 2c2l_A CHIP, carboxy terminus 98.1 1.8E-05 6.3E-10 76.2 12.7 95 159-254 4-101 (281)
150 1elw_A TPR1-domain of HOP; HOP 98.1 2.9E-05 9.9E-10 62.9 12.2 100 368-470 10-111 (118)
151 3gyz_A Chaperone protein IPGC; 98.1 1.8E-05 6E-10 68.1 11.2 95 326-425 36-130 (151)
152 2lni_A Stress-induced-phosphop 98.1 1.5E-05 5E-10 66.5 10.4 99 396-494 13-113 (133)
153 1elw_A TPR1-domain of HOP; HOP 98.1 1.6E-05 5.5E-10 64.5 10.3 97 398-494 3-101 (118)
154 2vyi_A SGTA protein; chaperone 98.1 5E-05 1.7E-09 62.7 13.5 115 327-446 13-129 (131)
155 2dba_A Smooth muscle cell asso 98.1 4.5E-05 1.5E-09 64.9 13.1 107 364-474 30-142 (148)
156 2vgx_A Chaperone SYCD; alterna 98.1 5E-06 1.7E-10 71.5 6.9 102 363-467 22-125 (148)
157 3q7a_A Farnesyltransferase alp 98.1 0.0019 6.5E-08 63.1 25.1 177 197-377 57-257 (349)
158 2dba_A Smooth muscle cell asso 98.0 3.1E-05 1E-09 65.9 10.9 98 397-494 26-128 (148)
159 4gcn_A Protein STI-1; structur 98.0 2.1E-05 7.1E-10 65.5 9.0 95 399-493 8-111 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.0 4.6E-05 1.6E-09 66.6 11.2 106 362-470 11-118 (164)
161 2xcb_A PCRH, regulatory protei 98.0 2.5E-05 8.6E-10 66.4 9.2 101 365-468 21-123 (142)
162 3upv_A Heat shock protein STI1 98.0 3.7E-05 1.3E-09 63.6 10.1 92 328-424 6-97 (126)
163 1wao_1 Serine/threonine protei 97.9 8.8E-05 3E-09 77.3 14.4 115 304-423 15-134 (477)
164 2kck_A TPR repeat; tetratricop 97.9 8.5E-05 2.9E-09 59.4 11.2 98 364-464 8-110 (112)
165 2hr2_A Hypothetical protein; a 97.9 2.9E-05 1E-09 66.2 8.2 93 402-494 14-131 (159)
166 1p5q_A FKBP52, FK506-binding p 97.9 8.3E-05 2.8E-09 73.7 12.7 126 295-425 147-291 (336)
167 3dss_A Geranylgeranyl transfer 97.9 0.0013 4.5E-08 63.9 20.8 164 325-493 107-303 (331)
168 4gcn_A Protein STI-1; structur 97.9 7.1E-05 2.4E-09 62.2 10.3 95 328-424 10-108 (127)
169 2fbn_A 70 kDa peptidylprolyl i 97.9 2E-05 6.8E-10 71.4 7.4 153 267-425 11-183 (198)
170 3dss_A Geranylgeranyl transfer 97.9 0.0018 6.1E-08 63.0 21.5 190 276-472 90-316 (331)
171 1elr_A TPR2A-domain of HOP; HO 97.9 8.6E-05 2.9E-09 61.3 10.7 96 328-425 6-105 (131)
172 3q49_B STIP1 homology and U bo 97.9 6.3E-05 2.2E-09 63.1 9.7 95 325-424 8-102 (137)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.7E-05 2.3E-09 77.8 11.7 143 326-492 268-413 (457)
174 4b4t_Q 26S proteasome regulato 97.9 9.9E-05 3.4E-09 75.9 13.0 166 328-493 57-244 (434)
175 1wao_1 Serine/threonine protei 97.9 3E-05 1E-09 80.9 8.9 114 373-489 17-134 (477)
176 1elr_A TPR2A-domain of HOP; HO 97.8 4.8E-05 1.6E-09 62.9 8.2 96 399-494 4-108 (131)
177 2xev_A YBGF; tetratricopeptide 97.8 5.5E-05 1.9E-09 62.7 8.1 90 405-494 8-105 (129)
178 3rkv_A Putative peptidylprolyl 97.8 5.5E-05 1.9E-09 65.9 8.2 64 431-494 63-126 (162)
179 3k9i_A BH0479 protein; putativ 97.8 1.5E-05 5.1E-10 65.2 3.8 81 413-493 4-89 (117)
180 2if4_A ATFKBP42; FKBP-like, al 97.7 6.3E-05 2.1E-09 74.6 8.6 147 326-494 179-328 (338)
181 3ro3_A PINS homolog, G-protein 97.7 0.0001 3.4E-09 63.5 9.0 93 401-493 51-157 (164)
182 1ihg_A Cyclophilin 40; ppiase 97.7 0.00016 5.4E-09 72.5 11.1 137 327-486 224-362 (370)
183 1hxi_A PEX5, peroxisome target 97.7 0.00016 5.6E-09 59.3 9.3 93 369-464 24-118 (121)
184 4b4t_Q 26S proteasome regulato 97.7 0.00058 2E-08 70.0 15.6 121 305-425 105-242 (434)
185 2xev_A YBGF; tetratricopeptide 97.7 0.00031 1.1E-08 58.0 11.0 88 331-424 7-101 (129)
186 3k9i_A BH0479 protein; putativ 97.6 5.7E-05 1.9E-09 61.6 5.6 89 376-466 4-96 (117)
187 1dce_A Protein (RAB geranylger 97.6 0.002 6.7E-08 68.4 18.7 168 311-483 45-244 (567)
188 2hr2_A Hypothetical protein; a 97.6 0.00015 5.2E-09 61.8 7.3 69 401-469 59-140 (159)
189 3ro3_A PINS homolog, G-protein 97.6 0.00026 8.8E-09 60.8 9.0 97 364-460 51-158 (164)
190 3n71_A Histone lysine methyltr 97.6 0.00026 9E-09 73.3 10.3 124 372-495 319-465 (490)
191 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00025 8.4E-09 70.3 9.8 150 295-465 179-333 (338)
192 2l6j_A TPR repeat-containing p 97.5 0.00014 4.7E-09 58.3 6.4 92 398-489 3-102 (111)
193 3rkv_A Putative peptidylprolyl 97.5 0.00022 7.4E-09 62.0 8.0 68 398-465 62-131 (162)
194 1na3_A Designed protein CTPR2; 97.5 0.00038 1.3E-08 53.2 7.8 81 399-479 9-91 (91)
195 3ma5_A Tetratricopeptide repea 97.4 0.0004 1.4E-08 54.6 7.9 66 429-494 5-70 (100)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0012 4.1E-08 68.3 13.5 126 295-425 268-412 (457)
197 2l6j_A TPR repeat-containing p 97.3 0.00027 9.3E-09 56.5 5.8 94 326-425 4-104 (111)
198 2kat_A Uncharacterized protein 97.3 0.00042 1.4E-08 56.0 6.5 76 418-493 4-81 (115)
199 1ihg_A Cyclophilin 40; ppiase 97.3 0.0012 4.2E-08 66.0 11.1 91 325-420 272-362 (370)
200 1zu2_A Mitochondrial import re 97.2 0.00027 9.3E-09 60.1 4.0 84 411-494 14-120 (158)
201 3n71_A Histone lysine methyltr 97.1 0.0023 7.8E-08 66.3 11.2 64 327-390 394-463 (490)
202 3bee_A Putative YFRE protein; 97.1 0.0024 8.3E-08 49.2 8.6 69 428-496 3-74 (93)
203 1klx_A Cysteine rich protein B 96.9 0.0059 2E-07 51.1 10.3 75 340-425 9-87 (138)
204 1dce_A Protein (RAB geranylger 96.9 0.011 3.6E-07 62.8 14.4 150 339-494 42-221 (567)
205 3qwp_A SET and MYND domain-con 96.8 0.0015 5.2E-08 66.5 6.9 89 433-539 331-427 (429)
206 1wy6_A Hypothetical protein ST 96.8 0.075 2.6E-06 42.8 14.8 141 336-497 17-157 (172)
207 1klx_A Cysteine rich protein B 96.7 0.023 7.7E-07 47.5 12.4 112 376-496 9-128 (138)
208 1na3_A Designed protein CTPR2; 96.7 0.013 4.6E-07 44.2 10.0 79 327-410 10-88 (91)
209 2kat_A Uncharacterized protein 96.7 0.0047 1.6E-07 49.7 7.6 65 398-462 18-84 (115)
210 3ma5_A Tetratricopeptide repea 96.7 0.0077 2.6E-07 47.0 8.5 64 325-390 6-69 (100)
211 1zu2_A Mitochondrial import re 96.5 0.0024 8.1E-08 54.3 4.7 49 417-465 64-125 (158)
212 3mkq_A Coatomer beta'-subunit; 96.5 0.21 7.3E-06 55.4 22.0 167 132-351 607-774 (814)
213 3ly7_A Transcriptional activat 96.4 0.062 2.1E-06 52.5 14.8 137 323-463 191-342 (372)
214 3lvg_A Clathrin heavy chain 1; 96.4 0.00094 3.2E-08 66.5 1.9 238 92-347 53-325 (624)
215 3qww_A SET and MYND domain-con 96.3 0.0034 1.2E-07 63.9 5.4 61 433-493 342-410 (433)
216 3mkq_A Coatomer beta'-subunit; 96.2 0.17 5.7E-06 56.3 19.3 46 305-352 662-707 (814)
217 3qwp_A SET and MYND domain-con 96.2 0.032 1.1E-06 56.7 12.0 95 372-466 297-411 (429)
218 3qww_A SET and MYND domain-con 96.1 0.022 7.5E-07 57.9 10.2 85 375-459 311-410 (433)
219 2kc7_A BFR218_protein; tetratr 96.1 0.02 6.7E-07 44.3 7.7 64 405-468 6-72 (99)
220 3lvg_A Clathrin heavy chain 1; 96.0 0.01 3.5E-07 59.2 6.7 400 26-487 83-534 (624)
221 2kc7_A BFR218_protein; tetratr 95.7 0.015 5.2E-07 44.9 5.7 58 437-494 6-64 (99)
222 3ly7_A Transcriptional activat 95.4 0.28 9.6E-06 47.9 14.1 62 325-389 276-337 (372)
223 3mkq_B Coatomer subunit alpha; 95.0 1.3 4.3E-05 38.1 15.6 102 203-321 14-115 (177)
224 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.9E-05 38.4 14.6 129 101-251 13-141 (177)
225 3u64_A Protein TP_0956; tetrat 94.8 0.088 3E-06 49.3 8.2 85 416-500 180-275 (301)
226 1pc2_A Mitochondria fission pr 94.4 0.2 6.9E-06 42.0 8.8 65 429-493 30-99 (152)
227 1pc2_A Mitochondria fission pr 94.1 0.11 3.8E-06 43.5 6.7 70 397-466 30-106 (152)
228 3bee_A Putative YFRE protein; 94.1 0.34 1.2E-05 36.9 9.0 67 397-463 4-75 (93)
229 2v5f_A Prolyl 4-hydroxylase su 94.0 0.21 7E-06 39.0 7.9 70 399-468 5-83 (104)
230 4gns_B Protein CSD3, chitin bi 92.3 0.28 9.7E-06 52.9 8.2 54 439-492 345-398 (754)
231 1wy6_A Hypothetical protein ST 90.8 5.6 0.00019 32.2 15.0 85 307-396 73-157 (172)
232 1qsa_A Protein (soluble lytic 90.8 18 0.00063 38.1 23.9 252 197-459 75-347 (618)
233 3u64_A Protein TP_0956; tetrat 90.2 1.8 6.2E-05 40.5 10.2 88 75-164 180-282 (301)
234 4h7y_A Dual specificity protei 90.2 2.2 7.5E-05 35.3 9.4 38 323-362 10-53 (161)
235 2p58_C Putative type III secre 89.9 4.6 0.00016 30.5 10.0 87 173-264 21-107 (116)
236 2uwj_G Type III export protein 89.5 4.3 0.00015 30.6 9.6 87 173-264 20-106 (115)
237 1nzn_A CGI-135 protein, fissio 89.1 1.6 5.4E-05 35.1 7.8 31 436-466 79-109 (126)
238 2qx5_A Nucleoporin NIC96; mRNA 87.6 8.2 0.00028 41.0 14.3 80 231-321 300-382 (661)
239 2v5f_A Prolyl 4-hydroxylase su 87.4 3.3 0.00011 31.9 8.8 59 129-187 10-74 (104)
240 2wpv_A GET4, UPF0363 protein Y 87.1 21 0.00071 33.9 18.0 132 96-238 36-178 (312)
241 4b4t_P 26S proteasome regulato 86.1 27 0.00094 35.1 17.0 311 138-496 30-388 (445)
242 4h7y_A Dual specificity protei 85.9 9.9 0.00034 31.5 10.7 38 222-260 10-53 (161)
243 1nzn_A CGI-135 protein, fissio 84.9 6.9 0.00024 31.3 9.3 84 342-430 17-106 (126)
244 3ffl_A Anaphase-promoting comp 84.5 6.7 0.00023 33.1 9.4 112 302-428 27-151 (167)
245 2wpv_A GET4, UPF0363 protein Y 84.3 29 0.00098 32.9 19.8 168 196-390 35-216 (312)
246 4b4t_P 26S proteasome regulato 84.3 27 0.00093 35.1 16.0 32 55-86 53-84 (445)
247 2ff4_A Probable regulatory pro 82.5 2 7E-05 42.7 6.6 66 435-500 175-245 (388)
248 2p58_C Putative type III secre 81.6 15 0.00051 27.8 9.1 87 275-367 22-108 (116)
249 1v54_E Cytochrome C oxidase po 81.5 5.3 0.00018 30.4 6.8 61 344-408 28-88 (109)
250 1v54_E Cytochrome C oxidase po 81.3 6.6 0.00023 29.9 7.2 57 44-101 31-87 (109)
251 2uwj_G Type III export protein 81.1 14 0.00048 27.9 8.8 87 275-367 21-107 (115)
252 3lpz_A GET4 (YOR164C homolog); 80.3 42 0.0014 32.1 21.1 167 197-390 38-215 (336)
253 3lpz_A GET4 (YOR164C homolog); 77.7 50 0.0017 31.5 23.7 165 300-493 40-215 (336)
254 4gns_B Protein CSD3, chitin bi 77.6 19 0.00065 38.9 12.4 53 168-221 346-398 (754)
255 2ff4_A Probable regulatory pro 76.8 14 0.00049 36.5 10.7 69 330-401 175-247 (388)
256 4fhn_B Nucleoporin NUP120; pro 76.0 51 0.0018 37.9 16.4 144 265-417 817-989 (1139)
257 4ady_A RPN2, 26S proteasome re 75.8 1E+02 0.0035 34.1 21.5 18 133-150 383-400 (963)
258 1wdy_A 2-5A-dependent ribonucl 74.2 35 0.0012 31.2 12.4 46 274-319 193-240 (285)
259 1y8m_A FIS1; mitochondria, unk 74.1 35 0.0012 27.9 12.2 45 449-493 60-105 (144)
260 1wdy_A 2-5A-dependent ribonucl 73.8 53 0.0018 29.9 14.0 81 201-282 152-238 (285)
261 4fhn_B Nucleoporin NUP120; pro 72.3 23 0.00079 40.8 12.3 124 367-497 817-970 (1139)
262 2y69_E Cytochrome C oxidase su 72.2 14 0.00048 29.8 7.1 61 344-408 71-131 (152)
263 1zbp_A Hypothetical protein VP 70.3 37 0.0013 31.2 10.6 122 335-465 6-134 (273)
264 2y69_E Cytochrome C oxidase su 70.1 16 0.00055 29.4 7.0 49 51-100 81-129 (152)
265 3kea_A K1L; tropism, ANK repea 69.2 35 0.0012 31.7 11.0 20 99-118 65-84 (285)
266 3o48_A Mitochondria fission 1 67.6 32 0.0011 27.7 8.5 28 437-464 84-111 (134)
267 3ltm_A Alpha-REP4; protein eng 66.6 65 0.0022 28.0 18.2 18 192-209 124-141 (211)
268 3txn_A 26S proteasome regulato 65.2 1.1E+02 0.0037 30.1 14.7 162 296-459 20-209 (394)
269 3o48_A Mitochondria fission 1 62.6 20 0.00069 28.9 6.5 71 359-431 37-111 (134)
270 4b4t_S RPN3, 26S proteasome re 61.6 54 0.0018 33.4 10.9 178 295-497 231-432 (523)
271 1y8m_A FIS1; mitochondria, unk 61.2 56 0.0019 26.7 8.9 32 435-466 81-112 (144)
272 3ltj_A Alpharep-4; protein eng 60.9 80 0.0027 27.1 20.2 59 294-353 120-178 (201)
273 3ltj_A Alpharep-4; protein eng 60.7 80 0.0027 27.1 19.0 18 192-209 119-136 (201)
274 1k1a_A B-cell lymphoma 3-encod 60.7 61 0.0021 28.7 10.7 48 70-117 18-67 (241)
275 4ady_A RPN2, 26S proteasome re 60.2 2.1E+02 0.0072 31.7 26.8 215 204-425 384-620 (963)
276 3ffl_A Anaphase-promoting comp 59.8 78 0.0027 26.6 10.7 123 87-222 12-150 (167)
277 3ltm_A Alpha-REP4; protein eng 59.7 87 0.003 27.1 19.7 61 293-354 124-184 (211)
278 2nsz_A Programmed cell death p 59.0 44 0.0015 26.8 8.1 64 197-260 10-78 (129)
279 2qx5_A Nucleoporin NIC96; mRNA 58.4 1.9E+02 0.0065 30.6 17.3 33 398-430 532-569 (661)
280 1zbp_A Hypothetical protein VP 56.1 15 0.00052 33.7 5.3 54 410-463 8-63 (273)
281 3eiq_C Programmed cell death p 54.2 1.6E+02 0.0054 28.4 15.2 63 197-259 220-287 (358)
282 3kea_A K1L; tropism, ANK repea 53.8 1.2E+02 0.0043 27.7 11.8 113 100-221 35-153 (285)
283 1k1a_A B-cell lymphoma 3-encod 52.9 83 0.0028 27.7 10.2 15 205-219 87-101 (241)
284 2ion_A PDCD4, programmed cell 50.6 41 0.0014 27.9 6.7 64 197-260 12-80 (152)
285 1n11_A Ankyrin; clathrin, BAND 49.7 1E+02 0.0034 30.5 11.1 112 99-219 17-135 (437)
286 1oyz_A Hypothetical protein YI 49.5 1.5E+02 0.0052 26.9 22.4 20 221-240 138-157 (280)
287 2zu6_B Programmed cell death p 48.9 1.8E+02 0.006 27.4 12.3 26 198-223 170-195 (307)
288 4b4t_R RPN7, 26S proteasome re 47.7 91 0.0031 31.1 10.2 95 297-391 133-237 (429)
289 3hra_A Ankyrin repeat family p 47.6 83 0.0028 26.7 9.0 17 104-120 13-29 (201)
290 4b4t_R RPN7, 26S proteasome re 47.4 1.1E+02 0.0037 30.5 10.7 96 328-425 133-234 (429)
291 2nsz_A Programmed cell death p 47.4 92 0.0031 24.9 8.2 62 96-157 10-76 (129)
292 3eiq_C Programmed cell death p 45.0 1.5E+02 0.0052 28.6 10.7 71 228-299 220-292 (358)
293 3jxi_A Vanilloid receptor-rela 44.1 43 0.0015 30.3 6.8 51 68-118 12-71 (260)
294 2zu6_B Programmed cell death p 43.7 1.4E+02 0.0049 28.0 10.2 199 96-296 6-238 (307)
295 2r9g_A AAA ATPase, central reg 43.3 1.5E+02 0.0051 25.7 9.1 61 230-291 16-84 (204)
296 3b7b_A Euchromatic histone-lys 42.9 59 0.002 28.7 7.4 80 33-118 15-99 (237)
297 3eu9_A Huntingtin-interacting 42.7 74 0.0025 27.9 8.1 78 36-118 16-98 (240)
298 2l0z_A Glycoprotein G2; zinc-b 40.8 8.6 0.00029 23.3 0.7 18 616-633 11-29 (42)
299 1ug3_A EIF4GI, eukaryotic prot 39.7 1.9E+02 0.0066 27.6 10.7 91 198-288 15-113 (339)
300 3jxi_A Vanilloid receptor-rela 39.3 41 0.0014 30.4 5.7 53 133-185 11-72 (260)
301 3eu9_A Huntingtin-interacting 39.1 1.4E+02 0.0046 26.1 9.3 19 100-118 46-64 (240)
302 3ljn_A Hypothetical protein; a 37.8 73 0.0025 30.6 7.6 87 57-149 17-106 (364)
303 3hra_A Ankyrin repeat family p 37.0 1.3E+02 0.0046 25.4 8.6 146 62-217 41-198 (201)
304 3ljn_A Hypothetical protein; a 34.9 1.1E+02 0.0039 29.2 8.5 14 411-424 253-266 (364)
305 4g8k_A 2-5A-dependent ribonucl 33.0 3.1E+02 0.01 25.6 15.5 53 33-91 29-85 (337)
306 3b7b_A Euchromatic histone-lys 32.7 1.9E+02 0.0064 25.2 9.1 141 66-220 16-167 (237)
307 1bd8_A P19INK4D CDK4/6 inhibit 32.6 96 0.0033 25.0 6.6 15 205-219 109-123 (156)
308 3esl_A Checkpoint serine/threo 31.5 2.6E+02 0.0089 24.3 9.4 73 447-544 95-169 (202)
309 2d2s_A Exocyst complex compone 31.4 2.4E+02 0.0082 25.2 9.2 21 232-252 25-45 (235)
310 2rfa_A Transient receptor pote 30.9 2.2E+02 0.0075 24.7 9.2 21 236-256 162-182 (232)
311 2d2s_A Exocyst complex compone 30.2 1.7E+02 0.0059 26.2 8.0 23 130-152 24-46 (235)
312 3ctd_A Putative ATPase, AAA fa 30.1 2.8E+02 0.0095 24.3 8.7 47 228-274 35-84 (213)
313 2k0q_A Putative uncharacterize 30.0 17 0.0006 25.1 1.0 22 610-631 8-29 (74)
314 4b4t_S RPN3, 26S proteasome re 29.6 1.5E+02 0.005 30.3 8.0 61 363-425 232-296 (523)
315 3bge_A Predicted ATPase; struc 29.3 2.2E+02 0.0075 24.6 7.9 45 230-274 9-56 (201)
316 3qye_A TBC1 domain family memb 28.8 3.7E+02 0.013 25.3 11.0 41 149-189 213-253 (331)
317 2ion_A PDCD4, programmed cell 28.8 1.5E+02 0.0051 24.5 6.8 70 227-297 11-82 (152)
318 4a1g_A Mitotic checkpoint seri 28.4 2.5E+02 0.0085 23.1 8.6 111 227-338 12-144 (152)
319 3i5p_A Nucleoporin NUP170; hel 28.4 4.9E+02 0.017 26.5 12.2 68 428-495 175-247 (525)
320 1n11_A Ankyrin; clathrin, BAND 27.5 3.4E+02 0.012 26.4 10.8 17 203-219 86-102 (437)
321 3ygs_P Procaspase 9; apoptosis 26.4 97 0.0033 23.2 4.8 38 107-144 51-88 (97)
322 3aji_A 26S proteasome non-ATPa 24.7 2.5E+02 0.0087 24.2 8.4 19 100-118 10-28 (231)
323 1oyz_A Hypothetical protein YI 24.7 3.8E+02 0.013 24.0 24.1 81 292-376 139-220 (280)
324 3ygs_P Procaspase 9; apoptosis 24.5 92 0.0031 23.3 4.4 38 309-346 51-88 (97)
325 2fe3_A Peroxide operon regulat 24.2 1.6E+02 0.0056 23.8 6.3 38 172-209 34-71 (145)
326 2fe3_A Peroxide operon regulat 23.8 2E+02 0.0067 23.3 6.7 63 351-417 12-74 (145)
327 2p1h_A APAF-1, apoptotic prote 23.1 2.3E+02 0.0077 20.8 7.1 63 77-143 24-86 (94)
328 2p1h_A APAF-1, apoptotic prote 22.9 2.3E+02 0.0078 20.8 6.4 61 179-243 25-85 (94)
329 3aji_A 26S proteasome non-ATPa 21.5 3.4E+02 0.012 23.3 8.6 53 65-118 10-62 (231)
330 1oai_A Nuclear RNA export fact 21.4 57 0.002 21.9 2.3 24 339-362 33-56 (59)
331 2xig_A Ferric uptake regulatio 21.3 2.6E+02 0.0089 22.8 7.0 62 351-416 17-78 (150)
332 2rfa_A Transient receptor pote 21.3 3.5E+02 0.012 23.3 8.6 25 166-190 158-182 (232)
333 2etb_A Transient receptor pote 21.2 95 0.0032 27.8 4.7 27 66-92 7-33 (256)
334 2hgo_A CASSIICOLIN; toxin, dis 21.1 20 0.00067 18.7 -0.1 13 622-634 8-22 (27)
335 1bd8_A P19INK4D CDK4/6 inhibit 20.7 1.4E+02 0.0048 23.9 5.4 12 308-319 111-122 (156)
336 3l6a_A Eukaryotic translation 20.4 3.2E+02 0.011 26.3 8.4 124 198-321 16-148 (364)
337 4gq2_M Nucleoporin NUP120; bet 20.4 7.2E+02 0.025 27.6 12.4 107 301-424 816-922 (950)
338 4gq2_M Nucleoporin NUP120; bet 20.2 6.9E+02 0.024 27.7 12.2 127 200-340 816-950 (950)
339 3d9h_A CDNA FLJ77766, highly s 20.1 1.9E+02 0.0065 26.4 6.7 216 90-320 9-244 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-39 Score=351.02 Aligned_cols=430 Identities=10% Similarity=-0.024 Sum_probs=373.2
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcC--CCCcchHHHHHH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMR--ERNVVSWTAMIS 132 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 132 (634)
.++...|+.++..|.+.|++++|..+++.+.+. .|+..++..++..|.+.|++++|..+|+.+. .++..+|+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 357778888888888888888888888888854 4677788888888888888888888888873 478888888888
Q ss_pred HHHhCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH-
Q 006705 133 AYSQKAHSFEALNLFIRMLRS---------------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV- 196 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~- 196 (634)
+|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+.+.+.+ +.+...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 888888888888888853221 223356788888888888888888888888888765 223333
Q ss_pred -------------------------------------HHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHh
Q 006705 197 -------------------------------------GSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQ 237 (634)
Q Consensus 197 -------------------------------------~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~ 237 (634)
++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 33346677789999999999999987 799999999999999
Q ss_pred cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRV 317 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 317 (634)
.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999875 4477889999999999999999999999999765 66789999999999999999999999
Q ss_pred HhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 006705 318 FDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG 394 (634)
Q Consensus 318 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 394 (634)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .+++..++..++.+|.+.|++++|.++|+.+.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 470 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--- 470 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 99875 347889999999999999999999999999986 4557899999999999999999999999999974
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 395 FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-------PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 395 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++.+.+|+++
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 2457899999999999999999999999987 44677 78999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-37 Score=339.73 Aligned_cols=440 Identities=8% Similarity=-0.049 Sum_probs=383.5
Q ss_pred CCCChhhHHHhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVF 102 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 102 (634)
...++.++..+.+.|+.. .+|++|.. ..|+..++..+..+|.+.|++++|..+|+.+... +++..+++.++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 334567888999999876 56777774 5678899999999999999999999999988654 6789999999999
Q ss_pred HHcCCChHHHHHHHhhcCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhH
Q 006705 103 YNKCECLSDARKMFDEMRER-------------------NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE-FTF 162 (634)
Q Consensus 103 y~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 162 (634)
|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|...+ |+. ..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 99999999999999964433 47899999999999999999999999998753 432 222
Q ss_pred HH--------------------------------------HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006705 163 AT--------------------------------------VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMY 204 (634)
Q Consensus 163 ~~--------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 204 (634)
.. ++..|.+.|++++|.++++.+.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 244566788999999999998765 68899999999999
Q ss_pred HhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHH
Q 006705 205 AKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQ 281 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 281 (634)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|++|.... +.+..++..+...|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999998853 477899999999999999999999999998653 5578899999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006705 282 VHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358 (634)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 358 (634)
++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999999865 5578899999999999999999999999875 347899999999999999999999999999986 3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHH
Q 006705 359 KPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAA 432 (634)
Q Consensus 359 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~ 432 (634)
+.+..+|..+...|.+.|++++|.++|+.+.+..+ +..|+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 55789999999999999999999999999986411 33666 789999999999999999999999987 22 34789
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
+|..+..+|...|++++|...++++++++|+++..+..|.++|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988854
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=257.83 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=174.5
Q ss_pred HHHHHHHHcCCCCCH-hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 006705 44 KALIEMATLGLEMRF-EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRER 122 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 122 (634)
.+++++.+.+..+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 456677777765543 457888999999999999999999999999999999999999998887754332
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+||.
T Consensus 81 ------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 ------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp ------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 23445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 203 MYAKAGRIHEARGVFECLP----ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..++..+
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999985 47999999999999999999999999999999999999999999999887643
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.5e-28 Score=253.72 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc---------hHHHHHHHHHHHHcCCCCchh
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA---------LGHGKQVHSHVLRFEIPSYVV 296 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~~~~~~~~ 296 (634)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999986553 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMS----ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.||..||++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999986 479999999999999999999999999999999 9999999999999999
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA 412 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 412 (634)
++.|++++|.+++++|.+. ++.|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~--g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL--VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999987 9999999999999988753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-25 Score=229.99 Aligned_cols=371 Identities=12% Similarity=0.109 Sum_probs=254.0
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChh
Q 006705 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSF 141 (634)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 141 (634)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556777777777777777664 33445555666667777777777777765543 35566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC
Q 006705 142 EALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220 (634)
Q Consensus 142 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 220 (634)
+|+..|+++... .|+ ..+|..+..++...|++++|.+.+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777653 343 3456667777777777777777777776654 334455556666666666666666666655
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhH
Q 006705 221 PE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVL 297 (634)
Q Consensus 221 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 297 (634)
.. .+..+|+.+...|.+.|++++|+..|+++.+.. | .+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p----------------------------------~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--P----------------------------------NFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C----------------------------------CcHHH
Confidence 32 234566666666666666666666666665532 2 22334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+. .+.+..++..+..++..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence 4455555666666666666665543 224567777777788888888888888887765 23345677777888888
Q ss_pred cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|++++|...|+.+.+. .+.+..++..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|..
T Consensus 284 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888763 2456778888888888888888888888876 33 3356778888888888888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.++++.++.|+++..|..++.+|.+.|+
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888888888888777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1e-24 Score=224.31 Aligned_cols=353 Identities=14% Similarity=0.106 Sum_probs=303.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 131 ISAYSQKAHSFEALNLFIRMLRSDTEPN-EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
...+.+.|++++|++.+..+... .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667789999999999888764 444 4455556667788899999999998888764 6678889999999999999
Q ss_pred HHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hhHHHHHHHHhcccchHHHHHHHHH
Q 006705 210 IHEARGVFECLPE--R-DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VTYASVLTALSGLAALGHGKQVHSH 285 (634)
Q Consensus 210 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~ 285 (634)
+++|.+.|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999987743 3 5568999999999999999999999999875 4554 4566677778889999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
+++.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .+.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98875 55678899999999999999999999998863 35678999999999999999999999999875 23356
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 440 (634)
.++..+..++...|++++|...|+.+.+. -+.+..+|..++..|.+.|++++|.+.|+++ ..+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 88899999999999999999999999964 2345788999999999999999999999987 234678899999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-22 Score=213.72 Aligned_cols=426 Identities=10% Similarity=-0.067 Sum_probs=318.7
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHH
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYS 135 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 135 (634)
..+...-..+.+.|+++.|...|+.+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456666777888999999999999999885 6888999999999999999999999997754 35678999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHH---HHHHHhcCCHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSL---LDMYAKAGRIHE 212 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~~ 212 (634)
+.|++++|+..|+++...+. ++......++..+........+.+.+..+.+.+..|+....+.- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988653 34444444444443333223333333222221111111100000 011111111222
Q ss_pred HHHHHccCC---------CC-ChhhHHHHHHHHHh---cCChHHHHHHHHHHhh-----cCC--------ccChhhHHHH
Q 006705 213 ARGVFECLP---------ER-DVVSCTAIISGYAQ---LGLDEEAIELFRKLQV-----EGM--------ISNYVTYASV 266 (634)
Q Consensus 213 A~~~~~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~l 266 (634)
+...+.... .+ +...|......+.. .|++++|+.+|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 24455555555554 8999999999999987 311 2234567778
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChH
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGR 343 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 343 (634)
...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988644 88889999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
+|+..|++..+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999886 3345678888999999999999999999999864 24467889999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 424 NM----PFEPT----AAILGSLLGACRV---HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 424 ~m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
++ +..++ ...|..+...+.. .|+++.|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 86 22233 4488899999999 9999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.2e-21 Score=205.48 Aligned_cols=335 Identities=11% Similarity=0.045 Sum_probs=236.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|..+...|.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666677777777777777777766532 2345566666666667777777777777766654 445566666777
Q ss_pred HHHhcCCHHHHHHHHccCCCC---Ch---hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 203 MYAKAGRIHEARGVFECLPER---DV---VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
+|.+.|++++|.+.|+++... +. ..|..++..+...+ +......+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 777777777777777666442 22 44544444321111 11122234445555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 277 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665555543 4456677778888888888888888888775 3467888899999999999999999999988
Q ss_pred HcCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHhhhccCCccCC-----hHHHHHHHHHHHHcCCH
Q 006705 354 EENKVKPDS-VTYLAV------------LSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-----IEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 354 ~~~g~~pd~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 415 (634)
.. .|+. ..+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 65 3443 333333 67889999999999999999864 344 45889999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHH------------HHHhhcC--
Q 006705 416 GEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILS------------NLYASAG-- 479 (634)
Q Consensus 416 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 479 (634)
++|+..++++ .. +.+...|..+..+|...|++++|...+++++++.|+++..+..+. +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999986 32 346889999999999999999999999999999999988888888 4465556
Q ss_pred ---CcHHHHHHHHH
Q 006705 480 ---RWEDVTRVREL 490 (634)
Q Consensus 480 ---~~~~A~~~~~~ 490 (634)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 44455555554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-21 Score=204.48 Aligned_cols=428 Identities=9% Similarity=-0.060 Sum_probs=303.2
Q ss_pred HhhhcCcHH---HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHH
Q 006705 35 TLCSNGQLT---KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111 (634)
Q Consensus 35 ~~~~~~~~~---~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 111 (634)
.+.+.|+.. ..|+++.... ||..+|..+..++...|+++.|...++.+++.+ +.+...+..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 455667655 5577777765 799999999999999999999999999999986 5567789999999999999999
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006705 112 ARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS 188 (634)
Q Consensus 112 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 188 (634)
|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...............+...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999998754 3444555555555544444444444433322222222222111111111111111111111111111
Q ss_pred CC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHccCCC----------------C-ChhhHHHHHHHHHhcC
Q 006705 189 NF---------ESHIYVGSSLLDMYAK---AGRIHEARGVFECLPE----------------R-DVVSCTAIISGYAQLG 239 (634)
Q Consensus 189 g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g 239 (634)
.. +.+...+..+...+.. .|++++|...|+++.. + +..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 10 1224444444444444 7888888888876543 1 3457788888899999
Q ss_pred ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006705 240 LDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988764 447778888888899999999999999888765 4567788889999999999999999998
Q ss_pred hcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCcc
Q 006705 320 NMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFE 396 (634)
Q Consensus 320 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 396 (634)
++. ..+...|..+...|...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.. .-.
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~ 405 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKL 405 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hcc
Confidence 865 346778888999999999999999999998876 33456788888889999999999999999987642 111
Q ss_pred CC----hHHHHHHHHHHHH---cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 397 PE----IEHYGCVVDMLGR---AGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 397 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
++ ...+..+...|.+ .|++++|...++++ . .+.+..+|..+...+...|++++|...++++.++.|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 22 3488899999999 99999999999886 2 23467788889999999999999999999999999987666
Q ss_pred HHHH
Q 006705 468 YVIL 471 (634)
Q Consensus 468 ~~~l 471 (634)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.2e-20 Score=202.66 Aligned_cols=422 Identities=9% Similarity=-0.040 Sum_probs=323.9
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHH
Q 006705 58 FEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAY 134 (634)
Q Consensus 58 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 134 (634)
...|..+...+.+.|+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4556777788899999999999999999986 55788899999999999999999999998754 4677899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCHHH
Q 006705 135 SQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN--FESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
...|++++|+..|+.+.. .|+... ..+..+...+....+...+..+++.. ..+........+..|....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999974422 232221 11223333444567777777775431 01111112344556777888888
Q ss_pred HHHHHccCCCCChh---hHHHHHHHHHhc--------CChHHHHHHHHHHhhcCCccCh--------hhHHHHHHHHhcc
Q 006705 213 ARGVFECLPERDVV---SCTAIISGYAQL--------GLDEEAIELFRKLQVEGMISNY--------VTYASVLTALSGL 273 (634)
Q Consensus 213 A~~~~~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~ 273 (634)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+. .++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88888877765443 344444333322 4789999999999875 3442 2455666777888
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
|++++|...+..+.+.. |+...+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 447888899999999999999999999876 3467889999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----P 426 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 426 (634)
+..+. .+.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99886 2334578888999999999999999999999874 2446778999999999999999999999886 1
Q ss_pred C----CCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 427 F----EPTAAILGSLLGACRVH----------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 427 ~----~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
. ......+..+...+... |++++|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11223344455667777 999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 006705 493 EK 494 (634)
Q Consensus 493 ~~ 494 (634)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=3.1e-20 Score=194.72 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=185.8
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTS 168 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 168 (634)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++...+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555555555556666666666555432 344555556666666666666666666655532 1234455555555
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCch---HHHHHH------------HHHHHhcCCHHHHHHHHccCCC---CChhhHHH
Q 006705 169 CAGAFGFELGKQIHSLIIKSNFESHI---YVGSSL------------LDMYAKAGRIHEARGVFECLPE---RDVVSCTA 230 (634)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~ 230 (634)
+...|++++|...+..+.+.. +.+. .++..+ ...|.+.|++++|...|+++.. .+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 666666666666666555432 2222 334434 3345666666666666665432 34556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS 310 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 310 (634)
+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+... +
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~----~- 255 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV----K- 255 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----H-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----H-
Confidence 6666666666666666666665432 2334555555555555566666665555555442 2222222222000 0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHH
Q 006705 311 LTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-----SVTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 311 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
....+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...+
T Consensus 256 --------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 256 --------------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0001122256666667777777777766654 233 235556666666777777777777
Q ss_pred HHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----C
Q 006705 386 HEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-AAILGSLLGA------------CRVHY-----N 446 (634)
Q Consensus 386 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~~-----~ 446 (634)
+.+.+. .+.+...|..+..+|.+.|++++|...++++ ...|+ ...+..+..+ |...| +
T Consensus 319 ~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 319 SEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 766642 1234666667777777777777777776665 33333 3344444322 22233 4
Q ss_pred chHHHHHHHH-HhccCCCC
Q 006705 447 VDIGEFVGQR-LMEIEPEN 464 (634)
Q Consensus 447 ~~~a~~~~~~-~~~~~p~~ 464 (634)
.+++...+++ ..+..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5566777765 66777764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.2e-18 Score=186.99 Aligned_cols=420 Identities=10% Similarity=0.010 Sum_probs=309.7
Q ss_pred HhhhcCc---HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHH
Q 006705 35 TLCSNGQ---LTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSD 111 (634)
Q Consensus 35 ~~~~~~~---~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 111 (634)
.+.+.|+ +.+.|++...... .+...|..+...+...|+++.|...++.+++.+ +.+...+..+...|.+.|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 3445554 3467777776542 367889999999999999999999999999986 5567888999999999999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHH
Q 006705 112 ARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLI 185 (634)
Q Consensus 112 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 185 (634)
|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...... +....+.+.+...+...
T Consensus 112 A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhc
Confidence 999997543 33333444456666777778999999998653 22344433333 33333433333222111
Q ss_pred HHhCCCCc-hHHHHHHHHHHHhc--------CCHHHHHHHHccCCCC--C--------hhhHHHHHHHHHhcCChHHHHH
Q 006705 186 IKSNFESH-IYVGSSLLDMYAKA--------GRIHEARGVFECLPER--D--------VVSCTAIISGYAQLGLDEEAIE 246 (634)
Q Consensus 186 ~~~g~~~~-~~~~~~li~~y~~~--------g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~ 246 (634)
.. ..+. ......+...|... |++++|..+|+++.+. + ..+|..+...+...|++++|+.
T Consensus 187 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 10 1111 12334444443322 5789999999887652 2 2356777788899999999999
Q ss_pred HHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 006705 247 LFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--- 323 (634)
Q Consensus 247 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--- 323 (634)
.|++.... .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99999986 4667788888999999999999999999999876 55788899999999999999999999998763
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC---CccCChH
Q 006705 324 RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD---GFEPEIE 400 (634)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~p~~~ 400 (634)
.+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|++++|...|+.+.+..+ .......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 46788999999999999999999999999886 344567888899999999999999999999876420 1111233
Q ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 401 HYGCVVDMLGRA----------GRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 401 ~~~~li~~~~~~----------g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
.+..+...|.+. |++++|...|++. . .+.+...|..+...+...|++++|...++++.++.|.+....
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 355566778888 9999999999987 2 234678899999999999999999999999999999865543
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2e-19 Score=179.98 Aligned_cols=321 Identities=14% Similarity=0.122 Sum_probs=154.9
Q ss_pred cCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHH
Q 006705 105 KCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSL 184 (634)
Q Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 184 (634)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7788999999999997664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHH
Q 006705 185 IIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYA 264 (634)
Q Consensus 185 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 264 (634)
+.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 4799
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHH
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999987 378899999999999999999988877765 444445568999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC------ChHHHHHHHHHHHHcCCHH
Q 006705 345 VVELFNLMREENKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP------EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~ 416 (634)
|+.+++..... . +-... |...++-+-.+.+++.+.++.|..-. +++| +...|..++-.|...++++
T Consensus 226 ai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i----ni~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 226 LITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS----CHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999988754 1 22334 44444444455666667766665433 5666 5778999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 417 EALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 417 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
.|...+-+-+ |+..--..+.....+-.+.+.--++..-.++..|
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 9988766543 3322223344444555555544444333333333
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.9e-17 Score=167.43 Aligned_cols=323 Identities=10% Similarity=-0.001 Sum_probs=208.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
|+..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777888888888888888877642 2245566666777777777777777777777654 345566666777
Q ss_pred HHHhcCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 203 MYAKAGRIHEARGVFECLPERD------VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
.|.+.|++++|...|++....+ ...|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777766654322 222222211000 00111223445555666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 277 GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 277 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666665553 34556666677777777777777777776543 356677777777888888888888888777
Q ss_pred HcCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhhhccCCccCC-h----HHHHHHHHHHHHcCCHH
Q 006705 354 EENKVKPDSVTYL------------AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE-I----EHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 354 ~~~g~~pd~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~ 416 (634)
+. .+.+...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|+++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 65 122222222 2245577788888888888888764 232 2 23555777888888888
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 417 EALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 417 ~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
+|.+.+++. . .+.+..+|..+...+...|++++|...++++.+++|+++..+..+..++..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888776 2 233677788888888888888888888888888888877776666665543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.6e-17 Score=165.32 Aligned_cols=305 Identities=10% Similarity=0.024 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGY 235 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 235 (634)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455666667777788888888887777764 44566777777777777777777777776542 3556777777777
Q ss_pred HhcCChHHHHHHHHHHhhcCCcc---Ch-hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 006705 236 AQLGLDEEAIELFRKLQVEGMIS---NY-VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL 311 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 311 (634)
...|++++|+..|++..+. .| +. ..+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777654 34 21 111111111 00 11223346788999999
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 006705 312 TYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEI 388 (634)
Q Consensus 312 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 388 (634)
++|...|+++. ..+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 347788999999999999999999999999875 3556788899999999999999999999999
Q ss_pred hhccCCccCChHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCchHH
Q 006705 389 VDCKDGFEPEIEHYG------------CVVDMLGRAGRVGEALEFIKNM-PFEPT-AA----ILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 389 ~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~----~~~~ll~~~~~~~~~~~a 450 (634)
.+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ .. .+..+...+...|+++.|
T Consensus 215 ~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 8642 22333333 3367799999999999999986 22333 32 244567889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...++++.+..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.2e-17 Score=163.73 Aligned_cols=286 Identities=11% Similarity=0.005 Sum_probs=185.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHH
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 268 (634)
.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444445555555566666666666655432 233445555556666666666666666665542 223445555555
Q ss_pred HHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHH
Q 006705 269 ALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 269 ~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 566666 6666666666665543 33455666677777777777777777766542 245566667777777777788
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC------ccCChHHHHHHHHHHHHcCCHHHH
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG------FEPEIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A 418 (634)
|++.|++..+. .+.+..++..+...+...|++++|...++.+.+..+. .+.....+..+...|.+.|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 88777777764 3344566777777777778888887777777653100 133456778888888888888888
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH-hhcCCc
Q 006705 419 LEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY-ASAGRW 481 (634)
Q Consensus 419 ~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 481 (634)
...+++. . .+.+...|..+...+...|++++|...++++.++.|+++..+..++.+| ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888775 1 1335667778888888888888888888888888888888888888877 455553
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.1e-15 Score=161.46 Aligned_cols=210 Identities=7% Similarity=-0.006 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHhc
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSK-------CGSLT-------YSRRVFDNMSE---R-TVISWNAMLVGYSKH 339 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~~~li~~~~~~ 339 (634)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5667788777763 5567788888887775 68876 88999988763 3 577888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH-HHHcCCHH
Q 006705 340 GMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM-LGRAGRVG 416 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~ 416 (634)
|++++|.++|+++.+. .|+. ..|...+..+.+.|++++|..+|+...+.. +.+...|...+.+ +...|+.+
T Consensus 335 g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHcCChh
Confidence 9999999999998874 4542 477888888888889999999999988531 2233334333323 33688999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc----hHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 417 EALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG----NYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 417 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+|..+|++. .. +.+...|..++......|+.+.|..+++++....|.++. .|...+....+.|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999875 22 235778888888888899999999999999888766554 666777778888999999988888
Q ss_pred HhhC
Q 006705 491 MKEK 494 (634)
Q Consensus 491 m~~~ 494 (634)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.9e-15 Score=157.63 Aligned_cols=365 Identities=11% Similarity=-0.004 Sum_probs=267.0
Q ss_pred ChhHHHHHHHHHHc----CCChHHHHHHHhhcCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhH
Q 006705 92 PVYLRTRLIVFYNK----CECLSDARKMFDEMRE-RNVVSWTAMISAYSQ----KAHSFEALNLFIRMLRSDTEPNEFTF 162 (634)
Q Consensus 92 ~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 162 (634)
+......|-..|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++....| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45555566666665 6777777777766543 355667777777777 777777777777777654 44555
Q ss_pred HHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHH
Q 006705 163 ATVLTSCAG----AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAK----AGRIHEARGVFECLPE-RDVVSCTAIIS 233 (634)
Q Consensus 163 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 233 (634)
..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555556655 677788888887777765 45566667777776 6778888888876543 46667777777
Q ss_pred HHHh----cCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 234 GYAQ----LGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 234 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
.|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788888888888877654 34455555555554 678888888888877764 345666677777
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 006705 306 SK----CGSLTYSRRVFDNMSE-RTVISWNAMLVGYSKH-----GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG 375 (634)
Q Consensus 306 ~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~ 375 (634)
.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+. | +...+..+...+...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 77 7889999999988765 3667777888888877 8999999999998886 4 345566666666665
Q ss_pred C---cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006705 376 G---MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACRV----H 444 (634)
Q Consensus 376 g---~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 444 (634)
| ++++|.++|+...+. + +...+..|..+|.. .+++++|.+.|++.....+...+..|...|.. .
T Consensus 342 g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK--G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCcccHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 6 788999999998864 3 67888889999988 89999999999987334467788888888887 8
Q ss_pred CCchHHHHHHHHHhccCCC---CCchHHHHHHHHhh
Q 006705 445 YNVDIGEFVGQRLMEIEPE---NAGNYVILSNLYAS 477 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 477 (634)
++.++|...++++.+.+|+ ++.....|..++.+
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 55666666666554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.9e-16 Score=156.68 Aligned_cols=265 Identities=11% Similarity=0.021 Sum_probs=231.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 223 RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 223 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466677888889999999999999999998764 3455667778888899999999999999999875 55788899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 303 DMYSKCG-SLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 303 ~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
..|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+. .+.+..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999998764 36778999999999999999999999999886 233457777788899999999
Q ss_pred HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----C-------CCCCHHHHHHHHHHHHhcCCc
Q 006705 379 DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----P-------FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-------~~p~~~~~~~ll~~~~~~~~~ 447 (634)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. + .+.+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999863 3456789999999999999999999999876 1 033467899999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
++|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999988653
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.4e-15 Score=161.02 Aligned_cols=399 Identities=9% Similarity=0.014 Sum_probs=290.6
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAY 134 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 134 (634)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|.++|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 66778888874 67899999999999998763 55677899999999999999999999999876 7777888777533
Q ss_pred -HhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------cCCcHHHHHHHHHHHHhCCCCchHHHH
Q 006705 135 -SQKAHSFEALN----LFIRMLR-SDTEPN-EFTFATVLTSCAG---------AFGFELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 135 -~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.|..++..+++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 45677777665 6776654 355554 4455555554433 678899999999988731111123343
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHcc-------CC------CCC--------hhhHHHHHHHHHhc----CC
Q 006705 199 SLLDMY-------------AKAGRIHEARGVFEC-------LP------ERD--------VVSCTAIISGYAQL----GL 240 (634)
Q Consensus 199 ~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----g~ 240 (634)
...... .+.++++.|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 322211 123556777765543 11 122 34676666543332 23
Q ss_pred h----HHHHHHHHHHhhcCCccChhhHHHHHHHHhc-------ccchH-------HHHHHHHHHHHcCCCCchhHHHHHH
Q 006705 241 D----EEAIELFRKLQVEGMISNYVTYASVLTALSG-------LAALG-------HGKQVHSHVLRFEIPSYVVLQNSLI 302 (634)
Q Consensus 241 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~i~~~~~~~~~~~~~~~~~~li 302 (634)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47888999988752 3355667666666664 68877 8999999998743466788999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCc
Q 006705 303 DMYSKCGSLTYSRRVFDNMSE--R-TV-ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG-CSHGGM 377 (634)
Q Consensus 303 ~~~~~~g~~~~A~~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~ 377 (634)
..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .+.+...|...... +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999998763 3 33 58999999999999999999999999875 22233333332222 335899
Q ss_pred HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCchHHH
Q 006705 378 EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT--AAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 378 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a~ 451 (634)
+++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 407 ~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998742 346889999999999999999999999986 22332 558999999999999999999
Q ss_pred HHHHHHhccCCC
Q 006705 452 FVGQRLMEIEPE 463 (634)
Q Consensus 452 ~~~~~~~~~~p~ 463 (634)
.+..++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998885
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-16 Score=162.79 Aligned_cols=280 Identities=10% Similarity=-0.032 Sum_probs=213.1
Q ss_pred hcCCHHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchH
Q 006705 206 KAGRIHEARG-VFECLPE---R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALG 277 (634)
Q Consensus 206 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 277 (634)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6664432 1 34567778888888888888888888887753 345567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHH---------------HHHHHHhc
Q 006705 278 HGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNA---------------MLVGYSKH 339 (634)
Q Consensus 278 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~---------------li~~~~~~ 339 (634)
+|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888887775 45677788888888888888888888887653 2 2222221 23334488
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|+..|+++.+...-.++..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999886211125788899999999999999999999999864 2445789999999999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-----------CchHHHHHHHHhhcCCcHHHHH
Q 006705 420 EFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-----------AGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 420 ~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
..++++ .. +.+..+|..+...+...|++++|...++++.++.|++ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999986 22 3467889999999999999999999999999988876 6789999999999999999999
Q ss_pred HHHH
Q 006705 487 VREL 490 (634)
Q Consensus 487 ~~~~ 490 (634)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.7e-16 Score=161.36 Aligned_cols=257 Identities=12% Similarity=0.048 Sum_probs=131.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHhc
Q 006705 162 FATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP---ERDVVSCTAIISGYAQL 238 (634)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 238 (634)
+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3333333444444444444444444332 2233444444455555555555555554332 12444555555556666
Q ss_pred CChHHHHHHHHHHhhcCCccChh-hHHH---------------HHHHHhcccchHHHHHHHHHHHHcCCCC-chhHHHHH
Q 006705 239 GLDEEAIELFRKLQVEGMISNYV-TYAS---------------VLTALSGLAALGHGKQVHSHVLRFEIPS-YVVLQNSL 301 (634)
Q Consensus 239 g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~l 301 (634)
|++++|+..|+++.... |+.. .+.. .+..+...|++++|...+..+.+..... +..++..+
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 66666666666555432 2211 1110 1222235666666666666666554221 35556666
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGME 378 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 378 (634)
...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+. .+.+..++..+..++...|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCH
Confidence 666666666666666666544 224556666666666666666666666666554 223445566666666666666
Q ss_pred HHHHHHHHHhhhccCCc-c-------CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006705 379 DRGLAVFHEIVDCKDGF-E-------PEIEHYGCVVDMLGRAGRVGEALEFIK 423 (634)
Q Consensus 379 ~~a~~~~~~~~~~~~~~-~-------p~~~~~~~li~~~~~~g~~~~A~~~~~ 423 (634)
++|...|+.+.+..+.. . .....|..+..+|.+.|+.++|..+++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 66666666665421000 0 013555666666666666666655554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.9e-16 Score=160.82 Aligned_cols=262 Identities=10% Similarity=-0.054 Sum_probs=209.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988764 4466778888888889999999999999888875 556788888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-C----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE--R-T----------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
.|.+.|++++|...|+++.+ | + ...+..+...+.+.|++++|++.|+++.+...-.++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 2 1 223344578899999999999999999886211126788999999
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCch
Q 006705 371 GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 371 a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~ 448 (634)
.+...|++++|...|+.+.+. .+.+..+|..+...|.+.|++++|...|+++ .. +.+..+|..+..++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999864 2446889999999999999999999999986 22 345788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHhhcCCcHHHHHHHHH
Q 006705 449 IGEFVGQRLMEIEPE------------NAGNYVILSNLYASAGRWEDVTRVREL 490 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 490 (634)
+|...+++++++.|+ +...+..|..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988776 356788999999999999998887654
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=4.5e-14 Score=149.48 Aligned_cols=353 Identities=13% Similarity=0.016 Sum_probs=296.3
Q ss_pred CCCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCC
Q 006705 121 ERNVVSWTAMISAYSQ----KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG----AFGFELGKQIHSLIIKSNFES 192 (634)
Q Consensus 121 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 192 (634)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3577788888888888 899999999999998865 55677777777877 899999999999998876
Q ss_pred chHHHHHHHHHHHh----cCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHhhcCCccChhhH
Q 006705 193 HIYVGSSLLDMYAK----AGRIHEARGVFECLPE-RDVVSCTAIISGYAQ----LGLDEEAIELFRKLQVEGMISNYVTY 263 (634)
Q Consensus 193 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 263 (634)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778999998 8899999999988654 467788888888887 789999999999998865 56677
Q ss_pred HHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 006705 264 ASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAMLV 334 (634)
Q Consensus 264 ~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~ 334 (634)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 889999999999999876 56677888888886 8899999999998765 46778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 335 GYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHG-----GMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 335 ~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
.|.. .+++++|++.|++..+. | +...+..+...+... +++++|...|+...+. + +...+..|
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 334 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--G---DATAQANL 334 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--C---CHHHHHHH
Confidence 8888 89999999999999876 3 445666677777766 8999999999999875 3 56788889
Q ss_pred HHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh-
Q 006705 406 VDMLGRAG---RVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS- 477 (634)
Q Consensus 406 i~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 477 (634)
..+|.+.| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 99998867 789999999987334678889999999988 899999999999998865 46789999999998
Q ss_pred ---cCCcHHHHHHHHHHhhCCC
Q 006705 478 ---AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ---~g~~~~A~~~~~~m~~~~~ 496 (634)
.+++++|.+.+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987763
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=3.2e-16 Score=159.19 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=148.3
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHh
Q 006705 161 TFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQ 237 (634)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 237 (634)
.+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|++... .+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 35555555555555555555555555543 34555666666677777777777776665532 345677777777777
Q ss_pred cCChHHHHHHHHHHhhcCCccCh-h----------hHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CchhHHHHHHHHH
Q 006705 238 LGLDEEAIELFRKLQVEGMISNY-V----------TYASVLTALSGLAALGHGKQVHSHVLRFEIP-SYVVLQNSLIDMY 305 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~-~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~ 305 (634)
.|++++|+..|+++.+.. |+. . .+..+...+...|++++|...+..+++.... .+..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777776642 221 1 1222345566666666666666666665422 1455666666666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006705 306 SKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 382 (634)
.+.|++++|...|+++. ..+..+|+.+...|.+.|++++|++.|+++.+. .+.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666554 234556666666666666666666666666654 2233556666666666666666666
Q ss_pred HHHHHhhhccCCcc---------CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 383 AVFHEIVDCKDGFE---------PEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 383 ~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
..|+.+.+..+... .+...|..+...+...|+.+.|.++..+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 66666654310100 0244555566666666666655555544
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=7.2e-14 Score=155.41 Aligned_cols=380 Identities=12% Similarity=0.062 Sum_probs=282.8
Q ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 006705 59 EEYDTLLNACVNQRTLRGGQRVHAHMIKTC--YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQ 136 (634)
Q Consensus 59 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 136 (634)
.--....++|...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334566777888888888888888887432 123445666677666666 4455555554444222 4557778888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 006705 137 KAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGV 216 (634)
Q Consensus 137 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 216 (634)
.|.+++|..+|++.. -.....+.++. ..+++++|.++..++ .+..+|..+..++.+.|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999998852 11222233332 667888888887754 3477888999999999999999999
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchh
Q 006705 217 FECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVV 296 (634)
Q Consensus 217 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 296 (634)
|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++..
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 9664 677888899999999999999999998877654 34333445888899998888644442 2 34556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
.+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhh
Confidence 6667999999999999999999986 58999999999999999999999866 25688999999999999
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCchHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVH--YNVDIGEF 452 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~ 452 (634)
++..|......+ ..+++.+..++..|.+.|.+++|+.+++.. ...| ....|+-|...+.+. ++..++.+
T Consensus 1265 Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999998765543 336778889999999999999999999875 3333 344565555555544 44556666
Q ss_pred HHHHHhccCC-----CCCchHHHHHHHHhhcCCcHHHHH
Q 006705 453 VGQRLMEIEP-----ENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 453 ~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
.+..-..+.| .+...|.-++-+|.+.|.|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666666655 466789999999999999999985
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=6.8e-15 Score=143.91 Aligned_cols=267 Identities=8% Similarity=-0.024 Sum_probs=202.1
Q ss_pred HHhcCCHHHHHHHHccCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHH
Q 006705 204 YAKAGRIHEARGVFECLPERDV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (634)
....|++..|+..++.....++ ...-.+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3446777777777776554332 2334566777777777777765543 1345666777777777777777888
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006705 280 KQVHSHVLRFEI-PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKV 358 (634)
Q Consensus 280 ~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 358 (634)
.+.++.++..+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 888877777653 44566677788889999999999999998 567889999999999999999999999999986
Q ss_pred CCCHHHH---HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHH
Q 006705 359 KPDSVTY---LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAI 433 (634)
Q Consensus 359 ~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 433 (634)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. .. +.+..+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3664311 22334445679999999999999974 3568899999999999999999999999986 22 346778
Q ss_pred HHHHHHHHHhcCCchH-HHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHH
Q 006705 434 LGSLLGACRVHYNVDI-GEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTR 486 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 486 (634)
|..++..+...|+.++ +..+++++.+++|+++. +.+...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHH
Confidence 9999999999999976 57899999999999764 3345555555555544
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.1e-15 Score=155.95 Aligned_cols=217 Identities=10% Similarity=0.016 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHh-------------
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSK------------- 338 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~------------- 338 (634)
+.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444555555444433 33344444555555555555555555554431 1 23333333333321
Q ss_pred ------cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh--HHHHHHHHH-H
Q 006705 339 ------HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI--EHYGCVVDM-L 409 (634)
Q Consensus 339 ------~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~li~~-~ 409 (634)
.+..++|+..|++..+. -+.+..++..+...+...|++++|...|+...+. ...|.. ..+..+... +
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 23367788888888775 2344567788888999999999999999998864 222221 123333332 3
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHH
Q 006705 410 GRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
...|+.++|+..|.+. .+.|+...+...+ ..+..++++.++.+|+++.+|..|+.+|...|++++|.+.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999999875 5556654443333 34456777888899999999999999999999999999999
Q ss_pred HHHhhCCCccCCceeEE
Q 006705 489 ELMKEKAVTKDPGRSWI 505 (634)
Q Consensus 489 ~~m~~~~~~~~~~~s~~ 505 (634)
++..+.+-..+...+|+
T Consensus 454 ~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----------------
T ss_pred HHHHhcCCCCCcHhhcC
Confidence 99988765444445564
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.3e-15 Score=152.50 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=63.2
Q ss_pred ccchhhhcccchhhhhcCCCCCCCChhhHHHhhhcCcHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHH
Q 006705 5 KKQSRAFSSLTFTQQQLTVPSFPPNPQNLKTLCSNGQLTKALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHM 84 (634)
Q Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 84 (634)
|+.++|.+.++.... ...|..+..++.+.|+..++.+...+ .+|..+|..++.+|...|++++|...+...
T Consensus 17 ~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 17 GNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555555555421 13555556666666655544333332 245556666666666666666666655555
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 006705 85 IKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164 (634)
Q Consensus 85 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 164 (634)
.+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 443 33455566666666666666666655542 55556666666666666666666666654 24556
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 006705 165 VLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 244 (634)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 244 (634)
+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 666666666666666665554 245566666666666666666655555443 2333333455566666666666
Q ss_pred HHHHHHHhh
Q 006705 245 IELFRKLQV 253 (634)
Q Consensus 245 ~~~~~~m~~ 253 (634)
+.+++....
T Consensus 227 i~lLe~aL~ 235 (449)
T 1b89_A 227 ITMLEAALG 235 (449)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 666655543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.7e-15 Score=150.91 Aligned_cols=258 Identities=10% Similarity=-0.038 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYS 306 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 306 (634)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444444455555555555555544432 2233344444444555555555555555554443 334445555555555
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSE--R-TVISWNAM--------------LV-GYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
+.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|++.++++.+. .+.+..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 55555555555555432 1 22222222 22 367778899999999998876 34467888888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999998864 2446788999999999999999999999886 22 3467788899999999999
Q ss_pred chHHHHHHHHHhccCCC------------CCchHHHHHHHHhhcCCcHHHHHHHHHH
Q 006705 447 VDIGEFVGQRLMEIEPE------------NAGNYVILSNLYASAGRWEDVTRVRELM 491 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 491 (634)
+++|...++++.+..|. ++..+..++.+|.+.|++++|.++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6788999999999999999999988754
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=7.6e-13 Score=147.34 Aligned_cols=379 Identities=11% Similarity=0.022 Sum_probs=290.8
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChHHHHHHHhhcCC-CC-----cchHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCY--RPPVYLRTRLIVFYNKCECLSDARKMFDEMRE-RN-----VVSWT 128 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-----~~~~~ 128 (634)
|...|..++.- +-+.=+++.++.....+ ..++.--...+..|...|...+|.+++++..- ++ ...-|
T Consensus 952 d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 952 DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 55555555521 12333455555554442 22344446778899999999999999998763 22 34566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG 208 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 208 (634)
.++....+. +..+..+...+.-. ....-+...|...|.+++|..+|++.. ......+.++ -..|
T Consensus 1027 lLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~ 1090 (1630)
T 1xi4_A 1027 LLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIG 1090 (1630)
T ss_pred HHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHh
Confidence 677777776 55666666665532 223446777889999999999998852 1222223333 2788
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 209 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+
T Consensus 1091 nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1091 NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999874 4678999999999999999999999663 4677888999999999999999999998887
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 289 FEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 289 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
.. +++.+.+.++.+|+|.+++++..... ..++...|..+...|...|++++|..+|... ..|..+
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rL 1227 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRL 1227 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHH
Confidence 65 44444556999999999999655443 4567778888999999999999999999875 268999
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCch
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 448 (634)
..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|........ .+...+..++..|...|.++
T Consensus 1228 A~tLvkLge~q~AIEaarKA~--------n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHhC--------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998763 56899999999999999999999887643 34556678999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhc--CCcHHHHHHHH
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASA--GRWEDVTRVRE 489 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 489 (634)
+|..+++..++++|.+...|.-|..+|++- ++..++.+.|.
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999998888888888888765 45555655555
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=176.30 Aligned_cols=130 Identities=8% Similarity=0.038 Sum_probs=118.0
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMR-------ERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFAT 164 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 164 (634)
-..+||+||++|+++|++++|.++|++|. .||++|||+||++|++.|+.++|+++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 165 VLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 165 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999998888776666666655553
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=176.03 Aligned_cols=132 Identities=12% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS-------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV 363 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~ 363 (634)
...-..+||+||++|+++|++++|.++|+.|. .||++|||+||.||++.|+.++|.++|++|.+. |+.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHH
Confidence 34456789999999999999999999997653 579999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhccCcH-HHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 364 TYLAVLSGCSHGGME-DRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 364 t~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
||+++|.++++.|.. ++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999998874 7888999999987 99999999999998887776555555554443
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.2e-14 Score=144.71 Aligned_cols=264 Identities=11% Similarity=-0.009 Sum_probs=161.9
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 006705 124 VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDM 203 (634)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 203 (634)
...|..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------- 89 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI--------- 89 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH---------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCH---------
Confidence 3445555666666666666666666665532 1233444445555555555555555555555442 2233
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChh-hHHHH-------------HH-
Q 006705 204 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYV-TYASV-------------LT- 268 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-------------l~- 268 (634)
.+|..+...|...|++++|++.|+++.... |+.. .+..+ ..
T Consensus 90 ----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 90 ----------------------AVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred ----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 344444555555555555555555554431 2211 11111 02
Q ss_pred -HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHH
Q 006705 269 -ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 269 -~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 344 (634)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2566777777777777777664 3456777777778888888888888877664 2356677788888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---------cCChHHHHHHHHHHHHcCCH
Q 006705 345 VVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---------EPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---------~p~~~~~~~li~~~~~~g~~ 415 (634)
|++.|+++.+. .+.+..++..+...+...|++++|...++.+.+..+.. ..+...|..+..+|.+.|++
T Consensus 225 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 88888887765 23456677777778888888888888888777532110 00366777788888888888
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.7e-13 Score=133.87 Aligned_cols=243 Identities=8% Similarity=-0.024 Sum_probs=185.4
Q ss_pred HHcCCChHHHHHHHhhcCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHH
Q 006705 103 YNKCECLSDARKMFDEMRERNV----VSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELG 178 (634)
Q Consensus 103 y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (634)
....|.+..|+..++.....+. ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456899999999987765332 34456778999999999999866542 355677888888889999999999
Q ss_pred HHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q 006705 179 KQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI 257 (634)
Q Consensus 179 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 257 (634)
.+.++.+++.+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 999999988764 44567777888999999999999999998 4678899999999999999999999999998863
Q ss_pred cChhhHHHHH----HHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHH
Q 006705 258 SNYVTYASVL----TALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWN 330 (634)
Q Consensus 258 p~~~t~~~ll----~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~ 330 (634)
|+.. ...+. ..+...|++++|..++..+.+.. +.+..+++.+..+|.+.|++++|...|++..+ .+..+|.
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5543 22222 33334578888888888888773 56777777777788888888888887777552 3566777
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHHc
Q 006705 331 AMLVGYSKHGMGRE-VVELFNLMREE 355 (634)
Q Consensus 331 ~li~~~~~~g~~~~-A~~~~~~m~~~ 355 (634)
.++..+...|+.++ +.++++++.+.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777777777765 45677777654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=1.5e-13 Score=144.66 Aligned_cols=381 Identities=10% Similarity=-0.047 Sum_probs=225.5
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC------
Q 006705 56 MRFEEYDTLLNACVNQRTLRGGQRVHAHMIKT-----C---YRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE------ 121 (634)
Q Consensus 56 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------ 121 (634)
.....|+.+-..+...|+.++|.+.++..++. + .+....+|+.+...|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556888888888899999999998877653 1 122345678888889999999999888876532
Q ss_pred ----C-CcchHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HhccCCcHHHHHHHHHHHHhCC
Q 006705 122 ----R-NVVSWTAMISAYSQ--KAHSFEALNLFIRMLRSDTEPNE-FTFATVLTS---CAGAFGFELGKQIHSLIIKSNF 190 (634)
Q Consensus 122 ----~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~ 190 (634)
+ ...+++.+..++.. .+++++|+..|++.... .|+. ..+..+..+ +...++.++|.+.+..+++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 23455555555554 35688999999988774 4543 333333333 345677788888888888765
Q ss_pred CCchHHHHHHHHHHHhc----CCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh-hh
Q 006705 191 ESHIYVGSSLLDMYAKA----GRIHEARGVFECLP---ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY-VT 262 (634)
Q Consensus 191 ~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 262 (634)
+.+..++..+...+... |+.++|.+.|++.. ..+..+|+.+...|...|++++|+..|.+..+. .|+. .+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 44556666565555543 56778888887653 346677888888899999999999999888775 3443 34
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKH 339 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 339 (634)
+..+...+...+.... ... ...........+..+.|...|++.. ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 4444333322111000 000 0001111112234567777777654 34667889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSV--TYLAVLS-GCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
|++++|++.|++..+. ...|... .+..+.. .....|+.++|+..|.+..+. .|+........ +
T Consensus 348 ~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i----~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI----NQKSREKEKMK---------D 413 (472)
T ss_dssp TCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS----CCCCHHHHHHH---------H
T ss_pred ccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CcccHHHHHHH---------H
Confidence 9999999999998876 3333221 2222222 245789999999999998853 45543332222 2
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 417 EALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 417 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+.+++++. ..+.+..+|..|...+...|++++|...++++++++|.+|.++.-+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 233333332 1234667899999999999999999999999999999877665544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-13 Score=129.10 Aligned_cols=225 Identities=10% Similarity=-0.024 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666666554 444445555555555555555555544443321000
Q ss_pred HhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006705 306 SKCGSLTYSRRVFDNMSERT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 381 (634)
.++ ...|..+...|...|++++|++.|++..+. .|+. ..+...|++++|
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHH
Confidence 011 456777788888888888888888888775 3453 235556788889
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
...++.+... .+.+...+..+...|.+.|++++|...+++. ..+.+..+|..+...+...|++++|...++++++
T Consensus 125 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9888888863 2345677888888899999999999998886 2234677888888999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 460 IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 460 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..|+++..|..++.+|.+.|++++|.+.++...+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998899999999999999999999999988654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.9e-13 Score=130.83 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--cC----hhhHHH
Q 006705 194 IYVGSSLLDMYAKAGRIHEARGVFECLPE--RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI--SN----YVTYAS 265 (634)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~ 265 (634)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|.+..+.... |+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999986532 67889999999999999999999999998864211 12 356666
Q ss_pred HHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCh
Q 006705 266 VLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMG 342 (634)
Q Consensus 266 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 342 (634)
+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6677777777777777777776653 22 12344445555555555544321 233444445555555555
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHH
Q 006705 343 REVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFI 422 (634)
Q Consensus 343 ~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 422 (634)
++|+..|++..+. .+.+..++..+..++...|++++|...++.+.+.. +.+...|..+...|.+.|++++|.+.+
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555443 12233444444444555555555555555544321 222344444444444444444444444
Q ss_pred Hh
Q 006705 423 KN 424 (634)
Q Consensus 423 ~~ 424 (634)
++
T Consensus 231 ~~ 232 (258)
T 3uq3_A 231 DA 232 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=2.5e-13 Score=126.62 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=154.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAV 368 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~l 368 (634)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. -+.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888889999999999999988653 36778888999999999999999999999876 23345778888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 006705 369 LSGCSHG-----------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGS 436 (634)
Q Consensus 369 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 436 (634)
..++... |++++|...++...+.. +-+...+..+...|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 99999999999998642 335788999999999999999999999986 11168889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+..++...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=2.9e-12 Score=133.64 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=124.0
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh---HHHHHHHhhcCCCCcchHHHHHHHHHhCC--
Q 006705 64 LLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECL---SDARKMFDEMRERNVVSWTAMISAYSQKA-- 138 (634)
Q Consensus 64 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 138 (634)
+...+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555667889999999999998886 344555666777777887 89999998887777778888887666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC----
Q 006705 139 ---HSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF---ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAG---- 208 (634)
Q Consensus 139 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 208 (634)
++++|+..|++....|.. ..+..+...+...+.. ..+.+.+....+.| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 778999999999887643 2555555555544433 33444555555444 3445566777777777
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc----cchHHHHH
Q 006705 209 RIHEARGVFECLPERDVVSCTAIISGYAQLG---LDEEAIELFRKLQVEGMISNYVTYASVLTALSGL----AALGHGKQ 281 (634)
Q Consensus 209 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~ 281 (634)
..+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+-..|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666677766667778888888888888 7888888888887766 33443333444444332 45555555
Q ss_pred HHHHHH
Q 006705 282 VHSHVL 287 (634)
Q Consensus 282 i~~~~~ 287 (634)
.+....
T Consensus 239 ~~~~aa 244 (452)
T 3e4b_A 239 LLEKIA 244 (452)
T ss_dssp HHHHHG
T ss_pred HHHHHc
Confidence 555554
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=7.5e-13 Score=128.11 Aligned_cols=241 Identities=10% Similarity=-0.050 Sum_probs=175.1
Q ss_pred hcCChHHHHHHHHHHhhcCC---ccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGM---ISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTY 313 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 313 (634)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776421 1134556666777777777777777777777764 4467777888888888888888
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 314 SRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 314 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
|...|++..+ .+...|..+...|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888887663 36778888888899999999999999988875 35554444455556677899999999987776
Q ss_pred ccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 391 CKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 391 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
. .+++...+. ++..+...++.++|.+.+.+. ...|+ ...|..+...+...|++++|...++++.+..|++
T Consensus 173 ~---~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 K---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp H---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred c---CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 234444443 677777788888899888876 22222 4678888899999999999999999999999876
Q ss_pred CchHHHHHHHHhhcCCcHHHHHHH
Q 006705 465 AGNYVILSNLYASAGRWEDVTRVR 488 (634)
Q Consensus 465 ~~~~~~l~~~~~~~g~~~~A~~~~ 488 (634)
... ...++...|++++|.+.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 443 466777888888887765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=1.9e-12 Score=125.17 Aligned_cols=239 Identities=10% Similarity=-0.002 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccCh--hhHHHHHHHHhcc
Q 006705 199 SLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNY--VTYASVLTALSGL 273 (634)
Q Consensus 199 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~ 273 (634)
.....|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..-.|+. ..|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 345556666666666666665432 23445666666666666666666666666552211111 1244455555555
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFN 350 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (634)
|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.|+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 22334444455555555555555555544442 123333333312222234444444444
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC---HHHHHHHHHhC--
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR---VGEALEFIKNM-- 425 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 425 (634)
+..+. .| .+...+..+...+...|+ +++|...+++.
T Consensus 167 ~a~~~---~p------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 167 KVLEL---KP------------------------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHH---ST------------------------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHh---Cc------------------------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44433 11 123344444444444444 33344333332
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 426 --PFEPT------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 426 --~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
...|+ ..+|..+...+...|+++.|...++++++++|+++.+...+..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 00122 13555666777777788888888888888888876666655555443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=6.3e-12 Score=119.93 Aligned_cols=196 Identities=7% Similarity=-0.088 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4556667777777778777777777664 235667777788888888888888888887775 23456677777778
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCch
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVD 448 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~ 448 (634)
+...|++++|..+++.+.+. +..| +...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887752 3344 4667777888888888888888888775 2 1335677778888888888888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 449 IGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|...++++.+..|.+...+..++.+|...|++++|.+.++.+.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.3e-12 Score=122.12 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
.+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc
Confidence 33334444444444444444332 123445555555555666666666666665554 2334455555555566666
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ..+.+..+|..+...+...|++++|...+
T Consensus 140 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 140 QPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666666666665542 1234555566666666666666666666554 11234555666666666666666666666
Q ss_pred HHHhccCCCCCchHHHHHHH
Q 006705 455 QRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~ 474 (634)
+++.++.|+++..+..+..+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 66666666655554444333
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=5.2e-12 Score=122.11 Aligned_cols=239 Identities=12% Similarity=-0.084 Sum_probs=154.2
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-ChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 006705 136 QKAHSFEALNLFIRMLRSDTE--P-NEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHE 212 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 212 (634)
..|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764321 1 34456666677777777777777777777764 4456777778888888888888
Q ss_pred HHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc
Q 006705 213 ARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF 289 (634)
Q Consensus 213 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 289 (634)
|.+.|++... .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876543 35677888888888888888888888888764 455544444555556667888888888776665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 006705 290 EIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERT-------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
. +++...+. ++..+...++.++|...+.+....+ ...|..+...|.+.|++++|...|++.... .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 4 33333333 5666666677777777777666432 356666777777777777777777776653 3422
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHH
Q 006705 363 -VTYLAVLSGCSHGGMEDRGLAVF 385 (634)
Q Consensus 363 -~t~~~ll~a~~~~g~~~~a~~~~ 385 (634)
..+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 222 33444555555555443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.1e-11 Score=115.75 Aligned_cols=197 Identities=8% Similarity=0.002 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 44556666667777777777777776654 234567777777777777777777777777765 2335566777777
Q ss_pred HHhcc-CcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 371 GCSHG-GMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 371 a~~~~-g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
.+... |++++|...++.+.+. +..| +...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 77777 7888888877777752 2333 3566777777777888888887777765 11 2346677777777778888
Q ss_pred chHHHHHHHHHhccCC-CCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 447 VDIGEFVGQRLMEIEP-ENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+++|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888877777 77777777777777888888888877777543
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.2e-09 Score=117.95 Aligned_cols=423 Identities=10% Similarity=0.026 Sum_probs=286.4
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCC---hHHHHHHHhhcC
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCEC---LSDARKMFDEMR 120 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~~~ 120 (634)
..|++-..... -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|. ++.+..+|++..
T Consensus 53 ~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 53 GKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34555555543 48899999999999999999999999999987 46677888999998888888 999999999875
Q ss_pred C-----CCcchHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc---------cCCc
Q 006705 121 E-----RNVVSWTAMISAYSQKAHS--------FEALNLFIRMLR-SDT-EPNE-FTFATVLTSCAG---------AFGF 175 (634)
Q Consensus 121 ~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~---------~~~~ 175 (634)
. |++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 4 7788898888766555543 234477777654 466 6654 455555544322 2346
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHcc-------CC----C---------
Q 006705 176 ELGKQIHSLIIKSNFESHIYVGSSLLDMYAK-------------AGRIHEARGVFEC-------LP----E--------- 222 (634)
Q Consensus 176 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~-------m~----~--------- 222 (634)
+.++.+|..++......-..+|......--. ..+++.|...+.+ +. .
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 7788888888753211112333221111100 1123334444432 11 0
Q ss_pred -C--C------hhhHHHHHHHHHhcCC-------hHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHH-HHHHH
Q 006705 223 -R--D------VVSCTAIISGYAQLGL-------DEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGK-QVHSH 285 (634)
Q Consensus 223 -~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~i~~~ 285 (634)
| + ...|...+.---.++. .+.+..+|++.... .+-+...|.....-+...|+.+.|. .+++.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0 0 1346666654333321 23455678877765 3445666767777777788888996 99999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhhHHHHHHHHHhcC
Q 006705 286 VLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-------------RT------------VISWNAMLVGYSKHG 340 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~~~g 340 (634)
.+.. .|.+..++-.++....+.|+++.|.++|+++.+ |+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 9875 356777788889999999999999999998763 21 236888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 341 MGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 341 ~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
..+.|..+|.+..+. -..+....|......-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+.|.
T Consensus 449 ~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 449 GLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp CHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999998874 111222333322222222 35689999999999874 3456777888899888999999999
Q ss_pred HHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 420 EFIKNM-PFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 420 ~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
.+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 999986 2223 346889999999999999999999999999999863 334444444
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=6.2e-12 Score=117.14 Aligned_cols=193 Identities=12% Similarity=-0.006 Sum_probs=104.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLD 202 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 202 (634)
+...|..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666666677777777666666532 1244555556666666666666666666666654 344555666666
Q ss_pred HHHhc-----------CCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHH
Q 006705 203 MYAKA-----------GRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLT 268 (634)
Q Consensus 203 ~y~~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 268 (634)
.|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655432 234455556666666666666666666665554 44455555555
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 269 ALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 269 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
++...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555543 33444455555555555555555555543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=1.7e-11 Score=116.93 Aligned_cols=205 Identities=13% Similarity=-0.001 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDM 304 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 304 (634)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4567777788888888888888888877653 2234455555555555555555555555555443 22
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
+...|..+...|...|++++|++.|+++.+. +..|+ ...+..+...+...|++++|..
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344445555555555555555555555542 23332 3445555555566666666666
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
.++.+.+.. +.+...+..+...|.+.|++++|...++++ . .+.+...+..+...+...|+.+.|...++++.+..
T Consensus 163 ~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRLN---RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 666655421 223555666666666666666666666654 1 12344555566666666666777776666766666
Q ss_pred CCCCc
Q 006705 462 PENAG 466 (634)
Q Consensus 462 p~~~~ 466 (634)
|+++.
T Consensus 240 p~~~~ 244 (252)
T 2ho1_A 240 PGSLE 244 (252)
T ss_dssp TTSHH
T ss_pred CCCHH
Confidence 66543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=2e-11 Score=117.87 Aligned_cols=229 Identities=8% Similarity=-0.041 Sum_probs=180.8
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC--CCh----hhHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE--RDV----VSCTAII 232 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~~li 232 (634)
...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|++... ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455666778889999999999999999875 44566888899999999999999999987654 222 2488999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 006705 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLI-DMYSKCGSL 311 (634)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 311 (634)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 3455788899999999999999999999998874 55677777777 5555 4699
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHhccCcHH
Q 006705 312 TYSRRVFDNMSE---RTVISWNAMLVGYSKHGM---GREVVELFNLMREENKVKPDS------VTYLAVLSGCSHGGMED 379 (634)
Q Consensus 312 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~pd~------~t~~~ll~a~~~~g~~~ 379 (634)
++|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+...-.|+. .+|..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998763 356778888888888888 888999998887652223442 45666667777778888
Q ss_pred HHHHHHHHhhhc
Q 006705 380 RGLAVFHEIVDC 391 (634)
Q Consensus 380 ~a~~~~~~~~~~ 391 (634)
+|...++.+.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888777753
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=3.3e-12 Score=121.00 Aligned_cols=197 Identities=11% Similarity=0.012 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .+.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3455667778888899999999999988753 36788999999999999999999999999886 344678888899
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~ 447 (634)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999874 2457888999999999999999999999986 2 234678889999999999999
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++.+..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999764
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=5.9e-11 Score=114.82 Aligned_cols=225 Identities=10% Similarity=-0.065 Sum_probs=132.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCchhHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSG----LAALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455555555666666666666666655522 23344444445555 555556665555555544 444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 300 SLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAMLVGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 300 ~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+. + +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 55556666 6666666666665443 245566666666666 67777777777776665 3 3445555555
Q ss_pred HHhc----cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006705 371 GCSH----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACR 442 (634)
Q Consensus 371 a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 442 (634)
.+.. .+++++|...|+...+. + +...+..+..+|.+ .+++++|++.+++.-...+...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555 66777777777776653 2 34566666666766 6777777777666411123455555556666
Q ss_pred h----cCCchHHHHHHHHHhccCCC
Q 006705 443 V----HYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 443 ~----~~~~~~a~~~~~~~~~~~p~ 463 (634)
. .+++++|...++++.+.+|+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 5 66666666666666666654
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=2.5e-11 Score=113.20 Aligned_cols=209 Identities=11% Similarity=-0.037 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 224 DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 224 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 34566666777777777777777777766542 2223344444444444444444444444444332
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH-GMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRG 381 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 381 (634)
..+...|..+...|... |++++|+..|+++.+. +..|+ ...+..+..++...|++++|
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 12445566666666667 7777777777776653 33343 35566666677777777777
Q ss_pred HHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 006705 382 LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-E-PTAAILGSLLGACRVHYNVDIGEFVGQRLM 458 (634)
Q Consensus 382 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 458 (634)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. + .+...+..+...+...|+.+.+...++.+.
T Consensus 133 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7777777653 1234666777777777777777777777765 11 2 355566666666777777777777777777
Q ss_pred ccCCCCCchHH
Q 006705 459 EIEPENAGNYV 469 (634)
Q Consensus 459 ~~~p~~~~~~~ 469 (634)
+..|+++....
T Consensus 210 ~~~p~~~~~~~ 220 (225)
T 2vq2_A 210 ANFPYSEELQT 220 (225)
T ss_dssp HHCTTCHHHHH
T ss_pred HhCCCCHHHHH
Confidence 77777655443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.9e-11 Score=127.43 Aligned_cols=186 Identities=8% Similarity=-0.064 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhhHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 297 LQNSLIDMYSKCG---SLTYSRRVFDNMSE---RTVISWNAMLVGYSKH----GMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 297 ~~~~li~~~~~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
.+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|++.|++.. . | +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-G---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-G---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-C---CHHHHH
Confidence 5566666666666 66666666665542 2333334555555443 57788888888776 4 3 233344
Q ss_pred HHHHH-H--hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 367 AVLSG-C--SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-----RVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 367 ~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
.+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|.+.|++.. ..+...+..|.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHH
Confidence 44433 2 4578888888888888764 4 6667777777777 45 8889999998887 66777777777
Q ss_pred HHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 439 GACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 439 ~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
..|.. ..+.++|...++++.+.+ ++.....|+.+|.. ..+.++|...++...+.|.
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 66665 348888998888887754 45778888888875 3588899999999887764
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.7e-11 Score=123.90 Aligned_cols=246 Identities=10% Similarity=0.058 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006705 225 VVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-LGHGKQVHSHVLRFEIPSYVVLQNSLID 303 (634)
Q Consensus 225 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~ 303 (634)
...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467777777788888888888888887653 2234556667777777775 888888888777765 456777788888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCcHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH-GGMED 379 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~-~g~~~ 379 (634)
+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|++.|+++.+. -+-+...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888887762 46778888888888888888888888888875 23355777777777777 55546
Q ss_pred HH-----HHHHHHhhhccCCccCChHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 006705 380 RG-----LAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG--RVGEALEFIKNMPFEP-TAAILGSLLGACRVHY------ 445 (634)
Q Consensus 380 ~a-----~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~------ 445 (634)
+| +..++..++.. +-+...|+.+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~---P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV---PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777531 235667888888888777 5788888877763333 4566777777777653
Q ss_pred ---CchHHHHHHHHH-hccCCCCCchHHHHHHHHhh
Q 006705 446 ---NVDIGEFVGQRL-MEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 446 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 477 (634)
..++|..+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 247788888888 88888877777766665543
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=8e-11 Score=113.84 Aligned_cols=224 Identities=7% Similarity=-0.073 Sum_probs=194.5
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK----CGSLTYSRRVFDNMSE-RTVISWNAML 333 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li 333 (634)
+..++..+-..+...+++++|...+....+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456677777888899999999999999983 456778889999999 9999999999998764 4778899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 334 VGYSK----HGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH----GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 334 ~~~~~----~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
..|.. .+++++|++.|++..+. + +...+..+...+.. .+++++|...|+...+. + +...+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 152 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--N---DGDGCTIL 152 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--C---cHHHHHHH
Confidence 99999 99999999999999887 4 67788888888888 99999999999999875 4 57788889
Q ss_pred HHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchHHHHHHHHhh
Q 006705 406 VDMLGR----AGRVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNYVILSNLYAS 477 (634)
Q Consensus 406 i~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 477 (634)
...|.. .+++++|...+++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..|+.+|.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 999998 99999999999987323467788888899999 9999999999999999877 5788999999999
Q ss_pred ----cCCcHHHHHHHHHHhhCCC
Q 006705 478 ----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 478 ----~g~~~~A~~~~~~m~~~~~ 496 (634)
.|++++|.+.+++..+.|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=2.4e-11 Score=122.87 Aligned_cols=227 Identities=9% Similarity=0.006 Sum_probs=192.6
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHH
Q 006705 261 VTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGS-LTYSRRVFDNMSE---RTVISWNAMLVGY 336 (634)
Q Consensus 261 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~ 336 (634)
..|..+...+...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999886 5678899999999999997 9999999998873 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH-cCCH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR-AGRV 415 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 415 (634)
...|++++|+..|+++.+. -+-+...|..+..++...|++++|+..++.+++.. +-+...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999986 34466889999999999999999999999999642 3468899999999999 6776
Q ss_pred HHH-----HHHHHhC-CCC-CCHHHHHHHHHHHHhcC--CchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC-------
Q 006705 416 GEA-----LEFIKNM-PFE-PTAAILGSLLGACRVHY--NVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG------- 479 (634)
Q Consensus 416 ~~A-----~~~~~~m-~~~-p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 479 (634)
++| ++.|++. ... .+...|..+...+...| ++++|...+.++ +.+|+++..+..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 223 46778999999898888 689999999888 899999899999999999875
Q ss_pred --CcHHHHHHHHHH-hhC
Q 006705 480 --RWEDVTRVRELM-KEK 494 (634)
Q Consensus 480 --~~~~A~~~~~~m-~~~ 494 (634)
.+++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1e-11 Score=127.97 Aligned_cols=265 Identities=12% Similarity=-0.016 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--C-Ch----hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHH
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE--R-DV----VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA 269 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 269 (634)
+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+..-.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------ 118 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS------------ 118 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------
Confidence 33445556666666666666655432 1 22 24555566666666666666666655432000
Q ss_pred HhcccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHhc
Q 006705 270 LSGLAALGHGKQVHSHVLRFE-IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---------RTVISWNAMLVGYSKH 339 (634)
Q Consensus 270 ~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~ 339 (634)
.+ .+....++..+...|...|++++|...|++..+ ....+|..+...|...
T Consensus 119 -------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 119 -------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00 011223334444444444555444444443321 0123455555556666
Q ss_pred CC-----------------hHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC
Q 006705 340 GM-----------------GREVVELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE 398 (634)
Q Consensus 340 g~-----------------~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~ 398 (634)
|+ +++|++.+++..+.. +..|. ..++..+...+...|++++|...++...+.. .-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 258 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGD 258 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCC
Confidence 66 666666655543310 11111 2355566666777777777777777666431 00111
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--
Q 006705 399 ----IEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-- 464 (634)
Q Consensus 399 ----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-- 464 (634)
...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...+++++++.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 235667777777777777777777654 10111 3456666777777888888877777777654332
Q ss_pred ----CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 465 ----AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 465 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34777899999999999999999988864
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=6.7e-11 Score=106.80 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=120.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...|.+.|++++|++.|++..+. -+-+..++..+..++...|++++|...+...... .+.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4456677777777777777777777777665 2234466677777777777777777777777653 2334566666
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
+...+...+++++|.+.+.+. . .+.+...|..+...+...|++++|...++++++++|.++.+|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777777778888877777765 1 23456677777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhC
Q 006705 483 DVTRVRELMKEK 494 (634)
Q Consensus 483 ~A~~~~~~m~~~ 494 (634)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888887654
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=2.3e-11 Score=124.79 Aligned_cols=196 Identities=11% Similarity=-0.000 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM--------------------GREVVE 347 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 347 (634)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554432 11 2355666666666666 677777
Q ss_pred HHHHHHHc---CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHH
Q 006705 348 LFNLMREE---NKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 348 ~~~~m~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 419 (634)
.+++.... .+..|. ..++..+...+...|++++|...++...+.. .-.++ ...+..+...|...|++++|.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 66654431 011121 2456666777777888888888887776532 11111 336777788888888888888
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHHH
Q 006705 420 EFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 420 ~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 485 (634)
..+++. +..++ ..++..+...+...|++++|...++++.++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887765 11112 4466677788888888888888888877664432 446778889999999999999
Q ss_pred HHHHHHhh
Q 006705 486 RVRELMKE 493 (634)
Q Consensus 486 ~~~~~m~~ 493 (634)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=3.8e-11 Score=119.37 Aligned_cols=198 Identities=12% Similarity=-0.000 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM--------------------GREVV 346 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 346 (634)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3445555556666666666665555431 11 2356666666777777 77777
Q ss_pred HHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC----ChHHHHHHHHHHHHcCCHHHH
Q 006705 347 ELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP----EIEHYGCVVDMLGRAGRVGEA 418 (634)
Q Consensus 347 ~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A 418 (634)
+.+++..... +..|. ..++..+...+...|++++|...++...+.. .-.+ ....+..+...|.+.|++++|
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7776654310 11111 2456666777788888888888888776432 1111 133677788888888888888
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHH
Q 006705 419 LEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 419 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 484 (634)
...+++. +..++ ..++..+...+...|++++|...++++.++.|.. ...+..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888765 11122 4466777788888899999988888887764432 33677899999999999999
Q ss_pred HHHHHHHhhC
Q 006705 485 TRVRELMKEK 494 (634)
Q Consensus 485 ~~~~~~m~~~ 494 (634)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=4.6e-11 Score=123.04 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+.. ......+..+...|.+.|++++|.+.+++. +..++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 44445555555555555555555544321000 011345555666666666666666665554 00011 23
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
++..+...+...|++++|...++++.++.+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 455555666666777777777666666554
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=9.4e-11 Score=120.21 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccC--Cc-cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GF-EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+ +. .....++..+...|.+.|++++|.+.+++. +..++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444445555555555555554443210 00 001344555555555555555555555543 00111 33
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhccCCC------CCchHHHHHHHHhhcCCc
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------NAGNYVILSNLYASAGRW 481 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~ 481 (634)
++..+...+...|++++|...++++.++.+. ...++..++.+|...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4455556666666666666666665544221 234556677777666654
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=6.9e-09 Score=112.00 Aligned_cols=417 Identities=9% Similarity=0.006 Sum_probs=286.9
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCC---hhHHHHHH
Q 006705 74 LRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--R-NVVSWTAMISAYSQKAH---SFEALNLF 147 (634)
Q Consensus 74 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~ 147 (634)
...-...++..+..+ +.|...|..++..+.+.+.++.|+.+|+.+.. | +...|...+..-.+.|. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455566666665 57899999999999999999999999998876 3 55678888888888898 99999999
Q ss_pred HHHHHCC-CCCChhhHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CCc-hHHHHHHHHHHH---------h
Q 006705 148 IRMLRSD-TEPNEFTFATVLTSCAGAFGF--------ELGKQIHSLIIK-SNF-ESH-IYVGSSLLDMYA---------K 206 (634)
Q Consensus 148 ~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~ 206 (634)
++.+... ..|+...|..-+.-....++. +...++|+.++. .|. .++ ..+|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998763 247877777766655554443 334577877665 365 454 467877776543 2
Q ss_pred cCCHHHHHHHHccCCC-C--Ch-hhHH---HHHHHHH----------hcCChHHHHHHHHHHhhc--CCc----------
Q 006705 207 AGRIHEARGVFECLPE-R--DV-VSCT---AIISGYA----------QLGLDEEAIELFRKLQVE--GMI---------- 257 (634)
Q Consensus 207 ~g~~~~A~~~~~~m~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---------- 257 (634)
.++++.+.++|+.... | +. ..|. .+...+. ....++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 4467889999988764 2 11 2332 2222110 011234445555543221 111
Q ss_pred -----c--C---h---hhHHHHHHHHhccc-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-H
Q 006705 258 -----S--N---Y---VTYASVLTALSGLA-------ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSR-R 316 (634)
Q Consensus 258 -----p--~---~---~t~~~ll~~~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~ 316 (634)
| + . ..|...+.---..+ ..+....+|++++.. ++.+..+|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 0 11222222111111 123345678877776 3567888888888888999999996 9
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCCC------------HHHHHHHHHHH
Q 006705 317 VFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENK---------VKPD------------SVTYLAVLSGC 372 (634)
Q Consensus 317 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g---------~~pd------------~~t~~~ll~a~ 372 (634)
+|++... ++...|-..+...-+.|++++|.++|+++... . -.|+ ...|...+...
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~-l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR-IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 9988763 35667888888899999999999999998763 1 0142 23577777777
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
.+.|.++.|..+|..+.+. .-.+....|...+.+-.+.+ +.+.|.++|+.. ..+.+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~--~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRL--KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHT--GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 7889999999999999864 12234455655555555555 489999999876 233467778888888888999999
Q ss_pred HHHHHHHHhccCCC---CCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 450 GEFVGQRLMEIEPE---NAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 450 a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
|..+++++....|+ ....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999998873 34567788888889999999999999998763
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=1.2e-11 Score=129.94 Aligned_cols=209 Identities=8% Similarity=-0.078 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSL-TYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 34667777777888888888 888888887652 3577889999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc--------CC
Q 006705 352 MREENKVKPDSVTYLAVLSGCSHG---------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--------GR 414 (634)
Q Consensus 352 m~~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~ 414 (634)
..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |+
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8865 57788888888889998 99999999999998642 34578899999999998 99
Q ss_pred HHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 415 VGEALEFIKNM-PFEP----TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 415 ~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
+++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 3344 788899999999999999999999999999999999999999999999999999987554
Q ss_pred HH
Q 006705 490 LM 491 (634)
Q Consensus 490 ~m 491 (634)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 33
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=5.5e-11 Score=118.18 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhccCCcHHHHHHHHHHH
Q 006705 127 WTAMISAYSQKAHSFEALNLFIRMLRSDTEPN-----EFTFATVLTSCAGAFGFELGKQIHSLII 186 (634)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (634)
+......+...|++++|+..|++..... |+ ...+..+...+...|+++.|...+..++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455666666666666666665532 22 1334444555555555555555555543
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=6e-10 Score=109.80 Aligned_cols=218 Identities=8% Similarity=0.004 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHh-------cccch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALS-------GLAAL-------GHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776542 223344555544443 24664 7788888877773224456678888888888
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE--R-TVI-SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC-SHGGMEDRGL 382 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~ 382 (634)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+. .+++...|....... ...|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887664 3 333 7888888888888888888888888765 223344444333332 2368888888
Q ss_pred HHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 383 AVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P---FEP--TAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888887642 336778888888888888888888888876 1 244 456788888888888888888888888
Q ss_pred HhccCCCCC
Q 006705 457 LMEIEPENA 465 (634)
Q Consensus 457 ~~~~~p~~~ 465 (634)
+.+..|++.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 888888754
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=7.4e-11 Score=106.51 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=138.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVL 369 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll 369 (634)
.+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+.... .+.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567788888889999999999999988753 46778888999999999999999999988876 334556677777
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCc
Q 006705 370 SGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 370 ~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 447 (634)
..+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. .. +.+..+|..+..++...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 7888899999999999988864 2446788889999999999999999999886 22 34677889999999999999
Q ss_pred hHHHHHHHHHhccCCCCC
Q 006705 448 DIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~ 465 (634)
++|...++++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999998753
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=4.5e-11 Score=117.67 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCccChhhHHHHHHHHhcccchHHHHHHHHHHHHc------C-C
Q 006705 226 VSCTAIISGYAQLGLDEEAIELFRKLQVE-------GMISNYVTYASVLTALSGLAALGHGKQVHSHVLRF------E-I 291 (634)
Q Consensus 226 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~-~ 291 (634)
.+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666677777777777777666542 11222334444555555555555555555554432 1 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-CHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREEN-----KVKP-DSVTY 365 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----g~~p-d~~t~ 365 (634)
+....++..+...|...|++++|...|+ +..+.. +..| ....+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHHH
Confidence 1223344445555555555555555544 333210 0111 12344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccC-----CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKD-----GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP----------FEPT 430 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~ 430 (634)
..+...+...|++++|..+++.+.+... ..+.....+..+...|.+.|++++|.+.++++- ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 4555555566666666665555543200 011123455556666666666666666665541 0011
Q ss_pred -------HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 431 -------AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 431 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
...+..+...+...+.+..+...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111122223334445555566666666667777778888999999999999999999988754
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.2e-09 Score=111.33 Aligned_cols=233 Identities=6% Similarity=-0.038 Sum_probs=127.2
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE-----R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTAL 270 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 270 (634)
....+...|++++|...|++... + ...+|..+...|...|++++|+..+.+..+.-...+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 44556667777777777765432 1 12456666777777777777777776655421000000
Q ss_pred hcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC
Q 006705 271 SGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGM 341 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~ 341 (634)
.+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000112333444444444444444444443321 11 1245556666666666
Q ss_pred hHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCChHHHHHHHHHHHHcCC-
Q 006705 342 GREVVELFNLMREE---NKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPEIEHYGCVVDMLGRAGR- 414 (634)
Q Consensus 342 ~~~A~~~~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~- 414 (634)
+++|++.|++..+. .+..| ...++..+...+...|++++|...++...+... +-+.....+..+...|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666655541 01212 235566666677777777777777766654310 011112234556666777777
Q ss_pred --HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHhccC
Q 006705 415 --VGEALEFIKNMPFEPTA-AILGSLLGACRVHYNVDIGEFVGQRLMEIE 461 (634)
Q Consensus 415 --~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 461 (634)
+++|+.++++....|+. ..+..+...|...|+++.|...++++.++.
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 77777777777543332 245556677777777777777777776543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=4.6e-10 Score=100.87 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=80.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR 411 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 411 (634)
+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|..
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHH
Confidence 333344444444444444444322 1123333444444444444444444444444432 12234444444555555
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 412 AGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 412 ~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
.|++++|.+.++++ ..+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555443 1123444555555556666666666666666666666666667777777777777777777777
Q ss_pred HHhh
Q 006705 490 LMKE 493 (634)
Q Consensus 490 ~m~~ 493 (634)
...+
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=3e-09 Score=104.79 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCcHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGCSHGGMEDRGL 382 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~ 382 (634)
.|++++|.++|++..+ .+...|..++..+.+.|++++|..+|++......+.|+ ...|..++......|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555432 24455555555566666666666666666553112332 344555555555566666666
Q ss_pred HHHHHhhhc
Q 006705 383 AVFHEIVDC 391 (634)
Q Consensus 383 ~~~~~~~~~ 391 (634)
.+++.+.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=6.1e-10 Score=113.54 Aligned_cols=285 Identities=10% Similarity=-0.002 Sum_probs=146.2
Q ss_pred HhccCCchHHHHHHHHHHHhC--CCCC--hhHHHHHHHHHH--cCCChHHHH-----------HHHhhcCC-C-Ccch--
Q 006705 68 CVNQRTLRGGQRVHAHMIKTC--YRPP--VYLRTRLIVFYN--KCECLSDAR-----------KMFDEMRE-R-NVVS-- 126 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~y~--~~g~~~~A~-----------~~~~~~~~-~-~~~~-- 126 (634)
+.+.++++.|..+.+.+.+.- +..| ...|-.++..-. -.+.++.+. +.++.+.. + +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788999999998887642 2233 233333332211 112233333 44444422 1 1111
Q ss_pred ----HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCC------
Q 006705 127 ----WTAMISAYSQKAHSFEALNLFIRMLRSD-TEPN----EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFE------ 191 (634)
Q Consensus 127 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------ 191 (634)
|......+...|++++|+..|++....- -.|| ..++..+...+...|+++.|...+..+++.--.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1124455667788888888888876531 0122 245666666777777777777777776654211
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHhhc----CC-c
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLDEEAIELFRKLQVE----GM-I 257 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 257 (634)
....+++.+...|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|+..|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1134566666777777777777766655432 11 125666666666777777777666666541 22 2
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHhcCC---HHHHHHHHhhcCCC--Chhh
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRF----EIPSYVVLQNSLIDMYSKCGS---LTYSRRVFDNMSER--TVIS 328 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~--~~~~ 328 (634)
....++..+...+...|++++|...+....+. +-+.....++.+...|...|+ +++|..++++.... ....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 22334555555555666666666655554432 111112223334444444444 44444444444221 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
+..+...|...|++++|.+.|++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444443
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=4.8e-10 Score=122.52 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYG 403 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 403 (634)
..+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...|++..+. .| +...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 345666666666666666666666666654 233 456666666666666666666666666643 23 356666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
.+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..|+.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 6666777777777777666664 2222 4556666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 006705 482 EDVTRVRELMK 492 (634)
Q Consensus 482 ~~A~~~~~~m~ 492 (634)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666553
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.9e-09 Score=96.79 Aligned_cols=168 Identities=10% Similarity=-0.022 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+. .+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 34566778888999999999999999875 36778888999999999999999999999876 34567788888889
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ..+.+...|..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999864 2456788999999999999999999999886 223467788899999999999999
Q ss_pred HHHHHHHHhccCCCCCch
Q 006705 450 GEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~~~ 467 (634)
|...++++.+..|++...
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998886543
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=1.8e-10 Score=113.33 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHh------CC-C
Q 006705 126 SWTAMISAYSQKAHSFEALNLFIRMLRS-------DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKS------NF-E 191 (634)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~ 191 (634)
+|..+...|...|++++|+.+|+++... .......++..+...+...|++++|...+..+++. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555555431 11112233444444455555555555555554433 11 1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhc------
Q 006705 192 SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----------RDVVSCTAIISGYAQLGLDEEAIELFRKLQVE------ 254 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 254 (634)
....++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|++.|++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1234445555555555555555555544321 01234555555556666666666666555442
Q ss_pred CCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHH
Q 006705 255 GMISN-YVTYASVLTALSGLAALGHGKQVHSHVLR 288 (634)
Q Consensus 255 g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 288 (634)
+..|+ ..++..+...+...|++++|...+..+.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 22344444555555555555555555443
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=1.4e-09 Score=113.91 Aligned_cols=211 Identities=10% Similarity=-0.073 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHc
Q 006705 140 SFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGF-ELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFE 218 (634)
Q Consensus 140 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 218 (634)
+++++..+++.... .+.+...+..+...+...|++ ++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555554432 122445555556666666666 66666666666553 3334555555555555555555555555
Q ss_pred cCCC--CChhhHHHHHHHHHhc---------CChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 006705 219 CLPE--RDVVSCTAIISGYAQL---------GLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVL 287 (634)
Q Consensus 219 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 287 (634)
+..+ |+...|..+...|... |++++|+..|++. +
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-----------------------------------l 206 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-----------------------------------V 206 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-----------------------------------H
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-----------------------------------H
Confidence 4422 3334444444444444 4444444444444 4
Q ss_pred HcCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 288 RFEIPSYVVLQNSLIDMYSKC--------GSLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 288 ~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+.. +.+...+..+...|... |++++|...|++..+ .+...|..+...|...|++++|++.|++..
T Consensus 207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 433 23344455555555555 566666666665542 255677777777888888888888888877
Q ss_pred HcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 354 EENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 354 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+. -+-+...+..+..++...|++++|.+.+..+..
T Consensus 286 ~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 286 AL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 65 233445677777777788888888877777654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=2.7e-08 Score=100.77 Aligned_cols=194 Identities=13% Similarity=0.007 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C--CHH
Q 006705 299 NSLIDMYSKCGSLTYSRRVFDNMSE----------R-TVISWNAMLVGYSKHGMGREVVELFNLMREENKVK--P--DSV 363 (634)
Q Consensus 299 ~~li~~~~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~--p--d~~ 363 (634)
+.+...|...|++++|...+++... + ....+..+...+...|++++|...+++.... ... | ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHH
Confidence 3444455555555555555544321 1 1123444555666667777777776665543 111 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHH----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYG----CVVDMLGRAGRVGEALEFIKNMP-FEPT-----AAI 433 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 433 (634)
++..+...+...|++++|...++................. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555556666677777777777766542101111111111 22334567777777777777651 1111 224
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 434 LGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 434 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+..+...+...|++++|...++++....+.. ...+..+..+|...|+.++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666777777777777776665543221 13566778888889999999988888754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=3.7e-09 Score=107.47 Aligned_cols=222 Identities=8% Similarity=0.000 Sum_probs=128.4
Q ss_pred hcccchHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhhHHHHHHH
Q 006705 271 SGLAALGHGKQVHSHVLRFE--IP---SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----R-----TVISWNAMLVG 335 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~ 335 (634)
...|++++|...+..+.+.. .+ ....++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 44555555555555544321 01 1233455566666666666666555554331 1 13356667777
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccCChHHHHHHHHHH
Q 006705 336 YSKHGMGREVVELFNLMREEN---KVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEPEIEHYGCVVDML 409 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~---g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p~~~~~~~li~~~ 409 (634)
|...|++++|++.|++..+.. +..+ ...++..+...+...|++++|...++...+... +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 777777777777776655420 1111 124566666777777888888877777765100 1122256677777778
Q ss_pred HHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 410 GRAGRVGEALEFIKNM----PF--EPT-AAILGSLLGACRVHYN---VDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
.+.|++++|...+++. +. .|. ...+..+...+...++ ++.|...+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888877764 11 122 2234444455555566 55555555542 122223356678889999999
Q ss_pred CcHHHHHHHHHHhh
Q 006705 480 RWEDVTRVRELMKE 493 (634)
Q Consensus 480 ~~~~A~~~~~~m~~ 493 (634)
++++|.+.+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887743
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=5.2e-08 Score=98.62 Aligned_cols=258 Identities=8% Similarity=-0.075 Sum_probs=136.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-Cc----hHHHHHHHH
Q 006705 132 SAYSQKAHSFEALNLFIRMLRSDTEPNEF----TFATVLTSCAGAFGFELGKQIHSLIIKSNFE-SH----IYVGSSLLD 202 (634)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 202 (634)
..+...|++++|...+++........+.. ++..+...+...|+++.|...+....+..-. .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666777776666665542111111 2333444555666666666666665543111 11 123455666
Q ss_pred HHHhcCCHHHHHHHHccCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--c--ChhhHHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPE-------R----DVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMI--S--NYVTYASVL 267 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 267 (634)
.|...|++++|...+++... + ....+..+...|...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66677777777666654321 1 1224455666667777777777777766543211 1 123445555
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCc-hhHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHH
Q 006705 268 TALSGLAALGHGKQVHSHVLRFEIPSY-VVLQN-----SLIDMYSKCGSLTYSRRVFDNMSERTV-------ISWNAMLV 334 (634)
Q Consensus 268 ~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~ 334 (634)
..+...|++++|...+....+..-.++ ...+. .++..+...|++++|...+++...++. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 566666777777777666654311111 11111 233446677777777777776654321 13455666
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 335 GYSKHGMGREVVELFNLMREE---NKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~---~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
.+...|++++|...+++.... .|..++. .++..+..++...|+.++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 677777777777777665432 0111122 134444445556666666666665554
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.8e-09 Score=98.85 Aligned_cols=205 Identities=8% Similarity=-0.006 Sum_probs=144.7
Q ss_pred cChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 006705 258 SNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLV 334 (634)
Q Consensus 258 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 334 (634)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345677777778888889999999998888877546666666688888888888888888887653 24567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHHH
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDS-------VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYGC 404 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~ 404 (634)
.|...|++++|++.|++..+. .+.+. ..|..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~ 158 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SSCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----cCCCcccHHHHHH
Confidence 888888888888888888875 22233 3466666777888888888888888874 3454 567777
Q ss_pred HHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 405 VVDMLGRAGRV--GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 405 li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++.++.|+++.....+..+.
T Consensus 159 l~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777665543 222221 1 12333333333 23445678899999999999998876666655543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=4.8e-09 Score=98.13 Aligned_cols=189 Identities=10% Similarity=-0.011 Sum_probs=123.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE----RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLA 367 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ 367 (634)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 3456666777777777888888777776542 56666666777777778888888888777764 34 3456677
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHH
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI-------EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT---AAILGS 436 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ 436 (634)
+..++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 7777777788888888777777532 2223 45666777777777777777777765 44454 345555
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+...+.. .+...++++..+.+.+...|..+. ....|.+++|...+++..+.
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555543 344455666666665544443332 33445679999999988764
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=4.3e-08 Score=99.57 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHhhcCC-----cc-ChhhHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLDEEAIELFRKLQVEGM-----IS-NYVTYA 264 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~ 264 (634)
....+...|++++|...|++... +| ..++..+...|...|++++|+..+.+..+... .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455666777777777665432 12 23566666777777777777777766654210 11 122344
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRF----EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDN 320 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~ 320 (634)
.+...+...|++++|...+...++. +.+ ....+++.+...|...|++++|...|++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555555555555544432 100 0122334444444445555544444443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=2.5e-09 Score=103.32 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCC
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE-----------RTVISWNAMLVGYSKHGMGREVVELFNLMREEN-----KVK 359 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----g~~ 359 (634)
.++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|++..... ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444444455555555555554444321 123355566666666666666666666655420 011
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-----CccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-------
Q 006705 360 P-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKD-----GFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP------- 426 (634)
Q Consensus 360 p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 426 (634)
| ...++..+...+...|++++|..+++.+.+... ..+.....+..+...|.+.|++++|...+++.-
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 235666777777778888888887777765300 012235567777888888888888888877651
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCCchHHH------HHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 427 ---FEP-TAAILGSLLGACRVHYNVDIGE------FVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 427 ---~~p-~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+ ....|..+.......+....+. ..++......|.....+..++.+|...|++++|.+.+++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2223333333333333333222 222222223344456788899999999999999999998764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=9.7e-09 Score=100.19 Aligned_cols=187 Identities=7% Similarity=-0.053 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSE-------R--TVISWNAMLVGYSKHGMGREVVELFNLMREEN---KVKPD-SVTYLAVLSG 371 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a 371 (634)
|...|++++|...|.+..+ + ...+|+.+...|.+.|++++|+..|++..+.. |-.+. ..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555544321 1 13466777777777777777777777665430 11111 2467777888
Q ss_pred Hhcc-CcHHHHHHHHHHhhhccCCccC---ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHH
Q 006705 372 CSHG-GMEDRGLAVFHEIVDCKDGFEP---EIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP---TA-----AILGSLL 438 (634)
Q Consensus 372 ~~~~-g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll 438 (634)
|... |++++|...|++..+..++... ...++..+...|.+.|++++|+..|++. ...| .. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 9999999999888754211000 1456888899999999999999999876 2122 21 1566777
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCch-----HHHHHHHHh--hcCCcHHHHHHHHHH
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGN-----YVILSNLYA--SAGRWEDVTRVRELM 491 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 491 (634)
.++...|+++.|...+++.++++|..... +..++..|. ..+++++|.+.++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 88888999999999999999999875443 334566664 456788888877655
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=5.5e-08 Score=93.02 Aligned_cols=183 Identities=7% Similarity=-0.020 Sum_probs=109.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYL 366 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~ 366 (634)
+...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+...-.|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455555566666666666666666553 2 2 345555666666666666666666666654111112 23344
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 006705 367 AVLSGCSH--------GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLL 438 (634)
Q Consensus 367 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 438 (634)
.+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44555555 666666666666666432 11112221111111000000 01135567
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhc----------CCcHHHHHHHHHHhhC
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASA----------GRWEDVTRVRELMKEK 494 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 494 (634)
..+...|+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++.+.+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 888999999999999999999999843 4778889999877 8999999999998764
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.92 E-value=1.3e-08 Score=111.12 Aligned_cols=164 Identities=10% Similarity=0.105 Sum_probs=126.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SVTYLAV 368 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~l 368 (634)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 3466777888888888888888888887652 35678888888888888888888888888775 344 5778888
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
..++...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++. ...| +...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 888888888888888888887531 235778888888888888888888888876 3334 46678888888888888
Q ss_pred chHHHHHHHHHhccCC
Q 006705 447 VDIGEFVGQRLMEIEP 462 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p 462 (634)
+++|...++++.++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888887776543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=3.6e-08 Score=96.15 Aligned_cols=243 Identities=10% Similarity=-0.016 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--C-CHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006705 177 LGKQIHSLIIKSNFESHIYVGSSLLDMYAKA--G-RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQV 253 (634)
Q Consensus 177 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 253 (634)
+|.+++.+..+.- ++....+ .+ + +. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776652 3322222 12 2 33 2 488888876653 6678888999999998887754
Q ss_pred c----CCccC-hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 006705 254 E----GMISN-YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS 328 (634)
Q Consensus 254 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 328 (634)
. |-+++ ..+|..+..++...|++++|...+...++. +.+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 3 21222 345666666677777777777766665542 1112222211 124
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCCh----
Q 006705 329 WNAMLVGYSKH-GMGREVVELFNLMREEN---KVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEI---- 399 (634)
Q Consensus 329 ~~~li~~~~~~-g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~---- 399 (634)
|+.+...|... |++++|+..|++..+.. +..+. ..++..+...+...|++++|...|+...+..+. .+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~ 198 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-NRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-CTTTGGGH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCcccHHH
Confidence 55556666664 66666666666655420 00000 234556666666677777777777766653101 1111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCchHHHHHHHHHhccCCC
Q 006705 400 -EHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAA------ILGSLLGACR--VHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 400 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~ 463 (634)
..|..+..+|...|++++|...+++. .+.|+.. .+..++.++. ..++++.|...++++..++|.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14555666666777777777777665 3233321 2333444443 234455555555555555554
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=4.1e-08 Score=94.58 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 125 VSWTAMISAYSQKAHSFEALNLFIRMLRS------DTEP-NEFTFATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555556666666666666666555432 1111 123344444445555555555555554443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=2.8e-07 Score=88.45 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccC-----ChHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKP-DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-----EIEH 401 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-----~~~~ 401 (634)
++..+..++...|++++|++++++.... +..+ +...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHH
Confidence 3334444455555555555555544332 1111 223344444455555555555555555542 233 1233
Q ss_pred HHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhcc----------CCCCCc
Q 006705 402 YGCVVDM--LGRAG--RVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEI----------EPENAG 466 (634)
Q Consensus 402 ~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~ 466 (634)
...|..+ ....| ++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+. +|+++.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 3333333 11222 555555555554 22233222223333555555555555555554443 355555
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++..++.+....|+ +|.+++.++.+
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555555555554 55666666654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=5.8e-08 Score=81.56 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+...+...|++++|+.+|+++.+. .+.+..++..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------
Confidence 3455555555555566666555555544 1223344444444555555555555555554432
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 408 MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
.+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|.+.|++++|.+.
T Consensus 65 -------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 65 -------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp -------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 1123344444555555555555555555555566666666666777777777777777777
Q ss_pred HHHHhh
Q 006705 488 RELMKE 493 (634)
Q Consensus 488 ~~~m~~ 493 (634)
++.+.+
T Consensus 126 ~~~~~~ 131 (136)
T 2fo7_A 126 YQKALE 131 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776654
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=8.7e-08 Score=80.46 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++... .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 56778899999999999999999875 346788999999999999999999999999886 3446677888888999
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999998864 2345777888888888888888888888765
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=7.6e-06 Score=85.61 Aligned_cols=199 Identities=11% Similarity=-0.032 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhh
Q 006705 242 EEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYS-RRVFDN 320 (634)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~f~~ 320 (634)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..++. |.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34567788877653 344556666666677788888888888888887 444444332 2222111111 111111
Q ss_pred cC------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHH
Q 006705 321 MS------------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLA--VLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 321 m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~ 386 (634)
.. ......|...+..+.+.+..+.|..+|++. +. ..++...|.. .+... ..++.+.|..+|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife 344 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYY-ATGSRATPYNIFS 344 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHH-HHCCSHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHH-HCCChHHHHHHHH
Confidence 10 001234555555555666677777777777 32 1123333332 12111 1235777777777
Q ss_pred HhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006705 387 EIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQR 456 (634)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 456 (634)
...+.+ +-++..+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++
T Consensus 345 ~al~~~---~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 345 SGLLKH---PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 776642 2234455566666677777777777777763 2445555555554555555444444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.78 E-value=8.9e-08 Score=91.56 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhH
Q 006705 259 NYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSY---VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R----TVISW 329 (634)
Q Consensus 259 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~----~~~~~ 329 (634)
+...+......+.+.|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677778889999999999999999875 223 66788899999999999999999998863 3 13467
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChH
Q 006705 330 NAMLVGYSK--------HGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 330 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... ...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a--------------~~~~~~~~~~------~~~ 149 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDA--------------TQKIRELRAK------LAR 149 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHH--------------HHHHHHHHHH------HHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHH--------------HHHHHHHHHH------HHH
Confidence 778888888 99999999999999886 3443 22211 1111111110 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHhccCCCCC
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVH----------YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556677788888888888888775 11232 34566666666655 788899999999999999875
Q ss_pred c---hHHHHHHHHhhcCCc
Q 006705 466 G---NYVILSNLYASAGRW 481 (634)
Q Consensus 466 ~---~~~~l~~~~~~~g~~ 481 (634)
. ++..+..++.+.|++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3 233444444444443
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=2.3e-07 Score=86.46 Aligned_cols=184 Identities=8% Similarity=-0.034 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT----VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS-VTYLA 367 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ 367 (634)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+...-.|.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33445566677788888888888887763 32 2466777788888888888888888887751111111 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006705 368 VLSGCSH------------------GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEP 429 (634)
Q Consensus 368 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 429 (634)
+..++.. .|++++|...|+.+.+.+ +-+...+.++..+. .+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----HHHHHH----------
Confidence 3344432 456677777777776532 11222222111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC---chHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA---GNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345678889999999999999999999865 5688999999999999999999999887643
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=7.4e-07 Score=85.48 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=125.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 279 GKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 279 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+...++..+..+ +++......+...|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555544 34444455777888888888888888887633 245667778888999999999999999997
Q ss_pred HcCCCCC-----CHHHHHHHHHHH--h--ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 354 EENKVKP-----DSVTYLAVLSGC--S--HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 354 ~~~g~~p-----d~~t~~~ll~a~--~--~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
+. .| +..+...+..++ . ..+++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 56 356666666662 2 234899999999998754 35433434445578899999999999876
Q ss_pred C-CC-----------CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 425 M-PF-----------EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 425 m-~~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
+ .. +.|..+...++......|+ .+.++.+++.+..|+++.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 4 11 2345556566666666676 788999999999999753
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=1.1e-08 Score=88.76 Aligned_cols=140 Identities=9% Similarity=0.001 Sum_probs=100.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPD-SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG 413 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 413 (634)
.+...|++++|++.+++.... .|+ ...+..+...|...|++++|...|+...+.. +-+...|..+..+|.+.|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 344456677777777766432 333 3455566777778888888888888777531 335777888888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHH-HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 414 RVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEF-VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 414 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
++++|+..|++. ...| +...|..+...+...|+.+++.. .++++++++|+++.+|.....++.+.|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888775 3333 56678888888888888876554 5688999999999999888888887774
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=3e-08 Score=108.81 Aligned_cols=169 Identities=10% Similarity=-0.075 Sum_probs=119.0
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 006705 306 SKCGSLTYSRRVFDNMS-----------ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSH 374 (634)
Q Consensus 306 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~ 374 (634)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. -+-+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56677777777777664 235567777777788888888888888877765 23345667777777777
Q ss_pred cCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++. .. +.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888777531 2256677777778888888877 7777765 22 2356677777778888888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHhhcCC
Q 006705 453 VGQRLMEIEPENAGNYVILSNLYASAGR 480 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 480 (634)
.++++.+++|++...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888877777778777766555
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.3e-07 Score=91.75 Aligned_cols=174 Identities=9% Similarity=-0.041 Sum_probs=131.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc
Q 006705 313 YSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392 (634)
Q Consensus 313 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 392 (634)
.....+......+...+..+...+.+.|++++|+..|++..+. -+-+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444444444445566677777888889999999999988875 2335567778888888999999999998888743
Q ss_pred CCccCChHHHHHHH-HHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--Cch
Q 006705 393 DGFEPEIEHYGCVV-DMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN--AGN 467 (634)
Q Consensus 393 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 467 (634)
.|+........ ..+.+.++.++|.+.+++. . .+.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333333 2356777778888887775 2 23467788888899999999999999999999999987 778
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 468 YVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 468 ~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999988887653
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.8e-07 Score=83.34 Aligned_cols=63 Identities=3% Similarity=-0.089 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC--CchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 430 TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN--AGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 430 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
+...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45566666666667777777777777777777653 4467777777888888888777777654
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=8.1e-07 Score=97.36 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=144.6
Q ss_pred hcccchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 006705 271 SGLAALGHGKQVHSHVL--------RFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKH 339 (634)
Q Consensus 271 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 339 (634)
...|++++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788889998888887 33 255677888888999999999999999998773 4678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL 419 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 419 (634)
|++++|++.|++..+. -+-+...+..+..++...|++++ ...|+...+.. +.+...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 23345778888889999999999 99999998642 336788999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHhccCCCCCc
Q 006705 420 EFIKNM-PFEPT-AAILGSLLGACRVHYN-----VDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 420 ~~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 466 (634)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999997 45666 4567667777655554 23344455555555555444
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1e-06 Score=81.11 Aligned_cols=161 Identities=6% Similarity=-0.113 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhhhccCCccCChH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG----MEDRGLAVFHEIVDCKDGFEPEIE 400 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~p~~~ 400 (634)
++.++..+...|...+++++|++.|++..+. | +...+..+...|.. + ++++|..+|+...+. + +..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g---~~~ 86 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G---SKS 86 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T---CHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C---CHH
Confidence 5566666666677777777777777777665 3 44555556566666 5 777777777777653 3 556
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHhccCCCCCchH
Q 006705 401 HYGCVVDMLGR----AGRVGEALEFIKNM-PFEPT---AAILGSLLGACRV----HYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 401 ~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
.+..|..+|.. .+++++|++.|++. ...|. ...+..|...|.. .++.++|...++++.+. |.++..+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 67777777766 67788888888776 32332 5677777777776 67888888888888877 5556788
Q ss_pred HHHHHHHhhc-C-----CcHHHHHHHHHHhhCCC
Q 006705 469 VILSNLYASA-G-----RWEDVTRVRELMKEKAV 496 (634)
Q Consensus 469 ~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 496 (634)
..|..+|... | ++++|.+.++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888888764 3 88999999998877664
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=2.4e-07 Score=99.59 Aligned_cols=160 Identities=9% Similarity=-0.058 Sum_probs=124.7
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAV 384 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 384 (634)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. -+.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998874 35778999999999999999999999999875 234567888899999999999999999
Q ss_pred HHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCchHHHHHHHHHhc
Q 006705 385 FHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH---YNVDIGEFVGQRLME 459 (634)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 459 (634)
+++..+.. +.+...+..+...|.+.|++++|.+.+++. .. +.+...+..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998642 345789999999999999999999999986 22 34577888899999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 006705 460 IEPENAGNYVILS 472 (634)
Q Consensus 460 ~~p~~~~~~~~l~ 472 (634)
.+|.+...|..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=9e-07 Score=86.81 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=154.0
Q ss_pred hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006705 237 QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRR 316 (634)
Q Consensus 237 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 316 (634)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 0 11146677777666554 445777888888888
Q ss_pred HHhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 006705 317 VFDNMSE-----RT----VISWNAMLVGYSKHGMGREVVELFNLMREEN--KVKPD--SVTYLAVLSGCSHGGMEDRGLA 383 (634)
Q Consensus 317 ~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~ 383 (634)
.|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.. .-.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 11 3478888889999999999999998865430 01122 3567778888888 99999999
Q ss_pred HHHHhhhccCCcc---CChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHH
Q 006705 384 VFHEIVDCKDGFE---PEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEF 452 (634)
Q Consensus 384 ~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~ 452 (634)
.|+...+.++... ....++..+...|.+.|++++|+..|++. +..++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876421100 01467888999999999999999999876 11122 2256666677788899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHhhcCCcHHHHHH
Q 006705 453 VGQRLMEIEPENAGN-----YVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 453 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 487 (634)
.+++.+ +.|..... ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875433 33455555 56776666553
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=5.7e-07 Score=96.68 Aligned_cols=147 Identities=10% Similarity=-0.055 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 006705 273 LAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELF 349 (634)
Q Consensus 273 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (634)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467889999999888764 45678888999999999999999999998764 35778899999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 006705 350 NLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA---GRVGEALEFIKNM 425 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 425 (634)
++..+. .+.+...+..+..++...|++++|.+.++...+.. +.+...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999886 23456788888899999999999999999998642 34577888999999999 9999999999886
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=1.9e-06 Score=83.47 Aligned_cols=161 Identities=6% Similarity=-0.014 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHH-HHHH
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAM-LVGY 336 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~ 336 (634)
...+..+...+...|++++|...++.+++.. +.+...+..|...|.+.|++++|...|+++.. |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555556666777777777777776664 44566777777888888888888888888764 433322222 2235
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.+.++.++|++.|++.... -+.+...+..+..++...|++++|...|..+.+.. .-..+...+..++..|...|+.+
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCC
Confidence 6667777788888777765 23445677777777888888888888888877642 11112566777777777778777
Q ss_pred HHHHHHHh
Q 006705 417 EALEFIKN 424 (634)
Q Consensus 417 ~A~~~~~~ 424 (634)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77776654
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=8.4e-06 Score=78.90 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC---
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMED--RGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR--- 414 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--- 414 (634)
+++++++++++++.+. -+-|..+|..-...+.+.|.++ +++++++.+.+.. .-|-..|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccch
Confidence 4556666666666654 2334455555444455555555 6666666666431 2344555555555555554
Q ss_pred ---HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHhccC---CCCCchHHHHHHHHhhcCCcHHHH
Q 006705 415 ---VGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDI-GEFVGQRLMEIE---PENAGNYVILSNLYASAGRWEDVT 485 (634)
Q Consensus 415 ---~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 485 (634)
++++++.++++ ..+-|...|+-+-..+...|+... ...+.+++.+++ |.++.++..++++|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66666666654 223466677777666666666433 445666666555 666777778888888888888888
Q ss_pred HHHHHHhh
Q 006705 486 RVRELMKE 493 (634)
Q Consensus 486 ~~~~~m~~ 493 (634)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888765
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.6e-06 Score=79.58 Aligned_cols=183 Identities=9% Similarity=-0.016 Sum_probs=103.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006705 230 AIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKC 308 (634)
Q Consensus 230 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 308 (634)
.....+.+.|++++|+..|++..+. .|+... +.. . . ... .........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~---~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-N---VDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-H---SCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-h---hcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 3444566777777777777777664 333221 111 0 0 000 0001122334466677777
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc--HHHHHH
Q 006705 309 GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM--EDRGLA 383 (634)
Q Consensus 309 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~ 383 (634)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. -+-+..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777777777776652 35667777777788888888888888877765 22344566666666654443 333444
Q ss_pred HHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006705 384 VFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLG 439 (634)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 439 (634)
.+.... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444433 22232333444555666677888888888775 55677655554443
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.7e-06 Score=82.78 Aligned_cols=161 Identities=6% Similarity=-0.011 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDSV----TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHY 402 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~ 402 (634)
..+..+...|++++|.+++++..+.....|+.. .+..+...+...|++++|...|+.+.+.. .-.++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHH
Confidence 346678889999999999998876522333322 23346666777889999999999988742 11222 3468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------Cch
Q 006705 403 GCVVDMLGRAGRVGEALEFIKNMP-------F-EPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGN 467 (634)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 467 (634)
+.+...|...|++++|...++++- . .+. ..++..+...|...|++++|...+++++++.+.. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 889999999999999998888751 1 111 2367788899999999999999999888765432 457
Q ss_pred HHHHHHHHhhcCC-cHHHHHHHHHHh
Q 006705 468 YVILSNLYASAGR-WEDVTRVRELMK 492 (634)
Q Consensus 468 ~~~l~~~~~~~g~-~~~A~~~~~~m~ 492 (634)
|..++.+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 699999888774
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=9.8e-07 Score=78.53 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHH--Hh
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTA--LS 271 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~ 271 (634)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+... ..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~-~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY-KSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH-HHHHHHHHHH
Confidence 33456667778888888888877764 35667777788888888888888888777654 333322 222111 11
Q ss_pred cccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---hhhHHHHHHHHHhcCChHHHH
Q 006705 272 GLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RT---VISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 272 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~---~~~~~~li~~~~~~g~~~~A~ 346 (634)
..+....+...+...++.. +.+...+..+...|.+.|++++|...|+++.+ |+ ...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233556666666554 34566666677777777777777777766543 21 346666777777777777777
Q ss_pred HHHHHHH
Q 006705 347 ELFNLMR 353 (634)
Q Consensus 347 ~~~~~m~ 353 (634)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1.1e-07 Score=82.22 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=101.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVH 444 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 444 (634)
|...+...|++++|+..++.... ..| +...+-.+...|.+.|++++|++.|++. .. +.+..+|..+...+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33456677899999999998874 244 3455677899999999999999999986 33 34678899999999999
Q ss_pred CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH-HHHHhh
Q 006705 445 YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV-RELMKE 493 (634)
Q Consensus 445 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 493 (634)
|++++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765 466654
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=4e-07 Score=78.51 Aligned_cols=100 Identities=8% Similarity=-0.013 Sum_probs=88.1
Q ss_pred ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 395 FEP-EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 395 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
+.| +...+..+...|.+.|++++|...|++. .. +.+...|..+..++...|++++|...++++.+++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 4667888888899999999999999887 22 34678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|.+.|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999764
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=1.1e-06 Score=86.22 Aligned_cols=126 Identities=8% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhh
Q 006705 263 YASVLTALSGLAALGHGKQVHSHVLRF----EIP-SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-----RT----VIS 328 (634)
Q Consensus 263 ~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~ 328 (634)
|..+...+...|++++|...+...++. |-+ ....+++.+...|.+ |++++|...|++..+ .+ ..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344444444445555555544444322 100 012233444444444 555555555444321 00 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 329 WNAMLVGYSKHGMGREVVELFNLMREEN---KVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
++.+...|.+.|++++|++.|++..... +..+.. .++..+..++...|++++|...|+...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555666666666666665554420 111111 133344444444555555555555554
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=3e-06 Score=77.75 Aligned_cols=92 Identities=10% Similarity=-0.103 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 298 QNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 298 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
+..+...|...|++++|...|++...++...|..+...|.+.|++++|++.|++..+. .+.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445666777788888888888877777777888888888888888888888877765 23455667777777777788
Q ss_pred HHHHHHHHHHhhhc
Q 006705 378 EDRGLAVFHEIVDC 391 (634)
Q Consensus 378 ~~~a~~~~~~~~~~ 391 (634)
+++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888777777753
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.53 E-value=2.8e-06 Score=77.87 Aligned_cols=137 Identities=9% Similarity=0.002 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHH
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDML 409 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 409 (634)
+.+...|.+.|++++|+..|++..+. -+-+...+..+..++...|++++|...|+.+.+.. +.+...+..+...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHH
Confidence 34888999999999999999999986 23456788899999999999999999999999642 33678899999988
Q ss_pred HHcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 410 GRAGR--VGEALEFIKNMPFEPTA--AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 410 ~~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|++ .....|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 76654 455666776663 3443 344455566777899999999999999999973 33333433
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=3.9e-07 Score=78.54 Aligned_cols=97 Identities=8% Similarity=-0.053 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...+.+.|++++|...|++. . .+.+...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5667778888999999999999999886 2 2347788889999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=1.2e-05 Score=84.21 Aligned_cols=373 Identities=8% Similarity=-0.046 Sum_probs=212.8
Q ss_pred cC-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 006705 71 QR-TLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRE--RNVVSWTAMISAYSQKAH-SFEALNL 146 (634)
Q Consensus 71 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 146 (634)
.| ++..|+.+++.++.. -|. |+.+.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 477888888887765 232 889999999998765 888899988887777663 3456677
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHh----ccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccC
Q 006705 147 FIRMLRS-DTEP-NEFTFATVLTSCA----GAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECL 220 (634)
Q Consensus 147 ~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 220 (634)
|+..+.. |..| +...|...+..+. ..++++.+..+++.+++.....-..+|......- +..+...+.++..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~-- 147 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVG-- 147 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHH--
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHH--
Confidence 7777653 4434 4455555555433 2356777888888888632111112222221111 1111222222221
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc--c-----chHHHHHHHHHHHHcCCCC
Q 006705 221 PERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL--A-----ALGHGKQVHSHVLRFEIPS 293 (634)
Q Consensus 221 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~-----~~~~a~~i~~~~~~~~~~~ 293 (634)
... +.+..|..+++++...--..+...|...+.--... + ..+.+..+++.++... +.
T Consensus 148 -------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 148 -------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp -------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 111 12333444444333210001122333322221111 0 1234667888887754 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCC---
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE-R-TVISWNAMLVGYSKHGMGREVVELFNLMREEN--------KVKP--- 360 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------g~~p--- 360 (634)
+..+|-..+..+.+.|+++.|..+|++... | +...|. .|+...+.++. ++.+.+.. +..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 678888888888999999999999986543 3 222232 23332222222 33332210 0011
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHH
Q 006705 361 DSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM--PFEPTAAILGSL 437 (634)
Q Consensus 361 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~l 437 (634)
....|...+....+.+.++.|..+|+.. +.. + .+...|...+.+-.+.+ +.+.|..+|+.. ..+.+...|...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-G--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-C--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-C--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 1244566666666677899999999988 321 2 34555654444444444 699999999875 222234567777
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+.-....|+.+.+..+++++. .....+...++.=...|+.+.+.++++++..
T Consensus 361 id~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777788899999999998873 3345677777776778999999998887753
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.50 E-value=2.4e-06 Score=79.46 Aligned_cols=185 Identities=13% Similarity=-0.030 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hhHHH
Q 006705 260 YVTYASVLTALSGLAALGHGKQVHSHVLRFEIPS--YVVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTV----ISWNA 331 (634)
Q Consensus 260 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~----~~~~~ 331 (634)
...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ |+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864321 235777889999999999999999999763 332 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhcc
Q 006705 332 MLVGYSK------------------HGMGREVVELFNLMREENKVKPDSV-TYLAVLSGCSHGGMEDRGLAVFHEIVDCK 392 (634)
Q Consensus 332 li~~~~~------------------~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 392 (634)
+..++.+ .|++++|+..|+++.+. .|+.. ..... .....+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHH--------------HHHHHHHHH-
Confidence 5555554 57899999999999875 45543 22111 111111110
Q ss_pred CCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 393 DGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA----AILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 393 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
.......+...|.+.|++++|+..|+++ ...|+. ..+..+..++...|+.++|...++.+....|++..+
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112235677888899999999998886 222332 457778889999999999999999988888886543
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=6.8e-05 Score=72.53 Aligned_cols=228 Identities=9% Similarity=-0.006 Sum_probs=166.2
Q ss_pred cCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc--
Q 006705 238 LGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY----SKC-- 308 (634)
Q Consensus 238 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~-- 308 (634)
....++|+.++..+... .|+..| ++.--..+...+ +++++...+..++... +.+..+|+.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446777777777764 455443 455555555666 7778888887777765 44555666544444 444
Q ss_pred -CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc-----
Q 006705 309 -GSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGR--EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM----- 377 (634)
Q Consensus 309 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~----- 377 (634)
++++++..+++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+. -.-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 788899998888763 57788888888888888888 999999999987 34466777766666666666
Q ss_pred -HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCchHH
Q 006705 378 -EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE-ALEFIKNM-PF----EPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 378 -~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +..+..+. .. ..+...+..+...+...|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88999999988864 24578889999999999988554 55566665 11 34778888899999999999999
Q ss_pred HHHHHHHhc-cCCCCCchHHHHHH
Q 006705 451 EFVGQRLME-IEPENAGNYVILSN 473 (634)
Q Consensus 451 ~~~~~~~~~-~~p~~~~~~~~l~~ 473 (634)
..+++.+.+ .+|.....|...+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999986 79987666655443
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=1.1e-06 Score=73.16 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGAC 441 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 441 (634)
.+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444445555555555555555555321 223455555555555555555555555543 11 22344555555566
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
...|++++|...++++++++|++...+..|.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66666666666666666666665555444443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.44 E-value=2.9e-06 Score=77.87 Aligned_cols=123 Identities=11% Similarity=-0.065 Sum_probs=87.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006705 366 LAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRV 443 (634)
Q Consensus 366 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~ 443 (634)
..+...+...|++++|...|+... .|+...+..+...|.+.|++++|++.+++. . .+.+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445556666666666665442 345666666667777777777777766654 1 12355666777777777
Q ss_pred cCCchHHHHHHHHHhccCCCCC----------------chHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 444 HYNVDIGEFVGQRLMEIEPENA----------------GNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 444 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.|++++|...++++.+..|.+. ..+..++.+|.+.|++++|.+.++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777777777665 78899999999999999999999998765
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=4.4e-06 Score=81.18 Aligned_cols=165 Identities=6% Similarity=-0.022 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC-ccCC--
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVK-PDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDG-FEPE-- 398 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~p~-- 398 (634)
..+...+..+...|++++|++.+++..+. ... ++. ..+..+...+...|++++|...++...+.... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677788899999999999887765 221 111 22334455677888999999999888753211 1112
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC------
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT-----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------ 463 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------ 463 (634)
..+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 457888999999999999999988775 11222 257788888999999999999999888765432
Q ss_pred CCchHHHHHHHHhhcCCcHHH-HHHHHHHh
Q 006705 464 NAGNYVILSNLYASAGRWEDV-TRVRELMK 492 (634)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 492 (634)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145688899999999999999 77677654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=5.8e-07 Score=86.86 Aligned_cols=188 Identities=9% Similarity=-0.039 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMS--E-RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSG 371 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a 371 (634)
...+..+...|.+.|++++|...|++.. . .+...|..+...|.+.|++++|+..+++..+. .+-+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445555666666677777766666554 2 25566666777777777777777777776653 22344566666667
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCCh-HHHHHHHH---HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPEI-EHYGCVVD---MLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNV 447 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 447 (634)
+...|++++|...|+...+. .|+. ..+...+. ...+...+.. .......++......+ ..+. .|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL----AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHH
Confidence 77777777777777766643 2211 01111111 1122212221 1112223333333333 2222 5778
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhc-CCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASA-GRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++.+.+|++......+...+.+. +.+++|.++|....+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888888888766666677777766 6788999999888653
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.41 E-value=1.6e-06 Score=72.22 Aligned_cols=100 Identities=9% Similarity=0.058 Sum_probs=89.3
Q ss_pred ccCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 395 FEPE-IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 395 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 466788899999999999999999986 22 34688899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=1.1e-05 Score=74.18 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=85.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC----CcHHHHHHHHHHHHhCCCCchHHHH
Q 006705 123 NVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAF----GFELGKQIHSLIIKSNFESHIYVGS 198 (634)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~ 198 (634)
++.++..|-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555555666666665555543 33444444444444 4 5666666666665543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHccCCCCC-----hhhHHHHHHHHHh----cCChHHHHHHHHHHhhcCCccChhhHHH
Q 006705 199 SLLDMYAK----AGRIHEARGVFECLPERD-----VVSCTAIISGYAQ----LGLDEEAIELFRKLQVEGMISNYVTYAS 265 (634)
Q Consensus 199 ~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 265 (634)
.|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55555555 566666666666654432 3566666666666 55666666666666554 122233444
Q ss_pred HHHHHhcc------cchHHHHHHHHHHHHcC
Q 006705 266 VLTALSGL------AALGHGKQVHSHVLRFE 290 (634)
Q Consensus 266 ll~~~~~~------~~~~~a~~i~~~~~~~~ 290 (634)
+-..+... .+.++|...+....+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444321 25666666666666555
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=2.5e-06 Score=70.23 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...++++ ..+.+..+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344444555555555555555555555421 223445555555666666666666665554 112345556666666
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
+...|+++.|...++++.+..|.++..+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 66666777777777777777777666666666665543
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=3e-06 Score=72.26 Aligned_cols=97 Identities=7% Similarity=-0.140 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...+.+.|++++|...|++. . .+.+...|..+..++...|++++|...++++.+++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556677788888999999999999886 2 2346778888899999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=3.4e-06 Score=73.70 Aligned_cols=125 Identities=8% Similarity=-0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 442 (634)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. . .+.+...|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444445555666666666666666542 1234556666666666677777777666654 1 1234566777777777
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchHHH--HHHHHhhcCCcHHHHHHHHHHh
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNYVI--LSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..|++++|...++++.+..|.+...+.. ++..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7888888888888888888887766644 4444778889999988888764
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.35 E-value=3.6e-06 Score=69.91 Aligned_cols=116 Identities=7% Similarity=-0.064 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34444455555556666666666655542 1224555555666666666666666666554 11 2345566666666
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCc
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRW 481 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 481 (634)
+...|+++.|...++++.+..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.34 E-value=3.4e-06 Score=70.50 Aligned_cols=113 Identities=8% Similarity=-0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGAC 441 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 441 (634)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. . .+.+...|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3333444444444444444444444421 1123344444444444444444444444443 1 112344555555555
Q ss_pred HhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcC
Q 006705 442 RVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAG 479 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 479 (634)
...|++++|...++++.+..|.+...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 56666666666666666666666666666666665554
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=4e-05 Score=74.35 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCC-H
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE------R----TVISWNAMLVGYSKHGMGREVVELFNLMREE---NKVKPD-S 362 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~pd-~ 362 (634)
+++.+...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|++.+++..+. .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 344555555555555555555544431 1 1235555666666666666666666655432 012222 3
Q ss_pred HHHHHHHHHHhccCc-HHHHHHHHHHhhh
Q 006705 363 VTYLAVLSGCSHGGM-EDRGLAVFHEIVD 390 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~~ 390 (634)
.+|..+..++...|+ +++|...++....
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 556666666666673 4667666666554
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=2.2e-06 Score=85.15 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+..+ . +-....|..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~----~------~~~~~~~~n 201 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKA----Q------ALRLASHLN 201 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHH----H------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHH----H------HHHHHHHHH
Confidence 3445666666666666666666666666654 2222100 00111100 0 001467788
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWE 482 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 482 (634)
+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..++.+.|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888889999998888876 22 3467788888899999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHh
Q 006705 483 DV-TRVRELMK 492 (634)
Q Consensus 483 ~A-~~~~~~m~ 492 (634)
+| .+.++.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98 44666653
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=2.1e-06 Score=76.30 Aligned_cols=119 Identities=5% Similarity=0.068 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCc--
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA-CRVHYNV-- 447 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~-~~~~~~~-- 447 (634)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++. .. +.+...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44566777777777766531 335667777777777778888777777765 11 2355666667777 6677887
Q ss_pred hHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 448 DIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 448 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.|...++++++..|.++..+..++.+|...|++++|.+.++...+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888764
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=2.2e-06 Score=81.10 Aligned_cols=133 Identities=11% Similarity=-0.078 Sum_probs=68.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHH
Q 006705 332 MLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDML 409 (634)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~ 409 (634)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-CcccHHHHHHHHHHHH
Confidence 444555566666666666555432 243333333333455566666666666543321 0 111 22455556666
Q ss_pred HHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 410 GRAGRVGEALEFIKNM---PFEPT--AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+.|++++|++.|++. +..|. ...+.....++...|+.++|...++++...+|. ...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 6666666666666654 11122 224445555666666666666666666666665 4433333
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.8e-06 Score=69.15 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...+..+...+.+.|++++|+..|++. . .+.+...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677778888888888888888875 2 23467788888888889999999999999999999999889999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006705 477 SAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~ 494 (634)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=5.1e-05 Score=71.74 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD--SVTYLAVLSGC 372 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd--~~t~~~ll~a~ 372 (634)
+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... ..|. ...+..+-.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 344567778889999999999999874 43335666667888999999999999865443 1221 23677788889
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPE--IEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSL 437 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 437 (634)
...|++++|+..|++.... ...|. ......+..++.+.|+.++|..+|+++ ...|+...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999998753 33253 456777888899999999999999987 334564344333
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=7.2e-07 Score=81.15 Aligned_cols=172 Identities=8% Similarity=-0.087 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG 376 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g 376 (634)
..+......|+++.|.+.|+.-.+. ....|..+...+...|++++|+..|++..+...-.|+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-----------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-----------
Confidence 3444455567777777666643321 34566667777778888888888888777641111111000
Q ss_pred cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 006705 377 MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVG 454 (634)
Q Consensus 377 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 454 (634)
....-.. ......|..+..+|.+.|++++|+..+++. . .+.+...|..+..++...|+++.|...+
T Consensus 78 -------~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -------ILLDKKK-----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -------HHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------hHHHHHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000000 001356667777788888888888887775 2 1345677888888888899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHhhcCCcHHHH-HHHHHHhhC
Q 006705 455 QRLMEIEPENAGNYVILSNLYASAGRWEDVT-RVRELMKEK 494 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 494 (634)
++++++.|.+...+..+..++...|+.+++. ..+..|...
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888889999888888877776 555555443
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=5.7e-06 Score=66.57 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC--CCchHHHHHHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE--NAGNYVILSNL 474 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 474 (634)
...+..+...+.+.|++++|...+++. . .+.+...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445556666677777777777777664 1 1235666777777777788888888888888888888 77888888888
Q ss_pred Hhhc-CCcHHHHHHHHHHhhCC
Q 006705 475 YASA-GRWEDVTRVRELMKEKA 495 (634)
Q Consensus 475 ~~~~-g~~~~A~~~~~~m~~~~ 495 (634)
|... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888886653
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=1.1e-05 Score=71.48 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=91.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH-HHHcCCH
Q 006705 337 SKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM-LGRAGRV 415 (634)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~ 415 (634)
...|++++|+..|++..+. .+.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 3467778888888887765 23455777777788888888888888888887532 3356677777777 7788887
Q ss_pred --HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 416 --GEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 416 --~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
++|...+++. .. +.+...|..+...+...|+++.|...++++++..|+++..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 8888888776 22 2356677788888888899999999999999998887543
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.19 E-value=9.1e-06 Score=73.70 Aligned_cols=46 Identities=22% Similarity=0.081 Sum_probs=21.6
Q ss_pred cCCHHHHHH---HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 207 AGRIHEARG---VFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 207 ~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555544
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.2e-05 Score=67.69 Aligned_cols=98 Identities=8% Similarity=-0.053 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
.+...+..+...+.+.|++++|...|++. . .+.+...|..+...+...|+++.|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45777888888888888888888888875 2 234577888888888999999999999999999999999999999999
Q ss_pred HhhcCCcHHHHHHHHHHhhC
Q 006705 475 YASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 475 ~~~~g~~~~A~~~~~~m~~~ 494 (634)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.16 E-value=4.3e-05 Score=62.57 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|..+++.+.+. .+.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la 84 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHH
Confidence 34555555555666666666666655554 1233445555555556666666666666665542 123445555566
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 006705 407 DMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m 425 (634)
..|.+.|++++|...++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666554
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.16 E-value=8.3e-06 Score=73.96 Aligned_cols=148 Identities=10% Similarity=-0.061 Sum_probs=74.1
Q ss_pred cCCChHHHHH---HHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhccCCcH
Q 006705 105 KCECLSDARK---MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRS----DTEP-NEFTFATVLTSCAGAFGFE 176 (634)
Q Consensus 105 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 176 (634)
..|++++|.+ ++..-+.....+|+.+...|...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 444433334455666666666666666666666665441 1111 1233444455555666666
Q ss_pred HHHHHHHHHHHhC--CC----CchHHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----hhhHHHHHHHHHhcCCh
Q 006705 177 LGKQIHSLIIKSN--FE----SHIYVGSSLLDMYAKAGRIHEARGVFECLPE-----RD----VVSCTAIISGYAQLGLD 241 (634)
Q Consensus 177 ~a~~~~~~~~~~g--~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~ 241 (634)
+|...+...++.. .+ ....++..+...|...|++++|...|++... .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 6666665554430 11 1123455555566666666666655554321 11 11234455555566666
Q ss_pred HHHHHHHHHHh
Q 006705 242 EEAIELFRKLQ 252 (634)
Q Consensus 242 ~~A~~~~~~m~ 252 (634)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=5.7e-06 Score=68.27 Aligned_cols=94 Identities=6% Similarity=-0.143 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
.+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|...++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677788899999999988886 22 346778888888999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhC
Q 006705 479 GRWEDVTRVRELMKEK 494 (634)
Q Consensus 479 g~~~~A~~~~~~m~~~ 494 (634)
|++++|.+.+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.00019 Score=70.23 Aligned_cols=243 Identities=10% Similarity=0.010 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh-HHHHHHHHhccc-chHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT-YASVLTALSGLA-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMY 305 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 305 (634)
|+.+-......+..++|++++.++... .|+..| ++.--..+...+ .++++..++..+++.. +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444556667888888888875 454443 444444455556 4777777777777655 45566666655555
Q ss_pred Hhc-C-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 306 SKC-G-SLTYSRRVFDNMSER---TVISWNAMLVGYSKHGMGR--------EVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 306 ~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
.+. + +++++.++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+. -.-|...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 555 5 666677777666643 4455655544444444444 666666666654 233445555555555
Q ss_pred hccCc-------HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH--HHHHHHhC--CCCCCHHHHHHHHHHH
Q 006705 373 SHGGM-------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE--ALEFIKNM--PFEPTAAILGSLLGAC 441 (634)
Q Consensus 373 ~~~g~-------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m--~~~p~~~~~~~ll~~~ 441 (634)
.+.+. ++++++.++.+... -+-|...|+.+-..+.+.|+... -..+.-.- .+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~----------- 277 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD----------- 277 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------------
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc-----------
Confidence 55543 45555555555432 12244445544444444443200 00000000 00000
Q ss_pred HhcCCchHHHHHHHHHhc------cCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 442 RVHYNVDIGEFVGQRLME------IEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 442 ~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
..........+.. ..+.++.+...|+++|...|+.++|.++++.+.++
T Consensus 278 -----~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 278 -----IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0011111111111 12445566778999999999999999999999643
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=3.1e-05 Score=67.45 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMS---ERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
+...+...|++++|...|++.. ..+...|..+...+...|++++|++.|++..+. .+.+...+..+..++...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcc
Confidence 3344444444444444444332 123344444444444455555555555444443 12233344444444444455
Q ss_pred HHHHHHHHHHhh
Q 006705 378 EDRGLAVFHEIV 389 (634)
Q Consensus 378 ~~~a~~~~~~~~ 389 (634)
+++|...++.+.
T Consensus 97 ~~~A~~~~~~a~ 108 (166)
T 1a17_A 97 FRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.14 E-value=5.5e-05 Score=73.33 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCC--HHHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSE-----RT----VISWNAMLVGYSKHGMGREVVELFNLMR---EENKVKPD--SVTYL 366 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~g~~pd--~~t~~ 366 (634)
+...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++.. +..+..+. ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44445566666666666655421 11 2366777777777777777777777765 22011111 14666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccC--CccC-ChHHHHHHHHHHHHcCCHHHH-HHHHHh
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEP-EIEHYGCVVDMLGRAGRVGEA-LEFIKN 424 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~ 424 (634)
.+...|...|++++|..+++...+... +... -..+|..+...|.+.|++++| ...+++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 677777777777777777777654210 1011 145666777777777777777 554544
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=9.3e-06 Score=71.06 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
+...+..+...|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...++++++++|.++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666667777777777777777665 21 235666777777777777777777777777777777777777777777
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777777553
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=1.8e-05 Score=76.22 Aligned_cols=95 Identities=11% Similarity=-0.091 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHH
Q 006705 159 EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGY 235 (634)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 235 (634)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666777777777777776653 44667777788888888888888888877654 3556777888888
Q ss_pred HhcCChHHHHHHHHHHhhc
Q 006705 236 AQLGLDEEAIELFRKLQVE 254 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~ 254 (634)
...|++++|+..|++..+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888887654
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=2.9e-05 Score=62.91 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=42.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 006705 368 VLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHY 445 (634)
Q Consensus 368 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~ 445 (634)
+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. .. +.+...|..+..++...|
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333344444444444444444331 1113334444444444444444444444433 11 123334444444444555
Q ss_pred CchHHHHHHHHHhccCCCCCchHHH
Q 006705 446 NVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 446 ~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
++++|...++++.+..|+++..+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5555555555555555554443333
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.13 E-value=1.8e-05 Score=68.10 Aligned_cols=95 Identities=6% Similarity=-0.102 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...+.+.|++++|+..|++.... -+-+...|..+..++...|++++|...|+...+.. +.++..|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHH
Confidence 345555555666666666666666666654 12234555555566666666666666666665421 2234555555
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 006705 406 VDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m 425 (634)
..+|.+.|++++|...|++.
T Consensus 111 g~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666666666665555553
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.12 E-value=1.5e-05 Score=66.46 Aligned_cols=99 Identities=7% Similarity=-0.009 Sum_probs=89.0
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSN 473 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 473 (634)
+.+...+..+...+.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778899999999999999999999986 333 467888999999999999999999999999999999999999999
Q ss_pred HHhhcCCcHHHHHHHHHHhhC
Q 006705 474 LYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998754
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=1.6e-05 Score=64.50 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-P-FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY 475 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 475 (634)
....+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567788899999999999999999986 2 2347788888999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHhhC
Q 006705 476 ASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~ 494 (634)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.11 E-value=5e-05 Score=62.74 Aligned_cols=115 Identities=12% Similarity=-0.031 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|++.|++.... .+.+...+..+...+...|++++|...++...+. .+.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 34555556666666666666666666554 2234455556666666666666666666666643 122455666666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 006705 407 DMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN 446 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~ 446 (634)
..|.+.|++++|...+++. .. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666666654 11 2244555555555555444
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=4.5e-05 Score=64.86 Aligned_cols=107 Identities=13% Similarity=-0.039 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSL 437 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l 437 (634)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|+..+++. .. +.+...|..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 333344444444444444444444442 1232 344444445555555555555555443 11 1234445555
Q ss_pred HHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHH
Q 006705 438 LGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNL 474 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 474 (634)
..++...|++++|...+++++++.|++...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5555555666666666666666666554444444433
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.09 E-value=5e-06 Score=71.47 Aligned_cols=102 Identities=7% Similarity=-0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGA 440 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 440 (634)
..+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|++.|++. .. +.+...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344455555666666666666666666431 235566666666666777777777766664 11 2344566666677
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 441 CRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 441 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
+...|++++|...+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 777777777777777777777765543
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.06 E-value=0.0019 Score=63.13 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccChhhHHHHHHHHhc
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPE---RDVVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
++.+-....+.+..++|+++++.+.. .+..+||.--..+...| .+++++.++..+.... +-+...|+.--..+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333344455566789999988754 35678888888888888 5999999999999763 2344566666666666
Q ss_pred c-c-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH--------HHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 006705 273 L-A-ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLT--------YSRRVFDNMSE---RTVISWNAMLVGYSKH 339 (634)
Q Consensus 273 ~-~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~f~~m~~---~~~~~~~~li~~~~~~ 339 (634)
. + +++++.+++..+++.. +.|...|+--.-.+.+.|..+ ++.+.++++.+ .|..+|+-....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 5 6 7889999999999775 567777776666666666655 88888887764 5778999998888888
Q ss_pred CC-------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc
Q 006705 340 GM-------GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM 377 (634)
Q Consensus 340 g~-------~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 377 (634)
++ ++++++.++++... .+-|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 76 68999999998876 34456667665555555444
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=3.1e-05 Score=65.94 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHH
Q 006705 397 PEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVIL 471 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 471 (634)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 36778889999999999999999999986 55676 67888888999999999999999999999999999999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhC
Q 006705 472 SNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 472 ~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=2.1e-05 Score=65.48 Aligned_cols=95 Identities=4% Similarity=-0.103 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-------hHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-------NYV 469 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 469 (634)
...+..|...|.+.|++++|++.|++. .. +.+...|..+..++...|++++|...+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888888888888888875 22 345677888888888999999999999998888877543 566
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 470 ILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999998765
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=4.6e-05 Score=66.56 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 006705 362 SVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLG 439 (634)
Q Consensus 362 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 439 (634)
...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|+..|++. .. +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455566666777777777777777776531 235667777777777777777777777765 22 235667778888
Q ss_pred HHHhcCCchHHHHHHHHHhccCCCCCchHHH
Q 006705 440 ACRVHYNVDIGEFVGQRLMEIEPENAGNYVI 470 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 470 (634)
++...|++++|...+++++++.|++...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8888888888888888888888887775543
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.98 E-value=2.5e-05 Score=66.40 Aligned_cols=101 Identities=9% Similarity=-0.090 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 006705 365 YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACR 442 (634)
Q Consensus 365 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 442 (634)
+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++. .. +.+...|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344445555566666666666555421 224555555666666666666666666554 11 223445555666666
Q ss_pred hcCCchHHHHHHHHHhccCCCCCchH
Q 006705 443 VHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 443 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
..|++++|...+++++++.|+++...
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 66666666666667777666655443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.7e-05 Score=63.62 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 3444445555555555555555555543 12233444444555555555555555555554321 112344444444
Q ss_pred HHHHcCCHHHHHHHHHh
Q 006705 408 MLGRAGRVGEALEFIKN 424 (634)
Q Consensus 408 ~~~~~g~~~~A~~~~~~ 424 (634)
+|...|++++|.+.|++
T Consensus 81 ~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 81 AQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 44444444444444443
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=8.8e-05 Score=77.32 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=54.9
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 304 MYSKCGSLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 304 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
.|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+. -+.+..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34555556666555554431 23455555555555555555555555555543 12233455555555555555555
Q ss_pred HHHHHHHhhhccCCccCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 006705 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDM--LGRAGRVGEALEFIK 423 (634)
Q Consensus 381 a~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 423 (634)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555421 1122233333333 445555555555554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=8.5e-05 Score=59.43 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP---TAAILGSLLG 439 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 439 (634)
.+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444445555555555555555555421 223455555566666666666666666554 1122 3556666666
Q ss_pred HHHhc-CCchHHHHHHHHHhccCCCC
Q 006705 440 ACRVH-YNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 440 ~~~~~-~~~~~a~~~~~~~~~~~p~~ 464 (634)
.+... |++++|...++++.+..|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666 67777777777776666654
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=2.9e-05 Score=66.24 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCchHHHHHHHHHhcc-------
Q 006705 402 YGCVVDMLGRAGRVGEALEFIKNM-PFEPT-------------AAILGSLLGACRVHYNVDIGEFVGQRLMEI------- 460 (634)
Q Consensus 402 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 460 (634)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334445555556666666665554 11121 237777777788888888888888777777
Q ss_pred CCCCCchH----HHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 461 EPENAGNY----VILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 461 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
+|++...| ...+.+|...|++++|.+.|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988888 99999999999999999999988653
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.91 E-value=8.3e-05 Score=73.66 Aligned_cols=126 Identities=11% Similarity=-0.044 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---------------VISWNAMLVGYSKHGMGREVVELFNLMREEN 356 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (634)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44556666667777777777777766542 2 2 467888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHH-HHHHhC
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m 425 (634)
-+.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|. .++++|
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888888888888888888888888531 335667778888888888888773 344444
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.0013 Score=63.90 Aligned_cols=164 Identities=12% Similarity=-0.014 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCccCChHH
Q 006705 325 TVISWNAMLVGYSKHGM--GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGM-EDRGLAVFHEIVDCKDGFEPEIEH 401 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~p~~~~ 401 (634)
+..+|+.-.-.+.+.|+ ++++++++.++.+. -+-|...|+.-...+...|. ++++++.++.+.+.. +-|...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHH
Confidence 33444444444444442 44555555555543 12233444433333344444 345555555554421 223444
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CCchHHHHHH
Q 006705 402 YGCVVDMLGRA--------------GRVGEALEFIKNM--PFEPTAAILGSLLGACRVH-----------YNVDIGEFVG 454 (634)
Q Consensus 402 ~~~li~~~~~~--------------g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~ 454 (634)
|+.....+.+. +.++++++.+.+. ..+-|...|+-+-..+... +.++++...+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 44444444333 3355566665554 1233555665444443333 2356677777
Q ss_pred HHHhccCCCCCchHHHHHHH---HhhcCCcHHHHHHHHHHhh
Q 006705 455 QRLMEIEPENAGNYVILSNL---YASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 455 ~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~ 493 (634)
+++++++|++.-.+..++.. ....|..+++...+.++.+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 78888888764433333222 2235666677777777754
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=7.1e-05 Score=62.17 Aligned_cols=95 Identities=5% Similarity=-0.055 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYG 403 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~ 403 (634)
+|..+...+.+.|++++|++.|++..+. -+-+...|..+..+|...|++++|+..++..++..+...++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445555666666666666666666554 12234555556666666666666666666655321000111 12444
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 006705 404 CVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...|...|++++|++.|++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 555555555666666655554
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.90 E-value=2e-05 Score=71.43 Aligned_cols=153 Identities=7% Similarity=-0.073 Sum_probs=95.7
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh----------------h
Q 006705 267 LTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE---RTV----------------I 327 (634)
Q Consensus 267 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~----------------~ 327 (634)
.......+.++.+.+.+....... ......+..+...+.+.|++++|...|++... .+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455666666666665332211 12345677788889999999999999998753 232 6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
.|..+..+|.+.|++++|+..+++..+. .+.+...+..+..++...|++++|...|+...+.. +.+...+..+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 164 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHH
Confidence 7777888888888888888888888875 34456777777788888888888888888877531 235666777777
Q ss_pred HHHHcCCHHHHH-HHHHhC
Q 006705 408 MLGRAGRVGEAL-EFIKNM 425 (634)
Q Consensus 408 ~~~~~g~~~~A~-~~~~~m 425 (634)
++.+.++.+++. ..+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777666666655 334433
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.89 E-value=0.0018 Score=63.00 Aligned_cols=190 Identities=11% Similarity=-0.009 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCG--SLTYSRRVFDNMSE---RTVISWNAMLVGYSKHGM-GREVVELF 349 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 349 (634)
++++..++..++... +.+..+|+.-.-.+.+.| .++++..+++++.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566677777777654 556777777766677777 47888888888763 577788877777777887 48899999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc---
Q 006705 350 NLMREENKVKPDSVTYLAVLSGCSHG--------------GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--- 412 (634)
Q Consensus 350 ~~m~~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 412 (634)
.++.+. -+-|...|+.....+.+. +.++++++.+...... -+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 888886 344556665554444333 4578888888888853 244677787776666665
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHhccCCCCCchHHHHH
Q 006705 413 --------GRVGEALEFIKNM-PFEPTAAILGSLLGA-----CRVHYNVDIGEFVGQRLMEIEPENAGNYVILS 472 (634)
Q Consensus 413 --------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 472 (634)
+.++++++.++++ ...||. .|..+-.+ ....+..++....+.++.+++|....-|.-|.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4578888888887 445664 45432222 12356667788899999999998655555443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=8.6e-05 Score=61.35 Aligned_cols=96 Identities=6% Similarity=0.007 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC----hHHHH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYG 403 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~ 403 (634)
.|..+...+...|++++|+..|++.... .+.+...+..+...+...|++++|...++.+.+..+...++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4555556666666666666666666654 23344555556666666666666666666665431000111 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 006705 404 CVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~m 425 (634)
.+...|.+.|++++|.+.|++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 5566666666666666666554
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.87 E-value=6.3e-05 Score=63.09 Aligned_cols=95 Identities=7% Similarity=-0.093 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|...++...+.. +.+...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHH
Confidence 3444444555555555555555555554443 12223444444444444555555555554444321 112334444
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 006705 405 VVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~ 424 (634)
+...|...|++++|...|++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444444433
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=6.7e-05 Score=77.83 Aligned_cols=143 Identities=11% Similarity=-0.022 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+... ... .-....|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~----------~-~~~~~----~~~------~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL----------S-EKESK----ASE------SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC----------C-HHHHH----HHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC----------C-hHHHH----HHH------HHHHHHHHHH
Confidence 345666666666666666666666666654 2221100 0 00000 000 0014678888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..++.+.|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998886 22 34677888899999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHh
Q 006705 484 VTR-VRELMK 492 (634)
Q Consensus 484 A~~-~~~~m~ 492 (634)
+.+ .++.|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 774 445553
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.9e-05 Score=75.87 Aligned_cols=166 Identities=9% Similarity=-0.098 Sum_probs=112.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhccC--CccC-ChH
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV----TYLAVLSGCSHGGMEDRGLAVFHEIVDCKD--GFEP-EIE 400 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~p-~~~ 400 (634)
++..+...|...|++++|.+.+.++....+..++.. +.+.+-..+...|+++++..++........ +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356677888888888888888877665311122221 222233344567888888888877654210 1122 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC---C----C
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-------PFEPT-AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE---N----A 465 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~----~ 465 (634)
++..|...|...|++++|..++.+. ..+|. ..++..++..|...|+++.|...++++....+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999988765 11222 346777788899999999999988887764322 1 2
Q ss_pred chHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 466 GNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
..+..++..+...|++++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466778888899999999888877643
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.86 E-value=3e-05 Score=80.89 Aligned_cols=114 Identities=8% Similarity=-0.009 Sum_probs=52.9
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIG 450 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a 450 (634)
...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444555555554444321 112444445555555555555555554443 11 12344455555555555555555
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH--HhhcCCcHHHHHHHH
Q 006705 451 EFVGQRLMEIEPENAGNYVILSNL--YASAGRWEDVTRVRE 489 (634)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 489 (634)
...+++++++.|++...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555555555555555444 555555555555544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.83 E-value=4.8e-05 Score=62.92 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC-------CchHH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM--PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN-------AGNYV 469 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 469 (634)
...+..+...+...|++++|...+++. ..+.+...|..+...+...|+++.|...++++.+..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777765 113356667777777777788888888887777776655 66788
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 470 ILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=5.5e-05 Score=62.71 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC---CchHHHHHHHHh
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFEPT-A---AILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN---AGNYVILSNLYA 476 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 476 (634)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++.+..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555666666666666654 11122 1 355556666667777777777777777777776 555777777777
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006705 477 SAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~ 494 (634)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777543
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=5.5e-05 Score=65.86 Aligned_cols=64 Identities=8% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 431 AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 431 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
...|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|.+.++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567778888899999999999999999999999999999999999999999999999988654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=1.5e-05 Score=65.21 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 413 GRVGEALEFIKNM-PF---EP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 413 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
|++++|+..|++. .. .| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555443 22 12 2334555555566666666666666666666666666666666666666666666666
Q ss_pred HHHHhh
Q 006705 488 RELMKE 493 (634)
Q Consensus 488 ~~~m~~ 493 (634)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=6.3e-05 Score=74.59 Aligned_cols=147 Identities=10% Similarity=-0.081 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHH
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCV 405 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 405 (634)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~---------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K---------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H---------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H---------HHHHHHH
Confidence 445667777778888888888888888765 354432 22334444333211 1 1367778
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHH-hhcCCcH
Q 006705 406 VDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLY-ASAGRWE 482 (634)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 482 (634)
..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|++...+..|..+. ...+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998888876 22 346778888888899999999999999999999998888888887774 3456677
Q ss_pred HHHHHHHHHhhC
Q 006705 483 DVTRVRELMKEK 494 (634)
Q Consensus 483 ~A~~~~~~m~~~ 494 (634)
++.+.++.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877544
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=0.0001 Score=63.51 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC------CCc
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE------NAG 466 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 466 (634)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555554443 00011 223444455555566666666555555543211 134
Q ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 467 NYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 467 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888889999999999998887654
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=0.00016 Score=72.54 Aligned_cols=137 Identities=9% Similarity=-0.068 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+.+.|++++|++.|++..+. .|+.. .... .....+. -+.+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~-------~~~~~~~---~~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAE-------DADGAKL---QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSC-------HHHHGGG---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccC-------hHHHHHH---HHHHHHHHHHHH
Confidence 45666777777888888888888777653 01100 0000 1111110 122456788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHH
Q 006705 407 DMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDV 484 (634)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 484 (634)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 3334 5778888889999999999999999999999999988888999998888887777
Q ss_pred HH
Q 006705 485 TR 486 (634)
Q Consensus 485 ~~ 486 (634)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.70 E-value=0.00016 Score=59.32 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEP-TAAILGSLLGACRVHYN 446 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 446 (634)
...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555321 224445555555555555555555555543 1112 34455555555555566
Q ss_pred chHHHHHHHHHhccCCCC
Q 006705 447 VDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 447 ~~~a~~~~~~~~~~~p~~ 464 (634)
+++|...++++++.+|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 666666666666665543
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00058 Score=70.02 Aligned_cols=121 Identities=11% Similarity=-0.100 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSE-----R----TVISWNAMLVGYSKHGMGREVVELFNLMREEN---KVKPD-SVTYLAVLSG 371 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~pd-~~t~~~ll~a 371 (634)
+...|+.+.|..++..... . -..++..+...|...|++++|..++++..... +-+|. ..++..+...
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 3344555555555544321 1 12356677778888888888888887765430 11122 2467777788
Q ss_pred HhccCcHHHHHHHHHHhhhccCCccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDGFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
|...|++++|..+++......+.+..+ ...+..+...+...|++++|...|.+.
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888999999988888776432112111 345667777778888998888777654
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.00031 Score=58.01 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHH
Q 006705 331 AMLVGYSKHGMGREVVELFNLMREENKVKPDS----VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYG 403 (634)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~ 403 (634)
.+...+.+.|++++|+..|++..+. .|+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~ 80 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHH
Confidence 3444555566666666666655553 1221 244444555555555555555555555431 111 33344
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 006705 404 CVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~ 424 (634)
.+...|.+.|++++|...|++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444445555555555544444
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.64 E-value=5.7e-05 Score=61.63 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHhhhccCC--ccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHH
Q 006705 376 GMEDRGLAVFHEIVDCKDG--FEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGE 451 (634)
Q Consensus 376 g~~~~a~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~ 451 (634)
|++++|...|+...+. + -+.+...+..+...|.+.|++++|++.|++. .. +.+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~--~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS--GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHc--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555532 1 1223445555555555566666666555554 11 223445555556666666666666
Q ss_pred HHHHHHhccCCCCCc
Q 006705 452 FVGQRLMEIEPENAG 466 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~ 466 (634)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 666666666665543
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.002 Score=68.44 Aligned_cols=168 Identities=9% Similarity=-0.058 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-
Q 006705 311 LTYSRRVFDNMSE---RTVISWNAMLVGYSKHGM----------GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGG- 376 (634)
Q Consensus 311 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g- 376 (634)
-++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+. -+-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4566777776653 355677776666666666 88999999999886 3446677887777788888
Q ss_pred -cHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--------
Q 006705 377 -MEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAG-RVGEALEFIKNM-PF-EPTAAILGSLLGACRVH-------- 444 (634)
Q Consensus 377 -~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~-------- 444 (634)
+++++.+.++.+.+.. +-+...|+.-...+.+.| .++++++.++++ .. ..|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999999752 446778888888888888 899999999887 32 34678888777766653
Q ss_pred ------CCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHH
Q 006705 445 ------YNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWED 483 (634)
Q Consensus 445 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 483 (634)
+.++++...+.+++..+|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 446788899999999999999999999999999988555
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.57 E-value=0.00015 Score=61.83 Aligned_cols=69 Identities=13% Similarity=-0.018 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHhccCCCCCch
Q 006705 401 HYGCVVDMLGRAGRVGEALEFIKNM-PF-------EPT-AAIL----GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGN 467 (634)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 467 (634)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|...+++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777788888888877777664 33 665 4578 888899999999999999999999999987654
Q ss_pred HH
Q 006705 468 YV 469 (634)
Q Consensus 468 ~~ 469 (634)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.56 E-value=0.00026 Score=60.84 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCc---cCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 006705 364 TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF---EPEIEHYGCVVDMLGRAGRVGEALEFIKNM----PFEPT----AA 432 (634)
Q Consensus 364 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~ 432 (634)
++..+...+...|++++|...++...+..+.. ......+..+...+...|++++|.+.+++. +..++ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444555555555555555544321000 001334455555555666666665555543 00111 22
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcc
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLMEI 460 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 460 (634)
.+..+...+...|++++|...++++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555666666666666666655543
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00026 Score=73.34 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=87.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCC-ccC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDG-FEP----EIEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGS 436 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ 436 (634)
+...|++++|..+++...+.... +.| ...+++.|..+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667777777777666543211 222 2456777888888888888888777664 233443 35777
Q ss_pred HHHHHHhcCCchHHHHHHHHHhc-----cCCCCCc---hHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLME-----IEPENAG---NYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
|...|...|++++|+.+++++++ ++|+.+. ....|..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887775 4566543 34578888899999999999999998754
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.55 E-value=0.00025 Score=70.27 Aligned_cols=150 Identities=9% Similarity=-0.023 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--RTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGC 372 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~ 372 (634)
...+..+...|.+.|++++|...|++... |+.. .+...|+.+++...+. ...|..+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 45577788889999999999999998653 3221 1122233333332211 12566677777
Q ss_pred hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCchH
Q 006705 373 SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA-AILGSLLGA-CRVHYNVDI 449 (634)
Q Consensus 373 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~~~~~~ 449 (634)
.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++. ...|+. ..+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888777531 335677778888888888888888888776 334433 334433333 233455666
Q ss_pred HHHHHHHHhccCCCCC
Q 006705 450 GEFVGQRLMEIEPENA 465 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~ 465 (634)
+...+.++++..|.++
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 7777888887777653
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00014 Score=58.27 Aligned_cols=92 Identities=10% Similarity=-0.092 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCC------CchHH
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPEN------AGNYV 469 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 469 (634)
+...+..+...+.+.|++++|.+.|++. .. +.+...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777777888888888888888775 22 3356777888888888888888888888888888887 55667
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 006705 470 ILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 470 ~l~~~~~~~g~~~~A~~~~~ 489 (634)
.+..++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655443
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.52 E-value=0.00022 Score=62.01 Aligned_cols=68 Identities=21% Similarity=0.113 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+...|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|+++
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3457777888888888888888888775 22 34567788888888889999999999999999988875
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.00038 Score=53.25 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHh
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYA 476 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 476 (634)
...+..+...|.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++.++.|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677777788888888888887765 11 2356677778888888888888888888888888888888888877776
Q ss_pred hcC
Q 006705 477 SAG 479 (634)
Q Consensus 477 ~~g 479 (634)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.0004 Score=54.62 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 429 PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 429 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
.+...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467788888899999999999999999999999999999999999999999999999999988653
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.43 E-value=0.0012 Score=68.28 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-T---------------VISWNAMLVGYSKHGMGREVVELFNLMREEN 356 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (634)
...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34556667777777888888777776542 2 2 467888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHH-HHHhC
Q 006705 357 KVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALE-FIKNM 425 (634)
Q Consensus 357 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m 425 (634)
-+.+...+..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|.+ ++++|
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888888888888888888888887531 2345677778888888888777663 44555
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00027 Score=56.49 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCC-------
Q 006705 326 VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE------- 398 (634)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 398 (634)
...|..+...+...|++++|++.|++..+. .+.+...+..+..++...|++++|...++...+. .|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY----TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCccHHHHH
Confidence 445666777778888888888888887765 2345567777777788888888888888887743 443
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m 425 (634)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 445556666666666666666555554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.00042 Score=56.04 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 418 ALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 418 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
|++.|++. .. +.+...|..+...+...|++++|...++++++.+|.++..|..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 22 235667777778888888888888888888888888888888899999999999999998888765
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.28 E-value=0.0012 Score=65.99 Aligned_cols=91 Identities=8% Similarity=-0.087 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC 404 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 404 (634)
+...|..+..+|.+.|++++|++.+++..+. -+.+...+..+..++...|++++|...|+...+.. +.+...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 3456666666777777777777777776654 12244566666666777777777777777766431 224555566
Q ss_pred HHHHHHHcCCHHHHHH
Q 006705 405 VVDMLGRAGRVGEALE 420 (634)
Q Consensus 405 li~~~~~~g~~~~A~~ 420 (634)
+..++.+.++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555543
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.00027 Score=60.11 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC----------chHHHHHHHHHhccCCCCCchHHHHHHHHhhc
Q 006705 411 RAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYN----------VDIGEFVGQRLMEIEPENAGNYVILSNLYASA 478 (634)
Q Consensus 411 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 478 (634)
|.+++++|.+.+++. .. +.+...|..+..++...++ +++|+..++++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555443 11 2244445444444444443 56999999999999999999999999999987
Q ss_pred C-----------CcHHHHHHHHHHhhC
Q 006705 479 G-----------RWEDVTRVRELMKEK 494 (634)
Q Consensus 479 g-----------~~~~A~~~~~~m~~~ 494 (634)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999765
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.10 E-value=0.0023 Score=66.29 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMRE-----ENKVKPDS-VTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
.+++.|...|...|++++|+.++++..+ .|.-.|+. .+...+-.++...+.+++|..++..+.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666555432 11123333 3334444556677777777777777765
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.09 E-value=0.0024 Score=49.21 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---chHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 428 EPTAAILGSLLGACRVHYN---VDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
++|...|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777777777765554 68999999999999999999999999999999999999999999987643
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.92 E-value=0.0059 Score=51.15 Aligned_cols=75 Identities=4% Similarity=-0.034 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHH----cCCH
Q 006705 340 GMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGR----AGRV 415 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~ 415 (634)
+++++|++.|++..+. | .|+.. +-..|...+.+++|.++|+...+. | +...+..|..+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCCccH
Confidence 3566777777777666 4 33333 445555666666677777766653 2 45566666666665 5566
Q ss_pred HHHHHHHHhC
Q 006705 416 GEALEFIKNM 425 (634)
Q Consensus 416 ~~A~~~~~~m 425 (634)
++|.+.|++.
T Consensus 78 ~~A~~~~~~A 87 (138)
T 1klx_A 78 RKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.90 E-value=0.011 Score=62.78 Aligned_cols=150 Identities=11% Similarity=-0.031 Sum_probs=119.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHhhhccCCccCChHHHHHHHH
Q 006705 339 HGMGREVVELFNLMREENKVKPDS-VTYLAVLSGCSHGGM----------EDRGLAVFHEIVDCKDGFEPEIEHYGCVVD 407 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 407 (634)
....++|++.++++... .|+. ..|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-.-
T Consensus 42 ~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w 115 (567)
T 1dce_A 42 GELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCW 115 (567)
T ss_dssp TCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 34457889999999986 4554 555555455555555 899999999999752 457788888888
Q ss_pred HHHHcC--CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHhccCCCCCchHHHHHHHHhhc----
Q 006705 408 MLGRAG--RVGEALEFIKNM--PFEPTAAILGSLLGACRVHY-NVDIGEFVGQRLMEIEPENAGNYVILSNLYASA---- 478 (634)
Q Consensus 408 ~~~~~g--~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 478 (634)
.+.+.| ++++++++++++ ..+.|...|+.-..+....| .++++...++++++.+|.|..+|.....++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888999 779999999998 22458889998888888888 889999999999999999999999888887764
Q ss_pred ----------CCcHHHHHHHHHHhhC
Q 006705 479 ----------GRWEDVTRVRELMKEK 494 (634)
Q Consensus 479 ----------g~~~~A~~~~~~m~~~ 494 (634)
+.++++.+.++.....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888877654
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0015 Score=66.53 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhc-----cCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeE
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLME-----IEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSW 504 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 504 (634)
+++.|..+|...|++++|+.+++++++ +.|++ ..+++.|+.+|..+|++++|..++++..+--.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-------- 402 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-------- 402 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------
Confidence 445555555556666666555555543 23333 34678899999999999999999998854211
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006705 505 IELDQILHTFHASDRSHPMREELSAKVKQLSVKFK 539 (634)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 539 (634)
..-...||...++...+.+...+|+
T Consensus 403 ----------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 403 ----------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ----------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 1123579999888777777776664
No 206
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.82 E-value=0.075 Score=42.85 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=100.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCH
Q 006705 336 YSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRV 415 (634)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 415 (634)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+-..++++.+-+-+ .+ ..||++
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Di--------------s~C~Nl 77 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DL--------------DKCQNL 77 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CG--------------GGCSCT
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhc-Cc--------------HhhhcH
Confidence 34457777777877777665 244445555544444445555566666665432 22 246777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 416 GEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 416 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
......+-.+. .+......-+......|..++-..+...++.-+|.+++...-++++|.+.|+..+|.+++++..++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 77777777764 3455566777888899999999999988766666678999999999999999999999999999999
Q ss_pred Cc
Q 006705 496 VT 497 (634)
Q Consensus 496 ~~ 497 (634)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.73 E-value=0.023 Score=47.49 Aligned_cols=112 Identities=4% Similarity=-0.092 Sum_probs=78.1
Q ss_pred CcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHH
Q 006705 376 GMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRV----HYNVDIGE 451 (634)
Q Consensus 376 g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~ 451 (634)
+++++|..+|+...+. + .|.. . |..+|...+.+++|.+.|++.-...+...+..|...|.. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~--g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL--N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT--T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC--C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777777764 4 2222 2 666777777777788887776333566677777777766 67778888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHhh----cCCcHHHHHHHHHHhhCCC
Q 006705 452 FVGQRLMEIEPENAGNYVILSNLYAS----AGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 496 (634)
..++++.+.. ++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8877777653 45677777888777 6788888888887777664
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.69 E-value=0.013 Score=44.19 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHH
Q 006705 327 ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVV 406 (634)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li 406 (634)
..|..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence 34455555555666666666666665554 12234455555555666666666666666655421 22344444444
Q ss_pred HHHH
Q 006705 407 DMLG 410 (634)
Q Consensus 407 ~~~~ 410 (634)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.68 E-value=0.0047 Score=49.65 Aligned_cols=65 Identities=6% Similarity=-0.090 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCC
Q 006705 398 EIEHYGCVVDMLGRAGRVGEALEFIKNM-PF-EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEP 462 (634)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 462 (634)
+...+..+...|.+.|++++|+..|++. .. +.+...|..+..++...|++++|...++++.++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444555555555555555555555543 11 12344555555555555555555555555555544
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.66 E-value=0.0077 Score=47.05 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+...|..+...|.+.|++++|+..|++..+. -+.+...|..+..++...|++++|...|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555666666666666666665554 122334555555556666666666666655553
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.51 E-value=0.0024 Score=54.30 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCchHHHHHHHHHhccCCCCC
Q 006705 417 EALEFIKNM-PFEP-TAAILGSLLGACRVH-----------YNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 417 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 465 (634)
+|+..|++. .+.| +...|..+..+|... |++++|...++++++++|++.
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 555555443 2222 334455555555544 589999999999999999863
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.21 Score=55.41 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=104.9
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 006705 132 SAYSQKAHSFEALN-LFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRI 210 (634)
Q Consensus 132 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (634)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33445677777766 44211 112223556666677777777765542 111 123455678999
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 006705 211 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFE 290 (634)
Q Consensus 211 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 290 (634)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987774 567899999999999999999999998864 3344444555666666555555555444
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006705 291 IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNL 351 (634)
Q Consensus 291 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 351 (634)
-++.-...|.++|++++|.+++ .+.+++++|..+-+.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 1233444566677777776664 445666666665543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.44 E-value=0.062 Score=52.46 Aligned_cols=137 Identities=10% Similarity=-0.078 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhc----cC----cHHHHHHHHHHh
Q 006705 323 ERTVISWNAMLVGYSK--HG---MGREVVELFNLMREENKVKPDS-VTYLAVLSGCSH----GG----MEDRGLAVFHEI 388 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~ 388 (634)
..+...|...+.+... .+ ...+|..+|++..+. .|+. ..+..+.-++.. .+ ........+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3467777777766432 23 347888999988875 5653 344433333320 00 001111111111
Q ss_pred hhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 389 VDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 389 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
.... ..+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.
T Consensus 268 ~a~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred Hhcc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1100 12334555555555555556666666655554 22355545544455555556666666666666666555
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.42 E-value=0.00094 Score=66.48 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 92 PVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 92 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
.+.+|+.|..++.+.+.+.+|..-|- ...|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 45677777777777777777766553 33566667788888888888888777776655543333 334467777787
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CChhh
Q 006705 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE------------------------RDVVS 227 (634)
Q Consensus 172 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 227 (634)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77766544332 134444445566777777777777777766542 36678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK 307 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 307 (634)
|-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-..+++...... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999889998888876654433333 12222 2345556777788887777777665322 3467778888888887
Q ss_pred cCCHHHHHHHHhhcCC----C-------ChhhHHHHHHHHHhcCChHHHHH
Q 006705 308 CGSLTYSRRVFDNMSE----R-------TVISWNAMLVGYSKHGMGREVVE 347 (634)
Q Consensus 308 ~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 347 (634)
- ++++-.+.++.... | ....|.-++-.|.+-..++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44454444443322 2 45678888888888888887653
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.32 E-value=0.0034 Score=63.86 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhc-----cCCCC---CchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 433 ILGSLLGACRVHYNVDIGEFVGQRLME-----IEPEN---AGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 433 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
+++.|..+|...|++++|+.+++++++ ++|+. ..+|+.|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344444444444555544444444442 23333 35678899999999999999999998754
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.17 Score=56.32 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 305 YSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLM 352 (634)
Q Consensus 305 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (634)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555666655554442 3355666666666666666666666655
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.20 E-value=0.032 Score=56.71 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=53.0
Q ss_pred HhccCcHHHHHHHHHHhhhccCC-ccC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006705 372 CSHGGMEDRGLAVFHEIVDCKDG-FEP----EIEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGS 436 (634)
Q Consensus 372 ~~~~g~~~~a~~~~~~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ 436 (634)
+...|++++|..+++...+.... +.| ...+++.|...|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666555533111 122 1345666666666666666666666554 223332 34666
Q ss_pred HHHHHHhcCCchHHHHHHHHHhc-----cCCCCCc
Q 006705 437 LLGACRVHYNVDIGEFVGQRLME-----IEPENAG 466 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~ 466 (634)
|...|...|++++|+.+++++++ ++|+.+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 66777777777777777666664 3565443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.11 E-value=0.022 Score=57.85 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=52.6
Q ss_pred cCcHHHHHHHHHHhhhccC-CccCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 006705 375 GGMEDRGLAVFHEIVDCKD-GFEPE----IEHYGCVVDMLGRAGRVGEALEFIKNM---------PFEPTA-AILGSLLG 439 (634)
Q Consensus 375 ~g~~~~a~~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~ 439 (634)
.|++++|..++++..+... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666665544210 12222 456677777777777777777776654 233443 35677777
Q ss_pred HHHhcCCchHHHHHHHHHhc
Q 006705 440 ACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 440 ~~~~~~~~~~a~~~~~~~~~ 459 (634)
.|...|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77788888888777777665
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.07 E-value=0.02 Score=44.26 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=46.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHH-HHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 405 VVDMLGRAGRVGEALEFIKNM-PFE-PTAA-ILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
....+.+.|++++|.+.+++. ... .+.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345666778888888887765 222 3455 777777788888888888888888888888876655
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.99 E-value=0.01 Score=59.24 Aligned_cols=400 Identities=11% Similarity=0.037 Sum_probs=218.5
Q ss_pred CCCChhhHHHhhhcCcHHHHHH--HHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006705 26 FPPNPQNLKTLCSNGQLTKALI--EMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFY 103 (634)
Q Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 103 (634)
...|..+|.+..+.|...++.. .|.+...+ ++..=+.|+-+|++.+++.+-.+... .|+..-...+.+-+
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 3456677777777777776643 44433322 33444667777887777654333221 34554455566666
Q ss_pred HcCCChHHHHHHHhhcCC------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 006705 104 NKCECLSDARKMFDEMRE------------------------RNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNE 159 (634)
Q Consensus 104 ~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 159 (634)
...|.++.|.-+|..++. .++.||-.+-.+|...+.+.-|--.--.+.- .||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH-
Confidence 666667666666666542 4677888888888888888776555444432 222
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHcc----CCCC-------Chhh
Q 006705 160 FTFATVLTSCAGAFGFELGKQIHSLIIKSNF-ESHIYVGSSLLDMYAKAGRIHEARGVFEC----LPER-------DVVS 227 (634)
Q Consensus 160 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~-------~~~~ 227 (634)
-...++..|-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. .++..+.++. +--| ....
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 23345566777888888777777665 32 345677888888888873 4444444332 2222 4457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHH-------
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNS------- 300 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~------- 300 (634)
|.-++-.|.+-.+++.|... |.+. +|+..--........+..+.+---+.....++. .+...+-
T Consensus 307 W~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~p 377 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 377 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCT
T ss_pred HHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccc
Confidence 88888888888888877532 2221 111111111112222233322222222222211 1111222
Q ss_pred ------HHHHHHhcCCHHHHHHHHhhcCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 006705 301 ------LIDMYSKCGSLTYSRRVFDNMSERTVISWN-AMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCS 373 (634)
Q Consensus 301 ------li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~ 373 (634)
.++++.|.|++......+......|...-| ++-..|....+++ +...-+.+|-
T Consensus 378 rlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~--------------------~LR~SId~yd 437 (624)
T 3lvg_A 378 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ--------------------ALRTSIDAYD 437 (624)
T ss_dssp TCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH--------------------HHHHTTSSCC
T ss_pred cCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH--------------------HHHHHHHHhc
Confidence 344455555555555555555555544433 3333444444443 2222233333
Q ss_pred ccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 006705 374 HGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDIGEFV 453 (634)
Q Consensus 374 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 453 (634)
+-..+..|.++ .+ .+-.+.-..-...|.+.+++++++++.++=..-.| .+...+..++.+.++.+
T Consensus 438 NFD~i~LA~rL----Ek-----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeL 502 (624)
T 3lvg_A 438 NFDNISLAQRL----EK-----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEEL 502 (624)
T ss_dssp CSCTTHHHHHH----HT-----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHH
T ss_pred cccHHHHHHHH----hh-----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHH
Confidence 33344433332 21 11233333445667889999999887765432222 33445667788888877
Q ss_pred HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHH
Q 006705 454 GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRV 487 (634)
Q Consensus 454 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 487 (634)
++-..+.+- ...|...+..|...=+.+-+.++
T Consensus 503 L~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 777666543 35677776777776677766654
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.73 E-value=0.015 Score=44.89 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCCCc-hHHHHHHHHhhcCCcHHHHHHHHHHhhC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPENAG-NYVILSNLYASAGRWEDVTRVRELMKEK 494 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 494 (634)
....+...|+++.|...++++.+..|.++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999999999999998 9999999999999999999999999765
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.38 E-value=0.28 Score=47.88 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 006705 325 TVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIV 389 (634)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 389 (634)
+...|.++...+...|++++|+..++++... + |+...|..+...+.-.|++++|.+.++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444445555555555555554 2 444444444444455555555555555554
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.03 E-value=1.3 Score=38.12 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHH
Q 006705 203 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQV 282 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 282 (634)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777776655 3566777777777777777777777766653 22333334444555444444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 283 HSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
-+.....| -+|.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44333333 1233333344456666666665544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.78 E-value=1.1 Score=38.41 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=86.6
Q ss_pred HHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCcHHHHH
Q 006705 101 VFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEFTFATVLTSCAGAFGFELGKQ 180 (634)
Q Consensus 101 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (634)
.....+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... |..++-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445789999999988876 4567899999999999999999999988743 4445555666777777666
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006705 181 IHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKL 251 (634)
Q Consensus 181 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 251 (634)
+-+.....| . +|.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++..++
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 666555554 1 23344456667889998888876654211 111112245566677776655
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.76 E-value=0.088 Score=49.28 Aligned_cols=85 Identities=7% Similarity=0.041 Sum_probs=63.2
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHhccCCC-CCchHHHHHHHHhhc-CCcHHH
Q 006705 416 GEALEFIKNM-PFEPT---AAILGSLLGACRV-----HYNVDIGEFVGQRLMEIEPE-NAGNYVILSNLYASA-GRWEDV 484 (634)
Q Consensus 416 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~A 484 (634)
.+|..++++. .+.|+ ...|..|...|.. .|+.+.|+..+++++++.|+ +..+++..++.|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 23444 4566666666666 58999999999999999997 489999999999885 999999
Q ss_pred HHHHHHHhhCCCccCC
Q 006705 485 TRVRELMKEKAVTKDP 500 (634)
Q Consensus 485 ~~~~~~m~~~~~~~~~ 500 (634)
.+.+++........+|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999876555334
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.38 E-value=0.2 Score=41.95 Aligned_cols=65 Identities=8% Similarity=-0.057 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcC---CchHHHHHHHHHhccC-C-CCCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 429 PTAAILGSLLGACRVHY---NVDIGEFVGQRLMEIE-P-ENAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 429 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
++..+.-.+..++.+.+ +.++|..+++.+.+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444454444 3345555555555555 4 2345556666666677777777777666654
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.14 E-value=0.11 Score=43.52 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 397 PEIEHYGCVVDMLGRAG---RVGEALEFIKNM-PFE-P--TAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
++..+.-.+.-++.+++ ++++++.++++. ... | +...+-.|.-+|.+.|+++.|.+.++.+++++|++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45555555555555555 444555555544 111 3 2344555666778888888888888889999998643
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.06 E-value=0.34 Score=36.86 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 397 PEIEHYGCVVDMLGRAGR---VGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 397 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
+++..+..+..++...++ .++|..++++. ... .++..+..+...+...|++++|...++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555555555543333 46666666654 222 23444555556666666666666666666666666
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.03 E-value=0.21 Score=39.05 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchH
Q 006705 399 IEHYGCVVDMLGRAGRVGEALEFIKNM-----P----FEPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNY 468 (634)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 468 (634)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344455666666666666666666553 0 113455677777888888888888888888888888875543
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.28 Score=52.94 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=50.8
Q ss_pred HHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006705 439 GACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK 492 (634)
Q Consensus 439 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 492 (634)
..|...|+++.|..+++++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 557788999999999999999999999999999999999999999999999985
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.85 E-value=5.6 Score=32.23 Aligned_cols=85 Identities=14% Similarity=0.038 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 006705 307 KCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFH 386 (634)
Q Consensus 307 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 386 (634)
+||++......+-.+.. +....+.-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 45555555444444432 3334455566777788888877777775442 56777777778888888888888888887
Q ss_pred HhhhccCCcc
Q 006705 387 EIVDCKDGFE 396 (634)
Q Consensus 387 ~~~~~~~~~~ 396 (634)
+.-+. |++
T Consensus 150 ~AC~k--G~k 157 (172)
T 1wy6_A 150 EACKK--GEK 157 (172)
T ss_dssp HHHHT--TCH
T ss_pred HHHHh--hhH
Confidence 77765 543
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.82 E-value=18 Score=38.13 Aligned_cols=252 Identities=9% Similarity=0.001 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccch
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAAL 276 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 276 (634)
-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| .........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34444555666677776666655 33344434445555666676666666666655444 22333444455555444332
Q ss_pred HH--HHHHHHHHHHcC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHHHHhc
Q 006705 277 GH--GKQVHSHVLRFE-----------IPSYV-VLQNSLIDMYSKCGSLTYSRRVFDNMSERTVIS---WNAMLVGYSKH 339 (634)
Q Consensus 277 ~~--a~~i~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~ 339 (634)
.. ..+=+..+...| ++++. .....++..+.+ ...+....... .++... ...-+.-+.+.
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~ 228 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ 228 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc
Confidence 22 111111111111 11221 122333332222 22222322222 122111 11122333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 340 GMGREVVELFNLMREENKVKPDSV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 340 g~~~~A~~~~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
+.+.|..+|....+.....+... ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 229 -d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 -DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCHHH
T ss_pred -CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc----CCChHHHHHHHHHHHHCCCHHH
Confidence 77899999988876522322222 2222333344455355666666665532 2333334444455557899999
Q ss_pred HHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCchHHHHHHHHHhc
Q 006705 418 ALEFIKNMPFEP-TAAILG-SLLGACRVHYNVDIGEFVGQRLME 459 (634)
Q Consensus 418 A~~~~~~m~~~p-~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 459 (634)
|...|+.|+..+ +..-|. =+..+....|+.++|..+++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996432 222221 123456778999999999988875
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.20 E-value=1.8 Score=40.47 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHcC-----CChHHHHHHHhhcCC--C--CcchHHHHHHHHHhC-CChh
Q 006705 75 RGGQRVHAHMIKTCYRPP---VYLRTRLIVFYNKC-----ECLSDARKMFDEMRE--R--NVVSWTAMISAYSQK-AHSF 141 (634)
Q Consensus 75 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~ 141 (634)
..|+..+++.++. .|+ -..|..|...|.+. |+.++|.+.|++..+ | +..++......+++. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666666776665 344 45677777788773 788888888877643 4 366777777777774 7777
Q ss_pred HHHHHHHHHHHCCCC--CChhhHHH
Q 006705 142 EALNLFIRMLRSDTE--PNEFTFAT 164 (634)
Q Consensus 142 ~A~~~~~~m~~~g~~--p~~~t~~~ 164 (634)
++.+.+++.+..... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 888888777776555 55443333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.20 E-value=2.2 Score=35.33 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCCH
Q 006705 323 ERTVISWNAMLVGYSKHGMG------REVVELFNLMREENKVKPDS 362 (634)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~g~~pd~ 362 (634)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccc
Confidence 45777888888888777888 7888888888775 77763
No 235
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.90 E-value=4.6 Score=30.53 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766653 33333334456678999999999999999999999988876 46788888888888888
Q ss_pred hcCCccChhhHH
Q 006705 253 VEGMISNYVTYA 264 (634)
Q Consensus 253 ~~g~~p~~~t~~ 264 (634)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 45555554
No 236
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.45 E-value=4.3 Score=30.61 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 006705 173 FGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 173 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 252 (634)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+..||.+.|-++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346677777777766553 33333334456678999999999999999999999988876 47888888888888888
Q ss_pred hcCCccChhhHH
Q 006705 253 VEGMISNYVTYA 264 (634)
Q Consensus 253 ~~g~~p~~~t~~ 264 (634)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.09 E-value=1.6 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 436 SLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 436 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
.|.-++.+.|+++.|....+.+++.+|.|..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3445666667777777777777777776643
No 238
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.60 E-value=8.2 Score=40.98 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 006705 231 IISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSK--- 307 (634)
Q Consensus 231 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--- 307 (634)
....+.-.|+++.|++++.+. ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 444556688999998877644 25566666666555433322 11111110 00 11 2224566666755
Q ss_pred cCCHHHHHHHHhhc
Q 006705 308 CGSLTYSRRVFDNM 321 (634)
Q Consensus 308 ~g~~~~A~~~f~~m 321 (634)
..++..|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 45666776665554
No 239
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.36 E-value=3.3 Score=31.85 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=25.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH
Q 006705 129 AMISAYSQKAHSFEALNLFIRMLRSD------TEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK 187 (634)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (634)
.|...+.+.|++..|...|+.....- -.+....+..+..++.+.|+++.|...++.+.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444555555555555554443310 011222333444444444444444444444443
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.08 E-value=21 Score=33.86 Aligned_cols=132 Identities=8% Similarity=0.030 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHhc
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNL----FIRMLRSDTEPNEFTFATVLTSCAG 171 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (634)
+.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455666678888999998887542 2345566776665554 4555566888888888877777665
Q ss_pred cCCcH-HHHHHHHHHHH----hC--CCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 006705 172 AFGFE-LGKQIHSLIIK----SN--FESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 238 (634)
Q Consensus 172 ~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 238 (634)
...-+ .=.++...+++ .| -.-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 43222 22344444443 22 1236788888999999999999999987532222455555555544443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.11 E-value=27 Score=35.13 Aligned_cols=311 Identities=12% Similarity=0.054 Sum_probs=147.3
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHH-hCCCCchHHHHHHHH----HHHhc
Q 006705 138 AHSFEALNLFIRMLRS-----DTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIK-SNFESHIYVGSSLLD----MYAKA 207 (634)
Q Consensus 138 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~----~y~~~ 207 (634)
|++++|++.+..+.+. ...........++..|...++++...+.+..+.+ +|..+.. ...+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666532 2334455677788888888888887776665543 2322222 222332 22222
Q ss_pred CCH--HHHHHHHccCCC---CCh-------hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc
Q 006705 208 GRI--HEARGVFECLPE---RDV-------VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA 275 (634)
Q Consensus 208 g~~--~~A~~~~~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (634)
... +.-..+.+.... .-. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------ 175 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------ 175 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence 222 222223322221 110 12234666677777777777777777543111111100
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhhHHHHHHHHHhcCChHHH
Q 006705 276 LGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSE------RT----VISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 276 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~----~~~~~~li~~~~~~g~~~~A 345 (634)
-+.++...+..|...+++..|..++.++.. ++ ..-+..++..+...+++.+|
T Consensus 176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011222333444444444444444443320 01 12344455555666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHH-----HHHH-hccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHc--CCHHH
Q 006705 346 VELFNLMREENKVKPDSVTYLAV-----LSGC-SHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRA--GRVGE 417 (634)
Q Consensus 346 ~~~~~~m~~~~g~~pd~~t~~~l-----l~a~-~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~ 417 (634)
...|.+........-|...+..+ +... +..+. .-..+....... ..-++...|..|+.+|... .+++.
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~--~~~~~l~~~~~L~k~f~~~~L~~~~~ 313 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQND--NNLKKLESQESLVKLFTTNELMRWPI 313 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHH--SSCHHHHHHHHHHHHHHHCCSSSHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhc--ccccccHHHHHHHHHHHhchHhhhHH
Confidence 66665554321111222221111 1111 11121 112222222222 2235677888999998764 46777
Q ss_pred HHHHHHhCC-CC-------CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHH
Q 006705 418 ALEFIKNMP-FE-------PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRE 489 (634)
Q Consensus 418 A~~~~~~m~-~~-------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 489 (634)
+.+.|...- .. ....-|..|......|+-.. +. .|-+.-.+..|+..+.- ..+++.+.+.
T Consensus 314 ~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~--------i~--k~Ys~I~l~~la~lL~l--~~~evE~~ls 381 (445)
T 4b4t_P 314 VQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRV--------IS--EYYSRITLLRLNELLDL--TESQTETYIS 381 (445)
T ss_dssp HHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHH--------HH--HHEEEEEHHHHHHHHTS--CHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHH--------HH--HHhceeeHHHHHHHhCc--CHHHHHHHHH
Confidence 777776541 01 11234555555444332110 00 11112233444444432 4678999999
Q ss_pred HHhhCCC
Q 006705 490 LMKEKAV 496 (634)
Q Consensus 490 ~m~~~~~ 496 (634)
.|...|.
T Consensus 382 ~mI~~g~ 388 (445)
T 4b4t_P 382 DLVNQGI 388 (445)
T ss_dssp HHHHHTS
T ss_pred HHHHCCC
Confidence 9977664
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.88 E-value=9.9 Score=31.49 Aligned_cols=38 Identities=3% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHhhcCCccCh
Q 006705 222 ERDVVSCTAIISGYAQLGLD------EEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 222 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~ 260 (634)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 35777888888877777888 7888888887764 56653
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.88 E-value=6.9 Score=31.35 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhhhccCCccC--ChHHHHHHHHHHHHcCCHH
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR---GLAVFHEIVDCKDGFEP--EIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 416 (634)
...+.+-|.+.... |. |+..+-..+..++.++..... |+.+++.+.+. + .| .....-.|.-++.|.|+++
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 44555666666555 43 666666677778888776655 89999988864 2 23 3445556777888999999
Q ss_pred HHHHHHHhC-CCCCC
Q 006705 417 EALEFIKNM-PFEPT 430 (634)
Q Consensus 417 ~A~~~~~~m-~~~p~ 430 (634)
+|.+.++.+ ..+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999886 44554
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.54 E-value=6.7 Score=33.07 Aligned_cols=112 Identities=9% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcC-----CCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHH
Q 006705 302 IDMYSKCGSLTYSRRVFDNMS-----ERTV-------ISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSV-TYLAV 368 (634)
Q Consensus 302 i~~~~~~g~~~~A~~~f~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~-t~~~l 368 (634)
+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++..+....-|... +..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 445556677777666655433 1232 1344455666677777777777766543311222111 11111
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 006705 369 LSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFE 428 (634)
Q Consensus 369 l~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 428 (634)
- ....... . . ...++.+.--.+..+|.+.|++++|+.+++.+|.+
T Consensus 107 ~----~~ss~p~---------s-~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 G----NSASTPQ---------S-Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c----ccCCCcc---------c-c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0000000 0 0 22334455556777888889999999988888643
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.29 E-value=29 Score=32.92 Aligned_cols=168 Identities=10% Similarity=0.038 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHhhcCCccChhhHHHHHHHHh
Q 006705 196 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL----FRKLQVEGMISNYVTYASVLTALS 271 (634)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 271 (634)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566667888888888887533 22234556666555443 444455677777777777776665
Q ss_pred cccchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc---CC
Q 006705 272 GLAALG-HGKQVHSHVL----RFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKH---GM 341 (634)
Q Consensus 272 ~~~~~~-~a~~i~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 341 (634)
....-+ .=..+...++ +.| ..-++.....+...|.+.|++.+|+..|-.-...|...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1223333333 333 2246778888999999999999999887633222455555555444333 33
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 342 GREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 342 ~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
..++ |...-.+++. |...|++..|..+|+...+
T Consensus 184 ~~e~---------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV---------------AEFFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH---------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred cchH---------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 3222 1111122222 3346788888888776654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.26 E-value=27 Score=35.15 Aligned_cols=32 Identities=6% Similarity=-0.009 Sum_probs=21.3
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 006705 55 EMRFEEYDTLLNACVNQRTLRGGQRVHAHMIK 86 (634)
Q Consensus 55 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 86 (634)
.........++..|...++++...+.+..+.+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33455577778888888888777666655543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.48 E-value=2 Score=42.66 Aligned_cols=66 Identities=14% Similarity=-0.009 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHh-----hCCCccCC
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMK-----EKAVTKDP 500 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 500 (634)
..++.++...|+.+++...+..+...+|-+...|..|+.+|.++|+..+|.+.|+... +.|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4456677788888888888888899999988899999999999999999999998874 34776655
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.65 E-value=15 Score=27.80 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||++.|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666555543 33333333445678899999999999999999999988765 467888888888877776
Q ss_pred cCCCCCCHHHHHH
Q 006705 355 ENKVKPDSVTYLA 367 (634)
Q Consensus 355 ~~g~~pd~~t~~~ 367 (634)
+ | .|....|..
T Consensus 98 s-g-~p~~q~Fa~ 108 (116)
T 2p58_C 98 S-Q-DPRIQTFVN 108 (116)
T ss_dssp C-C-CHHHHHHHH
T ss_pred C-C-CHHHHHHHH
Confidence 5 3 455555543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.55 E-value=5.3 Score=30.35 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+-++.+... .+.|++....+.|.||.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K---~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCchhhHHHHHHH
Confidence 555556666666 78899999999999999999999999999988864 34445677777653
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.28 E-value=6.6 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006705 44 KALIEMATLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIV 101 (634)
Q Consensus 44 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 101 (634)
+.+..+....+.|++....+.|+||.+.+++..|.++++-+...- .....+|..+++
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 345555666788888889999999998899888988888877653 233455666654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.12 E-value=14 Score=27.90 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 275 ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 275 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+++|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666665555543 33333333445678899999999999999999999988754 477888888888878877
Q ss_pred cCCCCCCHHHHHH
Q 006705 355 ENKVKPDSVTYLA 367 (634)
Q Consensus 355 ~~g~~pd~~t~~~ 367 (634)
+ | .|....|..
T Consensus 97 s-g-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 S-S-DPALADFAA 107 (115)
T ss_dssp C-S-SHHHHHHHH
T ss_pred C-C-CHHHHHHHH
Confidence 6 3 455555543
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.26 E-value=42 Score=32.06 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHhhcCCccChhhHHHHHHHHhc
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIEL----FRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34566668889999999987632 22335566776555444 3555667788888877777777665
Q ss_pred ccchH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 006705 273 LAALG-HGKQVHSHV----LRFE--IPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREV 345 (634)
Q Consensus 273 ~~~~~-~a~~i~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 345 (634)
...-+ .=..+...+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-..+.+..+..|+--+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 54321 112233333 3333 334677788889999999999999998853222223555555544433332111
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 006705 346 VELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD 390 (634)
Q Consensus 346 ~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 390 (634)
+|...-.++|. |...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22222333333 3345677777776655543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.71 E-value=50 Score=31.52 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCCCHHHHHHHHHHHhcc
Q 006705 300 SLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELF----NLMREENKVKPDSVTYLAVLSGCSHG 375 (634)
Q Consensus 300 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~g~~pd~~t~~~ll~a~~~~ 375 (634)
++..=|.+.+++++|.+++-. =...+.++|+...|-++- +...+. ++++|..+...++..+...
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC
Confidence 444557888888888877532 223355666665554443 445555 7888887777777766554
Q ss_pred CcHH-HHHHHHHHhhhc---cCC--ccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 006705 376 GMED-RGLAVFHEIVDC---KDG--FEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSLLGACRVHYNVDI 449 (634)
Q Consensus 376 g~~~-~a~~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 449 (634)
..-+ .=..+.+.+++- . | -.-++.....+...|.+.+++.+|...|- ....+....+..++..+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 4311 112222222210 1 2 22367777889999999999999998884 2323334566666654444332
Q ss_pred HHHHHHHHhccCCCCCchHH-HHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 450 GEFVGQRLMEIEPENAGNYV-ILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 450 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
|.....|. ..+--|...|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222332 234446677899999998877654
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.62 E-value=19 Score=38.90 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=44.7
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 168 SCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
.|...|+++.|..+-.+.+... +.+-.+|-.|..+|.+.|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3567789999999998888764 5567789999999999999999999998887
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.79 E-value=14 Score=36.48 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccCCccCChHH
Q 006705 330 NAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVD----CKDGFEPEIEH 401 (634)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~p~~~~ 401 (634)
..++..+...|++++|+..+..+... .+-+...+..++.++...|+..+|++.|+...+ .. |++|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL-G~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL-GIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH-SCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCCHHH
Confidence 34556667777777777777777664 345667777778888888888887777766543 23 66666554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.99 E-value=51 Score=37.87 Aligned_cols=144 Identities=12% Similarity=0.042 Sum_probs=84.2
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----C---------------
Q 006705 265 SVLTALSGLAALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSER----T--------------- 325 (634)
Q Consensus 265 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~--------------- 325 (634)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|...|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556666555544322 334444445666788888888888888776421 0
Q ss_pred -------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HH--HHHHHHHHHhccCcHHHHHHHHHHhhhccCCc
Q 006705 326 -------VISWNAMLVGYSKHGMGREVVELFNLMREENKVKPD-SV--TYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF 395 (634)
Q Consensus 326 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd-~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 395 (634)
..-|.-++..+.+.|.++.++++-+...+..+-.++ .. .|..+..++...|++++|...+-.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---- 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---- 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS----
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH----
Confidence 012455667777777777777776665554111111 11 3566777777778888777776665532
Q ss_pred cCChHHHHHHHHHHHHcCCHHH
Q 006705 396 EPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~ 417 (634)
.--......||..++..|.+++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 2234556666666666665544
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.81 E-value=1e+02 Score=34.14 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHhCCChhHHHHHHHHH
Q 006705 133 AYSQKAHSFEALNLFIRM 150 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m 150 (634)
|....|+.++++.++...
T Consensus 383 GlIh~g~~~~gl~~L~~y 400 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPY 400 (963)
T ss_dssp HHHTSSCTTTHHHHHTTT
T ss_pred hhhccCchHHHHHHHHHh
Confidence 344445555555544443
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.20 E-value=35 Score=31.24 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHh
Q 006705 274 AALGHGKQVHSHVLRFEIPSYVV--LQNSLIDMYSKCGSLTYSRRVFD 319 (634)
Q Consensus 274 ~~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~ 319 (634)
+......++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333344555555555443321 11122333445566665555555
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.14 E-value=35 Score=27.91 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCCC-CCchHHHHHHHHhhcCCcHHHHHHHHHHhh
Q 006705 449 IGEFVGQRLMEIEPE-NAGNYVILSNLYASAGRWEDVTRVRELMKE 493 (634)
Q Consensus 449 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 493 (634)
.|..+++.+.+..|. .......|+-+|.+.|++++|.+..+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445555555554553 223344555666666666666666666654
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.77 E-value=53 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=43.2
Q ss_pred HHHHHhcCCHHHHHHHHccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhh--HHHHHHHHhccc
Q 006705 201 LDMYAKAGRIHEARGVFECLP----ERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVT--YASVLTALSGLA 274 (634)
Q Consensus 201 i~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 274 (634)
+...++.|+.+-+..+++... ..|..-++.+..+ +..+......++++.+.+.|..++... -.+.+...+..|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 344556788887777776522 1233334444443 445665555667777777777665432 112333344455
Q ss_pred chHHHHHH
Q 006705 275 ALGHGKQV 282 (634)
Q Consensus 275 ~~~~a~~i 282 (634)
..+-+..+
T Consensus 231 ~~~~v~~L 238 (285)
T 1wdy_A 231 HLGLVQRL 238 (285)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 55444333
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.27 E-value=23 Score=40.76 Aligned_cols=124 Identities=4% Similarity=-0.136 Sum_probs=76.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--C-----------------
Q 006705 367 AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMP--F----------------- 427 (634)
Q Consensus 367 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~----------------- 427 (634)
.++..+...+..+.+.++..-.. .+...--.+..+|..+|++++|.+.|.+.. +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 34445555555555554433221 233333445566667777777777777651 1
Q ss_pred ------CCCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCCCCc-----hHHHHHHHHhhcCCcHHHHHHHHHHhhCCC
Q 006705 428 ------EPTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPENAG-----NYVILSNLYASAGRWEDVTRVRELMKEKAV 496 (634)
Q Consensus 428 ------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 496 (634)
..-..-|.-++..+.+++.++.+.+....+++..+++.. .|..+...+...|++++|...+-.+.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 001123555667778888888888888777765443222 466778888888999999888887766544
Q ss_pred c
Q 006705 497 T 497 (634)
Q Consensus 497 ~ 497 (634)
+
T Consensus 970 r 970 (1139)
T 4fhn_B 970 K 970 (1139)
T ss_dssp C
T ss_pred H
Confidence 3
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.15 E-value=14 Score=29.79 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHH
Q 006705 344 EVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDM 408 (634)
Q Consensus 344 ~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 408 (634)
+..+-++.+... .+.|++....+.|.||.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 71 ElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHHHH
Confidence 444555555555 78899999999999999999999999999998864 44556678877653
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.32 E-value=37 Score=31.22 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCC
Q 006705 335 GYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGR 414 (634)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 414 (634)
.+.+.|..++|++....-.+. -+-|...-..++.-+|-.|+++.|..-++...+..+...|....|..+|.+=
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 345667777777777666664 3445555556666777777777777777766643212222333444444321
Q ss_pred HHHHH-HHHHhC--C-CCCCHHHHHH-HHHHH--HhcCCchHHHHHHHHHhccCCCCC
Q 006705 415 VGEAL-EFIKNM--P-FEPTAAILGS-LLGAC--RVHYNVDIGEFVGQRLMEIEPENA 465 (634)
Q Consensus 415 ~~~A~-~~~~~m--~-~~p~~~~~~~-ll~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 465 (634)
.+. ++|..- | +.-....|.. |+.+. ...|+.+.|..+..++++.-|..+
T Consensus 79 --~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 --QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp --HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred --HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111 223221 1 0011222433 33333 345777777777777776666543
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.09 E-value=16 Score=29.44 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=26.0
Q ss_pred HcCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 006705 51 TLGLEMRFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLI 100 (634)
Q Consensus 51 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 100 (634)
...+.|++....+.|++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 34455666666666666666666666666665554432 22233444444
No 265
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.20 E-value=35 Score=31.71 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=9.2
Q ss_pred HHHHHHcCCChHHHHHHHhh
Q 006705 99 LIVFYNKCECLSDARKMFDE 118 (634)
Q Consensus 99 li~~y~~~g~~~~A~~~~~~ 118 (634)
.+...+..|+.+-+..+++.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33334444555555444443
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=67.62 E-value=32 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhccCCCC
Q 006705 437 LLGACRVHYNVDIGEFVGQRLMEIEPEN 464 (634)
Q Consensus 437 ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 464 (634)
|.-++.+.|+++.|.+..+.+++.+|+|
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3344444455555555555555555554
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.58 E-value=65 Score=27.97 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=8.1
Q ss_pred CchHHHHHHHHHHHhcCC
Q 006705 192 SHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~ 209 (634)
++..+....+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444444
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.23 E-value=1.1e+02 Score=30.08 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 006705 296 VLQNSLIDMYSKCGSLTYSRRVFDNMSE--------RTVISWNAMLVGYSK-HGMGREVVELFNLMREENKVKPDSVTYL 366 (634)
Q Consensus 296 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~g~~pd~~t~~ 366 (634)
.....|...|.+.|+.++..+++..... +....-..+|..+.. .+..+.-.++..+..+. .+-+..+|.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW--AKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_pred ------HHHHHHhccCcHHHHHHHHHHhhhccCCccCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHH
Q 006705 367 ------AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPE---IEHYGCVVDMLGRAGRVGEALEFIKNM-----PFEPTAA 432 (634)
Q Consensus 367 ------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~ 432 (634)
-+...|...|++.+|..++..+.+.-..+... .++|-.-+.+|...+++.++...+.+. .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Q ss_pred HHHHHH----HHHH-hcCCchHHHHHHHHHhc
Q 006705 433 ILGSLL----GACR-VHYNVDIGEFVGQRLME 459 (634)
Q Consensus 433 ~~~~ll----~~~~-~~~~~~~a~~~~~~~~~ 459 (634)
.-..+- -.+. ..++++.|...|-+..+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.65 E-value=20 Score=28.88 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 006705 359 KPDSVTYLAVLSGCSHGGM---EDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNM-PFEPTA 431 (634)
Q Consensus 359 ~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 431 (634)
.|+..|--....++.++.. ..+|+.+++.+.+. +-.-..+.+-.|.-++.|.|++++|.+..+.+ ...|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3455554445555555543 45677777777764 31123455556677777888888888877775 555553
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.64 E-value=54 Score=33.44 Aligned_cols=178 Identities=10% Similarity=0.035 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hhHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH--
Q 006705 295 VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTV-ISWNA-------MLVGYSKHGMGREVVELFNLMREENKVKPDSVT-- 364 (634)
Q Consensus 295 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t-- 364 (634)
..++|.++..|...+.++.|..+..+..-|.. .+.+- +...+.-.+++.+|.+.|...... .+++...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk--ap~~~~a~g 308 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK--APHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS--CSCSSSCSH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchhhhh
Confidence 56778899999999999999999998876532 22222 234566788999999999887764 2333211
Q ss_pred -------HHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006705 365 -------YLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKNMPFEPTAAILGSL 437 (634)
Q Consensus 365 -------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 437 (634)
|..++..+ .|++.+ ..+|. .+ +++.....|..|+.++ +.|++++-...+++-.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~----q~-~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~----------- 368 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH----QS-NMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK----------- 368 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT----TT-SCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH-----------
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh----ch-hHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc-----------
Confidence 11112111 233222 11111 11 2233345577777776 6688777666555431
Q ss_pred HHHHHhcCCchHHHHHHHHHh-----ccCCCCCchHHHHHHHHhhcC--CcHHHHHHHHHHhhCCCc
Q 006705 438 LGACRVHYNVDIGEFVGQRLM-----EIEPENAGNYVILSNLYASAG--RWEDVTRVRELMKEKAVT 497 (634)
Q Consensus 438 l~~~~~~~~~~~a~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~ 497 (634)
..+...|.+...+++..... ++... -.-..+.++..+.| ..++|+.+.-.|...|.-
T Consensus 369 -~~F~~Dgty~LI~rLr~~vir~~irkis~~--YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 369 -QLLLKDDTYQLCVRLRSNVIKTGIRIISLT--YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp -HHHHHTTCTHHHHHHHHHHHHHHHHHSCCC--SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSS
T ss_pred -ceeccCChhHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 22344555554443322221 22211 11123344443333 346799999999888753
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.15 E-value=56 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhccCCCCCc
Q 006705 435 GSLLGACRVHYNVDIGEFVGQRLMEIEPENAG 466 (634)
Q Consensus 435 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 466 (634)
--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34556777888888888888888888888743
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.91 E-value=80 Score=27.08 Aligned_cols=59 Identities=5% Similarity=-0.026 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006705 294 YVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMR 353 (634)
Q Consensus 294 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 353 (634)
+..+-...+.++.+.|+.+....+...+..++...-...+.++.+.|. .++...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444444444444443333333333333444444444444444443 23444444443
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.75 E-value=80 Score=27.06 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHHHhcCC
Q 006705 192 SHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 192 ~~~~~~~~li~~y~~~g~ 209 (634)
++..+-...+.+..+.|+
T Consensus 119 ~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.69 E-value=61 Score=28.67 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=20.1
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHHHHHh
Q 006705 70 NQRTLRGGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCECLSDARKMFD 117 (634)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 117 (634)
..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455555555555444444332221 11122333334455544444444
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.17 E-value=2.1e+02 Score=31.72 Aligned_cols=215 Identities=11% Similarity=0.037 Sum_probs=113.4
Q ss_pred HHhcCCHHHHHHHHccCCC----CCh--hhHHHHHHHHHhcCChHHHHHHHHHHhhcCC-------ccChhhHHHHHHHH
Q 006705 204 YAKAGRIHEARGVFECLPE----RDV--VSCTAIISGYAQLGLDEEAIELFRKLQVEGM-------ISNYVTYASVLTAL 270 (634)
Q Consensus 204 y~~~g~~~~A~~~~~~m~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~ 270 (634)
....|+.+++..+++.-.. .+. ..-..+.-|....|..++++.++.......- .+....-..+--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777788888876553 122 2233344556667777788887777654321 01111111222222
Q ss_pred hcccc-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChHH
Q 006705 271 SGLAA-LGHGKQVHSHVLRFEIPSYV--VLQNSLIDMYSKCGSLTYSRRVFDNMSE--R-TVISWNAMLVGYSKHGMGRE 344 (634)
Q Consensus 271 ~~~~~-~~~a~~i~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~ 344 (634)
+..|. -+++...+..++...- +.. ...-+|.-.|.-.|+-+....++..+.+ . ++.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 2344555555544321 111 1122334445566777777777665432 2 22223333445557889988
Q ss_pred HHHHHHHHHHcCCCCCCHHHHH---HHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHH
Q 006705 345 VVELFNLMREENKVKPDSVTYL---AVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEF 421 (634)
Q Consensus 345 A~~~~~~m~~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (634)
+..+.+.+... ..|.. -|. ++.-+|+..|+.....++++.+.+. ...++.-...+.-++.-.|+.+.+.++
T Consensus 543 ~~~li~~L~~~--~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 543 ADDLITKMLAS--DESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GHHHHHHHHHC--SCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHhC--CCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 88888888764 22322 232 3345688889988777788888763 223333333333334446776666666
Q ss_pred HHhC
Q 006705 422 IKNM 425 (634)
Q Consensus 422 ~~~m 425 (634)
+..+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 6654
No 276
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.76 E-value=78 Score=26.61 Aligned_cols=123 Identities=10% Similarity=0.025 Sum_probs=59.0
Q ss_pred hCCCCChhHHH--HHHHHHHcCCChHHHHHHHhhcCC-----CCc-------chHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006705 87 TCYRPPVYLRT--RLIVFYNKCECLSDARKMFDEMRE-----RNV-------VSWTAMISAYSQKAHSFEALNLFIRMLR 152 (634)
Q Consensus 87 ~g~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 152 (634)
.|+.|....|+ .-+..+...|.++.|+-+-+.+.. |++ .+...+.+++...|++..|...|++.+.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34445443333 335566677788887776665432 332 1445566777778888888888877543
Q ss_pred CC-CCCCh-hhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 006705 153 SD-TEPNE-FTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPE 222 (634)
Q Consensus 153 ~g-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 222 (634)
.. .-|.. .+..++-. ...... ......+..+---+..+|.+.|+.++|+.+++.++.
T Consensus 92 ~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 21 11111 11111100 000000 011223444444477778888888888888888765
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.66 E-value=87 Score=27.10 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006705 293 SYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMRE 354 (634)
Q Consensus 293 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (634)
++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444445555555544333333333334444444444555555543 344444444443
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.99 E-value=44 Score=26.80 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCccCh
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGL--DEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 260 (634)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567788888899999999988887652 2344445555555432 35567788888776654433
No 279
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.37 E-value=1.9e+02 Score=30.62 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=23.5
Q ss_pred ChHHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCCC
Q 006705 398 EIEHYGCVVDM-----LGRAGRVGEALEFIKNMPFEPT 430 (634)
Q Consensus 398 ~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 430 (634)
+..++..|.++ +...|++++|++.++++++-|.
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 34455555443 3678999999999999976664
No 280
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.06 E-value=15 Score=33.71 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHhccCCC
Q 006705 410 GRAGRVGEALEFIKNM-PFE-PTAAILGSLLGACRVHYNVDIGEFVGQRLMEIEPE 463 (634)
Q Consensus 410 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 463 (634)
.+.|.+++|++....- ... -|...-..|+..++..|+++.|..-++...+++|+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3445555555443332 112 23333334445555555555555555555555544
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.18 E-value=1.6e+02 Score=28.43 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCccC
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGL--DEEAIELFRKLQVEGMISN 259 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 259 (634)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4566777777777777777777776552 2233444444443322 2445666666666554433
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.83 E-value=1.2e+02 Score=27.74 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=48.1
Q ss_pred HHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh---hHHHHHHHHhccCCcH
Q 006705 100 IVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF---TFATVLTSCAGAFGFE 176 (634)
Q Consensus 100 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~ 176 (634)
+...++.|+.+-+..+++.-..++...-.+.+...+..|+.+- .+.+.+.|..++.. -.+. +...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHH
Confidence 3334445666555555554222221111223333445565443 33334445544322 2222 33334445554
Q ss_pred HHHHHHHHHHHhCCCCchHH---HHHHHHHHHhcCCHHHHHHHHccCC
Q 006705 177 LGKQIHSLIIKSNFESHIYV---GSSLLDMYAKAGRIHEARGVFECLP 221 (634)
Q Consensus 177 ~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~m~ 221 (634)
-+ +.+++.|..++... +.+.+...+..|+.+-+..+++.-.
T Consensus 110 ~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 110 TV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 33 33344454333211 1233444455666666666665543
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.88 E-value=83 Score=27.70 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHcc
Q 006705 205 AKAGRIHEARGVFEC 219 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~ 219 (634)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 345555555555544
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.60 E-value=41 Score=27.93 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCccCh
Q 006705 197 GSSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGL--DEEAIELFRKLQVEGMISNY 260 (634)
Q Consensus 197 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 260 (634)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567788888888999988888887652 2344445555554322 34566777777766654433
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.71 E-value=1e+02 Score=30.49 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred HHHHHHcCCChHHHHHHHhhcCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccC
Q 006705 99 LIVFYNKCECLSDARKMFDEMRERN---VVSWTAMISAYSQKAHSFEALNLFIRMLRSDTEPNEF--TFATVLTSCAGAF 173 (634)
Q Consensus 99 li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~ 173 (634)
.+..-+..|+++-+..+++.-..++ ....+. +...+..|+.+-+.- +.+.|..++.. .-.+.|...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 3444556677777777776544332 222333 333445565543333 33334333221 1112333344445
Q ss_pred CcHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCHHHHHHHHcc
Q 006705 174 GFELGKQIHSLIIKSNFESHIY--VGSSLLDMYAKAGRIHEARGVFEC 219 (634)
Q Consensus 174 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~ 219 (634)
+.+ +.+.+++.|..++.. ...+.+...++.|+.+.+..+++.
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 544 333344445433321 011123334455666666666554
No 286
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.52 E-value=1.5e+02 Score=26.90 Aligned_cols=20 Identities=5% Similarity=-0.109 Sum_probs=8.2
Q ss_pred CCCChhhHHHHHHHHHhcCC
Q 006705 221 PERDVVSCTAIISGYAQLGL 240 (634)
Q Consensus 221 ~~~~~~~~~~li~~~~~~g~ 240 (634)
..++...-...+.++...|.
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--
T ss_pred hCCCHHHHHHHHHHHHhcCC
Confidence 34444444444444444444
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.91 E-value=1.8e+02 Score=27.41 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPER 223 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~ 223 (634)
+.++.-|...|+.++|.+.++++..|
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 34555555556666666666665544
No 288
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.74 E-value=91 Score=31.06 Aligned_cols=95 Identities=6% Similarity=-0.111 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCCHHHHHHH
Q 006705 297 LQNSLIDMYSKCGSLTYSRRVFDNMSE------RTVISWNAMLVGYSKHGMGREVVELFNLMREEN--KVKPDSVTYLAV 368 (634)
Q Consensus 297 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~pd~~t~~~l 368 (634)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..+...+.+..... +-.|+...-.-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677777777777777777777653 123456667777777888888888777765421 222332211111
Q ss_pred --HHHHhccCcHHHHHHHHHHhhhc
Q 006705 369 --LSGCSHGGMEDRGLAVFHEIVDC 391 (634)
Q Consensus 369 --l~a~~~~g~~~~a~~~~~~~~~~ 391 (634)
.-.+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11244567788887777776654
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.58 E-value=83 Score=26.75 Aligned_cols=17 Identities=0% Similarity=0.118 Sum_probs=9.9
Q ss_pred HcCCChHHHHHHHhhcC
Q 006705 104 NKCECLSDARKMFDEMR 120 (634)
Q Consensus 104 ~~~g~~~~A~~~~~~~~ 120 (634)
+..|+.+....+++.-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 34566666666665443
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.44 E-value=1.1e+02 Score=30.54 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHH-
Q 006705 328 SWNAMLVGYSKHGMGREVVELFNLMREENKVKPDS--VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGC- 404 (634)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~- 404 (634)
++..+..-|.+.|++++|.+.|.++... -..+.. ..+..++..+...+++..+......+.... .-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCCCHHHHHHH
Confidence 5677888999999999999999999886 334433 567778888999999999999998876532 22233332221
Q ss_pred ---HHHHHHHcCCHHHHHHHHHhC
Q 006705 405 ---VVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 405 ---li~~~~~~g~~~~A~~~~~~m 425 (634)
-+..+...+++.+|...|-+.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 222334578999998888765
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.37 E-value=92 Score=24.86 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCC
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERN---VVSWTAMISAYSQKAH--SFEALNLFIRMLRSDTEP 157 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 157 (634)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3567788888889999999888887652 2334445555555432 345677788887766543
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.04 E-value=1.5e+02 Score=28.57 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchhHHH
Q 006705 228 CTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVLQN 299 (634)
Q Consensus 228 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~ 299 (634)
.+.++.-|...|+.++|.+.++++......+ .+....+..+.-+.+ ..+...+++..+.+.|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4667777888888888888888876322222 222333334444322 2344555666666555444433333
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.14 E-value=43 Score=30.27 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=28.9
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCChhH-------HHHHHHHHH--cCCChHHHHHHHhh
Q 006705 68 CVNQRTLRGGQRVHAHMIKTCYRPPVYL-------RTRLIVFYN--KCECLSDARKMFDE 118 (634)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~y~--~~g~~~~A~~~~~~ 118 (634)
.++.|+.+..+.+++.+.+.|...+... .+.|..+.. +.|..+-+..+++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3456778887788887777775554332 233332221 45666655555554
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.74 E-value=1.4e+02 Score=28.00 Aligned_cols=199 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhcCCCCcc--hHHHHHHHHHhCCCh--hHHHHHHHHHHHCCCCCChhh---HHHHHHH
Q 006705 96 RTRLIVFYNKCECLSDARKMFDEMRERNVV--SWTAMISAYSQKAHS--FEALNLFIRMLRSDTEPNEFT---FATVLTS 168 (634)
Q Consensus 96 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t---~~~ll~~ 168 (634)
...+|.-|...|+.++|...++++..|.-. .-..+|......++. +.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 467888898899999999999999876421 122233333333322 234456666653 33333222 3333333
Q ss_pred HhccC-CcHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHhcCC--HHHHHHHHc------cCCC----C----Ch--
Q 006705 169 CAGAF-GFELGKQIHSLII----KSNFESHIYVGSSLLDMYAKAGR--IHEARGVFE------CLPE----R----DV-- 225 (634)
Q Consensus 169 ~~~~~-~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~~~------~m~~----~----~~-- 225 (634)
+-... |...|..++..++ ..|+-|-.++....-..-...|. +..|..++. .+.. + ..
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 32221 2333444443333 23322222111100000000000 222222221 0100 0 11
Q ss_pred --hhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchh
Q 006705 226 --VSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVV 296 (634)
Q Consensus 226 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~ 296 (634)
...+.++.-|...|+.++|.+.++++......+ .+....+..+.-+.+ ..+....++..+.+.|+-+...
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 134567777888888888888888876322111 222333334443332 2344556666666555444433
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.33 E-value=1.5e+02 Score=25.74 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccc-----hHHHHHHHHHHHHcCC
Q 006705 230 AIISGYA---QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAA-----LGHGKQVHSHVLRFEI 291 (634)
Q Consensus 230 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~~~ 291 (634)
.+|+++. +..+++.|+-.+.+|.+.| .|....-..++.+.-..|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3555554 4589999999999999999 7777766667766655553 3334444444444453
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.90 E-value=59 Score=28.72 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=35.6
Q ss_pred HHHhhhcCcHHHHHHHHHHcCCCCCHhh---HHHHHHHHhccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCC
Q 006705 33 LKTLCSNGQLTKALIEMATLGLEMRFEE---YDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCE 107 (634)
Q Consensus 33 i~~~~~~~~~~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 107 (634)
+...++.|+. ++++.+.+.|..++... ++.+..+ +..|+.+ +.+.+.+.|..++.. ...+.+...+..|
T Consensus 15 L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 15 LHAAAEAGHV-DICHMLVQAGANIDTCSEDQRTPLMEA-AENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHHHHHTCH-HHHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCcH-HHHHHHHHcCCCcCccCCCCCCHHHHH-HHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 3333444443 45566666665554321 2233333 3345543 333444455433221 1122334444556
Q ss_pred ChHHHHHHHhh
Q 006705 108 CLSDARKMFDE 118 (634)
Q Consensus 108 ~~~~A~~~~~~ 118 (634)
..+-+..+++.
T Consensus 89 ~~~~~~~Ll~~ 99 (237)
T 3b7b_A 89 HYEVVQYLLSN 99 (237)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHhC
Confidence 66655555554
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.69 E-value=74 Score=27.91 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=32.8
Q ss_pred hhhcCcHHHHHHHHHHcCCCCCHhhH--HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhH---HHHHHHHHHcCCChH
Q 006705 36 LCSNGQLTKALIEMATLGLEMRFEEY--DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL---RTRLIVFYNKCECLS 110 (634)
Q Consensus 36 ~~~~~~~~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~ 110 (634)
.++.|+ .++++.+.+.|..++.... .+.+...+..|+++ +.+.+++.|..++... ..+.+...+..|..+
T Consensus 16 A~~~g~-~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGI-YERCRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHcCC-hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 334444 3445556666655433211 12333344445543 3334444443322111 122333344455555
Q ss_pred HHHHHHhh
Q 006705 111 DARKMFDE 118 (634)
Q Consensus 111 ~A~~~~~~ 118 (634)
-+..+++.
T Consensus 91 ~v~~Ll~~ 98 (240)
T 3eu9_A 91 MVVQLMKY 98 (240)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555543
No 298
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=40.80 E-value=8.6 Score=23.25 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=13.0
Q ss_pred cCCccccc-cCCccCCCCC
Q 006705 616 DKNRFHHI-VEGTCSCGDY 633 (634)
Q Consensus 616 d~~~~h~~-~~g~~sc~~~ 633 (634)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 45555555 7899999976
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.67 E-value=1.9e+02 Score=27.55 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccChhh---HHHHHHHH
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLG-LDEEAIELFRKLQVEGMISNYVT---YASVLTAL 270 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~ 270 (634)
..++.-|...|+.++|.+.++++..|. .+....+..++-+.. .-+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 457888888899999999999987663 122233333322221 12445567777776654333222 22233332
Q ss_pred hccc-chHHHHHHHHHHHH
Q 006705 271 SGLA-ALGHGKQVHSHVLR 288 (634)
Q Consensus 271 ~~~~-~~~~a~~i~~~~~~ 288 (634)
-... +...|...+..++.
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 2222 44555555555543
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.25 E-value=41 Score=30.45 Aligned_cols=53 Identities=6% Similarity=-0.103 Sum_probs=28.4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-------hHHHHHHHHh--ccCCcHHHHHHHHHH
Q 006705 133 AYSQKAHSFEALNLFIRMLRSDTEPNEF-------TFATVLTSCA--GAFGFELGKQIHSLI 185 (634)
Q Consensus 133 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~ 185 (634)
..++.|+.+....+++.+...|..++.. -.+.+..++. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455677776666666666655554422 2233333332 456666666655543
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.09 E-value=1.4e+02 Score=26.09 Aligned_cols=19 Identities=0% Similarity=-0.011 Sum_probs=8.9
Q ss_pred HHHHHcCCChHHHHHHHhh
Q 006705 100 IVFYNKCECLSDARKMFDE 118 (634)
Q Consensus 100 i~~y~~~g~~~~A~~~~~~ 118 (634)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344444555554444444
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.82 E-value=73 Score=30.57 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=38.1
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHcCCChHHHHHHHhhcCCCCc-chHHHHHHH
Q 006705 57 RFEEYDTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL--RTRLIVFYNKCECLSDARKMFDEMRERNV-VSWTAMISA 133 (634)
Q Consensus 57 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~ 133 (634)
|..-++.|..|+ ..|+++..+ .+++.|..++... ..+.+...+..|..+-+.-+++.-...+. .-++. +..
T Consensus 17 d~~g~t~L~~Aa-~~g~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~ 90 (364)
T 3ljn_A 17 DDENMEKIHVAA-RKGQTDEVR----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHL 90 (364)
T ss_dssp CHHHHHHHHHHH-HHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHH
T ss_pred CCCCCCHHHHHH-HcCCHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHH
Confidence 444444444443 345544333 3334454333221 12233444455666666666655443332 22222 333
Q ss_pred HHhCCChhHHHHHHHH
Q 006705 134 YSQKAHSFEALNLFIR 149 (634)
Q Consensus 134 ~~~~g~~~~A~~~~~~ 149 (634)
.+..|+.+-+..+++.
T Consensus 91 A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 91 AVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3455665555444444
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.95 E-value=1.3e+02 Score=25.37 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHcCCChHHHHHHHhhcC-C---CCcchHHHHHHHHH
Q 006705 62 DTLLNACVNQRTLRGGQRVHAHMIKTCYRPPVYL--RTRLIVFYNKCECLSDARKMFDEMR-E---RNVVSWTAMISAYS 135 (634)
Q Consensus 62 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~ 135 (634)
+.+..+ +..|+. ++.+.+++.|..++... ..+.+...+..|..+-+..+++.-. . +|..-++.|. ..+
T Consensus 41 t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~ 114 (201)
T 3hra_A 41 TPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-PAA 114 (201)
T ss_dssp CHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHH-HHH
T ss_pred CHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHH-HHH
Confidence 333333 344554 34445555665443321 1233444456677777777775433 1 2222233333 334
Q ss_pred hCCChhHHHHHHHHHHHCC-CC---CChhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCC
Q 006705 136 QKAHSFEALNLFIRMLRSD-TE---PNEFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIYV--GSSLLDMYAKAGR 209 (634)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~g-~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~ 209 (634)
+.|+.+-+..++ +.| .. +|..-.+.+..++........-.++.+.+++.|..++... ..+-+...++.|+
T Consensus 115 ~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 115 EKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 556654333333 333 22 2333334444444333323334566777777776554321 1123444456677
Q ss_pred HHHHHHHH
Q 006705 210 IHEARGVF 217 (634)
Q Consensus 210 ~~~A~~~~ 217 (634)
.+-+.-++
T Consensus 191 ~~~~~~Ll 198 (201)
T 3hra_A 191 TEISKILA 198 (201)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 76655544
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.85 E-value=1.1e+02 Score=29.17 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHh
Q 006705 411 RAGRVGEALEFIKN 424 (634)
Q Consensus 411 ~~g~~~~A~~~~~~ 424 (634)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555555555554
No 305
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.99 E-value=3.1e+02 Score=25.59 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=28.3
Q ss_pred HHHhhhcCcHHHHHHHHHHcCCCCCHhh----HHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 006705 33 LKTLCSNGQLTKALIEMATLGLEMRFEE----YDTLLNACVNQRTLRGGQRVHAHMIKTCYRP 91 (634)
Q Consensus 33 i~~~~~~~~~~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 91 (634)
+-.-+++|+. ++.+.+.+.|..||... ++.|..| +..|+.+ +.+.+++.|..+
T Consensus 29 L~~Av~~g~~-~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 29 LIKAVQNEDV-DLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHTTCH-HHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHcCCH-HHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCHH----HHHHHHHcCCch
Confidence 3334566664 45566677787776432 3344444 4556654 444556666443
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.72 E-value=1.9e+02 Score=25.22 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCh
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPPVY--LRTRLIVFYNKCECLSDARKMFDEMRE---RNVVSWTAMISAYSQKAHS 140 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 140 (634)
...+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.+. ..+..|+.
T Consensus 16 ~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~ 90 (237)
T 3b7b_A 16 HAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGHY 90 (237)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTCH
T ss_pred HHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCH
Confidence 3344556654 445556666544332 122345555667888777777765333 2333333333 33455554
Q ss_pred hHHHHHHHHHHHCC-CCCC---hhhHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCHHHHH
Q 006705 141 FEALNLFIRMLRSD-TEPN---EFTFATVLTSCAGAFGFELGKQIHSLIIKSNFESHIY--VGSSLLDMYAKAGRIHEAR 214 (634)
Q Consensus 141 ~~A~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 214 (634)
+ +++.+.+.| ..++ ....+. +...+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+.
T Consensus 91 ~----~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 91 E----VVQYLLSNGQMDVNCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp H----HHHHHHTTTCCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred H----HHHHHHhCCCCCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 3 344444444 2222 222222 33333445544 444455555443321 1112233344556666666
Q ss_pred HHHccC
Q 006705 215 GVFECL 220 (634)
Q Consensus 215 ~~~~~m 220 (634)
.+++.-
T Consensus 162 ~Ll~~g 167 (237)
T 3b7b_A 162 ILLAAK 167 (237)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 665543
No 307
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.62 E-value=96 Score=24.99 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=7.3
Q ss_pred HhcCCHHHHHHHHcc
Q 006705 205 AKAGRIHEARGVFEC 219 (634)
Q Consensus 205 ~~~g~~~~A~~~~~~ 219 (634)
++.|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344555555544444
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.50 E-value=2.6e+02 Score=24.30 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred chHHHHHHHHHh--ccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcch
Q 006705 447 VDIGEFVGQRLM--EIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKAVTKDPGRSWIELDQILHTFHASDRSHPMR 524 (634)
Q Consensus 447 ~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 524 (634)
......++..+. +++-.-+..|...+..+...|++.+|.++++.=.+++-.| .
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P-------------------------~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP-------------------------Y 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-------------------------H
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-------------------------H
Confidence 445566665554 3555556778899999999999999999999888776543 2
Q ss_pred HHHHHHHHHHHHHHHHcCcc
Q 006705 525 EELSAKVKQLSVKFKEAGYV 544 (634)
Q Consensus 525 ~~~~~~~~~l~~~m~~~g~~ 544 (634)
+.+.....+...+|.+.+++
T Consensus 150 ~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 150 NRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 23334455666777777763
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.41 E-value=2.4e+02 Score=25.23 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=13.2
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 006705 232 ISGYAQLGLDEEAIELFRKLQ 252 (634)
Q Consensus 232 i~~~~~~g~~~~A~~~~~~m~ 252 (634)
+..+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566667777776666554
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.86 E-value=2.2e+02 Score=24.68 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=10.8
Q ss_pred HhcCChHHHHHHHHHHhhcCC
Q 006705 236 AQLGLDEEAIELFRKLQVEGM 256 (634)
Q Consensus 236 ~~~g~~~~A~~~~~~m~~~g~ 256 (634)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 445555555555555555543
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.20 E-value=1.7e+02 Score=26.19 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=15.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 006705 130 MISAYSQKAHSFEALNLFIRMLR 152 (634)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~m~~ 152 (634)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666677777777777766543
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.06 E-value=2.8e+02 Score=24.26 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 228 CTAIISGYA---QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 228 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
.-.+|+++. +..+++.|+-.+.+|.+.|-.|....-..++.+.-..|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 334566655 45899999999999999998887777777776665544
No 313
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=30.05 E-value=17 Score=25.06 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=17.9
Q ss_pred ceeEEccCCccccccCCccCCC
Q 006705 610 RKVSLRDKNRFHHIVEGTCSCG 631 (634)
Q Consensus 610 ~~~~~~d~~~~h~~~~g~~sc~ 631 (634)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4567899999999999986543
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.56 E-value=1.5e+02 Score=30.32 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCc-cCCh--HHH-HHHHHHHHHcCCHHHHHHHHHhC
Q 006705 363 VTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGF-EPEI--EHY-GCVVDMLGRAGRVGEALEFIKNM 425 (634)
Q Consensus 363 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m 425 (634)
..++.++.-|.+.+.++.|..+..... ++.. .++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456667777777888888887777664 1111 1111 112 23455566677777877776653
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.26 E-value=2.2e+02 Score=24.63 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc
Q 006705 230 AIISGYA---QLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA 274 (634)
Q Consensus 230 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (634)
.+|+++. +..+++.|+-.+.+|.+.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 45889999999999999998887776666666655444
No 316
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=28.84 E-value=3.7e+02 Score=25.28 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=19.4
Q ss_pred HHHHCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006705 149 RMLRSDTEPNEFTFATVLTSCAGAFGFELGKQIHSLIIKSN 189 (634)
Q Consensus 149 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 189 (634)
.+.+.|+.|..+++..++..++..=.++.+.++++.+...|
T Consensus 213 hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 213 HLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 33344444444444444444444444455555555544444
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.78 E-value=1.5e+02 Score=24.47 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCchhH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLA--ALGHGKQVHSHVLRFEIPSYVVL 297 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~ 297 (634)
..+.++.-|...|+.++|...++++...... ..+....+..++-+.+ ..+....++..+.+.++-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3467888899999999999999998632111 1233334444444422 23445566666666554444333
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.44 E-value=2.5e+02 Score=23.13 Aligned_cols=111 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcc---------------------cchHHHHHHHHH
Q 006705 227 SCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGL---------------------AALGHGKQVHSH 285 (634)
Q Consensus 227 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------------------~~~~~a~~i~~~ 285 (634)
.|-.=|..| ...++-+...-|-.-.....+.+...+..++.-|.+. ...+....+|..
T Consensus 12 ~fE~~i~~y-~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~ 90 (152)
T 4a1g_A 12 MLEAHMQSY-KGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEF 90 (152)
T ss_dssp HHHHHTTSC-CSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHH
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 006705 286 VLRFEIPSY-VVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSK 338 (634)
Q Consensus 286 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 338 (634)
|...|+... ...|......+...|++.+|.++|+.-.+.+......|...|..
T Consensus 91 L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 91 LYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp HHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
No 319
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=28.36 E-value=4.9e+02 Score=26.53 Aligned_cols=68 Identities=9% Similarity=-0.084 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHH-----HHHHhccCCCCCchHHHHHHHHhhcCCcHHHHHHHHHHhhCC
Q 006705 428 EPTAAILGSLLGACRVHYNVDIGEFV-----GQRLMEIEPENAGNYVILSNLYASAGRWEDVTRVRELMKEKA 495 (634)
Q Consensus 428 ~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 495 (634)
.+|......|-.-+..+|..+.-..+ ..-+.+..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666666777777765543221 111222345566667778888999999999999999998774
No 320
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.54 E-value=3.4e+02 Score=26.45 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHcc
Q 006705 203 MYAKAGRIHEARGVFEC 219 (634)
Q Consensus 203 ~y~~~g~~~~A~~~~~~ 219 (634)
..++.|+.+-+.-+++.
T Consensus 86 ~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 86 CAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhC
Confidence 33455555555555544
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.39 E-value=97 Score=23.21 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=30.5
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHH
Q 006705 107 ECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEAL 144 (634)
Q Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (634)
...+.|+++++.++.+...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999888888999999887777765543
No 322
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.73 E-value=2.5e+02 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=10.4
Q ss_pred HHHHHcCCChHHHHHHHhh
Q 006705 100 IVFYNKCECLSDARKMFDE 118 (634)
Q Consensus 100 i~~y~~~g~~~~A~~~~~~ 118 (634)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666666554
No 323
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.65 E-value=3.8e+02 Score=24.04 Aligned_cols=81 Identities=7% Similarity=-0.030 Sum_probs=33.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006705 292 PSYVVLQNSLIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHG-MGREVVELFNLMREENKVKPDSVTYLAVLS 370 (634)
Q Consensus 292 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~ 370 (634)
.++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.| ....+...+..+.. .+|...-...+.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~ 214 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAII 214 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 3455555555555555555333333333334444444344444444433 12334444333332 234443344444
Q ss_pred HHhccC
Q 006705 371 GCSHGG 376 (634)
Q Consensus 371 a~~~~g 376 (634)
++...|
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 444444
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.53 E-value=92 Score=23.34 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=29.9
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 006705 309 GSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVV 346 (634)
Q Consensus 309 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 346 (634)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.23 E-value=1.6e+02 Score=23.83 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=16.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006705 172 AFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGR 209 (634)
Q Consensus 172 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (634)
.+..-.|.++++.+.+.+...+..|.---++.+.+.|-
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33344455555555444433333222223344444443
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.80 E-value=2e+02 Score=23.31 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=42.0
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHH
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGE 417 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 417 (634)
.+.+. |++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.+
T Consensus 12 ~l~~~-g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~--~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 12 TLKET-GVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK--FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHT-TCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG--CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHc-CCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh--CCCCChhhHHHHHHHHHHCCCEEE
Confidence 35555 777776433 3444554555666788899988875 445566676667788889998653
No 327
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.10 E-value=2.3e+02 Score=20.80 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHH
Q 006705 77 GQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDEMRERNVVSWTAMISAYSQKAHSFEA 143 (634)
Q Consensus 77 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (634)
...+++.+.+.|+-. ..-+..+- +.....+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 445677777766432 22222222 2356778888899888888888888888888887764433
No 328
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.87 E-value=2.3e+02 Score=20.78 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHH
Q 006705 179 KQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 243 (634)
Q Consensus 179 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 243 (634)
..+++.+.+.|+-.+... ..+- ......+.|.++++.++.+...++..++.++.+.+...-
T Consensus 25 ~~lld~L~~~~vlt~~~~-e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEE-EKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTSSCHHHH-HHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCCCHHHH-HHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 345666666664333222 1111 235677888999988888888888888888887775443
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.45 E-value=3.4e+02 Score=23.32 Aligned_cols=53 Identities=6% Similarity=-0.130 Sum_probs=23.4
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHhh
Q 006705 65 LNACVNQRTLRGGQRVHAHMIKTCYRPPVYLRTRLIVFYNKCECLSDARKMFDE 118 (634)
Q Consensus 65 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 118 (634)
+...+..|+++..+.++..-...--..+..-. +.+...+..|+.+-...+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHHHHHHh
Confidence 44445566766666555432111001122222 233334455666655555554
No 330
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.35 E-value=57 Score=21.92 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCH
Q 006705 339 HGMGREVVELFNLMREENKVKPDS 362 (634)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~g~~pd~ 362 (634)
.-+++.|+..|.++...+.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 347899999999998774566654
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.32 E-value=2.6e+02 Score=22.76 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHH
Q 006705 351 LMREENKVKPDSVTYLAVLSGCSHGGMEDRGLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVG 416 (634)
Q Consensus 351 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 416 (634)
.+.+. |++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 17 ~l~~~-g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~--~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKN-GLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK--DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHC-C--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH--STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHc-CCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh--CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34455 776665432 3445555555566788888888765 44456666666678888888765
No 332
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.27 E-value=3.5e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=14.2
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCC
Q 006705 166 LTSCAGAFGFELGKQIHSLIIKSNF 190 (634)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~g~ 190 (634)
+...+..|+.+.+..+.+.+++.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 4444555666666566666666554
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.18 E-value=95 Score=27.80 Aligned_cols=27 Identities=4% Similarity=-0.197 Sum_probs=17.1
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCC
Q 006705 66 NACVNQRTLRGGQRVHAHMIKTCYRPP 92 (634)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~g~~~~ 92 (634)
...+..|+.+..+.+++.+.+.|..++
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 334456777777777777777765443
No 334
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.08 E-value=20 Score=18.71 Aligned_cols=13 Identities=38% Similarity=1.260 Sum_probs=8.5
Q ss_pred cccCCcc--CCCCCC
Q 006705 622 HIVEGTC--SCGDYW 634 (634)
Q Consensus 622 ~~~~g~~--sc~~~~ 634 (634)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 466655
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.74 E-value=1.4e+02 Score=23.90 Aligned_cols=12 Identities=8% Similarity=-0.097 Sum_probs=4.9
Q ss_pred cCCHHHHHHHHh
Q 006705 308 CGSLTYSRRVFD 319 (634)
Q Consensus 308 ~g~~~~A~~~f~ 319 (634)
.|+.+-+.-+++
T Consensus 111 ~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 111 EGHTAVVSFLAA 122 (156)
T ss_dssp HTCHHHHHHHHT
T ss_pred hChHHHHHHHHh
Confidence 344444444433
No 336
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.38 E-value=3.2e+02 Score=26.29 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCccChhhHHHHHHHHhc
Q 006705 198 SSLLDMYAKAGRIHEARGVFECLPERD---VVSCTAIISGYAQLGLD--EEAIELFRKLQVEGMISNYVTYASVLTALSG 272 (634)
Q Consensus 198 ~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 272 (634)
.+++.-|...|++++|...++++..|+ ......+|......++. +.+-.++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cc----chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006705 273 LA----ALGHGKQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFDNM 321 (634)
Q Consensus 273 ~~----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 321 (634)
.. +...|..++..++..-+..+....+-+-......+...-...+|..+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.37 E-value=7.2e+02 Score=27.59 Aligned_cols=107 Identities=11% Similarity=-0.019 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCcHHH
Q 006705 301 LIDMYSKCGSLTYSRRVFDNMSERTVISWNAMLVGYSKHGMGREVVELFNLMREENKVKPDSVTYLAVLSGCSHGGMEDR 380 (634)
Q Consensus 301 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 380 (634)
++..+...|..+-|.++..-.+. +...--.+..+|...|++++|.++|++.-. |+.++...... .+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGG----------GHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccc----------hhh
Confidence 55566667777777666555554 333223455567778888888888876542 44332211000 011
Q ss_pred HHHHHHHhhhccCCccCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006705 381 GLAVFHEIVDCKDGFEPEIEHYGCVVDMLGRAGRVGEALEFIKN 424 (634)
Q Consensus 381 a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (634)
...++.... .-.....-|..++..+-+.+.++.+.++-+.
T Consensus 883 ~~~ll~~~e----~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 883 FQEIAEKYH----HQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHTT----TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccCccc----ccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111111 0011223577788888888888887776554
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.15 E-value=6.9e+02 Score=27.74 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhcCCccChhhHHHHHHHHhcccchHHH
Q 006705 200 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAIELFRKLQVEGMISNYVTYASVLTALSGLAALGHG 279 (634)
Q Consensus 200 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 279 (634)
++..+...|..+-|.++..-.+. +...--.+..+|...|++++|...|++.- .|+..+....... ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------REF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hhh
Confidence 66777788999988887776665 54443456778999999999999998764 3443222111000 000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh----hcCCCCh----hhHHHHHHHHHhcC
Q 006705 280 KQVHSHVLRFEIPSYVVLQNSLIDMYSKCGSLTYSRRVFD----NMSERTV----ISWNAMLVGYSKHG 340 (634)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~----~m~~~~~----~~~~~li~~~~~~g 340 (634)
..++... + .-.....-|..++..+-+.+.++.+.++-+ .+...|. ..|+.++.+.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111000 0 001122356677777777777776654433 3333333 35666776665443
No 339
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.10 E-value=1.9e+02 Score=26.43 Aligned_cols=216 Identities=12% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHH--------------HHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 006705 90 RPPVYLRTRLIVFYNKCECLSDARK--------------MFDEMRERNVVSWTAMISAYSQKAHSFEALNLFIRMLRSDT 155 (634)
Q Consensus 90 ~~~~~~~~~li~~y~~~g~~~~A~~--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 155 (634)
........+.+...+..|+.++..+ +-+....+|..-++.|..+..... .++++.+.+.|.
T Consensus 9 ~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~ 83 (285)
T 3d9h_A 9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-----QLSLRNLISQGW 83 (285)
T ss_dssp ---------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-----HHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-----HHHHHHHHHCCC
Q ss_pred CCChhhHH--HHHHHHhccCCcHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH-HHHH
Q 006705 156 EPNEFTFA--TVLTSCAGAFGFELGKQIHSLIIKSNFESHIYVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC-TAII 232 (634)
Q Consensus 156 ~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~-~~li 232 (634)
.++..... +.|...+..|+.+-++.+++. ...+........+-+...+..|+.+-+..+++.-...+.... .+.+
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 161 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCccChhhHH--HHHHHHhcccchHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHhcC
Q 006705 233 SGYAQLGLDEEAIELFRKLQVEGMISNYVTYA--SVLTALSGLAALGHGKQVHSHVLRFEIPSYV-VLQNSLIDMYSKCG 309 (634)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~~li~~~~~~g 309 (634)
...+..|+.+ +++.+.+.|..++..... +.+...+..|+. ++.+.+++.|..++. ....+.+...++.|
T Consensus 162 ~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 162 HEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR----ACVKKLLESGADVNQGKGQDSPLHAVVRTA 233 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTBCHHHHHHHTT
T ss_pred HHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHhh
Q 006705 310 SLTYSRRVFDN 320 (634)
Q Consensus 310 ~~~~A~~~f~~ 320 (634)
+.+-+..+++.
T Consensus 234 ~~~~v~~Ll~~ 244 (285)
T 3d9h_A 234 SEELACLLMDF 244 (285)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHC
Done!